Query 015435
Match_columns 407
No_of_seqs 142 out of 1775
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 12:34:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h51_A Aspartate aminotransfer 100.0 5.4E-60 1.8E-64 450.1 34.2 396 5-406 19-417 (420)
2 3k7y_A Aspartate aminotransfer 100.0 3.9E-59 1.3E-63 444.3 38.9 396 5-405 3-404 (405)
3 3meb_A Aspartate aminotransfer 100.0 4.1E-54 1.4E-58 417.2 40.2 404 4-407 22-445 (448)
4 4f4e_A Aromatic-amino-acid ami 100.0 1.4E-53 4.7E-58 410.6 38.5 395 4-403 22-419 (420)
5 7aat_A Aspartate aminotransfer 100.0 1.4E-52 4.9E-57 401.2 38.5 398 5-403 2-400 (401)
6 4eu1_A Mitochondrial aspartate 100.0 4.7E-52 1.6E-56 398.7 34.7 393 5-403 15-408 (409)
7 3fsl_A Aromatic-amino-acid ami 100.0 1.2E-50 4.1E-55 387.3 39.5 393 6-403 1-397 (397)
8 1ajs_A Aspartate aminotransfer 100.0 1.9E-49 6.4E-54 381.0 39.4 401 5-407 4-412 (412)
9 1yaa_A Aspartate aminotransfer 100.0 1.9E-49 6.4E-54 381.0 39.1 401 5-406 3-411 (412)
10 2q7w_A Aspartate aminotransfer 100.0 1.7E-48 5.8E-53 372.3 35.1 394 6-403 1-396 (396)
11 2ay1_A Aroat, aromatic amino a 100.0 2.1E-47 7E-52 364.6 36.5 390 6-402 1-392 (394)
12 3rq1_A Aminotransferase class 100.0 4.3E-46 1.5E-50 358.2 31.6 385 7-407 10-416 (418)
13 1b5p_A Protein (aspartate amin 100.0 7.9E-46 2.7E-50 352.5 25.0 365 6-404 4-383 (385)
14 3t18_A Aminotransferase class 100.0 2.4E-45 8.1E-50 352.5 27.7 381 6-406 8-410 (413)
15 3dyd_A Tyrosine aminotransfera 100.0 8.8E-45 3E-49 349.9 26.4 375 6-406 27-424 (427)
16 3fvs_A Kynurenine--oxoglutarat 100.0 2.2E-44 7.6E-49 346.7 22.1 377 1-406 1-422 (422)
17 3b46_A Aminotransferase BNA3; 100.0 7.9E-44 2.7E-48 345.2 24.7 342 29-401 55-442 (447)
18 3tcm_A Alanine aminotransferas 100.0 6.2E-42 2.1E-46 335.8 36.6 342 49-405 107-493 (500)
19 3aow_A Putative uncharacterize 100.0 5.6E-43 1.9E-47 338.9 28.0 366 8-405 56-444 (448)
20 3h14_A Aminotransferase, class 100.0 1.1E-42 3.9E-47 331.4 28.8 357 9-406 7-382 (391)
21 1gd9_A Aspartate aminotransfer 100.0 1.6E-42 5.4E-47 330.2 28.7 367 6-406 3-386 (389)
22 3jtx_A Aminotransferase; NP_28 100.0 1.2E-42 4E-47 331.9 26.8 358 10-403 6-395 (396)
23 2x5d_A Probable aminotransfera 100.0 4.7E-43 1.6E-47 336.4 23.9 368 6-406 10-398 (412)
24 3ihj_A Alanine aminotransferas 100.0 6.8E-42 2.3E-46 335.0 31.7 358 32-405 64-492 (498)
25 1j32_A Aspartate aminotransfer 100.0 2.5E-42 8.5E-47 328.7 27.4 368 6-406 3-387 (388)
26 3nra_A Aspartate aminotransfer 100.0 5.9E-43 2E-47 335.1 23.1 344 32-406 40-405 (407)
27 2o1b_A Aminotransferase, class 100.0 7.5E-43 2.6E-47 334.0 23.8 364 8-406 24-403 (404)
28 3e2y_A Kynurenine-oxoglutarate 100.0 5.7E-43 2E-47 335.5 21.8 363 9-401 4-408 (410)
29 1o4s_A Aspartate aminotransfer 100.0 9E-42 3.1E-46 325.0 26.5 361 7-405 15-388 (389)
30 3ele_A Amino transferase; RER0 100.0 8.9E-42 3E-46 326.0 24.9 341 30-406 34-396 (398)
31 2r2n_A Kynurenine/alpha-aminoa 100.0 6E-42 2.1E-46 329.9 23.7 371 6-406 7-424 (425)
32 3ezs_A Aminotransferase ASPB; 100.0 1.8E-41 6.2E-46 321.4 25.5 348 13-405 4-374 (376)
33 3g0t_A Putative aminotransfera 100.0 1.3E-41 4.4E-46 328.9 24.1 363 15-405 25-436 (437)
34 3qgu_A LL-diaminopimelate amin 100.0 3.1E-41 1.1E-45 327.3 26.7 344 28-405 66-439 (449)
35 3ppl_A Aspartate aminotransfer 100.0 1.5E-41 5E-46 327.5 23.5 346 30-406 32-420 (427)
36 2x5f_A Aspartate_tyrosine_phen 100.0 6E-41 2.1E-45 323.5 27.1 353 30-406 46-429 (430)
37 2zc0_A Alanine glyoxylate tran 100.0 2.7E-40 9.3E-45 316.6 31.2 373 6-406 7-404 (407)
38 1yiz_A Kynurenine aminotransfe 100.0 4.8E-41 1.6E-45 324.1 25.3 367 7-405 16-428 (429)
39 1u08_A Hypothetical aminotrans 100.0 6.3E-41 2.2E-45 318.8 25.7 357 7-401 9-385 (386)
40 1bw0_A TAT, protein (tyrosine 100.0 6E-41 2E-45 322.2 25.5 373 12-406 13-413 (416)
41 1vp4_A Aminotransferase, putat 100.0 3.1E-41 1.1E-45 325.0 23.3 371 8-406 23-418 (425)
42 2dou_A Probable N-succinyldiam 100.0 2.9E-41 9.8E-46 320.1 22.7 338 28-403 22-375 (376)
43 3fdb_A Beta C-S lyase, putativ 100.0 4.7E-41 1.6E-45 318.6 24.0 339 29-406 21-376 (377)
44 2o0r_A RV0858C (N-succinyldiam 100.0 2.5E-41 8.4E-46 324.3 22.0 363 6-405 3-395 (411)
45 1xi9_A Putative transaminase; 100.0 2.2E-40 7.5E-45 317.2 27.8 366 7-406 13-403 (406)
46 2gb3_A Aspartate aminotransfer 100.0 3.8E-40 1.3E-44 315.8 29.0 362 6-406 16-402 (409)
47 3piu_A 1-aminocyclopropane-1-c 100.0 7.1E-40 2.4E-44 316.5 30.6 348 31-406 38-432 (435)
48 2zyj_A Alpha-aminodipate amino 100.0 5.1E-40 1.8E-44 313.7 29.0 364 6-405 10-392 (397)
49 2z61_A Probable aspartate amin 100.0 1.7E-40 5.8E-45 314.1 25.2 350 8-404 4-369 (370)
50 3ei9_A LL-diaminopimelate amin 100.0 1.3E-40 4.3E-45 321.5 24.6 341 29-403 54-425 (432)
51 3ez1_A Aminotransferase MOCR f 100.0 4.1E-40 1.4E-44 317.0 26.3 348 31-406 25-415 (423)
52 1iay_A ACC synthase 2, 1-amino 100.0 2E-39 6.9E-44 312.7 30.8 348 31-406 36-427 (428)
53 1v2d_A Glutamine aminotransfer 100.0 3.9E-40 1.3E-44 312.8 24.4 355 6-405 3-370 (381)
54 3dzz_A Putative pyridoxal 5'-p 100.0 7.3E-40 2.5E-44 311.8 26.1 346 29-406 25-389 (391)
55 3d6k_A Putative aminotransfera 100.0 5.6E-40 1.9E-44 315.9 25.0 356 18-406 21-418 (422)
56 3kax_A Aminotransferase, class 100.0 4E-40 1.4E-44 312.8 23.5 341 29-403 22-382 (383)
57 3ly1_A Putative histidinol-pho 100.0 3.3E-39 1.1E-43 303.3 28.4 330 26-405 11-351 (354)
58 3f6t_A Aspartate aminotransfer 100.0 4.1E-40 1.4E-44 324.8 19.4 346 32-406 104-525 (533)
59 4dq6_A Putative pyridoxal phos 100.0 2.6E-39 8.9E-44 308.0 23.6 339 30-403 31-390 (391)
60 3l8a_A METC, putative aminotra 100.0 1.5E-39 5.3E-44 312.8 21.3 343 30-404 60-420 (421)
61 3get_A Histidinol-phosphate am 100.0 2E-38 6.8E-43 299.3 28.3 324 30-403 29-364 (365)
62 3op7_A Aminotransferase class 100.0 1.3E-38 4.5E-43 301.6 25.2 313 55-406 46-371 (375)
63 3euc_A Histidinol-phosphate am 100.0 5.6E-38 1.9E-42 296.4 29.0 330 25-404 24-366 (367)
64 3g7q_A Valine-pyruvate aminotr 100.0 4.6E-39 1.6E-43 309.1 21.9 367 6-406 7-413 (417)
65 1c7n_A Cystalysin; transferase 100.0 1E-38 3.5E-43 304.9 24.2 343 31-406 31-393 (399)
66 2zy4_A L-aspartate beta-decarb 100.0 3.1E-39 1.1E-43 318.6 18.6 338 33-405 106-521 (546)
67 3ffh_A Histidinol-phosphate am 100.0 3.9E-38 1.3E-42 297.0 24.7 323 29-403 30-363 (363)
68 3asa_A LL-diaminopimelate amin 100.0 1.1E-38 3.7E-43 304.9 20.6 359 6-405 3-392 (400)
69 1d2f_A MALY protein; aminotran 100.0 3.7E-38 1.3E-42 300.1 23.2 341 31-406 28-389 (390)
70 3if2_A Aminotransferase; YP_26 100.0 4.4E-38 1.5E-42 304.8 22.3 365 15-406 14-440 (444)
71 3ftb_A Histidinol-phosphate am 100.0 9.7E-37 3.3E-41 287.2 28.5 323 29-405 24-360 (361)
72 1fg7_A Histidinol phosphate am 100.0 1.9E-37 6.4E-42 291.6 23.3 315 31-402 29-354 (356)
73 3p1t_A Putative histidinol-pho 100.0 2.4E-36 8.3E-41 281.8 28.2 314 29-404 14-335 (337)
74 3hdo_A Histidinol-phosphate am 100.0 9.2E-36 3.2E-40 280.5 30.9 319 29-404 24-353 (360)
75 1lc5_A COBD, L-threonine-O-3-p 100.0 3.7E-36 1.3E-40 283.7 27.5 339 16-406 10-360 (364)
76 3cq5_A Histidinol-phosphate am 100.0 4.1E-36 1.4E-40 283.9 26.6 328 32-404 31-366 (369)
77 3b1d_A Betac-S lyase; HET: PLP 100.0 1.1E-39 3.6E-44 311.0 0.0 341 31-404 31-391 (392)
78 3bwn_A AT1G70560, L-tryptophan 100.0 8E-37 2.7E-41 290.7 11.6 329 28-405 19-386 (391)
79 1uu1_A Histidinol-phosphate am 100.0 2E-35 6.7E-40 275.5 20.5 310 31-402 19-334 (335)
80 3fkd_A L-threonine-O-3-phospha 100.0 2.8E-34 9.5E-39 269.3 21.7 314 30-405 14-341 (350)
81 3a2b_A Serine palmitoyltransfe 100.0 3.4E-33 1.2E-37 266.5 25.0 332 29-407 41-393 (398)
82 2hox_A ALLIIN lyase 1; cystein 100.0 9.6E-35 3.3E-39 279.2 8.7 330 30-405 55-424 (427)
83 3tqx_A 2-amino-3-ketobutyrate 100.0 4.4E-31 1.5E-35 251.9 24.5 333 29-407 41-397 (399)
84 1t3i_A Probable cysteine desul 100.0 1.2E-30 4E-35 250.5 23.9 329 31-406 27-413 (420)
85 1kmj_A Selenocysteine lyase; p 100.0 2.8E-30 9.4E-35 246.8 25.3 331 30-407 21-406 (406)
86 1sff_A 4-aminobutyrate aminotr 100.0 4.2E-31 1.4E-35 254.3 19.0 342 29-406 39-424 (426)
87 4adb_A Succinylornithine trans 100.0 4.7E-31 1.6E-35 252.4 18.9 332 28-406 36-400 (406)
88 1bs0_A Protein (8-amino-7-oxon 100.0 4.5E-30 1.5E-34 243.7 24.7 325 29-402 37-383 (384)
89 3ruy_A Ornithine aminotransfer 100.0 7.3E-30 2.5E-34 243.0 23.8 330 28-403 33-391 (392)
90 2ord_A Acoat, acetylornithine 100.0 8.5E-31 2.9E-35 249.9 17.2 329 28-405 37-396 (397)
91 2dr1_A PH1308 protein, 386AA l 100.0 1.1E-29 3.6E-34 241.1 24.6 294 78-406 52-379 (386)
92 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 7.3E-31 2.5E-35 247.9 16.5 324 30-407 6-371 (371)
93 1e5e_A MGL, methionine gamma-l 100.0 3.3E-29 1.1E-33 239.1 28.0 311 32-405 19-394 (404)
94 2w8t_A SPT, serine palmitoyltr 100.0 8.5E-30 2.9E-34 245.2 23.2 328 29-406 62-415 (427)
95 1fc4_A 2-amino-3-ketobutyrate 100.0 1E-29 3.4E-34 242.7 22.8 328 29-407 43-398 (401)
96 2eh6_A Acoat, acetylornithine 100.0 1.4E-30 4.9E-35 246.3 16.5 331 28-403 25-375 (375)
97 1eg5_A Aminotransferase; PLP-d 100.0 6.9E-30 2.4E-34 242.2 21.2 316 48-406 12-376 (384)
98 3kki_A CAI-1 autoinducer synth 100.0 2E-29 6.9E-34 241.3 23.7 328 29-406 57-404 (409)
99 2bwn_A 5-aminolevulinate synth 100.0 5.4E-29 1.8E-33 237.7 23.9 334 30-407 45-401 (401)
100 3l44_A Glutamate-1-semialdehyd 100.0 3.6E-29 1.2E-33 241.4 21.9 336 28-406 52-430 (434)
101 3i4j_A Aminotransferase, class 100.0 2.1E-29 7.2E-34 242.8 20.2 347 28-406 26-428 (430)
102 2pb2_A Acetylornithine/succiny 100.0 5.6E-29 1.9E-33 238.9 23.0 331 28-406 54-418 (420)
103 3k28_A Glutamate-1-semialdehyd 100.0 7E-29 2.4E-33 239.0 22.8 337 28-406 50-427 (429)
104 1jg8_A L-ALLO-threonine aldola 100.0 2.5E-29 8.4E-34 235.3 17.7 319 32-406 4-346 (347)
105 1vef_A Acetylornithine/acetyl- 100.0 2.4E-29 8.3E-34 239.6 17.9 337 29-403 43-394 (395)
106 1vjo_A Alanine--glyoxylate ami 100.0 5.1E-29 1.7E-33 237.2 19.9 296 70-403 60-392 (393)
107 3nx3_A Acoat, acetylornithine 100.0 1.6E-28 5.4E-33 234.0 23.1 331 28-405 33-394 (395)
108 3fq8_A Glutamate-1-semialdehyd 100.0 1.9E-28 6.5E-33 235.9 22.4 331 28-406 49-427 (427)
109 1m32_A 2-aminoethylphosphonate 100.0 1.3E-28 4.6E-33 231.7 20.7 291 75-407 37-366 (366)
110 3f9t_A TDC, L-tyrosine decarbo 100.0 1.3E-28 4.4E-33 234.3 20.7 318 48-404 41-396 (397)
111 4a6r_A Omega transaminase; tra 100.0 3.5E-28 1.2E-32 236.0 24.0 352 28-406 47-449 (459)
112 4ffc_A 4-aminobutyrate aminotr 100.0 1.3E-28 4.4E-33 238.5 20.8 337 28-406 61-449 (453)
113 1elu_A L-cysteine/L-cystine C- 100.0 3E-29 1E-33 238.4 16.0 328 31-401 15-387 (390)
114 2eo5_A 419AA long hypothetical 100.0 9.7E-29 3.3E-33 237.3 19.3 332 29-406 40-418 (419)
115 2z9v_A Aspartate aminotransfer 100.0 3.2E-28 1.1E-32 231.5 22.4 292 75-407 42-372 (392)
116 3gju_A Putative aminotransfera 100.0 6.1E-28 2.1E-32 234.4 24.7 353 28-406 48-456 (460)
117 1svv_A Threonine aldolase; str 100.0 2.3E-28 7.8E-33 229.5 20.9 332 30-406 12-358 (359)
118 2ez2_A Beta-tyrosinase, tyrosi 100.0 1.1E-27 3.6E-32 232.6 26.2 336 29-405 31-430 (456)
119 3zrp_A Serine-pyruvate aminotr 100.0 1.9E-28 6.4E-33 232.3 20.3 293 75-406 35-363 (384)
120 3dxv_A Alpha-amino-epsilon-cap 100.0 3.8E-29 1.3E-33 241.6 15.8 340 28-406 40-425 (439)
121 3tfu_A Adenosylmethionine-8-am 100.0 1.3E-28 4.3E-33 238.5 19.3 344 29-407 71-454 (457)
122 1s0a_A Adenosylmethionine-8-am 100.0 3.3E-28 1.1E-32 234.4 20.8 341 29-405 41-423 (429)
123 2ch1_A 3-hydroxykynurenine tra 100.0 4.4E-28 1.5E-32 230.9 20.9 291 76-406 52-383 (396)
124 2huf_A Alanine glyoxylate amin 100.0 4.1E-28 1.4E-32 230.8 20.6 292 74-406 51-383 (393)
125 2oat_A Ornithine aminotransfer 100.0 2.1E-27 7.1E-32 229.1 25.2 332 28-406 73-439 (439)
126 1z7d_A Ornithine aminotransfer 100.0 3.3E-28 1.1E-32 234.3 19.2 331 29-406 63-429 (433)
127 3i5t_A Aminotransferase; pyrid 100.0 1.8E-27 6E-32 231.7 24.5 347 27-405 50-453 (476)
128 1zod_A DGD, 2,2-dialkylglycine 100.0 3.5E-28 1.2E-32 234.5 19.2 342 29-406 41-432 (433)
129 1iug_A Putative aspartate amin 100.0 6.1E-28 2.1E-32 226.1 19.9 286 75-406 34-348 (352)
130 4e77_A Glutamate-1-semialdehyd 100.0 1.3E-27 4.3E-32 230.3 22.3 329 28-405 50-428 (429)
131 3kgw_A Alanine-glyoxylate amin 100.0 1.4E-27 4.8E-32 227.0 22.4 288 76-406 57-388 (393)
132 3lvm_A Cysteine desulfurase; s 100.0 4.2E-28 1.4E-32 233.1 18.7 285 76-406 69-399 (423)
133 3nnk_A Ureidoglycine-glyoxylat 100.0 1.5E-27 5.1E-32 228.3 22.4 291 77-407 48-391 (411)
134 3isl_A Purine catabolism prote 100.0 2.5E-27 8.5E-32 227.1 23.3 317 48-407 17-391 (416)
135 4eb5_A Probable cysteine desul 100.0 1.2E-27 4.2E-32 226.5 20.5 316 48-406 11-373 (382)
136 3cai_A Possible aminotransfera 100.0 5.7E-27 2E-31 223.9 25.0 327 32-401 26-404 (406)
137 3n5m_A Adenosylmethionine-8-am 100.0 1.4E-27 4.9E-32 231.4 21.0 342 28-405 46-451 (452)
138 2epj_A Glutamate-1-semialdehyd 100.0 1.7E-27 5.7E-32 229.8 21.3 331 28-406 53-431 (434)
139 3oks_A 4-aminobutyrate transam 100.0 6.5E-28 2.2E-32 233.5 18.1 342 28-405 58-450 (451)
140 4hvk_A Probable cysteine desul 100.0 2.7E-27 9.2E-32 224.0 21.8 314 48-406 11-373 (382)
141 3hmu_A Aminotransferase, class 100.0 1E-27 3.5E-32 233.0 19.3 344 28-405 52-451 (472)
142 3dod_A Adenosylmethionine-8-am 100.0 1.1E-27 3.8E-32 231.8 18.9 343 28-406 41-443 (448)
143 2oga_A Transaminase; PLP-depen 100.0 4.5E-27 1.5E-31 224.2 21.2 317 31-406 30-396 (399)
144 1v72_A Aldolase; PLP-dependent 100.0 1.4E-27 4.9E-32 223.9 17.2 326 30-405 6-352 (356)
145 2po3_A 4-dehydrase; external a 100.0 7.4E-27 2.5E-31 224.5 22.5 317 35-405 20-385 (424)
146 1ax4_A Tryptophanase; tryptoph 100.0 8.1E-27 2.8E-31 227.1 22.8 339 30-405 33-440 (467)
147 2bkw_A Alanine-glyoxylate amin 100.0 8.3E-27 2.8E-31 221.1 22.1 296 76-407 39-385 (385)
148 3a8u_X Omega-amino acid--pyruv 100.0 6.2E-27 2.1E-31 226.8 21.5 341 29-406 48-447 (449)
149 2cy8_A D-phgat, D-phenylglycin 100.0 4.5E-27 1.5E-31 228.0 20.4 328 29-406 55-435 (453)
150 2rfv_A Methionine gamma-lyase; 99.9 7E-26 2.4E-30 215.9 28.1 250 34-339 23-282 (398)
151 2yrr_A Aminotransferase, class 99.9 7.1E-27 2.4E-31 218.7 20.7 285 75-405 33-352 (353)
152 2e7u_A Glutamate-1-semialdehyd 99.9 6.2E-27 2.1E-31 225.1 20.7 327 28-403 49-424 (424)
153 3f0h_A Aminotransferase; RER07 99.9 8.1E-27 2.8E-31 220.5 20.8 289 77-405 54-373 (376)
154 2aeu_A Hypothetical protein MJ 99.9 2.9E-26 1E-30 216.5 23.8 322 29-406 25-371 (374)
155 1b9h_A AHBA synthase, protein 99.9 4.5E-26 1.5E-30 216.5 24.6 305 51-405 17-387 (388)
156 2cjg_A L-lysine-epsilon aminot 99.9 8.7E-27 3E-31 225.5 18.9 343 28-406 51-448 (449)
157 2dkj_A Serine hydroxymethyltra 99.9 5.6E-26 1.9E-30 217.1 24.0 324 31-405 23-387 (407)
158 3vax_A Putative uncharacterize 99.9 1.1E-27 3.7E-32 228.5 11.6 314 48-405 31-399 (400)
159 3mc6_A Sphingosine-1-phosphate 99.9 5.7E-26 1.9E-30 222.8 20.9 308 68-406 96-437 (497)
160 3mad_A Sphingosine-1-phosphate 99.9 5.4E-25 1.8E-29 216.7 25.8 307 69-406 129-469 (514)
161 1mdo_A ARNB aminotransferase; 99.9 2.2E-25 7.5E-30 212.0 22.2 312 32-405 9-385 (393)
162 3uwc_A Nucleotide-sugar aminot 99.9 1E-25 3.6E-30 212.8 19.5 317 31-406 6-371 (374)
163 1ibj_A CBL, cystathionine beta 99.9 5.3E-26 1.8E-30 219.8 17.3 234 31-308 89-328 (464)
164 3dr4_A Putative perosamine syn 99.9 1.1E-25 3.7E-30 214.1 18.8 315 30-403 21-390 (391)
165 3ffr_A Phosphoserine aminotran 99.9 1.5E-25 5.3E-30 210.5 18.9 310 48-403 14-361 (362)
166 3lws_A Aromatic amino acid bet 99.9 6.4E-26 2.2E-30 212.9 15.8 287 68-403 40-356 (357)
167 2c81_A Glutamine-2-deoxy-scyll 99.9 1.2E-24 4E-29 208.8 24.8 310 48-406 13-414 (418)
168 1qz9_A Kynureninase; kynurenin 99.9 6.8E-25 2.3E-29 210.2 21.8 325 31-406 27-402 (416)
169 3acz_A Methionine gamma-lyase; 99.9 2.2E-24 7.4E-29 204.8 24.8 276 74-405 58-388 (389)
170 1wyu_B Glycine dehydrogenase s 99.9 6.2E-25 2.1E-29 213.9 21.3 325 32-404 67-439 (474)
171 2oqx_A Tryptophanase; lyase, p 99.9 9.3E-25 3.2E-29 212.6 22.4 337 30-405 31-441 (467)
172 3nyt_A Aminotransferase WBPE; 99.9 2.9E-25 9.8E-30 209.4 18.0 284 70-402 30-360 (367)
173 3a9z_A Selenocysteine lyase; P 99.9 1.5E-24 5E-29 209.0 23.3 323 31-406 17-428 (432)
174 3pj0_A LMO0305 protein; struct 99.9 2.8E-25 9.7E-30 208.6 17.1 289 68-402 41-358 (359)
175 1cs1_A CGS, protein (cystathio 99.9 1.9E-23 6.4E-28 198.2 29.6 279 73-406 50-383 (386)
176 1gc0_A Methionine gamma-lyase; 99.9 5.4E-24 1.8E-28 202.8 25.7 277 73-405 63-396 (398)
177 3ndn_A O-succinylhomoserine su 99.9 6.2E-24 2.1E-28 202.7 25.8 237 51-340 56-299 (414)
178 1pff_A Methionine gamma-lyase; 99.9 6.1E-25 2.1E-29 204.1 18.1 246 79-376 2-269 (331)
179 3qhx_A Cystathionine gamma-syn 99.9 1.3E-23 4.3E-28 199.6 26.7 215 74-340 65-284 (392)
180 2fnu_A Aminotransferase; prote 99.9 3.5E-24 1.2E-28 202.3 22.4 305 48-407 10-373 (375)
181 3cog_A Cystathionine gamma-lya 99.9 4E-24 1.4E-28 203.7 22.4 277 73-405 65-397 (403)
182 1qgn_A Protein (cystathionine 99.9 1.6E-22 5.5E-27 193.9 32.8 272 75-405 114-444 (445)
183 3frk_A QDTB; aminotransferase, 99.9 1.1E-24 3.6E-29 205.9 17.4 303 50-405 16-367 (373)
184 2cb1_A O-acetyl homoserine sul 99.9 6.2E-23 2.1E-27 196.3 29.5 257 68-376 47-352 (412)
185 1w23_A Phosphoserine aminotran 99.9 2E-25 6.7E-30 209.8 9.7 278 77-405 50-359 (360)
186 2c0r_A PSAT, phosphoserine ami 99.9 7.2E-25 2.5E-29 206.2 12.7 310 48-406 14-361 (362)
187 3n0l_A Serine hydroxymethyltra 99.9 2.8E-23 9.5E-28 199.0 23.1 321 32-405 26-388 (417)
188 2yky_A Beta-transaminase; tran 99.9 1.4E-26 4.7E-31 222.7 0.0 336 28-406 97-460 (465)
189 1rv3_A Serine hydroxymethyltra 99.9 3.5E-24 1.2E-28 208.8 16.9 334 31-405 44-430 (483)
190 1o69_A Aminotransferase; struc 99.9 3E-23 1E-27 197.4 22.1 301 50-404 11-385 (394)
191 3e9k_A Kynureninase; kynurenin 99.9 8.4E-24 2.9E-28 205.6 18.3 295 77-405 113-460 (465)
192 1n8p_A Cystathionine gamma-lya 99.9 7.8E-23 2.7E-27 194.2 23.3 212 74-339 54-274 (393)
193 3ecd_A Serine hydroxymethyltra 99.9 2E-23 6.8E-28 200.5 19.2 267 102-405 98-396 (425)
194 2vi8_A Serine hydroxymethyltra 99.9 1.6E-23 5.3E-28 200.0 17.4 321 31-406 24-387 (405)
195 2dgk_A GAD-beta, GADB, glutama 99.9 2E-23 6.9E-28 202.2 18.3 305 69-406 71-434 (452)
196 3ke3_A Putative serine-pyruvat 99.9 7.1E-23 2.4E-27 193.7 21.4 292 77-406 37-376 (379)
197 3h7f_A Serine hydroxymethyltra 99.9 1.2E-23 4.1E-28 203.3 15.6 321 32-405 46-413 (447)
198 3ju7_A Putative PLP-dependent 99.9 1.8E-22 6.3E-27 190.4 22.1 311 48-405 13-374 (377)
199 3nmy_A Xometc, cystathionine g 99.9 7.8E-22 2.7E-26 187.3 26.5 215 74-340 66-286 (400)
200 1ohv_A 4-aminobutyrate aminotr 99.9 2.2E-23 7.7E-28 202.5 15.9 344 28-406 60-471 (472)
201 3ri6_A O-acetylhomoserine sulf 99.9 3.5E-22 1.2E-26 191.0 23.7 278 73-403 80-429 (430)
202 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 2.8E-22 9.5E-27 193.3 22.5 305 50-404 42-434 (437)
203 3gbx_A Serine hydroxymethyltra 99.9 1.6E-22 5.5E-27 193.8 19.8 279 82-405 83-395 (420)
204 1js3_A DDC;, DOPA decarboxylas 99.9 1.4E-22 4.8E-27 198.0 18.0 331 48-405 84-473 (486)
205 2okj_A Glutamate decarboxylase 99.9 2.7E-22 9.4E-27 196.8 20.1 329 50-406 105-502 (504)
206 3hbx_A GAD 1, glutamate decarb 99.9 1E-21 3.4E-26 192.3 23.5 325 50-406 68-444 (502)
207 3jzl_A Putative cystathionine 99.9 3.2E-21 1.1E-25 182.9 24.8 230 69-340 54-302 (409)
208 2ctz_A O-acetyl-L-homoserine s 99.9 4.6E-21 1.6E-25 183.7 25.2 164 68-266 49-219 (421)
209 3vp6_A Glutamate decarboxylase 99.9 8.2E-22 2.8E-26 193.2 20.2 328 51-405 109-504 (511)
210 2z67_A O-phosphoseryl-tRNA(SEC 99.9 1.1E-21 3.9E-26 189.9 20.8 287 79-403 137-455 (456)
211 3ht4_A Aluminum resistance pro 99.9 2.7E-21 9.3E-26 184.9 23.1 230 76-341 66-309 (431)
212 2fq6_A Cystathionine beta-lyas 99.9 5.6E-21 1.9E-25 182.1 24.1 213 74-339 81-300 (415)
213 2qma_A Diaminobutyrate-pyruvat 99.9 1.3E-21 4.4E-26 191.7 20.1 329 48-406 111-496 (497)
214 2x3l_A ORN/Lys/Arg decarboxyla 99.9 3.3E-22 1.1E-26 192.9 15.0 285 71-405 53-352 (446)
215 3i16_A Aluminum resistance pro 99.9 7.3E-21 2.5E-25 181.1 23.8 228 74-340 72-319 (427)
216 3hvy_A Cystathionine beta-lyas 99.9 1.4E-20 4.7E-25 179.2 25.2 226 75-340 74-319 (427)
217 2fyf_A PSAT, phosphoserine ami 99.9 3.3E-22 1.1E-26 190.5 12.5 280 77-406 80-398 (398)
218 4ao9_A Beta-phenylalanine amin 99.9 1.4E-21 4.8E-26 186.6 16.1 333 27-406 83-446 (454)
219 3b8x_A WBDK, pyridoxamine 5-ph 99.9 2.4E-20 8.4E-25 177.0 22.3 281 49-378 13-334 (390)
220 2a7v_A Serine hydroxymethyltra 99.9 2.1E-20 7.3E-25 180.6 19.7 280 82-404 107-439 (490)
221 2jis_A Cysteine sulfinic acid 99.9 5E-20 1.7E-24 181.1 22.4 323 50-406 121-515 (515)
222 1c4k_A Protein (ornithine deca 99.8 2.8E-20 9.5E-25 187.6 19.6 302 73-405 171-565 (730)
223 4e1o_A HDC, histidine decarbox 99.8 1.1E-20 3.8E-25 184.1 15.7 329 51-406 92-478 (481)
224 3k40_A Aromatic-L-amino-acid d 99.8 2.2E-20 7.4E-25 181.5 16.0 328 51-406 87-471 (475)
225 1wyu_A Glycine dehydrogenase ( 99.8 5.5E-20 1.9E-24 177.3 18.5 280 77-403 110-437 (438)
226 2vyc_A Biodegradative arginine 99.8 2.4E-19 8.1E-24 182.5 19.6 176 76-272 206-402 (755)
227 4atq_A 4-aminobutyrate transam 99.8 3.7E-19 1.3E-23 170.6 18.2 346 27-405 60-454 (456)
228 4e3q_A Pyruvate transaminase; 99.8 4.9E-18 1.7E-22 163.4 20.0 351 28-406 64-468 (473)
229 3n75_A LDC, lysine decarboxyla 99.8 2.5E-18 8.7E-23 172.0 13.9 297 73-404 193-558 (715)
230 3e77_A Phosphoserine aminotran 99.7 7.3E-18 2.5E-22 157.5 10.5 313 48-407 23-376 (377)
231 4a0g_A Adenosylmethionine-8-am 99.7 1.9E-17 6.5E-22 169.6 12.3 343 32-407 381-829 (831)
232 3m5u_A Phosphoserine aminotran 99.7 1.6E-16 5.6E-21 147.8 14.8 318 31-406 4-360 (361)
233 3qm2_A Phosphoserine aminotran 99.7 1.9E-16 6.5E-21 148.8 13.4 286 75-407 72-386 (386)
234 3ou5_A Serine hydroxymethyltra 99.6 1.2E-14 4E-19 135.0 18.4 293 77-404 101-439 (490)
235 3hl2_A O-phosphoseryl-tRNA(SEC 99.6 6.4E-14 2.2E-18 130.7 21.4 302 77-405 114-460 (501)
236 3bc8_A O-phosphoseryl-tRNA(SEC 99.5 6.3E-13 2.2E-17 125.6 22.0 186 77-278 96-288 (450)
237 3gh5_A HEX1, beta-hexosaminida 84.4 5.8 0.0002 38.1 10.2 70 140-216 205-274 (525)
238 1jak_A Beta-N-acetylhexosamini 82.3 6.5 0.00022 37.7 9.7 69 141-216 181-249 (512)
239 1now_A Beta-hexosaminidase bet 81.5 3.6 0.00012 39.4 7.6 64 141-216 175-238 (507)
240 2gjx_A Beta-hexosaminidase alp 79.7 4.3 0.00015 38.9 7.4 65 141-216 169-233 (507)
241 4fgs_A Probable dehydrogenase 76.7 7.7 0.00026 33.8 7.6 102 99-208 29-135 (273)
242 1ofu_X SULA, hypothetical prot 74.9 23 0.00079 26.3 9.5 105 100-214 6-113 (119)
243 3rcn_A Beta-N-acetylhexosamini 68.3 6.1 0.00021 38.1 5.3 77 140-216 161-242 (543)
244 4g81_D Putative hexonate dehyd 67.6 31 0.001 29.5 9.2 101 99-207 9-117 (255)
245 1c7s_A Beta-N-acetylhexosamini 63.8 12 0.00043 38.1 6.7 75 140-216 334-418 (858)
246 3guy_A Short-chain dehydrogena 57.9 42 0.0014 27.7 8.3 95 106-206 6-102 (230)
247 3ozo_A N-acetylglucosaminidase 57.3 16 0.00056 35.4 6.0 64 141-216 211-274 (572)
248 1oft_A SULA, hypothetical prot 52.9 81 0.0028 24.7 11.4 106 99-214 47-155 (161)
249 4gqr_A Pancreatic alpha-amylas 52.3 8.8 0.0003 36.3 3.3 29 196-224 75-103 (496)
250 3zq4_A Ribonuclease J 1, RNAse 52.2 59 0.002 31.4 9.2 104 99-212 291-408 (555)
251 1fob_A Beta-1,4-galactanase; B 52.2 71 0.0024 28.4 9.2 75 140-224 12-86 (334)
252 2ya0_A Putative alkaline amylo 51.6 8.7 0.0003 38.6 3.3 28 197-224 254-281 (714)
253 2yl5_A Beta-N-acetylhexosamini 51.6 11 0.00038 35.3 3.8 68 141-216 32-113 (442)
254 3h7a_A Short chain dehydrogena 51.4 97 0.0033 25.9 9.7 99 99-206 7-113 (252)
255 1bqc_A Protein (beta-mannanase 51.3 37 0.0013 29.6 7.1 23 197-219 64-86 (302)
256 2e8y_A AMYX protein, pullulana 51.1 5.6 0.00019 40.0 1.8 29 197-225 315-343 (718)
257 3tpc_A Short chain alcohol deh 49.6 58 0.002 27.4 8.0 67 99-173 7-73 (257)
258 3rwb_A TPLDH, pyridoxal 4-dehy 49.3 37 0.0013 28.5 6.6 100 99-206 6-110 (247)
259 1g94_A Alpha-amylase; beta-alp 48.8 12 0.00041 35.1 3.6 30 197-226 64-93 (448)
260 1ea9_C Cyclomaltodextrinase; h 48.5 18 0.00061 35.3 4.9 32 194-225 215-246 (583)
261 3rd5_A Mypaa.01249.C; ssgcid, 48.1 53 0.0018 28.3 7.6 76 99-183 16-91 (291)
262 1lwj_A 4-alpha-glucanotransfer 47.8 16 0.00053 34.2 4.2 30 197-226 69-98 (441)
263 2yl6_A Beta-N-acetylhexosamini 47.1 12 0.0004 35.1 3.2 28 189-216 83-110 (434)
264 1ht6_A AMY1, alpha-amylase iso 46.7 22 0.00074 32.8 5.0 29 197-225 68-96 (405)
265 4hp8_A 2-deoxy-D-gluconate 3-d 46.7 70 0.0024 27.1 7.8 100 99-208 9-111 (247)
266 4dqx_A Probable oxidoreductase 46.1 49 0.0017 28.4 7.0 100 99-206 27-131 (277)
267 1wzl_A Alpha-amylase II; pullu 45.3 16 0.00056 35.6 4.1 32 195-226 217-248 (585)
268 1mxg_A Alpha amylase; hyperthe 45.2 18 0.00063 33.7 4.3 29 197-225 86-114 (435)
269 4eso_A Putative oxidoreductase 44.9 54 0.0018 27.7 7.0 99 100-206 9-112 (255)
270 1j0h_A Neopullulanase; beta-al 44.5 19 0.00065 35.1 4.4 31 196-226 221-251 (588)
271 1wza_A Alpha-amylase A; hydrol 43.9 20 0.00069 34.0 4.4 29 197-225 81-109 (488)
272 1gcy_A Glucan 1,4-alpha-maltot 43.8 19 0.00066 34.5 4.2 30 197-226 92-121 (527)
273 2dh2_A 4F2 cell-surface antige 43.5 19 0.00066 33.4 4.1 28 197-224 81-108 (424)
274 4aie_A Glucan 1,6-alpha-glucos 43.2 20 0.00067 34.5 4.2 28 197-224 79-106 (549)
275 2z1k_A (NEO)pullulanase; hydro 43.2 20 0.00068 33.8 4.2 29 197-225 96-124 (475)
276 4fn4_A Short chain dehydrogena 42.8 76 0.0026 27.0 7.5 100 99-207 7-116 (254)
277 2guy_A Alpha-amylase A; (beta- 42.8 19 0.00065 34.0 4.0 29 197-225 97-125 (478)
278 2ya1_A Putative alkaline amylo 42.7 13 0.00044 39.0 3.0 28 197-224 561-588 (1014)
279 1hvx_A Alpha-amylase; hydrolas 42.6 17 0.00058 34.8 3.6 28 197-224 81-108 (515)
280 3bh4_A Alpha-amylase; calcium, 42.4 17 0.00058 34.4 3.6 28 197-224 78-105 (483)
281 1ud2_A Amylase, alpha-amylase; 42.3 17 0.00059 34.4 3.6 28 197-224 80-107 (480)
282 1jae_A Alpha-amylase; glycosid 42.2 17 0.00059 34.3 3.6 30 197-226 74-103 (471)
283 1hjs_A Beta-1,4-galactanase; 4 42.2 29 0.001 31.0 4.9 37 188-224 50-86 (332)
284 4e6p_A Probable sorbitol dehyd 42.1 73 0.0025 26.8 7.4 99 100-206 9-112 (259)
285 3gvc_A Oxidoreductase, probabl 42.0 60 0.0021 27.8 6.9 100 99-206 29-133 (277)
286 3grp_A 3-oxoacyl-(acyl carrier 41.6 51 0.0018 28.1 6.3 67 99-173 27-93 (266)
287 1wpc_A Glucan 1,4-alpha-maltoh 41.6 18 0.00061 34.3 3.6 28 197-224 82-109 (485)
288 3ppi_A 3-hydroxyacyl-COA dehyd 41.5 1.1E+02 0.0037 26.1 8.5 67 99-173 30-96 (281)
289 1ua7_A Alpha-amylase; beta-alp 40.7 17 0.0006 33.7 3.3 30 197-226 74-103 (422)
290 3bk2_A RNAse J, metal dependen 39.5 1.6E+02 0.0054 28.4 10.0 79 124-212 337-423 (562)
291 3rjz_A N-type ATP pyrophosphat 39.2 1.7E+02 0.0059 24.5 9.2 99 101-215 8-120 (237)
292 3ged_A Short-chain dehydrogena 39.1 73 0.0025 27.0 6.7 95 106-207 7-106 (247)
293 2aaa_A Alpha-amylase; glycosid 39.1 20 0.00069 33.9 3.5 29 197-225 97-125 (484)
294 2wc7_A Alpha amylase, catalyti 39.1 20 0.00068 34.0 3.5 29 197-225 102-130 (488)
295 1zja_A Trehalulose synthase; s 38.5 26 0.00088 33.9 4.2 29 197-225 79-107 (557)
296 3dhu_A Alpha-amylase; structur 38.3 23 0.00077 33.2 3.7 30 196-225 82-111 (449)
297 3tzq_B Short-chain type dehydr 38.3 1.5E+02 0.0051 25.1 8.8 100 99-206 11-117 (271)
298 1m53_A Isomaltulose synthase; 38.1 26 0.0009 34.0 4.2 29 197-225 92-120 (570)
299 2o23_A HADH2 protein; HSD17B10 37.3 1.8E+02 0.0061 24.2 9.4 66 100-173 13-78 (265)
300 3tfo_A Putative 3-oxoacyl-(acy 37.1 1.1E+02 0.0037 26.0 7.6 99 100-206 5-111 (264)
301 3m07_A Putative alpha amylase; 37.1 30 0.001 34.0 4.5 32 195-226 200-231 (618)
302 3m1a_A Putative dehydrogenase; 37.0 94 0.0032 26.4 7.4 66 100-173 6-71 (281)
303 3sc4_A Short chain dehydrogena 36.8 1.8E+02 0.006 24.8 9.1 100 99-206 9-123 (285)
304 3twe_A Alpha4H; unknown functi 36.6 41 0.0014 16.6 3.1 18 316-333 8-25 (27)
305 3op4_A 3-oxoacyl-[acyl-carrier 36.5 85 0.0029 26.2 6.8 100 99-206 9-113 (248)
306 1uok_A Oligo-1,6-glucosidase; 36.3 29 0.001 33.5 4.2 29 197-225 78-106 (558)
307 4imr_A 3-oxoacyl-(acyl-carrier 36.1 2E+02 0.0068 24.4 10.7 102 99-206 33-139 (275)
308 4aef_A Neopullulanase (alpha-a 36.0 29 0.00099 34.3 4.2 30 195-224 283-312 (645)
309 4ibo_A Gluconate dehydrogenase 35.9 1.4E+02 0.0047 25.4 8.2 100 99-206 26-133 (271)
310 3gem_A Short chain dehydrogena 35.7 1.9E+02 0.0067 24.2 9.1 64 100-173 28-91 (260)
311 3edf_A FSPCMD, cyclomaltodextr 35.5 31 0.001 33.8 4.2 29 197-225 198-226 (601)
312 3faw_A Reticulocyte binding pr 35.5 21 0.00072 36.7 3.1 28 197-224 369-396 (877)
313 2yxb_A Coenzyme B12-dependent 35.1 60 0.002 25.4 5.2 57 142-211 41-97 (161)
314 1m7x_A 1,4-alpha-glucan branch 34.7 25 0.00086 34.5 3.5 31 195-225 202-232 (617)
315 3lyl_A 3-oxoacyl-(acyl-carrier 34.6 1.8E+02 0.0062 23.9 8.7 99 100-206 6-112 (247)
316 3aj7_A Oligo-1,6-glucosidase; 34.3 33 0.0011 33.5 4.2 29 197-225 87-115 (589)
317 1gjw_A Maltodextrin glycosyltr 34.0 22 0.00076 35.0 3.0 30 197-226 181-210 (637)
318 3uf0_A Short-chain dehydrogena 33.9 2.2E+02 0.0074 24.1 10.6 98 99-206 31-136 (273)
319 2zic_A Dextran glucosidase; TI 33.6 31 0.0011 33.2 3.9 29 197-225 78-106 (543)
320 2ze0_A Alpha-glucosidase; TIM 33.6 33 0.0011 33.1 4.1 29 197-225 78-106 (555)
321 2nu8_A Succinyl-COA ligase [AD 33.5 98 0.0034 26.8 6.8 48 163-219 76-123 (288)
322 3zu3_A Putative reductase YPO4 33.5 2.4E+02 0.0083 25.8 9.6 67 99-173 47-129 (405)
323 3k1d_A 1,4-alpha-glucan-branch 33.2 27 0.00093 35.0 3.5 32 194-225 309-340 (722)
324 2bhu_A Maltooligosyltrehalose 33.1 28 0.00097 34.0 3.6 31 196-226 191-221 (602)
325 2gjh_A Designed protein; oblig 32.5 28 0.00095 20.8 2.0 27 381-407 5-31 (62)
326 3bc9_A AMYB, alpha amylase, ca 32.3 29 0.00099 34.0 3.5 28 197-224 208-235 (599)
327 4b79_A PA4098, probable short- 32.3 2.2E+02 0.0077 23.8 9.8 97 99-207 11-107 (242)
328 2ew8_A (S)-1-phenylethanol deh 32.1 1.8E+02 0.006 24.1 8.2 99 100-206 8-112 (249)
329 1yht_A DSPB; beta barrel, hydr 31.8 26 0.00089 31.9 2.9 74 140-216 39-113 (367)
330 4aee_A Alpha amylase, catalyti 31.8 33 0.0011 34.2 3.9 30 196-225 310-339 (696)
331 3kvo_A Hydroxysteroid dehydrog 31.8 2.7E+02 0.0093 24.6 10.4 99 99-205 45-158 (346)
332 3n74_A 3-ketoacyl-(acyl-carrie 31.7 1.2E+02 0.0039 25.5 7.0 66 100-173 10-75 (261)
333 1i4n_A Indole-3-glycerol phosp 31.6 86 0.0029 26.7 5.9 50 161-219 109-158 (251)
334 1qho_A Alpha-amylase; glycosid 31.6 31 0.0011 34.4 3.6 28 197-224 107-134 (686)
335 1d3c_A Cyclodextrin glycosyltr 31.6 31 0.0011 34.4 3.6 28 197-224 115-142 (686)
336 3vgf_A Malto-oligosyltrehalose 31.5 30 0.001 33.4 3.5 30 197-226 167-196 (558)
337 1xp8_A RECA protein, recombina 31.4 2.3E+02 0.0079 25.5 9.1 114 98-216 73-206 (366)
338 1cyg_A Cyclodextrin glucanotra 31.3 32 0.0011 34.3 3.6 28 197-224 111-138 (680)
339 3l6e_A Oxidoreductase, short-c 30.8 88 0.003 25.9 6.0 98 101-206 5-107 (235)
340 4dyv_A Short-chain dehydrogena 30.7 1.4E+02 0.0048 25.4 7.4 100 99-206 28-133 (272)
341 3bzy_B ESCU; auto cleavage pro 30.7 29 0.00099 23.9 2.3 23 197-219 26-48 (83)
342 3bmv_A Cyclomaltodextrin gluca 30.6 33 0.0011 34.2 3.6 28 197-224 116-143 (683)
343 3pxx_A Carveol dehydrogenase; 30.4 82 0.0028 26.9 5.9 100 99-206 10-127 (287)
344 3l5o_A Uncharacterized protein 30.4 46 0.0016 28.7 4.0 74 125-211 140-213 (270)
345 3aml_A OS06G0726400 protein; s 30.2 33 0.0011 34.7 3.5 32 195-226 248-279 (755)
346 4fc7_A Peroxisomal 2,4-dienoyl 30.2 1.5E+02 0.005 25.2 7.4 100 99-206 27-135 (277)
347 3f9i_A 3-oxoacyl-[acyl-carrier 29.2 2.3E+02 0.0079 23.3 8.4 76 99-183 14-89 (249)
348 1ji1_A Alpha-amylase I; beta/a 29.1 39 0.0014 33.2 3.9 31 195-225 236-270 (637)
349 4gkb_A 3-oxoacyl-[acyl-carrier 29.0 1.9E+02 0.0065 24.5 7.8 100 99-206 7-112 (258)
350 3dgp_A RNA polymerase II trans 28.8 62 0.0021 22.0 3.6 28 197-224 32-59 (80)
351 2vr5_A Glycogen operon protein 28.8 42 0.0014 33.6 4.0 30 197-226 266-295 (718)
352 1bf2_A Isoamylase; hydrolase, 28.6 49 0.0017 33.4 4.5 30 197-226 272-301 (750)
353 3czg_A Sucrose hydrolase; (alp 28.5 39 0.0013 33.4 3.7 30 196-225 154-183 (644)
354 1g5a_A Amylosucrase; glycosylt 28.4 53 0.0018 32.3 4.6 29 197-225 162-190 (628)
355 3rih_A Short chain dehydrogena 28.4 2.8E+02 0.0095 23.8 9.0 100 99-206 41-149 (293)
356 2wsk_A Glycogen debranching en 28.2 36 0.0012 33.7 3.4 30 197-226 241-270 (657)
357 1hxh_A 3BETA/17BETA-hydroxyste 28.1 1.8E+02 0.006 24.2 7.5 66 100-173 7-72 (253)
358 1ur4_A Galactanase; hydrolase, 28.0 1.7E+02 0.0059 26.7 7.7 32 195-226 86-117 (399)
359 3dm5_A SRP54, signal recogniti 27.8 1.7E+02 0.0057 27.3 7.6 134 79-220 78-224 (443)
360 1f2d_A 1-aminocyclopropane-1-c 27.7 1.7E+02 0.006 25.8 7.7 17 139-155 118-134 (341)
361 3r1i_A Short-chain type dehydr 27.7 2.3E+02 0.0078 24.0 8.2 100 99-206 32-139 (276)
362 4egf_A L-xylulose reductase; s 27.5 2E+02 0.007 24.1 7.8 54 99-155 20-77 (266)
363 3sju_A Keto reductase; short-c 26.8 1.5E+02 0.0052 25.2 6.9 100 99-206 24-131 (279)
364 3ecs_A Translation initiation 26.6 2.7E+02 0.0093 24.5 8.4 106 96-218 119-230 (315)
365 3zss_A Putative glucanohydrola 26.6 41 0.0014 33.5 3.5 27 195-221 318-344 (695)
366 4dmm_A 3-oxoacyl-[acyl-carrier 26.4 1.3E+02 0.0044 25.5 6.3 100 99-206 28-136 (269)
367 3tqq_A Methionyl-tRNA formyltr 26.4 2.3E+02 0.008 24.8 8.1 80 163-256 13-94 (314)
368 3imf_A Short chain dehydrogena 26.2 2E+02 0.0067 24.0 7.5 101 99-207 6-114 (257)
369 3aie_A Glucosyltransferase-SI; 26.1 48 0.0016 33.8 3.9 30 195-224 690-719 (844)
370 3gaf_A 7-alpha-hydroxysteroid 26.1 1.7E+02 0.0059 24.4 7.1 100 99-206 12-118 (256)
371 3is3_A 17BETA-hydroxysteroid d 25.8 1.3E+02 0.0043 25.5 6.2 100 99-206 18-126 (270)
372 3k8k_A Alpha-amylase, SUSG; al 25.7 72 0.0025 31.6 5.0 30 196-225 105-134 (669)
373 3t7c_A Carveol dehydrogenase; 25.6 2.3E+02 0.0077 24.3 7.9 100 99-206 28-148 (299)
374 2wan_A Pullulanase; hydrolase, 25.4 49 0.0017 34.2 3.9 30 197-226 531-560 (921)
375 3oid_A Enoyl-[acyl-carrier-pro 25.3 2.5E+02 0.0086 23.4 8.0 100 99-206 4-112 (258)
376 2vt1_B Surface presentation of 25.1 41 0.0014 23.7 2.3 23 197-219 26-48 (93)
377 3dqp_A Oxidoreductase YLBE; al 25.1 2.3E+02 0.0079 22.6 7.5 91 106-211 5-97 (219)
378 3pzt_A Endoglucanase; alpha/be 25.0 41 0.0014 29.9 2.9 23 197-219 104-126 (327)
379 2whl_A Beta-mannanase, baman5; 25.0 44 0.0015 29.0 3.0 23 197-219 63-85 (294)
380 1ytl_A Acetyl-COA decarboxylas 24.9 1.1E+02 0.0039 24.2 5.2 46 162-217 21-67 (174)
381 3qlj_A Short chain dehydrogena 24.6 1.9E+02 0.0064 25.2 7.2 101 99-207 27-145 (322)
382 3ttq_A Dextransucrase; (beta/a 24.6 60 0.0021 33.9 4.2 30 195-224 910-939 (1108)
383 1uls_A Putative 3-oxoacyl-acyl 24.6 1.2E+02 0.0039 25.3 5.6 31 100-133 6-36 (245)
384 3rkr_A Short chain oxidoreduct 24.5 2.1E+02 0.0071 23.9 7.3 67 99-173 29-98 (262)
385 3vc3_A Beta-cyanoalnine syntha 24.3 38 0.0013 30.4 2.6 53 100-155 89-141 (344)
386 1vl8_A Gluconate 5-dehydrogena 24.3 2E+02 0.0069 24.1 7.2 66 100-173 22-91 (267)
387 2wkj_A N-acetylneuraminate lya 24.2 2E+02 0.0068 25.1 7.2 56 159-216 25-85 (303)
388 1x1t_A D(-)-3-hydroxybutyrate 23.9 2.9E+02 0.01 22.9 8.2 66 100-173 5-75 (260)
389 4h1h_A LMO1638 protein; MCCF-l 23.7 1.2E+02 0.0039 27.0 5.6 79 123-203 9-103 (327)
390 3t7y_A YOP proteins translocat 23.7 39 0.0013 24.0 1.9 23 197-219 41-63 (97)
391 3e03_A Short chain dehydrogena 23.6 3.3E+02 0.011 22.9 9.5 99 99-205 6-119 (274)
392 1y80_A Predicted cobalamin bin 23.4 1.4E+02 0.0047 24.3 5.7 72 127-211 89-167 (210)
393 3qp9_A Type I polyketide synth 23.4 4.8E+02 0.016 24.7 11.1 102 96-205 248-371 (525)
394 7a3h_A Endoglucanase; hydrolas 23.3 47 0.0016 29.1 2.9 24 197-220 79-102 (303)
395 3edm_A Short chain dehydrogena 23.3 3.2E+02 0.011 22.7 9.0 100 99-206 8-117 (259)
396 3jug_A Beta-mannanase; TIM-bar 23.2 49 0.0017 29.7 3.0 24 197-220 86-109 (345)
397 3vup_A Beta-1,4-mannanase; TIM 23.1 49 0.0017 28.8 3.0 23 197-219 89-111 (351)
398 2h1q_A Hypothetical protein; Z 23.0 80 0.0027 27.2 4.2 79 125-216 140-218 (270)
399 3s55_A Putative short-chain de 22.7 2.8E+02 0.0097 23.3 7.9 100 99-206 10-129 (281)
400 3c01_E Surface presentation of 22.6 42 0.0014 23.9 1.9 23 197-219 26-48 (98)
401 1tzj_A ACC deaminase, 1-aminoc 22.6 3E+02 0.01 24.1 8.3 17 139-155 115-131 (338)
402 1hdc_A 3-alpha, 20 beta-hydrox 22.5 2.1E+02 0.0072 23.8 6.9 66 100-173 6-71 (254)
403 3oec_A Carveol dehydrogenase ( 22.4 2.8E+02 0.0097 24.0 8.0 100 99-206 46-165 (317)
404 2yv1_A Succinyl-COA ligase [AD 22.4 1.1E+02 0.0039 26.5 5.2 48 164-220 83-130 (294)
405 3ucq_A Amylosucrase; thermosta 22.3 58 0.002 32.2 3.6 29 197-225 160-188 (655)
406 3v2h_A D-beta-hydroxybutyrate 22.2 2.9E+02 0.0098 23.4 7.8 99 100-206 26-134 (281)
407 1tvn_A Cellulase, endoglucanas 22.0 57 0.002 28.2 3.2 24 197-220 78-101 (293)
408 3ftp_A 3-oxoacyl-[acyl-carrier 21.9 2.4E+02 0.0082 23.7 7.2 100 99-206 28-135 (270)
409 3tox_A Short chain dehydrogena 21.7 2.5E+02 0.0087 23.8 7.4 100 99-206 8-116 (280)
410 3klk_A Glucansucrase; native f 21.7 65 0.0022 33.7 3.8 29 196-224 744-772 (1039)
411 1ccw_A Protein (glutamate muta 21.5 1.3E+02 0.0046 22.5 4.9 58 141-211 25-82 (137)
412 3kux_A Putative oxidoreductase 21.5 2.9E+02 0.0098 24.4 7.9 70 135-217 55-124 (352)
413 2jah_A Clavulanic acid dehydro 21.3 2.6E+02 0.009 23.0 7.3 98 100-206 8-114 (247)
414 1pii_A N-(5'phosphoribosyl)ant 21.2 1.7E+02 0.0059 27.3 6.3 51 160-219 115-165 (452)
415 2zr9_A Protein RECA, recombina 21.0 2.2E+02 0.0076 25.3 7.0 114 98-216 60-193 (349)
416 3q0i_A Methionyl-tRNA formyltr 20.9 2.5E+02 0.0087 24.7 7.1 80 163-256 18-99 (318)
417 3u9l_A 3-oxoacyl-[acyl-carrier 20.8 2.8E+02 0.0094 24.2 7.5 98 100-205 6-116 (324)
418 3sx2_A Putative 3-ketoacyl-(ac 20.8 2.6E+02 0.0089 23.5 7.2 97 99-205 13-127 (278)
419 1g01_A Endoglucanase; alpha/be 20.7 58 0.002 29.3 3.0 24 197-220 89-112 (364)
420 2cc0_A Acetyl-xylan esterase; 20.7 1.8E+02 0.0063 23.1 5.9 67 141-214 112-179 (195)
421 1u94_A RECA protein, recombina 20.7 1.8E+02 0.0063 26.0 6.3 114 98-216 62-195 (356)
422 3uve_A Carveol dehydrogenase ( 20.6 2.8E+02 0.0095 23.5 7.4 32 99-133 11-42 (286)
423 2yvq_A Carbamoyl-phosphate syn 20.6 2.8E+02 0.0095 20.9 9.7 83 125-218 49-132 (143)
424 3tjr_A Short chain dehydrogena 20.6 2.1E+02 0.0072 24.6 6.6 99 99-205 31-137 (301)
425 1egz_A Endoglucanase Z, EGZ, C 20.6 64 0.0022 27.8 3.2 23 197-219 76-98 (291)
426 3ktb_A Arsenical resistance op 20.5 95 0.0033 22.4 3.4 65 140-205 36-102 (106)
427 3osu_A 3-oxoacyl-[acyl-carrier 20.5 3.6E+02 0.012 22.1 8.8 99 100-206 5-112 (246)
428 3lf2_A Short chain oxidoreduct 20.3 2.5E+02 0.0087 23.4 7.0 101 99-207 8-118 (265)
429 3db2_A Putative NADPH-dependen 20.3 3.9E+02 0.013 23.5 8.6 73 135-220 54-126 (354)
430 3v2g_A 3-oxoacyl-[acyl-carrier 20.2 3.2E+02 0.011 23.0 7.7 100 99-206 31-139 (271)
431 3pgx_A Carveol dehydrogenase; 20.1 1.6E+02 0.0055 24.9 5.7 32 99-133 15-46 (280)
No 1
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=100.00 E-value=5.4e-60 Score=450.08 Aligned_cols=396 Identities=46% Similarity=0.766 Sum_probs=342.1
Q ss_pred cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435 5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS 84 (407)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~ 84 (407)
+.|.++...|+++|+++...+++++.+ +|||++|.+.|++|+|+..+.|+++...+. +....+.|.|..|+++||+++
T Consensus 19 ~~~~~v~~~p~d~i~~l~~~~~~d~~~-kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~-~~~~~~~Y~p~~G~p~lr~ai 96 (420)
T 4h51_A 19 ERWQKIQAQAPDVIFDLAKRAAAAKGP-KANLVIGAYRDEQGRPYPLRVVRKAEQLLL-DMNLDYEYLPISGYQPFIDEA 96 (420)
T ss_dssp HHHHTCCCCCCCHHHHHHHHHHHCCSS-CEECCSCCCBCTTSCBCCCHHHHHHHHHHH-HTTCCCCCCCTTCCHHHHHHH
T ss_pred HHHhCCCCCCCChHHHHHHHHhcCCCC-CEEeecCcccCCCCCCCCCHHHHHHHHHHh-cCCCCCCCCCcCChHHHHHHH
Confidence 467889999999999999999887665 999999999999999988888888877776 345567899999999999999
Q ss_pred HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh--hcCCCeEEecCCCCCChHHHHhhcCce-eeEEEeecCCCC
Q 015435 85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR--HYHQLTIYIPQPTWGNHPKVFTLAGLS-VKTYRYYDPATR 161 (407)
Q Consensus 85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~--~~~gd~Vi~~~p~y~~~~~~~~~~G~~-~~~v~~~~~~~~ 161 (407)
++++++.... .+.+..++|.|||+|+..++.++.. +.+||+|++++|+|++|..+++.+|.+ +..++..++.++
T Consensus 97 a~~~~g~~~~---~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~ 173 (420)
T 4h51_A 97 VKIIYGNTVE---LENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTV 173 (420)
T ss_dssp HHHHHC---C---GGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGT
T ss_pred HHHhcCCCcc---ccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeecccccccc
Confidence 9999775432 3566667799999999888655543 358999999999999999999999997 556666666778
Q ss_pred CcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc
Q 015435 162 GLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD 241 (407)
Q Consensus 162 ~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~ 241 (407)
.+|.+.+.+.+...+....++++++||||||.+++.++|++|+++|+++++++|+|++|++|.+++.+.+...+..+.+.
T Consensus 174 ~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~ 253 (420)
T 4h51_A 174 SLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARR 253 (420)
T ss_dssp EECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT
T ss_pred CCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhh
Confidence 89999999988766666677777999999999999999999999999999999999999999998655555666666677
Q ss_pred CCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435 242 GGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM 321 (407)
Q Consensus 242 ~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 321 (407)
.+.++++.||||.|+++|+|+||+.+...+.+...++...+....+..+++++..+|.++...+.+..+..+|.+.++.+
T Consensus 254 ~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m 333 (420)
T 4h51_A 254 GIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAM 333 (420)
T ss_dssp TCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred CceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 78999999999999999999999965566666667777777777788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHH
Q 015435 322 ADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHA 401 (407)
Q Consensus 322 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~ 401 (407)
+++++++|+.+.+.|++.+.+..|.++.+++|+|.|.+++.+++. +|+++||.+.++||||+++++++.+++++++|.+
T Consensus 334 ~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls~e~v~-~L~e~~Vy~~~~gRis~Agl~~~ni~~~a~aI~~ 412 (420)
T 4h51_A 334 AERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLSKAQCE-YCQNHNIFITVSGRANMAGLTHETALMLAQTIND 412 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCCHHHHH-HHHHTTEECCTTCEEEGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcCHHHHH-HHHhCCEEEcCCCEEEeccCCHHHHHHHHHHHHH
Confidence 999999999999999999877778888899999999999998885 4577999999999999998899999999999999
Q ss_pred HHHhh
Q 015435 402 AVTRM 406 (407)
Q Consensus 402 ~l~~~ 406 (407)
++++.
T Consensus 413 vvr~i 417 (420)
T 4h51_A 413 AVRNV 417 (420)
T ss_dssp HHC--
T ss_pred HHHHh
Confidence 99764
No 2
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=100.00 E-value=3.9e-59 Score=444.30 Aligned_cols=396 Identities=31% Similarity=0.551 Sum_probs=335.0
Q ss_pred cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435 5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS 84 (407)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~ 84 (407)
++|.++...++++++++...+++...+++|||++|.+.++++.+.+++.+.++.. +..+....++|++..|.++||+++
T Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~ai 81 (405)
T 3k7y_A 3 KLLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLT 81 (405)
T ss_dssp CGGGGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHH
T ss_pred chhhcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHH
Confidence 3899999999999999999998877789999999998788886666677777665 521134567899999999999999
Q ss_pred HHHHhCCCCCCCCCCce--EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC
Q 015435 85 AKLILGADSPAIKDNRV--TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG 162 (407)
Q Consensus 85 a~~~~~~~~~~~~~~~i--~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 162 (407)
++++.+.++..++++++ ++ |+|+++|+.++..++..+.+ |+|++++|+|.+|...++.+|.+++.+|+.++++++
T Consensus 82 a~~~~~~~~~~~~~~~i~i~~--t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 158 (405)
T 3k7y_A 82 QNLIFGNNSKYIEDKKICTIQ--CIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLID 158 (405)
T ss_dssp HHHHHCSSCTTTTTTCEEEEE--EEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTE
T ss_pred HHHHcCCCCccccccceEEEE--cCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCC
Confidence 99998776665666654 67 99999999999655543338 999999999999999999999999999986555689
Q ss_pred cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435 163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG 242 (407)
Q Consensus 163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~ 242 (407)
+|++++++.+.+.+.+++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.+.+..++..+....
T Consensus 159 ~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~ 238 (405)
T 3k7y_A 159 INYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKN 238 (405)
T ss_dssp ECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTT
T ss_pred cCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcC
Confidence 99999999998545567777755669999999999999999999999999999999999999864333445555555556
Q ss_pred CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435 243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA 322 (407)
Q Consensus 243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 322 (407)
+++++++||||+|+++|+|+||++.+++++++.+++...+....+..+++++.++|.++..++.+..+.+.|.++++.++
T Consensus 239 ~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~ 318 (405)
T 3k7y_A 239 IAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLS 318 (405)
T ss_dssp CCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 78999999999999999999998534567887777777777666666667888999999999998877778888999999
Q ss_pred HHHHHHHHHHHHHHH----hcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHH
Q 015435 323 DRIISMRQQLFDALS----ARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDA 398 (407)
Q Consensus 323 ~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~ 398 (407)
++++++|+++.+.|+ +.|.+..+.+..|++|||.|++++.+++.++ +++||.+.|+||||+++++++++++++++
T Consensus 319 ~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~~~~~~L-~~~gV~v~p~~Ris~a~~~~~~i~~~~~~ 397 (405)
T 3k7y_A 319 QRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLAKIAEHL-KTHHIYIINNGRINVSGITKNNVDYIADK 397 (405)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGGGGTTTT-TTTTEECCTTSEEEGGGCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCHHHHHHH-HHCCEeecCCCeEEEeccCHHHHHHHHHH
Confidence 999999999999999 8875555788899999999999877777666 88999999999999998889999999999
Q ss_pred HHHHHHh
Q 015435 399 IHAAVTR 405 (407)
Q Consensus 399 l~~~l~~ 405 (407)
|+++++.
T Consensus 398 i~~~~~~ 404 (405)
T 3k7y_A 398 ICLSLSQ 404 (405)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9998864
No 3
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=100.00 E-value=4.1e-54 Score=417.23 Aligned_cols=404 Identities=44% Similarity=0.754 Sum_probs=341.2
Q ss_pred ccccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHh-ccccccccCCCCCCcHHHHH
Q 015435 4 ESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV-NDQSRVKEYLPIVGLVDFNK 82 (407)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~g~~~l~~ 82 (407)
+++|.++...|+++++.+.+.++++..+.+|||++|.|.|..+.+.+.+.+.++...+. ++.....+|.+..|.+++|+
T Consensus 22 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~ 101 (448)
T 3meb_A 22 MSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLE 101 (448)
T ss_dssp CCTTTTCCCCCCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHH
T ss_pred hhHHhcCCCCCCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHH
Confidence 35899999999999999999999888888999999999776665556666666655553 11234677989999999999
Q ss_pred HHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh----hcCceeeEEEeecC
Q 015435 83 LSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT----LAGLSVKTYRYYDP 158 (407)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~----~~G~~~~~v~~~~~ 158 (407)
++++++++.....+++++|++++|+||++++.++..++..+.+||+|++++|+|.++...++ ..|.+++.+|+.++
T Consensus 102 ~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 181 (448)
T 3meb_A 102 AAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRK 181 (448)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCT
T ss_pred HHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEecccc
Confidence 99999976543333458998888999999999976567778899999999999999999999 99999999998655
Q ss_pred C-CCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHH
Q 015435 159 A-TRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM 237 (407)
Q Consensus 159 ~-~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~ 237 (407)
+ ++.+|++++++.+.+.+....++++++||||||++++.+++++|+++|++||+++|+||+|+++.+++.+.+.+++..
T Consensus 182 ~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~ 261 (448)
T 3meb_A 182 DGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRM 261 (448)
T ss_dssp TSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHH
T ss_pred ccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHH
Confidence 5 689999999999985444456666699999999999999999999999999999999999999998753334466666
Q ss_pred HHHcCCcEEEEEecCccccccCCCcceeEEee--------cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChh
Q 015435 238 FVADGGECLVAQSYAKNMGLYGERVGALSIVC--------KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDST 309 (407)
Q Consensus 238 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (407)
+.....+++++.||||.||++|+|+||+.+++ ++++..+.+...+....+..+.+++.+++.++..++.+..
T Consensus 262 ~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~ 341 (448)
T 3meb_A 262 FVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKR 341 (448)
T ss_dssp HHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHH
T ss_pred HhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChH
Confidence 66667889999999999999999999985446 6666666777777777777777899999999999999988
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CcccccCCceeEEecCCCHHHHHHhHhhccEEEcCC-CeEE
Q 015435 310 MYKEWTLELKAMADRIISMRQQLFDALSARGTPG-----DWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSD-GRIS 383 (407)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g-gRis 383 (407)
+.++|.+.+++.+++++++++++.+.|++.+.+. .+.+..+++++|.|.+++.+++..+++++||.+.|| ||||
T Consensus 342 l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gV~v~~G~gRis 421 (448)
T 3meb_A 342 LLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLTPEHVDYLKEKWSIYLVKAGGRMS 421 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEEECSGGGEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCCHHHHHHHHHhCCEEEeCCCcEEE
Confidence 8888988899999999999999999999885443 366778899999999999999999999999999995 5999
Q ss_pred ecCCCCCChhHHHHHHHHHHHhhC
Q 015435 384 MAGLSSKTVPHLTDAIHAAVTRMG 407 (407)
Q Consensus 384 ~~~~~~e~i~~~~~~l~~~l~~~~ 407 (407)
++.++++++++++++|++++++++
T Consensus 422 ~a~~~~~~i~~~~~~l~~~l~~~~ 445 (448)
T 3meb_A 422 MCGLTESNCDYVAEAIHDAVTKLP 445 (448)
T ss_dssp GGGCCTTTHHHHHHHHHHHHHHSC
T ss_pred EecCCHHHHHHHHHHHHHHHHhcc
Confidence 987788999999999999998764
No 4
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=100.00 E-value=1.4e-53 Score=410.65 Aligned_cols=395 Identities=44% Similarity=0.753 Sum_probs=330.8
Q ss_pred ccccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCcccc-chhHHHHHHHHhccccccccCCCCCCcHHHHH
Q 015435 4 ESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLV-LNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNK 82 (407)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~ 82 (407)
+++++|+...++++++++...+.++.++++|||++|.+.++++.+.+ +.+.+++.+.+. ....++|.+..|.+++|+
T Consensus 22 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~--~~~~~~Y~~~~g~~~lr~ 99 (420)
T 4f4e_A 22 MSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVE--AGLPRGYLPIDGIAAYDA 99 (420)
T ss_dssp CCTTTTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHH--TCCCCCCCCTTCCHHHHH
T ss_pred cCHhhcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhc--cCCCCCCCCCCCcHHHHH
Confidence 35899999999999999999888777789999999988777874444 345555555554 334578999999999999
Q ss_pred HHHHHHhCCCCCCCCCC--ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCC
Q 015435 83 LSAKLILGADSPAIKDN--RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPAT 160 (407)
Q Consensus 83 ~~a~~~~~~~~~~~~~~--~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~ 160 (407)
++++++.+.....++++ +|++ |+|+++++.++++++..+.+||+|++++|+|.++...++..|.+++.+|+.++++
T Consensus 100 ~ia~~l~~~~~~~~~~~~~~i~~--t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~ 177 (420)
T 4f4e_A 100 SVQKLLLGDDSPLIAAGRVVTAQ--ALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKT 177 (420)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEE--EEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTT
T ss_pred HHHHHhcCCCccccccCceEEEE--CCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeecccc
Confidence 99999976554333567 8999 9999999999976677788999999999999999999999999999999865667
Q ss_pred CCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435 161 RGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA 240 (407)
Q Consensus 161 ~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~ 240 (407)
+++|++.+++.+.+.+....++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++ +.+..++..+..
T Consensus 178 ~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~-~~~~~~~~~~~~ 256 (420)
T 4f4e_A 178 NGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESI-EADAAAVRLFAA 256 (420)
T ss_dssp TEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCT-TGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCc-chhhHHHHHHHh
Confidence 8999999999997543344455559999999999999999999999999999999999999999863 224556666666
Q ss_pred cCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHH
Q 015435 241 DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKA 320 (407)
Q Consensus 241 ~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 320 (407)
..+++++++||||.++++|+|+||++.++++++..+.+...+....+..+.+++.+++.++..++.+..+.+.|.+++++
T Consensus 257 ~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 336 (420)
T 4f4e_A 257 ANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGE 336 (420)
T ss_dssp TTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 67889999999999999999999984345677766666666666655566678899999999999988777778888999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHH
Q 015435 321 MADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIH 400 (407)
Q Consensus 321 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~ 400 (407)
++++++++++++.+.|++.+....+.+..+.+|+|.|++++.+.+..+++++||.+.|++||+++.++++++++++++|+
T Consensus 337 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~gI~v~~~~Ris~~~~~~~~i~~~~~~l~ 416 (420)
T 4f4e_A 337 MRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLTSAQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAIA 416 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCCHHHHHHHHHhCCEEecCCCeEEEecCCHHHHHHHHHHHH
Confidence 99999999999999999874222377788899999999999998999998899999999999998778899999999999
Q ss_pred HHH
Q 015435 401 AAV 403 (407)
Q Consensus 401 ~~l 403 (407)
+++
T Consensus 417 ~~l 419 (420)
T 4f4e_A 417 AVL 419 (420)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 5
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=100.00 E-value=1.4e-52 Score=401.22 Aligned_cols=398 Identities=54% Similarity=0.943 Sum_probs=329.2
Q ss_pred cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435 5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS 84 (407)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~ 84 (407)
++|..+...+++++++..+.++....+++|||++|+|+|..+.|...+.+.+++..+. ......+|.+..|.+++|+++
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~-~~~~~~~Y~~~~g~~~lr~~i 80 (401)
T 7aat_A 2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIA-AKKMDKEYLPIAGLADFTRAS 80 (401)
T ss_dssp CSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHH-HTTCCCCCCCTTCCHHHHHHH
T ss_pred ChhhcCCCCCCChhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhc-ccccccCCCCCCCCHHHHHHH
Confidence 5889999999999999999898877788999999998666653444455666555554 123466798889999999999
Q ss_pred HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHH-hhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435 85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA-RHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL 163 (407)
Q Consensus 85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~-~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~ 163 (407)
++++...++..+++++|++++|+|+++++.+++..+. .+.+||+|++++|+|.++...++..|.+++.+|+.++.++++
T Consensus 81 a~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (401)
T 7aat_A 81 AELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSL 160 (401)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEE
T ss_pred HHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCcc
Confidence 9999766666666789966559999999999865443 236899999999999999999999999999999865567899
Q ss_pred ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435 164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG 243 (407)
Q Consensus 164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~ 243 (407)
|++.+++.+.+.+....++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++.+.+..++..+....+
T Consensus 161 d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~ 240 (401)
T 7aat_A 161 DFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 240 (401)
T ss_dssp CHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred CHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCC
Confidence 99999888865323334445599999999999999999999999999999999999999998643223445555556678
Q ss_pred cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD 323 (407)
Q Consensus 244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (407)
++++++||||.|+++|+|+||++...++++..+.+...+....+..+.+++..++.++..++.+..+.+.|.+++++.++
T Consensus 241 ~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 320 (401)
T 7aat_A 241 DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMAD 320 (401)
T ss_dssp CCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999984233567666667777777766667788888899998889888777778888999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHHHH
Q 015435 324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~~l 403 (407)
+++++++++.+.|++.+.+..+.+..|++++|.|++++.+.+..+++++||.+.+++||+++..+++++++++++|++++
T Consensus 321 ~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~~~Ris~~~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 321 RIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCCHHHHHHHHHhCCEeccCCCeEEeccCChhhHHHHHHHHHHHh
Confidence 99999999999999886443477778899999999999998988889899999999999998778888999999999876
No 6
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=100.00 E-value=4.7e-52 Score=398.66 Aligned_cols=393 Identities=43% Similarity=0.752 Sum_probs=315.3
Q ss_pred cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435 5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS 84 (407)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~ 84 (407)
++|+++...+++++++....++++..+++|||++|.|++. +.++.+.+++.++. ....++|.+..|.+++|+++
T Consensus 15 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~---~~~~~v~~a~~~a~---~~~~~~y~~~~g~~~lr~~i 88 (409)
T 4eu1_A 15 QTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDD---ADQPFVLECVKQAT---LGTNMDYAPVTGIASFVEEA 88 (409)
T ss_dssp ------------CHHHHHHHHHHCCCSSCEECCCSSCCCT---TSCCCCCHHHHTCC---CCSCCCCCCTTCCHHHHHHH
T ss_pred hHhhcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECC---CCCEeecHHHHhcC---ccccccCCCCCCcHHHHHHH
Confidence 4789999999999999999898877889999999997443 33444555554442 34567899999999999999
Q ss_pred HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435 85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL 163 (407)
Q Consensus 85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~ 163 (407)
++++.+.....+++++|.+++|.|+++++.++..++.. +.+||+|++++|+|.++...++..|.+++.+|+.+++++++
T Consensus 89 a~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~ 168 (409)
T 4eu1_A 89 QKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGL 168 (409)
T ss_dssp HHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEE
T ss_pred HHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcC
Confidence 99997655443346788544499999999987654443 35889999999999999999999999999999865667899
Q ss_pred ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435 164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG 243 (407)
Q Consensus 164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~ 243 (407)
|++++++.+.+.+.+..++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++...+..++..+....+
T Consensus 169 d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 248 (409)
T 4eu1_A 169 NLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVP 248 (409)
T ss_dssp CHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSS
T ss_pred cHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCC
Confidence 99999999975444556666699999999999999999999999999999999999999998642222345555555567
Q ss_pred cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD 323 (407)
Q Consensus 244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (407)
++++++||||.+|++|+|+||+.+++++++..+.+...+....+..+.+++.++|.++..++++..+.++|.+..++.++
T Consensus 249 ~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 328 (409)
T 4eu1_A 249 NLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSS 328 (409)
T ss_dssp CCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 88999999999999999999963337778777777777777666666788899999999999988777788888899999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHHHH
Q 015435 324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~~l 403 (407)
+++++++++.+.|++.|.+..+.+..+.+++|.|.+++.+.+..+++++||.+.|++||+++..+++++++++++|++++
T Consensus 329 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~p~~Ri~~~~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 329 RIAEVRKRLVSELKACGSVHDWSHIERQVGMMAYTGLTREQVELLRSEYHIYMTLNGRAAVSGLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHSCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcceecCCceEEEEeCCCHHHHHHHHHcCCEEEcCCCEEEEEecCHhhHHHHHHHHHHHh
Confidence 99999999999999987544467778899999999999888889998899999999999999888899999999999876
No 7
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=100.00 E-value=1.2e-50 Score=387.28 Aligned_cols=393 Identities=38% Similarity=0.709 Sum_probs=323.2
Q ss_pred ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCcccc-chhHHHHHH-HHhccccccccCCCCCCcHHHHHH
Q 015435 6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLV-LNVVRKAEQ-LLVNDQSRVKEYLPIVGLVDFNKL 83 (407)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~y~~~~g~~~l~~~ 83 (407)
+|.++...+++.++.+...+..+..+++|||+.|.+.++++.+.+ +.+.+++.+ .+. ....++|.+..|..++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~--~~~~~~y~~~~g~~~lr~~ 78 (397)
T 3fsl_A 1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQ--PHGASLYLPMEGLNCYRHA 78 (397)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHTCCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHS--CCCCCCCCCTTCCHHHHHH
T ss_pred CcccCCCCCCCchhhHHHHHhcCCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccC--ccccccCCCCCchHHHHHH
Confidence 467888889999999998888877889999999987777773333 455555555 443 3345679888999999999
Q ss_pred HHHHHhCCCCCCCCCC--ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCC
Q 015435 84 SAKLILGADSPAIKDN--RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATR 161 (407)
Q Consensus 84 ~a~~~~~~~~~~~~~~--~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~ 161 (407)
+++++.......++++ +|++ |+|+++++.++++++..+.+||+|+++.|+|.++...++..|.+++.+++.+++++
T Consensus 79 la~~~~~~~~~~~~~~~~~i~~--t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (397)
T 3fsl_A 79 IAPLLFGADHPVLKQQRVATIQ--TLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATN 156 (397)
T ss_dssp HHHHHHCTTCHHHHTTCEEEEE--ESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTT
T ss_pred HHHHHhcCCcccccccceEEEE--cCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCC
Confidence 9999966554333567 8999 99999999999766666889999999999999999999999999999998555678
Q ss_pred CcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc
Q 015435 162 GLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD 241 (407)
Q Consensus 162 ~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~ 241 (407)
++|++++++.+.+.+....++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++ +.+..++..+...
T Consensus 157 ~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~ 235 (397)
T 3fsl_A 157 GVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIASA 235 (397)
T ss_dssp EECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCT-TGGGHHHHHHHHT
T ss_pred cCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCc-ccccHHHHHHHhc
Confidence 999999999997543344555559999999999999999999999999999999999999999862 2244566555566
Q ss_pred CCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435 242 GGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM 321 (407)
Q Consensus 242 ~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 321 (407)
.+++++++||||.++++|+|+||++..+++++..+++...+....+..+.+++.+++.++..++.+..+.+.|.+++++.
T Consensus 236 ~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 315 (397)
T 3fsl_A 236 GLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEM 315 (397)
T ss_dssp TCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 78999999999999999999999942235666666666655555455556778899999999999887776777888999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHH
Q 015435 322 ADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHA 401 (407)
Q Consensus 322 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~ 401 (407)
+++++++++++.+.|++.+....+.+..+.+++|.|++++.+.+..+++++||.+.||+||+++..+++++++++++|++
T Consensus 316 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~Ris~~~~~~~~i~~~~~~l~~ 395 (397)
T 3fsl_A 316 RTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAA 395 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTCEEEGGGCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCCHHHHHHHHHhCCEEECCCCeEEEEecCHhhHHHHHHHHHh
Confidence 99999999999999998742212677788899999999999888888999999999999999987788999999999987
Q ss_pred HH
Q 015435 402 AV 403 (407)
Q Consensus 402 ~l 403 (407)
++
T Consensus 396 ~l 397 (397)
T 3fsl_A 396 VM 397 (397)
T ss_dssp HC
T ss_pred hC
Confidence 63
No 8
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=100.00 E-value=1.9e-49 Score=380.97 Aligned_cols=401 Identities=51% Similarity=0.890 Sum_probs=321.9
Q ss_pred cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435 5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS 84 (407)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~ 84 (407)
++|+++...++++++++.+.+.+.+++++|||+.|.+.++++.+.+++.+.+++.....+....++|.+..|..++|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~l 83 (412)
T 1ajs_A 4 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA 83 (412)
T ss_dssp CTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred chhhhCcccCCchHHHHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHH
Confidence 48999999999999999888876667899999999987667655555555555554431222456798889999999999
Q ss_pred HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCC-----CeEEecCCCCCChHHHHhhcCce-eeEEEeecC
Q 015435 85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ-----LTIYIPQPTWGNHPKVFTLAGLS-VKTYRYYDP 158 (407)
Q Consensus 85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~g-----d~Vi~~~p~y~~~~~~~~~~G~~-~~~v~~~~~ 158 (407)
++++.+.++..+++++|++++|+|++++++++.+++..+.+| |+|+++.|+|.++...++..|.+ ++.+++..+
T Consensus 84 a~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 163 (412)
T 1ajs_A 84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDT 163 (412)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEET
T ss_pred HHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecC
Confidence 999966554444568887766999999999997666667799 99999999999999999999999 999998544
Q ss_pred CCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHH
Q 015435 159 ATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF 238 (407)
Q Consensus 159 ~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~ 238 (407)
+++++|++++++.+.+.+.+..++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++.+....++..+
T Consensus 164 ~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~ 243 (412)
T 1ajs_A 164 EKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243 (412)
T ss_dssp TTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred CCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHH
Confidence 56789999999998743223344444999999999999999999999999999999999999999875310123344444
Q ss_pred HHcCCcEEEEEecCccccccCCCcceeEEee--cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHH
Q 015435 239 VADGGECLVAQSYAKNMGLYGERVGALSIVC--KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTL 316 (407)
Q Consensus 239 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (407)
....++++++.|+||.++++|+|+||+ ++ ++++..+.+...+....+..+.+++.++|.++..++++..+.+.|.+
T Consensus 244 ~~~~~~~i~~~s~sK~~~~~G~riG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 321 (412)
T 1ajs_A 244 VSEGFELFCAQSFSKNFGLYNERVGNL--TVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTG 321 (412)
T ss_dssp HHTTCCEEEEEECTTTSCCGGGCEEEE--EEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHH
T ss_pred hccCCcEEEEEecccccCCCCcceEEE--EEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHH
Confidence 445678999999999999889999999 56 36665556666665544444445788999999999988755555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHH
Q 015435 317 ELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLT 396 (407)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~ 396 (407)
++++.+++++++++++.+.|++.+.+..+.+..+.+++|.|++++.+.+..+++++||.+.++.||+++..+++++++++
T Consensus 322 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~Ris~~~~~~~~i~~~~ 401 (412)
T 1ajs_A 322 NVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVA 401 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTSEEEGGGCCTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCCHHHHHHHHHhCCEEecCCcEEEeeeCCHHHHHHHH
Confidence 78899999999999999999987633236767788999999999887888888889999999889999965899999999
Q ss_pred HHHHHHHHhhC
Q 015435 397 DAIHAAVTRMG 407 (407)
Q Consensus 397 ~~l~~~l~~~~ 407 (407)
++|++++++++
T Consensus 402 ~~l~~~l~~~~ 412 (412)
T 1ajs_A 402 TSIHEAVTKIQ 412 (412)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhcC
Confidence 99999998764
No 9
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=100.00 E-value=1.9e-49 Score=380.96 Aligned_cols=401 Identities=42% Similarity=0.757 Sum_probs=320.6
Q ss_pred cccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHH-HhccccccccCCCCCCcHHHHHH
Q 015435 5 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQL-LVNDQSRVKEYLPIVGLVDFNKL 83 (407)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~y~~~~g~~~l~~~ 83 (407)
+||+++...++++++...+.+.+.+++++|||+.|.++|+++.+.+++.+.+++.. .. .....++|.+..|.+++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~-~~~~~~~y~~~~g~~~lr~~ 81 (412)
T 1yaa_A 3 TLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHN-DSSYNHEYLGITGLPSLTSN 81 (412)
T ss_dssp TTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHT-CTTCCCCCCCTTCCHHHHHH
T ss_pred chhccCcccCCCcHHHHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhc-CcccccCCCCCCCcHHHHHH
Confidence 38999999999999999988876667889999999988877755555656555555 43 22345679888999999999
Q ss_pred HHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435 84 SAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL 163 (407)
Q Consensus 84 ~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~ 163 (407)
+++++.+..+..+++++|++++|+|++++++++.+++..+.+||+|++++|+|.++...++..|.+++.++..+++++++
T Consensus 82 ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~ 161 (412)
T 1yaa_A 82 AAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSL 161 (412)
T ss_dssp HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEE
T ss_pred HHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCcc
Confidence 99999665554445688887779999999999866666677999999999999999999999999999999844456889
Q ss_pred ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435 164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG 243 (407)
Q Consensus 164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~ 243 (407)
|++++++.+.+.+.+.+++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++...+..++..+....+
T Consensus 162 d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (412)
T 1yaa_A 162 DLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLS 241 (412)
T ss_dssp CHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTT
T ss_pred CHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCC
Confidence 99999999974333455666699999999999999999999999999999999999999987531012234434433344
Q ss_pred ---cEEEEEecCccccccCCCcceeEEee----cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHH
Q 015435 244 ---ECLVAQSYAKNMGLYGERVGALSIVC----KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTL 316 (407)
Q Consensus 244 ---~~i~~~s~sK~~~~~G~r~G~~~~v~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (407)
++++++|+||.++++|+|+||+++++ ++++..+.+...+....+..+.+++.++|.++..++++..+.++|.+
T Consensus 242 ~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 321 (412)
T 1yaa_A 242 TVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHK 321 (412)
T ss_dssp TTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHH
Confidence 79999999999998899999992115 24553334566565544445557788999999999988766666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHH
Q 015435 317 ELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLT 396 (407)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~ 396 (407)
++++.+++++++++++.+.|++.+.+..+.+..+.+++|.|.+++.+.+..+++++||.+.+..||+++..+++++++++
T Consensus 322 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~Ris~~~~~~~~i~~~~ 401 (412)
T 1yaa_A 322 DMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVA 401 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCCHHHHHHHHHhCCEEeccCcEEEEccCCHhHHHHHH
Confidence 88999999999999999999987622125667788999999999888788888889999999779999866899999999
Q ss_pred HHHHHHHHhh
Q 015435 397 DAIHAAVTRM 406 (407)
Q Consensus 397 ~~l~~~l~~~ 406 (407)
++|+++++.+
T Consensus 402 ~~l~~~~~~~ 411 (412)
T 1yaa_A 402 KAIDEVVRFY 411 (412)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999998753
No 10
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=100.00 E-value=1.7e-48 Score=372.29 Aligned_cols=394 Identities=45% Similarity=0.790 Sum_probs=296.5
Q ss_pred ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435 6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA 85 (407)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a 85 (407)
+|.++...++++++.....+....++++|||+.|.+.++++.+.+++.+.+++.... .....++|.+..|..++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~-~~~~~~~y~~~~g~~~lr~~la 79 (396)
T 2q7w_A 1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLL-ENETTKNYLGIDGIPEFGRCTQ 79 (396)
T ss_dssp -CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHH-HHCCCCCCCCTTCCHHHHHHHH
T ss_pred CccccccCCCchHHHHHHHHhccCCCCceecccccccCCCCCccCcHHHHHHHHhhc-CcccccCCCCCCCCHHHHHHHH
Confidence 477888889999988887776655678999999997666663444444444444432 1224567988899999999999
Q ss_pred HHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcCh
Q 015435 86 KLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNF 165 (407)
Q Consensus 86 ~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~ 165 (407)
+++.+..+..+++++|+++.|+|++++++++++++..+.+||+|+++.|+|.++...++..|.+++.++...++++++|+
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 159 (396)
T 2q7w_A 80 ELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDF 159 (396)
T ss_dssp HHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECH
T ss_pred HHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCH
Confidence 99955443324467887545999999999997666556799999999999999999999999999999985335678999
Q ss_pred hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435 166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245 (407)
Q Consensus 166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (407)
+++++.+.+.+....++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++ .....++..+....+++
T Consensus 160 ~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~ 238 (396)
T 2q7w_A 160 DALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGL-EEDAEGLRAFAAMHKEL 238 (396)
T ss_dssp HHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCH-HHHTHHHHHHHHHCSCE
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCc-cchhHHHHHHHhcCCcE
Confidence 99999997432234445559999999999999999999999999999999999999998752 01223444444446789
Q ss_pred EEEEecCccccccCCCcceeEEee--cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435 246 LVAQSYAKNMGLYGERVGALSIVC--KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD 323 (407)
Q Consensus 246 i~~~s~sK~~~~~G~r~G~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (407)
++++|+||.++++|+|+||+ ++ ++++..+.+...+....+..+.+++.+++.++..++++..+.+.|.+++++.++
T Consensus 239 i~~~s~sK~~~~~G~riG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~ 316 (396)
T 2q7w_A 239 IVASSYSXNFGLYNERVGAC--TLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQ 316 (396)
T ss_dssp EEEEECTTTTTCGGGCCEEE--EEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-C
T ss_pred EEEEeccccccccccccceE--EEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence 99999999999999999999 44 466655566666655444445566889999999999886555566677888999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHHHH
Q 015435 324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~~l 403 (407)
+++++++++.+.|++.+.+..+.+..+.+++|.|++++.+.+..+++++||.+.++.||+++..+++++++++++|++++
T Consensus 317 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~Ris~~~~~~e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 317 RIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCCHHHHHHHHHhcCeeecCCceEEEeecCHHHHHHHHHHHHhcC
Confidence 99999999999999886321256667889999999998888888888899999998899998668899999999998763
No 11
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=100.00 E-value=2.1e-47 Score=364.56 Aligned_cols=390 Identities=36% Similarity=0.662 Sum_probs=309.4
Q ss_pred ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435 6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA 85 (407)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a 85 (407)
+|+++...+++++++..+.+.+..++++|||+.|.+.++++.+.+++.+.+++.... .....++|.+..|..++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~-~~~~~~~y~~~~g~~~lr~~la 79 (394)
T 2ay1_A 1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRML-ETETTKTYAGLSGEPEFQKAMG 79 (394)
T ss_dssp CGGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHH-HHCCCCCCCCSSCCHHHHHHHH
T ss_pred CCccCccCCCccHHHHHHHHHhCCCccccccccceeeCCCCCccCcHHHHHHHHHhc-CCcccCCCCCCCCcHHHHHHHH
Confidence 478888999999999988887766788999999998666653445555555554443 1224667988899999999999
Q ss_pred HHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcCh
Q 015435 86 KLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNF 165 (407)
Q Consensus 86 ~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~ 165 (407)
+++.+.. +++++|++++|+|++++++++++.+..+.+||+|+++.|+|.++...++..|.+++.++...++++++|+
T Consensus 80 ~~~~~~~---~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 156 (394)
T 2ay1_A 80 ELILGDG---LKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDF 156 (394)
T ss_dssp HHHHGGG---CCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECH
T ss_pred HHHhCCC---CCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCH
Confidence 9985431 2457887656999999999997665545599999999999999999999999999999985435678999
Q ss_pred hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435 166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245 (407)
Q Consensus 166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (407)
+++++.+.+.+....++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. .+..++..+....+++
T Consensus 157 ~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~ 235 (394)
T 2ay1_A 157 EGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLE-EDAAGTRLIASRIPEV 235 (394)
T ss_dssp HHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHH-HHHHHHHHHHHHCSSE
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcc-cchHHHHHHhhcCCCE
Confidence 999999984322345555599999999999999999999999999999999999999987520 0223444444445679
Q ss_pred EEEEecCccccccCCCcceeEEee--cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435 246 LVAQSYAKNMGLYGERVGALSIVC--KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD 323 (407)
Q Consensus 246 i~~~s~sK~~~~~G~r~G~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (407)
++++|+||.++++|+|+||+ ++ +++++.+.+...+....+..+.+++.+++.++..++++..+.+.|.++.++.++
T Consensus 236 i~~~s~sK~~~~~G~riG~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~ 313 (394)
T 2ay1_A 236 LIAASCSKNFGIYRERTGCL--LALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRS 313 (394)
T ss_dssp EEEEECTTTTTCGGGCEEEE--EEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred EEEEeccCCCcCcCCccceE--EEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 99999999999999999999 45 567766666665554444444566888999999999877555566678889999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCCCeEEecCCCCCChhHHHHHHHHH
Q 015435 324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAA 402 (407)
Q Consensus 324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ggRis~~~~~~e~i~~~~~~l~~~ 402 (407)
+++++++++.+.|++.+.+..+.+..+.+|+|.|++++.+.+.++++++||.+.++.||+++..+++++++++++|+++
T Consensus 314 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~gi~v~~~~Ris~~~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 314 GMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCCHHHHHHHHHhCCEEecCCCeEEeecCCHhhHHHHHHHHHHc
Confidence 9999999999999887522125666778899999999887788888889999999889999866899999999999875
No 12
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=100.00 E-value=4.3e-46 Score=358.23 Aligned_cols=385 Identities=21% Similarity=0.276 Sum_probs=298.9
Q ss_pred cccccCCCCCchhhhhHhhhhc----CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHH
Q 015435 7 FGKIVRAPEDPILGVTVAYNKD----TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNK 82 (407)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~ 82 (407)
.++....++++++.....+++. .+.++|||+.|.|.++++.+.+++.+.+++..+. .....+|.+..|.+++|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~--~~~~~~y~~~~g~~~lr~ 87 (418)
T 3rq1_A 10 KHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLS--DSEHVGYAPIAGIPDFLC 87 (418)
T ss_dssp TTTTTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCC--HHHHHSCCCTTCCHHHHH
T ss_pred hhcCCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhc--ccccCCCCCCCChHHHHH
Confidence 3455566777888887666522 2468999999998777765556666666665543 223567988899999999
Q ss_pred HHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC
Q 015435 83 LSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG 162 (407)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 162 (407)
++++++.+..+.. .+++|++ |+|+++++.+++ ...+.+||+|++++|+|.++...++..|.+++.+|+. +.+++
T Consensus 88 ~ia~~~~~~~~~~-~~~~i~~--t~g~~~al~~~~--~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~ 161 (418)
T 3rq1_A 88 AAEKECFGNFRPE-GHIRSIA--TAGGTGGIHHLI--HNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLF-DEHNN 161 (418)
T ss_dssp HHHHHHHGGGCCS-SEEEEEE--ESHHHHHHHHHH--HHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSB-CTTSS
T ss_pred HHHHHHhcccCcc-ccccEEE--CCchHHHHHHHH--HHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeee-CCCCC
Confidence 9999995543221 1238999 999999999995 4447899999999999999999999999999999985 33478
Q ss_pred cChhhHHHHHHcC--CCCcEEEEecCC-CCCCCCCCCHHHHHHHHHHHH------HcCceeeeccccccccCCCCCchhH
Q 015435 163 LNFQGLLEDLRAA--PSGAIVLLHACA-HNPTGVDPTLEQWEQIRQLMR------SKGLLPFFDSAYQGFASGSLDADAQ 233 (407)
Q Consensus 163 ~d~~~l~~~i~~~--~~~~~v~i~~~p-~NPtG~~~~~~~l~~i~~~~~------~~~~~li~D~~y~~~~~~~~~~~~~ 233 (407)
+|++++++.+.+. ++++.++++++| |||||.+++.+++++|+++|+ +||+++|+||+|.++.+.+. ...
T Consensus 162 ~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~--~~~ 239 (418)
T 3rq1_A 162 FNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKD--EVR 239 (418)
T ss_dssp BCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHH--HHH
T ss_pred cCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChH--HHH
Confidence 9999999998731 145545555889 999999999999999999999 89999999999999987531 111
Q ss_pred HHHH-HHHcCCc--EEEEEecCccccccCCCcceeEEee--cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435 234 SVRM-FVADGGE--CLVAQSYAKNMGLYGERVGALSIVC--KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS 308 (407)
Q Consensus 234 ~~~~-~~~~~~~--~i~~~s~sK~~~~~G~r~G~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (407)
++.. +....++ +++++||||.++++|+|+||+ ++ +++++.+.+...........+.+++.+++.++..++++.
T Consensus 240 ~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 317 (418)
T 3rq1_A 240 AFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAM--IGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADP 317 (418)
T ss_dssp GGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEE--EEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCH
T ss_pred HHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEE--EEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCH
Confidence 1111 1111234 588999999999999999999 45 367766665554333333334468889999999999988
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-CHHHHHHhHhhccEEEcCCC---eEEe
Q 015435 309 TMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-NSEQVAFMTKEYHIYMTSDG---RISM 384 (407)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~gg---Ris~ 384 (407)
...+.|.+..++++++++++++++.+.|++.| +.+..+.+++|.|+++ +.+.+.+.|.++||.+.||+ ||++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~iRis~ 393 (418)
T 3rq1_A 318 AKFKEYEAERNCYYQLIRDRADIFKQEAAQVG----LPMLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAA 393 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCCCCCCSSSEEEEECTTHHHHHHHHHHTTEECEECSSEEEEEG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCCCceEEEEcCCCCHHHHHHHHHhCCEEEecCCCCeEEEE
Confidence 76667777788889999999999999999887 7778889999999866 55555567788999999986 9998
Q ss_pred cCCCCCChhHHHHHHHHHHHhhC
Q 015435 385 AGLSSKTVPHLTDAIHAAVTRMG 407 (407)
Q Consensus 385 ~~~~~e~i~~~~~~l~~~l~~~~ 407 (407)
+.++++++++++++|++++++++
T Consensus 394 ~~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 394 CGIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp GGSCHHHHTTHHHHHHHHHHHTT
T ss_pred ecCCHHHHHHHHHHHHHHHHHHh
Confidence 86689999999999999998764
No 13
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=100.00 E-value=7.9e-46 Score=352.50 Aligned_cols=365 Identities=15% Similarity=0.149 Sum_probs=282.0
Q ss_pred ccccccCCCCCchhhhhHhhhh--cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435 6 VFGKIVRAPEDPILGVTVAYNK--DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL 83 (407)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ 83 (407)
+.+++...+++++..+.+.+.+ ..++++|+|+.|.+ +. +.++.+.+++.+.+. . ...+|.+..|.+++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~-~~~~y~~~~g~~~lr~~ 76 (385)
T 1b5p_A 4 LSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEP---DF-DTPEHVKEAARRALA--Q-GKTKYAPPAGIPELREA 76 (385)
T ss_dssp CCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSC---SS-CCCHHHHHHHHHHHH--T-TCCSCCCTTCCHHHHHH
T ss_pred hhhHHhhcCcchHHHHHHHHHHHHhcCCCEEEecCCCC---CC-CCCHHHHHHHHHHHh--c-CCCCCCCCCCCHHHHHH
Confidence 4566777777777766655442 23578999999975 33 445556666666654 2 24568888899999999
Q ss_pred HHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435 84 SAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL 163 (407)
Q Consensus 84 ~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~ 163 (407)
+++++...++..+++++|++ |+|+++++.+++ ...+.+||+|++++|+|..+...++..|.+++.++++.++++.+
T Consensus 77 ia~~~~~~~g~~~~~~~i~~--t~g~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 152 (385)
T 1b5p_A 77 LAEKFRRENGLSVTPEETIV--TVGGSQALFNLF--QAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVP 152 (385)
T ss_dssp HHHHHHHTTCCCCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC
T ss_pred HHHHHHHHhCCCCChHHEEE--cCChHHHHHHHH--HHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCC
Confidence 99999665565567789999 999999999995 33478999999999999999999999999999999953246789
Q ss_pred ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435 164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG 243 (407)
Q Consensus 164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~ 243 (407)
|++++++++. ++++++++ ++||||||.+++.+++++|+++|++||++||+||+|..+.+++ . ..++..+ .. +
T Consensus 153 d~~~l~~~l~--~~~~~v~~-~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~--~~~~~~~-~~-~ 224 (385)
T 1b5p_A 153 DPERVRRAIT--PRTKALVV-NSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-E--HFSPGRV-AP-E 224 (385)
T ss_dssp CHHHHHTTCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-C--CCCGGGT-CT-T
T ss_pred CHHHHHHhcC--CCCEEEEE-eCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-C--CCCHHHc-CC-C
Confidence 9999999886 45566665 8999999999999999999999999999999999999988754 1 1122222 12 6
Q ss_pred cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD 323 (407)
Q Consensus 244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (407)
++++++||||.++++|+|+||+ +++ ++ +.+.+.......+.+++.+.|.++..+++.... ..+++++.++
T Consensus 225 ~~i~~~s~SK~~~~~G~RiG~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~ 294 (385)
T 1b5p_A 225 HTLTVNGAAKAFAMTGWRIGYA--CGP-KE----VIKAMASVSRQSTTSPDTIAQWATLEALTNQEA---SRAFVEMARE 294 (385)
T ss_dssp TEEEEEESTTTTTCGGGCCEEE--ECC-HH----HHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHH---HHHHHHHHHH
T ss_pred CEEEEEechhhcCCcccceEEE--EeC-HH----HHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCc---chHHHHHHHH
Confidence 7999999999999999999999 565 44 444455444445567888999998888875100 0145778889
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-----CHHHHHHhHhhccEEEcCC------C--eEEecCCCCC
Q 015435 324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-----NSEQVAFMTKEYHIYMTSD------G--RISMAGLSSK 390 (407)
Q Consensus 324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~g------g--Ris~~~~~~e 390 (407)
+++++++++.+.|++.+ +.+..+.+++|.|+.+ +.+.+.+.|.++||.+.|| + ||+++. +++
T Consensus 295 ~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~~-~~~ 369 (385)
T 1b5p_A 295 AYRRRRDLLLEGLTALG----LKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYAT-SEE 369 (385)
T ss_dssp HHHHHHHHHHHHHHHHT----CCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCS-CHH
T ss_pred HHHHHHHHHHHHHHHCC----CeecCCCeeEEEEEecCCCCCCHHHHHHHHHHCCeEEecccccCCCCeEEEEecC-CHH
Confidence 99999999999999886 6777888998888754 4554444444789999886 2 999984 888
Q ss_pred ChhHHHHHHHHHHH
Q 015435 391 TVPHLTDAIHAAVT 404 (407)
Q Consensus 391 ~i~~~~~~l~~~l~ 404 (407)
++++++++|+++++
T Consensus 370 ~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 370 NLRKALERFARVLG 383 (385)
T ss_dssp HHHHHHHHGGGGC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988765
No 14
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=100.00 E-value=2.4e-45 Score=352.50 Aligned_cols=381 Identities=19% Similarity=0.265 Sum_probs=292.5
Q ss_pred ccccccCCCCCchhhhhHhhhhc----CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHH
Q 015435 6 VFGKIVRAPEDPILGVTVAYNKD----TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFN 81 (407)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~ 81 (407)
+.++.....+++++.+...+++. .+.++|||+.|.|.++.+.+.+++.+.+++.++. ....++|.+..|.+++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~--~~~~~~Y~~~~g~~~lr 85 (413)
T 3t18_A 8 IKRATWNNGPDLAFDINNKANAAIEKYGREAVINAALGTLLDDKGKIIALPSVYDRLDEMD--RSHIASYAPIEGEKDYR 85 (413)
T ss_dssp CTTTCCCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSC--HHHHHSCCCTTCCHHHH
T ss_pred hhhcccCCCCChHHHHHHHHhhhhhhccccceEeccccCccCCCCCcCChHHHHHHHHhcC--cccccCcCCCCCCHHHH
Confidence 46677777888888887766522 2468999999998777664556666666666653 22456798889999999
Q ss_pred HHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCC
Q 015435 82 KLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATR 161 (407)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~ 161 (407)
+++++++.+..+.. ++++|++ |+|+++++.+++ ...+.+||+|++++|+|..+...++..|.+++.+|+.+ .++
T Consensus 86 ~~la~~~~~~~~~~-~~~~i~~--t~g~~~al~~~~--~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~ 159 (413)
T 3t18_A 86 KIVIDTLFGPYKPE-GYISAIA--TPGGTGAIRSAI--FSYLDEGDPLICHDYYWAPYRKICEEFGRNFKTFEFFT-DDF 159 (413)
T ss_dssp HHHHHHHHGGGCCS-SEEEEEE--ESHHHHHHHHHH--HHHCCSSCEEEEESSCCTHHHHHHHHHTCEEEEECCBC-TTS
T ss_pred HHHHHHHhcccCcc-ccCcEEE--cCccHHHHHHHH--HHhcCCCCEEEECCCCcccHHHHHHHhCCeEEEeeccC-CCC
Confidence 99999986643321 2349999 999999999995 44478999999999999999999999999999999853 347
Q ss_pred CcChhhHHHHHHcC--CCCcEEEEecCC-CCCCCCCCCHHHHHHHHHHHH------HcCceeeeccccccccCCCCCchh
Q 015435 162 GLNFQGLLEDLRAA--PSGAIVLLHACA-HNPTGVDPTLEQWEQIRQLMR------SKGLLPFFDSAYQGFASGSLDADA 232 (407)
Q Consensus 162 ~~d~~~l~~~i~~~--~~~~~v~i~~~p-~NPtG~~~~~~~l~~i~~~~~------~~~~~li~D~~y~~~~~~~~~~~~ 232 (407)
++|++++++.+.+. ++++.++++++| |||||.+++.+++++|+++|+ +||++||+||+|.++.+.+.. .
T Consensus 160 ~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~--~ 237 (413)
T 3t18_A 160 AFNIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQ--Q 237 (413)
T ss_dssp SBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSST--T
T ss_pred CcCHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhh--H
Confidence 89999999998731 145645555889 999999999999999999999 899999999999999986531 1
Q ss_pred HHH-HHHHHcCCc--EEEEEecCccccccCCCcceeEEeec--ChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC
Q 015435 233 QSV-RMFVADGGE--CLVAQSYAKNMGLYGERVGALSIVCK--TEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD 307 (407)
Q Consensus 233 ~~~-~~~~~~~~~--~i~~~s~sK~~~~~G~r~G~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
.++ ..+....++ +++++||||.++++|+|+||+ ++. ++++.+.+...........+.+++.+++.++..++++
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~riG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 315 (413)
T 3t18_A 238 RKFFEKFSNLPRNLFVVVAFSMSKSHTAYGLRSGAA--VGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERA 315 (413)
T ss_dssp TGGGGGGTTCCTTEEEEEEEEHHHHTTCGGGCCEEE--EEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSH
T ss_pred HHHHHHHhhcCCCeeEEEEEecCccCCCcCcCcEEE--EEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcC
Confidence 121 111122334 488999999999999999999 452 6666666555333322223346888899999888887
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-CHHHHHHhHhhccEEEcCCC---eEE
Q 015435 308 STMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-NSEQVAFMTKEYHIYMTSDG---RIS 383 (407)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~gg---Ris 383 (407)
..+.+ |.+..++++++++++++++.+.|++.| +.+..+.+++|.|+++ +.+.+.+.|.++||.+.||+ ||+
T Consensus 316 ~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~g~~~iRis 390 (413)
T 3t18_A 316 ENKKI-YEQELVDLRNMLKSRADVFVTAAKENK----LTMIPYFGGFFTFIPTDKAFDIVKDLEKENIFTIPSAKGIRVA 390 (413)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTT----CCCBCCCSSSCEEEECSCHHHHHHHHHHTTEECEECSSEEEEC
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC----CCccCCCceEEEEeCCCCHHHHHHHHHhCCEEEecCCCceEEE
Confidence 65433 666778889999999999999999887 7778889999999865 55555566778999999986 999
Q ss_pred ecCCCCCChhHHHHHHHHHHHhh
Q 015435 384 MAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 384 ~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
++..+++++ +++|.++++++
T Consensus 391 ~~~~~~~~~---l~~l~~~l~~~ 410 (413)
T 3t18_A 391 ICGVGEEKI---PKLVQRLAFYT 410 (413)
T ss_dssp TTTSCGGGH---HHHHHHHHHHH
T ss_pred EeeCCHHHH---HHHHHHHHHHH
Confidence 886566666 88888887653
No 15
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=8.8e-45 Score=349.88 Aligned_cols=375 Identities=13% Similarity=0.143 Sum_probs=278.0
Q ss_pred ccccccCCCCCchhhhhHhhhhcC--CCCeeeeeeeeeecCCC-ccccchhHHHHHHHHhccccccccCCCCCCcHHHHH
Q 015435 6 VFGKIVRAPEDPILGVTVAYNKDT--SPVKLNLGVGAYRTEEG-KPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNK 82 (407)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~ 82 (407)
+|..+...+.++|+++...++... ++++|||+.|.+. +.| .+.++.+.+++.+.+. .....+|.+..|..++|+
T Consensus 27 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~l~~g~~~-~~g~~~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~lr~ 103 (427)
T 3dyd_A 27 RPSDMAKKTFNPIRAIVDNMKVKPNPNKTMISLSIGDPT-VFGNLPTDPEVTQAMKDALD--SGKYNGYAPSIGFLSSRE 103 (427)
T ss_dssp CCCC----------------CCCCCTTSCCEECCCSCTT-TTSSSCCCHHHHHHHHHHHH--HCCSSSCCCTTCCHHHHH
T ss_pred chhhHhhcccchHHHHHHHHhhcccCCCCEEeCCCcCCC-ccCCCCCCHHHHHHHHHHHh--cCcCCCCCCCCCcHHHHH
Confidence 467777788888999888777433 4678999999862 222 2445555555555554 333567988899999999
Q ss_pred HHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC
Q 015435 83 LSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG 162 (407)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 162 (407)
++++++.+. +..+++++|++ |+|+++++.+++..+ +.+||+|+++.|+|.++...++..|.+++.+++.++.++.
T Consensus 104 ~la~~~~~~-~~~~~~~~v~~--t~g~t~al~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 178 (427)
T 3dyd_A 104 EIASYYHCP-EAPLEAKDVIL--TSGCSQAIDLCLAVL--ANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWE 178 (427)
T ss_dssp HHHHHHCBT-TBCCCGGGEEE--ESSHHHHHHHHHHHH--CCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTE
T ss_pred HHHHHHhhc-CCCCChHHEEE--ecCcHHHHHHHHHHh--cCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCC
Confidence 999999543 55566789999 999999999996444 6799999999999999999999999999999996556678
Q ss_pred cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435 163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG 242 (407)
Q Consensus 163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~ 242 (407)
+|++++++.+. ++++++++ ++|+||||.+++.+++++|+++|++||+++|+|++|+++.+++.. ..++..+ ...
T Consensus 179 ~d~~~l~~~l~--~~~~~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~--~~~~~~~-~~~ 252 (427)
T 3dyd_A 179 IDLKQLEYLID--EKTACLIV-NNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCK--YEPLATL-STD 252 (427)
T ss_dssp ECHHHHHSSCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCC--CCCGGGG-CSS
T ss_pred CCHHHHHHHhc--cCCCEEEE-ECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCc--CccHHHh-CCC
Confidence 99999999886 45566665 899999999999999999999999999999999999999876521 1122212 224
Q ss_pred CcEEEEEecCccccccCCCcceeEEeecCh--hhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHH
Q 015435 243 GECLVAQSYAKNMGLYGERVGALSIVCKTE--DVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKA 320 (407)
Q Consensus 243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 320 (407)
..+++++|+||.|+++|+|+||+ +++++ .+.+.+.+.+...... .++++.++|.++..+++... .+++++
T Consensus 253 ~~vi~~~S~sK~~~~~G~riG~~--~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~~-----~~~~~~ 324 (427)
T 3dyd_A 253 VPILSCGGLAKRWLVPGWRLGWI--LIHDRRDIFGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRTP-----GEFYHN 324 (427)
T ss_dssp CCEEEEEESTTTSSCGGGCCEEE--EEECSTTSSHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSC-----HHHHHH
T ss_pred CcEEEEeeccccCCCcCcceEEE--EecCcchhhHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcC-----HHHHHH
Confidence 56899999999999999999999 56653 1112344444433322 45888999999998887421 145778
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC----------HHHHHHhHhhccEEEcCCC--------eE
Q 015435 321 MADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN----------SEQVAFMTKEYHIYMTSDG--------RI 382 (407)
Q Consensus 321 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~gi~~~~gg--------Ri 382 (407)
.+++++++++++.+.|++.+. +.+..|.+++|.|++++ .+++.++++++||.+.||. ||
T Consensus 325 ~~~~~~~~~~~l~~~L~~~~g---~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRi 401 (427)
T 3dyd_A 325 TLSFLKSNADLCYGALAAIPG---LRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRV 401 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT---EEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCC---ceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEE
Confidence 889999999999999998732 77778889999887443 3456677778999999873 99
Q ss_pred EecCCCCCChhHHHHHHHHHHHhh
Q 015435 383 SMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 383 s~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
+++. +++++++++++|+++++++
T Consensus 402 s~~~-~~e~i~~~l~~l~~~l~~~ 424 (427)
T 3dyd_A 402 VITV-PEVMMLEACSRIQEFCEQH 424 (427)
T ss_dssp ESCS-CHHHHHHHHHHHHHHHHHH
T ss_pred EECC-CHHHHHHHHHHHHHHHHHh
Confidence 9984 8899999999999998764
No 16
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=100.00 E-value=2.2e-44 Score=346.70 Aligned_cols=377 Identities=15% Similarity=0.150 Sum_probs=290.4
Q ss_pred CCcccccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHH
Q 015435 1 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDF 80 (407)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l 80 (407)
|.+..+..++...+++.+........ ++++|||+.|.+ +. +.++.+.+++.+.+. ......+|++..|..++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~l~~g~~---~~-~~~~~v~~a~~~~~~-~~~~~~~y~~~~g~~~l 72 (422)
T 3fvs_A 1 MAKQLQARRLDGIDYNPWVEFVKLAS---EHDVVNLGQGFP---DF-PPPDFAVEAFQHAVS-GDFMLNQYTKTFGYPPL 72 (422)
T ss_dssp ---CCSCGGGTTCCCCHHHHHHHHHH---TSCCEECCCSSC---SS-CCCHHHHHHHHHHHH-SCGGGGSCCCTTCCHHH
T ss_pred CcchhHHHHhhccCccHHHHHHHHhh---cCCceEeCCCCC---CC-CCCHHHHHHHHHHHh-CCCccCCCCCCCCCHHH
Confidence 44445678888888887777765443 368999999985 33 556666666666665 22124679888899999
Q ss_pred HHHHHHHHhCCCCCCCCC-CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec--
Q 015435 81 NKLSAKLILGADSPAIKD-NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD-- 157 (407)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~-~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~-- 157 (407)
|+++++++....+..+++ ++|++ |+|+++++.+++.. .+.+||+|+++.|+|.++...++..|.+++.+++..
T Consensus 73 r~~la~~~~~~~g~~~~~~~~i~~--~~g~~~a~~~~~~~--~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~ 148 (422)
T 3fvs_A 73 TKILASFFGELLGQEIDPLRNVLV--TVGGYGALFTAFQA--LVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGP 148 (422)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCC
T ss_pred HHHHHHHHHHhhCCCCCCCCcEEE--ECChHHHHHHHHHH--HcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEeccccc
Confidence 999999995544555556 68999 99999999999543 378999999999999999999999999999999853
Q ss_pred --------CCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435 158 --------PATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD 229 (407)
Q Consensus 158 --------~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~ 229 (407)
..++.+|++++++.+. ++++++++ ++||||||.+++.+++++|+++|++||+++|+||+|.++.+++..
T Consensus 149 ~~~G~~~~~~~~~~d~~~l~~~~~--~~~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~ 225 (422)
T 3fvs_A 149 IQNGELGSSSNWQLDPMELAGKFT--SRTKALVL-NTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQ 225 (422)
T ss_dssp CCSSSCCBGGGSBCCHHHHHTTCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC
T ss_pred ccccccccccCCCCCHHHHHhhcC--CCceEEEE-CCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCC
Confidence 1235689999999886 55666666 899999999999999999999999999999999999999886531
Q ss_pred chhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChh
Q 015435 230 ADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDST 309 (407)
Q Consensus 230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (407)
..++..+....++++++.|+||.+|++|+|+||+ +++ +.+.+.+........++++.+.+.++..++++..
T Consensus 226 --~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 296 (422)
T 3fvs_A 226 --HISIASLPGMWERTLTIGSAGKTFSATGWKVGWV--LGP-----DHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQ 296 (422)
T ss_dssp --CCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEE--ECC-----HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred --CCChhhcccccCcEEEEecchhccCCccceEEEE--EeC-----HHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhcc
Confidence 1222222223467899999999999999999999 565 4455555555554556788899998888886411
Q ss_pred hH-HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCH------------------HHHHHhHh
Q 015435 310 MY-KEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNS------------------EQVAFMTK 370 (407)
Q Consensus 310 ~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~l~ 370 (407)
.. ..+.+++++.+++++++++++.+.|++.+ +.+..+.+++|.|+.+.. +++..+++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 372 (422)
T 3fvs_A 297 LLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVG----LKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIK 372 (422)
T ss_dssp HTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTT----CEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHcC----CeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHH
Confidence 00 01124577888999999999999999887 777788899999986532 45667788
Q ss_pred hccEEEcCC-------------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435 371 EYHIYMTSD-------------G--RISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 371 ~~gi~~~~g-------------g--Ris~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
++||.+.|| + ||+++. +++++++++++|+++++++
T Consensus 373 ~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~l 422 (422)
T 3fvs_A 373 NKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLRKWKVEL 422 (422)
T ss_dssp HHCEECEEGGGGSCHHHHTTSCSEEEEECCC-CHHHHHHHHHHHHHHHHCC
T ss_pred hcCEEEeCcHHhcCCcCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHhhC
Confidence 899999873 2 999997 9999999999999998763
No 17
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-44 Score=345.17 Aligned_cols=342 Identities=14% Similarity=0.138 Sum_probs=267.6
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
.+.++|||+.|.+ +. +.|+.+.+++.+.+. . ....+|++..|..++|+++++++....+..+++++|++ |+|
T Consensus 55 ~~~~~i~l~~g~~---~~-~~~~~v~~a~~~~~~-~-~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~--t~G 126 (447)
T 3b46_A 55 QGRELINLGQGFF---SY-SPPQFAIKEAQKALD-I-PMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTV--TTG 126 (447)
T ss_dssp TTSCCEECCCCSC---SS-CCCHHHHHHHHHHTT-S-GGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEE--ESH
T ss_pred cCCCeEEccCCCC---CC-CCCHHHHHHHHHHHh-C-cCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEE--eCC
Confidence 4578999999985 33 445566666666654 2 13567988889999999999999555555566789999 999
Q ss_pred cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCC----------CCCcChhhHHHHHHcCCCC
Q 015435 109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPA----------TRGLNFQGLLEDLRAAPSG 178 (407)
Q Consensus 109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~----------~~~~d~~~l~~~i~~~~~~ 178 (407)
+++++.++++ ..+.+||+|++++|+|..+...++..|.+++.+++..+. ++.+|++++++.+. +++
T Consensus 127 ~~~al~~~~~--~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--~~~ 202 (447)
T 3b46_A 127 ANEGILSCLM--GLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT--SKT 202 (447)
T ss_dssp HHHHHHHHHH--HHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC--TTE
T ss_pred HHHHHHHHHH--HHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc--cCC
Confidence 9999999953 347899999999999999999999999999999985331 46799999999886 556
Q ss_pred cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHH-HHcCCcEEEEEecCccccc
Q 015435 179 AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF-VADGGECLVAQSYAKNMGL 257 (407)
Q Consensus 179 ~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~~~ 257 (407)
+++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.. .++..+ ....++++++.|+||.+++
T Consensus 203 ~~v~l-~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~---~~~~~~~~~~~~~~i~i~S~sK~~~~ 278 (447)
T 3b46_A 203 KAVII-NTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSF---TRIATLSPEIGQLTLTVGSAGKSFAA 278 (447)
T ss_dssp EEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC---CCGGGSCHHHHTTEEEEEEHHHHTTC
T ss_pred eEEEE-eCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCC---cCHHHcCCCCCCcEEEEecCchhcCC
Confidence 77666 799999999999999999999999999999999999999886411 111111 1224679999999999999
Q ss_pred cCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015435 258 YGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALS 337 (407)
Q Consensus 258 ~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 337 (407)
+|+|+||+ ++.++++.+ .+........++++.+.|.++..+|+... +.+++++.+++++++++++.+.|+
T Consensus 279 ~G~riG~~--~~~~~~l~~----~l~~~~~~~~~~~~~~~~~a~~~aL~~~~----~~~~~~~~~~~~~~~~~~l~~~L~ 348 (447)
T 3b46_A 279 TGWRIGWV--LSLNAELLS----YAAKAHTRICFASPSPLQEACANSINDAL----KIGYFEKMRQEYINKFKIFTSIFD 348 (447)
T ss_dssp TTSCCEEE--ECSCHHHHH----HHHHHHHHHTSSCCHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhEEE--EeCCHHHHH----HHHHHHhhccCCCChHHHHHHHHHHhCCc----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 563555444 44444334455788888988888887531 124577888999999999999999
Q ss_pred hcCCCCCcccccCCceeEEecCCC-------------------H-HHHHHhHhhccEEEcCC-------------C--eE
Q 015435 338 ARGTPGDWSHIIKQIGMFTFTGLN-------------------S-EQVAFMTKEYHIYMTSD-------------G--RI 382 (407)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~~~l~~~gi~~~~g-------------g--Ri 382 (407)
+.| +.+..+.+|+|.|+.+. . +++.++++++||.+.|| + ||
T Consensus 349 ~~g----~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRl 424 (447)
T 3b46_A 349 ELG----LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRF 424 (447)
T ss_dssp HHT----CCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEE
T ss_pred HCC----CeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEE
Confidence 887 67777889999987542 2 33456667789999874 2 99
Q ss_pred EecCCCCCChhHHHHHHHH
Q 015435 383 SMAGLSSKTVPHLTDAIHA 401 (407)
Q Consensus 383 s~~~~~~e~i~~~~~~l~~ 401 (407)
+++. +++++++++++|++
T Consensus 425 s~~~-~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 425 AVCK-DDAYLENAVERLKL 442 (447)
T ss_dssp ECCS-CHHHHHHHHHHGGG
T ss_pred EEeC-CHHHHHHHHHHHHH
Confidence 9986 88999999999976
No 18
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=100.00 E-value=6.2e-42 Score=335.80 Aligned_cols=342 Identities=15% Similarity=0.187 Sum_probs=269.4
Q ss_pred ccchhHHHHHHHHhcccc-ccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh-cCC
Q 015435 49 LVLNVVRKAEQLLVNDQS-RVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH-YHQ 126 (407)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~-~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~-~~g 126 (407)
.|.++++++.+.+..... ....|.+..|..++|+++++++....+..+++++|++ |+|+++++.+++.. .+ .+|
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~~--l~~~~g 182 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFL--TDGASPGVHLMMQL--LIRNEK 182 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEE--ESSSHHHHHHHHHH--HCCSTT
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEE--cCCHHHHHHHHHHH--HcCCCC
Confidence 456677777777752212 5678999999999999999999554455566799999 99999999999533 35 699
Q ss_pred CeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC----CCCcEEEEecCCCCCCCCCCCHHHHHH
Q 015435 127 LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA----PSGAIVLLHACAHNPTGVDPTLEQWEQ 202 (407)
Q Consensus 127 d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~----~~~~~v~i~~~p~NPtG~~~~~~~l~~ 202 (407)
|+|+++.|+|..+...++..|.+++.++++++.++.+|++++++++.+. .+++++++ ++||||||.+++.+++++
T Consensus 183 d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl-~~p~NPtG~~~s~~~l~~ 261 (500)
T 3tcm_A 183 DGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVV-INPGNPTGQVLAEENQYD 261 (500)
T ss_dssp EEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEE-ESSCTTTCCCCCHHHHHH
T ss_pred CEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEE-ECCCCCCcccCCHHHHHH
Confidence 9999999999999999999999999999965556799999999999741 13556666 799999999999999999
Q ss_pred HHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH-H-----cCCcEEEEEecCccc-cccCCCcceeEEeecChhhH
Q 015435 203 IRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV-A-----DGGECLVAQSYAKNM-GLYGERVGALSIVCKTEDVA 275 (407)
Q Consensus 203 i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~-~-----~~~~~i~~~s~sK~~-~~~G~r~G~~~~v~~~~~~~ 275 (407)
|+++|++||+++|+||+|+.+.+++. ....++..+. . ...++++++||||.| |++|+|+||+.....++++.
T Consensus 262 i~~la~~~~~~li~Deay~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 340 (500)
T 3tcm_A 262 IVKFCKNEGLVLLADEVYQENIYVDN-KKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVR 340 (500)
T ss_dssp HHHHHHHHTCEEEEECTTTTCBCCTT-CCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHH
T ss_pred HHHHHHHcCCEEEEecCccccccCCC-CCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHH
Confidence 99999999999999999999888532 1222332221 1 123579999999999 89999999994222366666
Q ss_pred HHHHHHHhhhhhcccCCCChhHHHHHHHHhcC----hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC
Q 015435 276 SRVESQLKLVIRPMYSSPPIHGASIVATILKD----STMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ 351 (407)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 351 (407)
+.+.. .. ....+++.++|.++..++.. ...++.|.+..++++++++++++++.+.|++.+. +.+..++
T Consensus 341 ~~l~~----~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g---~~~~~~~ 412 (500)
T 3tcm_A 341 EQIYK----IA-SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEG---ITCNEAE 412 (500)
T ss_dssp HHHHH----HH-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT---EECCCCC
T ss_pred HHHHH----HH-hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cEEecCC
Confidence 65544 22 23458889999999988874 2355567778889999999999999999998832 8888999
Q ss_pred ceeEEecC--CCH-------------H--HHHHhHhhccEEEcCC-------C----eEEecCCCCCChhHHHHHHHHHH
Q 015435 352 IGMFTFTG--LNS-------------E--QVAFMTKEYHIYMTSD-------G----RISMAGLSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 352 ~~~~~~~~--~~~-------------~--~~~~~l~~~gi~~~~g-------g----Ris~~~~~~e~i~~~~~~l~~~l 403 (407)
+++|.|++ +.. + .+.++|+++||.+.|| | ||+++ .+++++++++++|++++
T Consensus 413 g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~i~~l~~~~ 491 (500)
T 3tcm_A 413 GAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL-PQEDKIPAVISRFTVFH 491 (500)
T ss_dssp BTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC-SCTTTHHHHHHHHHHHH
T ss_pred eEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHH
Confidence 99999953 322 1 2457888899999975 2 99999 59999999999999988
Q ss_pred Hh
Q 015435 404 TR 405 (407)
Q Consensus 404 ~~ 405 (407)
++
T Consensus 492 ~~ 493 (500)
T 3tcm_A 492 EA 493 (500)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 19
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=5.6e-43 Score=338.87 Aligned_cols=366 Identities=11% Similarity=0.148 Sum_probs=275.3
Q ss_pred ccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccc-hhHHHHHHHHhccccccccCCCCCCcHHHHHHHHH
Q 015435 8 GKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVL-NVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAK 86 (407)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~ 86 (407)
.|.....++++........ ++++|||+.|.| +....|. .+.+++.+.+........+|++..|..++|+++++
T Consensus 56 ~~~~~~~~s~~~~~~~~~~---~~~~i~l~~g~p---~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~ 129 (448)
T 3aow_A 56 KKALEMRASEVRELLKLVE---TSDIISLAGGLP---NPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMK 129 (448)
T ss_dssp HHHHHCCCCHHHHHHHHHH---TSSSEECCCCCC---CGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHhcc---CCCcEeCCCCCC---CchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHH
Confidence 4444555566655554332 367999999986 2212244 44444445544111124679888899999999999
Q ss_pred HHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChh
Q 015435 87 LILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQ 166 (407)
Q Consensus 87 ~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~ 166 (407)
++....+.. ++++|++ |+|+++++.++++.+ +.+||+|+++.|+|.++...++..|.+++.+|++ + .++|++
T Consensus 130 ~~~~~~g~~-~~~~v~~--t~G~~~al~~~~~~l--~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~--~g~d~~ 201 (448)
T 3aow_A 130 WLGKRYGIS-QDNDIMI--TSGSQQALDLIGRVF--LNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLD-D--EGMKVE 201 (448)
T ss_dssp HHHHHHCCC-TTSEEEE--ESSHHHHHHHHHHHH--CCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEE-T--TEECHH
T ss_pred HHHHhcCcC-ChhhEEE--eCcHHHHHHHHHHHH--cCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccC-C--CCCCHH
Confidence 984333333 5689999 999999999995444 7899999999999999999999999999999984 3 359999
Q ss_pred hHHHHHH----cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435 167 GLLEDLR----AAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG 242 (407)
Q Consensus 167 ~l~~~i~----~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~ 242 (407)
++++.+. +.+++++++++++|+||||.+++.+++++|+++|++||++||+||+|..+.+++.. ..++..+ +..
T Consensus 202 ~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~--~~~~~~~-~~~ 278 (448)
T 3aow_A 202 ILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNP--EKKIKAL-DNE 278 (448)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCC--CCCTGGG-CTT
T ss_pred HHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCC--CcCHHhc-CCC
Confidence 9999987 42355676667999999999999999999999999999999999999999875421 1122122 224
Q ss_pred CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435 243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA 322 (407)
Q Consensus 243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 322 (407)
++++++.||||.++ +|+|+||+ +++ ++ +.+.+.........+++.++|.++..+|++. .|.+++++.+
T Consensus 279 ~~vi~~~S~SK~~~-~GlriG~v--~~~-~~----l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~----~~~~~~~~~~ 346 (448)
T 3aow_A 279 GRVIYLGTFSKILA-PGFRIGWM--VGD-PG----IIRKMEIAKQSTDLCTNVFGQVVAWRYVDGG----YLEKHIPEIR 346 (448)
T ss_dssp SCEEEEEESTTTTC-GGGCCEEE--EEC-HH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHHTT----HHHHHHHHHH
T ss_pred CCEEEEccchhhcc-ccccEEEE--EeC-HH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC----CHHHHHHHHH
Confidence 57899999999999 99999999 566 44 4444444444444577899999999988764 2346788889
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCCcccccCCceeEEecCC----CHHHH-HHhHhhccEEEcCC----------C--eEEe
Q 015435 323 DRIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFTFTGL----NSEQV-AFMTKEYHIYMTSD----------G--RISM 384 (407)
Q Consensus 323 ~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~l~~~gi~~~~g----------g--Ris~ 384 (407)
++++++++++.+.|++. +. .+.+..|.+|+|.|+.+ +.+.+ ..+++ +||.+.|| + ||++
T Consensus 347 ~~~~~~~~~l~~~L~~~~~~--g~~~~~p~~g~~~~v~~~~~~~~~~l~~~l~~-~gV~v~pg~~f~~~~~~~~~iRls~ 423 (448)
T 3aow_A 347 KFYKPRRDAMLEALEEFMPE--GVKWTKPEGGMFIWVTLPDGIDSKKMLERAIK-KGVAYVPGEAFYAHRDVKNTMRLNF 423 (448)
T ss_dssp HHHHHHHHHHHHHHHHHCCT--TCEECCCSBSSEEEEECSTTCCHHHHHHHHHH-TTEECEEGGGGSTTCCCCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCC--CeEEeCCCccEEEEEEcCCCCCHHHHHHHHHH-CCcEEEcchhhcCCCCCCCEEEEEe
Confidence 99999999999999874 20 16777788899999855 44444 45555 59999874 1 9999
Q ss_pred cCCCCCChhHHHHHHHHHHHh
Q 015435 385 AGLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 385 ~~~~~e~i~~~~~~l~~~l~~ 405 (407)
+..+++++++++++|++++++
T Consensus 424 ~~~~~e~i~~~~~~L~~~l~~ 444 (448)
T 3aow_A 424 TYVDEDKIMEGIKRLAETIKE 444 (448)
T ss_dssp SSSCTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 865789999999999999875
No 20
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=1.1e-42 Score=331.43 Aligned_cols=357 Identities=17% Similarity=0.164 Sum_probs=273.9
Q ss_pred cccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHH
Q 015435 9 KIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAK 86 (407)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~ 86 (407)
++...+++++..+.+.+. ..+++++|||+.|.+ .. +.++.+.+++.+.+. .....|.+..|..++|+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~---~~-~~~~~v~~a~~~~~~---~~~~~y~~~~g~~~lr~~ia~ 79 (391)
T 3h14_A 7 SRSAVDPFIVMDVMEAARRAEEAGRRIIHMEVGQP---GT-GAPRGAVEALAKSLE---TDALGYTVALGLPALRQRIAR 79 (391)
T ss_dssp STTCCCCCTTHHHHHHHHHHHHTTCCCEECCCSSC---SS-CSCHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred hHhhcCcchHHHHHHHHHHHHhcCCCeEEccCCCC---CC-CCCHHHHHHHHHHHh---cCCCCCCCCCChHHHHHHHHH
Confidence 788888777777665544 245689999999985 22 445556666666664 234678888899999999999
Q ss_pred HHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChh
Q 015435 87 LILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQ 166 (407)
Q Consensus 87 ~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~ 166 (407)
++...++..+++++|++ |+|+++++.+++ ...+.+||+|+++.|+|..+...++..|.+++.++++.+.++.+|++
T Consensus 80 ~~~~~~g~~~~~~~v~~--t~g~~~al~~~~--~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~ 155 (391)
T 3h14_A 80 LYGEWYGVDLDPGRVVI--TPGSSGGFLLAF--TALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPA 155 (391)
T ss_dssp HHHHHHCCCCCGGGEEE--ESSHHHHHHHHH--HHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHH
T ss_pred HHHHHhCCCCCHHHEEE--ecChHHHHHHHH--HHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHH
Confidence 99544444456789999 999999999995 33478999999999999999999999999999999954445678999
Q ss_pred hHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435 167 GLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246 (407)
Q Consensus 167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i 246 (407)
++++. +++++++ ++|+||||++++.+++++|+++|++||+++|+||+|.++.+++..... ....++++
T Consensus 156 ~l~~~-----~~~~v~i-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~------~~~~~~~i 223 (391)
T 3h14_A 156 DFAGL-----DLAGLMV-ASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTA------LELTDECY 223 (391)
T ss_dssp HHTTS-----CCSEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCG------GGTCSSSE
T ss_pred HHHhc-----CCeEEEE-CCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcCh------hhcCCCEE
Confidence 88764 4677777 799999999999999999999999999999999999999886532111 12257889
Q ss_pred EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII 326 (407)
Q Consensus 247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 326 (407)
+++|+||.+|++|+|+||+ +++ +++.+ .+.........+++.+++.++..+++.. +.+++.+++++
T Consensus 224 ~~~s~sK~~g~~G~r~G~~--~~~-~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~ 289 (391)
T 3h14_A 224 VINSFSKYFSMTGWRVGWM--VVP-EDQVR----VVERIAQNMFICAPHASQVAALAALDCD-------AELQANLDVYK 289 (391)
T ss_dssp EEEESSSTTCCTTSCCEEE--ECC-GGGHH----HHHHHHHHTTCCCCHHHHHHHHHHTTCH-------HHHHHHHHHHH
T ss_pred EEEechhccCCccceeEEE--EeC-HHHHH----HHHHHHhhhccCCCHHHHHHHHHHhCCh-------HHHHHHHHHHH
Confidence 9999999999999999999 454 44444 4444445556688889999888888732 56788889999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-----CHHH-HHHhHhhccEEEcCC---------C--eEEecCCCC
Q 015435 327 SMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-----NSEQ-VAFMTKEYHIYMTSD---------G--RISMAGLSS 389 (407)
Q Consensus 327 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~l~~~gi~~~~g---------g--Ris~~~~~~ 389 (407)
++++++.+.|++.+. ..+..+.++++.|+.+ +.+. ...+++++||.+.|| + ||+++. ++
T Consensus 290 ~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~-~~ 365 (391)
T 3h14_A 290 ANRKLMLERLPKAGF---TRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR-AT 365 (391)
T ss_dssp HHHHHHHHHHHHHTC---CCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-CH
T ss_pred HHHHHHHHHHHHcCC---CcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-CH
Confidence 999999999998873 3345777888888743 4444 456677679999874 1 999997 88
Q ss_pred CChhHHHHHHHHHHHhh
Q 015435 390 KTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 390 e~i~~~~~~l~~~l~~~ 406 (407)
+++++++++|++++++.
T Consensus 366 ~~i~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 366 ADIEEGLDRLEAFMQAR 382 (391)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998753
No 21
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=1.6e-42 Score=330.17 Aligned_cols=367 Identities=16% Similarity=0.203 Sum_probs=281.2
Q ss_pred ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435 6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA 85 (407)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a 85 (407)
+.+|+...+++++..+...+.+. +++|||+.|.+ .. +.++.+.+++.+.+. . ...+|++..|..++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~-~~~~y~~~~g~~~l~~~la 73 (389)
T 1gd9_A 3 LSDRLELVSASEIRKLFDIAAGM--KDVISLGIGEP---DF-DTPQHIKEYAKEALD--K-GLTHYGPNIGLLELREAIA 73 (389)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHTC--SSCEECCCCSC---SS-CCCHHHHHHHHHHHH--T-TCCSCCCTTCCHHHHHHHH
T ss_pred hhhHhHhCChhHHHHHHHHHhhh--cCeEecCCCCC---CC-CCCHHHHHHHHHHHh--C-CCCCCCCCCCcHHHHHHHH
Confidence 34556666777777777665543 68999999975 22 345566666666664 2 2356887789999999999
Q ss_pred HHHhCCCCCCCCCCc-eEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435 86 KLILGADSPAIKDNR-VTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN 164 (407)
Q Consensus 86 ~~~~~~~~~~~~~~~-i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d 164 (407)
+++....+..+++++ +++ |+|+++++.+++ ...+.+||+|++++|+|+++...++..|.+++.+|...+.++.+|
T Consensus 74 ~~~~~~~g~~~~~~~~v~~--~~g~~~a~~~~~--~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d 149 (389)
T 1gd9_A 74 EKLKKQNGIEADPKTEIMV--LLGANQAFLMGL--SAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLN 149 (389)
T ss_dssp HHHHHHHCCCCCTTTSEEE--ESSTTHHHHHHH--TTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCC
T ss_pred HHHHHHhCCCCCCCCeEEE--cCChHHHHHHHH--HHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCC
Confidence 999533333345688 999 999999999994 333678999999999999999999999999999998432356789
Q ss_pred hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435 165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244 (407)
Q Consensus 165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~ 244 (407)
++++++.+. ++++++++ ++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++.. ..++..+....++
T Consensus 150 ~~~l~~~l~--~~~~~v~~-~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~~~~~~~~ 224 (389)
T 1gd9_A 150 VDELKKYVT--DKTRALII-NSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDAR--HYSIASLDGMFER 224 (389)
T ss_dssp HHHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC--CCCGGGSTTCGGG
T ss_pred HHHHHHhcC--cCceEEEE-ECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCC--CCCHhhccCCCCC
Confidence 999999987 45566666 899999999999999999999999999999999999998875421 1122112111357
Q ss_pred EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435 245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR 324 (407)
Q Consensus 245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 324 (407)
++++.|+||.++++|+|+||+ +++ ++ +.+.+.........+++.+.+.++..+++... . .+++++.+++
T Consensus 225 ~i~~~s~sK~~~~~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~---~-~~~~~~~~~~ 293 (389)
T 1gd9_A 225 TITVNGFSKTFAMTGWRLGFV--AAP-SW----IIERMVKFQMYNATCPVTFIQYAAAKALKDER---S-WKAVEEMRKE 293 (389)
T ss_dssp EEEEEESTTTTTCGGGCCEEE--ECC-HH----HHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHH---H-HHHHHHHHHH
T ss_pred EEEEecChhhcCCcccceEEE--EEC-HH----HHHHHHHHHhhhccCCCHHHHHHHHHHHhCCC---c-chHHHHHHHH
Confidence 899999999999999999999 565 44 44445444444456788899999988888642 1 1267888899
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-----CHHHH-HHhHhhccEEEcCC--------C--eEEecCCC
Q 015435 325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-----NSEQV-AFMTKEYHIYMTSD--------G--RISMAGLS 388 (407)
Q Consensus 325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~l~~~gi~~~~g--------g--Ris~~~~~ 388 (407)
++++++++.+.|++.+ +.+..+.++++.|+.+ +.+.+ ..+++++||.+.+| + ||+++. +
T Consensus 294 ~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~ 368 (389)
T 1gd9_A 294 YDRRRKLVWKRLNEMG----LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-A 368 (389)
T ss_dssp HHHHHHHHHHHHHHTT----CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-C
T ss_pred HHHHHHHHHHHHHHcC----CeecCCCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-C
Confidence 9999999999999886 6667788888888754 44444 45555799999875 1 999986 8
Q ss_pred CCChhHHHHHHHHHHHhh
Q 015435 389 SKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 389 ~e~i~~~~~~l~~~l~~~ 406 (407)
++++++++++|++++++.
T Consensus 369 ~~~i~~~l~~l~~~~~~~ 386 (389)
T 1gd9_A 369 YEKLEEAMDRMERVLKER 386 (389)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 899999999999998764
No 22
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=1.2e-42 Score=331.87 Aligned_cols=358 Identities=13% Similarity=0.131 Sum_probs=273.1
Q ss_pred ccCCCCCchhhhhHhh---hhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHH
Q 015435 10 IVRAPEDPILGVTVAY---NKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAK 86 (407)
Q Consensus 10 ~~~~~~~~~~~~~~~~---~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~ 86 (407)
+...+++++....... ...+++++|||+.|.+ .. +.++.+.+++.+.+. ...+|++..|..++|+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~----~~~~y~~~~g~~~lr~~la~ 77 (396)
T 3jtx_A 6 LKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEP---KH-PTPKVITDALTASLH----ELEKYPLTAGLPELRQACAN 77 (396)
T ss_dssp HHHCCSCHHHHHHHHTTTCCCCTTCCCEECSCCSC---CS-CCCHHHHHHHHHTGG----GGGSCCCTTCCHHHHHHHHH
T ss_pred hccCCCChHHHHHHHHHhhhhccCCCeEEeCCcCC---CC-CCCHHHHHHHHHHhh----hccCCCCCCCcHHHHHHHHH
Confidence 3344445554444333 3356789999999984 32 445455555544442 45679888899999999999
Q ss_pred HHhCCCCCC-CCCC-ceEEeecCCcccHHHHHHHHHHhhcCC-----CeEEecCCCCCChHHHHhhcCceeeEEEeecCC
Q 015435 87 LILGADSPA-IKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQ-----LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPA 159 (407)
Q Consensus 87 ~~~~~~~~~-~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~g-----d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~ 159 (407)
++....+.. ++++ +|++ |+|+++++.++++. .+.+| |+|+++.|+|..+...++..|.+++.+++ +++
T Consensus 78 ~l~~~~g~~~~~~~~~i~~--t~g~~~al~~~~~~--~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~ 152 (396)
T 3jtx_A 78 WLKRRYDGLTVDADNEILP--VLGSREALFSFVQT--VLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANC-PAP 152 (396)
T ss_dssp HHHHHTTTCCCCTTTSEEE--ESSHHHHHHHHHHH--HCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEEC-CTT
T ss_pred HHHHhcCCCCCCCCCeEEE--cCCcHHHHHHHHHH--HhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeec-CCC
Confidence 995444443 4567 9999 99999999999533 36786 79999999999999999999999999999 466
Q ss_pred CCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC-CchhHHH-HH
Q 015435 160 TRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL-DADAQSV-RM 237 (407)
Q Consensus 160 ~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~-~~~~~~~-~~ 237 (407)
++.+|++++++++. ++++++++ ++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ....... ..
T Consensus 153 g~~~d~~~l~~~~~--~~~~~v~l-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 229 (396)
T 3jtx_A 153 SFNPDWRSISEEVW--KRTKLVFV-CSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQ 229 (396)
T ss_dssp TCCCCGGGSCHHHH--HTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHH
T ss_pred CCccCHHHHHHhhc--cCcEEEEE-ECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhh
Confidence 67789999999998 45677777 79999999999999999999999999999999999999988652 1111111 11
Q ss_pred HHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHH
Q 015435 238 FVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLE 317 (407)
Q Consensus 238 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 317 (407)
+....++++++.|+||.|+++|+|+||+ +++ ++ +.+.+.........+++.+++.++..++++. ++
T Consensus 230 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~ 295 (396)
T 3jtx_A 230 LGRSRQKLLMFTSLSKRSNVPGLRSGFV--AGD-AE----LLKNFLLYRTYHGSAMSIPVQRASIAAWDDE-------QH 295 (396)
T ss_dssp TTCCCTTEEEEEESTTTSSCGGGCCEEE--EEC-HH----HHHHHHHHHHHHTCCCCHHHHHHHHHHHHCC-------HH
T ss_pred cccccCcEEEEeccccccCCcccceEEE--EeC-HH----HHHHHHHHHhhcccCCCHHHHHHHHHHhCCH-------HH
Confidence 1113578999999999999999999999 454 44 4444554544455688999999998888764 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC----HHHHHHhHhhccEEEcCC--------------
Q 015435 318 LKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN----SEQVAFMTKEYHIYMTSD-------------- 379 (407)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi~~~~g-------------- 379 (407)
+++.+++++++++.+.+.|++. +.+..+.+++|.|+.+. .++...+++++||.+.||
T Consensus 296 ~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~ 370 (396)
T 3jtx_A 296 VIDNRRLYQEKFERVIPILQQV-----FDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGE 370 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT-----SCCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----CCccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCC
Confidence 7788899999999999999765 24456778999998664 344566768789999763
Q ss_pred C--eEEecCCCCCChhHHHHHHHHHH
Q 015435 380 G--RISMAGLSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 380 g--Ris~~~~~~e~i~~~~~~l~~~l 403 (407)
+ ||+++. +++++++++++|++++
T Consensus 371 ~~iRis~~~-~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 371 GYVRIALVA-DVATCVKAAEDIVSLY 395 (396)
T ss_dssp TEEEEECCS-CHHHHHHHHHHHHHHC
T ss_pred CeEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 2 999987 8899999999998875
No 23
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=4.7e-43 Score=336.39 Aligned_cols=368 Identities=15% Similarity=0.174 Sum_probs=265.9
Q ss_pred ccccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435 6 VFGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL 83 (407)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ 83 (407)
+..++...+++.+........ ...++++|||+.|.+ +. +.++.+.+++.+.+. ....++|++..|..++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~---~~-~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~l~~~ 83 (412)
T 2x5d_A 10 RFARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNP---DG-PTPPHIVEKLCTVAQ--REDTHGYSTSRGIPRLRRA 83 (412)
T ss_dssp -----------CHHHHHHHHHHHHHTTCCCEECSSCCC---CS-CCCHHHHHHHHHTC-----------CTTCCHHHHHH
T ss_pred hhHHHhhcCchHHHHHHHHHHHHhhcCCCEEecCCCCC---CC-CCCHHHHHHHHHHHh--CCCCCCCCCCCCcHHHHHH
Confidence 456677776666655444332 234678999999985 22 334455555544443 2224578888899999999
Q ss_pred HHHHHhCCCCCCCCC-CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC
Q 015435 84 SAKLILGADSPAIKD-NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG 162 (407)
Q Consensus 84 ~a~~~~~~~~~~~~~-~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 162 (407)
+++++....+..+++ ++|++ |+|+++++.+++.. .+.+||+|+++.|+|.++...++..|.+++.+|..++.++.
T Consensus 84 ia~~~~~~~g~~~~~~~~v~~--t~g~~~a~~~~~~~--~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 159 (412)
T 2x5d_A 84 ISHWYRDRYDVQIDPESEAIV--TIGSKEGLAHLMLA--TLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFF 159 (412)
T ss_dssp HHHHHHHHHCCCCCTTTSEEE--ESCHHHHHHHHHHH--HCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHH
T ss_pred HHHHHHHHhCCCCCCCcCEEE--cCChHHHHHHHHHH--hCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCC
Confidence 999994333333455 69999 99999999999544 36799999999999999999999999999999984222344
Q ss_pred cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435 163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG 242 (407)
Q Consensus 163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~ 242 (407)
+|++++++.+. ++++++++ ++||||||.+++.+++++|+++|++||+++|+||+|..+.+.+.. ..++..+....
T Consensus 160 ~d~~~l~~~i~--~~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~ 234 (412)
T 2x5d_A 160 NELERAIRESI--PKPRMMIL-GFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWK--APSIMQVPGAK 234 (412)
T ss_dssp HHHHHHHHTEE--SCCSEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCGGGSTTGG
T ss_pred CCHHHHHHhcc--cCceEEEE-CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC--CCChhhccCcc
Confidence 78899999887 56778777 899999999999999999999999999999999999999875321 11221121124
Q ss_pred CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435 243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA 322 (407)
Q Consensus 243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 322 (407)
+++++++|+||.++++|+|+||+ +++ ++ +.+.+.........+++.+++.++..+++... +++++.+
T Consensus 235 ~~~i~~~s~sK~~~~~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~ 301 (412)
T 2x5d_A 235 DIAVEFFTLSKSYNMAGWRIGFM--VGN-PE----LVSALARIKSYHDYGTFTPLQVAAIAALEGDQ------QCVRDIA 301 (412)
T ss_dssp GTEEEEEECC-CCSCTTSCCEEE--EEC-HH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCS------HHHHHHH
T ss_pred CcEEEEecCccccCCcccceEEE--EcC-HH----HHHHHHHHHhhhccCCCHHHHHHHHHHHhCCH------HHHHHHH
Confidence 67899999999999999999999 564 44 44444444444455788899999988887643 4577888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-------CHHH-HHHhHhhccEEEcCC--------C--eEEe
Q 015435 323 DRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-------NSEQ-VAFMTKEYHIYMTSD--------G--RISM 384 (407)
Q Consensus 323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~l~~~gi~~~~g--------g--Ris~ 384 (407)
++++++++++.+.|++.+ +.+..+.+|+|.|+.+ +... ...+++++||.+.+| + ||++
T Consensus 302 ~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~ 377 (412)
T 2x5d_A 302 RQYQQRRDVLVKGLREAG----WMVENPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFAL 377 (412)
T ss_dssp HHHHHHHHHHHHHHHHHT----CCCCCCSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCC----CEecCCCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEe
Confidence 999999999999999886 6667788888888754 3444 445557689999875 2 9999
Q ss_pred cCCCCCChhHHHHHHHHHHHhh
Q 015435 385 AGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 385 ~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
+. +++++++++++|+++++++
T Consensus 378 ~~-~~~~l~~~l~~l~~~l~~~ 398 (412)
T 2x5d_A 378 IE-NRDRLRQAVRGIKAMFRAD 398 (412)
T ss_dssp CS-CHHHHHHHHHHHHHHHHHT
T ss_pred cC-CHHHHHHHHHHHHHHHHhc
Confidence 97 8899999999999998765
No 24
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.8e-42 Score=334.96 Aligned_cols=358 Identities=13% Similarity=0.179 Sum_probs=265.9
Q ss_pred CeeeeeeeeeecCCCcc----------------------ccchhHHHHHHHHhcccc-ccccCCCCCCcHHHHHHHHHHH
Q 015435 32 VKLNLGVGAYRTEEGKP----------------------LVLNVVRKAEQLLVNDQS-RVKEYLPIVGLVDFNKLSAKLI 88 (407)
Q Consensus 32 ~~i~l~~g~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~-~~~~y~~~~g~~~l~~~~a~~~ 88 (407)
++|++.+|.|- +.++. .|...++++.+.+.+... ....|++..|.+++|+++++++
T Consensus 64 ~~i~~nig~p~-~~~~~~~~~~r~~l~l~~~p~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~ 142 (498)
T 3ihj_A 64 EVIRANIGDAQ-AMGQQPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYI 142 (498)
T ss_dssp SCBCCC-----------CCHHHHHHHHHHHCGGGGGCSSSCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHH
T ss_pred hhhhcCCcCcc-cccCCcchHHHHHHHHhcCccccCcccCCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 89999999872 22221 255566666555541111 3567999999999999999999
Q ss_pred hCCC-CCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCC----eEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435 89 LGAD-SPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQL----TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL 163 (407)
Q Consensus 89 ~~~~-~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd----~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~ 163 (407)
...+ +..+++++|++ |+|+++++.+++..+ +.+|| .|+++.|+|+.+...++..|.+++.++++++.++++
T Consensus 143 ~~~~gG~~~~~~~i~~--t~G~~~ai~~~~~~l--~~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~ 218 (498)
T 3ihj_A 143 TRRDGGVPADPDNIYL--TTGASDGISTILKIL--VSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWAL 218 (498)
T ss_dssp HHHTTTCCCCGGGEEE--ESSHHHHHHHHHHHH--CCCCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBC
T ss_pred HHhcCCCCCCcccEEE--cCCHHHHHHHHHHHH--cCCCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCC
Confidence 6444 35567799999 999999999995433 66765 999999999999999999999999999965556899
Q ss_pred ChhhHHHHHHcCC---CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435 164 NFQGLLEDLRAAP---SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA 240 (407)
Q Consensus 164 d~~~l~~~i~~~~---~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~ 240 (407)
|++++++++.+.+ +++++++ ++||||||.+++.+++++|+++|++||++||+||+|..+.+++. ....++..+..
T Consensus 219 d~~~le~~l~~~~~~~~~k~i~l-~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~-~~~~s~~~~~~ 296 (498)
T 3ihj_A 219 NVNELRRAVQEAKDHCDPKVLCI-INPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPD-CRFHSFKKVLY 296 (498)
T ss_dssp CHHHHHHHHHHHTTTSEEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTT-CCCCCHHHHHH
T ss_pred CHHHHHHHHHhhhccCCCeEEEE-ECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCC-CCcCCHHHHHH
Confidence 9999999997421 3566666 69999999999999999999999999999999999999998642 11223322221
Q ss_pred -------cCCcEEEEEecCccc-cccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh----
Q 015435 241 -------DGGECLVAQSYAKNM-GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS---- 308 (407)
Q Consensus 241 -------~~~~~i~~~s~sK~~-~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 308 (407)
....+++++||||.| |++|+|+||++++..++++.+.+.. ... ...+++.++|.++..+++.+
T Consensus 297 ~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~----~~~-~~~~~~~~~q~a~~~~l~~~~~g~ 371 (498)
T 3ihj_A 297 EMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVK----LLS-VRLCPPVSGQAAMDIVVNPPVAGE 371 (498)
T ss_dssp HTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHH----HHH-HSCCCCHHHHHHHHHHTCCCCTTS
T ss_pred HhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHH----HHh-ccCCCCHHHHHHHHHHhcCCccCc
Confidence 234579999999999 8899999999422356665555444 322 34578889999998888752
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC---------------CHHH--HHHhHhh
Q 015435 309 TMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL---------------NSEQ--VAFMTKE 371 (407)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~--~~~~l~~ 371 (407)
..++.|.+..++++++++++++++.+.|++.+. +.+..+++++|.|+.+ +.+. +.++|++
T Consensus 372 ~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g---~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~ 448 (498)
T 3ihj_A 372 ESFEQFSREKESVLGNLAKKAKLTEDLFNQVPG---IHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEE 448 (498)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT---EECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHH
Confidence 234455566778889999999999999998732 8888999999999632 2333 5778888
Q ss_pred ccEEEcCC-------C----eEEecCCCCCChhHHHHHHHHHHHh
Q 015435 372 YHIYMTSD-------G----RISMAGLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 372 ~gi~~~~g-------g----Ris~~~~~~e~i~~~~~~l~~~l~~ 405 (407)
+||.+.|| | |++++ .+++++++++++|++++++
T Consensus 449 ~gI~v~pG~~f~~~~~~~~~Ris~~-~~~e~l~~~i~~L~~~~~~ 492 (498)
T 3ihj_A 449 TGICVVPGSGFGQREGTYHFRMTIL-PPVEKLKTVLQKVKDFHIN 492 (498)
T ss_dssp HCBCCEEGGGTCCCTTCCBEEEECC-SCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcccCCCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHHH
Confidence 99999885 1 99997 4889999999999998865
No 25
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=2.5e-42 Score=328.73 Aligned_cols=368 Identities=15% Similarity=0.133 Sum_probs=280.1
Q ss_pred ccccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435 6 VFGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL 83 (407)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ 83 (407)
+.+|+...+++++..+.+.+. ...++++|||+.|.+ .. +.++.+.+++.+.+. . ...+|++..|..++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~-~~~~y~~~~g~~~l~~~ 75 (388)
T 1j32_A 3 LAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEP---DF-NTPKHIVEAAKAALE--Q-GKTRYGPAAGEPRLREA 75 (388)
T ss_dssp CCHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSC---SS-CCCHHHHHHHHHHHH--T-TCCSCCCTTCCHHHHHH
T ss_pred hhhHhHhCCccHHHHHHHHHHHHHhcCCCEEECCCCCC---CC-CCCHHHHHHHHHHHh--c-CCCCCCCCCCCHHHHHH
Confidence 345666667777766665444 234678999999975 22 345566666666664 2 24568888899999999
Q ss_pred HHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435 84 SAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL 163 (407)
Q Consensus 84 ~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~ 163 (407)
+++++....+..+++++|++ |+|+++++.+++.. .+.+||+|++++|+|.++...++..|.+++.++...+.++.+
T Consensus 76 la~~~~~~~g~~~~~~~v~~--~~g~~~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~ 151 (388)
T 1j32_A 76 IAQKLQRDNGLCYGADNILV--TNGGKQSIFNLMLA--MIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKV 151 (388)
T ss_dssp HHHHHHHHHCCCCCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCC
T ss_pred HHHHHHHhcCCCCChhhEEE--cCCHHHHHHHHHHH--hcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCC
Confidence 99999543343345689999 99999999999543 377999999999999999999999999999999843335678
Q ss_pred ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH-cC
Q 015435 164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA-DG 242 (407)
Q Consensus 164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~-~~ 242 (407)
|++++++.+. ++++++++ ++|+||||.+++.+++++|+++|++||+++|+|++|.++.+++... .++..+.. ..
T Consensus 152 d~~~l~~~l~--~~~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~ 226 (388)
T 1j32_A 152 SPEQIRQAIT--PKTKLLVF-NTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQH--LSIGAASPEAY 226 (388)
T ss_dssp CHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC--CCGGGSCHHHH
T ss_pred CHHHHHHhcC--cCceEEEE-eCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC--CCHHHcccccc
Confidence 9999999987 45566666 8899999999999999999999999999999999999988764211 11111111 12
Q ss_pred CcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435 243 GECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA 322 (407)
Q Consensus 243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 322 (407)
+.++++.|+||.++++|+|+||+ +++ ++ +.+.+.......+.+++.+++.++..+++... +++++.+
T Consensus 227 ~~~~~~~s~sK~~~~~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~ 293 (388)
T 1j32_A 227 ERSVVCSGFAKTYAMTGWRVGFL--AGP-VP----LVKAATKIQGHSTSNVCTFAQYGAIAAYENSQ------DCVQEML 293 (388)
T ss_dssp HTEEEEEESTTTTTCTTTCCEEE--ECC-HH----HHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCS------HHHHHHH
T ss_pred CCEEEEeechhccCCcccceEEE--EeC-HH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhCCc------HHHHHHH
Confidence 46899999999999999999999 455 43 44445545444556788888988888886432 4567788
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-----CHHHH-HHhHhhccEEEcCC------C--eEEecCCC
Q 015435 323 DRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-----NSEQV-AFMTKEYHIYMTSD------G--RISMAGLS 388 (407)
Q Consensus 323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~l~~~gi~~~~g------g--Ris~~~~~ 388 (407)
++++++++++.+.|++.+. +.+..+.++++.|+.+ +.+.+ ..+++++||.+.+| + ||+++. +
T Consensus 294 ~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~-~ 369 (388)
T 1j32_A 294 AAFAERRRYMLDALNAMPG---LECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYAT-D 369 (388)
T ss_dssp HHHHHHHHHHHHHHHTCTT---CBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCS-C
T ss_pred HHHHHHHHHHHHHHhhCCC---CcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecC-C
Confidence 9999999999999998732 6777788888888744 44444 45555689999875 2 999985 8
Q ss_pred CCChhHHHHHHHHHHHhh
Q 015435 389 SKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 389 ~e~i~~~~~~l~~~l~~~ 406 (407)
++++++++++|+++++++
T Consensus 370 ~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 370 LDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899999999999998764
No 26
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=5.9e-43 Score=335.09 Aligned_cols=344 Identities=15% Similarity=0.172 Sum_probs=270.6
Q ss_pred CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCC-CceEEeecCCcc
Q 015435 32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKD-NRVTTVQCLSGT 110 (407)
Q Consensus 32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~-~~i~~~~t~g~t 110 (407)
++|||++|.+ ++.+.++.+.+++.+.+. ......|.+..|..++++++++++....+..+++ ++|++ |+|++
T Consensus 40 ~~id~~~g~~---~~~~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~--~~g~~ 112 (407)
T 3nra_A 40 RPVDFSHGDV---DAHEPTPGAFDLFSAGVQ--SGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLII--TPGTQ 112 (407)
T ss_dssp CCEETTSCCT---TTSCCCTTHHHHHHHHHH--HTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEE--ESHHH
T ss_pred ceeeecCcCC---CCCCCcHHHHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCCcH
Confidence 5899999976 444666677777777765 2234468888899999999999984444444444 79999 99999
Q ss_pred cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec----CCCCCcChhhHHHHHHcCCCCcEEEEecC
Q 015435 111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD----PATRGLNFQGLLEDLRAAPSGAIVLLHAC 186 (407)
Q Consensus 111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~----~~~~~~d~~~l~~~i~~~~~~~~v~i~~~ 186 (407)
+++.+++ ...+.+||+|+++.|+|.++...++..|.+++.++++. +.++.+|++++++.+. ++++++++ ++
T Consensus 113 ~a~~~~~--~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--~~~~~v~~-~~ 187 (407)
T 3nra_A 113 GALFLAV--AATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK--AGARVFLF-SN 187 (407)
T ss_dssp HHHHHHH--HTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH--TTCCEEEE-ES
T ss_pred HHHHHHH--HHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHh--hCCcEEEE-cC
Confidence 9999994 44477999999999999999999999999999999831 2567899999999998 45677766 88
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH-HcCCcEEEEEecCccccccCCCccee
Q 015435 187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV-ADGGECLVAQSYAKNMGLYGERVGAL 265 (407)
Q Consensus 187 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G~~ 265 (407)
|+||||.+++.+++++|+++|++||+++|+||+|..+.+++.. ..++..+. ...++++++.|+||.++++|+|+||+
T Consensus 188 p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 265 (407)
T 3nra_A 188 PNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGAS--YTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVA 265 (407)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCC--CCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEE
T ss_pred CCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC--CCChhhcCcccCCcEEEEeCcccccCCCeeeEEEE
Confidence 9999999999999999999999999999999999998876432 12222222 23567899999999999999999999
Q ss_pred EEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 015435 266 SIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDW 345 (407)
Q Consensus 266 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 345 (407)
+++ + .+.+.+.........+++.+++.++..+++... .++++.+++++++++++.+.|++.+. +
T Consensus 266 --~~~-~----~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~---~ 329 (407)
T 3nra_A 266 --FGS-R----AIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAP------GWMEDRIARHQAIRDELLHVLRGCEG---V 329 (407)
T ss_dssp --EEC-H----HHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCT------THHHHHHHHHHHHHHHHHHHHHTSTT---C
T ss_pred --EcC-H----HHHHHHHHHHhhhccCCChHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHhcCCC---c
Confidence 565 4 455555555555566778888888888887532 34667778889999999999998732 7
Q ss_pred ccccCCceeEEecCC-----CHHH-HHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435 346 SHIIKQIGMFTFTGL-----NSEQ-VAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 346 ~~~~~~~~~~~~~~~-----~~~~-~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
.+..+.+++|.|+.+ +.+. ...+++++||.+.+|. ||+++. +++++++++++|+++++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 330 FARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp BCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred eeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHHHh
Confidence 777888889998854 3444 4556577899998752 999996 8899999999999998764
No 27
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=100.00 E-value=7.5e-43 Score=334.03 Aligned_cols=364 Identities=15% Similarity=0.138 Sum_probs=270.9
Q ss_pred ccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHH
Q 015435 8 GKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKL 87 (407)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~ 87 (407)
.++...+++.+..........++.++|||+.|.+ +. +.++.+.+++.+.+. .....+|++..|..++|++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~---~~-~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~lr~~ia~~ 97 (404)
T 2o1b_A 24 NKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIP---DG-PTPQGIIDHFQKALT--IPENQKYGAFHGKEAFKQAIVDF 97 (404)
T ss_dssp HHHHTSCCCTTC-------CCCSSCCEECCCCSC---SS-CCCHHHHHHHHHHTT--CHHHHSCCCTTCCHHHHHHHHHH
T ss_pred hHhhhCCchHHHHHHHHHHhcCCCCEEecCCcCC---CC-CCCHHHHHHHHHHHh--CCCCCCCCCCCCCHHHHHHHHHH
Confidence 3444445555444444333234567999999985 22 334455555555553 22245687778999999999999
Q ss_pred HhCCCCCCCCC-CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChh
Q 015435 88 ILGADSPAIKD-NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQ 166 (407)
Q Consensus 88 ~~~~~~~~~~~-~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~ 166 (407)
+....+..+++ ++|++ |+|+++++.++++. .+.+||+|+++.|+|.++...++..|.+++.++.. ++++.+|++
T Consensus 98 ~~~~~g~~~~~~~~v~~--t~G~~~al~~~~~~--l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~ 172 (404)
T 2o1b_A 98 YQRQYNVTLDKEDEVCI--LYGTKNGLVAVPTC--VINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLE-PPHYLPDWS 172 (404)
T ss_dssp HHHHHCCCCCTTTSEEE--ESSHHHHHHHHHHH--HCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECC-TTTCCCCGG
T ss_pred HHHHhCCCCCCcccEEE--cCCcHHHHHHHHHH--hcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccC-cccCcCCHH
Confidence 94333333444 79999 99999999999543 36789999999999999999999999999999984 345568999
Q ss_pred hHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435 167 GLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246 (407)
Q Consensus 167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i 246 (407)
++++.+. ++++++++ ++|+||||.+++.+++++|+++|++||++||+||+|..+.+++...+... +....++++
T Consensus 173 ~l~~~l~--~~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~---~~~~~~~~i 246 (404)
T 2o1b_A 173 KVDSQII--DKTKLIYL-TYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILA---SENGKDVAI 246 (404)
T ss_dssp GSCHHHH--HHEEEEEE-CSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGG---STTHHHHEE
T ss_pred HHHHhhc--cCceEEEE-cCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhh---cCCCCCCEE
Confidence 9999887 45677776 78999999999999999999999999999999999999887542111111 111124689
Q ss_pred EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII 326 (407)
Q Consensus 247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 326 (407)
+++|+||.++++|+|+||+ +++ ++ +.+.+.........+++.+.|.++..+++... +++++.+++++
T Consensus 247 ~~~s~sK~~g~~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~ 313 (404)
T 2o1b_A 247 EIYSLSKGYNMSGFRVGFA--VGN-KD----MIQALKKYQTHTNAGMFGALQDAAIYALNHYD------DFLEEQSNVFK 313 (404)
T ss_dssp EEEESTTTTTCGGGCCEEE--EEC-HH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCH------HHHHHHHHHHH
T ss_pred EEEecchhccCchhheEeE--ecC-HH----HHHHHHHHHhhccCCCCHHHHHHHHHHHhcCH------HHHHHHHHHHH
Confidence 9999999999999999999 564 44 44444444444455788899998888886532 55778889999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccCCceeEEecCC----CHH-HHHHhHhhccEEEcCC--------C--eEEecCCCCCC
Q 015435 327 SMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL----NSE-QVAFMTKEYHIYMTSD--------G--RISMAGLSSKT 391 (407)
Q Consensus 327 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~l~~~gi~~~~g--------g--Ris~~~~~~e~ 391 (407)
++++++.+.|++.+ +.+..+.+++|.|+.+ +.+ +...+++++||.+.+| + ||+++. ++++
T Consensus 314 ~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~e~ 388 (404)
T 2o1b_A 314 TRRDRFEAMLAKAD----LPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-DDQK 388 (404)
T ss_dssp HHHHHHHHHHHHTT----CCEECCCBSSEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS-CTTH
T ss_pred HHHHHHHHHHHhcC----CeecCCCcceEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC-CHHH
Confidence 99999999999886 6777788888888754 334 4556666789999875 2 999996 8899
Q ss_pred hhHHHHHHHHHHHhh
Q 015435 392 VPHLTDAIHAAVTRM 406 (407)
Q Consensus 392 i~~~~~~l~~~l~~~ 406 (407)
+++++++|++++++.
T Consensus 389 l~~~l~~l~~~l~~~ 403 (404)
T 2o1b_A 389 LDEAAIRLTELAYLY 403 (404)
T ss_dssp HHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887653
No 28
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=100.00 E-value=5.7e-43 Score=335.53 Aligned_cols=363 Identities=14% Similarity=0.124 Sum_probs=278.8
Q ss_pred cccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHH
Q 015435 9 KIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLI 88 (407)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~ 88 (407)
|+...+++.+..+.... .++++|+|+.|.+ +. +.++.+.+++.+.+. .....+|.+..|..++|+++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~---~~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~l~~~la~~~ 74 (410)
T 3e2y_A 4 RIEGLDSNVWVEFTKLA---ADPSVVNLGQGFP---DI-SPPSYVKEELSKAAF--IDNMNQYTRGFGHPALVKALSCLY 74 (410)
T ss_dssp GGTTCCCCHHHHTTTTT---TSTTSEECSSCCC---CS-CCCHHHHHHHHHHHT--CGGGGSCCCTTCCHHHHHHHHHHH
T ss_pred hhccCCccHHHHHHHHh---cCCCeEEecCCCC---CC-CCCHHHHHHHHHHHh--CccccCCCCCCChHHHHHHHHHHH
Confidence 45555666655554432 3468999999985 33 556666666666664 334567988889999999999999
Q ss_pred hCCCCCCCCC-CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec---------C
Q 015435 89 LGADSPAIKD-NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD---------P 158 (407)
Q Consensus 89 ~~~~~~~~~~-~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~---------~ 158 (407)
....+..+++ ++|++ |+|+++++.+++. ..+.+||+|+++.|+|..+...++..|.+++.+++.. .
T Consensus 75 ~~~~~~~~~~~~~i~~--~~g~~~a~~~~~~--~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~ 150 (410)
T 3e2y_A 75 GKIYQRQIDPNEEILV--AVGAYGSLFNSIQ--GLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTS 150 (410)
T ss_dssp HHHHTSCCCTTTSEEE--ESHHHHHHHHHHH--HHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBG
T ss_pred HHHhCCCCCCCCCEEE--eCCcHHHHHHHHH--HhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccc
Confidence 5444444556 79999 9999999999953 3477999999999999999999999999999999852 1
Q ss_pred CCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHH
Q 015435 159 ATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF 238 (407)
Q Consensus 159 ~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~ 238 (407)
.++.+|++++++.+. ++++++++ ++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++.. ..++..+
T Consensus 151 ~~~~~d~~~l~~~~~--~~~~~v~~-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~~ 225 (410)
T 3e2y_A 151 SDWTFDPRELESKFS--SKTKAIIL-NTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHT--HVKIATL 225 (410)
T ss_dssp GGEECCHHHHHTTCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCGGGS
T ss_pred cCCcCCHHHHHhhcC--CCceEEEE-eCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCC--CCCHHHc
Confidence 345689999999886 45667666 899999999999999999999999999999999999999886531 1222222
Q ss_pred HHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChh-hHHhHHHH
Q 015435 239 VADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDST-MYKEWTLE 317 (407)
Q Consensus 239 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 317 (407)
....++++++.|+||.+|++|+|+||+ +++ +.+...+........++++.+.+.++..++++.. ....+.++
T Consensus 226 ~~~~~~~i~~~S~sK~~g~~G~r~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 298 (410)
T 3e2y_A 226 PGMWERTITIGSAGKTFSVTGWKLGWS--IGP-----AHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECY 298 (410)
T ss_dssp TTCGGGEEEEEEHHHHSSCGGGCCEEE--ECC-----HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSH
T ss_pred CCccCeEEEEecchhhcCCCCceEEEE--EEC-----HHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHH
Confidence 233467899999999999999999999 565 4455555555555566788899998888876310 00011245
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC----------------HHHHHHhHhhccEEEcCC--
Q 015435 318 LKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN----------------SEQVAFMTKEYHIYMTSD-- 379 (407)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~gi~~~~g-- 379 (407)
+++.+++++++++++.+.|++.+ +.+..+.+++|.|+.+. .+++..+++++||.+.||
T Consensus 299 ~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~ 374 (410)
T 3e2y_A 299 FNSLPKELEVKRDRMVRLLNSVG----LKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSA 374 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT----CEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC----CeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchh
Confidence 77888999999999999999887 77788889999987442 156677888899999774
Q ss_pred -----------C--eEEecCCCCCChhHHHHHHHH
Q 015435 380 -----------G--RISMAGLSSKTVPHLTDAIHA 401 (407)
Q Consensus 380 -----------g--Ris~~~~~~e~i~~~~~~l~~ 401 (407)
+ ||+++. +++++++++++|++
T Consensus 375 f~~~~~~~~~~~~iRis~~~-~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 375 FCDSKSKPHFEKLVRFCFIK-KDSTLDAAEEIFRA 408 (410)
T ss_dssp GSCTTTHHHHTTEEEEECCC-CHHHHHHHHHHHHT
T ss_pred hCCCCCCCCCCCEEEEEEcC-CHHHHHHHHHHHHh
Confidence 2 899986 89999999999875
No 29
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=9e-42 Score=324.98 Aligned_cols=361 Identities=17% Similarity=0.165 Sum_probs=277.7
Q ss_pred cccccCCCCCchhhhhHhhhh--cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435 7 FGKIVRAPEDPILGVTVAYNK--DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS 84 (407)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~ 84 (407)
.+++...+++++.++.+.+.+ .+++++|||+.|.+ .. +.++.+.+++.+.+. . ....|++..|..++|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~-~~~~y~~~~g~~~lr~~l 87 (389)
T 1o4s_A 15 SRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEP---DF-PTPEPVVEEAVRFLQ--K-GEVKYTDPRGIYELREGI 87 (389)
T ss_dssp CHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSC---SS-CCCHHHHHHHHHHHT--T-CCCCCCCTTCCHHHHHHH
T ss_pred HHHHhhcCccHHHHHHHHHHHHHhcCCCEEEccCCCC---CC-CCCHHHHHHHHHHHh--c-CCCCCCCCCCCHHHHHHH
Confidence 356666777777777665542 24678999999975 22 335556666666664 2 234687778999999999
Q ss_pred HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435 85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN 164 (407)
Q Consensus 85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d 164 (407)
++++....+..+++++|++ |+|+++++.+++..+ +.+||+|++++|+|..+...++..|.+++.+|.+.+.++.+|
T Consensus 88 a~~~~~~~g~~~~~~~v~~--~~g~t~al~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d 163 (389)
T 1o4s_A 88 AKRIGERYKKDISPDQVVV--TNGAKQALFNAFMAL--LDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPS 163 (389)
T ss_dssp HHHHHHHHTCCCCGGGEEE--ESHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCC
T ss_pred HHHHHHHhCCCCCHHHEEE--ecCHHHHHHHHHHHh--CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCC
Confidence 9999433333345689999 999999999995443 779999999999999999999999999999998432356789
Q ss_pred hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435 165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244 (407)
Q Consensus 165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~ 244 (407)
++++++.+. ++++++++ ++|+||||.+++.+++++|+++|++||+++|+||+|..+.+++. ..++..+....+.
T Consensus 164 ~~~l~~~l~--~~~~~v~~-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~---~~~~~~~~~~~~~ 237 (389)
T 1o4s_A 164 LEEVEGLLV--GKTKAVLI-NSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE---FTSILDVSEGFDR 237 (389)
T ss_dssp HHHHHHTCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSC---CCCHHHHCSSSTT
T ss_pred HHHHHHhcc--cCceEEEE-cCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC---CCCHhhcCCCCCc
Confidence 999999886 45566666 89999999999999999999999999999999999999887541 1223233222467
Q ss_pred EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435 245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR 324 (407)
Q Consensus 245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 324 (407)
+++++|+||.++++|+|+||+ +++ ++ +.+.+.........+++.+.+.++..++++. .++.+++
T Consensus 238 ~i~~~s~sK~~~~~G~r~G~l--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---------~~~~~~~ 301 (389)
T 1o4s_A 238 IVYINGFSKSHSMTGWRVGYL--ISS-EK----VATAVSKIQSHTTSCINTVAQYAALKALEVD---------NSYMVQT 301 (389)
T ss_dssp EEEEEESTTTTTCGGGCCEEE--ECC-HH----HHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC---------CHHHHHH
T ss_pred EEEEeechhhcCCcccceEEE--EeC-HH----HHHHHHHHhhhcccCCCHHHHHHHHHHHhcc---------HHHHHHH
Confidence 999999999999999999999 565 44 4444444444445577888898888888754 3566788
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC--CHHHH-HHhHhhccEEEcCC------C--eEEecCCCCCChh
Q 015435 325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL--NSEQV-AFMTKEYHIYMTSD------G--RISMAGLSSKTVP 393 (407)
Q Consensus 325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~l~~~gi~~~~g------g--Ris~~~~~~e~i~ 393 (407)
++++++++.+.|++.+ +.+..+.++++.|+.+ +.+.+ ..+++++||.+.++ + ||+++. ++++++
T Consensus 302 ~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~-~~~~l~ 376 (389)
T 1o4s_A 302 FKERKNFVVERLKKMG----VKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT-SIERLT 376 (389)
T ss_dssp HHHHHHHHHHHHHHTT----CCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS-CHHHHH
T ss_pred HHHHHHHHHHHHHhcC----CeeecCCcceEEEEeCCCCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeC-CHHHHH
Confidence 8889999999998876 6666778888888765 45544 45555789999876 2 999996 889999
Q ss_pred HHHHHHHHHHHh
Q 015435 394 HLTDAIHAAVTR 405 (407)
Q Consensus 394 ~~~~~l~~~l~~ 405 (407)
+++++|++++++
T Consensus 377 ~~l~~l~~~l~~ 388 (389)
T 1o4s_A 377 EALDRIEDFLNS 388 (389)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 999999998753
No 30
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=100.00 E-value=8.9e-42 Score=326.01 Aligned_cols=341 Identities=15% Similarity=0.196 Sum_probs=265.6
Q ss_pred CCCeeeeeeeeeecCCCccccchhHHHHHHHHhcc-ccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND-QSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
++++|||+.|.+ +. +.++.+.+++.+.+.+. .....+|.+..|..++|+++++++....+..+++++|++ |+|
T Consensus 34 ~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~--~~g 107 (398)
T 3ele_A 34 KENVYDFSIGNP---SI-PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYM--TMG 107 (398)
T ss_dssp GGGCEECCSCCC---CS-CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESS
T ss_pred CCCeEEeecCCC---CC-CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEE--ccC
Confidence 468999999964 44 44556666666666411 111567988899999999999999544444466789999 999
Q ss_pred cccHHHHHHHHHHhhcCC-CeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCC
Q 015435 109 GTGSLRVGAEFLARHYHQ-LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACA 187 (407)
Q Consensus 109 ~t~a~~~~~~~~~~~~~g-d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p 187 (407)
+++++.++++. .+.+| |+|+++.|+|..+...++..|.+++.+|++ ++++++|++++++++. ++++++++ ++|
T Consensus 108 ~~~al~~~~~~--l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~--~~~~~v~~-~~p 181 (398)
T 3ele_A 108 AAASLSICFRA--LTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPAD-TEHFQIDFDALEERIN--AHTRGVII-NSP 181 (398)
T ss_dssp HHHHHHHHHHH--HCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCC-TTTSSCCHHHHHHTCC--TTEEEEEE-CSS
T ss_pred HHHHHHHHHHH--HcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecC-CcCCcCCHHHHHHHhC--cCCCEEEE-cCC
Confidence 99999999543 47899 999999999999999999999999999984 4567899999999886 55667666 899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH------cCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC
Q 015435 188 HNPTGVDPTLEQWEQIRQLMRS------KGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER 261 (407)
Q Consensus 188 ~NPtG~~~~~~~l~~i~~~~~~------~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 261 (407)
|||||.+++.+++++|+++|++ ||+++|+||+|.++.+++.... . .....+++++++|+||.++++|+|
T Consensus 182 ~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~--~---~~~~~~~~i~~~s~sK~~~~~G~r 256 (398)
T 3ele_A 182 NNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVP--F---VTKYYDNTLVCYSYSKSLSLPGER 256 (398)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCC--C---GGGTCSSEEEEEESTTTSSCTTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcC--C---hHhhcCCeEEEEehhhcCCCccce
Confidence 9999999999999999999999 9999999999999988642111 1 123456889999999999999999
Q ss_pred cceeEEeecChhhHH--HHHHHHhhhhhc-ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015435 262 VGALSIVCKTEDVAS--RVESQLKLVIRP-MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA 338 (407)
Q Consensus 262 ~G~~~~v~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 338 (407)
+||+ +++++ +.+ .+...+...... .+.+++.+.+.++..++++.. .+++++++++++.+.|++
T Consensus 257 ~G~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----------~~~~~~~~~~~l~~~L~~ 322 (398)
T 3ele_A 257 IGYV--LVPDE-VYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-----------DINAYKENRDLLYEGLTR 322 (398)
T ss_dssp CEEE--ECCTT-STTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-----------CHHHHHHHHHHHHHHHHH
T ss_pred eEEE--EEcch-hhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHHH
Confidence 9999 56643 211 233333333222 244677788888877776542 246677888999999988
Q ss_pred cCCCCCcccccCCceeEEecCC---CHHHHHHhHhhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435 339 RGTPGDWSHIIKQIGMFTFTGL---NSEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
.+ +.+..+.+++|.|+.+ +.+.+.+.|.++||.+.+|. ||+++. +++++++++++|+++++++
T Consensus 323 ~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~~ 396 (398)
T 3ele_A 323 IG----YHCFKPDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYCV-DREMIKHSMPAFEKIYKKY 396 (398)
T ss_dssp HT----CCEECCSBSSEEEEECSSSCHHHHHHHHHTTTEECEESGGGTCTTEEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred cC----CeecCCCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCccccCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence 87 6778888999888855 45556566777999998862 999984 8899999999999999865
No 31
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=100.00 E-value=6e-42 Score=329.94 Aligned_cols=371 Identities=14% Similarity=0.171 Sum_probs=278.8
Q ss_pred ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHH----------HHHhccccccccCCCCC
Q 015435 6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAE----------QLLVNDQSRVKEYLPIV 75 (407)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~y~~~~ 75 (407)
+.+|+...+++++..+.....+. .+++|+|+.|.| +....|........ ... ....+|.+..
T Consensus 7 ~s~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~G~p---~~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~ 78 (425)
T 2r2n_A 7 ITAASAARNPSPIRTMTDILSRG-PKSMISLAGGLP---NPNMFPFKTAVITVENGKTIQFGEEMM----KRALQYSPSA 78 (425)
T ss_dssp SCHHHHTCCCCSGGGHHHHHHHS-CTTCEECCCCCC---CGGGCSEEEEEEEETTSCCEEECHHHH----HHHTSCCCTT
T ss_pred HHHHHhcCCCchHHHHHHHhhcC-CCCeEEcCCcCC---CchhCCHHHHHHHHhhcccccccccch----hhhcCCCCCC
Confidence 56777778888888877655542 367999999987 32122321111000 011 1134699999
Q ss_pred CcHHHHHHHHHHHhCCCCCCCC-------CCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCc
Q 015435 76 GLVDFNKLSAKLILGADSPAIK-------DNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL 148 (407)
Q Consensus 76 g~~~l~~~~a~~~~~~~~~~~~-------~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~ 148 (407)
|++++|+++++++...++...+ +++|++ |+|+++++.+++.. .+.+||+|++++|+|..+...++..|.
T Consensus 79 G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~--t~G~~~al~~~~~~--l~~~gd~Vlv~~p~y~~~~~~~~~~g~ 154 (425)
T 2r2n_A 79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCV--TSGSQQGLCKVFEM--IINPGDNVLLDEPAYSGTLQSLHPLGC 154 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEE--ESSHHHHHHHHHHH--HCCTTCEEEEESSCCHHHHHHHGGGTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEE--eCcHHHHHHHHHHH--hCCCCCEEEEeCCCcHHHHHHHHHcCC
Confidence 9999999999998443343332 268999 99999999999544 377999999999999999999999999
Q ss_pred eeeEEEeecCCCCCcChhhHHHHHHcC----------CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecc
Q 015435 149 SVKTYRYYDPATRGLNFQGLLEDLRAA----------PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDS 218 (407)
Q Consensus 149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~----------~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~ 218 (407)
+++.+|++ + .++|++++++.+.+. +++++++++++||||||.+++.+++++|+++|++||++||+||
T Consensus 155 ~~~~v~~~-~--~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De 231 (425)
T 2r2n_A 155 NIINVASD-E--SGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDD 231 (425)
T ss_dssp EEEEECEE-T--TEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEeCcC-C--CCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 99999984 3 369999999998631 3467777768999999999999999999999999999999999
Q ss_pred ccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHH
Q 015435 219 AYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGA 298 (407)
Q Consensus 219 ~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (407)
+|.++.+++.. ..++..+ +..+++++++||||.++ +|+|+||+ +++ +.+.+.+.........+++.++|
T Consensus 232 ~~~~~~~~g~~--~~~~~~~-~~~~~~i~~~s~SK~~~-~GlRiG~~--~~~-----~~l~~~l~~~~~~~~~~~~~~~q 300 (425)
T 2r2n_A 232 PYYFLQFNKFR--VPTFLSM-DVDGRVIRADSFSKIIS-SGLRIGFL--TGP-----KPLIERVILHIQVSTLHPSTFNQ 300 (425)
T ss_dssp TTGGGBSSSSC--CCCTGGG-CTTSCEEEEEESTTTTC-STTCCEEE--EEE-----HHHHHHHHHHHHTTTCSSCHHHH
T ss_pred CcccccCCCCC--CCCcccc-CCCCCEEEEccchhhcc-CccceEEE--ecC-----HHHHHHHHHHHHHhcCCCCHHHH
Confidence 99998876421 1122222 22467899999999999 99999999 576 44555555555555568899999
Q ss_pred HHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCc-ccccCCceeEEecCC----C-HHHHHHhHhh
Q 015435 299 SIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR-GTPGDW-SHIIKQIGMFTFTGL----N-SEQVAFMTKE 371 (407)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~-~~~~~~~~~~~~~~~----~-~~~~~~~l~~ 371 (407)
.++..++++.. .+.|.+++++++++++++++++.+.|++. +. + .+..|.+|+|.|+.+ + .+++.+.+.+
T Consensus 301 ~a~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~ 376 (425)
T 2r2n_A 301 LMISQLLHEWG-EEGFMAHVDRVIDFYSNQKDAILAAADKWLTG---LAEWHVPAAGMFLWIKVKGINDVKELIEEKAVK 376 (425)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS---SEEECCCSBSSEEEEEETTCSCCHHHHHTHHHH
T ss_pred HHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHH
Confidence 99988887521 12345678889999999999999999874 21 4 456778999999854 2 3445666777
Q ss_pred ccEEEcCC-----------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435 372 YHIYMTSD-----------G--RISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 372 ~gi~~~~g-----------g--Ris~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
+||.+.|| + ||+++..+++++++++++|+++++++
T Consensus 377 ~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 377 MGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp TTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999863 2 99988448899999999999998764
No 32
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=100.00 E-value=1.8e-41 Score=321.37 Aligned_cols=348 Identities=13% Similarity=0.072 Sum_probs=266.9
Q ss_pred CCCCchhhhhHhhhh--cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhC
Q 015435 13 APEDPILGVTVAYNK--DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILG 90 (407)
Q Consensus 13 ~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~ 90 (407)
.+++++++....++. .++ ++|||+.|.+ .. +.|+.+.+++.+.+ .....|++..|..++|+++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~g-~~i~l~~~~~---~~-~~~~~v~~a~~~~~----~~~~~y~~~~g~~~lr~~la~~l~~ 74 (376)
T 3ezs_A 4 FEPYPFERLRALLKEITPKK-RGLDLGIGEP---QF-ETPKFIQDALKNHT----HSLNIYPKSAFEESLRAAQRGFFKR 74 (376)
T ss_dssp CCCCHHHHHHHHHTTCCCSS-CCCBCSSCCC---CS-CCCHHHHHHHHTTG----GGGGSCCCTTCCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHhhhccC-CEEEeCCCCC---CC-CCCHHHHHHHHHhh----hhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 455666666655442 234 9999999984 22 44444444444333 2356798888999999999999954
Q ss_pred CCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC--CCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhH
Q 015435 91 ADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH--QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGL 168 (407)
Q Consensus 91 ~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~--gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l 168 (407)
..+..+++++|++ |+|+++++.++++. .+.+ ||+|+++.|+|..+...++..|.+++.+|++++ .++++ ++
T Consensus 75 ~~g~~~~~~~i~~--t~g~~~al~~~~~~--~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~-~l 147 (376)
T 3ezs_A 75 RFKIELKENELIS--TLGSREVLFNFPSF--VLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKE--NDFTP-SL 147 (376)
T ss_dssp HHSCCCCGGGEEE--ESSSHHHHHHHHHH--HTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGG--GTSCC-CC
T ss_pred HhCCCCCHHHEEE--CcCcHHHHHHHHHH--HcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCC--CCcch-hH
Confidence 3344446799999 99999999998543 3678 999999999999999999999999999998432 24555 66
Q ss_pred HHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH-----cCC
Q 015435 169 LEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA-----DGG 243 (407)
Q Consensus 169 ~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~-----~~~ 243 (407)
++.+. ++++++++ ++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..+...... ..+
T Consensus 148 ~~~~~--~~~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 221 (376)
T 3ezs_A 148 NEKEL--QEVDLVIL-NSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTP---PPSLLEACMLAGNEAFK 221 (376)
T ss_dssp CHHHH--HHCSEEEE-CSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC---CCCHHHHHHHTTCTTCT
T ss_pred Hhhhc--cCCCEEEE-cCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC---CCCHHHccccccccccC
Confidence 67776 45778777 79999999999999999999999999999999999999988652 222222222 467
Q ss_pred cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD 323 (407)
Q Consensus 244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (407)
+++++.|+||.+|++|+|+||+ +++ ++ +.+.+.........+++.+++.++..++++. +++++.++
T Consensus 222 ~~i~~~s~sK~~g~~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~ 287 (376)
T 3ezs_A 222 NVLVIHSLSKRSSAPGLRSGFI--AGD-SR----LLEKYKAFRAYLGYTSANAIQKASEAAWLDD-------RHAEFFRN 287 (376)
T ss_dssp TEEEEEESTTTTTCGGGCCEEE--EEC-HH----HHHHHHHHHTTTCCCCCHHHHHHHHHHHHCS-------HHHHHHHH
T ss_pred cEEEEecchhccCCccceeEEE--eeC-HH----HHHHHHHHHhhhcCCCChHHHHHHHHHHhCc-------HHHHHHHH
Confidence 8999999999999999999999 454 44 4555555555455678899999999888864 44778889
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-CHHH-HHHhHhhccEEEcCC----------C--eEEecCCCC
Q 015435 324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-NSEQ-VAFMTKEYHIYMTSD----------G--RISMAGLSS 389 (407)
Q Consensus 324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~l~~~gi~~~~g----------g--Ris~~~~~~ 389 (407)
+++++++++.+.|+ + +. .+.+++|.|+.+ +.+. ...+++++||.+.|| + ||+++. ++
T Consensus 288 ~~~~~~~~l~~~l~--~----~~--~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~-~~ 358 (376)
T 3ezs_A 288 IYANNLKLARKIFK--N----TL--IYPYSFYVYLPVQNGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY-DT 358 (376)
T ss_dssp HHHHHHHHHHHHST--T----CC--CCSBSSEEEEECSCHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS-CH
T ss_pred HHHHHHHHHHHHhc--C----CC--CCCcceEEEEECCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC-CH
Confidence 99999999999887 4 44 567888999877 3444 455555589999764 1 999986 89
Q ss_pred CChhHHHHHHHHHHHh
Q 015435 390 KTVPHLTDAIHAAVTR 405 (407)
Q Consensus 390 e~i~~~~~~l~~~l~~ 405 (407)
+++++++++|++++++
T Consensus 359 ~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 359 PLLEKPLEIIETYREN 374 (376)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998865
No 33
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=100.00 E-value=1.3e-41 Score=328.89 Aligned_cols=363 Identities=13% Similarity=0.104 Sum_probs=278.2
Q ss_pred CCchhhhhHh---hhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCC
Q 015435 15 EDPILGVTVA---YNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGA 91 (407)
Q Consensus 15 ~~~~~~~~~~---~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~ 91 (407)
.+++..+... +....++++|||+.|.+ .. +.++.+.+++.+.+. .....+|.+..|..++|+++++++...
T Consensus 25 ~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~lr~~la~~~~~~ 98 (437)
T 3g0t_A 25 MASIRDLVALVTNLEKATGTKFCRMEMGVP---GL-PAPQIGIETEIQKLR--EGVASIYPNLDGLPELKQEASRFAKLF 98 (437)
T ss_dssp GCCHHHHHHHHHHHHHHHTCCCEECCCCSC---CS-CCCHHHHHHHHHHHH--HTGGGSCCCTTCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcCCCEEeccCcCC---CC-CCCHHHHHHHHHHHh--CCcCcCCCCCCChHHHHHHHHHHHHHh
Confidence 3445444433 33345689999999985 22 556666666666664 222377988889999999999999544
Q ss_pred CCCCCCCCceEEeecCCcccHHHHHHHHHHhh--cCCC--eEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhh
Q 015435 92 DSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH--YHQL--TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQG 167 (407)
Q Consensus 92 ~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~--~~gd--~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~ 167 (407)
++..+++++|++ |+|+++++.+++..+ + .+|| +|+++.|+|.++...++..|.+++.++++ ++++.+|+++
T Consensus 99 ~g~~~~~~~i~~--t~g~t~al~~~~~~l--~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~ 173 (437)
T 3g0t_A 99 VNIDIPARACVP--TVGSMQGCFVSFLVA--NRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEKLREK 173 (437)
T ss_dssp HCCCCCGGGEEE--ESHHHHHHHHHHHHH--TTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTHHHHH
T ss_pred hCCCCCcccEEE--eCCHHHHHHHHHHHH--hcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCccCHHH
Confidence 444556789999 999999999995433 5 8999 99999999999999999999999999994 5566789999
Q ss_pred HHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh---HHH-HHHHHcCC
Q 015435 168 LLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA---QSV-RMFVADGG 243 (407)
Q Consensus 168 l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~---~~~-~~~~~~~~ 243 (407)
+++++.. ++++++++ ++||||||++++.+++++|+++|++||++||+|++|+.+.+++.. .. .++ ..+....+
T Consensus 174 l~~~l~~-~~~~~v~l-~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (437)
T 3g0t_A 174 LESYLQT-GQFCSIIY-SNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDY-SHPGEPLYQPSVANYTD 250 (437)
T ss_dssp HHHHHTT-TCCCEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCC-CSTTSSCCCCCGGGTCS
T ss_pred HHHHHhc-CCceEEEE-eCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCc-CcccccchhhccCCCCC
Confidence 9999932 45677777 899999999999999999999999999999999999988775211 11 000 11223367
Q ss_pred cEEEEEecCccccccCCCcceeEEeecChhhHHHHHH-H-----------------HhhhhhcccCCCChhHHHHHHHHh
Q 015435 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVES-Q-----------------LKLVIRPMYSSPPIHGASIVATIL 305 (407)
Q Consensus 244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~l 305 (407)
++++++|+||.++++|+|+||+ +++ +.+.. . +.........+++.+++.++..++
T Consensus 251 ~~i~~~s~sK~~~~~G~r~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 323 (437)
T 3g0t_A 251 NYILALSSSKAFSYAGQRIGVL--MIS-----GKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAML 323 (437)
T ss_dssp CEEEEEESTTTTSCGGGCCEEE--EEC-----HHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHH
T ss_pred cEEEEEcCccCCCCccceeEEE--EEC-----HHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHH
Confidence 8899999999999999999999 566 34454 4 554444455688899999999888
Q ss_pred cChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc------cC-CceeEEecCC---CHHHHHHhHhhccEE
Q 015435 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI------IK-QIGMFTFTGL---NSEQVAFMTKEYHIY 375 (407)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------~~-~~~~~~~~~~---~~~~~~~~l~~~gi~ 375 (407)
+... .|.+++++.+++++++++++.+.|++.+ +.+. .+ .+++|.|+.+ +.+.+.+.|.++||.
T Consensus 324 ~~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~ 396 (437)
T 3g0t_A 324 KACN---DGEYNFRDSVIEYGRKARIMKKMFLDNG----FNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRYGMC 396 (437)
T ss_dssp HHHH---TTSCCHHHHHHHHHHHHHHHHHHHHTTT----EEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHHTTEE
T ss_pred hCcH---hHHHHHHHHHHHHHHHHHHHHHHHHHcC----CEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHHcCeE
Confidence 7542 1112267888999999999999999886 6766 34 7888888744 566665555567999
Q ss_pred EcCC--------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435 376 MTSD--------G--RISMAGLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 376 ~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 405 (407)
+.++ + ||+++..+++++++++++|++++++
T Consensus 397 v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 397 AITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp CEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred EeeccccCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 9876 2 9999876889999999999998764
No 34
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=100.00 E-value=3.1e-41 Score=327.33 Aligned_cols=344 Identities=15% Similarity=0.170 Sum_probs=265.3
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc--cccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ--SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ 105 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~ 105 (407)
.+++++|||++|.+ +. +.++.+++++.+.+.... .....|.+..|.+++|+++++++. ++..+++++|++
T Consensus 66 ~~~~~~i~l~~g~~---~~-~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~-- 137 (449)
T 3qgu_A 66 NPDAKIISLGIGDT---TE-PLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFI-- 137 (449)
T ss_dssp CTTCCCEECSSCCC---CC-CCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEE--
T ss_pred CCCCCEEEeeCCCC---CC-CCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEE--
Confidence 34679999999964 33 666677777766664111 234579888999999999999995 555567789999
Q ss_pred cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCce----------eeEEEeecCCCCCcChhhHHHHHHcC
Q 015435 106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLS----------VKTYRYYDPATRGLNFQGLLEDLRAA 175 (407)
Q Consensus 106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~----------~~~v~~~~~~~~~~d~~~l~~~i~~~ 175 (407)
|+|+++++.++ ...+.+||+|++++|+|.++...++..|.+ ++.++++++.++..+++++
T Consensus 138 t~G~~~al~~~---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 207 (449)
T 3qgu_A 138 SDGSKCDIARI---QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA------- 207 (449)
T ss_dssp ESCHHHHHHHH---HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-------
T ss_pred ccCHHHHHHHH---HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-------
Confidence 99999999987 334689999999999999999999999998 9999985443444454432
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435 176 PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM 255 (407)
Q Consensus 176 ~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 255 (407)
++++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.. ..++..+....+.++++.||||.+
T Consensus 208 ~~~~~v~l-~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~--~~~~~~~~~~~~~~i~~~s~sK~~ 284 (449)
T 3qgu_A 208 KRTDIIFF-CSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDC--PKTIYEIPGADEVAIETCSFSKYA 284 (449)
T ss_dssp CCCSEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTS--CSSGGGSTTGGGTEEEEEECSGGG
T ss_pred CCCCEEEE-eCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCC--CCCHhhccCCCCcEEEEecchhhc
Confidence 46778777 699999999999999999999999999999999999999886421 222222222346789999999999
Q ss_pred cccCCCcceeEEeecChhhHHH----HHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 015435 256 GLYGERVGALSIVCKTEDVASR----VESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQ 331 (407)
Q Consensus 256 ~~~G~r~G~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (407)
|++|+|+||+ +++ +++.+. +...+.......+.+++.++|.++..++.+.. .+++++.++++++++++
T Consensus 285 g~~G~r~G~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~ 356 (449)
T 3qgu_A 285 GFTGVRLGWT--VVP-KALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG-----LKEMNAMIKFYKENAQI 356 (449)
T ss_dssp TCTTCCCEEE--ECC-TTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred CCccceeEEE--ecC-HHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC-----HHHHHHHHHHHHHHHHH
Confidence 9999999999 455 333221 11123333334455788999999998887532 15577888999999999
Q ss_pred HHHHHHhcCCCCCcccccCCceeEEecCC---CH-HHHHHhHhhccEEEcCC--------C--eEEecCCCCCChhHHHH
Q 015435 332 LFDALSARGTPGDWSHIIKQIGMFTFTGL---NS-EQVAFMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTD 397 (407)
Q Consensus 332 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~ 397 (407)
+.+.|++.| +.+..+.+++|.|+.+ +. +++..+++++||.+.|| + ||++.. ++++++++++
T Consensus 357 l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~-~~e~i~~~l~ 431 (449)
T 3qgu_A 357 LKTTFTEMG----FSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG-SRENILEAVR 431 (449)
T ss_dssp HHHHHHHTT----CCEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHH
T ss_pred HHHHHHHCC----CeeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-CHHHHHHHHH
Confidence 999999987 7777888889999865 34 44567778789999875 2 899876 8899999999
Q ss_pred HHHHHHHh
Q 015435 398 AIHAAVTR 405 (407)
Q Consensus 398 ~l~~~l~~ 405 (407)
+|++++++
T Consensus 432 ~l~~~~~~ 439 (449)
T 3qgu_A 432 RFKEAYGK 439 (449)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99998854
No 35
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=100.00 E-value=1.5e-41 Score=327.55 Aligned_cols=346 Identities=15% Similarity=0.162 Sum_probs=261.6
Q ss_pred CCCeeeeeeeeeecCCCccccc--hhHHHH--HHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435 30 SPVKLNLGVGAYRTEEGKPLVL--NVVRKA--EQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ 105 (407)
Q Consensus 30 ~~~~i~l~~g~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~ 105 (407)
....|||+.|.| +....|. .+.+.. .+.+.+......+|++..|.+++|+++++++ + +++++|++
T Consensus 32 ~~~~i~~~~G~p---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~-~-----~~~~~i~~-- 100 (427)
T 3ppl_A 32 KNLKLDLTRGKP---SSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLL-G-----VPVEQVLA-- 100 (427)
T ss_dssp TCCCEECCCCSC---CHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHH-T-----SCGGGEEE--
T ss_pred CCceEecCCCCC---ChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHh-C-----CCcceEEE--
Confidence 457899999986 2212222 344333 2333211234578988899999999999999 3 34589999
Q ss_pred cCCcccHH--HHHHHHHHhhc--C----------CCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHH
Q 015435 106 CLSGTGSL--RVGAEFLARHY--H----------QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLED 171 (407)
Q Consensus 106 t~g~t~a~--~~~~~~~~~~~--~----------gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 171 (407)
|+|+++++ .+++..+ +. + ||+|++++|+|..+...++..|.+++.+|++ +. ++|+++++++
T Consensus 101 t~G~~~al~~~~~~~~l--~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~-~~--g~d~~~l~~~ 175 (427)
T 3ppl_A 101 GDASSLNIMFDVISWSY--IFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMN-ED--GPDMDAVEEL 175 (427)
T ss_dssp CSSCHHHHHHHHHHHHH--HHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEE-TT--EECHHHHHHH
T ss_pred eCCcHHHHHHHHHHHHH--hccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCC-CC--CCCHHHHHHH
Confidence 99999999 4664333 44 5 8999999999999999999999999999995 32 5999999999
Q ss_pred HHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHH-HHcCceeeeccccccccCCCCCchhHHHHHH---HHcCCcEEE
Q 015435 172 LRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLM-RSKGLLPFFDSAYQGFASGSLDADAQSVRMF---VADGGECLV 247 (407)
Q Consensus 172 i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~-~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~---~~~~~~~i~ 247 (407)
+. .+++++++++++||||||.+++.+++++|+++| ++||+++|+||+|.++.+.+......++..+ .+..+++++
T Consensus 176 l~-~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 254 (427)
T 3ppl_A 176 VK-NPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWA 254 (427)
T ss_dssp TT-STTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEE
T ss_pred Hh-cCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEE
Confidence 84 245677777678999999999999999999999 9999999999999997765432222222222 235678999
Q ss_pred EEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH
Q 015435 248 AQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIIS 327 (407)
Q Consensus 248 ~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 327 (407)
++||||. +++|+|+||+ +++ +.+...+.........+++.+.|.++..++++.. .+.+++++.++.+++
T Consensus 255 ~~S~SK~-~~~G~r~G~~--~~~-----~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~ 323 (427)
T 3ppl_A 255 FTSTSKI-TLAGAGVSFF--LTS-----AENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAE---GVRAVMRKHAASLAP 323 (427)
T ss_dssp EEESTTT-SCTTSSCEEE--ECC-----HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHH---HHHHHHHHHHHHHHH
T ss_pred Eechhhc-cCcCccEEEE--EcC-----HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChh---hHHHHHHHHHHHHHH
Confidence 9999999 6799999999 565 4455555555555566889999999999998732 234556777788888
Q ss_pred HHHHHHHHHHh----cCCCCCcccccCCceeEEecCC---CHHHHHHhHhhccEEEcCC----------C----eEEecC
Q 015435 328 MRQQLFDALSA----RGTPGDWSHIIKQIGMFTFTGL---NSEQVAFMTKEYHIYMTSD----------G----RISMAG 386 (407)
Q Consensus 328 ~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~g----------g----Ris~~~ 386 (407)
+++.+.+.|.+ .+. +.+..|.+|+|.|+.+ +.+.+.+.|.++||.+.|+ + ||+++.
T Consensus 324 ~~~~l~~~L~~~l~~~~~---~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~ 400 (427)
T 3ppl_A 324 KFNKVLEILDSRLAEYGV---AQWTVPAGGYFISLDVVPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSL 400 (427)
T ss_dssp HHHHHHHHHHHHHGGGTC---CEECCCSBSSCEEEECSTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS
T ss_pred HHHHHHHHHHHhcCCCCc---eEEeCCCccEEEEEECCcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCC
Confidence 88877777754 222 5667788999999866 3566667777899999983 1 999986
Q ss_pred CCCCChhHHHHHHHHHHHhh
Q 015435 387 LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 387 ~~~e~i~~~~~~l~~~l~~~ 406 (407)
.+++++++++++|++++++.
T Consensus 401 ~~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 401 PPVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 67799999999999998753
No 36
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=100.00 E-value=6e-41 Score=323.55 Aligned_cols=353 Identities=20% Similarity=0.312 Sum_probs=269.3
Q ss_pred CCCeeeeeeeeeecCCCccccchh--HHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCc---eEEe
Q 015435 30 SPVKLNLGVGAYRTEEGKPLVLNV--VRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNR---VTTV 104 (407)
Q Consensus 30 ~~~~i~l~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~---i~~~ 104 (407)
.+++|||+.|.+. +.+ .++.+ ++++.+.+. .....+|++..|..++|+++++++...+ ..+++++ |++
T Consensus 46 ~~~~i~l~~g~~~-~~~--~~~~~~~~~a~~~~~~--~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~- 118 (430)
T 2x5f_A 46 KSTTYNATIGMAT-NKD--GKMFASSLDAMFNDLT--PDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIV- 118 (430)
T ss_dssp TTCSEECCCSSCE-ETT--EECCCHHHHTTBSSCC--GGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEE-
T ss_pred CCCcEEeeeeecc-CCC--CchhhHHHHHHHHhcC--cccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEE-
Confidence 3689999999752 123 23333 554444432 1135679888899999999999995432 3455678 999
Q ss_pred ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhh-cCceeeEEEeecCCCCCcChhhHHHHHHcCC-CCcEEE
Q 015435 105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTL-AGLSVKTYRYYDPATRGLNFQGLLEDLRAAP-SGAIVL 182 (407)
Q Consensus 105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~-~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~-~~~~v~ 182 (407)
|+|+++++.+++.. .+.+||+|+++.|+|.++...++. .|.+++.+++.++ ++++|++++++.+.+.+ ++++++
T Consensus 119 -t~g~~~al~~~~~~--l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~~~~v~ 194 (430)
T 2x5f_A 119 -TNALTHGLSLVGDL--FVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDK-DGHYTTDSLVEALQSYNKDKVIMI 194 (430)
T ss_dssp -ESHHHHHHHHHHHH--HCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCT-TSCBCSHHHHHHHHHCCSSEEEEE
T ss_pred -cCCchHHHHHHHHH--HhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCc-cCCcCHHHHHHHHHhcCCCCEEEE
Confidence 99999999999543 367999999999999999999999 9999999998432 36899999999997432 345555
Q ss_pred EecCCCCCCCCCCCHHHHHHHHHHHHH-----cCceeeeccccccccCCCCCchhHHHH-HHHHcCCc---EEEEEecCc
Q 015435 183 LHACAHNPTGVDPTLEQWEQIRQLMRS-----KGLLPFFDSAYQGFASGSLDADAQSVR-MFVADGGE---CLVAQSYAK 253 (407)
Q Consensus 183 i~~~p~NPtG~~~~~~~l~~i~~~~~~-----~~~~li~D~~y~~~~~~~~~~~~~~~~-~~~~~~~~---~i~~~s~sK 253 (407)
+ ++||||||.+++.+++++|+++|++ ||+++|+||+|.++.+++.. ..++. .+....++ +++++|+||
T Consensus 195 i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~s~sK 271 (430)
T 2x5f_A 195 L-NYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVY--TQSLFTALTNLHSNAILPIRLDGATK 271 (430)
T ss_dssp E-CSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSC--CSCHHHHHHTTCCTTEEEEEEEEHHH
T ss_pred E-cCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCccc--chHHHHHHhhccCCcceEEEEEeccc
Confidence 5 8999999999999999999999999 99999999999999876421 12222 33333567 899999999
Q ss_pred cccccCCCcceeEEee--cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhc-ChhhHHhHHHHHHHHHHHHHHHHH
Q 015435 254 NMGLYGERVGALSIVC--KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK-DSTMYKEWTLELKAMADRIISMRQ 330 (407)
Q Consensus 254 ~~~~~G~r~G~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~ 330 (407)
.++++|+|+||+ ++ +++++.+.+........+..+.+++.++|.++..+++ +. .|.+.+++.+++++++++
T Consensus 272 ~~~~~G~riG~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~ 345 (430)
T 2x5f_A 272 EFFAWGFRVGFM--TFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNK----QFDKEIEQNIQTLKERYE 345 (430)
T ss_dssp HTTCGGGCCEEE--EEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCeEEE--EEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccCh----HHHHHHHHHHHHHHHHHH
Confidence 999999999999 46 3565555544322222222456889999999999998 75 244556778999999999
Q ss_pred HHHHHHH----hcCCCCCcccccCCceeEEecCC---CHHHH-HHhHhhccEEEcCCC----eEEecCCCCCChhHHHHH
Q 015435 331 QLFDALS----ARGTPGDWSHIIKQIGMFTFTGL---NSEQV-AFMTKEYHIYMTSDG----RISMAGLSSKTVPHLTDA 398 (407)
Q Consensus 331 ~l~~~l~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~l~~~gi~~~~gg----Ris~~~~~~e~i~~~~~~ 398 (407)
++.+.|+ +.+ +.+..+.+|+|.|+.+ +.+.+ ..+++++||.+.||+ ||+++..+++++++++++
T Consensus 346 ~l~~~L~~~~~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~~~~e~i~~~~~~ 421 (430)
T 2x5f_A 346 VTKEVVYADQYHSH----WQAYDFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDDIPHVFDS 421 (430)
T ss_dssp HHHHHHTCGGGTTT----EEECCCCBSSEEEEEESSSCHHHHHHHHHHHHCEECEECSSSEEEEEGGGSCGGGHHHHHHH
T ss_pred HHHHHHHhhCCCCC----ceeeCCCceEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCeEEEEEecCCHHHHHHHHHH
Confidence 9999998 444 7777888899888754 45544 455555899999974 999984488999999999
Q ss_pred HHHHHHhh
Q 015435 399 IHAAVTRM 406 (407)
Q Consensus 399 l~~~l~~~ 406 (407)
|+++++++
T Consensus 422 l~~~l~~~ 429 (430)
T 2x5f_A 422 IAKAIDDL 429 (430)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999865
No 37
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=2.7e-40 Score=316.64 Aligned_cols=373 Identities=16% Similarity=0.218 Sum_probs=276.2
Q ss_pred ccccccCCCCCchhhhhHhhhh--cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435 6 VFGKIVRAPEDPILGVTVAYNK--DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL 83 (407)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ 83 (407)
+..|+...+++++....+.... .++.++|||+.|.+. ..+ ..++.+.+++.+.+.+...... |++..|..++|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~-~~~-~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~ 83 (407)
T 2zc0_A 7 LAGRANWIKGSALADVMKKASELQKKGVKLISLAAGDPD-PEL-IPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREE 83 (407)
T ss_dssp SCGGGGGCCCCHHHHHHHHHHHHHHSSCCCEECCSCCCC-TTT-SCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHH
T ss_pred hhhhhccCCchHHHHHHHhhhcccCCCCceEeCCCCCCC-chh-CCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHH
Confidence 4566666666666666554442 334589999999861 222 2234455555555541111235 8888899999999
Q ss_pred HHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435 84 SAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL 163 (407)
Q Consensus 84 ~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~ 163 (407)
+++++....+..+++++|++ |+|+++++.+++..+ +.+||+|+++.|+|.++...++..|.+++.+|.+ ++ ++
T Consensus 84 la~~~~~~~g~~~~~~~v~~--t~g~t~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~--~~ 156 (407)
T 2zc0_A 84 LAAFLKKYDHLEVSPENIVI--TIGGTGALDLLGRVL--IDPGDVVITENPSYINTLLAFEQLGAKIEGVPVD-ND--GM 156 (407)
T ss_dssp HHHHHHHHSCCCCCGGGEEE--ESHHHHHHHHHHHHH--CCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEE-TT--EE
T ss_pred HHHHHHHhcCCCCCcceEEE--ecCHHHHHHHHHHHh--cCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccC-CC--CC
Confidence 99999433333345689999 999999999995443 6799999999999999999999999999999984 32 49
Q ss_pred ChhhHHHHHH----cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH
Q 015435 164 NFQGLLEDLR----AAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV 239 (407)
Q Consensus 164 d~~~l~~~i~----~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~ 239 (407)
|++++++.+. +.+++++++++++|+||||.+++.+++++|+++|++||+++|+|++|..+.+++.. ..++..+
T Consensus 157 d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~~- 233 (407)
T 2zc0_A 157 RVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGD--IVPLKAL- 233 (407)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSS--CCCGGGG-
T ss_pred CHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCC--CCChhhc-
Confidence 9999999987 43345666666999999999999999999999999999999999999998875421 1122112
Q ss_pred HcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHH-HHH
Q 015435 240 ADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWT-LEL 318 (407)
Q Consensus 240 ~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~ 318 (407)
+..+++++++|+||.++ +|+|+||+ +++ ++ +.+.+.........+++.+.+.++..+++... +. +++
T Consensus 234 ~~~~~~i~~~s~sK~~~-~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~ 301 (407)
T 2zc0_A 234 DNEGRVIVAGTLSKVLG-TGFRIGWI--IAE-GE----ILKKVLMQKQPIDFCAPAISQYIALEYLKRGY----FEKYHL 301 (407)
T ss_dssp CSSCCEEEEEESTTTTC-TTSCCEEE--ECC-HH----HHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTH----HHHHTT
T ss_pred CCCCCEEEEcccccccC-CCcceEEE--ecC-HH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCC----chHHHH
Confidence 22357899999999999 99999999 565 44 44444444444445678889999988887652 33 456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCCCcccccCCceeEEecCC----CHHHH-HHhHhhccEEEcCC--------C----
Q 015435 319 KAMADRIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFTFTGL----NSEQV-AFMTKEYHIYMTSD--------G---- 380 (407)
Q Consensus 319 ~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~l~~~gi~~~~g--------g---- 380 (407)
++.+++++++++++.+.|++. +. +.+..+.+++|.|+.+ +.+.+ ..+++++||.+.+| +
T Consensus 302 ~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~i 378 (407)
T 2zc0_A 302 EGALLGYKEKRDIMLKALENHLPN---AEFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAI 378 (407)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHCTT---SCBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC---CEEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeE
Confidence 778888999999999999874 32 5666677888888755 44444 45555459999874 2
Q ss_pred eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435 381 RISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 381 Ris~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
||+++..+++++++++++|+++++++
T Consensus 379 Ris~~~~~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 379 RLNFSRPSKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp EEECSSSCTTHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 99998656899999999999998754
No 38
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=4.8e-41 Score=324.15 Aligned_cols=367 Identities=13% Similarity=0.078 Sum_probs=272.2
Q ss_pred cccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHH
Q 015435 7 FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAK 86 (407)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~ 86 (407)
..|+...++..+ ........ ..++|||+.|.+ +. +.++.+.+++.+.+.........|++..|..++++++++
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~~--~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~ 88 (429)
T 1yiz_A 16 PKRYQGSTKSVW-VEYIQLAA--QYKPLNLGQGFP---DY-HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSK 88 (429)
T ss_dssp SSSCCCCTTCHH-HHHHHHHH--HHCCEECCSSSC---SS-CCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHH
T ss_pred hHHhhhCCchHH-HHHHHHhc--cCCEEEecCCCC---CC-CCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHH
Confidence 355555554443 33322222 247999999975 22 335566666666664111134678877899999999999
Q ss_pred HHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCC------
Q 015435 87 LILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPA------ 159 (407)
Q Consensus 87 ~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~------ 159 (407)
++....+..++++ +|++ |+|+++++.++++.+ +.+||+|+++.|+|..+...++..|.+++.+|+..+.
T Consensus 89 ~l~~~~g~~~~~~~~v~~--~~g~~~a~~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 164 (429)
T 1yiz_A 89 LYSQLVDRTINPMTEVLV--TVGAYEALYATIQGH--VDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTIS 164 (429)
T ss_dssp HHHHHHTSCCCTTTSEEE--ESHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEE
T ss_pred HHHHHhCCCCCCcCCEEE--ecChHHHHHHHHHHh--cCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCccccccccc
Confidence 9843223334567 9999 999999999995443 6799999999999999999999999999999985321
Q ss_pred --CCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHH
Q 015435 160 --TRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM 237 (407)
Q Consensus 160 --~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~ 237 (407)
++.+|++++++.+. ++++++++ ++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++.. ..++..
T Consensus 165 ~~~~~~d~~~l~~~l~--~~~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~ 239 (429)
T 1yiz_A 165 SADWVLDNNELEALFN--EKTKMIII-NTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFE--HIRICT 239 (429)
T ss_dssp GGGCBCCHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSC--CCCGGG
T ss_pred ccCcccCHHHHHHHhc--cCceEEEE-CCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCC--CcChhh
Confidence 46789999999886 55667666 799999999999999999999999999999999999998875421 112211
Q ss_pred HHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC-----hhhHH
Q 015435 238 FVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD-----STMYK 312 (407)
Q Consensus 238 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~ 312 (407)
+....+.++++.|+||.++++|+|+||+ +++ ++ +.+.+........++++.+.|.++..+++. ..
T Consensus 240 ~~~~~~~~~~~~s~sK~~~~~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~--- 309 (429)
T 1yiz_A 240 LPGMWERTITIGSAGKTFSLTGWKIGWA--YGP-EA----LLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKS--- 309 (429)
T ss_dssp STTTGGGEEEEEEHHHHHTCGGGCCEEE--ESC-HH----HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTS---
T ss_pred ccCCcCceEEEecchhccCCCCcceEEE--EeC-HH----HHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccc---
Confidence 2123457899999999999999999999 565 44 444444444444557888889888888875 21
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC----------------HH-HHHHhHhhccEE
Q 015435 313 EWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN----------------SE-QVAFMTKEYHIY 375 (407)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~-~~~~~l~~~gi~ 375 (407)
+.+++++.+++++++++++.+.|++.+ +.+..+.+|+|.|+.+. .. +..++++++||.
T Consensus 310 -~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~ 384 (429)
T 1yiz_A 310 -PECYFNSISGELMAKRDYMASFLAEVG----MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQ 384 (429)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHT----CEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEE
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEE
Confidence 124577888999999999999999886 67777778888887542 22 344566678999
Q ss_pred EcCC-------------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435 376 MTSD-------------G--RISMAGLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 376 ~~~g-------------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 405 (407)
+.|| + ||+++. +++++++++++|+++++.
T Consensus 385 v~~g~~f~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 385 GIPPSAFYSEPNKHLGEDFVRYCFFK-KDENLQKAAEILRKWKGS 428 (429)
T ss_dssp CBCGGGGSCGGGGGGTTTEEEEECCS-CHHHHHHHHHHHHHHSCC
T ss_pred EeCchHhCCCcccCCCCCeEEEEecC-CHHHHHHHHHHHHHhccC
Confidence 9763 2 999986 889999999999988653
No 39
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=100.00 E-value=6.3e-41 Score=318.82 Aligned_cols=357 Identities=15% Similarity=0.159 Sum_probs=268.0
Q ss_pred cccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHH
Q 015435 7 FGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAK 86 (407)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~ 86 (407)
..|+...+++.+.. ...+... .++|||+.|.+ +. +.++.+.+++.+.+. . ....|.+..|..++|+++++
T Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~--~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~-~~~~y~~~~g~~~l~~~la~ 78 (386)
T 1u08_A 9 QSKLPQLGTTIFTQ-MSALAQQ--HQAINLSQGFP---DF-DGPRYLQERLAHHVA--Q-GANQYAPMTGVQALREAIAQ 78 (386)
T ss_dssp CCSCCCCCCCHHHH-HHHHHHH--TTCEECCCSSC---SS-CCCHHHHHHHHHHHH--T-TCCSCCCTTCCHHHHHHHHH
T ss_pred chhhhcCCccHHHH-HHHHHhc--CCeEEecCCCC---CC-CCCHHHHHHHHHHHH--h-hccCCCCCCCCHHHHHHHHH
Confidence 45666655554433 3333322 57999999975 22 334556666556554 2 24578877899999999999
Q ss_pred HHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcCh
Q 015435 87 LILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNF 165 (407)
Q Consensus 87 ~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~ 165 (407)
++....+..++++ +|++ |+|+++++.++++.+ +.+||+|++++|+|+.+...++..|.+++.++.+ ++++.+|+
T Consensus 79 ~l~~~~g~~~~~~~~v~~--~~g~~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~ 153 (386)
T 1u08_A 79 KTERLYGYQPDADSDITV--TAGATEALYAAITAL--VRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQ-PPHFRVDW 153 (386)
T ss_dssp HHHHHHSCCCCTTTTEEE--ESSHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECC-TTTCCCCH
T ss_pred HHHHHhCCCCCCCCCEEE--cCChHHHHHHHHHHh--CCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecC-cccCcCCH
Confidence 9833223334567 9999 999999999995443 6799999999999999999999999999999984 33578999
Q ss_pred hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435 166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245 (407)
Q Consensus 166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (407)
+++++.+. ++++++++ ++|+||||.+++.+++++|+++|++||+++|+||+|..+.+++... .++..+....+++
T Consensus 154 ~~l~~~l~--~~~~~v~l-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~--~~~~~~~~~~~~~ 228 (386)
T 1u08_A 154 QEFAALLS--ERTRLVIL-NTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGH--ASVLAHPQLRERA 228 (386)
T ss_dssp HHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCC--CCGGGSHHHHTTE
T ss_pred HHHHHhhc--ccCEEEEE-eCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCC--cChhcccCccCcE
Confidence 99999986 55667666 7999999999999999999999999999999999999988754211 1111111124679
Q ss_pred EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI 325 (407)
Q Consensus 246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 325 (407)
+++.|+||.++++|+|+||+ +++ ++ +.+.+........++++.+.+.++..+++... +++++.++++
T Consensus 229 i~~~s~sK~~~~~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~ 295 (386)
T 1u08_A 229 VAVSSFGKTYHMTGWKVGYC--VAP-AP----ISAEIRKVHQYLTFSVNTPAQLALADMLRAEP------EHYLALPDFY 295 (386)
T ss_dssp EEEEEHHHHTTCGGGCCEEE--ECC-HH----HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCT------HHHHTHHHHH
T ss_pred EEEecchhhcCCcccceEEE--EcC-HH----HHHHHHHHHHhhccCCChHHHHHHHHHHhCCc------HHHHHHHHHH
Confidence 99999999999999999999 565 44 44444444433345778888888888886432 4577888999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC------CHHHH-HHhHhhccEEEcCC--------C----eEEecC
Q 015435 326 ISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL------NSEQV-AFMTKEYHIYMTSD--------G----RISMAG 386 (407)
Q Consensus 326 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~l~~~gi~~~~g--------g----Ris~~~ 386 (407)
+++++++.+.|++.+ +.+..+.+++|.|+.+ +.+.+ ..+++++||.+.|| + ||+++.
T Consensus 296 ~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~ 371 (386)
T 1u08_A 296 RQKRDILVNALNESR----LEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK 371 (386)
T ss_dssp HHHHHHHHHHTTSSS----CEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS
T ss_pred HHHHHHHHHHHHHCC----CeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC
Confidence 999999999998876 6777778888888744 34444 45666789999764 2 999986
Q ss_pred CCCCChhHHHHHHHH
Q 015435 387 LSSKTVPHLTDAIHA 401 (407)
Q Consensus 387 ~~~e~i~~~~~~l~~ 401 (407)
+++++++++++|++
T Consensus 372 -~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 372 -KESTLLAAAERLRQ 385 (386)
T ss_dssp -CHHHHHHHHHHHTT
T ss_pred -CHHHHHHHHHHHhh
Confidence 88899999998864
No 40
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=100.00 E-value=6e-41 Score=322.17 Aligned_cols=373 Identities=16% Similarity=0.186 Sum_probs=276.6
Q ss_pred CCCCCchhhhhHhhhh-cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhC
Q 015435 12 RAPEDPILGVTVAYNK-DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILG 90 (407)
Q Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~ 90 (407)
....+++....+.+.. ...+++|+|+.|.|......+.++.+.+++.+.+. .....+|++..|..++|+++++++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~--~~~~~~y~~~~~~~~lr~~la~~~~~ 90 (416)
T 1bw0_A 13 GLVFNPIRTVSDNAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAID--SQECNGYFPTVGSPEAREAVATWWRN 90 (416)
T ss_dssp HTCCCHHHHHHHTCCCCCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHH--TTCSSSCCCTTCCHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHhhcCCCeEEecCcCCCcccCCCCCHHHHHHHHHHhh--CCccCCcCCCCCCHHHHHHHHHHHHh
Confidence 3444456655554432 22367999999986210122556666666666665 22346788778999999999999951
Q ss_pred ------CCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435 91 ------ADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN 164 (407)
Q Consensus 91 ------~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d 164 (407)
..+..+++++|++ |+|+++++.+++..+ +.+||+|++++|+|..+...++..|.+++.+++..+.++.+|
T Consensus 91 ~~~~~~~~~~~~~~~~v~~--~~g~~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 166 (416)
T 1bw0_A 91 SFVHKEELKSTIVKDNVVL--CSGGSHGILMAITAI--CDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEAD 166 (416)
T ss_dssp HHCCSTTTGGGCCGGGEEE--ESHHHHHHHHHHHHH--CCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEEC
T ss_pred hhcccccCCCCCCcceEEE--eCChHHHHHHHHHHh--CCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCC
Confidence 3444456789999 999999999995443 679999999999999999999999999999998533356789
Q ss_pred hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc--hhHHHHHHHHcC
Q 015435 165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA--DAQSVRMFVADG 242 (407)
Q Consensus 165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~--~~~~~~~~~~~~ 242 (407)
++++++.+. ++++++++ ++|+||||.+++.+++++|+++|++||++||+||+|.++.+++... ...++..+ ...
T Consensus 167 ~~~l~~~l~--~~~~~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~-~~~ 242 (416)
T 1bw0_A 167 LDEIRRLKD--DKTKLLIV-TNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADF-ETT 242 (416)
T ss_dssp HHHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSS-CCS
T ss_pred HHHHHHHhc--cCCeEEEE-eCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHc-cCC
Confidence 999999886 45566666 7899999999999999999999999999999999999988764200 11111111 223
Q ss_pred CcEEEEEecCccccccCCCcceeEEeecCh-hhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435 243 GECLVAQSYAKNMGLYGERVGALSIVCKTE-DVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM 321 (407)
Q Consensus 243 ~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 321 (407)
.++++++|+||.++++|+|+||+ +++++ ++.+.+...+..... ...+++.++|.++..+++... ..++++.
T Consensus 243 ~~~i~~~s~sK~~~~~Glr~G~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~ 314 (416)
T 1bw0_A 243 VPRVILGGTAKNLVVPGWRLGWL--LYVDPHGNGPSFLEGLKRVGM-LVCGPCTVVQAALGEALLNTP-----QEHLDQI 314 (416)
T ss_dssp CCEEEEEESTTTTSCGGGCCEEE--EEECTTCSCHHHHHHHHHHHH-HHTCSCHHHHHHHHHHHHSSC-----HHHHHHH
T ss_pred CcEEEEecchhhCCCCCceEEEE--EeeCchhhHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHhccc-----HHHHHHH
Confidence 46899999999999999999999 67765 455555544433221 234778889999988887532 1457778
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC---------CHHH-HHHhHhhccEEEcCC------C--eEE
Q 015435 322 ADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL---------NSEQ-VAFMTKEYHIYMTSD------G--RIS 383 (407)
Q Consensus 322 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~l~~~gi~~~~g------g--Ris 383 (407)
+++++++++++.+.|++.+. +.+..+.+++|.|+.+ +... ...+++++||.+.+| + ||+
T Consensus 315 ~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis 391 (416)
T 1bw0_A 315 VAKIEESAMYLYNHIGECIG---LAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLT 391 (416)
T ss_dssp HHHHHHHHHHHHHHHTTSTT---EEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCC---CcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEE
Confidence 88999999999999988732 6666677788887643 3444 455667799999885 2 999
Q ss_pred ecCCCCCChhHHHHHHHHHHHhh
Q 015435 384 MAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 384 ~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
++. +++++++++++|.+++++.
T Consensus 392 ~~~-~~e~l~~~l~~l~~~l~~~ 413 (416)
T 1bw0_A 392 TTR-PVEVYREAVERIKAFCQRH 413 (416)
T ss_dssp CCS-CHHHHHHHHHHHHHHHHHH
T ss_pred ecC-CHHHHHHHHHHHHHHHHHh
Confidence 974 8889999999999998764
No 41
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=3.1e-41 Score=325.02 Aligned_cols=371 Identities=12% Similarity=0.130 Sum_probs=271.4
Q ss_pred ccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHH
Q 015435 8 GKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKL 87 (407)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~ 87 (407)
.++...+++++.++.... .++++|||+.|.+. ..+ ..++.+.+++.+.+........+|.+..|..++|++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~---~~~~~idl~~g~~~-~~~-~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~ 97 (425)
T 1vp4_A 23 KIGQNMKSSIIREILKFA---ADKDAISFGGGVPD-PET-FPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKL 97 (425)
T ss_dssp HHHHTCCCCCHHHHTTTT---TSTTCEECCCCSCC-GGG-SCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHH
T ss_pred hhhhcCCCcHHHHHHHhc---cCCCceeCCCCCCC-ccc-CCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHH
Confidence 344445555555444322 34689999999861 122 2234455555555541111246788888999999999999
Q ss_pred HhCCCCCC-CCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChh
Q 015435 88 ILGADSPA-IKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQ 166 (407)
Q Consensus 88 ~~~~~~~~-~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~ 166 (407)
+....+.. +++++|++ |+|+++++.+++. ..+.+||+|+++.|+|.++...++..|.+++.+|.+ ++ ++|++
T Consensus 98 l~~~~g~~~~~~~~v~~--t~G~~~al~~~~~--~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~-~~--~~d~~ 170 (425)
T 1vp4_A 98 LERMYGITGLDEDNLIF--TVGSQQALDLIGK--LFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLE-DD--GMDLN 170 (425)
T ss_dssp HHHHHCCCSCCGGGEEE--EEHHHHHHHHHHH--HHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEE-TT--EECHH
T ss_pred HHhccCCCCCCcccEEE--eccHHHHHHHHHH--HhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccC-CC--CCCHH
Confidence 94322333 45689999 9999999999853 336799999999999999999999999999999984 32 59999
Q ss_pred hHHHHHHc------CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435 167 GLLEDLRA------APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA 240 (407)
Q Consensus 167 ~l~~~i~~------~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~ 240 (407)
++++.+.+ .+++++++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++.. ..++..+ .
T Consensus 171 ~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~-~ 247 (425)
T 1vp4_A 171 VLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGET--VDPIFKI-G 247 (425)
T ss_dssp HHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCC--CCCHHHH-H
T ss_pred HHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCC--CcCHHHh-C
Confidence 99999873 1245666556999999999999999999999999999999999999999875431 1233333 2
Q ss_pred cCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHH
Q 015435 241 DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKA 320 (407)
Q Consensus 241 ~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 320 (407)
..+++++++|+||.++ +|+|+||+ +++ ++ +.+.+.........+++.++|.++..++++.. +.+++++
T Consensus 248 ~~~~~i~~~s~sK~~~-~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~ 315 (425)
T 1vp4_A 248 GPERVVLLNTFSKVLA-PGLRIGMV--AGS-KE----FIRKIVQAKQSADLCSPAITHRLAARYLERYD----LLEQLKP 315 (425)
T ss_dssp CTTTEEEEEESTTTTC-GGGCEEEE--ECC-HH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSC----HHHHTHH
T ss_pred CCCCEEEEeccccccc-cccceEEE--eeC-HH----HHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCC----HHHHHHH
Confidence 3467899999999999 99999999 565 44 44444444444445678889999988887541 3356788
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCCCcccccCCceeEEecCC----CHH-HHHHhHhhccEEEcCC----------C--eE
Q 015435 321 MADRIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFTFTGL----NSE-QVAFMTKEYHIYMTSD----------G--RI 382 (407)
Q Consensus 321 ~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~l~~~gi~~~~g----------g--Ri 382 (407)
.+++++++++++.+.|++. +....+.+..+.+++|.|+.+ +.+ ....+++ +||.+.|| + ||
T Consensus 316 ~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~g~~f~~~~~~~~~iRi 394 (425)
T 1vp4_A 316 TIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKR-KKVFYVPGRVFKVYDEPSPSMRL 394 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHH-HTEECEEGGGGCTTCCCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCCCHHHHHHHHHH-CCCEEECchhhcCCCCCCCeEEE
Confidence 8899999999999999875 200016666677888888855 233 3455555 59999863 2 99
Q ss_pred EecCCCCCChhHHHHHHHHHHHhh
Q 015435 383 SMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 383 s~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
+++..+++++++++++|+++++++
T Consensus 395 s~~~~~~e~i~~~l~~l~~~l~~~ 418 (425)
T 1vp4_A 395 SFCLPPDEKIVEGIKRLREVVLEY 418 (425)
T ss_dssp ECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHH
Confidence 998656799999999999988653
No 42
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=2.9e-41 Score=320.05 Aligned_cols=338 Identities=14% Similarity=0.128 Sum_probs=258.3
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCC-ceEEeec
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDN-RVTTVQC 106 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~-~i~~~~t 106 (407)
.+++++|||+.|.+ .. +.++.+.+++.+.+. .....+|++..|..++|+++++++....+..++++ +|++ |
T Consensus 22 ~~g~~~idl~~~~~---~~-~~~~~v~~a~~~~~~--~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~--~ 93 (376)
T 2dou_A 22 ERGVGLIDLSIGST---DL-PPPEAPLKALAEALN--DPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALA--L 93 (376)
T ss_dssp HTTCCCEECSSCCC---CC-CCCHHHHHHHHHHTT--CGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEE--E
T ss_pred ccCCCEEeccCCCC---CC-CCCHHHHHHHHHHHh--CCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEE--c
Confidence 34678999999985 22 334555555555554 22356787667899999999999843323334445 9999 9
Q ss_pred CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecC
Q 015435 107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC 186 (407)
Q Consensus 107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~ 186 (407)
+|+++++.++++. .+.+||+|+++.|+|.++...++..|.+++.+|. ++++.+|++++++.+. ++++++++ ++
T Consensus 94 ~g~~~a~~~~~~~--l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~--~~~~~v~l-~~ 166 (376)
T 2dou_A 94 IGSQEGLAHLLLA--LTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVW--REAKVLLL-NY 166 (376)
T ss_dssp SSHHHHHHHHHHH--HCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHH--HHEEEEEE-CS
T ss_pred CCcHHHHHHHHHH--hcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhc--cCceEEEE-CC
Confidence 9999999999543 3678999999999999999999999999999988 4556689999999886 45667666 78
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeE
Q 015435 187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALS 266 (407)
Q Consensus 187 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 266 (407)
|+||||.+++.+++++|+++|++||+++|+||+|.++.+++....... +....+++++++|+||.+|++|+|+||+
T Consensus 167 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~---~~~~~~~~i~~~s~sK~~~~~G~r~G~~- 242 (376)
T 2dou_A 167 PNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLA---LPGAKERVVELFSLSKSYNLAGFRLGFA- 242 (376)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGG---STTGGGTEEEEEEHHHHHTCGGGCCEEE-
T ss_pred CCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhh---cCCCCCcEEEEecchhhcCChhheeEEE-
Confidence 999999999999999999999999999999999999987542111111 1122457899999999999999999999
Q ss_pred EeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 015435 267 IVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS 346 (407)
Q Consensus 267 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 346 (407)
+++ ++ +.+.+.........+++.+++.++..++++.. +++++.+++++++++++.+.|++. +.
T Consensus 243 -~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~-----~~ 305 (376)
T 2dou_A 243 -LGS-EE----ALARLERVKGVIDFNQYAGVLRMGVEALKTPK------EVVRGYARVYRERALGMAEALKGV-----LS 305 (376)
T ss_dssp -EEC-HH----HHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCH------HHHHHHHHHHHHHHHHHHHHHTTT-----SE
T ss_pred -ecC-HH----HHHHHHHHHHhcccCCCHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHHHh-----cC
Confidence 555 44 44444444444455778889999998888632 557788899999999999999775 35
Q ss_pred cccCCceeEEecCC----CHHH-HHHhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHH
Q 015435 347 HIIKQIGMFTFTGL----NSEQ-VAFMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 347 ~~~~~~~~~~~~~~----~~~~-~~~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l 403 (407)
+..+.+++|.|+.+ +.+. ...+++ +||.+.+| + ||+++. +++++++++++|++++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 306 LLPPRATMYLWGRLPEGVDDLEFGLRLVE-RGVALAPGRGFGPGGKGFVRIALVR-PLEELLEAAKRIREAL 375 (376)
T ss_dssp ECCCCBSSEEEEECCTTCCHHHHHHHHHH-TTEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred ccCCCeeEEEEEECCCCCCHHHHHHHHHH-CCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 55677888888754 3344 445555 59999874 2 999986 8899999999998765
No 43
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=4.7e-41 Score=318.59 Aligned_cols=339 Identities=11% Similarity=0.092 Sum_probs=269.1
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
.++++|||+.|.+ .. +.++.+.+++.+.+. ....+|++ .+ .++|+++++++....+..+++++|++ |+|
T Consensus 21 ~g~~~idl~~~~~---~~-~~~~~v~~a~~~~~~---~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~--t~g 89 (377)
T 3fdb_A 21 YGQGVLPLWVAES---DF-STCPAVLQAITDAVQ---REAFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFP--IPD 89 (377)
T ss_dssp SCTTSEECCSSCC---CS-CCCHHHHHHHHHHHH---TTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEE--ESC
T ss_pred cCCCeeeecccCC---CC-CCCHHHHHHHHHHHH---cCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEE--eCC
Confidence 4689999999963 33 556677777766665 23567877 77 89999999999544444455689999 999
Q ss_pred cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435 109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAH 188 (407)
Q Consensus 109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~ 188 (407)
+++++.++++ ..+.+||+|+++.|+|.++...++..|.+++.+|.. + + +|++++++.+. ++++++++ ++|+
T Consensus 90 ~~~a~~~~~~--~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~-~--~d~~~l~~~l~--~~~~~v~i-~~p~ 160 (377)
T 3fdb_A 90 VVRGLYIAID--HFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDAT-G-G--INLHDVEKGFQ--AGARSILL-CNPY 160 (377)
T ss_dssp HHHHHHHHHH--HHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECT-T-S--CCHHHHHHHHH--TTCCEEEE-ESSB
T ss_pred hHHHHHHHHH--HhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCC-C-C--CCHHHHHHHhc--cCCCEEEE-eCCC
Confidence 9999999953 347799999999999999999999999999999983 2 2 99999999998 45677666 8999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCC-CCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEE
Q 015435 189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGS-LDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSI 267 (407)
Q Consensus 189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 267 (407)
||||.+++.+++++|+++|++||+++|+||+|.++.+++ .. ..++..+. ..++++++.|+||.+|++|+|+||+
T Consensus 161 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~--~~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~-- 235 (377)
T 3fdb_A 161 NPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHT--VAAGVSDT-AASVCITITAPSKAWNIAGLKCAQI-- 235 (377)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCC--CGGGSCHH-HHHHEEEEECSTTTTTCGGGCCEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCC--cccHHHcc-CCCcEEEEEeChHhccCcchhheEE--
Confidence 999999999999999999999999999999999998865 21 12221111 1457899999999999999999998
Q ss_pred eecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcc
Q 015435 268 VCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDWS 346 (407)
Q Consensus 268 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~ 346 (407)
+++++++.+.+ .......+.+++.+++.++..++++.. +++++.+++++++++++.+.|++ .+. +.
T Consensus 236 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~ 302 (377)
T 3fdb_A 236 IFSNPSDAEHW----QQLSPVIKDGASTLGLIAAEAAYRYGT------DFLNQEVAYLKNNHDFLLHEIPKRIPG---AK 302 (377)
T ss_dssp ECCSHHHHHHH----HHSCHHHHCCCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHSTT---CE
T ss_pred EeCCHHHHHHH----HHHHHhhcCCCCHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHhhCCC---ce
Confidence 57666654444 334333445788899998888887532 55778889999999999999988 432 77
Q ss_pred cccCCceeEEecCC-----CHHHHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435 347 HIIKQIGMFTFTGL-----NSEQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 347 ~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
+..+.++++.|+.+ +.+.+..+++++||.+.||. ||+++. +++++++++++|+++++++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~-~~e~i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 303 ITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT-SREVLEEAIDRMAKAVSHH 376 (377)
T ss_dssp ECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHTTC
T ss_pred EecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhhc
Confidence 88888999888744 34567788887899998752 999996 8899999999999998754
No 44
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.5e-41 Score=324.33 Aligned_cols=363 Identities=13% Similarity=0.124 Sum_probs=270.2
Q ss_pred ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435 6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA 85 (407)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a 85 (407)
+.+|+...+++.+....+ +.. ..++|||+.|.+ +. +.++.+.+++.+.+. + ....|.+..|..++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~--~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~-~--~~~~y~~~~g~~~l~~~la 72 (411)
T 2o0r_A 3 TVSRLRPYATTVFAEMSA-LAT--RIGAVNLGQGFP---DE-DGPPKMLQAAQDAIA-G--GVNQYPPGPGSAPLRRAIA 72 (411)
T ss_dssp CCGGGGGGSSCHHHHHHH-HHH--TTTCEESSCSSC---SS-CCCHHHHHHHHHHHH-T--TCCSCCCTTCCHHHHHHHH
T ss_pred hhhHhHhcCccHHHHHHH-Hhh--cCCeeeccCcCC---CC-CCCHHHHHHHHHHHh-c--CCCCCCCCCCCHHHHHHHH
Confidence 445666666555444433 332 246899999975 22 345566666666664 2 2457888888999999999
Q ss_pred HHHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecC-CCCCc
Q 015435 86 KLILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDP-ATRGL 163 (407)
Q Consensus 86 ~~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~ 163 (407)
+++....+..++++ +|++ |+|+++++.+++.. .+.+||+|+++.|+|.++...++..|.+++.+|+..+ .++.+
T Consensus 73 ~~~~~~~g~~~~~~~~v~~--t~g~~~al~~~~~~--~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 148 (411)
T 2o0r_A 73 AQRRRHFGVDYDPETEVLV--TVGATEAIAAAVLG--LVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFAL 148 (411)
T ss_dssp HHHHHHHCCCCCTTTSEEE--EEHHHHHHHHHHHH--HCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEEC
T ss_pred HHHHHHcCCCCCCCceEEE--eCCHHHHHHHHHHH--hcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCC
Confidence 99843333334567 9999 99999999999543 3679999999999999999999999999999998432 24568
Q ss_pred ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435 164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG 243 (407)
Q Consensus 164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~ 243 (407)
|++++++.+. ++++++++ ++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++.. ..++..+....+
T Consensus 149 d~~~l~~~l~--~~~~~v~l-~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~ 223 (411)
T 2o0r_A 149 DADALRRAVT--PRTRALII-NSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHAR--HLPLAGFDGMAE 223 (411)
T ss_dssp CHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC--CCCGGGSTTTGG
T ss_pred CHHHHHHhhc--cCceEEEE-eCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC--CcChhhccCCCC
Confidence 9999999986 45666666 799999999999999999999999999999999999998875421 112211111245
Q ss_pred cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD 323 (407)
Q Consensus 244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (407)
.++++.|+||.++++|+|+||+ +++ +++.+ .+........++++.+.+.++..+++... +++++.++
T Consensus 224 ~~i~~~s~sK~~~~~G~r~G~~--~~~-~~~~~----~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~ 290 (411)
T 2o0r_A 224 RTITISSAAKMFNCTGWKIGWA--CGP-AELIA----GVRAAKQYLSYVGGAPFQPAVALALDTED------AWVAALRN 290 (411)
T ss_dssp GEEEEEEHHHHTTCTTTCEEEE--ECC-HHHHH----HHHHHHHHHTSCCCTTHHHHHHHHHHHCH------HHHHHHHH
T ss_pred CEEEEeechhhcCCccceEEEE--eeC-HHHHH----HHHHHHhhccCCCChHHHHHHHHHHhCCh------HHHHHHHH
Confidence 7899999999999999999999 454 55444 34433333344667778888887776432 55778889
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC------CHHH-HHHhHhhccEEEcCC-----------------
Q 015435 324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL------NSEQ-VAFMTKEYHIYMTSD----------------- 379 (407)
Q Consensus 324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~l~~~gi~~~~g----------------- 379 (407)
+++++++++.+.|++.+ +.+..+.+++|.|+.+ +... ...+++++||.+.+|
T Consensus 291 ~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~ 366 (411)
T 2o0r_A 291 SLRARRDRLAAGLTEIG----FAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADV 366 (411)
T ss_dssp HHHHHHHHHHHHHHHHT----CEECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CC
T ss_pred HHHHHHHHHHHHHHHcC----CEecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccC
Confidence 99999999999999886 6777788888888754 3433 455666789998652
Q ss_pred C----eEEecCCCCCChhHHHHHHHHHHHh
Q 015435 380 G----RISMAGLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 380 g----Ris~~~~~~e~i~~~~~~l~~~l~~ 405 (407)
+ ||+++. +++++++++++|++++++
T Consensus 367 ~~~~iRis~~~-~~e~i~~~~~~l~~~~~~ 395 (411)
T 2o0r_A 367 WNHLVRFTFCK-RDDTLDEAIRRLSVLAER 395 (411)
T ss_dssp GGGCEEEECCS-CHHHHHHHHHHHGGGGC-
T ss_pred CCCeEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 2 999986 888999999999887643
No 45
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=100.00 E-value=2.2e-40 Score=317.23 Aligned_cols=366 Identities=13% Similarity=0.089 Sum_probs=272.0
Q ss_pred cccccCCCCCchhh--hhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHH
Q 015435 7 FGKIVRAPEDPILG--VTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLS 84 (407)
Q Consensus 7 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~ 84 (407)
.+|+.+.+.+.+.. ..+.+.. +++++|||+.|.+.. ...+.++.+.+++.+.+. . ....|++..|..++|+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~i~l~~~~~~~-~~~~~~~~v~~a~~~~~~--~-~~~~y~~~~g~~~l~~~l 87 (406)
T 1xi9_A 13 SKRALSVEYAIRDVVLPARELEK-KGIKVIRLNIGDPVK-FDFQPPEHMKEAYCKAIK--E-GHNYYGDSEGLPELRKAI 87 (406)
T ss_dssp CHHHHTCCC-------CHHHHHH-TTCCCEECCCCCGGG-TTCCCCHHHHHHHHHHHH--T-TCCSCCCTTCCHHHHHHH
T ss_pred HHHHhcCChhHHHHHHHHHHHHH-cCCCEEEecCCCCCc-CCCCCCHHHHHHHHHHHh--c-CCCCCCCCCCcHHHHHHH
Confidence 34555554444333 3333333 357899999997511 022445566666666664 2 234688778999999999
Q ss_pred HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC
Q 015435 85 AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN 164 (407)
Q Consensus 85 a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d 164 (407)
++++....+..+++++|++ |+|+++++.+++..+ +.+||+|++++|+|.++...++..|.+++.+|.+.+.++.+|
T Consensus 88 a~~l~~~~g~~~~~~~v~~--t~g~~~al~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d 163 (406)
T 1xi9_A 88 VEREKRKNGVDITPDDVRV--TAAVTEALQLIFGAL--LDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPD 163 (406)
T ss_dssp HHHHHHHHCCCCCGGGEEE--ESHHHHHHHHHHHHH--CCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEEC
T ss_pred HHHHHHhcCCCCCHHHEEE--cCChHHHHHHHHHHh--CCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCC
Confidence 9999543344456689999 999999999995443 779999999999999999999999999999998532456789
Q ss_pred hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435 165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244 (407)
Q Consensus 165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~ 244 (407)
++++++.+. ++++++++ ++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+ + .+.
T Consensus 164 ~~~l~~~l~--~~~~~v~i-~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~---~~~~~~~-~-~~~ 235 (406)
T 1xi9_A 164 IDDIRKKIT--DRTKAIAV-INPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE---HISPGSL-T-KDV 235 (406)
T ss_dssp HHHHHHHCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSC---CCCHHHH-C-SSS
T ss_pred HHHHHHhhC--cCceEEEE-ECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC---CCCHHHc-C-CCc
Confidence 999999987 45566666 79999999999999999999999999999999999999887432 2233333 2 566
Q ss_pred -EEEEEecCccccccCCCcceeEEe-ecCh----hhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHH
Q 015435 245 -CLVAQSYAKNMGLYGERVGALSIV-CKTE----DVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLEL 318 (407)
Q Consensus 245 -~i~~~s~sK~~~~~G~r~G~~~~v-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 318 (407)
+++++|+||.++++|+|+||+ + +.++ ++.+.+ ....... .+++.+.+.++..+++... +.+
T Consensus 236 ~~i~~~s~sK~~~~~G~r~G~~--~~~~~~~~~~~l~~~l----~~~~~~~-~~~~~~~~~a~~~~l~~~~------~~~ 302 (406)
T 1xi9_A 236 PVIVMNGLSKVYFATGWRLGYM--YFVDPENKLSEVREAI----DRLARIR-LCPNTPAQFAAIAGLTGPM------DYL 302 (406)
T ss_dssp CEEEEEESTTTTCCGGGCCEEE--EEECTTCTTHHHHHHH----HHHHHHT-CCSCSHHHHHHHHHHHSCC------HHH
T ss_pred eEEEEeccccccCCCccEEEEE--EEecCchhHHHHHHHH----HHHHHhh-cCCCHHHHHHHHHHHhCCc------HHH
Confidence 899999999999999999999 4 1445 544443 3333332 4778888988888885332 346
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecC------CCHHHH-HHhHhhccEEEcCC--------C--e
Q 015435 319 KAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTG------LNSEQV-AFMTKEYHIYMTSD--------G--R 381 (407)
Q Consensus 319 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~l~~~gi~~~~g--------g--R 381 (407)
++.+++++++++++.+.|++.+. +.+..+.++++.|+. .+.+.+ ..+++++||.+.++ + |
T Consensus 303 ~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lR 379 (406)
T 1xi9_A 303 KEYMKKLKERRDYIYKRLNEIPG---ISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFR 379 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTT---EECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC---CeeecCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEE
Confidence 77888999999999999998732 677777888888853 344444 45665789999875 2 9
Q ss_pred EEecCCCCCChhHHHHHHHHHHHhh
Q 015435 382 ISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 382 is~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
|+++ .+++++++++++|+++++++
T Consensus 380 is~~-~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 380 AVFL-PPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp EECC-SCHHHHHHHHHHHHHHHHHC
T ss_pred EEec-CCHHHHHHHHHHHHHHHHHH
Confidence 9998 58899999999999998753
No 46
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=3.8e-40 Score=315.85 Aligned_cols=362 Identities=15% Similarity=0.166 Sum_probs=277.0
Q ss_pred ccccccCCCCCchhhhhHhhh--hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHH
Q 015435 6 VFGKIVRAPEDPILGVTVAYN--KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKL 83 (407)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ 83 (407)
|.+|+...+++++.++...+. ...++++|||+.|.+ .. +.++.+.+++ +.+. . ....|.+..|..+++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~---~~-~~~~~v~~a~-~~l~--~-~~~~y~~~~g~~~l~~~ 87 (409)
T 2gb3_A 16 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQP---DL-KTPEVFFERI-YENK--P-EVVYYSHSAGIWELREA 87 (409)
T ss_dssp CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCC---CS-CCCTHHHHHH-HHTC--C-SSCCCCCTTCCHHHHHH
T ss_pred HHHHhhcCCccHHHHHHHHHHHHHhcCCCEEeccCCCC---CC-CCCHHHHHHH-HHHh--c-CCCCCCCCCCcHHHHHH
Confidence 356777777777777766544 234678999999985 22 3455666666 6554 2 24568888899999999
Q ss_pred HHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCc
Q 015435 84 SAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGL 163 (407)
Q Consensus 84 ~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~ 163 (407)
+++++....+..++++++++ |+|+++++.+++.. .+.+||+|+++.|+|.++...++..|.+++.+|...+.++.+
T Consensus 88 la~~~~~~~g~~~~~~~v~~--~~g~t~a~~~~~~~--~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~ 163 (409)
T 2gb3_A 88 FASYYKRRQRVDVKPENVLV--TNGGSEAILFSFAV--IANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI 163 (409)
T ss_dssp HHHHHHHTSCCCCCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHhCCCCCHHHEEE--eCCHHHHHHHHHHH--hCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc
Confidence 99999655555566789999 99999999999544 377999999999999999999999999999999842233444
Q ss_pred ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435 164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG 243 (407)
Q Consensus 164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~ 243 (407)
++++++.+. ++++++++ ++|+||||.+++.+++++|+++|++||++||+||+|..+.+++. ..+. +....+
T Consensus 164 -~~~l~~~l~--~~~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~---~~~~--~~~~~~ 234 (409)
T 2gb3_A 164 -PQNLESFIN--ERTKGIVL-SNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE---FASA--LSIESD 234 (409)
T ss_dssp -CTTGGGGCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC---CCCG--GGSCCT
T ss_pred -HHHHHHhhC--cCCeEEEE-CCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCC---CCCc--cccCCC
Confidence 888888876 45566666 89999999999999999999999999999999999999887541 1111 112245
Q ss_pred cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD 323 (407)
Q Consensus 244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (407)
.+++++|+||.++++|+|+||+ +++++++.+. +......+. +++.+.+.++..+++... +++++.++
T Consensus 235 ~~i~~~s~sK~~g~~G~r~G~~--~~~~~~l~~~----l~~~~~~~~-~~~~~~~~a~~~~l~~~~------~~~~~~~~ 301 (409)
T 2gb3_A 235 KVVVIDSVSKKFSACGARVGCL--ITRNEELISH----AMKLAQGRL-APPLLEQIGSVGLLNLDD------SFFDFVRE 301 (409)
T ss_dssp TEEEEEESTTTTTCGGGCCEEE--ECSCHHHHHH----HHHHHHHSC-CCCHHHHHHHHHHHTCCH------HHHHHHHH
T ss_pred CEEEEecchhccCCccceEEEE--EECcHHHHHH----HHHHHhccC-CCCHHHHHHHHHHHhccH------HHHHHHHH
Confidence 7899999999999999999999 5764354444 444444444 778888998888886532 45778888
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccc-ccCCceeEEecCC---CHHHH-HHhHhh-----ccEEEcCC-----------C--
Q 015435 324 RIISMRQQLFDALSARGTPGDWSH-IIKQIGMFTFTGL---NSEQV-AFMTKE-----YHIYMTSD-----------G-- 380 (407)
Q Consensus 324 ~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~-~~~l~~-----~gi~~~~g-----------g-- 380 (407)
+++++++++.+.|++.+ +.+ ..+.++++.|+.+ +.+.+ ..++++ +||.+.++ +
T Consensus 302 ~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~i 377 (409)
T 2gb3_A 302 TYRERVETVLKKLEEHG----LKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEI 377 (409)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEE
T ss_pred HHHHHHHHHHHHHHHcC----ceeeeCCCeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEE
Confidence 99999999999999886 666 6677888888754 45544 455555 59999763 2
Q ss_pred eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435 381 RISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 381 Ris~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
||+++ .+++++++++++|+++++++
T Consensus 378 Ris~~-~~~e~i~~~~~~l~~~l~~~ 402 (409)
T 2gb3_A 378 RIACV-LEKDLLSRAIDVLMEGLKMF 402 (409)
T ss_dssp EEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeC-CCHHHHHHHHHHHHHHHHHh
Confidence 99998 48899999999999998753
No 47
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=100.00 E-value=7.1e-40 Score=316.51 Aligned_cols=348 Identities=18% Similarity=0.221 Sum_probs=266.4
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhcccc----------ccccCCCCCCcHHHHHHHHHHHhC--CCCCCCCC
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS----------RVKEYLPIVGLVDFNKLSAKLILG--ADSPAIKD 98 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~y~~~~g~~~l~~~~a~~~~~--~~~~~~~~ 98 (407)
...|+|+.+. ++.+.+.+.+.+........ ...+|.+..|.+++|+++++++.. ..+..+++
T Consensus 38 ~~~i~lg~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~ 111 (435)
T 3piu_A 38 NGIIQMGLAE------NQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDP 111 (435)
T ss_dssp TSBEECSSCC------CCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCG
T ss_pred CCeEEecccc------ccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCH
Confidence 4677777653 25556666666655431111 115698899999999999999952 22234556
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcCceeeEEEeecCCCCCcChhhHHHHHHcC--
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAGLSVKTYRYYDPATRGLNFQGLLEDLRAA-- 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~-- 175 (407)
++|++ |+|+++++.+++.. .+.+||.|+++.|+|.++...+. ..|.+++.++.+++.++.+|++++++++.+.
T Consensus 112 ~~v~~--~~gg~~a~~~~~~~--l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 187 (435)
T 3piu_A 112 NHLVL--TAGATSANETFIFC--LADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEK 187 (435)
T ss_dssp GGEEE--EEHHHHHHHHHHHH--HCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHH
T ss_pred HHEEE--cCChHHHHHHHHHH--hcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHh
Confidence 89999 99999999999533 47799999999999999999888 7999999999854445678999999998741
Q ss_pred --CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc---------CCc
Q 015435 176 --PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD---------GGE 244 (407)
Q Consensus 176 --~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~---------~~~ 244 (407)
.+++++++ ++|+||||.+++.+++++|+++|++||++||+||+|.++.+.+. ...++..+... .++
T Consensus 188 ~~~~~~~v~i-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~ 264 (435)
T 3piu_A 188 RNLRVKGVLV-TNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP--SFISVMEVLKDRNCDENSEVWQR 264 (435)
T ss_dssp TTCCEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS--CCCCHHHHHHC-------CGGGG
T ss_pred cCCCeEEEEE-cCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcCHHHhccccccccccCCCCC
Confidence 24556555 89999999999999999999999999999999999999877643 22233333332 567
Q ss_pred EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435 245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR 324 (407)
Q Consensus 245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 324 (407)
++++.|+||.+|++|+|+||+ +++++++.+.+ ..... ..+.+.+.+.++..++.+... +.+++++.+++
T Consensus 265 ~i~i~s~sK~~g~~G~r~G~~--~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~ 333 (435)
T 3piu_A 265 VHVVYSLSKDLGLPGFRVGAI--YSNDDMVVAAA----TKMSS--FGLVSSQTQHLLSAMLSDKKL---TKNYIAENHKR 333 (435)
T ss_dssp EEEEEESSSSSCCGGGCEEEE--EESCHHHHHHH----HHHGG--GSCCCHHHHHHHHHHHHCHHH---HHHHHHHHHHH
T ss_pred EEEEEeeecccCCCceeEEEE--EeCCHHHHHHH----HHHhh--cCCCCHHHHHHHHHHhcChHH---HHHHHHHHHHH
Confidence 899999999999999999999 67666544433 33322 236778888888888887642 13456788899
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCH-----------HHHHHhHhhccEEEcCC--------C--eEE
Q 015435 325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNS-----------EQVAFMTKEYHIYMTSD--------G--RIS 383 (407)
Q Consensus 325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~~~~g--------g--Ris 383 (407)
++++++++.+.|++.+ +.+..+.+|+|.|+.+.. +....+++++||.+.|| + ||+
T Consensus 334 ~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~ 409 (435)
T 3piu_A 334 LKQRQKKLVSGLQKSG----ISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVC 409 (435)
T ss_dssp HHHHHHHHHHHHHTTT----CEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEE
T ss_pred HHHHHHHHHHHHHhcC----CcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEE
Confidence 9999999999999887 777888888999986632 34556677779999874 1 999
Q ss_pred ecCCCCCChhHHHHHHHHHHHhh
Q 015435 384 MAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 384 ~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
++..+++++++++++|+++++++
T Consensus 410 ~~~~~~e~i~~~l~~l~~~l~~~ 432 (435)
T 3piu_A 410 FANLPERTLDLAMQRLKAFVGEY 432 (435)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCHHHHHHHHHHHHHHHHHH
Confidence 97558899999999999998764
No 48
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=5.1e-40 Score=313.72 Aligned_cols=364 Identities=18% Similarity=0.182 Sum_probs=270.3
Q ss_pred ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435 6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA 85 (407)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a 85 (407)
+..|+...+.+.+....... .++++|||+.|.+ +..+ ..++.+.+++.+.+.+......+|.+..|..++|++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~---~~~~~i~l~~g~~-~~~~-~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la 84 (397)
T 2zyj_A 10 FGKGAGRIQASTIRELLKLT---QRPGILSFAGGLP-APEL-FPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVA 84 (397)
T ss_dssp SCGGGGGCCCCHHHHHHHHH---TSTTCEEESSCCC-CGGG-CCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHH
T ss_pred hhhhhcccCchHHHHHHhhc---cCCCceecCCCCC-Cchh-CCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHH
Confidence 44566555555555544432 2468999999975 1122 22334555555555411112467888789999999999
Q ss_pred HHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcCh
Q 015435 86 KLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNF 165 (407)
Q Consensus 86 ~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~ 165 (407)
+++ + +++++|++ |+|+++++.++++. .+.+||+|+++.|+|.++...++..|.+++.+|.+ ++ ++|+
T Consensus 85 ~~~-g-----~~~~~v~~--~~g~~~al~~~~~~--~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~--~~d~ 151 (397)
T 2zyj_A 85 EWI-G-----VRPEEVLI--TTGSQQALDLVGKV--FLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAG-EE--GPDL 151 (397)
T ss_dssp HHH-T-----SCGGGEEE--ESHHHHHHHHHHHH--HCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEE-TT--EECH
T ss_pred HHh-C-----CChhhEEE--eccHHHHHHHHHHH--hCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcC-CC--CCCH
Confidence 999 4 33579999 99999999998543 36799999999999999999999999999999984 32 4999
Q ss_pred hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc--CC
Q 015435 166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD--GG 243 (407)
Q Consensus 166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~--~~ 243 (407)
+++++.+.+. ++++++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++.. ..++..+... .+
T Consensus 152 ~~l~~~l~~~-~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~ 228 (397)
T 2zyj_A 152 DALEEVLKRE-RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEAR--LPSLFELAREAGYP 228 (397)
T ss_dssp HHHHHHHHHC-CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCC--CCCHHHHHHHHTCC
T ss_pred HHHHHHHhhc-CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCC--CCchhhhCcccCCC
Confidence 9999999742 46676666999999999999999999999999999999999999999875421 1223333222 16
Q ss_pred cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD 323 (407)
Q Consensus 244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (407)
++++++|+||.++ +|+|+||+ +++ ++ +.+.+.........+++.+++.++..++++.. | +++++.++
T Consensus 229 ~~i~~~s~sK~~~-~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~ 295 (397)
T 2zyj_A 229 GVIYLGSFSKVLS-PGLRVAFA--VAH-PE----ALQKLVQAKQGADLHTPMLNQMLVHELLKEGF----S-ERLERVRR 295 (397)
T ss_dssp CEEEEEESTTTTC-GGGCCEEE--ECC-HH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTH----H-HHHHHHHH
T ss_pred eEEEEeccccccc-ccceeEEE--ecC-HH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCC----H-HHHHHHHH
Confidence 7899999999999 99999999 565 44 44444444334445678889999998888652 3 55778889
Q ss_pred HHHHHHHHHHHHHHhc-CCCCCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCC----------C--eEEecC
Q 015435 324 RIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSD----------G--RISMAG 386 (407)
Q Consensus 324 ~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~g----------g--Ris~~~ 386 (407)
+++++++++.+.|++. +. .+.+..+.+++|.|+.+ +.+.+.+.|.++||.+.+| + ||+++.
T Consensus 296 ~~~~~~~~l~~~L~~~~~~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~ 373 (397)
T 2zyj_A 296 VYREKAQAMLHALDREVPK--EVRYTRPKGGMFVWMELPKGLSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYAT 373 (397)
T ss_dssp HHHHHHHHHHHHHHHHSCT--TSEECCCSBSSEEEEECSTTCCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHCCC--CeEEccCCccEEEEEEcCCCCCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCC
Confidence 9999999999999874 20 16666677888888755 4555544444569999874 2 999986
Q ss_pred CCCCChhHHHHHHHHHHHh
Q 015435 387 LSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 387 ~~~e~i~~~~~~l~~~l~~ 405 (407)
.+++++++++++|++++++
T Consensus 374 ~~~~~i~~~~~~l~~~l~~ 392 (397)
T 2zyj_A 374 LDREGIAEGVRRLGRALKG 392 (397)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 5678999999999998865
No 49
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=1.7e-40 Score=314.05 Aligned_cols=350 Identities=13% Similarity=0.179 Sum_probs=268.4
Q ss_pred ccccCCCCCchhhhhHhhhh--cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435 8 GKIVRAPEDPILGVTVAYNK--DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA 85 (407)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a 85 (407)
+|+...++++++++.....+ ..++++|||+.|.+ .. +.++.+.+++.+.+. . ...+|++..|..++|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~-~~~~y~~~~~~~~l~~~la 76 (370)
T 2z61_A 4 KRLLNFESFEVMDILALAQKLESEGKKVIHLEIGEP---DF-NTPKPIVDEGIKSLK--E-GKTHYTDSRGILELREKIS 76 (370)
T ss_dssp HHHHHCCCCTTHHHHHHHHHHHHTTCCCEECCCCSC---SS-CCCHHHHHHHHHHHH--T-TCCSCCCTTCCHHHHHHHH
T ss_pred hhhhhccccHHHHHHHHHHHHHhcCCCEEEccCCCC---CC-CCCHHHHHHHHHHHH--c-CccCCCCCCCCHHHHHHHH
Confidence 45555666777776654442 24678999999985 22 235566666666664 2 2456877789999999999
Q ss_pred HHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcCh
Q 015435 86 KLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNF 165 (407)
Q Consensus 86 ~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~ 165 (407)
+++....+..+++++|++ |+|+++++.++++.+ +.+||+|++++|+|..+...++..|.+++.+| +|+
T Consensus 77 ~~~~~~~g~~~~~~~v~~--~~g~~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~ 144 (370)
T 2z61_A 77 ELYKDKYKADIIPDNIII--TGGSSLGLFFALSSI--IDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTV 144 (370)
T ss_dssp HHHHHHSSCCCCGGGEEE--ESSHHHHHHHHHHHH--CCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSH
T ss_pred HHHHHHhCCCCChhhEEE--CCChHHHHHHHHHHh--cCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCH
Confidence 999544454566789999 999999999995443 77999999999999999999999999998885 689
Q ss_pred hhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435 166 QGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245 (407)
Q Consensus 166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (407)
+++++.+. ++++++++ ++|+||||.+++.+ |+++|++||+++|+||+|..+.+++.. .++..+....+++
T Consensus 145 ~~l~~~l~--~~~~~v~~-~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~~---~~~~~~~~~~~~~ 214 (370)
T 2z61_A 145 ESLEEALS--DKTKAIII-NSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGKC---YSAIEFDENLEKT 214 (370)
T ss_dssp HHHHHHCC--SSEEEEEE-ESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSCC---CCGGGTCTTCSSE
T ss_pred HHHHHhcc--cCceEEEE-cCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCCC---cCHHHccCCCCcE
Confidence 99999886 45566666 89999999999977 888899999999999999998875421 1221121234678
Q ss_pred EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC-hhhHHhHHHHHHHHHHH
Q 015435 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD-STMYKEWTLELKAMADR 324 (407)
Q Consensus 246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~ 324 (407)
++++|+||.++++|+|+||+ +++ ++ +.+.+.........+++.+.+.++..+++. . .+++++.+++
T Consensus 215 i~~~s~sK~~~~~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~ 281 (370)
T 2z61_A 215 ILINGFSKLYAMTGWRIGYV--ISN-DE----IIEAILKLQQNLFISAPTISQYAALKAFEKET------EREINSMIKE 281 (370)
T ss_dssp EEEEESTTTTTCGGGCCEEE--ECC-HH----HHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH------HHHHHHHHHH
T ss_pred EEEecChhccCCccceEEEE--EEC-HH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhccC------HHHHHHHHHH
Confidence 99999999999999999999 565 34 444454444444557888889888877764 2 2557788899
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC--CHHHH-HHhHhhccEEEcCC--------C--eEEecCCCCCC
Q 015435 325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL--NSEQV-AFMTKEYHIYMTSD--------G--RISMAGLSSKT 391 (407)
Q Consensus 325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~l~~~gi~~~~g--------g--Ris~~~~~~e~ 391 (407)
++++++++.+.|++.+ +.+..+.++++.|+.+ +.+.+ ..+++++||.+.+| + ||+++. ++++
T Consensus 282 ~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~-~~~~ 356 (370)
T 2z61_A 282 FDRRRRLVLKYVKDFG----WEVNNPIGAYYVFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYAN-SYEN 356 (370)
T ss_dssp HHHHHHHHHHHHHHTT----CBCCCCCBTTEECCBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCS-CHHH
T ss_pred HHHHHHHHHHHHHHcC----CeecCCCcceEEEEecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeC-CHHH
Confidence 9999999999999886 6767788899998876 45444 45555789999874 2 999995 8899
Q ss_pred hhHHHHHHHHHHH
Q 015435 392 VPHLTDAIHAAVT 404 (407)
Q Consensus 392 i~~~~~~l~~~l~ 404 (407)
+++++++|+++++
T Consensus 357 i~~~~~~l~~~l~ 369 (370)
T 2z61_A 357 IKEGLERIKEFLN 369 (370)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
No 50
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=100.00 E-value=1.3e-40 Score=321.48 Aligned_cols=341 Identities=15% Similarity=0.187 Sum_probs=258.1
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc--cccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ--SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC 106 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t 106 (407)
.++++|||++|.+ +. +.|+.+++++.+.+.... ....+|++..|.+++++++++++.. +..+++++|++ |
T Consensus 54 ~~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~~~~~~~~i~~--t 125 (432)
T 3ei9_A 54 PDAQVISLGIGDT---TE-PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG--GLGIGDDDVFV--S 125 (432)
T ss_dssp TTCCCEECSSCCC---CS-CCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT--TTTCCGGGEEE--E
T ss_pred CCCCeEEccCCCC---CC-CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc--cCCCCcceEEE--C
Confidence 4568999999975 43 677777777777664111 2335788888999999999999852 34456789999 9
Q ss_pred CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCc------------eeeEEEeecCCCCCcChhhHHHHHHc
Q 015435 107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL------------SVKTYRYYDPATRGLNFQGLLEDLRA 174 (407)
Q Consensus 107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~------------~~~~v~~~~~~~~~~d~~~l~~~i~~ 174 (407)
+|+++++.++ ...+.+||.|++++|+|.++...++..|. +++.++++++.++..|+++
T Consensus 126 ~G~~~al~~l---~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------- 195 (432)
T 3ei9_A 126 DGAKCDISRL---QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST------- 195 (432)
T ss_dssp SCHHHHHHHH---HHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-------
T ss_pred CChHHHHHHH---HHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-------
Confidence 9999999875 34578999999999999999999888774 6788888433333444432
Q ss_pred CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcc
Q 015435 175 APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKN 254 (407)
Q Consensus 175 ~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 254 (407)
.++++++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++.. .++..+....+++++++||||.
T Consensus 196 ~~~~~~v~l-~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~---~~~~~~~~~~~~~i~~~S~SK~ 271 (432)
T 3ei9_A 196 VGRTDIIFF-CSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNP---RSIFEIPGAEEVAMETASFSNY 271 (432)
T ss_dssp CCCCSEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCC---SSGGGSTTGGGTEEEEEESHHH
T ss_pred CCCCCEEEE-eCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCC---CChhhcCCCCCeEEEEecchhc
Confidence 256778777 799999999999999999999999999999999999999876421 2222222234678999999999
Q ss_pred ccccCCCcceeEEeecChhh---HHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 015435 255 MGLYGERVGALSIVCKTEDV---ASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQ 331 (407)
Q Consensus 255 ~~~~G~r~G~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (407)
+|++|+|+||+ +++++.. ...+...+.......+.+++.++|.++..++.+.. .+++++.++++++++++
T Consensus 272 ~g~~G~r~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~ 344 (432)
T 3ei9_A 272 AGFTGVRLGWT--VIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEG-----LEAMHKVIGFYKENTNI 344 (432)
T ss_dssp HCTTTTCCEEE--ECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred cCCcccceEEE--EEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHH
Confidence 99999999999 5664321 00012333333333445788899999888887432 14577888999999999
Q ss_pred HHHHHHhcCCCCCcccccCCceeEEecCC---CH-HHHHHhHhhccEEEcCC--------C--eEEecCCCCCChhHHHH
Q 015435 332 LFDALSARGTPGDWSHIIKQIGMFTFTGL---NS-EQVAFMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTD 397 (407)
Q Consensus 332 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~ 397 (407)
+.+.|++.+ +.+..+.+++|+|+.+ +. +++..+++++||.+.|| + ||++.. ++++++++++
T Consensus 345 l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~ 419 (432)
T 3ei9_A 345 IIDTFTSLG----YDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFG-HRENILEACR 419 (432)
T ss_dssp HHHHHHHTT----CCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHH
T ss_pred HHHHHHHCC----ceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecC-CHHHHHHHHH
Confidence 999999887 6777777788888866 33 45667788789999875 1 999876 8899999999
Q ss_pred HHHHHH
Q 015435 398 AIHAAV 403 (407)
Q Consensus 398 ~l~~~l 403 (407)
+|++--
T Consensus 420 rl~~~~ 425 (432)
T 3ei9_A 420 RFKQLY 425 (432)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
No 51
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=100.00 E-value=4.1e-40 Score=317.04 Aligned_cols=348 Identities=15% Similarity=0.124 Sum_probs=262.1
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHH-HHHhccccccccC-CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAE-QLLVNDQSRVKEY-LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y-~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
...|||+.|.|.. ...|.++.+.+++. +++..+.....+| .+..|.+++|+++++++ + +++++|++ |+|
T Consensus 25 ~~~i~l~~g~p~~-~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~-~-----~~~~~i~~--t~G 95 (423)
T 3ez1_A 25 GLNLNMQRGQPAD-ADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYL-D-----VKAENVLV--WNN 95 (423)
T ss_dssp TCCEESCCCCCCH-HHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHT-T-----SCGGGEEE--CSS
T ss_pred CceEecCCCCCCh-HhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHh-C-----CChhhEEE--eCC
Confidence 5789999998611 11244545555553 2332122234779 88899999999999998 3 34589999 999
Q ss_pred cccHHH--HHHHHHHhhc--C---------CCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435 109 GTGSLR--VGAEFLARHY--H---------QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA 175 (407)
Q Consensus 109 ~t~a~~--~~~~~~~~~~--~---------gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 175 (407)
+++++. +++ ...+. + ||+|+++.|+|..+...++..|.+++.+|++ + .++|++++++++.+.
T Consensus 96 ~~~al~~~~~~--~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~--~g~d~~~l~~~l~~~ 170 (423)
T 3ez1_A 96 SSLELQGLVLT--FALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQ-S--DGPDVDAVERLAGTD 170 (423)
T ss_dssp CHHHHHHHHHH--HHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEE-T--TEECHHHHHHHHHSC
T ss_pred cHHHHHHHHHH--HHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCC-C--CCCCHHHHHHHHhhC
Confidence 999997 663 33355 6 5999999999999999999999999999995 3 259999999999633
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHH-HHcCceeeeccccccccCCC-CC---chhHHHHHHHHcCCcEEEEEe
Q 015435 176 PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLM-RSKGLLPFFDSAYQGFASGS-LD---ADAQSVRMFVADGGECLVAQS 250 (407)
Q Consensus 176 ~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~-~~~~~~li~D~~y~~~~~~~-~~---~~~~~~~~~~~~~~~~i~~~s 250 (407)
+++++++++++||||||.+++.+++++|+++| ++||+++|+||+|..+.+.+ .. .+...+....+..+++++++|
T Consensus 171 ~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 250 (423)
T 3ez1_A 171 PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFAS 250 (423)
T ss_dssp TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEE
T ss_pred CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeC
Confidence 56778777789999999999999999999999 99999999999998655432 11 122222222345678999999
Q ss_pred cCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC--hhhHHhHHHHHHHHHHHHHHH
Q 015435 251 YAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD--STMYKEWTLELKAMADRIISM 328 (407)
Q Consensus 251 ~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~ 328 (407)
|||. +++|+|+||+ +++ +.+.+.+.........+++.+.|.++..++++ . .+.+++++.++.++++
T Consensus 251 ~sK~-~~~G~r~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~~~ 318 (423)
T 3ez1_A 251 TSKI-TFAGAGLGFV--ASS-----EDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPG----GLEGLMRDHAAIIAPK 318 (423)
T ss_dssp STTT-SCSSSSCEEE--EEC-----HHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHHHH
T ss_pred chhh-ccCCcceEEE--EeC-----HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccc----hHHHHHHHHHHHHHHH
Confidence 9998 6799999999 566 44555566666556678899999999988876 3 2345566667777777
Q ss_pred HHHHHHHHHh----cCCCCCcccccCCceeEEecCC---CHHHHHHhHhhccEEEcC-C-----------C--eEEecCC
Q 015435 329 RQQLFDALSA----RGTPGDWSHIIKQIGMFTFTGL---NSEQVAFMTKEYHIYMTS-D-----------G--RISMAGL 387 (407)
Q Consensus 329 ~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~-g-----------g--Ris~~~~ 387 (407)
++.+.+.|.+ .+. .+.+..|.+++|.|+.+ +.+.+.+++.++||.+.| | + ||+++..
T Consensus 319 ~~~l~~~l~~~l~~~~~--~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~ 396 (423)
T 3ez1_A 319 FRAVDEVLRAELGEGGE--YATWTLPKGGYFISLDTAEPVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP 396 (423)
T ss_dssp HHHHHHHHHHHHTTTTS--SEEECCCSBSSCEEEEESSSCHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS
T ss_pred HHHHHHHHHHhcCcCCC--ceEEeCCCccEEEEEECCCCcHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC
Confidence 7776666654 330 15666788899998855 566777778889999998 2 1 9999855
Q ss_pred CCCChhHHHHHHHHHHHhh
Q 015435 388 SSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 388 ~~e~i~~~~~~l~~~l~~~ 406 (407)
+++++++++++|+++++++
T Consensus 397 ~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 397 PVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998753
No 52
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=100.00 E-value=2e-39 Score=312.67 Aligned_cols=348 Identities=15% Similarity=0.193 Sum_probs=261.0
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhc---------cccccccCCCCCCcHHHHHHHHHHHhCCCCCC--CCCC
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN---------DQSRVKEYLPIVGLVDFNKLSAKLILGADSPA--IKDN 99 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~--~~~~ 99 (407)
..+|||+.+.. +.+.+.+.+++..... .......|++..|..++|+++++++...++.. ++++
T Consensus 36 ~~~i~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~ 109 (428)
T 1iay_A 36 NGVIQMGLAEN------QLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE 109 (428)
T ss_dssp TSBEECSSCCC------CSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT
T ss_pred Cceeeeccccc------hhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChh
Confidence 57899986651 4444455555443210 01124568777889999999999994333322 4568
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcCceeeEEEeecCCCCCcChhhHHHHHHc----
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAGLSVKTYRYYDPATRGLNFQGLLEDLRA---- 174 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~---- 174 (407)
+|++ |+|+++++.+++.. .+.+||+|+++.|+|..+...+. ..|.+++.+|...+.++.+|++++++.+.+
T Consensus 110 ~i~~--~~G~~~ai~~~~~~--~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 185 (428)
T 1iay_A 110 RVVM--AGGATGANETIIFC--LADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKS 185 (428)
T ss_dssp SCEE--EEHHHHHHHHHHHH--HCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHT
T ss_pred hEEE--ccChHHHHHHHHHH--hCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhc
Confidence 9999 99999999998533 46799999999999999987554 789999999984334567899999998863
Q ss_pred CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc-------CCcEEE
Q 015435 175 APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD-------GGECLV 247 (407)
Q Consensus 175 ~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~-------~~~~i~ 247 (407)
.++++++++ ++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.. ..++..+... .+++++
T Consensus 186 ~~~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~viv 262 (428)
T 1iay_A 186 NIKVKGLIL-TNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ--FVSIAEILDEQEMTYCNKDLVHI 262 (428)
T ss_dssp TCCEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSC--CCCHHHHHTSGGGTTSCTTSEEE
T ss_pred CCceEEEEE-cCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCC--ccCHHHhccccccccCCCCcEEE
Confidence 124556655 899999999999999999999999999999999999998775321 1122233333 578899
Q ss_pred EEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH
Q 015435 248 AQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIIS 327 (407)
Q Consensus 248 ~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 327 (407)
+.|+||.+|++|+|+||+ +++++++.+.+. .... .++++.++|.++..++++..+ +.+++++.++++++
T Consensus 263 ~~s~sK~~g~~Glr~G~~--~~~~~~~~~~~~----~~~~--~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~ 331 (428)
T 1iay_A 263 VYSLSKDMGLPGFRVGII--YSFNDDVVNCAR----KMSS--FGLVSTQTQYFLAAMLSDEKF---VDNFLRESAMRLGK 331 (428)
T ss_dssp EEESTTTSSCGGGCEEEE--EESCHHHHHHHH----HHHT--TSCCCHHHHHHHHHHTTCHHH---HHHHHHHHHHHHHH
T ss_pred EecchhhcCCCCceEEEE--EeCCHHHHHHHH----HHHh--cccCCHHHHHHHHHHhcChHH---HHHHHHHHHHHHHH
Confidence 999999999999999999 676666555443 3322 246788999999999987642 22457788899999
Q ss_pred HHHHHHHHHHhcCCCCCcccccCCceeEEecCCC----------H-HHHHHhHhhccEEEcCC--------C--eEEecC
Q 015435 328 MRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN----------S-EQVAFMTKEYHIYMTSD--------G--RISMAG 386 (407)
Q Consensus 328 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~l~~~gi~~~~g--------g--Ris~~~ 386 (407)
+++++.+.|++.+ +.+..+.+|+|.|+.+. . +....+++++||.+.++ + ||+++.
T Consensus 332 ~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~ 407 (428)
T 1iay_A 332 RHKHFTNGLEVVG----IKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFAN 407 (428)
T ss_dssp HHHHHHHHHHHTT----CCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSS
T ss_pred HHHHHHHHHHhcC----CcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEec
Confidence 9999999999886 66667768888888652 1 23445556569999874 2 999985
Q ss_pred CCCCChhHHHHHHHHHHHhh
Q 015435 387 LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 387 ~~~e~i~~~~~~l~~~l~~~ 406 (407)
.+++++++++++|++++++.
T Consensus 408 ~~~e~i~~~~~~l~~~l~~~ 427 (428)
T 1iay_A 408 MDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp SCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhcc
Confidence 58899999999999998764
No 53
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=3.9e-40 Score=312.81 Aligned_cols=355 Identities=19% Similarity=0.185 Sum_probs=267.1
Q ss_pred ccccccCCCCCchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHH
Q 015435 6 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSA 85 (407)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a 85 (407)
+..|+...+++.+....+.... +++|||+.|.+ +. +.++.+.+++.+.+. . ...|++..+..++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~---~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~--~~~y~~~~~~~~l~~~la 71 (381)
T 1v2d_A 3 LHPRTEAAKESIFPRMSGLAQR---LGAVNLGQGFP---SN-PPPPFLLEAVRRALG--R--QDQYAPPAGLPALREALA 71 (381)
T ss_dssp CCGGGGGC---CHHHHHHHHHH---HTCEECCCCSC---SS-CCCHHHHHHHHHHTT--T--SCSCCCTTCCHHHHHHHH
T ss_pred hhhhhhhcCccHHHHHHHHHhc---CCeEEecCCCC---CC-CCCHHHHHHHHHHHH--H--hcCCCCCCCCHHHHHHHH
Confidence 4556666666655444443322 46899999975 22 445556666655554 2 346877779999999999
Q ss_pred HHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec-CCCCCcC
Q 015435 86 KLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD-PATRGLN 164 (407)
Q Consensus 86 ~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~d 164 (407)
+++ +. ++++|++ |+|+++++.+++..+ +.+||+|++++|+|..+...++..|.+++.++.+. ++++.+|
T Consensus 72 ~~~-~~-----~~~~v~~--~~g~~~a~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d 141 (381)
T 1v2d_A 72 EEF-AV-----EPESVVV--TSGATEALYVLLQSL--VGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLD 141 (381)
T ss_dssp HHH-TS-----CGGGEEE--ESSHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECC
T ss_pred Hhc-CC-----ChhhEEE--cCChHHHHHHHHHHh--CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcC
Confidence 997 42 2478999 999999999995443 67999999999999999999999999999999841 2347799
Q ss_pred hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435 165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244 (407)
Q Consensus 165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~ 244 (407)
++++++.+. ++++++++ ++|+||||.+++.+++++|+++|++||+++|+|++|.++.++ .. ..++..+ ..+.
T Consensus 142 ~~~l~~~l~--~~~~~v~~-~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g-~~--~~~~~~~--~~~~ 213 (381)
T 1v2d_A 142 LSALEKALT--PRTRALLL-NTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYG-ER--PRRLREF--APER 213 (381)
T ss_dssp HHHHHTTCC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSS-SC--CCCHHHH--CTTT
T ss_pred HHHHHHhcC--cCCEEEEE-CCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccC-CC--CCCHHHh--cCCC
Confidence 999999886 45666666 799999999999999999999999999999999999988762 21 1122222 4568
Q ss_pred EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435 245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR 324 (407)
Q Consensus 245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 324 (407)
++++.|+||.++++|+|+||+ ++ ++++.+.+.. ......++++.+.+.++..+++... +.+++++.+++
T Consensus 214 ~~~~~s~sK~~~~~G~r~G~~--~~-~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~ 282 (381)
T 1v2d_A 214 TFTVGSAGKRLEATGYRVGWI--VG-PKEFMPRLAG----MRQWTSFSAPTPLQAGVAEALKLAR----REGFYEALREG 282 (381)
T ss_dssp EEEEEEHHHHTTCGGGCCEEE--EC-CTTTHHHHHH----HHHHHTSSCCHHHHHHHHHHHHHHH----HTTHHHHHHHH
T ss_pred EEEEeechhhcCCcccceEEE--Ee-CHHHHHHHHH----HHhhcccCCCcHHHHHHHHHHhCcc----cHHHHHHHHHH
Confidence 999999999999999999999 45 4555554433 3333345778888888887776431 12457788899
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCC----------C--eEEecCCCCCCh
Q 015435 325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSD----------G--RISMAGLSSKTV 392 (407)
Q Consensus 325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g----------g--Ris~~~~~~e~i 392 (407)
++++++++.+.|++.+ +.+..+.+++|.|+.+....+.++++++||.+.++ + ||+++. +++++
T Consensus 283 ~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~-~~~~i 357 (381)
T 1v2d_A 283 YRRRRDLLAGGLRAMG----LRVYVPEGTYFLMAELPGWDAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEEL 357 (381)
T ss_dssp HHHHHHHHHHHHHHTT----CCEECCSBSSEEEEECTTCCHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHH
T ss_pred HHHHHHHHHHHHHHCC----CEecCCCcceEEEEecChHhHHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC-CHHHH
Confidence 9999999999999876 67777778888887553211677788899999764 2 999987 88999
Q ss_pred hHHHHHHHHHHHh
Q 015435 393 PHLTDAIHAAVTR 405 (407)
Q Consensus 393 ~~~~~~l~~~l~~ 405 (407)
++++++|++++++
T Consensus 358 ~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 358 HLALERLGRVVNS 370 (381)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998754
No 54
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=7.3e-40 Score=311.85 Aligned_cols=346 Identities=13% Similarity=0.124 Sum_probs=267.2
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
.++++|||+.|.+ +. +.++.+.+++.+.+. ....+|++. ..++++++++++....+..+++++|++ |+|
T Consensus 25 ~g~~~i~~~~~~~---~~-~~~~~v~~a~~~~~~---~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~--~~g 93 (391)
T 3dzz_A 25 LKEKELPMWIAEM---DF-KIAPEIMASMEEKLK---VAAFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVF--ASG 93 (391)
T ss_dssp CCTTCEECCSSCC---SS-CCCHHHHHHHHHHHT---TCCCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEE--ESC
T ss_pred cCCCceeccccCC---CC-CCCHHHHHHHHHHHh---cCcCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEE--CCC
Confidence 3469999999964 44 666677777777665 234567654 689999999998554444455689999 999
Q ss_pred cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEee-cCCCCCcChhhHHHHHHcCCCCcEEEEecCC
Q 015435 109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYY-DPATRGLNFQGLLEDLRAAPSGAIVLLHACA 187 (407)
Q Consensus 109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p 187 (407)
+++++.++++. .+.+||+|+++.|+|.++...++..|.+++.+|+. .+..+.+|++++++++.+ ++++++++ ++|
T Consensus 94 ~~~a~~~~~~~--l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~~v~i-~~p 169 (391)
T 3dzz_A 94 VVPAISAMVRQ--FTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT-PSVRMMVF-CNP 169 (391)
T ss_dssp HHHHHHHHHHH--HSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS-TTEEEEEE-ESS
T ss_pred HHHHHHHHHHH--hCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc-cCceEEEE-ECC
Confidence 99999999544 47799999999999999999999999999999884 233345899999999963 34566655 899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH-HcCCcEEEEEecCccccccCCCcceeE
Q 015435 188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV-ADGGECLVAQSYAKNMGLYGERVGALS 266 (407)
Q Consensus 188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G~~~ 266 (407)
+||||.+++.+++++|+++|++||+++|+|++|.++.+.+.. ..++..+. ...++++++.|+||.+|++|+|+||+
T Consensus 170 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~- 246 (391)
T 3dzz_A 170 HNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDED--ITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACA- 246 (391)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC--CCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEE-
T ss_pred CCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCC--ceehhhcCccccCcEEEEEeChhhccccchhheEE-
Confidence 999999999999999999999999999999999998876421 11221121 11457899999999999999999999
Q ss_pred EeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCc
Q 015435 267 IVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDW 345 (407)
Q Consensus 267 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~ 345 (407)
+++++++.+.+..... ....++++.+++.++..+++... +++++.+++++++++++.+.|++ ++. +
T Consensus 247 -~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~~---~ 313 (391)
T 3dzz_A 247 -IIPNPDLRARAEESFF---LAGIGEPNLLAIPAAIAAYEEGH------DWLRELKQVLRDNFAYAREFLAKEVPE---V 313 (391)
T ss_dssp -ECCSHHHHHHHHHHHH---HHTCSSCCTTHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHCTT---S
T ss_pred -EECCHHHHHHHHHHHH---hhccCCCCHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHhhCCC---c
Confidence 5776776665544221 12234677788888887776532 55778889999999999999998 532 7
Q ss_pred ccccCCceeEEecCC-----CHHHHH-HhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435 346 SHIIKQIGMFTFTGL-----NSEQVA-FMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 346 ~~~~~~~~~~~~~~~-----~~~~~~-~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
.+..+.++++.|+.+ +.+.+. .+++++||.+.+|. ||+++. +++++++++++|+++++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 314 KVLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLAC-PKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp EECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCS-CHHHHHHHHHHHHHHHHTC
T ss_pred EEeccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence 778888998887643 555554 45467999998752 999995 8899999999999999875
No 55
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=100.00 E-value=5.6e-40 Score=315.92 Aligned_cols=356 Identities=14% Similarity=0.132 Sum_probs=262.0
Q ss_pred hhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHh-ccccccccCCCCCCcHHHHHHHHHHHhCCCCCCC
Q 015435 18 ILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLV-NDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAI 96 (407)
Q Consensus 18 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~ 96 (407)
++.....+... ..+|||+.|.+ ++...|.++.+.+++.+.+. .......+|++..|.+++|+++++++ + +
T Consensus 21 ~~~~~~~l~~~--~~~i~l~~g~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~-~-----~ 91 (422)
T 3d6k_A 21 VTAKYAELKAK--NLSLDLTRGKP-SAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEAL-G-----L 91 (422)
T ss_dssp HHHHHHHHHHT--TCCEECCCCSC-CHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHH-T-----C
T ss_pred HHHHHHHHhcc--CCeEeCCCCCC-ChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHh-C-----C
Confidence 44444444432 34899999986 11112444455544433321 01123567988999999999999999 3 3
Q ss_pred CCCceEEeecCCcccHH--HHHHHHHHhhcC------------CCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC
Q 015435 97 KDNRVTTVQCLSGTGSL--RVGAEFLARHYH------------QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG 162 (407)
Q Consensus 97 ~~~~i~~~~t~g~t~a~--~~~~~~~~~~~~------------gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 162 (407)
++++|++ |+|+++++ .++...+ ..+ +|+|++++|+|..+...++..|.+++.+|++ ++ +
T Consensus 92 ~~~~i~~--t~G~~~al~l~~~~~~l--~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~-~~--g 164 (422)
T 3d6k_A 92 PADLVVA--QDGSSLNIMFDLISWSY--TWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMT-DE--G 164 (422)
T ss_dssp CGGGEEE--CSSCHHHHHHHHHHHHH--HHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEE-TT--E
T ss_pred ChhHEEE--ecchHHHHHHHHHHHHh--cCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCC-CC--C
Confidence 4589999 99999997 5553333 334 3479999999999999999999999999994 32 5
Q ss_pred cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHH-HcCceeeecccccc--ccCCCCCchhHHHHHH-
Q 015435 163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMR-SKGLLPFFDSAYQG--FASGSLDADAQSVRMF- 238 (407)
Q Consensus 163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~-~~~~~li~D~~y~~--~~~~~~~~~~~~~~~~- 238 (407)
+|++++++.+.+ .++++++++++||||||.+++.+++++|+++|+ +||+++|+||+|.. +...+. ...++..+
T Consensus 165 ~d~~~l~~~l~~-~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~--~~~~~~~~~ 241 (422)
T 3d6k_A 165 PDMGVVRELVKD-PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFP--IVHNVIEFA 241 (422)
T ss_dssp ECHHHHHHHHTS-TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCC--CCCCHHHHH
T ss_pred CCHHHHHHHHhc-CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCC--CCcChhhHh
Confidence 999999999862 145666756999999999999999999999999 99999999999985 544321 11222222
Q ss_pred --HHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHH
Q 015435 239 --VADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTL 316 (407)
Q Consensus 239 --~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (407)
....+++++++||||. +++|+|+||+ +++ + .+.+.+.........+++.++|.++..++++.. .|.+
T Consensus 242 ~~~~~~~~~i~~~S~SK~-~~~GlriG~~--~~~-~----~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~ 310 (422)
T 3d6k_A 242 QAAGNPNRFWFMSSTSKI-THAGSGVSFF--ASS-K----ENIEWYASHANVRGIGPNKLNQLAHAQFFGDVA---GLKA 310 (422)
T ss_dssp HHTTCTTCEEEEEESTTT-SCTTSSCEEE--ECC-H----HHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHH---HHHH
T ss_pred hccCCCCcEEEEcChhhh-cCcccceEEE--EeC-H----HHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcc---hHHH
Confidence 2345789999999998 7799999999 565 4 455555555555556789999999999998722 3446
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----cCCCCCcccccCCceeEEecCC---CHHHHHHhHhhccEEEcCC----------
Q 015435 317 ELKAMADRIISMRQQLFDALSA----RGTPGDWSHIIKQIGMFTFTGL---NSEQVAFMTKEYHIYMTSD---------- 379 (407)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~g---------- 379 (407)
++++.++.++++++.+.+.|.+ .+. +.+..|.+|+|.|+.+ +.+.+.+++.++||.+.|+
T Consensus 311 ~~~~~~~~~~~~~~~l~~~L~~~l~~~~~---~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~f~~~~~~ 387 (422)
T 3d6k_A 311 HMLKHAASLAPKFERVLEILDSRLSEYGV---AKWTSPTGGYFISVDVVPGTASRVVELAKEAGIALTGAGSSFPLHNDP 387 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGTC---EEECCCSBSSCEEEEESTTCHHHHHHHHHHTTEECCCTTTTSGGGCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCc---eEEeCCCcceEEEEECCCCCHHHHHHHHHHCCeEEEcCccccCCCCCC
Confidence 6778888888888888887765 232 4556778899999865 3566777788899999882
Q ss_pred --C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435 380 --G--RISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 380 --g--Ris~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
+ ||+++..+++++++++++|+++++++
T Consensus 388 ~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 388 NNENIRLAPSLPPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp TSCEEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 88888547899999999999988753
No 56
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=4e-40 Score=312.80 Aligned_cols=341 Identities=8% Similarity=0.084 Sum_probs=264.6
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
.++++|||+.|.+ .. +.++.+.+++.+.+. .....|++. ..++++++++++....+..+++++|++ |+|
T Consensus 22 ~~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~---~~~~~y~~~--~~~~~~~l~~~l~~~~g~~~~~~~v~~--~~g 90 (383)
T 3kax_A 22 KNEELIHAWIADM---DF-EVPQPIQTALKKRIE---HPIFGYTLP--PENIGDIICNWTKKQYNWDIQKEWIVF--SAG 90 (383)
T ss_dssp SSSCCEECCCSSC---SS-CCCHHHHHHHHHHHH---SCCCCCCCC--CTTHHHHHHHHHHHHHCCCCCGGGEEE--ESC
T ss_pred CCCCeeecccccC---CC-CCCHHHHHHHHHHHh---cCCCCCCCC--CHHHHHHHHHHHHHHhCCCCChhhEEE--cCC
Confidence 4579999999964 33 656677777777665 224557554 678899999988544443455689999 999
Q ss_pred cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCC-CCCcChhhHHHHHHcCCCCcEEEEecCC
Q 015435 109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPA-TRGLNFQGLLEDLRAAPSGAIVLLHACA 187 (407)
Q Consensus 109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~i~~~~~~~~v~i~~~p 187 (407)
+++++.++++. .+.+||+|+++.|+|.++...++..|.+++.+++..+. .+.+|++++++.+. ++++++++ ++|
T Consensus 91 ~~~a~~~~~~~--l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~--~~~~~v~i-~~p 165 (383)
T 3kax_A 91 IVPALSTSIQA--FTKENESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQ--QGVKLMLL-CSP 165 (383)
T ss_dssp HHHHHHHHHHH--HCCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHT--TTCCEEEE-ESS
T ss_pred HHHHHHHHHHH--hCCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHhC--cCCeEEEE-eCC
Confidence 99999999543 47799999999999999999999999999999984222 24589999999995 66778777 899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH-HcCCcEEEEEecCccccccCCCcceeE
Q 015435 188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV-ADGGECLVAQSYAKNMGLYGERVGALS 266 (407)
Q Consensus 188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G~~~ 266 (407)
+||||++++.+++++|+++|++||+++|+||+|.++.+.+.. ..++..+. +..++++++.|+||.++++|+|+||+
T Consensus 166 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~- 242 (383)
T 3kax_A 166 HNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHT--HTPFASLSEELAARTITCMAPSKTFNIAGLQASII- 242 (383)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEE-
T ss_pred CCCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCC--ceeHhhcCccccCcEEEEEEChhhccCcchhheEE-
Confidence 999999999999999999999999999999999998876421 11111111 11368899999999999999999999
Q ss_pred EeecChhhHHHHHHHHhhhhhcc-cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCC
Q 015435 267 IVCKTEDVASRVESQLKLVIRPM-YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGD 344 (407)
Q Consensus 267 ~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~ 344 (407)
+++++++.+.+.. ..... ..+++.+++.++..+++... +++++.+++++++++++.+.|++ ++.
T Consensus 243 -~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~~--- 308 (383)
T 3kax_A 243 -IIPNEKLRQAFTS----IQYRQGFHGLNIFAYTAMQSAYTECN------DWLNEIRFYIEDNAKFACEYIKDHIPT--- 308 (383)
T ss_dssp -ECCCHHHHHHHHH----HHHHTTCCCCCHHHHHHHHHHTTTCH------HHHHHHHHHHHHHHHHHHHHHHHHCTT---
T ss_pred -EeCCHHHHHHHHH----HHhhcccCCCCHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHhhCCC---
Confidence 5766665554433 33222 33788889999988888643 55778889999999999999988 432
Q ss_pred cccccCCceeEEecCC-----CHHHHH-HhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHH
Q 015435 345 WSHIIKQIGMFTFTGL-----NSEQVA-FMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 345 ~~~~~~~~~~~~~~~~-----~~~~~~-~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l 403 (407)
+.+..+.++++.|+.+ +.+.+. .+++++||.+.+| + ||+++. +++++++++++|++++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 309 LSVMKPEGSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGC-PRSVLEEILNRLRHTF 382 (383)
T ss_dssp CEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECSS-CHHHHHHHHHHHHHHH
T ss_pred ceEecCCceEEEEEEccccCCCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 7778888999887743 455544 5555799999885 2 999996 8899999999999876
No 57
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=3.3e-39 Score=303.27 Aligned_cols=330 Identities=16% Similarity=0.215 Sum_probs=260.2
Q ss_pred hhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435 26 NKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ 105 (407)
Q Consensus 26 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~ 105 (407)
....++++|||+.|.+ ..+.++.+.+++.+.+. ....| |..+.+++|+++++++ + +++++|++
T Consensus 11 ~~~~~~~~i~l~~~~~----~~~~~~~v~~a~~~~~~----~~~~y-~~~~~~~l~~~la~~~-~-----~~~~~i~~-- 73 (354)
T 3ly1_A 11 TAPSTDNPIRINFNEN----PLGMSPKAQAAARDAVV----KANRY-AKNEILMLGNKLAAHH-Q-----VEAPSILL-- 73 (354)
T ss_dssp CCCCSSSCEECSSCCC----SSCCCHHHHHHHHHTGG----GTTSC-CHHHHHHHHHHHHHHT-T-----SCGGGEEE--
T ss_pred cCCCCCceEEccCCCC----CCCCCHHHHHHHHHHHh----hCcCC-CCCchHHHHHHHHHHh-C-----CChHHEEE--
Confidence 3456789999999973 22455566666555553 25567 5678899999999998 4 23589999
Q ss_pred cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEec
Q 015435 106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185 (407)
Q Consensus 106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~ 185 (407)
|+|+++++.+++.. .+.+||+|+++.|+|.++...++..|.+++.++.+ .++++|++++++.+.+.++++++++ +
T Consensus 74 ~~g~~~a~~~~~~~--l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~l~~~~~~~~v~l-~ 148 (354)
T 3ly1_A 74 TAGSSEGIRAAIEA--YASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKML--DNWAFDIEGLKAAVAAYSGPSIVYL-V 148 (354)
T ss_dssp ESHHHHHHHHHHHH--HCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCC--TTSCCCHHHHHHHHHTCSSCEEEEE-E
T ss_pred eCChHHHHHHHHHH--HhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHHHhccCCCCCEEEE-e
Confidence 99999999999533 36899999999999999999999999999999983 3588999999999985345677777 8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC-CcEEEEEecCccccccCCCcce
Q 015435 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG-GECLVAQSYAKNMGLYGERVGA 264 (407)
Q Consensus 186 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~s~sK~~~~~G~r~G~ 264 (407)
+|+||||.+++.+++++|+++| +||+++|+|++|.++.+++...... ...... +++++++|+||.+|++|+|+||
T Consensus 149 ~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~s~sK~~g~~G~r~G~ 224 (354)
T 3ly1_A 149 NPNNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSIS---PMITQGAENIILLKTFSKIHAMAGMRVGY 224 (354)
T ss_dssp SSCTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSH---HHHHTTCSSEEEEEESSSTTCCGGGCCEE
T ss_pred CCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHH---HHhhhcCCCEEEEeeChhhccChhhhhee
Confidence 9999999999999999999999 8999999999999988764221211 222334 7889999999999999999999
Q ss_pred eEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015435 265 LSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGD 344 (407)
Q Consensus 265 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 344 (407)
+ +++ +.+.+.+...... ++++.+++.++..++++. +++++.+++++++++++.+.|++.+
T Consensus 225 ~--~~~-----~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~---- 284 (354)
T 3ly1_A 225 A--VAH-----PTVIALMGRYVAG--EKINFSGVDAALASMNDS-------AFITYSKKSNDVSRQILLKALEDLK---- 284 (354)
T ss_dssp E--ECC-----HHHHHHHGGGTTC--SCCCHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred e--ecC-----HHHHHHHHHhcCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----
Confidence 9 464 4455556555443 488899999999999865 4577888999999999999999886
Q ss_pred cccccCCceeEEecCC--CHHHHHHhHhhccEEEcCC------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435 345 WSHIIKQIGMFTFTGL--NSEQVAFMTKEYHIYMTSD------G--RISMAGLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 345 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~g------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 405 (407)
+.+.++. +.|.|+.+ +.+.+.+.|.++||.+. | + ||+++ +++++++++++|++++++
T Consensus 285 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 285 LPYLPSE-GNFVFHQLVVPLKDYQTHMADAGVLIG-RAFPPADNWCRISLG--TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CCBCCCC-SSEEEEECSSCHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred CeECCCC-ceEEEEECCCCHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 5655554 45677766 45666666666899988 3 1 89977 678999999999999875
No 58
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=100.00 E-value=4.1e-40 Score=324.85 Aligned_cols=346 Identities=15% Similarity=0.112 Sum_probs=266.3
Q ss_pred CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCC-CCCCcHHHHHHHHHHHhCC-CC-CCCC-CCceEEeecC
Q 015435 32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYL-PIVGLVDFNKLSAKLILGA-DS-PAIK-DNRVTTVQCL 107 (407)
Q Consensus 32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~g~~~l~~~~a~~~~~~-~~-~~~~-~~~i~~~~t~ 107 (407)
++|+|+.|.+ .. + +++++.++.+++. . ..|. +..|.+++|+.+++++... .+ ..+. +++|++ |+
T Consensus 104 ~~i~l~~g~~---~~-~-~~~~v~a~~~~~~--~---~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~--t~ 171 (533)
T 3f6t_A 104 DAVNYCHTEL---GL-N-RDKVVAEWVNGAV--A---NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFP--TE 171 (533)
T ss_dssp HHHHHHHHTT---CC-C-HHHHHHHHHHHHH--T---CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEE--EE
T ss_pred hheeccCCCC---Cc-C-CcHHHHHHHHHHH--h---CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEE--EC
Confidence 4789999975 33 3 6678888877775 1 2454 7889999999999999332 12 2233 479999 99
Q ss_pred CcccHHHHHHHHHH---hhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec--CCCCCcChhhHHHHHHcCCCCcEEE
Q 015435 108 SGTGSLRVGAEFLA---RHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD--PATRGLNFQGLLEDLRAAPSGAIVL 182 (407)
Q Consensus 108 g~t~a~~~~~~~~~---~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~--~~~~~~d~~~l~~~i~~~~~~~~v~ 182 (407)
|+++++.+++..+. .+.+||+|+++.|+|.++...++..|.+++.+++.. +.++++|++++++++. +++++++
T Consensus 172 G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~--~~~k~v~ 249 (533)
T 3f6t_A 172 GGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD--PSIKALI 249 (533)
T ss_dssp HHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSC--TTEEEEE
T ss_pred CHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhC--CCCeEEE
Confidence 99999999954311 467999999999999999999999999999998853 4568899999999886 5677777
Q ss_pred EecCCCCCCCCCCCHHHHHHHHHHHH-HcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC
Q 015435 183 LHACAHNPTGVDPTLEQWEQIRQLMR-SKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER 261 (407)
Q Consensus 183 i~~~p~NPtG~~~~~~~l~~i~~~~~-~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 261 (407)
+ ++|+||||.+++.+++++|+++|+ +||+++|+||+|.++.++.. ++.. ...+++++++||||.+|++|+|
T Consensus 250 l-~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~-----~~~~--~~~~~~i~~~S~SK~~g~~G~R 321 (533)
T 3f6t_A 250 V-VNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFK-----SIYS--VVPYNTMLVYSYSKLFGCTGWR 321 (533)
T ss_dssp E-ESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCC-----CHHH--HSGGGEEEEEESHHHHTCGGGC
T ss_pred E-eCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCcc-----CHhh--cCCCCEEEEecCcccCCCcccc
Confidence 7 699999999999999999999999 58999999999999887521 1211 2246899999999999999999
Q ss_pred cceeEEeecChhhHHHHHHHH--------------------------------hhhhhcccCCCChhHHHH----HHHHh
Q 015435 262 VGALSIVCKTEDVASRVESQL--------------------------------KLVIRPMYSSPPIHGASI----VATIL 305 (407)
Q Consensus 262 ~G~~~~v~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~----~~~~l 305 (407)
+||+ +++++.+.++++..+ .......+.+++.+.|.+ +...+
T Consensus 322 iG~l--~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L 399 (533)
T 3f6t_A 322 LGVI--ALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHL 399 (533)
T ss_dssp EEEE--EEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHH
T ss_pred eEEE--EECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHH
Confidence 9999 677665555554433 334444555778888877 44455
Q ss_pred cChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC---------------------HHH
Q 015435 306 KDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN---------------------SEQ 364 (407)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 364 (407)
....-.+.+.+++++.+++++++++++.+.|+ .+ +.+..+.+++|.|+++. .++
T Consensus 400 ~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~----~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~ 474 (533)
T 3f6t_A 400 LTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-AP----KDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDF 474 (533)
T ss_dssp TTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CC----CCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHH
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CC----ccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHH
Confidence 31000001236678889999999999999997 65 67778899999997553 245
Q ss_pred HHHhHhhccEEEcCC-------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435 365 VAFMTKEYHIYMTSD-------G--RISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 365 ~~~~l~~~gi~~~~g-------g--Ris~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
+.++++++||.+.|| + |||++.++++++++++++|+++++++
T Consensus 475 ~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~ 525 (533)
T 3f6t_A 475 LLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKEY 525 (533)
T ss_dssp HHHHHHHTTSSSCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHHH
Confidence 678888899999986 2 99998778899999999999998753
No 59
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=2.6e-39 Score=308.04 Aligned_cols=339 Identities=9% Similarity=0.076 Sum_probs=260.4
Q ss_pred CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435 30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG 109 (407)
Q Consensus 30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~ 109 (407)
+.++|||+.|.+ .. +.++.+.+++.+.+. ...+.|.+ +..++++++++++....+..+++++|++ |+|+
T Consensus 31 ~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~---~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~--~~g~ 99 (391)
T 4dq6_A 31 TNDLLPMWVADM---DF-KAAPCIIDSLKNRLE---QEIYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIY--SPGV 99 (391)
T ss_dssp CSCSEECCSSSC---SS-CCCHHHHHHHHHHHT---TCCCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESCH
T ss_pred CCCceeccccCC---CC-CCCHHHHHHHHHHHh---CCCCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEE--cCCh
Confidence 478999999963 33 666677777767664 22445654 5689999999998544444455689999 9999
Q ss_pred ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEee--cCCCCCcChhhHHHHHHcCCCCcEEEEecCC
Q 015435 110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYY--DPATRGLNFQGLLEDLRAAPSGAIVLLHACA 187 (407)
Q Consensus 110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~--~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p 187 (407)
++++.++++ ..+.+||+|+++.|+|.++...++..|.+++.+|++ ++.++.+|++++++++. + ++++++ ++|
T Consensus 100 ~~a~~~~~~--~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~--~-~~~v~i-~~p 173 (391)
T 4dq6_A 100 IPAISLLIN--ELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIK--D-VKLFIL-CNP 173 (391)
T ss_dssp HHHHHHHHH--HHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCT--T-EEEEEE-ESS
T ss_pred HHHHHHHHH--HhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh--c-CCEEEE-ECC
Confidence 999999954 347799999999999999999999999999999985 23345689999999997 4 566555 899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH-HcCCcEEEEEecCccccccCCCcceeE
Q 015435 188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV-ADGGECLVAQSYAKNMGLYGERVGALS 266 (407)
Q Consensus 188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G~~~ 266 (407)
+||||.+++.+++++|+++|++||+++|+||+|.++.+++... .++..+. +..++++++.|+||.+|++|+|+||+
T Consensus 174 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~--~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~- 250 (391)
T 4dq6_A 174 HNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKH--IPMASISKEFEKNTITCMAPTKTFNIAGLQSSYV- 250 (391)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCC--CCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEE-
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCc--cCHHHcCccccCcEEEEEechhhccCcccceEEE-
Confidence 9999999999999999999999999999999999988764211 1111111 11357899999999999999999999
Q ss_pred EeecChhhHHHHHHHHhhhhhc-ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCC
Q 015435 267 IVCKTEDVASRVESQLKLVIRP-MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGD 344 (407)
Q Consensus 267 ~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~ 344 (407)
+++++++.+.+.. .... ...+++.+++.++..+++... +++++.+++++++++++.+.|++ .+.
T Consensus 251 -~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~~--- 316 (391)
T 4dq6_A 251 -VLPDEKDYKLLDD----AFTRIDIKRNNCFSLVATEASYNNGE------SWLESFLEYLESNIDFAIKYINENMPK--- 316 (391)
T ss_dssp -ECCSHHHHHHHHH----HHHHTTCCCCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHCTT---
T ss_pred -EeCCHHHHHHHHH----HHHhhcCCCCCHHHHHHHHHHHhchH------HHHHHHHHHHHHHHHHHHHHHHhhCCC---
Confidence 6776565555443 3222 234678888888887776432 45778889999999999999987 432
Q ss_pred cccccCCceeEEecCC-----CHHHHH-HhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHH
Q 015435 345 WSHIIKQIGMFTFTGL-----NSEQVA-FMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 345 ~~~~~~~~~~~~~~~~-----~~~~~~-~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l 403 (407)
+.+..+.++++.|+.+ +.+.+. .+++++||.+.|| + ||+++. +++++++++++|++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 317 LKVRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLAC-PRSMLEEALIRIKNAI 390 (391)
T ss_dssp SEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCS-CHHHHHHHHHHHHHHH
T ss_pred CEecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 7778888999887744 455544 4555459999875 2 999995 8899999999999876
No 60
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=1.5e-39 Score=312.78 Aligned_cols=343 Identities=13% Similarity=0.101 Sum_probs=266.5
Q ss_pred CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435 30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG 109 (407)
Q Consensus 30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~ 109 (407)
++++|||++|.+ ++ +.++.+++++.+++. . ..+.|.+. ..++++++++++....+..+++++|++ |+|+
T Consensus 60 g~~~i~~~~~~~---~~-~~~~~v~~a~~~~~~--~-~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~~--~~g~ 128 (421)
T 3l8a_A 60 NPELLQMWVADM---DF-LPVPEIKEAIINYGR--E-HIFGYNYF--NDDLYQAVIDWERKEHDYAVVKEDILF--IDGV 128 (421)
T ss_dssp CTTCEECCSSCC---CS-CCCHHHHHHHHHHHH--H-CCSSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEE--ESCH
T ss_pred CCCeeecccCCC---CC-CCCHHHHHHHHHHHh--c-CCcCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEE--cCCH
Confidence 679999999964 54 667777777777775 2 34556543 378999999998554444456689999 9999
Q ss_pred ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEee-cCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435 110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYY-DPATRGLNFQGLLEDLRAAPSGAIVLLHACAH 188 (407)
Q Consensus 110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~ 188 (407)
+++++++++.+ +.+||+|+++.|+|.++...++..|.+++.+|+. .+..+.+|++++++++.+ ++++++++ ++|+
T Consensus 129 ~ea~~~a~~~~--~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~-~~~~~vil-~~p~ 204 (421)
T 3l8a_A 129 VPAISIALQAF--SEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID-NNVKIYLL-CSPH 204 (421)
T ss_dssp HHHHHHHHHHH--SCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH-TTEEEEEE-ESSB
T ss_pred HHHHHHHHHHh--cCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc-cCCeEEEE-CCCC
Confidence 99999996444 6799999999999999999999999999999985 233456899999999973 34566666 8999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHH-HcCCcEEEEEecCccccccCCCcceeEE
Q 015435 189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFV-ADGGECLVAQSYAKNMGLYGERVGALSI 267 (407)
Q Consensus 189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 267 (407)
||||.+++.+++++|+++|++||++||+||+|.++.+.+... .++..+. +..+.++++.|+||.++++|+|+||+
T Consensus 205 nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~--~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~-- 280 (421)
T 3l8a_A 205 NPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTH--HSLNTLDASYKDFTIILSSATKTFNIAGTKNSFA-- 280 (421)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC--CCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEE--
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC--ccHHHcCchhcCcEEEEEeChhhccCchhheEeE--
Confidence 999999999999999999999999999999999998865321 1221111 22467899999999999999999999
Q ss_pred eecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 015435 268 VCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH 347 (407)
Q Consensus 268 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 347 (407)
+++++++.+.+..... .....+++.+++.++..+++... +++++.+++++++++++.+.|++.+. +.+
T Consensus 281 ~~~~~~l~~~~~~~~~---~~~~~~~n~~~~~a~~aal~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~---i~~ 348 (421)
T 3l8a_A 281 IIQNESLRRKFQYRQL---ANNQHEVPTVGMIATQAAFQYGK------PWLEELKTVIEGNIKLVIKELEAKTK---IKV 348 (421)
T ss_dssp ECCSHHHHHHHHHHHH---HTTCSCCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHCS---CEE
T ss_pred EcCCHHHHHHHHHHHH---hcccCCCCHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHhCCC---ceE
Confidence 6776776665544221 22234788888988888877432 55778889999999999999988622 777
Q ss_pred ccCCceeEEecCC-----CH-HHHHHhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHHH
Q 015435 348 IIKQIGMFTFTGL-----NS-EQVAFMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAVT 404 (407)
Q Consensus 348 ~~~~~~~~~~~~~-----~~-~~~~~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l~ 404 (407)
..+.++++.|+.+ +. ++...+++++||.+.+| + ||+++. +++++++++++|+++++
T Consensus 349 ~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 349 MEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVAT-PKNTVQEALSRIISVFG 420 (421)
T ss_dssp ECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHC-
T ss_pred eCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 8889999988754 33 34556667789999874 2 999995 88999999999998875
No 61
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=100.00 E-value=2e-38 Score=299.27 Aligned_cols=324 Identities=12% Similarity=0.074 Sum_probs=254.1
Q ss_pred CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435 30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG 109 (407)
Q Consensus 30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~ 109 (407)
.+++|||+.|.+ .. +.++.+++++.+.+. ....|++..+ .++|+++++++ + +++++|++ |+|+
T Consensus 29 ~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~----~~~~y~~~~~-~~lr~~la~~~-~-----~~~~~v~~--~~g~ 91 (365)
T 3get_A 29 VKEVIKLASNEN---PF-GTPPKAIECLRQNAN----KAHLYPDDSM-IELKSTLAQKY-K-----VQNENIII--GAGS 91 (365)
T ss_dssp CSCCEECSSCCC---TT-CSCHHHHHHHHHHGG----GTTSCCCTTC-HHHHHHHHHHH-T-----CCGGGEEE--ESSH
T ss_pred CCceEEecCCCC---CC-CCCHHHHHHHHHHHH----hhccCCCCCh-HHHHHHHHHHh-C-----CCcceEEE--CCCH
Confidence 378999999974 22 445566666655553 3566866555 89999999998 4 23589999 9999
Q ss_pred ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435 110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN 189 (407)
Q Consensus 110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N 189 (407)
++++.+++. ..+.+||+|+++.|+|..+...++..|.+++.+++ +++++ +|++++++.+. ++++++++ ++|+|
T Consensus 92 ~~a~~~~~~--~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l~--~~~~~v~~-~~p~n 164 (365)
T 3get_A 92 DQVIEFAIH--SKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETHK--DEIKLIFL-CLPNN 164 (365)
T ss_dssp HHHHHHHHH--HHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHTT--TTEEEEEE-ESSCT
T ss_pred HHHHHHHHH--HHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHhC--CCCCEEEE-cCCCC
Confidence 999999953 34789999999999999999999999999999988 34567 99999999987 56777777 89999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccC--CCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEE
Q 015435 190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS--GSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSI 267 (407)
Q Consensus 190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 267 (407)
|||.+++.+++.+|+++| ++|+++|+|++|.++.+ .+. ...+........+++++++|+||.++++|+|+||+
T Consensus 165 ptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~-- 239 (365)
T 3get_A 165 PLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSK--KHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYG-- 239 (365)
T ss_dssp TTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGG--GCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEE--
T ss_pred CCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCc--ccccHhHHhccCCCEEEEeecchHhcCcchheEEE--
Confidence 999999999999999999 67999999999998874 221 11222223345678999999999999999999999
Q ss_pred eecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 015435 268 VCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH 347 (407)
Q Consensus 268 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 347 (407)
++ +++ +.+.+...... ++++.+++.++..++++. +++++.+++++++++++.+.|++.+ +.+
T Consensus 240 ~~-~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~g----~~~ 301 (365)
T 3get_A 240 IA-NAN----IISAFYKLRAP--FNVSNLALKAAVAAMDDD-------EFTEKTLENNFSQMELYKEFAKKHN----IKI 301 (365)
T ss_dssp EE-CHH----HHHHHHHHSCT--TCSCHHHHHHHHHHHTCH-------HHHHHHHHHHHHHHHHHHHHHHHTT----CEE
T ss_pred Ec-CHH----HHHHHHHhcCC--CCcCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHhCC----CEE
Confidence 56 444 44444444433 368889999999999864 5577888999999999999999886 666
Q ss_pred ccCCceeEEecCC---CHHHHHHhHhhccEEEcCCC-------eEEecCCCCCChhHHHHHHHHHH
Q 015435 348 IIKQIGMFTFTGL---NSEQVAFMTKEYHIYMTSDG-------RISMAGLSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 348 ~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~gg-------Ris~~~~~~e~i~~~~~~l~~~l 403 (407)
..+.++ |.|+.+ +.+.+.+.|.++||.+.+|. ||+++ +++++++++++|++++
T Consensus 302 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~--~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 302 IDSYTN-FITYFFDEKNSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG--TSYENEKFFTEFDKIL 364 (365)
T ss_dssp CCCSSS-EEEEECSSSCHHHHHHHHHTTTEECEECGGGTCSEEEEECC--CHHHHHHHHHHHHHHH
T ss_pred CCCCCe-EEEEECCCCCHHHHHHHHHHCCEEEEECccCCCCEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 666554 567655 56666666666899998862 89887 6789999999999876
No 62
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=100.00 E-value=1.3e-38 Score=301.58 Aligned_cols=313 Identities=16% Similarity=0.142 Sum_probs=251.5
Q ss_pred HHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCC
Q 015435 55 RKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQP 134 (407)
Q Consensus 55 ~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p 134 (407)
+++.+.+. ....+|.+..|..++|+++++++.+ ++++++++ |+|+++++.+++ ...+.+||+|+++.|
T Consensus 46 ~~~~~~~~---~~~~~y~~~~g~~~l~~~la~~~~~-----~~~~~v~~--~~g~~~a~~~~~--~~l~~~gd~Vl~~~~ 113 (375)
T 3op7_A 46 EDFYKKLQ---GTKLNYGWIEGSPAFKKSVSQLYTG-----VKPEQILQ--TNGATGANLLVL--YSLIEPGDHVISLYP 113 (375)
T ss_dssp HHHHHHHH---TSCCSSCCTTCCHHHHHHHHTTSSS-----CCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEES
T ss_pred HHHHHHHh---cCCcCCCCCCChHHHHHHHHHHhcc-----CChhhEEE--cCChHHHHHHHH--HHhcCCCCEEEEeCC
Confidence 45555554 3456798999999999999998732 34589999 999999999995 344789999999999
Q ss_pred CCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCcee
Q 015435 135 TWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLP 214 (407)
Q Consensus 135 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l 214 (407)
+|.++...++..|.+++.++++.+.++.+|++++++++. ++++++++ ++|+||||.+++.+++++|+++|++||+++
T Consensus 114 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--~~~~~v~~-~~~~nptG~~~~~~~l~~i~~la~~~~~~l 190 (375)
T 3op7_A 114 TYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIR--PTTKMICI-NNANNPTGAVMDRTYLEELVEIASEVGAYI 190 (375)
T ss_dssp SCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC--TTCCEEEE-ESSCTTTCCCCCHHHHHHHHHHHHTTTCEE
T ss_pred CchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhc--cCCeEEEE-cCCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 999999999999999999999645556789999999987 56788777 799999999999999999999999999999
Q ss_pred eeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCC
Q 015435 215 FFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPP 294 (407)
Q Consensus 215 i~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (407)
|+||+|..+.+.+. .+. ....+++++++||||.++++|+|+||+ ++ ++ ++.+.+.........+++
T Consensus 191 i~De~~~~~~~~~~----~~~---~~~~~~~i~~~s~sK~~~~~G~r~G~v--~~-~~----~l~~~~~~~~~~~~~~~~ 256 (375)
T 3op7_A 191 LSDEVYRSFSELDV----PSI---IEVYDKGIAVNSLSKTYSLPGIRIGWV--AA-NH----QVTDILRDYRDYTMICAG 256 (375)
T ss_dssp EEECCSCCCSSSCC----CCH---HHHCTTEEEEEESSSSSSCGGGCCEEE--EC-CH----HHHHHHTTTGGGTTSCCC
T ss_pred EEEcccccccccCC----Cch---hhhcCCEEEEeEChhhcCCcccceEEE--Ee-CH----HHHHHHHHHHhhhccCCC
Confidence 99999999887521 111 233567899999999999999999999 56 44 455556656555566778
Q ss_pred hhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecC----CCHH-HHHHhH
Q 015435 295 IHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTG----LNSE-QVAFMT 369 (407)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~l 369 (407)
.+.+.++...++.. .+.+++.+++++++++++.+.|++.+. +.+..+.++++.|+. .+.+ .+.+++
T Consensus 257 ~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 327 (375)
T 3op7_A 257 VFDDLVAQLALAHY------QEILERNRHILEENLAILDQWIEEEPL---VSYIRPAVVSTSFVKIAVDMPMEDFCLQLL 327 (375)
T ss_dssp HHHHHHHHHHHHTH------HHHHHHHHHHHHHHHHHHHHHHHHCTT---EEECCCSSSSCEEEEECCSSCHHHHHHHHH
T ss_pred cHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHhhCCC---ceEecCCCeEEEeEEcCCCCCHHHHHHHHH
Confidence 88888888777753 255778888899999999999988642 677777787776653 2443 456777
Q ss_pred hhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435 370 KEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 370 ~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
+++||.+.||. ||+++. +++++++++++|+++++++
T Consensus 328 ~~~gi~v~~g~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~~~ 371 (375)
T 3op7_A 328 QEHGVLLVPGNRFERDGYVRLGFAC-EQETLIKGLEKLSQFLRRF 371 (375)
T ss_dssp HHHCEECEEGGGGTCTTEEEECCCS-CHHHHHHHHHHHHHHHGGG
T ss_pred HhCCEEEeChhhhCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence 88999998862 899886 6688999999999998764
No 63
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=5.6e-38 Score=296.40 Aligned_cols=330 Identities=18% Similarity=0.163 Sum_probs=260.1
Q ss_pred hhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435 25 YNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV 104 (407)
Q Consensus 25 ~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~ 104 (407)
+.....+++|||+.|.+ .. +.++.+.+++.+.+. ......|+. .+..++|+++++++ +.. ++++|++
T Consensus 24 ~~~~~~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~~~~~~y~~-~~~~~l~~~la~~~-g~~----~~~~i~~- 90 (367)
T 3euc_A 24 YHVPDSHGLVKLDAMEN---PY-RLPPALRSELAARLG--EVALNRYPV-PSSEALRAKLKEVM-QVP----AGMEVLL- 90 (367)
T ss_dssp SSCCCCTTCEECCSSCC---CC-CCCHHHHHHHHHHHH--HHHTTCSCC-CCHHHHHHHHHHHH-TCC----TTCEEEE-
T ss_pred CCCCCCCCeeEccCCCC---CC-CCCHHHHHHHHHHhh--hhhhhcCCC-CcHHHHHHHHHHHh-CCC----CcceEEE-
Confidence 33344578999999973 33 556677777666664 223566754 68999999999998 431 3579999
Q ss_pred ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEe
Q 015435 105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH 184 (407)
Q Consensus 105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~ 184 (407)
|+|+++++.+++ ...+.+||+|+++.|+|.++...++..|.+++.+|.+ .++.+|++++++.+.+. +++++++
T Consensus 91 -~~g~t~a~~~~~--~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~v~~- 163 (367)
T 3euc_A 91 -GNGSDEIISMLA--LAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLR--ADFTLDRGAMLAAMAEH-QPAIVYL- 163 (367)
T ss_dssp -EEHHHHHHHHHH--HHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECC--TTSCCCHHHHHHHHHHH-CCSEEEE-
T ss_pred -cCCHHHHHHHHH--HHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCC--CCCCCCHHHHHHHhhcc-CCCEEEE-
Confidence 999999999995 3446799999999999999999999999999999983 36789999999999831 5778777
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHc--CceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc
Q 015435 185 ACAHNPTGVDPTLEQWEQIRQLMRSK--GLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV 262 (407)
Q Consensus 185 ~~p~NPtG~~~~~~~l~~i~~~~~~~--~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 262 (407)
++||||||.+++.+++++|+++|++| |+++|+|++|.++...+. .. .....++++++.|+||. +++|+|+
T Consensus 164 ~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~---~~----~~~~~~~~i~~~s~sK~-~~~G~r~ 235 (367)
T 3euc_A 164 AYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESW---MS----RLTDFGNLLVMRTVSKL-GLAGIRL 235 (367)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCS---GG----GGGTCTTEEEEEECCCT-TSCSCCE
T ss_pred cCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccch---HH----HHhhCCCEEEEecchhh-cccccCc
Confidence 79999999999999999999999999 999999999998875421 11 12345688999999999 9999999
Q ss_pred ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015435 263 GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTP 342 (407)
Q Consensus 263 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 342 (407)
||+ +++ +.+.+.+..... .++++.+++.++..+++.. +++++.+++++++++++.+.|++.+.
T Consensus 236 G~~--~~~-----~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~g- 298 (367)
T 3euc_A 236 GYV--AGD-----PQWLEQLDKVRP--PYNVNVLTEATALFALEHV-------AVLDEQAAQLRAERSRVAEGMAAHGG- 298 (367)
T ss_dssp EEE--EEC-----HHHHHHHGGGCC--SSCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHHHHTSTT-
T ss_pred eee--eeC-----HHHHHHHHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHhCCC-
Confidence 999 565 445555554443 3478889999999999873 55778889999999999999998732
Q ss_pred CCcccccCCceeEEecCC-CHHHHHHhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHHH
Q 015435 343 GDWSHIIKQIGMFTFTGL-NSEQVAFMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAVT 404 (407)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l~ 404 (407)
+.+. +..+.|.|+.+ +.+.+.+.|.++||.+.+++ ||+++ +++++++++++|+++++
T Consensus 299 --~~~~-~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 299 --VTVF-PSAANFLLARVPDAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS--TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp --CEEC-CCSSSEEEEECSCHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred --cEEC-CCCCeEEEEECCCHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC--CHHHHHHHHHHHHHHhc
Confidence 5644 44556777766 56666666778999998752 88877 78899999999998764
No 64
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=100.00 E-value=4.6e-39 Score=309.07 Aligned_cols=367 Identities=13% Similarity=0.110 Sum_probs=250.7
Q ss_pred ccccccCCCCCchhhhhHhhh-hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc---cccccCCCCCCcHHHH
Q 015435 6 VFGKIVRAPEDPILGVTVAYN-KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ---SRVKEYLPIVGLVDFN 81 (407)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~y~~~~g~~~l~ 81 (407)
++.+.. .+..+...++.+. ...++++|||+.|.| +..|.+.+.+.+.+..+..+. ....+|.+..|.+++|
T Consensus 7 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr 81 (417)
T 3g7q_A 7 FGDKFT--RHSGITRLMEDLNDGLRTPGAIMLGGGNP---AHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALL 81 (417)
T ss_dssp -----------CHHHHHHHHHC-----CCEECSCCCC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHH
T ss_pred hhhhhh--ccccHHHHHHHHHhhccCCCceEecCcCC---CCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHH
Confidence 444433 3445666665554 335589999999986 332433345555444443111 1234799999999999
Q ss_pred HHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCC-----eEEec-CCCCCChHHHHh------hcCce
Q 015435 82 KLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQL-----TIYIP-QPTWGNHPKVFT------LAGLS 149 (407)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd-----~Vi~~-~p~y~~~~~~~~------~~G~~ 149 (407)
+++++++...++..+++++|++ |+|+++++.++++.+ +.+|| +|+++ +|+|.++...+. ..+..
T Consensus 82 ~~ia~~~~~~~g~~~~~~~i~~--t~G~t~al~~~~~~l--~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~ 157 (417)
T 3g7q_A 82 NALAVLLRETLGWDIEPQNIAL--TNGSQSAFFYLFNLF--AGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPN 157 (417)
T ss_dssp HHHHHHHHHHHCCCCCGGGEEE--ESCHHHHHHHHHHHH--SBC----CCBEEEESSCCCHHHHHC-----CCEEECCCE
T ss_pred HHHHHHHHHHhCCCCCcccEEE--eCCcHHHHHHHHHHH--cCCCccCCcceEEEeCCCccccchhhccchhhhccccCc
Confidence 9999999554455567799999 999999999995444 67877 89997 999998877653 22333
Q ss_pred eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435 150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD 229 (407)
Q Consensus 150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~ 229 (407)
+..++.. ..++.+|+++++ +. ++++++++ ++||||||.+++.+++++|+++|++||+++|+||+|..+... ..
T Consensus 158 ~~~~~~~-~~~~~~d~~~l~--~~--~~~~~v~~-~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~-~~ 230 (417)
T 3g7q_A 158 IELLPEG-QFKYHVDFEHLH--IG--EETGMICV-SRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPG-II 230 (417)
T ss_dssp EEEEGGG-EEEEECCGGGCC--CC--TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTC-CB
T ss_pred ccccCCc-ccccccCHHHhc--cc--cCceEEEE-CCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccc-cc
Confidence 4334321 113568999887 43 45566555 999999999999999999999999999999999999754321 00
Q ss_pred chhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChh
Q 015435 230 ADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDST 309 (407)
Q Consensus 230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (407)
.. .. .....++++++.|||| ++++|+|+||+ +++ + .+.+.+.........+++.+++.++..++++..
T Consensus 231 ~~--~~--~~~~~~~~i~~~s~sK-~~~~G~r~G~~--~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 298 (417)
T 3g7q_A 231 FS--EA--RPLWNPNIILCMSLSK-LGLPGSRCGII--IAN-D----KTITAIANMNGIISLAPGGMGPAMMCEMIKRND 298 (417)
T ss_dssp CS--CC--CCCCCTTEEEEEESGG-GTCTTSCCEEE--ECC-H----HHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTC
T ss_pred cc--cc--ccCCCCCEEEEEechh-ccCCCcceEEE--EeC-H----HHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcc
Confidence 00 00 0123468999999999 68899999998 455 4 455555555555566788999999999988764
Q ss_pred hHHhHHHHHHH-HHHHHHHHHHHHHHHHHhc-CCCCCcccccCCceeEEecC-----CCHHHHHHhHhhccEEEcCC---
Q 015435 310 MYKEWTLELKA-MADRIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFTFTG-----LNSEQVAFMTKEYHIYMTSD--- 379 (407)
Q Consensus 310 ~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~~~~g--- 379 (407)
|.+...+ .+++++++++.+.+.|++. +. ..+.+..+.+++|.|+. .+.+.+...|.++||.+.||
T Consensus 299 ----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f 373 (417)
T 3g7q_A 299 ----LLRLSETVIKPFYYQRVQQTIAIIRRYLSE-ERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYF 373 (417)
T ss_dssp ----HHHHHHHTHHHHHHHHHHHHHHHHHHHCCT-TTCEEECCCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGG
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCceeeCCCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhh
Confidence 2333443 6778888888888888763 21 11566778889999874 35566666667789999763
Q ss_pred ------------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435 380 ------------G--RISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 380 ------------g--Ris~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
+ ||+++. +++++++++++|+++++++
T Consensus 374 ~~~~~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 374 FPGLDKPWPHTHQCMRMNYVP-EPDKIEAGVKILAEEIERA 413 (417)
T ss_dssp CTTBSSCCGGGGGEEEEESCS-CHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccccCCCeEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence 2 999987 8899999999999998753
No 65
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=1e-38 Score=304.85 Aligned_cols=343 Identities=12% Similarity=0.124 Sum_probs=258.5
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT 110 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t 110 (407)
+++|||+.|.+ .. +.++.+.+++.+.+. .....|++. ..++|+++++++....+..+++++|++ |+|++
T Consensus 31 ~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~---~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--t~g~~ 99 (399)
T 1c7n_A 31 NEVVPLSVADM---EF-KNPPELIEGLKKYLD---ETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIIN--TAGVV 99 (399)
T ss_dssp TTCCCCCSSSC---SS-CCCHHHHHHHHHHHH---HCCCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEE--ESSHH
T ss_pred CCceeeeecCC---CC-CCCHHHHHHHHHHHh---cCCCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEE--cCCHH
Confidence 58999999874 22 445556666656554 224567553 899999999998432233345689999 99999
Q ss_pred cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCC-CCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435 111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPA-TRGLNFQGLLEDLRAAPSGAIVLLHACAHN 189 (407)
Q Consensus 111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N 189 (407)
+++.+++.. .+.+||+|+++.|+|.++...++..|.+++.+|..+++ .+.+|++++++.+.+ ++++++++ ++|+|
T Consensus 100 ~a~~~~~~~--l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-~~~~~v~~-~~~~n 175 (399)
T 1c7n_A 100 PAVFNAVRE--FTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD-KNNKALLF-CSPHN 175 (399)
T ss_dssp HHHHHHHHH--HCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC-TTEEEEEE-ESSBT
T ss_pred HHHHHHHHH--hcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc-CCCcEEEE-cCCCC
Confidence 999999543 36789999999999999999999999999999884222 245899999999863 24566665 89999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH-cCCcEEEEEecCccccccCCCcceeEEe
Q 015435 190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA-DGGECLVAQSYAKNMGLYGERVGALSIV 268 (407)
Q Consensus 190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~r~G~~~~v 268 (407)
|||.+++.+++++|+++|++||+++|+||+|.++.+++.. ..++..+.. ..++++++.|+||.++++|+|+||+ +
T Consensus 176 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~--~ 251 (399)
T 1c7n_A 176 PVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYE--HTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNI--I 251 (399)
T ss_dssp TTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCC--CCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEE--E
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC--cccHHHcCccccCcEEEEEeChhhccccchheEEE--E
Confidence 9999999999999999999999999999999998875421 111111111 1367899999999999999999999 5
Q ss_pred ecChhhHHHHHHHHhhhhhccc-CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcc
Q 015435 269 CKTEDVASRVESQLKLVIRPMY-SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDWS 346 (407)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~ 346 (407)
++++++.+.+.. ....+. .+++.+++.++..+++... +++++.+++++++++++.+.|++ ++. +.
T Consensus 252 ~~~~~~~~~l~~----~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~ 318 (399)
T 1c7n_A 252 IKNPDIRERFTK----SRDATSGMPFTTLGYKACEICYKECG------KWLDGCIKVIDKNQRIVKDFFEVNHPE---IK 318 (399)
T ss_dssp CCCHHHHHHHHH----HHHHTTCCCCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHCTT---SB
T ss_pred ECCHHHHHHHHH----HHhhcccCCCCHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHHhhCCC---Ce
Confidence 766655554433 333332 2578888888887776432 45778889999999999999988 532 67
Q ss_pred cccCCceeEEecCC-----CHHHHH-HhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435 347 HIIKQIGMFTFTGL-----NSEQVA-FMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 347 ~~~~~~~~~~~~~~-----~~~~~~-~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
+..+.++++.|+.+ +.+.+. .+++++||.+.|| + ||+++. +++++++++++|+++++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~ 393 (399)
T 1c7n_A 319 APLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALKDL 393 (399)
T ss_dssp CCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred EecCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc-CHHHHHHHHHHHHHHHHHH
Confidence 77788888887644 455444 4555789999875 2 999986 6788999999999998764
No 66
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=100.00 E-value=3.1e-39 Score=318.61 Aligned_cols=338 Identities=14% Similarity=0.114 Sum_probs=249.6
Q ss_pred eeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCC-C---CCCCCceEEeecCC
Q 015435 33 KLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADS-P---AIKDNRVTTVQCLS 108 (407)
Q Consensus 33 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~-~---~~~~~~i~~~~t~g 108 (407)
+|+|++|.+ + ..++.+++++.+.+. ..+|+++.|..++|+++++.+..... . ..++++|++ |+|
T Consensus 106 ~i~l~~g~~----~-~~~~~~~~al~~~~~-----~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~--t~G 173 (546)
T 2zy4_A 106 SLSYVRDQL----G-LDPAAFLHEMVDGIL-----GCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFA--VEG 173 (546)
T ss_dssp HHHHHHHTS----C-CCHHHHHHHHHHHHH-----TCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEE--EEH
T ss_pred hhecccCCC----C-CCChHHHHHHHHhhh-----cCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEE--ECC
Confidence 799999975 3 223455555555543 35798888999999998887633221 1 124589999 999
Q ss_pred cccHHHHHHHHHH---hhcCCCeEEecCCCCCChHHHHh--hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEE
Q 015435 109 GTGSLRVGAEFLA---RHYHQLTIYIPQPTWGNHPKVFT--LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 183 (407)
Q Consensus 109 ~t~a~~~~~~~~~---~~~~gd~Vi~~~p~y~~~~~~~~--~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i 183 (407)
+++++.+++..+. .+.+||+|++++|+|+.|..... ..|.+++.++++.+.++.+|++++++.+. ++++++++
T Consensus 174 ~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--~~~k~v~l 251 (546)
T 2zy4_A 174 GTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD--PAIKIFFC 251 (546)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS--TTEEEEEE
T ss_pred HHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC--CCCeEEEE
Confidence 9999999854421 35799999999999999998755 45788899988544456799999988764 55677777
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHH--HHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC
Q 015435 184 HACAHNPTGVDPTLEQWEQIRQLM--RSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER 261 (407)
Q Consensus 184 ~~~p~NPtG~~~~~~~l~~i~~~~--~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 261 (407)
++||||||.+++.+++++|+++| +++|++||+||+|.++.++. .++... ..+++++++||||.+|++|+|
T Consensus 252 -~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~-----~s~~~~--~~~~~i~~~S~SK~~g~~GlR 323 (546)
T 2zy4_A 252 -VNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDF-----QSLFAI--CPENTLLVYSFSKYFGATGWR 323 (546)
T ss_dssp -ESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTC-----CCHHHH--CGGGEEEEEESTTTTTCGGGC
T ss_pred -ECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccC-----cCHHHh--CCCCEEEEEeCccccCCCCcc
Confidence 79999999999999999999999 78999999999999988631 122221 235799999999999999999
Q ss_pred cceeEEeecChhhHHHHHHHH------------hh--------------------hhhcccCCCChhHHHHH-----HHH
Q 015435 262 VGALSIVCKTEDVASRVESQL------------KL--------------------VIRPMYSSPPIHGASIV-----ATI 304 (407)
Q Consensus 262 ~G~~~~v~~~~~~~~~~~~~~------------~~--------------------~~~~~~~~~~~~~~~~~-----~~~ 304 (407)
+||+ +++++++.+.+...+ .. .......+.+.+.|.++ ..+
T Consensus 324 iG~~--~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~al 401 (546)
T 2zy4_A 324 LGVV--AAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFAL 401 (546)
T ss_dssp EEEE--EEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHH
T ss_pred eEEE--EECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHH
Confidence 9999 576555666553321 10 01122235677777653 244
Q ss_pred hcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC---------------------HH
Q 015435 305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN---------------------SE 363 (407)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~ 363 (407)
+++.+ .+.+++++.++++++++.+.|. .+ +....+.++||+|+++. .+
T Consensus 402 l~~~~------~~~~~~r~~~~~r~~~l~~~L~-~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~ 470 (546)
T 2zy4_A 402 MDEAD------EYKHTLKQLIRRRETTLYRELG-MP----PLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGD 470 (546)
T ss_dssp HCTTC------HHHHHHHHHHHHHHHHHHGGGT-SS----CCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHH
T ss_pred HhccH------HHHHHHHHHHHHHHHHHHHhcC-CC----cccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHH
Confidence 55432 4567788899999999998885 44 55567889999887542 24
Q ss_pred HHHHhHhhccEEEcCCC---------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435 364 QVAFMTKEYHIYMTSDG---------RISMAGLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 364 ~~~~~l~~~gi~~~~gg---------Ris~~~~~~e~i~~~~~~l~~~l~~ 405 (407)
++.++++++||.+.||. ||+++..+++++++++++|++++++
T Consensus 471 ~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 521 (546)
T 2zy4_A 471 MLFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMADE 521 (546)
T ss_dssp HHHHHHHHHSCCCEESSCTTCSSCEEEEESSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEeCccccCCCCCeEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 46778888999999962 9999865778899999999998864
No 67
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=3.9e-38 Score=297.04 Aligned_cols=323 Identities=13% Similarity=0.126 Sum_probs=247.6
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
..+++|||+.|.+ ..+.++.+.+++.+.+ .....| |..+..++|+++++++ + +++++|++ |+|
T Consensus 30 ~~~~~i~l~~~~~----~~~~~~~v~~a~~~~~----~~~~~y-~~~~~~~lr~~la~~~-~-----~~~~~v~~--~~g 92 (363)
T 3ffh_A 30 GLTKITKLSSNEN----PLGTSKKVAAIQANSS----VETEIY-PDGWASSLRKEVADFY-Q-----LEEEELIF--TAG 92 (363)
T ss_dssp TCSCCEECSSCSC----TTCCCHHHHHHHHTCB----SCCCBC-----CHHHHHHHHHHH-T-----CCGGGEEE--ESS
T ss_pred CCCceEEccCCCC----CCCCCHHHHHHHHHHH----HHhhcC-CCcchHHHHHHHHHHh-C-----CChhhEEE--eCC
Confidence 3468999999974 2244444444443333 234456 5678999999999999 4 23589999 999
Q ss_pred cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435 109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAH 188 (407)
Q Consensus 109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~ 188 (407)
+++++.++++. .+.+||+|+++.|+|..+...++..|.+++.+|.+ .++.+|++++++.+. ++++++++ ++|+
T Consensus 93 ~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~--~~~~~v~~-~~p~ 165 (363)
T 3ffh_A 93 VDELIELLTRV--LLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLL--QDGEHDLEGMLNAID--EKTTIVWI-CNPN 165 (363)
T ss_dssp HHHHHHHHHHH--HCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECC--TTSCCCHHHHHHHCC--TTEEEEEE-ESSC
T ss_pred HHHHHHHHHHH--HccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--CCCCcCHHHHHHhcc--cCCCEEEE-eCCC
Confidence 99999999533 37799999999999999999999999999999983 357899999999987 56677777 8999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435 189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV 268 (407)
Q Consensus 189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v 268 (407)
||||.+++.+++.+|++.|++ |+++|+|++|.++.+ +.. .+........++++++.|+||.+|++|+|+||+ +
T Consensus 166 nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~---~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~--~ 238 (363)
T 3ffh_A 166 NPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQP---EKHEKLVRTYKNLIITRTFSKIYGLASARVGYG--I 238 (363)
T ss_dssp TTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCC---CCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEE--E
T ss_pred CCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccc---cCHHHHhhcCCCEEEEeechhhhcCchhceeee--e
Confidence 999999999999999888887 999999999998886 321 111112344678999999999999999999999 5
Q ss_pred ecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCccc
Q 015435 269 CKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDWSH 347 (407)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~ 347 (407)
++ ++ +.+.+..... .++++.+++.++..++++. +++++.+++++++++++.+.|++ .+ +.+
T Consensus 239 ~~-~~----~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~g----~~~ 300 (363)
T 3ffh_A 239 AD-KE----IIRQLNIVRP--PFNTTSIGQKLAIEAIKDQ-------AFIGECRTSNANGIKQYEAFAKRFEK----VKL 300 (363)
T ss_dssp EC-HH----HHHHHHHTCC--SCCCBHHHHHHHHHHHHCH-------HHHHHHHHHHHHHHHHHHHHHHHCTT----CEE
T ss_pred cC-HH----HHHHHHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHhhCCC----ceE
Confidence 64 44 4444444433 4478889999999888754 45778889999999999999998 55 666
Q ss_pred ccCCceeEEecCC--CHHHHHHhHhhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHHH
Q 015435 348 IIKQIGMFTFTGL--NSEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 348 ~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~l 403 (407)
.++.+ .|.|+.+ +.+.+.+.|.++||.+.+|. ||+++ +++++++++++|++++
T Consensus 301 ~~~~~-~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 301 YPANG-NFVLIDLGIEAGTIFSYLEKNGYITRSGAALGFPTAVRITIG--KEEDNSAVIALLEKLL 363 (363)
T ss_dssp CCCCS-SEEEEECSSCHHHHHHHHHHTTEECEETTTTTCTTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred CCCCC-eEEEEECCCCHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC--CHHHHHHHHHHHHHhC
Confidence 65554 4567755 55566655666899998862 88887 7789999999998763
No 68
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=100.00 E-value=1.1e-38 Score=304.87 Aligned_cols=359 Identities=16% Similarity=0.185 Sum_probs=253.3
Q ss_pred ccccccCCCCCc-hhhhh---Hhhh-hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhc--cccccccCCCCCCcH
Q 015435 6 VFGKIVRAPEDP-ILGVT---VAYN-KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN--DQSRVKEYLPIVGLV 78 (407)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~---~~~~-~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~~~g~~ 78 (407)
+.+++...++.. +.... ..+. ..+++++|+|+.|.+ .. +.++.+.+++.+.+.. ......+|++..|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~ 78 (400)
T 3asa_A 3 RNPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDT---TQ-PLNASVAEAFASSIARLSSPTTCRGYGPDFGLP 78 (400)
T ss_dssp CCHHHHTCCCCCHHHHHHHHHHHHHHHCTTSCCEECSSCCC---CC-CCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCH
T ss_pred cchhhhccCCcccHHHHHHHHHHhhhhcCCCceEeccCCCC---CC-CCCHHHHHHHHHHHhcccccccccCCCCCCCCH
Confidence 345555555433 22222 2222 234678999999974 22 4455566666555531 011245688888999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCce-eeEEEeec
Q 015435 79 DFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLS-VKTYRYYD 157 (407)
Q Consensus 79 ~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~-~~~v~~~~ 157 (407)
++|+++++++. .+. +++++|++ |+|+++++.++. ..+.+||+|+++.|+|.++...++..|.+ ++.+|+.+
T Consensus 79 ~lr~~la~~l~--~g~-~~~~~v~~--~~G~~~al~~~~---~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~ 150 (400)
T 3asa_A 79 ALRQKLSEDFY--RGF-VDAKEIFI--SDGAKVDLFRLL---SFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQ 150 (400)
T ss_dssp HHHHHHHHTTS--TTS-SCGGGEEE--ESCHHHHHHHHH---HHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCG
T ss_pred HHHHHHHHHHH--cCC-CCHHHEEE--ccChHHHHHHHH---HHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccch
Confidence 99999999973 232 45689999 999999999873 44578999999999999999999999998 99998843
Q ss_pred CCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHH
Q 015435 158 PATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM 237 (407)
Q Consensus 158 ~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~ 237 (407)
+.++..+++++ ++++++++ ++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++.. ..++..
T Consensus 151 ~~~~~~~l~~~-------~~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~ 220 (400)
T 3asa_A 151 ENAFFPEFPED-------THIDILCL-CSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSL--PKSIFE 220 (400)
T ss_dssp GGTTCCCCCTT-------CCCSEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTS--CSSGGG
T ss_pred hcCcccChhhc-------cCccEEEE-eCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCC--CCchhh
Confidence 22233343321 35677777 689999999999999999999999999999999999988775321 111211
Q ss_pred HHHcCCcEEEEEecCccccccCCCcceeEEeecChhh-------HHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhh
Q 015435 238 FVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDV-------ASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTM 310 (407)
Q Consensus 238 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
+....+++++++|+||.+|++|+|+||+ +++ +++ .+.+... .......+++.++|.++..++++.
T Consensus 221 ~~~~~~~~i~~~s~sK~~g~~GlriG~~--~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~-- 292 (400)
T 3asa_A 221 IPDARFCAIEINSFSKPLGFAGIRLGWT--VIP-QELTYADGHFVIQDWER---FLSTTFNGASIPAQEAGVAGLSIL-- 292 (400)
T ss_dssp STTGGGTEEEEEECCGGGTTTTCCCEEE--ECC-TTCBCTTSCBHHHHHHH---HHHHHCCCCCHHHHHHHHHHHHHT--
T ss_pred CCCCCCceEEEecchhhcCCcchheeEE--eeC-hhhccchhhhHHHHHHH---HhccCccCCChHHHHHHHHHhCcH--
Confidence 1111356899999999999999999999 565 443 3333221 111222367888898888777643
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecC-CC----H-HHHHHhHhhccEEEcCC-----
Q 015435 311 YKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTG-LN----S-EQVAFMTKEYHIYMTSD----- 379 (407)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~----~-~~~~~~l~~~gi~~~~g----- 379 (407)
++++.+++++++++++.+.|++.+ +.+..+.+++|.|+. +. . +....+++++||.+.||
T Consensus 293 ------~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~ 362 (400)
T 3asa_A 293 ------PQLEAIHYYRENSDLLRKALLATG----FEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGR 362 (400)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHTT----CEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCG
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHCC----CeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCC
Confidence 245677888899999999999876 676667778888876 42 2 45566777789999875
Q ss_pred ---C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435 380 ---G--RISMAGLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 380 ---g--Ris~~~~~~e~i~~~~~~l~~~l~~ 405 (407)
+ ||++.. +++++++++++|++++++
T Consensus 363 ~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~ 392 (400)
T 3asa_A 363 SGSGFVRFSSLG-KREDILAACERLQMAPAL 392 (400)
T ss_dssp GGTTCEEEECCS-CHHHHHHHHHHHHC----
T ss_pred CCCCEEEEEeeC-CHHHHHHHHHHHHHHHHh
Confidence 1 888654 889999999999998865
No 69
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=3.7e-38 Score=300.15 Aligned_cols=341 Identities=15% Similarity=0.083 Sum_probs=253.3
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHH-HHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVD-FNKLSAKLILGADSPAIKDNRVTTVQCLSG 109 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~-l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~ 109 (407)
+++|||+.|.+ +. +.++.+.+++.+.+. .....|++. ..+ +|+++++++....+..+++++|++ |+|+
T Consensus 28 ~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~---~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~--t~g~ 96 (390)
T 1d2f_A 28 ADLLPFTISDM---DF-ATAPCIIEALNQRLM---HGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVY--GPSV 96 (390)
T ss_dssp --CEECCSSSC---SS-CCCHHHHHHHHHHHT---TCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEE--ESCH
T ss_pred CCeeEeeecCC---CC-CCCHHHHHHHHHHHh---CCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEE--cCCH
Confidence 57999999874 22 445556666656554 224567654 778 999999998543444455689999 9999
Q ss_pred ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCC-CCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435 110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPA-TRGLNFQGLLEDLRAAPSGAIVLLHACAH 188 (407)
Q Consensus 110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~i~~~~~~~~v~i~~~p~ 188 (407)
++++.+++ ...+.+||+|+++.|+|.++...++..|.+++.+|...+. .+.+|++++++.+.+ .+++++++ ++|+
T Consensus 97 ~~al~~~~--~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-~~~~~v~l-~~p~ 172 (390)
T 1d2f_A 97 IYMVSELI--RQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK-PECKIMLL-CSPQ 172 (390)
T ss_dssp HHHHHHHH--HHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS-TTEEEEEE-ESSC
T ss_pred HHHHHHHH--HHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc-CCCeEEEE-eCCC
Confidence 99999995 3346789999999999999999999999999999985322 245899999999872 14566665 7999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435 189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV 268 (407)
Q Consensus 189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v 268 (407)
||||.+++.+++++|+++|++||+++|+||+|.++.+++.. ..++..+.. .-... +.|+||.++++|+|+||+ +
T Consensus 173 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~-~~~d~-~~s~sK~~~~~G~r~G~~--~ 246 (390)
T 1d2f_A 173 NPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQP--HIPWSNVAR-GDWAL-LTSGSKSFNIPALTGAYG--I 246 (390)
T ss_dssp TTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSC--CCCGGGTCC-SSEEE-EECSHHHHTCGGGCCEEE--E
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC--CcCHHHcch-hhHhh-ccCccHhhcccChhheEE--E
Confidence 99999999999999999999999999999999998875421 111111111 10023 999999999999999999 6
Q ss_pred ecChhhHHHHHHHHhhhhh-ccc-CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCc
Q 015435 269 CKTEDVASRVESQLKLVIR-PMY-SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDW 345 (407)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~ 345 (407)
++++++.+.+.. ... ... .+++.+++.++..+++... +++++.+++++++++++.+.|++ ++. +
T Consensus 247 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~~---~ 313 (390)
T 1d2f_A 247 IENSSSRDAYLS----ALKGRDGLSSPSVLALTAHIAAYQQGA------PWLDALRIYLKDNLTYIADKMNAAFPE---L 313 (390)
T ss_dssp ECSHHHHHHHHH----HHHTTSCCCSCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHCSS---C
T ss_pred ECCHHHHHHHHH----HHhhhcccCCCCHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHhhCCC---C
Confidence 766665544433 332 223 3678888888877776422 45778889999999999999988 532 6
Q ss_pred ccccCCceeEEecCC-----CHHHHH-HhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435 346 SHIIKQIGMFTFTGL-----NSEQVA-FMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 346 ~~~~~~~~~~~~~~~-----~~~~~~-~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
.+..+.++++.|+.+ +.+.+. .+++++||.+.+| + ||+++. +++++++++++|+++++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 314 NWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp CCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhh
Confidence 667788888887643 455444 4554789999875 2 999997 7789999999999998764
No 70
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=4.4e-38 Score=304.78 Aligned_cols=365 Identities=14% Similarity=0.091 Sum_probs=261.1
Q ss_pred CCchhhhhHhhh-hcCCCCee-eeeeeeeecCCCccccchhHHHHHHHHhcc-------c---cccccCCCCCCcHHHHH
Q 015435 15 EDPILGVTVAYN-KDTSPVKL-NLGVGAYRTEEGKPLVLNVVRKAEQLLVND-------Q---SRVKEYLPIVGLVDFNK 82 (407)
Q Consensus 15 ~~~~~~~~~~~~-~~~~~~~i-~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~y~~~~g~~~l~~ 82 (407)
+.++...+..+. ....+++| +|+.|.| ...|.+.+.+.+.+.....+ . ....+|.+..|++++|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~ 90 (444)
T 3if2_A 14 PTGISQLMDDLGDALKSDQPVNMLGGGNP---AKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFID 90 (444)
T ss_dssp CCHHHHHHHHHHHHHHSSSCCEECSCCCC---CCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHH
T ss_pred chhHHHHHHHHHhhhcCchhhhccCCCCC---CcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHH
Confidence 345666665443 22347899 9999986 33232334444444443312 1 12357988999999999
Q ss_pred HHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCC--------------eEEec-CCCCCChHHH-----
Q 015435 83 LSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQL--------------TIYIP-QPTWGNHPKV----- 142 (407)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd--------------~Vi~~-~p~y~~~~~~----- 142 (407)
++++++...++..+++++|++ |+|+++++.+++ ...+.+|| +|+++ .|+|..+...
T Consensus 91 ~ia~~l~~~~g~~~~~~~i~~--t~G~t~al~~~~--~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~ 166 (444)
T 3if2_A 91 ALVGFFNRHYDWNLTSENIAL--TNGSQNAFFYLF--NLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQ 166 (444)
T ss_dssp HHHHHHHHHHCCCCCGGGEEE--ESSHHHHHHHHH--HHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSC
T ss_pred HHHHHHHhhcCCCCCHHHEEE--ecCcHHHHHHHH--HHHhCCCccccccccccccccceEEEeCCCCccchhhcccccc
Confidence 999999555555567799999 999999999995 33466887 78876 8999988773
Q ss_pred -HhhcCceeeEEEeecCC---CCCcChhhHHHHHHc-CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeec
Q 015435 143 -FTLAGLSVKTYRYYDPA---TRGLNFQGLLEDLRA-APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFD 217 (407)
Q Consensus 143 -~~~~G~~~~~v~~~~~~---~~~~d~~~l~~~i~~-~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D 217 (407)
+...|..++.++.+.++ ++++|++++++++.+ .++++++++ ++||||||.+++.+++++|+++|++||++||+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i-~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~D 245 (444)
T 3if2_A 167 HFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICC-SRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIID 245 (444)
T ss_dssp CEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEe-CCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45678888888873111 247899999987432 255667666 899999999999999999999999999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhH
Q 015435 218 SAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHG 297 (407)
Q Consensus 218 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (407)
|+|..+... .... .. .....+.++++.||||. +++|+|+||+ +++ + .+...+.........+++.+.
T Consensus 246 e~~~~~~~~-~~~~--~~--~~~~~~~~i~~~S~sK~-~~~G~r~G~~--~~~-~----~l~~~~~~~~~~~~~~~~~~~ 312 (444)
T 3if2_A 246 NAYGMPFPN-IIYS--DA--HLNWDNNTILCFSLSKI-GLPGMRTGII--VAD-A----KVIEAVSAMNAVVNLAPTRFG 312 (444)
T ss_dssp CTTCTTTTC-CBCS--CC--CCCCCTTEEEEEESTTT-TCGGGCCEEE--ECC-H----HHHHHHHHHHHHHHSSCCCHH
T ss_pred CCCCCcccc-cccc--cc--cccCCCCEEEEechhhc-cCCCCceEEE--EEC-H----HHHHHHHHHHHhccCCCChHH
Confidence 999753321 0000 00 01224678999999997 7899999999 454 4 455555555555556788899
Q ss_pred HHHHHHHhcChhhHHhHHHHHHH-HHHHHHHHHHHHHHHHHhc-CCCCCcccccCCceeEEecC-----CCHHHHHHhHh
Q 015435 298 ASIVATILKDSTMYKEWTLELKA-MADRIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFTFTG-----LNSEQVAFMTK 370 (407)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~ 370 (407)
+.++..+++...+ .....+ .++.++++++.+.+.|.+. +. ..+.+..+.++++.|+. .+.+.+...|.
T Consensus 313 ~~a~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~ 387 (444)
T 3if2_A 313 AAIATPLVANDRI----KQLSDNEIKPFYQKQATLAVKLLKQALGD-YPLMIHKPEGAIFLWLWFKDLPISTLDLYERLK 387 (444)
T ss_dssp HHHHHHHHHTSHH----HHHHHHTHHHHHHHHHHHHHHHHHHHSSS-SSEEEECCCBSSEEEEEETTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCch----hHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCceEecCCccEEEEEEcCCCCCCHHHHHHHHH
Confidence 9999998887642 233333 6677888888888888763 21 11566677888998873 45666666667
Q ss_pred hccEEEcCC----------------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435 371 EYHIYMTSD----------------G--RISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 371 ~~gi~~~~g----------------g--Ris~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
++||.+.|| + ||+++. +++++++++++|+++++++
T Consensus 388 ~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~~ 440 (444)
T 3if2_A 388 AKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA-DEQTLIDGIKVIGEVVREL 440 (444)
T ss_dssp HTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS-CHHHHHHHHHHHHHHHHHH
T ss_pred HCCeEEecchhhcCCCCCcccccCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHH
Confidence 799998763 2 899987 8999999999999998753
No 71
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=9.7e-37 Score=287.17 Aligned_cols=323 Identities=13% Similarity=0.144 Sum_probs=247.2
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
+++++|||+.|.+ .. +.++.+.+++.+.+. . ...| +..+..++|+++++++ + +++++|++ |+|
T Consensus 24 ~~~~~idl~~~~~---~~-~~~~~v~~a~~~~~~--~--~~~y-~~~~~~~l~~~la~~~-~-----~~~~~i~~--~~g 86 (361)
T 3ftb_A 24 KGRELLDYSSNIN---PL-GIPKSFLNNIDEGIK--N--LGVY-PDVNYRRLNKSIENYL-K-----LKDIGIVL--GNG 86 (361)
T ss_dssp ----CEETTCCCC---TT-CSCHHHHTTHHHHHH--G--GGSC-CCTTCHHHHHHHHHHH-T-----CCSCEEEE--ESS
T ss_pred CCCCEEEecCCCC---CC-CCCHHHHHHHHHHHH--H--hcCC-CCccHHHHHHHHHHHh-C-----CCcceEEE--cCC
Confidence 5678999999974 22 445566666666664 2 4557 5678999999999999 3 23589999 999
Q ss_pred cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435 109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAH 188 (407)
Q Consensus 109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~ 188 (407)
+++++.+++ ..+ |+|+++.|+|..+...++..|.+++.++++ ...+++++++++.+. + ++++++ ++|+
T Consensus 87 ~t~al~~~~---~~~---d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~l~--~-~~~v~i-~~p~ 154 (361)
T 3ftb_A 87 ASEIIELSI---SLF---EKILIIVPSYAEYEINAKKHGVSVVFSYLD--ENMCIDYEDIISKID--D-VDSVII-GNPN 154 (361)
T ss_dssp HHHHHHHHH---TTC---SEEEEEESCCTHHHHHHHHTTCEEEEEECC--TTSCCCHHHHHHHTT--T-CSEEEE-ETTB
T ss_pred HHHHHHHHH---HHc---CcEEEecCChHHHHHHHHHcCCeEEEeecC--cccCCCHHHHHHhcc--C-CCEEEE-eCCC
Confidence 999999984 333 999999999999999999999999999983 335688899999987 4 777776 8999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435 189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV 268 (407)
Q Consensus 189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v 268 (407)
||||.+++.+++++|+++|++||+++|+||+|.++.++ .. .+........+++++++|+||.++++|+|+||+ +
T Consensus 155 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~---~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~--~ 228 (361)
T 3ftb_A 155 NPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PS---SSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYG--I 228 (361)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TT---SSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEE--E
T ss_pred CCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cc---cchhHhcccCCCEEEEeeChhhcCCCCcceeEE--E
Confidence 99999999999999999999999999999999988875 11 111112234578899999999999999999998 5
Q ss_pred ecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-c
Q 015435 269 CKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS-H 347 (407)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~ 347 (407)
+.++++.+. +..... .++++.+++.++..++++. +++++.+++++++++++.+.|++.+. +. +
T Consensus 229 ~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~ 292 (361)
T 3ftb_A 229 TNNKEIAAK----IKAKQN--PWNINCFAEMAAINCLKDT-------NYIEESLLWIKKERKRFIEELNKIGF---IKRV 292 (361)
T ss_dssp ESCHHHHHH----HHTTSC--TTCSCHHHHHHHHHTSSCH-------HHHHHHHHHHHHHHHHHHHHHHHSSS---EEEE
T ss_pred eCCHHHHHH----HHhhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHhCCC---Ccee
Confidence 466654444 443333 3478889999999988863 55778889999999999999998743 66 5
Q ss_pred ccCCceeEEecC---CCHHHHHHhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435 348 IIKQIGMFTFTG---LNSEQVAFMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 348 ~~~~~~~~~~~~---~~~~~~~~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 405 (407)
..+.+++ .|+. .+.+.+...|.++||.+.+| + ||+++ ++++++++.+.|+++.+.
T Consensus 293 ~~~~~~~-~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 293 FSPHANF-VLCRLENISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK--DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp ECCSSSE-EEEEESSSCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred cCCCCeE-EEEEcCCCCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHhc
Confidence 6666654 4443 35555555555579999875 2 88877 567788888888887764
No 72
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=100.00 E-value=1.9e-37 Score=291.59 Aligned_cols=315 Identities=19% Similarity=0.241 Sum_probs=239.8
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT 110 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t 110 (407)
.++|||+.|++ +.+ .|+.+ ++ ....+|++ .+..++|+++++++ + +++++|++ |+|++
T Consensus 29 ~~~i~l~~~~~--~~~--~~~~v------a~----~~~~~Y~~-~~~~~lr~~la~~~-~-----~~~~~v~~--~~G~~ 85 (356)
T 1fg7_A 29 NGDVWLNANEY--PTA--VEFQL------TQ----QTLNRYPE-CQPKAVIENYAQYA-G-----VKPEQVLV--SRGAD 85 (356)
T ss_dssp TCSEECSSCCC--SSC--CCCCC------CC----CCTTSCCC-SSCHHHHHHHHHHH-T-----SCGGGEEE--ESHHH
T ss_pred CceEEeeCCCC--CCC--CCHhH------hh----hhhccCCC-ccHHHHHHHHHHHh-C-----CChHHEEE--cCCHH
Confidence 47899999984 233 33333 12 13566855 46899999999999 4 23479999 99999
Q ss_pred cHHHHHHHHHHhhcCC-CeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435 111 GSLRVGAEFLARHYHQ-LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN 189 (407)
Q Consensus 111 ~a~~~~~~~~~~~~~g-d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N 189 (407)
+++.++++ ..+.+| |+|+++.|+|..+...++..|.+++.+|.. +++.+|++++++.+. +++++++ ++|||
T Consensus 86 ~ai~~~~~--~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~~~v~l-~~p~n 157 (356)
T 1fg7_A 86 EGIELLIR--AFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD---GVKVVYV-CSPNN 157 (356)
T ss_dssp HHHHHHHH--HHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT---TEEEEEE-ESSCT
T ss_pred HHHHHHHH--HHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCC--CCCCCCHHHHHHHhc---CCCEEEE-eCCCC
Confidence 99999853 336789 999999999999999999999999999883 456789999988775 4566666 89999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435 190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC 269 (407)
Q Consensus 190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~ 269 (407)
|||.+++.+++++|+++|+ +|+++|+||+|.++... ....+ +....+++++++|+||.+|++|+|+||+ ++
T Consensus 158 ptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~---~~~~~---~~~~~~~~i~~~s~sK~~g~~G~r~G~~--~~ 228 (356)
T 1fg7_A 158 PTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ---ASLAG---WLAEYPHLAILRTLSKAFALAGLRCGFT--LA 228 (356)
T ss_dssp TTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG---GCSGG---GTTTCTTEEEEEESSSTTCCGGGCCEEE--EE
T ss_pred CCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC---CcHHH---HHhhCCCEEEEecchHhhcCchhhhEEE--Ee
Confidence 9999999999999999999 99999999999988721 11111 2233467899999999999999999999 56
Q ss_pred cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435 270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII 349 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 349 (407)
+ ++ +.+.+...... ++++.++|.++..++++.. + +++++.+++++++++++.+.|++.+. +....
T Consensus 229 ~-~~----~~~~l~~~~~~--~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~ 293 (356)
T 1fg7_A 229 N-EE----VINLLMKVIAP--YPLSTPVADIAAQALSPQG----I-VAMRERVAQIIAEREYLIAALKEIPC---VEQVF 293 (356)
T ss_dssp C-HH----HHHHHHHHSCS--SCSCHHHHHHHHHHTSHHH----H-HHHHHHHHHHHHHHHHHHHHHHHSTT---EEEEC
T ss_pred C-HH----HHHHHHHhcCC--CCCCHHHHHHHHHHhcCcc----H-HHHHHHHHHHHHHHHHHHHHHHhCCC---ceEEC
Confidence 4 44 44444444332 3788899999998887542 1 23678888999999999999998762 32334
Q ss_pred CCceeEEecCC-CHHHHHHhHhhccEEEcC-C------C--eEEecCCCCCChhHHHHHHHHH
Q 015435 350 KQIGMFTFTGL-NSEQVAFMTKEYHIYMTS-D------G--RISMAGLSSKTVPHLTDAIHAA 402 (407)
Q Consensus 350 ~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~-g------g--Ris~~~~~~e~i~~~~~~l~~~ 402 (407)
+.++.|.|+.+ +.+.+.+.|.++||.+.+ | + ||+++ +++++++++++|+++
T Consensus 294 ~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~--~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 294 DSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG--TREESQRVIDALRAE 354 (356)
T ss_dssp CCSSSEEEEEETTHHHHHHHHHHTTEECEECTTSTTCTTEEEEECC--CHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC--CHHHHHHHHHHHHhh
Confidence 45667778766 455555555779999998 5 2 88887 568899998888753
No 73
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=2.4e-36 Score=281.75 Aligned_cols=314 Identities=17% Similarity=0.201 Sum_probs=237.4
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
..++.|+|+.+.. ..+.++.+.+++.+.+. ....| |..+..++|+++++++ + .++++|++ |+|
T Consensus 14 ~~~~~i~l~~n~~----~~~~~~~v~~a~~~~~~----~~~~y-~~~~~~~lr~~la~~~-~-----~~~~~i~~--t~G 76 (337)
T 3p1t_A 14 AAAQAVCLAFNEN----PEAVEPRVQAAIAAAAA----RINRY-PFDAEPRVMRKLAEHF-S-----CPEDNLML--VRG 76 (337)
T ss_dssp CCCCCEECSSCCC----CSCCCHHHHHHHHHHGG----GTTSC-CTTHHHHHHHHHHHHH-T-----SCGGGEEE--ESH
T ss_pred CCCCceEeeCCCC----CCCCCHHHHHHHHHhhh----hhccC-CCCchHHHHHHHHHHh-C-----cCHHHEEE--eCC
Confidence 3468999998862 22334444444444332 35667 5679999999999998 4 23479999 999
Q ss_pred cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435 109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAH 188 (407)
Q Consensus 109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~ 188 (407)
+++++.+++ ..+ +||+|+++.|+|..+...++..|.+++.++. ++++++|++++++. .+++++++ ++|+
T Consensus 77 ~~~~l~~~~---~~~-~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~----~~~~~v~i-~~p~ 145 (337)
T 3p1t_A 77 IDECFDRIS---AEF-SSMRFVTAWPGFDGYRARIAVSGLRHFEIGL--TDDLLLDPNDLAQV----SRDDCVVL-ANPS 145 (337)
T ss_dssp HHHHHHHHH---HHS-TTSEEEEESSSCSHHHHHHTTSCCEEEEECB--CTTSSBCHHHHTTC----CTTEEEEE-ESSC
T ss_pred HHHHHHHHH---Hhc-CCCeEEEeCCCcHHHHHHHHHcCCEEEEecC--CCCCCCCHHHHHhh----cCCCEEEE-eCCC
Confidence 999999984 334 8999999999999999999999999999998 34578999988874 34566655 9999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435 189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV 268 (407)
Q Consensus 189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v 268 (407)
||||.+++.+++.+| |+++++ +|+||+|+++...+.. .....+++++++|+||.+|++|+|+||+ +
T Consensus 146 nptG~~~~~~~l~~l---~~~~~~-~ivDea~~~~~~~~~~--------~~~~~~~~i~~~S~sK~~g~~G~r~G~~--~ 211 (337)
T 3p1t_A 146 NPTGQALSAGELDQL---RQRAGK-LLIDETYVDYSSFRAR--------GLAYGENELVFRSFSKSYGLAGLRLGAL--F 211 (337)
T ss_dssp TTTCCCCCHHHHHHH---HHHCSE-EEEECTTGGGSSCSSS--------CCCCBTTEEEEEESSSTTCCTTTCCEEE--E
T ss_pred CCCCCCCCHHHHHHH---HHhCCc-EEEECCChhhcccccc--------ccccCCCEEEEeeCchhccCcchheEEE--E
Confidence 999999998776666 778886 5669999988764321 0123467899999999999999999999 4
Q ss_pred ecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 015435 269 CKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI 348 (407)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 348 (407)
++ + .+...+.... ...+++.+++.++..++++.. ..++.++++.++++++.+.|++.+ +.+.
T Consensus 212 ~~-~----~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~-------~~~~~~~~~~~~~~~l~~~L~~~g----~~~~ 273 (337)
T 3p1t_A 212 GP-S----ELIAAMKRKQ--WFCNVGTLDLHALEAALDNDR-------AREAHIAKTLAQRRRVADALRGLG----YRVA 273 (337)
T ss_dssp CC-H----HHHHHHHTTS--CTTCSCHHHHHHHHHHHTCHH-------HHHHHHHHHHHHHHHHHHHHHHTT----CCBC
T ss_pred eC-H----HHHHHHHhhc--CCCCCCHHHHHHHHHHhCCHH-------HHHHHHHHHHHHHHHHHHHHHHCc----CEEC
Confidence 55 4 3444454443 234778888998888888652 244555667778899999999886 6777
Q ss_pred cCCceeEEecCCCHHHHHHhHhhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHHHH
Q 015435 349 IKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAAVT 404 (407)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~l~ 404 (407)
.+.++++.|...+.+.+.++|.++||.+.+|. ||+++ +++++++++++|+++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 274 SSEANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIG--REEDNDRLLAALAEYSD 335 (337)
T ss_dssp CCSSSEEEEECTTTHHHHHHHHHTTEECEEGGGGTCCSEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEEcCCHHHHHHHHHHCCeEEEECccCCCCCeEEEecC--CHHHHHHHHHHHHHHhh
Confidence 77787776665566667777788999998863 88887 67889999999988754
No 74
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=100.00 E-value=9.2e-36 Score=280.51 Aligned_cols=319 Identities=17% Similarity=0.213 Sum_probs=240.2
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
.++++|||+.|.+ . .+.++.+.+++.+.+.+.......|+ ..+..++|+++++++ + +++++|++ |+|
T Consensus 24 ~~~~~i~l~~~~~---~-~~~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~lr~~la~~~-g-----~~~~~i~~--t~g 90 (360)
T 3hdo_A 24 DIASWIKLNTNEN---P-YPPSPEVVKAILEELGPDGAALRIYP-SASSQKLREVAGELY-G-----FDPSWIIM--ANG 90 (360)
T ss_dssp CCTTSEECSSCCC---S-SCCCHHHHHHHHHHHTTTCGGGGSCC-CSSCHHHHHHHHHHH-T-----CCGGGEEE--ESS
T ss_pred cccceeeccCCCC---C-CCCCHHHHHHHHHHHhcccchhhcCC-CCchHHHHHHHHHHh-C-----cCcceEEE--cCC
Confidence 4578999999985 2 25566777777666651111245674 457799999999999 4 34589999 999
Q ss_pred cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCC
Q 015435 109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAH 188 (407)
Q Consensus 109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~ 188 (407)
+++++.+++. ..+.+||+|+++.|+|.++...++..|.+++.++.+ +++.+ +++++.+ +++++++ ++|+
T Consensus 91 ~~~al~~~~~--~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~--~~l~~~~----~~~~v~i-~~p~ 159 (360)
T 3hdo_A 91 SDEVLNNLIR--AFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLT--GDFRI--AGFPERY----EGKVFFL-TTPN 159 (360)
T ss_dssp HHHHHHHHHH--HHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBC--TTSSB--TTCCSSB----CSSEEEE-ESSC
T ss_pred HHHHHHHHHH--HHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCC--CCCCH--HHHHhhc----CCCEEEE-eCCC
Confidence 9999999953 447899999999999999999999999999999983 22333 4444322 3456555 8999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe
Q 015435 189 NPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV 268 (407)
Q Consensus 189 NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v 268 (407)
||||.+++.+++.+| |+++|+++|+||+|.++... ..... ....+++++++|+||.++++|+|+||+ +
T Consensus 160 nptG~~~~~~~l~~l---~~~~~~~li~De~~~~~~~~----~~~~~---~~~~~~~i~~~s~sK~~g~~G~r~G~~--~ 227 (360)
T 3hdo_A 160 APLGPSFPLEYIDEL---ARRCAGMLVLDETYAEFAES----NALEL---VRRHENVVVTRTLSKSYSLAGMRIGLA--I 227 (360)
T ss_dssp TTTCCCCCHHHHHHH---HHHBSSEEEEECTTGGGSSC----CCTHH---HHHCSSEEEEEESTTTTSCTTSCCEEE--E
T ss_pred CCCCCCcCHHHHHHH---HHHCCCEEEEECChHhhCCc----chhHH---hccCCCEEEEecchHhhcCCccceeeE--e
Confidence 999999997665555 88999999999999987532 11222 234578899999999999999999999 4
Q ss_pred ecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 015435 269 CKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI 348 (407)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 348 (407)
+ +++ +.+.+..... .++++.+++.++..++++. +++++.+++++++++++.+.|++.+ +.+.
T Consensus 228 ~-~~~----~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~ 289 (360)
T 3hdo_A 228 A-RPE----VIAALDKIRD--HYNLDRLAQAACVAALRDQ-------AYLSECCRRIRETREWFTTELRSIG----YDVI 289 (360)
T ss_dssp C-CHH----HHHHHHHHSC--SCCSCHHHHHHHHHHHHCH-------HHHHHHHHHHHHHHHHHHHHHHHTT----CEEC
T ss_pred e-CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----CEEc
Confidence 5 454 4444444433 3478889999999888864 4577888999999999999999886 6666
Q ss_pred cCCceeEEec---CCCHHHHHHhHhhccEEEcCCC--------eEEecCCCCCChhHHHHHHHHHHH
Q 015435 349 IKQIGMFTFT---GLNSEQVAFMTKEYHIYMTSDG--------RISMAGLSSKTVPHLTDAIHAAVT 404 (407)
Q Consensus 349 ~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~~gg--------Ris~~~~~~e~i~~~~~~l~~~l~ 404 (407)
.+.+. |.|+ +.+.+.+.+.|.++||.+.+++ ||+++ +++++++++++|+++-+
T Consensus 290 ~~~~~-~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~--~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 290 PSQGN-YLFATPPDRDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG--TREEMEQTLAALKEIGE 353 (360)
T ss_dssp CCSSS-EEEEECTTCCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC--CHHHHHHHHHHHHHHHC
T ss_pred CCCcc-EEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHhc
Confidence 65554 4454 3456666666777999998852 99987 78999999999998764
No 75
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=100.00 E-value=3.7e-36 Score=283.69 Aligned_cols=339 Identities=16% Similarity=0.140 Sum_probs=244.9
Q ss_pred CchhhhhHhhhhcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCC
Q 015435 16 DPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPA 95 (407)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~ 95 (407)
..+.+..+.+.. +++++|||+.|.+ +. +.++.+.+++.+.+. ....|+ ..+..++|+++++++ +
T Consensus 10 ~~~~~~~~~~~~-~~~~~idl~~~~~--~~--~~~~~v~~a~~~~~~----~~~~y~-~~~~~~l~~~la~~~-~----- 73 (364)
T 1lc5_A 10 GNIREPATVLGI-SPDQLLDFSANIN--PL--GMPVSVKRALIDNLD----CIERYP-DADYFHLHQALARHH-Q----- 73 (364)
T ss_dssp CCCHHHHHHHTS-CGGGSEECSSCCC--TT--CCCHHHHHHHHHTGG----GGGSCC-CTTCHHHHHHHHHHH-T-----
T ss_pred ccHHHHHHhcCC-CccceEEeccccC--CC--CCCHHHHHHHHHHHH----HhhcCC-CCCHHHHHHHHHHHH-C-----
Confidence 345555554432 3467999999974 22 334455555544443 245674 468999999999998 4
Q ss_pred CCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435 96 IKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA 175 (407)
Q Consensus 96 ~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 175 (407)
+++++|++ |+|+++++.++++. + +||+|+++.|+|.++...++..|.+++.+|...+.++.+ ++++.+.+.
T Consensus 74 ~~~~~v~~--~~g~~~al~~~~~~---~-~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~-- 144 (364)
T 1lc5_A 74 VPASWILA--GNGETESIFTVASG---L-KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALT-- 144 (364)
T ss_dssp SCGGGEEE--ESSHHHHHHHHHHH---H-CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCC--
T ss_pred cCHHHEEE--CCCHHHHHHHHHHH---c-CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhcc--
Confidence 23479999 99999999998533 3 789999999999999999999999999999842222222 466666554
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435 176 PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM 255 (407)
Q Consensus 176 ~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 255 (407)
++++++++ ++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. .... +....++++++.|+||.+
T Consensus 145 ~~~~~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~---~~~~~~~~i~~~s~sK~~ 218 (364)
T 1lc5_A 145 PDLDCLFL-CTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET--GFIP---ALKDNPHIWVLRSLTKFY 218 (364)
T ss_dssp TTCCEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC--CSGG---GCTTCTTEEEEEESTTTT
T ss_pred CCCCEEEE-eCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCcc--chhh---HhccCCCEEEEEECchhh
Confidence 45677666 89999999999999999999999999999999999998886421 1111 113346789999999999
Q ss_pred cccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015435 256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDA 335 (407)
Q Consensus 256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (407)
+++|+|+||+ ++.++++.+.+ ..... .++++.+++.++..++++. +++++.+++++++++++.+.
T Consensus 219 ~~~G~r~G~~--~~~~~~~~~~l----~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~ 283 (364)
T 1lc5_A 219 AIPGLRLGYL--VNSDDAAMARM----RRQQM--PWSVNALAALAGEVALQDS-------AWQQATWHWLREEGARFYQA 283 (364)
T ss_dssp TCTTTCCEEE--ECCCHHHHHHH----HHHSC--TTCSCHHHHHHHHHGGGCH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccceEEE--EECCHHHHHHH----HHhCC--CCCCCHHHHHHHHHHHhCc-------HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 53556554443 33332 3478888999999888863 45778889999999999999
Q ss_pred HHhcCCCCCcccccCCceeEEecCCC--HHHHHHhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHH
Q 015435 336 LSARGTPGDWSHIIKQIGMFTFTGLN--SEQVAFMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 336 l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l 403 (407)
|++.+. +.+..+.+ .|.|+.+. .+.+.+.|.++||.+.+| + ||+++ +++++++++++|++++
T Consensus 284 L~~~~~---~~~~~~~g-~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~ 357 (364)
T 1lc5_A 284 LCQLPL---LTVYPGRA-NYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVL 357 (364)
T ss_dssp HHTSTT---EEECCCSS-SEEEEEESCTTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred HhcCCC---CEECCCCC-eEEEEECCCcHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 988732 66555544 45555442 223444444579999874 2 88876 5678899999998887
Q ss_pred Hhh
Q 015435 404 TRM 406 (407)
Q Consensus 404 ~~~ 406 (407)
+++
T Consensus 358 ~~~ 360 (364)
T 1lc5_A 358 TGI 360 (364)
T ss_dssp ---
T ss_pred hcc
Confidence 654
No 76
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=100.00 E-value=4.1e-36 Score=283.92 Aligned_cols=328 Identities=16% Similarity=0.184 Sum_probs=245.9
Q ss_pred CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCccc
Q 015435 32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTG 111 (407)
Q Consensus 32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~ 111 (407)
..|||+.|.+ . .+.++.+.+++.+.+.+.......|++..+ .++++++++++...++..+++++|++ |+|+++
T Consensus 31 ~~idl~~~~~---~-~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~--~~G~~~ 103 (369)
T 3cq5_A 31 VDIRLNTNEN---P-YPPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWA--ANGSNE 103 (369)
T ss_dssp CSEECSSCCC---C-SCCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEE--ESHHHH
T ss_pred cceeccCCCC---C-CCCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEE--CCChHH
Confidence 3599999974 2 244566777766666411112456866555 79999999997433333345689999 999999
Q ss_pred HHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCC
Q 015435 112 SLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPT 191 (407)
Q Consensus 112 a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPt 191 (407)
++.+++.. .+.+||+|++++|+|.++...++..|.+++.+|. +.++.+|++++++.+.+. +++++++ ++|+|||
T Consensus 104 al~~~~~~--l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~~-~~~~v~~-~~~~npt 177 (369)
T 3cq5_A 104 ILQQLLQA--FGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSR--GADFRIDMDVALEEIRAK-QPDIVFV-TTPNNPT 177 (369)
T ss_dssp HHHHHHHH--HCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEEC--CTTSSCCHHHHHHHHHHH-CCSEEEE-ESSCTTT
T ss_pred HHHHHHHH--hcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecC--CcCCCCCHHHHHHHhhcc-CCCEEEE-eCCCCCC
Confidence 99998533 3679999999999999999999999999999997 345689999999999731 5677776 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC-cEEEEEecCccccccCCCcceeEEeec
Q 015435 192 GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG-ECLVAQSYAKNMGLYGERVGALSIVCK 270 (407)
Q Consensus 192 G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~s~sK~~~~~G~r~G~~~~v~~ 270 (407)
|.+++.+++.+| |+.+++++|+||+|..+.+.. .... +.+..+ +++++.|+||.++++|+|+||+ +++
T Consensus 178 G~~~~~~~l~~l---~~~~~~~li~De~~~~~~~~~---~~~~---~~~~~~~~~i~~~s~sK~~~~~G~r~G~~--~~~ 246 (369)
T 3cq5_A 178 GDVTSLDDVERI---INVAPGIVIVDEAYAEFSPSP---SATT---LLEKYPTKLVVSRTMSKAFDFAGGRLGYF--VAN 246 (369)
T ss_dssp CCCCCHHHHHHH---HHHCSSEEEEECTTGGGCCSC---CGGG---GTTTCTTTEEEEEESSSTTSCGGGCCEEE--EEC
T ss_pred CCCCCHHHHHHH---HHhCCCEEEEECCchhhcCCc---chHH---HHhhCCCCEEEEEechHhcCCcccceEEE--EeC
Confidence 999997777776 556669999999999887531 1111 122334 7899999999999999999999 565
Q ss_pred ChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 015435 271 TEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK 350 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 350 (407)
++ +.+.+..... .++++.+.+.++..++++. +++++.+++++++++++.+.|++.+ +.+..+
T Consensus 247 -~~----~~~~l~~~~~--~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~ 308 (369)
T 3cq5_A 247 -PA----FIDAVMLVRL--PYHLSALSQAAAIVALRHS-------ADTLGTVEKLSVERVRVAARLEELG----YAVVPS 308 (369)
T ss_dssp -TH----HHHHHHTTSC--TTCSCHHHHHHHHHHHHTH-------HHHHTHHHHHHHHHHHHHHHHHHHT----CEEECC
T ss_pred -HH----HHHHHHHcCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHhCC----CEECCC
Confidence 33 4444444333 2368888899888888764 4467788889999999999998876 565554
Q ss_pred CceeEEecCC--CHHHHHHhHhhccEEEcCCC-----eEEecCCCCCChhHHHHHHHHHHH
Q 015435 351 QIGMFTFTGL--NSEQVAFMTKEYHIYMTSDG-----RISMAGLSSKTVPHLTDAIHAAVT 404 (407)
Q Consensus 351 ~~~~~~~~~~--~~~~~~~~l~~~gi~~~~gg-----Ris~~~~~~e~i~~~~~~l~~~l~ 404 (407)
. +.|.|+.+ +.+.+.+.|.++||.+.+++ ||+++ +++++++++++|+++++
T Consensus 309 ~-~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~iRis~~--~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 309 E-SNFVFFGDFSDQHAAWQAFLDRGVLIRDVGIAGHLRTTIG--VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp S-SSEEEEECCSSHHHHHHHHHHTTEECBCCSCTTEEEEECC--CHHHHHHHHHHHHHHHT
T ss_pred C-CeEEEEECCCCHHHHHHHHHHCCEEEEECCCCCeEEEEeC--CHHHHHHHHHHHHHHHh
Confidence 4 45666654 45555555667999999873 88887 67889999999998875
No 77
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=100.00 E-value=1.1e-39 Score=311.02 Aligned_cols=341 Identities=12% Similarity=0.103 Sum_probs=259.6
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT 110 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t 110 (407)
.++|||+.|.+ +. +.++.+.+++.+.+. ....+|.+. ..++++++++++....+..+++++|++ |+|++
T Consensus 31 ~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~---~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--~~g~~ 99 (392)
T 3b1d_A 31 PQLLPAWIADM---DF-EVMPEVKQAIHDYAE---QLVYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVF--VEGVV 99 (392)
Confidence 48999999986 33 556666666666664 224567554 889999999998554554456789999 99999
Q ss_pred cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCC-CCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435 111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPA-TRGLNFQGLLEDLRAAPSGAIVLLHACAHN 189 (407)
Q Consensus 111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N 189 (407)
+++.++++.+ +.+||+|+++.|+|..+...++..|.+++.++..+++ ++.+|++++++.+.+ ++++++++ ++|+|
T Consensus 100 ~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-~~~~~v~~-~~~~n 175 (392)
T 3b1d_A 100 PAISIAIQAF--TKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE-NDVKLYLL-CNPHN 175 (392)
Confidence 9999995433 6789999999999999999999999999999884222 255899999998863 24566666 89999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc-CCcEEEEEecCccccccCCCcceeEEe
Q 015435 190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD-GGECLVAQSYAKNMGLYGERVGALSIV 268 (407)
Q Consensus 190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~r~G~~~~v 268 (407)
|||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+... .++++++.|+||.++++|+|+||+ +
T Consensus 176 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~--~ 251 (392)
T 3b1d_A 176 PGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGH--EHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYA--I 251 (392)
Confidence 999999999999999999999999999999999987642 12233222221 467899999999999999999999 5
Q ss_pred ecChhhHHHHHHHHhhhhhccc-CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcc
Q 015435 269 CKTEDVASRVESQLKLVIRPMY-SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDWS 346 (407)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~ 346 (407)
++++++.+. +........ .+++.++|.++..++++.. +++++.+++++++++++.+.|++ .+. +.
T Consensus 252 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~ 318 (392)
T 3b1d_A 252 IENPTLCAQ----FKHQQLVNNHHEVSSLGYIATETAYRYGK------PWLVALKAVLEENIQFAVEYFAQEAPR---LK 318 (392)
Confidence 765444443 433333332 2567788888887777532 45778888999999999999987 432 67
Q ss_pred cccCCceeEEecCCC-----HHH-HHHhHhhccEEEcCC--------C--eEEecCCCCCChhHHHHHHHHHHH
Q 015435 347 HIIKQIGMFTFTGLN-----SEQ-VAFMTKEYHIYMTSD--------G--RISMAGLSSKTVPHLTDAIHAAVT 404 (407)
Q Consensus 347 ~~~~~~~~~~~~~~~-----~~~-~~~~l~~~gi~~~~g--------g--Ris~~~~~~e~i~~~~~~l~~~l~ 404 (407)
+..+.++++.|+.+. ... ...+++++||.+.|| + ||+++. +++++++++++|+++++
T Consensus 319 ~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 319 VMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA-PKSLVEEICKRIVCCLP 391 (392)
Confidence 778889999887653 223 344555789999875 1 999886 78999999999998875
No 78
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=100.00 E-value=8e-37 Score=290.71 Aligned_cols=329 Identities=12% Similarity=0.080 Sum_probs=233.5
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhc--cccccccCCCCCCc-----HHHHHHHHHHHhCCCCCCCCC-C
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN--DQSRVKEYLPIVGL-----VDFNKLSAKLILGADSPAIKD-N 99 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~~~g~-----~~l~~~~a~~~~~~~~~~~~~-~ 99 (407)
.+++++|||+.|.+ +. +.| +.+..+...... ......+|++..|. +++|+++++++. .++..+.+ +
T Consensus 19 ~~~~~~i~l~~g~p---~~-~~~-~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~ 92 (391)
T 3bwn_A 19 PMSDFVVNLDHGDP---TA-YEE-YWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDR 92 (391)
T ss_dssp CTTTSCEECSSCCC---GG-GHH-HHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSS
T ss_pred cCCCCeeEcCCCCC---CC-CCC-HHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCC
Confidence 35678999999985 32 333 333332211110 11134679889998 999999999984 45555555 5
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCC----eEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQL----TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA 175 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd----~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 175 (407)
+|++ |+|+++++.+++.. .+.+|| +|++++|+|..+...++..|.+++.++++ .+ +++ .
T Consensus 93 ~i~~--t~G~~~al~~~~~~--l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-~~--~l~--------~-- 155 (391)
T 3bwn_A 93 YIVV--GTGSTQLCQAAVHA--LSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGD-AW--GFD--------K-- 155 (391)
T ss_dssp EEEE--EEHHHHHHHHHHHH--HHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEE-ST--TCC--------C--
T ss_pred eEEE--eCChHHHHHHHHHH--hcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCC-HH--HcC--------C--
Confidence 8999 99999999999543 367999 99999999999999999999999999884 32 222 1
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435 176 PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM 255 (407)
Q Consensus 176 ~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 255 (407)
++++++++ ++||||||.+++ +|++.++.++++||+||+|.. .. ..++ ....+++++++||||.|
T Consensus 156 ~~~k~v~l-~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~---~~----~~~l---~~~~~~~i~~~S~SK~~ 219 (391)
T 3bwn_A 156 KGPYIELV-TSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW---PH----YTPI---TRRQDHDIMLFTFSKIT 219 (391)
T ss_dssp CSCEEEEE-ESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS---TT----TSCC---CCCBCCSEEEEEHHHHH
T ss_pred CCCEEEEE-CCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC---CC----CCcc---ccCCCCeEEEEechhhc
Confidence 45677666 999999999996 354422333499999999973 11 0111 11346899999999999
Q ss_pred cccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhH----HhHHHHHHHHHHHHHHHHHH
Q 015435 256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMY----KEWTLELKAMADRIISMRQQ 331 (407)
Q Consensus 256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~ 331 (407)
|++|+|+||+ +++++++.+ .+.........+++.++|.++..++++.... +.+.+++++.++++++++++
T Consensus 220 g~~GlRiG~~--~~~~~~l~~----~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (391)
T 3bwn_A 220 GHAGSRIGWA--LVKDKEVAK----KMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEK 293 (391)
T ss_dssp SCGGGCEEEE--EECCHHHHH----HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHH
T ss_pred CCCccceEEE--EecCHHHHH----HHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999 564555444 4444444334588999999999888754200 00125678889999999999
Q ss_pred HHHHHHhcCCCCCccccc-------------CCceeEEecCCC-HHHHHHhHhhccEEEcCC-------C--eEEecCCC
Q 015435 332 LFDALSARGTPGDWSHII-------------KQIGMFTFTGLN-SEQVAFMTKEYHIYMTSD-------G--RISMAGLS 388 (407)
Q Consensus 332 l~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~g-------g--Ris~~~~~ 388 (407)
+.+.|++.+. +.+.. +.+|+|.|+++. .+.+.++++++||.+.|| + |||++. +
T Consensus 294 l~~~L~~~~~---~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~-~ 369 (391)
T 3bwn_A 294 LREVVKESDA---FTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKVMSRAGERCGSDKKHVRVSMLS-R 369 (391)
T ss_dssp HHHHHHTCSS---EECCCCCCEEETTTTEEECCCCSEEEEEESSSCCHHHHHHHTTEECEEGGGGTCCTTEEEEESCS-C
T ss_pred HHHHHHhCCC---cccccCCccccccccccCCCcceEEEecCCcHHHHHHHHHHCCEEEccCCCCCCCCCEEEEEecC-C
Confidence 9999998731 44332 345668888764 356777888899999985 2 999996 8
Q ss_pred CCChhHHHHHHHHHHHh
Q 015435 389 SKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 389 ~e~i~~~~~~l~~~l~~ 405 (407)
++++++++++|++++++
T Consensus 370 ~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 370 EDVFNVFLERLANMKLI 386 (391)
T ss_dssp HHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88899999999987653
No 79
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=100.00 E-value=2e-35 Score=275.52 Aligned_cols=310 Identities=16% Similarity=0.171 Sum_probs=231.4
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT 110 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t 110 (407)
+++|||+.|.+ .. +.++.+.+++.+.+. ....+.|+. .+..++|+++++++ +.. .+++++|++ |+|++
T Consensus 19 ~~~i~l~~~~~---~~-~~~~~v~~a~~~~~~--~~~~~~y~~-~~~~~lr~~la~~~-~~~--~~~~~~v~~--~~G~~ 86 (335)
T 1uu1_A 19 RDKTYLALNEN---PF-PFPEDLVDEVFRRLN--SDALRIYYD-SPDEELIEKILSYL-DTD--FLSKNNVSV--GNGAD 86 (335)
T ss_dssp CCSEEESSCCC---SS-CCCHHHHHHHHHTCC--GGGGGSCCC-SSCHHHHHHHHHHH-TCS--SCCGGGEEE--ESSHH
T ss_pred CcceECCCCCC---CC-CCCHHHHHHHHHHhh--hhhhhcCCC-CchHHHHHHHHHHc-CCC--CCCHHHEEE--cCChH
Confidence 57899999974 22 445566666655552 123456744 57999999999999 422 344689999 99999
Q ss_pred cHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCC
Q 015435 111 GSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNP 190 (407)
Q Consensus 111 ~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NP 190 (407)
+++.+++ ..+ ||+|+++ |+|..+...++..|.+++.+|.+ .++.+|++++ ++++++++ ++||||
T Consensus 87 ~al~~~~---~~~--gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l-------~~~~~v~l-~~p~np 150 (335)
T 1uu1_A 87 EIIYVMM---LMF--DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLT--KDLRIPEVNV-------GEGDVVFI-PNPNNP 150 (335)
T ss_dssp HHHHHHH---HHS--SEEEECS-SSCHHHHHHHHHHTCEEEECCCC--TTSCCCCCCC-------CTTEEEEE-ESSCTT
T ss_pred HHHHHHH---HHh--CCcEEEC-CCcHHHHHHHHHcCCeEEEeccC--CCCCCCHHHc-------CCCCEEEE-eCCCCC
Confidence 9999984 233 8999999 99999999999999999999883 3467888887 24677776 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeec
Q 015435 191 TGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCK 270 (407)
Q Consensus 191 tG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~ 270 (407)
||.+++.+++++|+++| | ++|+||+|.++...+ ... +....+++++++|+||.+|++|+|+||+ +++
T Consensus 151 tG~~~~~~~l~~l~~~~---~-~li~De~~~~~~~~~----~~~---~~~~~~~~i~~~s~sK~~g~~G~r~G~~--~~~ 217 (335)
T 1uu1_A 151 TGHVFEREEIERILKTG---A-FVALDEAYYEFHGES----YVD---FLKKYENLAVIRTFSKAFSLAAQRVGYV--VAS 217 (335)
T ss_dssp TCCCCCHHHHHHHHHTT---C-EEEEECTTHHHHCCC----CGG---GGGTCSSEEEEEESTTTTTCGGGCCEEE--EEC
T ss_pred CCCCCCHHHHHHHHHhC---C-EEEEECcchhhcchh----HHH---HhhhCCCEEEEecchhhcCCcccCeEEE--EeC
Confidence 99999999999998877 7 899999998876431 111 1233567899999999999999999999 564
Q ss_pred ChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC
Q 015435 271 TEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK 350 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 350 (407)
+++ .+.+..... .++++.+++.++..++++. ++.++.+++++++++++.+.|++.| +.+.+
T Consensus 218 -~~~----~~~l~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~- 278 (335)
T 1uu1_A 218 -EKF----IDAYNRVRL--PFNVSYVSQMFAKVALDHR-------EIFEERTKFIVEERERMKSALREMG----YRITD- 278 (335)
T ss_dssp -HHH----HHHHHHHSC--TTCSCHHHHHHHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHT----CCBCC-
T ss_pred -HHH----HHHHHHhcC--CCCcCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----cEEcC-
Confidence 444 444443332 2478889999999888763 4466778889999999999998876 55443
Q ss_pred CceeEEecCCC---HHHHHHhHhhccEEEcCCC---eEEecCCCCCChhHHHHHHHHH
Q 015435 351 QIGMFTFTGLN---SEQVAFMTKEYHIYMTSDG---RISMAGLSSKTVPHLTDAIHAA 402 (407)
Q Consensus 351 ~~~~~~~~~~~---~~~~~~~l~~~gi~~~~gg---Ris~~~~~~e~i~~~~~~l~~~ 402 (407)
.++.|.|+.+. .+.+.+.|.++||.+.++. ||+++. ++++++++++|+++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~iRis~~~--~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 279 SRGNFVFVFMEKEEKERLLEHLRTKNVAVRSFREGVRITIGK--REENDMILRELEVF 334 (335)
T ss_dssp CCSSEEEEECCTHHHHHHHHHHHHHTEEEEEETTEEEEECCC--HHHHHHHHHHHHCC
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCCeEEEEeCC--HHHHHHHHHHHHhh
Confidence 45667787664 3344444556899998743 999874 56799998888754
No 80
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=100.00 E-value=2.8e-34 Score=269.32 Aligned_cols=314 Identities=12% Similarity=0.118 Sum_probs=228.3
Q ss_pred CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435 30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG 109 (407)
Q Consensus 30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~ 109 (407)
++++|||+.|.+ ..+.++.+.+++.+.+. ....|++..+ .++|+++++++ + +++++|++ |+|+
T Consensus 14 g~~~id~~~~~~----~~~~~~~v~~a~~~~~~----~~~~y~~~~~-~~lr~~la~~~-~-----~~~~~i~~--t~g~ 76 (350)
T 3fkd_A 14 SSEIVNFSTTVW----TDGDKDHLEKHLVENLN----CIRHYPEPDA-GTLRQMLAKRN-S-----VDNNAILV--TNGP 76 (350)
T ss_dssp --CCEECSCCSC----CCSCCHHHHHHHHHTGG----GGGSCCCTTC-HHHHHHHHHHT-T-----CCGGGEEE--ESHH
T ss_pred cccEEEccCCCC----CCCCCHHHHHHHHHhHh----HHhcCCCCcH-HHHHHHHHHHh-C-----cCHHHEEE--cCCH
Confidence 479999999974 22445555555544442 3556866655 89999999988 4 33579999 9999
Q ss_pred ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435 110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN 189 (407)
Q Consensus 110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N 189 (407)
++++.++++. +. ||+|+++.|+|..+...++..|.+++.+++.++ ..++++ ++++++++ ++|+|
T Consensus 77 ~~al~~~~~~---l~-gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~----------~~~~~v~i-~~p~n 140 (350)
T 3fkd_A 77 TAAFYQIAQA---FR-GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNED-IGEADF----------SNMDFCWL-CNPNN 140 (350)
T ss_dssp HHHHHHHHHH---TT-TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSC-GGGSCC----------TTCSEEEE-ESSCT
T ss_pred HHHHHHHHHH---HC-CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCc-cccCcc----------CCCCEEEE-eCCCC
Confidence 9999999533 33 999999999999999999999999999998212 133443 35677777 89999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435 190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC 269 (407)
Q Consensus 190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~ 269 (407)
|||.+++.+++.+|++.|+++ ++|+||+|.++.+.+... . ......+++++++||||.++++|+|+||+ ++
T Consensus 141 ptG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~-~----~~~~~~~~~i~~~S~sK~~~~~G~r~G~~--~~ 211 (350)
T 3fkd_A 141 PDGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIR-P----ADIKGRKNLVMVYSFSHAYGIPGLRIGYI--VA 211 (350)
T ss_dssp TTCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCC-G----GGGTTCSSEEEEEESHHHHSCGGGCCEEE--EC
T ss_pred CcCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcchh-h----HHhhcCCCEEEEecCchhccCcchheEeE--Ee
Confidence 999999999999998888766 999999999988764311 1 12234578899999999999999999999 46
Q ss_pred cChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435 270 KTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII 349 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 349 (407)
+++ +.+.+..... .++++.+++.++..++++.. .+.+..++.. ++++++.+.|++.+. +.+.+
T Consensus 212 -~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~-~~~~~l~~~L~~~~~---~~~~~ 274 (350)
T 3fkd_A 212 -NKD----FMKRVAAFST--PWAVNALAIEAAKFILIHPA------QFTLPIRKWQ-RNTVDFITALNRLDG---VEVHP 274 (350)
T ss_dssp -CHH----HHHHHHTTCC--TTCSCHHHHHHHHHHHHCTT------TTCCCHHHHH-HHHHHHHHHHHHSTT---EEECC
T ss_pred -CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHHhCHH------HHHHHHHHHH-HHHHHHHHHHhcCCC---cEECC
Confidence 444 4444444433 34788899999998888653 1122333333 788899999988732 66666
Q ss_pred CCceeEEecCC---CHHHHH-HhHhhccEEEcCCC----------eEEecCCCCCChhHHHHHHHHHHHh
Q 015435 350 KQIGMFTFTGL---NSEQVA-FMTKEYHIYMTSDG----------RISMAGLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 350 ~~~~~~~~~~~---~~~~~~-~~l~~~gi~~~~gg----------Ris~~~~~~e~i~~~~~~l~~~l~~ 405 (407)
+.+++ .|+.+ +.+.+. .+++++||.+.+|. ||+++ +++++++++++|++++++
T Consensus 275 ~~~~~-~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 275 SGTTF-FLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp CSSSE-EEEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHTC
T ss_pred CCCcE-EEEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHH
Confidence 55554 44432 455544 45454899998762 88887 568889999999988754
No 81
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=3.4e-33 Score=266.55 Aligned_cols=332 Identities=12% Similarity=0.057 Sum_probs=232.8
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
+++++|||+.|.+ .+.+.++.+.+++.+.+.........|.+..|..++++++++++....+ .+++++ |+|
T Consensus 41 ~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g----~~~v~~--~~g 111 (398)
T 3a2b_A 41 DGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG----KEAAIL--FST 111 (398)
T ss_dssp TTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT----CSEEEE--ESS
T ss_pred CCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC----CCcEEE--ECC
Confidence 4568999999964 3434566666666666641111223455566776777777766633222 168999 999
Q ss_pred cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC--CCcEEEEecC
Q 015435 109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP--SGAIVLLHAC 186 (407)
Q Consensus 109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~--~~~~v~i~~~ 186 (407)
|++++.+++ ...+.+||.|++++|+|..+...++..|.+++.+|. +|++++++.+.+.. +++++++ ++
T Consensus 112 gt~a~~~~~--~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~-~~ 181 (398)
T 3a2b_A 112 GFQSNLGPL--SCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICT-DG 181 (398)
T ss_dssp HHHHHHHHH--HHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEE-ES
T ss_pred HHHHHHHHH--HHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEE-eC
Confidence 999999984 444779999999999999999999999999998865 58899999998432 4556555 89
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc-EEEEEecCccccccCCCccee
Q 015435 187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE-CLVAQSYAKNMGLYGERVGAL 265 (407)
Q Consensus 187 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~s~sK~~~~~G~r~G~~ 265 (407)
|+||||.+.+ +++|+++|++||+++|+||+|..+.++.. ..++.......++ +++++|+||.++++| ||+
T Consensus 182 ~~nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~ 252 (398)
T 3a2b_A 182 IFSMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHK---GAGTASHFGLNDDVDLIMGTFSKSLASLG---GFV 252 (398)
T ss_dssp BCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG---GCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEE
T ss_pred CCCCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCCC---CCchHhhcCCCcCCeEEEecccccccCCC---cEE
Confidence 9999999886 78888889999999999999988765311 1112111122234 699999999999778 998
Q ss_pred EEeecChhhHHHHHHHHhhh-hhcccCCCChhHHH-HHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015435 266 SIVCKTEDVASRVESQLKLV-IRPMYSSPPIHGAS-IVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG 343 (407)
Q Consensus 266 ~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 343 (407)
+++ +++.+. +... ......+++.+.+. ++..+++.. ++.++.+++++++++++.+.|++.+
T Consensus 253 --~~~-~~~~~~----l~~~~~~~~~~~~~~~~~~a~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g--- 315 (398)
T 3a2b_A 253 --AGD-ADVIDF----LKHNARSVMFSASMTPASVASTLKALEII-------QNEPEHIEKLWKNTDYAKAQLLDHG--- 315 (398)
T ss_dssp --EEC-HHHHHH----HHHHCHHHHSSBCCCHHHHHHHHHHHHHH-------HHCTHHHHHHHHHHHHHHHHHHHTT---
T ss_pred --EeC-HHHHHH----HHHhcccceecCCCCHHHHHHHHHHHHHH-------hhCHHHHHHHHHHHHHHHHHHHhcC---
Confidence 465 444443 3332 11222344455555 445566432 2356778889999999999999886
Q ss_pred CcccccCCceeEEecCCC----HHHHHHhHhhccEEEcCC---------C--eEEecC-CCCCChhHHHHHHHHHHHhhC
Q 015435 344 DWSHIIKQIGMFTFTGLN----SEQVAFMTKEYHIYMTSD---------G--RISMAG-LSSKTVPHLTDAIHAAVTRMG 407 (407)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi~~~~g---------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~ 407 (407)
+.+..+. +++.|+.+. .+.+.+.|.++||.+.++ + ||+++. .+++++++++++|++++++++
T Consensus 316 -~~~~~~~-g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~ 393 (398)
T 3a2b_A 316 -FDLGATE-SPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAE 393 (398)
T ss_dssp -CCBCSCC-SSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred -CCcCCCC-CCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhC
Confidence 5655565 467777553 333444444469999875 2 999885 488999999999999998764
No 82
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=100.00 E-value=9.6e-35 Score=279.15 Aligned_cols=330 Identities=12% Similarity=0.058 Sum_probs=236.8
Q ss_pred CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCC-C---cHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435 30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIV-G---LVDFNKLSAKLILGADSPAIKDNRVTTVQ 105 (407)
Q Consensus 30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-g---~~~l~~~~a~~~~~~~~~~~~~~~i~~~~ 105 (407)
...+|+|+.|.+ +. +.++.+.+++.+.+.........|.+.. | .+++|+++++++...++..+++++|++
T Consensus 55 ~~~~i~l~~g~~---~~-~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~-- 128 (427)
T 2hox_A 55 QGCSADVASGDG---LF-LEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVF-- 128 (427)
T ss_dssp TTCCEECCSCCC---GG-GHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEE--
T ss_pred CCceEEecCcCC---CC-CCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEE--
Confidence 457899999985 32 3333444444444421111223488877 8 999999999999544444466789999
Q ss_pred cCCcccHHHHHHHHHHh--------hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCC
Q 015435 106 CLSGTGSLRVGAEFLAR--------HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPS 177 (407)
Q Consensus 106 t~g~t~a~~~~~~~~~~--------~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 177 (407)
|+|+++++.+++ ... +.+||+|+++.|+|..+...++..|.+++.+. +|++++++.+. ++
T Consensus 129 t~G~~~al~~~~--~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~--~~ 196 (427)
T 2hox_A 129 GVGVTQLIHGLV--ISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWA--------GNAANYVNVSN--PE 196 (427)
T ss_dssp ESHHHHHHHHHH--HHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEE--------EEGGGGTTCSC--GG
T ss_pred eCCHHHHHHHHH--HHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeeec--------CCHHHHHHhhc--CC
Confidence 999999999994 444 67999999999999999999999999887543 46778877665 34
Q ss_pred CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccc
Q 015435 178 GAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGL 257 (407)
Q Consensus 178 ~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 257 (407)
++++++ ++||||||.+++ +. ++ ++..|.|++|.+ + ..++..+ . .+++++++||||.+++
T Consensus 197 ~k~v~l-~~p~NPtG~~~~-~~-------l~--~~~~i~d~~~~~----~----~~s~~~~-~-~~~~i~~~S~SK~~g~ 255 (427)
T 2hox_A 197 QYIEMV-TSPNNPEGLLRH-AV-------IK--GCKSIYDMVYYW----P----HYTPIKY-K-ADEDILLFTMSKFTGH 255 (427)
T ss_dssp GEEEEE-ESSCTTTCCCCC-CS-------ST--TCEEEEECTTCS----T----TTSCCCS-C-BCCSEEEEEHHHHTSC
T ss_pred ceEEEE-cCCCCCcccccH-HH-------Hc--CCCEEEeecccC----C----CCCcccc-C-CCceEEEEeChhcCCC
Confidence 566666 899999999999 42 22 556777777642 1 1111111 1 5689999999999999
Q ss_pred cCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChh-hHH----hHHHHHHHHHHHHHHHHHHH
Q 015435 258 YGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDST-MYK----EWTLELKAMADRIISMRQQL 332 (407)
Q Consensus 258 ~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~----~~~~~~~~~~~~~~~~~~~l 332 (407)
+|+|+||+ +++++++.+. +.........+++.+.|.++..+|++.. ..+ .+.+++++.+++++++++++
T Consensus 256 ~G~RiG~~--~~~~~~l~~~----l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 329 (427)
T 2hox_A 256 SGSRFGWA--LIKDESVYNN----LLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329 (427)
T ss_dssp GGGCCEEE--EECCHHHHHH----HHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHH
T ss_pred CCceEEEE--EECCHHHHHH----HHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999 6766665554 4444444455788999999888887531 000 12345777889999999999
Q ss_pred HHHHHhc-CCCC----------CcccccCCceeEEecCCC---HHHHHHhHhhccEEEcCC-------C--eEEecCCCC
Q 015435 333 FDALSAR-GTPG----------DWSHIIKQIGMFTFTGLN---SEQVAFMTKEYHIYMTSD-------G--RISMAGLSS 389 (407)
Q Consensus 333 ~~~l~~~-~~~~----------~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~~~~g-------g--Ris~~~~~~ 389 (407)
.+.|++. +... .+.+..|.+++|.|+++. .+++..+++++||.+.|| + |||++. ++
T Consensus 330 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~-~~ 408 (427)
T 2hox_A 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK-TQ 408 (427)
T ss_dssp HHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS-CH
T ss_pred HHHHHhCcCccccccccccccccccccCCCCceEEEEECCCcHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecC-CH
Confidence 9999886 3110 023346778999998774 234667777899999885 2 999997 88
Q ss_pred CChhHHHHHHHHHHHh
Q 015435 390 KTVPHLTDAIHAAVTR 405 (407)
Q Consensus 390 e~i~~~~~~l~~~l~~ 405 (407)
+++++++++|++++++
T Consensus 409 e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 409 DDFDQLMYYLKDMVKA 424 (427)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8999999999998753
No 83
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.98 E-value=4.4e-31 Score=251.86 Aligned_cols=333 Identities=11% Similarity=0.040 Sum_probs=224.1
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc----cccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ----SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV 104 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~ 104 (407)
+++++|||+.|.+ .|.+.++.+.+++.+.+.+.. .....|+...+..++++.+++++ +. ++.++
T Consensus 41 ~g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-~~-------~~~i~- 108 (399)
T 3tqx_A 41 GEKEVLNFCANNY---LGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL-GT-------DDTIL- 108 (399)
T ss_dssp TTEEEEECSSCCT---TSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH-TC-------SEEEE-
T ss_pred CCeeEEEeeccCc---ccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH-CC-------CcEEE-
Confidence 4578999999953 452345566666666654100 00111223445789999999988 43 23444
Q ss_pred ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC----CCcE
Q 015435 105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP----SGAI 180 (407)
Q Consensus 105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~----~~~~ 180 (407)
+++|++++..++ ...+.+||.|+++.|+|..+...++..|.+++.++. .|++++++.+.+.. ++++
T Consensus 109 -~~sGt~a~~~~l--~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~ 178 (399)
T 3tqx_A 109 -YSSCFDANGGLF--ETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKL 178 (399)
T ss_dssp -ESCHHHHHHTTH--HHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEE
T ss_pred -ECchHHHHHHHH--HHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceE
Confidence 455688988874 444789999999999999999999999999988875 46778888876321 4556
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCC
Q 015435 181 VLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGE 260 (407)
Q Consensus 181 v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 260 (407)
+++ ++|+||||.+++ +++|+++|++||+++|+||+|.....+... . .....+....+..++++|+||.++ |+
T Consensus 179 v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~-~~~~~~~~~~~~di~~~s~sK~~~--g~ 250 (399)
T 3tqx_A 179 IAT-DGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGENG-R-GTPEYCGVADRVDILTGTLGKALG--GA 250 (399)
T ss_dssp EEE-ESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTS-C-CHHHHHTCTTCCSEEEEESSSSSC--SS
T ss_pred EEE-eCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCC-C-chHHhhCCCCCCcEEEecchHhcc--cC
Confidence 555 889999999988 889999999999999999999633222111 1 111111112355699999999998 45
Q ss_pred CcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435 261 RVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG 340 (407)
Q Consensus 261 r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 340 (407)
+.||+ +++ +++.+.+........ ...+++...+.++...++... ++.++.+++++++++++.+.|++.+
T Consensus 251 ~gG~~--~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~g 319 (399)
T 3tqx_A 251 SGGYT--SGH-KEIIEWLRNRSRPYL--FSNTVAPVIVATSLKVLELLK------TEGPQLRKQLQENSRYFRAGMEKLG 319 (399)
T ss_dssp CCEEE--EEC-HHHHHHHHHHCHHHH--SSCCCCHHHHHHHHHHHHHHH------HTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEE--EcC-HHHHHHHHHhCccee--ccCCCcHHHHHHHHHHHHHHh------hccHHHHHHHHHHHHHHHHHHHHcC
Confidence 55998 455 444444333211111 223556666666666654321 3467888999999999999999987
Q ss_pred CCCCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCC-------C----eEEec-CCCCCChhHHHHHHHHHHH
Q 015435 341 TPGDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSD-------G----RISMA-GLSSKTVPHLTDAIHAAVT 404 (407)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~g-------g----Ris~~-~~~~e~i~~~~~~l~~~l~ 404 (407)
+.+..+.+++ .|+.+ +.+.+.+.|.++||.+.++ + ||+++ ..+++++++++++|+++++
T Consensus 320 ----~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 394 (399)
T 3tqx_A 320 ----FQLVPGNHPI-IPVMLGDAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGK 394 (399)
T ss_dssp ----CCBCCCSSSE-EEEEEECHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ----CCcCCCCCCE-EEEEeCCHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence 6666666654 44433 2334444444579999853 2 89886 3588999999999999998
Q ss_pred hhC
Q 015435 405 RMG 407 (407)
Q Consensus 405 ~~~ 407 (407)
+++
T Consensus 395 ~~~ 397 (399)
T 3tqx_A 395 KLG 397 (399)
T ss_dssp HTT
T ss_pred Hhc
Confidence 865
No 84
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.97 E-value=1.2e-30 Score=250.52 Aligned_cols=329 Identities=16% Similarity=0.133 Sum_probs=232.4
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhcccc----ccccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS----RVKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTV 104 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~ 104 (407)
+++|+|+.|.+ + +.|+.+.+++.+.+..... ....|++ ..+..++++.+++++ +.. +++++++
T Consensus 27 ~~~i~l~~~~~----~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~-~~~----~~~~v~~- 95 (420)
T 1t3i_A 27 HPLVYLDNAAT----S-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI-NAR----SPREIVY- 95 (420)
T ss_dssp EECEECBTTTC----C-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT-TCS----CGGGEEE-
T ss_pred CceEEecCCcc----C-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHc-CCC----CCCeEEE-
Confidence 45899998874 3 5566777776666641110 1234543 467889999999998 431 2478999
Q ss_pred ecCCcccHHHHHHHHHH--hhcCCCeEEecCCCCCC----hHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCC
Q 015435 105 QCLSGTGSLRVGAEFLA--RHYHQLTIYIPQPTWGN----HPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSG 178 (407)
Q Consensus 105 ~t~g~t~a~~~~~~~~~--~~~~gd~Vi~~~p~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 178 (407)
|+|+++++.+++..+. .+.+||+|+++.|+|.. +...++..|.+++.++.+ .++.+|++++++++. +++
T Consensus 96 -~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~--~~~ 170 (420)
T 1t3i_A 96 -TRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQESFDLEHFKTLLS--EKT 170 (420)
T ss_dssp -ESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TTSSBCHHHHHHHCC--TTE
T ss_pred -cCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccC--CCCCcCHHHHHHhhC--CCc
Confidence 9999999999953331 16799999999999998 456667889999999983 456799999999987 455
Q ss_pred cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccccc
Q 015435 179 AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLY 258 (407)
Q Consensus 179 ~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 258 (407)
+++++ ++|+||||.+++ +++|+++|++||+++|+|++|..+... . + +..+ +..+++.|+||.++.+
T Consensus 171 ~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-~--~---~~~~----~~di~~~s~sK~~~~~ 236 (420)
T 1t3i_A 171 KLVTV-VHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHYP-L--D---VQLI----DCDWLVASGHKMCAPT 236 (420)
T ss_dssp EEEEE-ESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC-C--C---HHHH----TCSEEEEEGGGTTSCT
T ss_pred eEEEE-eCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCcc-C--c---hhhc----CCCEEEEehhhhcCCC
Confidence 66655 899999999988 788888899999999999998754431 1 1 1111 3568899999988877
Q ss_pred CCCcceeEEeecChhhHHHHHHHHhhhhhc--------------------ccCCCChhHHHHHHH-HhcChhhHHhHHHH
Q 015435 259 GERVGALSIVCKTEDVASRVESQLKLVIRP--------------------MYSSPPIHGASIVAT-ILKDSTMYKEWTLE 317 (407)
Q Consensus 259 G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ 317 (407)
| +||+ +++ ++ +.+.+...... ...+++.+.+.++.. +++... ...
T Consensus 237 g--~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-----~~~ 302 (420)
T 1t3i_A 237 G--IGFL--YGK-EE----ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT-----DLG 302 (420)
T ss_dssp T--CEEE--EEC-HH----HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH-----HHC
T ss_pred c--eEEE--EEc-hH----HHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH-----HhH
Confidence 7 8998 465 43 44444332211 112345555554433 333211 013
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC------ceeEEec--CCCHHHHHHhHhhccEEEcCC----------
Q 015435 318 LKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ------IGMFTFT--GLNSEQVAFMTKEYHIYMTSD---------- 379 (407)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~l~~~gi~~~~g---------- 379 (407)
+++.+++++++++++.+.|++.+. +.+..+. ++++.|. +.+.+.+.+.|.++||.+.++
T Consensus 303 ~~~~~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~ 379 (420)
T 1t3i_A 303 MENIHNYEVELTHYLWQGLGQIPQ---LRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRL 379 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTT---EEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC---eEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccchHHHHh
Confidence 567788899999999999998731 6655543 6666654 335566667777899999886
Q ss_pred ---C---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 380 ---G---RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 380 ---g---Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
. ||+++. .+++++++++++|+++++.+
T Consensus 380 ~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~ 413 (420)
T 1t3i_A 380 FDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 413 (420)
T ss_dssp TTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2 999875 47789999999999998765
No 85
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.97 E-value=2.8e-30 Score=246.77 Aligned_cols=331 Identities=15% Similarity=0.134 Sum_probs=232.5
Q ss_pred CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc------cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435 30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK------EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTT 103 (407)
Q Consensus 30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~ 103 (407)
++++++|..+.+ + +.|+.+.+++.+.+.+.....+ .|.+..+..++++.+++++ +.. ++++|++
T Consensus 21 g~~~i~l~~~~~----~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~~~----~~~~v~~ 90 (406)
T 1kmj_A 21 GLPLAYLDSAAS----A-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI-NAR----SAEELVF 90 (406)
T ss_dssp TEECEECCTTTC----C-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT-TCS----CGGGEEE
T ss_pred CCceEEecCCcc----C-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHc-CCC----CCCeEEE
Confidence 346888888764 3 5566777777666651111111 1234567889999999988 431 2479999
Q ss_pred eecCCcccHHHHHHHHHHh--hcCCCeEEecCCCCCChH----HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCC
Q 015435 104 VQCLSGTGSLRVGAEFLAR--HYHQLTIYIPQPTWGNHP----KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPS 177 (407)
Q Consensus 104 ~~t~g~t~a~~~~~~~~~~--~~~gd~Vi~~~p~y~~~~----~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 177 (407)
|+|+|+++.+++..+.. +.+||+|+++.|+|++.. ..++..|.+++.+|.. .++.+|++++++.+. ++
T Consensus 91 --~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~l~--~~ 164 (406)
T 1kmj_A 91 --VRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLN--PDGTLQLETLPTLFD--EK 164 (406)
T ss_dssp --ESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBC--TTSCBCGGGHHHHCC--TT
T ss_pred --eCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecC--CCCCcCHHHHHHHhc--cC
Confidence 99999999999533311 579999999999987654 3456789999999983 356789999999987 45
Q ss_pred CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccc
Q 015435 178 GAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGL 257 (407)
Q Consensus 178 ~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 257 (407)
++++++ ++|+||||.+++ +++|+++|++||+++|+|++|..+... . + +.. .+..+++.|+||.+|+
T Consensus 165 ~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~~-~--~---~~~----~~~d~~~~s~~K~~g~ 230 (406)
T 1kmj_A 165 TRLLAI-THVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHHP-V--D---VQA----LDCDFYVFSGHKLYGP 230 (406)
T ss_dssp EEEEEE-ESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC-C--C---HHH----HTCSEEEEEGGGTTSC
T ss_pred CeEEEE-eCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCCC-C--c---ccc----cCCCEEEEEchhccCC
Confidence 566655 899999999998 888888999999999999999754321 1 1 111 1457889999999987
Q ss_pred cCCCcceeEEeecChhhHHHHHHHHhhhhh---------------------cccCCCChhHHHHHH-HHhcChhhHHhHH
Q 015435 258 YGERVGALSIVCKTEDVASRVESQLKLVIR---------------------PMYSSPPIHGASIVA-TILKDSTMYKEWT 315 (407)
Q Consensus 258 ~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~-~~l~~~~~~~~~~ 315 (407)
+| +||+ +++ ++ +.+.+..... ....+++.+.+.++. .+++... .
T Consensus 231 ~G--~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-----~ 296 (406)
T 1kmj_A 231 TG--IGIL--YVK-EA----LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVS-----A 296 (406)
T ss_dssp TT--CEEE--EEC-HH----HHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH-----H
T ss_pred CC--cEEE--EEe-HH----HHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHH-----H
Confidence 77 7999 565 43 4444432221 011234455555444 3333211 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC--CceeEEec--CCCHHHHHHhHhhccEEEcCC------------
Q 015435 316 LELKAMADRIISMRQQLFDALSARGTPGDWSHIIK--QIGMFTFT--GLNSEQVAFMTKEYHIYMTSD------------ 379 (407)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~l~~~gi~~~~g------------ 379 (407)
..+++.+++++++++++.+.|++.+. +.+..+ .++++.|. +.+.+.+.+.|.++||.+.+|
T Consensus 297 ~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g 373 (406)
T 1kmj_A 297 LGLNNIAEYEQNLMHYALSQLESVPD---LTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYN 373 (406)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTTSTT---EEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCC---eEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEeccccchHHHHhcC
Confidence 23567788899999999999988732 666666 67777764 345666667777789998753
Q ss_pred --C--eEEecC-CCCCChhHHHHHHHHHHHhhC
Q 015435 380 --G--RISMAG-LSSKTVPHLTDAIHAAVTRMG 407 (407)
Q Consensus 380 --g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~ 407 (407)
+ ||+++. .+++++++++++|+++++.++
T Consensus 374 ~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l~ 406 (406)
T 1kmj_A 374 VPAMCRASLAMYNTHEEVDRLVTGLQRIHRLLG 406 (406)
T ss_dssp CSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeecCCCHHHHHHHHHHHHHHHHhhC
Confidence 3 999875 377999999999999988764
No 86
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.97 E-value=4.2e-31 Score=254.34 Aligned_cols=342 Identities=13% Similarity=0.126 Sum_probs=228.6
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccc-cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSR-VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
.+..++||+.|.+..+.| +.++.+.+++.+.+. .... ...|.+..+..++++++++++.+ . .+++|++ |+
T Consensus 39 ~g~~~id~~~~~~~~~lg-~~~~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~l~~~la~~~~~----~-~~~~v~~--~~ 109 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTG-HLHPKVVAAVEAQLK-KLSHTCFQVLAYEPYLELCEIMNQKVPG----D-FAKKTLL--VT 109 (426)
T ss_dssp TCCEEEESSHHHHTCTTC-BTCHHHHHHHHHHTT-TCSCCCTTTEECHHHHHHHHHHHHHSSC----S-SCEEEEE--ES
T ss_pred CCCEEEEcccChhhcccC-CCCHHHHHHHHHHHH-hCCCccccccCCHHHHHHHHHHHHhCCc----c-cccEEEE--eC
Confidence 467899999887433455 445566666666664 2111 12466778899999999999832 1 2378999 99
Q ss_pred CcccHHHHHHHHHHh-hcCCCeEEecCCCCCChHH-HHhhcCce-------------eeEEEeecC---CCCCcChhhHH
Q 015435 108 SGTGSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPK-VFTLAGLS-------------VKTYRYYDP---ATRGLNFQGLL 169 (407)
Q Consensus 108 g~t~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~-~~~~~G~~-------------~~~v~~~~~---~~~~~d~~~l~ 169 (407)
|+++++.+++++... ..+| +|++++|+|+++.. .+...|.+ ++.+++..+ .++.+|+++++
T Consensus 110 g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~ 188 (426)
T 1sff_A 110 TGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIH 188 (426)
T ss_dssp SHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHH
Confidence 999999999653323 3455 89999999987654 55555543 666666311 12347899999
Q ss_pred HHHHcC---CCCcEEEEecCCCCCCC-CCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435 170 EDLRAA---PSGAIVLLHACAHNPTG-VDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245 (407)
Q Consensus 170 ~~i~~~---~~~~~v~i~~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (407)
+.+.+. ++++++++.++++| || .+++.+++++|+++|++||++||+||+|.++.+.+. ...+ +..+..
T Consensus 189 ~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~----~~~~~~ 260 (426)
T 1sff_A 189 RIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT---LFAM----EQMGVA 260 (426)
T ss_dssp HHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG----GGTTSC
T ss_pred HHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc---hhhh----hhcCCC
Confidence 988731 23456666567788 99 789999999999999999999999999998876532 1111 111112
Q ss_pred EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI 325 (407)
Q Consensus 246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 325 (407)
+.+.||||.++. |+|+||+ +++ +.+.+.+.......+.+++.+++.++.++++... + +...+++
T Consensus 261 ~di~s~sK~~~~-GlriG~~--~~~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~------~--~~~~~~~ 324 (426)
T 1sff_A 261 PDLTTFAKSIAG-GFPLAGV--TGR-----AEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE------Q--ENLLQKA 324 (426)
T ss_dssp CSEEEECGGGGT-SSCCEEE--EEE-----HHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH------H--TTHHHHH
T ss_pred CCEEEEcccccC-CCceEEE--EEc-----HHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH------h--cCHHHHH
Confidence 234499999996 9999999 576 4455545433233445678888888887765321 1 1344556
Q ss_pred HHHHHHHHHHHHhcC--CCCCcccccCCceeEEecCCC------------HHHHHHhHhhccEEEcCCC------eEEec
Q 015435 326 ISMRQQLFDALSARG--TPGDWSHIIKQIGMFTFTGLN------------SEQVAFMTKEYHIYMTSDG------RISMA 385 (407)
Q Consensus 326 ~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~~~~gg------Ris~~ 385 (407)
+++++++.+.+++++ .+. +....+. |+|.|+.+. .+.+...|.++||.+.+++ ||+++
T Consensus 325 ~~~~~~l~~~l~~~~~~~~~-~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi~~~ 402 (426)
T 1sff_A 325 NDLGQKLKDGLLAIAEKHPE-IGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVP 402 (426)
T ss_dssp HHHHHHHHHHHHHHHHTCTT-EEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhCCC-eEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEEECC
Confidence 666777777666542 110 2233444 456666541 2334444455799998863 88876
Q ss_pred -CCCCCChhHHHHHHHHHHHhh
Q 015435 386 -GLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 386 -~~~~e~i~~~~~~l~~~l~~~ 406 (407)
..+++++++++++|+++++++
T Consensus 403 ~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 403 LTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHH
Confidence 358899999999999998764
No 87
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.97 E-value=4.7e-31 Score=252.36 Aligned_cols=332 Identities=14% Similarity=0.120 Sum_probs=224.4
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
..++.++|++.|.+.++.| ..++.+.+++.+++. .......+.+.....++++.+++++ +. +++++ |+
T Consensus 36 ~~g~~~lD~~~~~~~~~lg-~~~p~v~~a~~~~~~-~~~~~~~~~~~~~~~~l~~~la~~~-~~-------~~v~~--~~ 103 (406)
T 4adb_A 36 QQGKEYIDFAGGIAVNALG-HAHPELREALNEQAS-KFWHTGNGYTNEPVLRLAKKLIDAT-FA-------DRVFF--CN 103 (406)
T ss_dssp TTCCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHT-TCSCCCTTSCCHHHHHHHHHHHHHS-SC-------SEEEE--ES
T ss_pred CCCCEEEECCCchhhcccC-CCCHHHHHHHHHHHH-hcccccCCcCCHHHHHHHHHHHhhC-CC-------CeEEE--eC
Confidence 4568899999996544566 456667777767665 2111112223344677777788776 42 68999 99
Q ss_pred CcccHHHHHHHHHHhh-----cCC-CeEEecCCCCCChHHHHhhcCc-------------eeeEEEeecCCCCCcChhhH
Q 015435 108 SGTGSLRVGAEFLARH-----YHQ-LTIYIPQPTWGNHPKVFTLAGL-------------SVKTYRYYDPATRGLNFQGL 168 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~-----~~g-d~Vi~~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~d~~~l 168 (407)
||++++.++++.+... .+| |+|++++|+|+.+.......+. ++..+|. .|++++
T Consensus 104 gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l 176 (406)
T 4adb_A 104 SGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSA 176 (406)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHH
Confidence 9999999996544221 045 9999999999998665554443 2223322 378889
Q ss_pred HHHHHcCCCCcEEEEecCCCCCCCCCC--CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435 169 LEDLRAAPSGAIVLLHACAHNPTGVDP--TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246 (407)
Q Consensus 169 ~~~i~~~~~~~~v~i~~~p~NPtG~~~--~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i 246 (407)
++.+. ++++++++ + |+||||.++ +.+++++|+++|++||++||+||+|.++.+.+. ......+ ....+++
T Consensus 177 ~~~l~--~~~~~v~~-~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~-~~~~d~~ 248 (406)
T 4adb_A 177 SALID--DSTCAVIV-E-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE---LYAYMHY-GVTPDLL 248 (406)
T ss_dssp HTTCS--TTEEEEEE-C-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHHHHH-TCCCSEE
T ss_pred HHHhc--CCeEEEEE-e-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch---hHHHHhc-CCCCCEE
Confidence 88876 45566555 5 899999988 999999999999999999999999998876542 2222222 2223344
Q ss_pred EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII 326 (407)
Q Consensus 247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 326 (407)
||||.++ +|+|+||+ +++ +.+.+.+.......+.+++.+++.++..+++... .++.+++++
T Consensus 249 ---t~sK~~~-~G~r~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------~~~~~~~~~ 309 (406)
T 4adb_A 249 ---TTAKALG-GGFPVGAL--LAT-----EECARVMTVGTHGTTYGGNPLASAVAGKVLELIN--------TPEMLNGVK 309 (406)
T ss_dssp ---EECGGGG-TTSCCEEE--EEC-----HHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHS--------SHHHHHHHH
T ss_pred ---Eechhhc-CCCCeEEE--EEc-----HHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH--------hcCHHHHHH
Confidence 6799999 99999998 566 5566666555445556788888888887776332 145667777
Q ss_pred HHHHHHHHHHHhcCCC-CCcccccCCceeEEecCC------CHHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhH
Q 015435 327 SMRQQLFDALSARGTP-GDWSHIIKQIGMFTFTGL------NSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPH 394 (407)
Q Consensus 327 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~ 394 (407)
++++++.+.|++.+.. ..+..... .+.+.++.+ +.+.+.+.|.++||.+.+++ ||+++. .+++++++
T Consensus 310 ~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~ 388 (406)
T 4adb_A 310 QRHDWFVERLNTINHRYGLFSEVRG-LGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTT 388 (406)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEE-ETTEEEEEECTTTTTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEE-EEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHH
Confidence 7888888877765310 00111222 233444322 34555555555799999875 885443 47899999
Q ss_pred HHHHHHHHHHhh
Q 015435 395 LTDAIHAAVTRM 406 (407)
Q Consensus 395 ~~~~l~~~l~~~ 406 (407)
++++|+++++++
T Consensus 389 ~~~~l~~~l~~~ 400 (406)
T 4adb_A 389 GLDRFAAACEHF 400 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 88
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.97 E-value=4.5e-30 Score=243.71 Aligned_cols=325 Identities=14% Similarity=0.110 Sum_probs=221.6
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccc---cccC--CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSR---VKEY--LPIVGLVDFNKLSAKLILGADSPAIKDNRVTT 103 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~y--~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~ 103 (407)
++..+|||+.|.+ .+.+.++.+.+++.+.+. .... ...| ....+..++++.+++++ +. ++.++
T Consensus 37 ~g~~~id~~~~~~---~~~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~-------~~~i~ 104 (384)
T 1bs0_A 37 DDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAE-QFGIGSGGSGHVSGYSVVHQALEEELAEWL-GY-------SRALL 104 (384)
T ss_dssp TTEEEEECSCCCT---TSGGGCHHHHHHHHHHHH-HHCSCCCSBTTTTCCCHHHHHHHHHHHHHH-TC-------SEEEE
T ss_pred CCceEEEeeccCc---cCCCCCHHHHHHHHHHHH-HhCCCCCCcCcccCChHHHHHHHHHHHHHh-CC-------CcEEE
Confidence 4568999998862 343445566666666664 1111 1123 44567899999999998 53 24555
Q ss_pred eecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEE
Q 015435 104 VQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLL 183 (407)
Q Consensus 104 ~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i 183 (407)
+++|++++..++ ...+.+||.|+++.|+|..+...++..|.+++.+|. .|++++++.+.+......+++
T Consensus 105 --~~sGt~a~~~~~--~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~ 173 (384)
T 1bs0_A 105 --FISGFAANQAVI--AAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVV 173 (384)
T ss_dssp --ESCHHHHHHHHH--HHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEE
T ss_pred --eCCcHHHHHHHH--HHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEE
Confidence 555589999885 334679999999999999999999999999988864 478999999984322234455
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcc
Q 015435 184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVG 263 (407)
Q Consensus 184 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 263 (407)
+++|+||||.+++ +++|+++|++||+++|+||+|..+.++.. .... ...+ . ....++++|+||.++++| |
T Consensus 174 ~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~-~~~~-~-~~~di~~~s~sK~~~~~G---G 243 (384)
T 1bs0_A 174 TEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQ-GRGS-CWLQ-K-VKPELLVVTFGKGFGVSG---A 243 (384)
T ss_dssp EESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGG-GCCH-HHHT-T-CCCSEEEEESSSTTSSCC---E
T ss_pred EeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCC-CCch-HHhc-C-CCCcEEEeeccchhhccC---c
Confidence 5999999999998 77888889999999999999977654210 0111 1112 1 123489999999999766 8
Q ss_pred eeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015435 264 ALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTP 342 (407)
Q Consensus 264 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~ 342 (407)
|+ +++ +++.+.+........ ...+++.+.+.++..+++... + +.++.+++++++++++.+.|++.+
T Consensus 244 ~~--~~~-~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~al~~~~------~~~~~~~~~~~~~~~~~l~~~L~~~g-- 310 (384)
T 1bs0_A 244 AV--LCS-STVADYLLQFARHLI--YSTSMPPAQAQALRASLAVIR------SDEGDARREKLAALITRFRAGVQDLP-- 310 (384)
T ss_dssp EE--EEC-HHHHHHHHHHCHHHH--SSBCCCHHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHHHHHHTTSS--
T ss_pred EE--EeC-HHHHHHHHHhchhhh--cCCCCCHHHHHHHHHHHHHHh------ccccHHHHHHHHHHHHHHHHHHHhcC--
Confidence 98 464 554444333111111 122577777777776665321 1 456778889999999999999886
Q ss_pred CCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCC---------C--eEEecC-CCCCChhHHHHHHHHH
Q 015435 343 GDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSD---------G--RISMAG-LSSKTVPHLTDAIHAA 402 (407)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~g---------g--Ris~~~-~~~e~i~~~~~~l~~~ 402 (407)
+.+..+ .+.+.|+.+ +.+.+.+.|.++||.+.++ + ||+++. .+++++++++++|+++
T Consensus 311 --~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 311 --FTLADS-CSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp --CEECSC-CSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred --CcccCC-CCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 555543 444555544 2334444455579999864 2 888874 3789999999998764
No 89
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.97 E-value=7.3e-30 Score=242.98 Aligned_cols=330 Identities=10% Similarity=0.065 Sum_probs=228.5
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
..+++++|++.+.+..+.| ..++.+.+++.+.+. .......+.+.....++++.+++++ + .+++++ |+
T Consensus 33 ~~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~-~~~~~~~~~~~~~~~~l~~~la~~~-g-------~~~v~~--~~ 100 (392)
T 3ruy_A 33 PEGNRYMDLLSAYSAVNQG-HRHPKIINALIDQAN-RVTLTSRAFHSDQLGPWYEKVAKLT-N-------KEMVLP--MN 100 (392)
T ss_dssp TTCCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHT-TCSCCCTTSEETTHHHHHHHHHHHH-T-------CSEEEE--ES
T ss_pred CCCCEEEEcCCChhhhccC-CCCHHHHHHHHHHHH-hccccccccCCHHHHHHHHHHHHhc-C-------CCEEEE--eC
Confidence 3568899999986543444 345667777766664 2111111223455778888898887 4 279999 99
Q ss_pred CcccHHHHHHHHHHhh--------cCCCeEEecCCCCCChHHHHhhcCce-------------eeEEEeecCCCCCcChh
Q 015435 108 SGTGSLRVGAEFLARH--------YHQLTIYIPQPTWGNHPKVFTLAGLS-------------VKTYRYYDPATRGLNFQ 166 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~--------~~gd~Vi~~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~~d~~ 166 (407)
||++++.++++++... ..+|.|+++.|+|+++.......+.. +..++. .|++
T Consensus 101 ~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~ 173 (392)
T 3ruy_A 101 TGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLE 173 (392)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHH
T ss_pred cHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHH
Confidence 9999999997654333 23679999999998776655543322 323322 2799
Q ss_pred hHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHH-HHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435 167 GLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQ-WEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245 (407)
Q Consensus 167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (407)
++++++. ++++++++ ++|+||||.+++.++ +++|+++|++||+++|+||+|.++.+.+.. ..... .....++
T Consensus 174 ~l~~~l~--~~~~~v~~-~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~---~~~~~-~~~~~d~ 246 (392)
T 3ruy_A 174 ALKAAIT--PNTAAFIL-EPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKV---FACDW-DNVTPDM 246 (392)
T ss_dssp HHHHHCC--TTEEEEEE-CSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSS---SGGGG-GTCCCSE
T ss_pred HHHHHhc--cCeEEEEE-eCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccc---hhhhc-cCCCCCE
Confidence 9999987 55677666 789999999996555 999999999999999999999888765421 11111 1112233
Q ss_pred EEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435 246 LVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR 324 (407)
Q Consensus 246 i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 324 (407)
+ +|||.++ +| +|+||+ +++ +.+.+.+........++++.+++.++..+++... . ++.+++
T Consensus 247 ~---~~SK~l~-gG~~~~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~--~~~~~~ 307 (392)
T 3ruy_A 247 Y---ILGKALG-GGVFPISCA--AAN-----RDILGVFEPGSHGSTFGGNPLACAVSIAALEVLE------E--EKLTER 307 (392)
T ss_dssp E---EECGGGG-TTTSCCEEE--EEC-----HHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHH------H--TTHHHH
T ss_pred E---EEchhhh-CChhhhEEE--EEC-----HHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH------h--hhHHHH
Confidence 3 6789876 46 999999 566 4555556555555556788888988888876431 1 567788
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccCCceeEEec-CCCHHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHH
Q 015435 325 IISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT-GLNSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDA 398 (407)
Q Consensus 325 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~ 398 (407)
++++++++.+.|++.+.+ .+....+.++++.|. +-+.+.+.+.|.++||.+.+++ ||+++. .+++++++++++
T Consensus 308 ~~~~~~~l~~~L~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~ 386 (392)
T 3ruy_A 308 SLQLGEKLVGQLKEIDNP-MITEVRGKGLFIGIELNEPARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQK 386 (392)
T ss_dssp HHHHHHHHHHHHTTCCCT-TEEEEEEETTEEEEEESSCSHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-CceEEEeeeeEEEEEEcchHHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 899999999999887532 134445566666654 2144445555557899999975 887443 478999999999
Q ss_pred HHHHH
Q 015435 399 IHAAV 403 (407)
Q Consensus 399 l~~~l 403 (407)
|++++
T Consensus 387 l~~~l 391 (392)
T 3ruy_A 387 IKAVL 391 (392)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99876
No 90
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.97 E-value=8.5e-31 Score=249.86 Aligned_cols=329 Identities=13% Similarity=0.115 Sum_probs=220.8
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc-ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV-KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC 106 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t 106 (407)
..+..++||+.|.+.++.| +.++.+.+++.+.+. ..... ..| +.....++++.+++++ + .+++++ |
T Consensus 37 ~~g~~~ld~~~~~~~~~lg-~~~~~v~~a~~~~~~-~~~~~~~~~-~~~~~~~l~~~la~~~-g-------~~~v~~--~ 103 (397)
T 2ord_A 37 EKGNAYLDFTSGIAVNVLG-HSHPRLVEAIKDQAE-KLIHCSNLF-WNRPQMELAELLSKNT-F-------GGKVFF--A 103 (397)
T ss_dssp TTCCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHH-HCSCCCTTS-EEHHHHHHHHHHHHTT-T-------SCEEEE--E
T ss_pred CCCCEEEECCccccccccC-CCCHHHHHHHHHHHH-hcccCcccc-CCHHHHHHHHHHHHhc-C-------CCeEEE--e
Confidence 3467899999885433455 445667777666664 11111 113 2334566777777766 3 278999 9
Q ss_pred CCcccHHHHHHHHHHhhc----C-CCeEEecCCCCCChHH-HHhhcCce------------eeEEEeecCCCCCcChhhH
Q 015435 107 LSGTGSLRVGAEFLARHY----H-QLTIYIPQPTWGNHPK-VFTLAGLS------------VKTYRYYDPATRGLNFQGL 168 (407)
Q Consensus 107 ~g~t~a~~~~~~~~~~~~----~-gd~Vi~~~p~y~~~~~-~~~~~G~~------------~~~v~~~~~~~~~~d~~~l 168 (407)
+||++++.++++.+.... + ++.|++++|+|++... .+...|.+ ++.++. .|++++
T Consensus 104 ~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l 176 (397)
T 2ord_A 104 NTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDL 176 (397)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHH
Confidence 999999999865442221 4 4789999999976544 67777765 555543 288999
Q ss_pred HHHHHcCCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEE
Q 015435 169 LEDLRAAPSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLV 247 (407)
Q Consensus 169 ~~~i~~~~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 247 (407)
++.+. ++++++++ ++|+||||. +++.+++++|+++|++||++||+||+|.++.+.+. ..++..+.. ..+++
T Consensus 177 ~~~l~--~~~~~v~~-~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~-~~d~~- 248 (397)
T 2ord_A 177 RRKMS--EDVCAVFL-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK---LFAYQKYGV-VPDVL- 248 (397)
T ss_dssp HHHCC--TTEEEEEE-CSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSHHHHHTC-CCSEE-
T ss_pred HHHhh--cCeEEEEE-ecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc---chhhhhhCC-CCCee-
Confidence 99886 45667666 789999999 99999999999999999999999999988776532 223322221 12322
Q ss_pred EEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH
Q 015435 248 AQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIIS 327 (407)
Q Consensus 248 ~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 327 (407)
||||.++ +|+|+||+ +++++ +. .+.......+++++.+++.++..+++... + ++.++++++
T Consensus 249 --s~sK~~~-~G~r~G~~--~~~~~-----~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~--~~~~~~~~~ 309 (397)
T 2ord_A 249 --TTAKGLG-GGVPIGAV--IVNER-----AN-VLEPGDHGTTFGGNPLACRAGVTVIKELT------K--EGFLEEVEE 309 (397)
T ss_dssp --EECGGGG-TTSCCEEE--EECST-----TC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHT------S--TTHHHHHHH
T ss_pred --eeccccC-CCcCeEEE--EEchH-----hc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHH------h--CCHHHHHHH
Confidence 7899999 89999999 56632 22 33322223344678888888887775332 1 345677788
Q ss_pred HHHHHHHHHHhc--CCCCCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCCC----eEEec-CCCCCChhHHH
Q 015435 328 MRQQLFDALSAR--GTPGDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSDG----RISMA-GLSSKTVPHLT 396 (407)
Q Consensus 328 ~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~gg----Ris~~-~~~~e~i~~~~ 396 (407)
+++++.+.|++. +.+. +....+.+. |.++.+ +.+.+.+.|.++||.+.+++ ||+++ ..+++++++++
T Consensus 310 ~~~~l~~~L~~~~~~~~~-~~~~~~~g~-~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~ 387 (397)
T 2ord_A 310 KGNYLMKKLQEMKEEYDV-VADVRGMGL-MIGIQFREEVSNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAV 387 (397)
T ss_dssp HHHHHHHHHHHHHHHCTT-EEEEEEETT-EEEEEECTTSCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-eEEEEEEeE-EEEEEECChHHHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHH
Confidence 888888888765 2211 112234444 444432 34555555555899999874 88854 24889999999
Q ss_pred HHHHHHHHh
Q 015435 397 DAIHAAVTR 405 (407)
Q Consensus 397 ~~l~~~l~~ 405 (407)
++|++++++
T Consensus 388 ~~l~~~l~~ 396 (397)
T 2ord_A 388 ETLKKVLQG 396 (397)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999998864
No 91
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.1e-29 Score=241.14 Aligned_cols=294 Identities=13% Similarity=0.118 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC--hHHHHhhcCceeeEEEe
Q 015435 78 VDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN--HPKVFTLAGLSVKTYRY 155 (407)
Q Consensus 78 ~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~v~~ 155 (407)
.++++++++++....+.. +++++++ |+|+++++.+++. ..+.+||+|++++|+|.+ +...++..|.+++.++.
T Consensus 52 ~~~~~~~~~~la~~~g~~-~~~~v~~--~~g~t~a~~~~~~--~l~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 126 (386)
T 2dr1_A 52 RKVHMDTVERLREFLEVE-KGEVLLV--PSSGTGIMEASIR--NGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEY 126 (386)
T ss_dssp HHHHHHHHHHHHHHHTCS-SSEEEEE--SSCHHHHHHHHHH--HHSCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCC-CCcEEEE--eCChHHHHHHHHH--HhhcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEec
Confidence 445555555442222221 2467999 9999999999953 337799999999999988 88888999999999998
Q ss_pred ecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHH
Q 015435 156 YDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSV 235 (407)
Q Consensus 156 ~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~ 235 (407)
+ .++.+|++++++.+.+.++++++++ ++|+||||.+.+ +++|+++|++||+++|+|++|..+... . +
T Consensus 127 ~--~~~~~d~~~l~~~l~~~~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-~--~---- 193 (386)
T 2dr1_A 127 E--PGKAVKPEDLDDALRKNPDVEAVTI-TYNETSTGVLNP---LPELAKVAKEHDKLVFVDAVSAMGGAD-I--K---- 193 (386)
T ss_dssp C--TTCCCCHHHHHHHHHHCTTCCEEEE-ESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBC-C--C----
T ss_pred C--CCCCCCHHHHHHHHhcCCCCcEEEE-EeecCCcchhCC---HHHHHHHHHHcCCeEEEEccccccCcc-c--c----
Confidence 3 3567999999999964356777777 799999999875 788889999999999999999866542 1 1
Q ss_pred HHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHH------------HHhhh--hhcccCCCChhHHHHH
Q 015435 236 RMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVES------------QLKLV--IRPMYSSPPIHGASIV 301 (407)
Q Consensus 236 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~ 301 (407)
+ ...+..++++|+||.++.++ ++||+ +++ +++.+.+.. .+... ......+++...+.++
T Consensus 194 --~-~~~~~di~~~s~sK~~~~~~-g~G~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 266 (386)
T 2dr1_A 194 --F-DKWGLDVVFSSSQKAFGVPP-GLAIG--AFS-ERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGI 266 (386)
T ss_dssp --T-TTTTCSEEEEETTSTTCCCS-SCEEE--EEC-HHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHH
T ss_pred --c-cccCCcEEEEeccccccCCC-ceEEE--EEC-HHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHH
Confidence 1 11245799999999998652 48998 565 444433310 01111 1233446777788877
Q ss_pred HHHhcChhhHHhHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC---ceeEEecC----CCHHHHHHhHhhc
Q 015435 302 ATILKDSTMYKEWTL--ELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ---IGMFTFTG----LNSEQVAFMTKEY 372 (407)
Q Consensus 302 ~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~l~~~ 372 (407)
..+++.. .+ .+++.+++++++++++.+.|++.+ +.+..+. .+.+.|+. .+.+.+.+.|.++
T Consensus 267 ~~~l~~~------~~~g~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 336 (386)
T 2dr1_A 267 NVALRII------EKMGGKEKWLEMYEKRAKMVREGVREIG----LDILAEPGHESPTITAVLTPPGIKGDEVYEAMRKR 336 (386)
T ss_dssp HHHHHHH------HHTTCHHHHHHHHHHHHHHHHHHHHHTT----CCBSSCTTCBCSSEEEEECCTTCCHHHHHHHHHHT
T ss_pred HHHHHHH------HHhcCHHHHHHHHHHHHHHHHHHHHHcC----CeeCcCccccCCceEEEEcCCCCCHHHHHHHHHHC
Confidence 7776532 12 266788899999999999999876 5555443 24455443 3555555444446
Q ss_pred cEEEcCC------C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 373 HIYMTSD------G--RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 373 gi~~~~g------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
||.+.++ + ||+++. .+++++++++++|+++++++
T Consensus 337 gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 337 GFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINEL 379 (386)
T ss_dssp TEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999885 2 999884 58899999999999998764
No 92
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.97 E-value=7.3e-31 Score=247.87 Aligned_cols=324 Identities=10% Similarity=0.065 Sum_probs=222.3
Q ss_pred CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc-------cccccCCCCCCcHHHHHH-HHHHHhCCCCCCCCCCce
Q 015435 30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ-------SRVKEYLPIVGLVDFNKL-SAKLILGADSPAIKDNRV 101 (407)
Q Consensus 30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~y~~~~g~~~l~~~-~a~~~~~~~~~~~~~~~i 101 (407)
.++.++|..|.+ .+ +.++.+.+++.+.+. .. .....|.+..+..++++. +++++ +. +++
T Consensus 6 ~~~~i~ld~~~~---~~-~~~~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~-~~-------~~v 72 (371)
T 2e7j_A 6 TKDFINIDPLQT---GG-KLTEEARQALLEWGD-GYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL-GC-------DVA 72 (371)
T ss_dssp --CCEECCHHHH---TC-CCCHHHHHHHHHC---------------------CCHHHHHHTHHHHHT-TS-------SEE
T ss_pred CCCcEEeccccc---CC-CCCHHHHHHHHHHHh-hcccCCccccccchhhHHHHHHHHHHHHHHHHc-CC-------CEE
Confidence 356777877653 34 556666666665554 11 012235567889999999 99988 43 278
Q ss_pred EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEE--eecCCCCCcChhhHHHHHHcC---C
Q 015435 102 TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYR--YYDPATRGLNFQGLLEDLRAA---P 176 (407)
Q Consensus 102 ~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~--~~~~~~~~~d~~~l~~~i~~~---~ 176 (407)
++ |+|+|+++.+++..+ +.+||+|++++|+|.++...++..|.+++.++ . +.++.+|++++++.+.+. +
T Consensus 73 ~~--~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l~~~~~~~ 146 (371)
T 2e7j_A 73 RV--TNGAREAKFAVMHSL--AKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTD--YPDYAITPENFAQTIEETKKRG 146 (371)
T ss_dssp EE--ESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCC--TTTCCCCHHHHHHHHHHHTTTS
T ss_pred EE--eCChHHHHHHHHHHH--hCCCCEEEEccCcchHHHHHHHHcCCeEEEeeccc--CCCCCcCHHHHHHHHHhhcccC
Confidence 88 999999999995443 77999999999999999999999999999998 6 335789999999998742 3
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccc
Q 015435 177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMG 256 (407)
Q Consensus 177 ~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 256 (407)
+++++++ ++|+||||.+++ +++|+++|++||+++|+|++|..+... . + +..+ +..++++|+||.++
T Consensus 147 ~~~~v~~-~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~-~--~---~~~~----~~di~~~s~sK~~~ 212 (371)
T 2e7j_A 147 EVVLALI-TYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP-V--S---LKEI----GADFIVGSGHKSMA 212 (371)
T ss_dssp CEEEEEE-ESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC-C--C---HHHH----TCSEEEEEHHHHSS
T ss_pred CeEEEEE-ECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCCC-C--C---hhhc----CCCEEEecCCcCCC
Confidence 4555554 999999999997 588888899999999999999876542 1 1 2111 23489999999988
Q ss_pred ccCCCcceeEEeecChhhHHHHHHH-Hhhhhh--cc-----cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH--H
Q 015435 257 LYGERVGALSIVCKTEDVASRVESQ-LKLVIR--PM-----YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI--I 326 (407)
Q Consensus 257 ~~G~r~G~~~~v~~~~~~~~~~~~~-~~~~~~--~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~ 326 (407)
.+ .|+||+ +++ ++ +.+. +..... .. ..+++...+.++...++... . +.++++ +
T Consensus 213 ~~-~~~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~---~~~~~~~~~ 275 (371)
T 2e7j_A 213 AS-GPIGVM--GMK-EE----WAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVR------E---RIKRWDEEV 275 (371)
T ss_dssp CC-SSCEEE--EEC-TT----TTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHH------H---HGGGHHHHH
T ss_pred CC-CCcEEE--EEe-ch----hhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHH------H---HHHHHHHHH
Confidence 54 599999 566 33 3332 322221 11 22445554555544443221 1 556667 8
Q ss_pred HHHHHHHHHHHhcCCCCCcccccCC--ceeEEecCC-CHHHHHHhHhhccEEEcC--------C---C--e-EEecC--C
Q 015435 327 SMRQQLFDALSARGTPGDWSHIIKQ--IGMFTFTGL-NSEQVAFMTKEYHIYMTS--------D---G--R-ISMAG--L 387 (407)
Q Consensus 327 ~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~l~~~gi~~~~--------g---g--R-is~~~--~ 387 (407)
++++++.+.|++.+ +.+..+. .+.+.|+.+ +.+.+.+.|.++||.+.| | + | |+++. .
T Consensus 276 ~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~ 351 (371)
T 2e7j_A 276 EKARRFAAEMEKLG----IKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGL 351 (371)
T ss_dssp HHHHHHHHHHHHTT----CEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTC
T ss_pred HHHHHHHHHHHHcC----cEEecCCCccCceEEEECCCHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCC
Confidence 88899999998875 5655442 234566655 344455555578998865 2 2 9 99985 4
Q ss_pred CCCChhHHHHHHHHHHHhhC
Q 015435 388 SSKTVPHLTDAIHAAVTRMG 407 (407)
Q Consensus 388 ~~e~i~~~~~~l~~~l~~~~ 407 (407)
+++++++++++|++++++++
T Consensus 352 ~~~~i~~~~~~l~~~~~~~~ 371 (371)
T 2e7j_A 352 SDEEVDYVLNAFKEIIEKYS 371 (371)
T ss_dssp CHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHhcC
Confidence 88999999999999998764
No 93
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.97 E-value=3.3e-29 Score=239.06 Aligned_cols=311 Identities=16% Similarity=0.103 Sum_probs=218.3
Q ss_pred CeeeeeeeeeecCCCccccc---hhHHHHHHHHhccccccccCCCCCCcH---HHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435 32 VKLNLGVGAYRTEEGKPLVL---NVVRKAEQLLVNDQSRVKEYLPIVGLV---DFNKLSAKLILGADSPAIKDNRVTTVQ 105 (407)
Q Consensus 32 ~~i~l~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~y~~~~g~~---~l~~~~a~~~~~~~~~~~~~~~i~~~~ 105 (407)
+..++++|.| +. +.+. +.+.+..+.+. +....+.|++ .|.+ ++++++++++ +. +++++
T Consensus 19 ~~~~~~~~~p---~~-~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~-~~~~~~~~l~~~ia~~~-g~-------~~~i~-- 82 (404)
T 1e5e_A 19 KDQFGAAIPP---IY-QTSTFVFDNCQQGGNRFA-GQESGYIYTR-LGNPTVSNLEGKIAFLE-KT-------EACVA-- 82 (404)
T ss_dssp CCTTCCSSCC---CC-CCSBCCCSSHHHHHHHHT-TSSCSCCBTT-TCCHHHHHHHHHHHHHH-TC-------SEEEE--
T ss_pred CCCCCCcCCC---Cc-CCCccccCCHHHHHHhhc-CCcCCccccC-CcChHHHHHHHHHHHHh-CC-------CcEEE--
Confidence 3456788876 44 3333 33334443333 2223456866 5665 8999999988 43 46777
Q ss_pred cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH----HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEE
Q 015435 106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK----VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIV 181 (407)
Q Consensus 106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v 181 (407)
++||++++.+++ ...+.+||+|+++.|.|.++.. .++..|.+++.++.. |++++++.+. ++++++
T Consensus 83 ~~~g~~ai~~~~--~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~--~~t~~v 151 (404)
T 1e5e_A 83 TSSGMGAIAATV--LTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHMK--PNTKIV 151 (404)
T ss_dssp ESSHHHHHHHHH--HHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHCC--TTEEEE
T ss_pred eCChHHHHHHHH--HHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------CHHHHHHhcC--CCCcEE
Confidence 888899999984 4447899999999999999888 678899999998762 7889999887 556777
Q ss_pred EEecCCCCCCCCCCCHHHHHHHHHHHHH-cCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCC
Q 015435 182 LLHACAHNPTGVDPTLEQWEQIRQLMRS-KGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGE 260 (407)
Q Consensus 182 ~i~~~p~NPtG~~~~~~~l~~i~~~~~~-~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 260 (407)
++ ++|+||||.+++ +++|+++|++ +|+++|+|++|..+.+.. . + . .+..+++.|+||.++++|+
T Consensus 152 ~l-~~p~NptG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~~---~---~----~-~~~di~~~S~sK~~~~~g~ 216 (404)
T 1e5e_A 152 YF-ETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN---P---V----D-FGVDVVVHSATKYINGHTD 216 (404)
T ss_dssp EE-ESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC---G---G----G-GTCSEEEEETTTTTTCSSC
T ss_pred EE-ECCCCCCCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhCC---c---c----c-cCCEEEEEcCccccCCCCC
Confidence 66 899999999985 8889999999 999999999999887631 1 1 1 2578999999999999999
Q ss_pred Cc-ceeEEeecChhhHHHHHH-HHhhhhhcc-cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015435 261 RV-GALSIVCKTEDVASRVES-QLKLVIRPM-YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALS 337 (407)
Q Consensus 261 r~-G~~~~v~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 337 (407)
|+ ||+ +++ +.+.. .+......+ ..+.+.+.+.++...++... ...++..++.+.+.+.++
T Consensus 217 ri~G~~--~~~-----~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~l~~~l~ 279 (404)
T 1e5e_A 217 VVAGLI--CGK-----ADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLN----------IRMKAESENAMKVAEYLK 279 (404)
T ss_dssp CCCEEE--EEC-----HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHH----------HHHHHHHHHHHHHHHHHH
T ss_pred CeEEEE--EEC-----HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHHH----------HHHHHHHHHHHHHHHHHH
Confidence 98 998 566 33333 455444433 34677788888887776532 223334455556666665
Q ss_pred hcCC------CC-----CcccccCC----ceeEEecCCC--HHHHHHhHhhccEEEcC----------------------
Q 015435 338 ARGT------PG-----DWSHIIKQ----IGMFTFTGLN--SEQVAFMTKEYHIYMTS---------------------- 378 (407)
Q Consensus 338 ~~~~------~~-----~~~~~~~~----~~~~~~~~~~--~~~~~~~l~~~gi~~~~---------------------- 378 (407)
+.+. +. .+.+..++ ++++.| .+. .+.+.+++++.||.+..
T Consensus 280 ~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~ 358 (404)
T 1e5e_A 280 SHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVP 358 (404)
T ss_dssp TCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETTHHHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSC
T ss_pred hCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCCCHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCC
Confidence 5430 00 12333333 888887 443 24567788888874321
Q ss_pred -------C---C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435 379 -------D---G--RISMAGLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 379 -------g---g--Ris~~~~~~e~i~~~~~~l~~~l~~ 405 (407)
| + |||++. |++++++++|+++++.
T Consensus 359 ~~~~~~~g~~~~~iRis~g~---e~~~~li~~l~~al~~ 394 (404)
T 1e5e_A 359 KEEREAAGITDGMIRLSVGI---EDADELIADFKQGLDA 394 (404)
T ss_dssp HHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHHHHHH
Confidence 1 3 888884 8999999999998864
No 94
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.97 E-value=8.5e-30 Score=245.23 Aligned_cols=328 Identities=13% Similarity=0.104 Sum_probs=225.2
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCC----CCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPI----VGLVDFNKLSAKLILGADSPAIKDNRVTTV 104 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~----~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~ 104 (407)
+++++|||+.|.+ .|.+.++.+.+++.+.+.........|... ....++++.+++++ +. ++.++
T Consensus 62 ~g~~~id~~~~~~---lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~-g~-------~~~i~- 129 (427)
T 2w8t_A 62 RGKDTILLGTYNY---MGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFY-GT-------TGAIV- 129 (427)
T ss_dssp TTEEEEECSCCCT---TCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHH-TC-------SEEEE-
T ss_pred CCceEEEEECccc---ccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHh-CC-------CceEE-
Confidence 4567899999963 454456667777766665101112223223 34588999999988 53 35666
Q ss_pred ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC--CCcEEE
Q 015435 105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP--SGAIVL 182 (407)
Q Consensus 105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~--~~~~v~ 182 (407)
+++|++++..++. ..+.+||.|+++.|+|..+...++..|.+++.++. .|++++++.+.+.. ++++++
T Consensus 130 -~~sGs~a~~~al~--~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~ 199 (427)
T 2w8t_A 130 -FSTGYMANLGIIS--TLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVV 199 (427)
T ss_dssp -ESCHHHHHHHHHH--HHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEE
T ss_pred -ecCcHHHHHHHHH--HhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEE
Confidence 7777888888743 34779999999999999999999999999988753 58999999998432 455655
Q ss_pred EecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc
Q 015435 183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV 262 (407)
Q Consensus 183 i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 262 (407)
+ ++++||||.+.+ +++|+++|++||++||+||+|..+.++...... ...+.-..+.++++.||||.+|++|
T Consensus 200 ~-~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~--~~~~~~~~~~di~~~s~sK~~g~~g--- 270 (427)
T 2w8t_A 200 L-EGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGV--YEAQGLEGQIDFVVGTFSKSVGTVG--- 270 (427)
T ss_dssp E-ESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCH--HHHTTCTTCCSEEEEESSSTTCSCC---
T ss_pred E-cCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCch--HhhcCCCcCCcEEEecchhhhccCC---
Confidence 5 899999999887 888888999999999999999987764211111 1111112345899999999998766
Q ss_pred ceeEEeecChhhHHHHHHHHhhhhh-c-ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435 263 GALSIVCKTEDVASRVESQLKLVIR-P-MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG 340 (407)
Q Consensus 263 G~~~~v~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 340 (407)
||+ +++ +++.+. +....+ . .+.+.+...+.++...++.. +..++.+++++++++++.+.|++.+
T Consensus 271 G~v--~~~-~~l~~~----l~~~~~~~~~~~~~~~~~~aa~~~al~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g 336 (427)
T 2w8t_A 271 GFV--VSN-HPKFEA----VRLACRPYIFTASLPPSVVATATTSIRKL-------MTAHEKRERLWSNARALHGGLKAMG 336 (427)
T ss_dssp EEE--EEC-CTTGGG----GGGTCHHHHSSCCCCHHHHHHHHHHHHHH-------TSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEE--EeC-HHHHHH----HHHhcccccccCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 898 454 444333 332211 1 22345666666655565532 1135677889999999999999886
Q ss_pred CCCCcccc-cC-CceeEEecCCC----HHHHHHhHhhccEEEcCC---------C--eEEecC-CCCCChhHHHHHHHHH
Q 015435 341 TPGDWSHI-IK-QIGMFTFTGLN----SEQVAFMTKEYHIYMTSD---------G--RISMAG-LSSKTVPHLTDAIHAA 402 (407)
Q Consensus 341 ~~~~~~~~-~~-~~~~~~~~~~~----~~~~~~~l~~~gi~~~~g---------g--Ris~~~-~~~e~i~~~~~~l~~~ 402 (407)
+.+. .+ .++ +.|+.+. ...+.+.|.++||.+.++ + ||+++. .+++++++++++|+++
T Consensus 337 ----~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~ 411 (427)
T 2w8t_A 337 ----FRLGTETCDSA-IVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAA 411 (427)
T ss_dssp ----CEESCSSCCSS-EEEEEESSHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred ----CcccCCCCCCC-EEEEEECCHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 5655 44 444 5555442 233444444569998764 2 888875 4789999999999999
Q ss_pred HHhh
Q 015435 403 VTRM 406 (407)
Q Consensus 403 l~~~ 406 (407)
++++
T Consensus 412 l~~~ 415 (427)
T 2w8t_A 412 GRAV 415 (427)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 95
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.97 E-value=1e-29 Score=242.73 Aligned_cols=328 Identities=14% Similarity=0.104 Sum_probs=224.9
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc---ccCC--CCCCcHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV---KEYL--PIVGLVDFNKLSAKLILGADSPAIKDNRVTT 103 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~y~--~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~ 103 (407)
++..+|||+.|.+ .|.+.++.+.+++.+.+. ..... ..|. ...+..++++++++++ +. ++.++
T Consensus 43 ~g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~-------~~~i~ 110 (401)
T 1fc4_A 43 DGSHVINFCANNY---LGLANHPDLIAAAKAGMD-SHGFGMASVRFICGTQDSHKELEQKLAAFL-GM-------EDAIL 110 (401)
T ss_dssp TSCEEEECCCSCT---TSCTTCHHHHHHHHHHHH-HHCSCCCSCHHHHCCBHHHHHHHHHHHHHH-TC-------SEEEE
T ss_pred CCccEEEeeccCc---ccccCCHHHHHHHHHHHH-HhCCCCCCCCcccCCcHHHHHHHHHHHHHh-CC-------CcEEE
Confidence 5678999999853 442235566666656554 11111 1231 2567889999999998 53 23444
Q ss_pred eecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC-C---CCc
Q 015435 104 VQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA-P---SGA 179 (407)
Q Consensus 104 ~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~-~---~~~ 179 (407)
+++|++++..++ ...+.+||.|+++.|+|..+...++..|.+++.++. .|++++++.+.+. + +++
T Consensus 111 --~~sGs~a~~~~~--~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~ 179 (401)
T 1fc4_A 111 --YSSCFDANGGLF--ETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHV 179 (401)
T ss_dssp --ESCHHHHHHTTH--HHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSE
T ss_pred --eCChHHHHHHHH--HHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCce
Confidence 555677888874 334679999999999998888888999999988853 4788898888631 1 456
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccc-cccC-CCCCchhHHHHHHHHcCCcEEEEEecCccc-c
Q 015435 180 IVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ-GFAS-GSLDADAQSVRMFVADGGECLVAQSYAKNM-G 256 (407)
Q Consensus 180 ~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~-~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~ 256 (407)
++++ ++|+||||.+++ +++|+++|++||+++|+||+|+ ++.. .+. ...+. +.-..+..++++|+||.+ +
T Consensus 180 ~v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~--~~~~~--~~~~~~~di~~~s~sK~~~~ 251 (401)
T 1fc4_A 180 LIAT-DGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGR--GSHEY--CDVMGRVDIITGTLGKALGG 251 (401)
T ss_dssp EEEE-ESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSC--CHHHH--TTCTTCCSEEEEESSSTTCS
T ss_pred EEEE-eCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCC--ccHHH--cCCCcCCcEEEecchhhccC
Confidence 6666 999999999988 8888889999999999999995 7763 221 11111 111124579999999999 5
Q ss_pred ccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015435 257 LYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDAL 336 (407)
Q Consensus 257 ~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 336 (407)
++| ||+ ++ ++++.+.+....... ....+++.+.+.++...++.. +..++.+++++++++++.+.|
T Consensus 252 ~~g---G~~--~~-~~~~~~~l~~~~~~~--~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L 316 (401)
T 1fc4_A 252 ASG---GYT--AA-RKEVVEWLRQRSRPY--LFSNSLAPAIVAASIKVLEMV-------EAGSELRDRLWANARQFREQM 316 (401)
T ss_dssp SSC---EEE--EE-CHHHHHHHHHHCHHH--HHSCCCCHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHH
T ss_pred CCC---EEE--Ec-CHHHHHHHHHhCcCc--eeCCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHH
Confidence 444 888 45 455544443321111 123467888888887776532 113567788899999999999
Q ss_pred HhcCCCCCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCC-------C----eEEecC-CCCCChhHHHHHHH
Q 015435 337 SARGTPGDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSD-------G----RISMAG-LSSKTVPHLTDAIH 400 (407)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~g-------g----Ris~~~-~~~e~i~~~~~~l~ 400 (407)
++.+ +.+.+ ..+.+.|+.+ +.+.+...|.++||.+.++ + ||+++. .+++++++++++|+
T Consensus 317 ~~~g----~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 391 (401)
T 1fc4_A 317 SAAG----FTLAG-ADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFT 391 (401)
T ss_dssp HHTT----CCBCC-SSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HHcC----CcccC-CCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 9886 55554 4455666654 2334444455579999764 1 888873 47899999999999
Q ss_pred HHHHhhC
Q 015435 401 AAVTRMG 407 (407)
Q Consensus 401 ~~l~~~~ 407 (407)
+++++++
T Consensus 392 ~~~~~~~ 398 (401)
T 1fc4_A 392 RIGKQLG 398 (401)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9998764
No 96
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.97 E-value=1.4e-30 Score=246.33 Aligned_cols=331 Identities=11% Similarity=0.093 Sum_probs=220.8
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
..+..++||+.|.+..+.| +.++.+.+++.+.+.+.......| +..+..++++.+++++ +. ++++++ |+
T Consensus 25 ~~g~~~ld~~~~~~~~~~g-~~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~-g~------~~~v~~--~~ 93 (375)
T 2eh6_A 25 EEGKEYLDFVSGIGVNSLG-HAYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHF-WT------EGKVFF--AN 93 (375)
T ss_dssp TTCCEEEESSHHHHTCTTC-BSCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTS-SS------CEEEEE--ES
T ss_pred CCCCEEEEcCCcccccccC-CCCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhc-CC------CCeEEE--eC
Confidence 3567899999998622233 245556666656554111112346 5567889999999987 42 278999 99
Q ss_pred CcccHHHHHHHHHH-hh---cCC-CeEEecCCCCCChHHHHhhcCceee----EEEeecCCC---CCcChhhHHHHHHcC
Q 015435 108 SGTGSLRVGAEFLA-RH---YHQ-LTIYIPQPTWGNHPKVFTLAGLSVK----TYRYYDPAT---RGLNFQGLLEDLRAA 175 (407)
Q Consensus 108 g~t~a~~~~~~~~~-~~---~~g-d~Vi~~~p~y~~~~~~~~~~G~~~~----~v~~~~~~~---~~~d~~~l~~~i~~~ 175 (407)
|+++++.++++.+. .. .+| |+|++++|+|+.+...+...+...+ ..++. +.. ...|++++++.+.
T Consensus 94 g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~~~l~-- 170 (375)
T 2eh6_A 94 SGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLV-PGFSYAKLNDIDSVYKLLD-- 170 (375)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCC-SSEEEECTTCHHHHHTTCC--
T ss_pred chHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCC-CCceeCCCchHHHHHHHhc--
Confidence 99999999965432 23 678 9999999999988776654433221 01110 000 0148899988876
Q ss_pred CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcc
Q 015435 176 PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKN 254 (407)
Q Consensus 176 ~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 254 (407)
++++++++ ++++||||.+ .+.+++++|+++|++||+++|+||+|.++...+. ..++..+ ....+++ ||||.
T Consensus 171 ~~~~~v~~-~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~-~~~~d~~---s~SK~ 242 (375)
T 2eh6_A 171 EETAGIII-EVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE---FYAYQHF-NLKPDVI---ALAKG 242 (375)
T ss_dssp TTEEEEEE-CSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGG-TCCCSEE---EECGG
T ss_pred CCeEEEEE-eCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc---chhhhhc-CCCCCEE---EEccc
Confidence 45667666 7799999999 5788899999999999999999999998765431 1111111 1112333 78899
Q ss_pred ccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435 255 MGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD 334 (407)
Q Consensus 255 ~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (407)
++ +|+|+||+ +++ +++.+.+.........+++.+.+.++..+++.. ++.+++++++++++.+
T Consensus 243 ~~-~g~~~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~l~~ 304 (375)
T 2eh6_A 243 LG-GGVPIGAI--LAR-----EEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV----------EKLLPHVREVGNYFKE 304 (375)
T ss_dssp GG-TTSCCEEE--EEE-----HHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred cc-CCCCeEEE--EEc-----HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 99 69999999 566 345554443222233466777777777666432 1566788889999999
Q ss_pred HHHhcCCCCCcccccCCceeEEecCC--CHHHHHHhHhhccEEEcCCC----eEEec-CCCCCChhHHHHHHHHHH
Q 015435 335 ALSARGTPGDWSHIIKQIGMFTFTGL--NSEQVAFMTKEYHIYMTSDG----RISMA-GLSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 335 ~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~gg----Ris~~-~~~~e~i~~~~~~l~~~l 403 (407)
.|++.+ .....+ .+.+.|+.+ +...+.+.|.++||.+.+++ ||+++ ..+++++++++++|++++
T Consensus 305 ~L~~~~----~~~~~~-~g~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 305 KLKELG----KGKVKG-RGLMLGLELERECKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp HHHHTT----SSEEEE-ETTEEEEECSSCCHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHh----cCCceE-EEEEEEEEEcCcHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 998876 222333 445666654 23344444445899998753 88876 357899999999998763
No 97
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.97 E-value=6.9e-30 Score=242.17 Aligned_cols=316 Identities=15% Similarity=0.140 Sum_probs=222.0
Q ss_pred cccchhHHHHHHHHhccccc-----cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh
Q 015435 48 PLVLNVVRKAEQLLVNDQSR-----VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR 122 (407)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~-----~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~ 122 (407)
+.++.+.+++.+.+.+.... ...|.+..+..++++.+++++ + ++++++++ |+|+++++.+++..+..
T Consensus 12 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g-----~~~~~v~~--~~g~t~a~~~~~~~~~~ 83 (384)
T 1eg5_A 12 RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL-G-----VSPSEIFF--TSCATESINWILKTVAE 83 (384)
T ss_dssp CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH-T-----SCGGGEEE--ESCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHc-C-----CCCCeEEE--ECCHHHHHHHHHHhhhh
Confidence 44666666666666411001 112333456789999999998 4 23478999 99999999999644421
Q ss_pred --hcCCCeEEecCCCCCChHHHH---hhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCH
Q 015435 123 --HYHQLTIYIPQPTWGNHPKVF---TLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTL 197 (407)
Q Consensus 123 --~~~gd~Vi~~~p~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~ 197 (407)
..+||+|++++|+|+++...+ +..|.+++.+|.+ .++.+|++++++.+. ++++++++ ++|+||||.+++
T Consensus 84 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~- 157 (384)
T 1eg5_A 84 TFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD--SRGVVKLEELEKLVD--EDTFLVSI-MAANNEVGTIQP- 157 (384)
T ss_dssp HTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC--TTSCBCHHHHHHHCC--TTEEEEEE-ESBCTTTCBBCC-
T ss_pred hccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccC--CCCccCHHHHHHHhC--CCCeEEEE-ECCCCCcccccC-
Confidence 168999999999999886666 6789999999983 356799999999987 45667666 899999999998
Q ss_pred HHHHHHHHHHHHcC--ceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhH
Q 015435 198 EQWEQIRQLMRSKG--LLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVA 275 (407)
Q Consensus 198 ~~l~~i~~~~~~~~--~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~ 275 (407)
+++|+++|++|| +++|+|++|+ +..... + + ...+..++++|+||.+|++| +||+ +++++ +
T Consensus 158 --~~~i~~l~~~~~~~~~li~Dea~~-~~~~~~--~------~-~~~~~di~~~s~sK~~g~~G--~G~~--~~~~~-~- 219 (384)
T 1eg5_A 158 --VEDVTRIVKKKNKETLVHVDAVQT-IGKIPF--S------L-EKLEVDYASFSAHKFHGPKG--VGIT--YIRKG-V- 219 (384)
T ss_dssp --HHHHHHHHHHHCTTCEEEEECTTT-TTTSCC--C------C-TTTCCSEEEEEGGGGTSCTT--CEEE--EECTT-S-
T ss_pred --HHHHHHHHHhcCCceEEEEEhhhh-cCCccc--C------c-hhcCCCEEEecHHHhcCCCc--eEEE--EEcCC-C-
Confidence 678888899999 9999999987 322111 1 1 11245788999999998878 7998 56632 1
Q ss_pred HHHHHHHhhh---hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC-
Q 015435 276 SRVESQLKLV---IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ- 351 (407)
Q Consensus 276 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~- 351 (407)
++...+... ......+++.+.+.++..+++.. .+.+++.+++++++++++.+.|++.+ +.+..+.
T Consensus 220 -~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~ 288 (384)
T 1eg5_A 220 -PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA------VEELSEAAKHMEKLRSKLVSGLMNLG----AHIITPLE 288 (384)
T ss_dssp -CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH------HHTHHHHHHHHHHHHHHHHHHHHTTT----CEECSCTT
T ss_pred -ccccccccCcccccccCCCCChHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHhCCCC----eEEeCCcc
Confidence 111111111 11233467788888777777642 24567888899999999999998855 5544331
Q ss_pred -----ceeEEecCCCHHHHHHhHhhccEEEcCC-------------------------C--eEEecC-CCCCChhHHHHH
Q 015435 352 -----IGMFTFTGLNSEQVAFMTKEYHIYMTSD-------------------------G--RISMAG-LSSKTVPHLTDA 398 (407)
Q Consensus 352 -----~~~~~~~~~~~~~~~~~l~~~gi~~~~g-------------------------g--Ris~~~-~~~e~i~~~~~~ 398 (407)
...|.+.+.+.+.+.+.|.++||.+.+| + ||+++. .+++++++++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 368 (384)
T 1eg5_A 289 ISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKK 368 (384)
T ss_dssp SBCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCCCEEEEEeCCCCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHH
Confidence 1222333556666666667799999873 2 899874 478999999999
Q ss_pred HHHHHHhh
Q 015435 399 IHAAVTRM 406 (407)
Q Consensus 399 l~~~l~~~ 406 (407)
|+++++++
T Consensus 369 l~~~~~~~ 376 (384)
T 1eg5_A 369 IEEILSFL 376 (384)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998764
No 98
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.97 E-value=2e-29 Score=241.33 Aligned_cols=328 Identities=15% Similarity=0.062 Sum_probs=222.2
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc----CCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE----YLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTV 104 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~ 104 (407)
.+++++||+.+.+ .+.+.++.+++++.+++.+.....+. |+......++++.+++++ +. ++.++
T Consensus 57 ~g~~~ld~~s~~~---l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~-------~~~i~- 124 (409)
T 3kki_A 57 ASPDDIILQSNDY---LALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT-GF-------DECLL- 124 (409)
T ss_dssp CCTTSEECCCSCT---TCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH-TC-------SEEEE-
T ss_pred CCCceEEeeccCc---cCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh-CC-------CeEEE-
Confidence 4678999988764 44455667777777777621111111 222344678999999988 43 34555
Q ss_pred ecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEe
Q 015435 105 QCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH 184 (407)
Q Consensus 105 ~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~ 184 (407)
+++|++++..++ ...+.+||.|+++.|+|..+...+...|.+++.++. .|++++++.+.+. +++++++
T Consensus 125 -~~sGt~a~~~~l--~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~-~~~~vi~- 192 (409)
T 3kki_A 125 -SQSGWNANVGLL--QTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQRH-GPGIIVV- 192 (409)
T ss_dssp -ESCHHHHHHHHH--HHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHHH-CSCEEEE-
T ss_pred -ecchHHHHHHHH--HHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHhc-CCeEEEE-
Confidence 666689998884 444789999999999999999999999999987754 5899999999742 3466666
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcce
Q 015435 185 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGA 264 (407)
Q Consensus 185 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 264 (407)
++|+||||.+.+ +++|+++|++||++||+||+|..+.++.. .......+....+..+++.|+||.++++| ||
T Consensus 193 ~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~--g~~~~~~~~~~~~~di~~~s~sK~~~~~g---g~ 264 (409)
T 3kki_A 193 DSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPN--GAGLLAELGLTREVHFMTASLAKTFAYRA---GA 264 (409)
T ss_dssp ESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG--GCCHHHHHTCGGGCSEEEEESSSTTCSSC---EE
T ss_pred CCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCC--CCcchhhcCCCCCCCEEEeecchhhCCCc---eE
Confidence 899999999988 88899999999999999999987544311 11111112111234588999999998653 88
Q ss_pred eEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015435 265 LSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGD 344 (407)
Q Consensus 265 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 344 (407)
+ ++ ++++.+.+........ ...+.+...+.++...++.. +..++++++++++++++.+.|++.+
T Consensus 265 v--~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~aa~~aal~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g---- 328 (409)
T 3kki_A 265 I--WC-NNEVNRCVPFISYPAI--FSSTLLPYEAAGLETTLEII-------ESADNRRQHLDRMARKLRIGLSQLG---- 328 (409)
T ss_dssp E--EE-SSSGGGTHHHHCHHHH--HSBCCCHHHHHHHHHHHHHH-------HHCHHHHHHHHHHHHHHHHHHHTTT----
T ss_pred E--EE-CHHHHHHHHHhCcCcc--ccCCCcHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHcC----
Confidence 7 44 4554444433222111 12245555555665555432 2225778889999999999999887
Q ss_pred cccccCCceeEEecCC----CHHHHHHhHhhccEEEcC-------CC----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 345 WSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTS-------DG----RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 345 ~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~-------gg----Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
+.+. + .+.+.|+.+ +.+.+.+.|.++||.+.+ .+ ||+++. .+++++++++++|++++++.
T Consensus 329 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 404 (409)
T 3kki_A 329 LTIR-S-ESQIIGLETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYG 404 (409)
T ss_dssp CCCC-C-SSSEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred CccC-C-CCCEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcC
Confidence 5544 2 344555533 123344444446999853 22 888864 47899999999999998764
No 99
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.97 E-value=5.4e-29 Score=237.68 Aligned_cols=334 Identities=14% Similarity=0.049 Sum_probs=219.4
Q ss_pred CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccc----cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435 30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSR----VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ 105 (407)
Q Consensus 30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~ 105 (407)
++++++++.+.. .+.+.++.+.+++.+.+.+.... ...|....+..++|+++++++ +. +++|++
T Consensus 45 g~~~i~~~~~~~---~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~~------~~~i~~-- 112 (401)
T 2bwn_A 45 KQDITVWCGNDY---LGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH-QK------EAALVF-- 112 (401)
T ss_dssp EEEEEECSCSCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT-TC------SEEEEE--
T ss_pred CCcEEEeeCCCc---ccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHh-CC------CcEEEE--
Confidence 356788876542 24334556666666666410111 123555568999999999998 42 367777
Q ss_pred cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC--CCCcEEEE
Q 015435 106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--PSGAIVLL 183 (407)
Q Consensus 106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--~~~~~v~i 183 (407)
++|++ ++..+..++....+||.|+++.|+|..+...++..|.+++.++.+ |++++++.+.+. ++++++++
T Consensus 113 ~sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~~~~~~v~~ 184 (401)
T 2bwn_A 113 SSAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAF 184 (401)
T ss_dssp SCHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEE
T ss_pred CCcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhccCCceEEEE
Confidence 77766 666664333224589999999999999999999999999998761 788888888643 24556555
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcc
Q 015435 184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVG 263 (407)
Q Consensus 184 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 263 (407)
++|+||||.+++ +++|+++|++||+++|+|++|....++....... .......+..++++|+||.++++| |
T Consensus 185 -~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~--~~~~~~~~~~i~~~s~sK~~~~~G---G 255 (401)
T 2bwn_A 185 -ESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA--ERDGLMHRIDIFNGTLAKAYGVFG---G 255 (401)
T ss_dssp -ESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH--HHHTCGGGCSEEEEESSSTTCSCC---E
T ss_pred -ecCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCCceee--eccCccccCcEEEeechhhccCCC---C
Confidence 999999999987 7888889999999999999998544431111111 111111134688999999999887 8
Q ss_pred eeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015435 264 ALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG 343 (407)
Q Consensus 264 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 343 (407)
|+ +++ +++.+.+....... . ...+.+.+.+.++..+++... . ...++.+++++++++++.+.|++.+
T Consensus 256 ~~--~~~-~~~~~~l~~~~~~~-~-~~~~~~~~~~~a~~~al~~~~---~--~~~~~~~~~~~~~~~~l~~~L~~~g--- 322 (401)
T 2bwn_A 256 YI--AAS-ARMVDAVRSYAPGF-I-FSTSLPPAIAAGAQASIAFLK---T--AEGQKLRDAQQMHAKVLKMRLKALG--- 322 (401)
T ss_dssp EE--EEC-HHHHHHHHHHCHHH-H-TSBCCCHHHHHHHHHHHHHHT---S--HHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred EE--ecC-HHHHHHHHHhCcCc-e-ecCCCCHHHHHHHHHHHHHHH---h--cccHHHHHHHHHHHHHHHHHHHHCC---
Confidence 98 454 55444433211111 1 122344566666665554221 0 1246778889999999999998876
Q ss_pred CcccccCCceeEEecCCC----HHHHH-HhHhhccEEEcCC-------C----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 344 DWSHIIKQIGMFTFTGLN----SEQVA-FMTKEYHIYMTSD-------G----RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~----~~~~~-~~l~~~gi~~~~g-------g----Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
+.+..+.++ +.|+.+. ...+. .+++++||.+.|+ | ||+++. .+++++++++++|+++++++
T Consensus 323 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 323 -MPIIDHGSH-IVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp -CCBCCCSSS-CEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred -CcccCCCCC-eEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 566666666 4555442 23344 4546789999652 2 888874 47899999999999998876
Q ss_pred C
Q 015435 407 G 407 (407)
Q Consensus 407 ~ 407 (407)
|
T Consensus 401 ~ 401 (401)
T 2bwn_A 401 A 401 (401)
T ss_dssp -
T ss_pred C
Confidence 5
No 100
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.97 E-value=3.6e-29 Score=241.43 Aligned_cols=336 Identities=12% Similarity=0.083 Sum_probs=215.1
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
..+++++|++.|.+..+.| +.++.+++++.+++. ......| +.....++++++++++.+ .+++++ |+
T Consensus 52 ~~g~~ylD~~~~~~~~~lG-~~~p~v~~a~~~~~~--~~~~~~~-~~~~~~~l~~~la~~~~~-------~~~v~~--~~ 118 (434)
T 3l44_A 52 VDGNKYIDYLAAYGPIITG-HAHPHITKAITTAAE--NGVLYGT-PTALEVKFAKMLKEAMPA-------LDKVRF--VN 118 (434)
T ss_dssp TTCCEEEECCGGGTTCSSC-BTCHHHHHHHHHHHH--HCSCCSS-CCHHHHHHHHHHHHHCTT-------CSEEEE--ES
T ss_pred CCCCEEEECCCchhccccC-CCCHHHHHHHHHHHH--hCcCCCC-CCHHHHHHHHHHHHhCCC-------CCEEEE--eC
Confidence 4578999999998655666 567778888877776 2222334 556677888888887621 389999 99
Q ss_pred CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCc-eeeEEEeecCCCCC--------------cChhhHHHHH
Q 015435 108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRG--------------LNFQGLLEDL 172 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~-~~~~v~~~~~~~~~--------------~d~~~l~~~i 172 (407)
||+++++.+++++....+++.|++++|+|+++.......+. ....+.. +...+ .|++++++.+
T Consensus 119 sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~le~~l 196 (434)
T 3l44_A 119 SGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGT--PDSAGVPQSIAQEVITVPFNNVETLKEAL 196 (434)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCC--BSSTTCCHHHHTTEEEECTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCC--CCcCCCCCcCCCceEecCcccHHHHHHHH
Confidence 99999999976654445789999999999887665443322 1111111 00011 1889999988
Q ss_pred HcCCCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEec
Q 015435 173 RAAPSGAIVLLHACAHNPTGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSY 251 (407)
Q Consensus 173 ~~~~~~~~v~i~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 251 (407)
.+.+.+..++++++++|++|.+. +++++++|.++|++||++||+||+|.+| ..+. ......+ ....+ +.+|
T Consensus 197 ~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~---~~~~~~~-~~~~d---i~t~ 268 (434)
T 3l44_A 197 DKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMY---GGAQDLL-GVTPD---LTAL 268 (434)
T ss_dssp HHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSS---SCHHHHH-TCCCS---EEEE
T ss_pred HhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccc---cHHHHHc-CCCCC---eeeh
Confidence 74323344444344455566654 8999999999999999999999999988 4431 2222222 11122 4478
Q ss_pred CccccccCCCcceeEEeecChhhHHHHHHHHhhh---hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 015435 252 AKNMGLYGERVGALSIVCKTEDVASRVESQLKLV---IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISM 328 (407)
Q Consensus 252 sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (407)
||.++ +|+|+||+ +++ +++.+.+... ....+++++++++.++.++++... + +...++++++
T Consensus 269 sK~~~-~G~~iG~~--~~~-----~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~------~--~~~~~~~~~~ 332 (434)
T 3l44_A 269 GKVIG-GGLPIGAY--GGK-----KEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQ------Q--EGLYEKLDEL 332 (434)
T ss_dssp EGGGG-TTSSCEEE--EEC-----HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHT------S--TTHHHHHHHH
T ss_pred hhhhc-CCcCeeeE--EEc-----HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHH------c--ccHHHHHHHH
Confidence 99999 89999999 565 4455555431 123345778888888887776321 0 1233444445
Q ss_pred HHHHHHHHHh----cCCCCCcccccCCceeEEec--C--C---------C---HHHHHHhHhhccEEEcCCC----eEEe
Q 015435 329 RQQLFDALSA----RGTPGDWSHIIKQIGMFTFT--G--L---------N---SEQVAFMTKEYHIYMTSDG----RISM 384 (407)
Q Consensus 329 ~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~--~--~---------~---~~~~~~~l~~~gi~~~~gg----Ris~ 384 (407)
++++.+.|++ .+. .....+.+.++.+. . . + ...+.+.|.++||.+.+++ |+++
T Consensus 333 ~~~l~~~L~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~rl~~ 409 (434)
T 3l44_A 333 GATLEKGILEQAAKHNI---DITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFLTT 409 (434)
T ss_dssp HHHHHHHHHHHHHHTTC---CEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTTCCEECCT
T ss_pred HHHHHHHHHHHHHhCCC---CEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCCCcEEEec
Confidence 5555555544 342 22334445554442 1 1 1 1334444555899999976 6665
Q ss_pred cCCCCCChhHHHHHHHHHHHhh
Q 015435 385 AGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 385 ~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
. .+++++++++++|+++++++
T Consensus 410 ~-~t~e~i~~~l~~l~~~l~~~ 430 (434)
T 3l44_A 410 E-HTKEDIEYTIEAVGRAFAAL 430 (434)
T ss_dssp T-CCHHHHHHHHHHHHHHHHHH
T ss_pred c-cCHHHHHHHHHHHHHHHHHH
Confidence 5 48899999999999998754
No 101
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.97 E-value=2.1e-29 Score=242.78 Aligned_cols=347 Identities=10% Similarity=0.037 Sum_probs=205.1
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
..+++++|++.|.+..+.| +.++.+++++.+++. . ...|.+..+..+.++++++++....+ .+.++|++ |+
T Consensus 26 ~~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~--~--~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~--~~ 96 (430)
T 3i4j_A 26 DAGRRYLDGSSGALVANIG-HGRAEVGERMAAQAA--R--LPFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWA--VS 96 (430)
T ss_dssp TTSCEEEETTHHHHTCTTC-BCCHHHHHHHHHHHH--H--CCCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEE--ES
T ss_pred CCCCEEEECCCchhccccC-CCCHHHHHHHHHHHH--h--cccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eC
Confidence 3568899999997655666 557777887777775 2 12233333444455555555422221 23479999 99
Q ss_pred CcccHHHHHHHHHHhh------cCCCeEEecCCCCCChHHHHhhcCc---------------eeeEEEeecCCC---CCc
Q 015435 108 SGTGSLRVGAEFLARH------YHQLTIYIPQPTWGNHPKVFTLAGL---------------SVKTYRYYDPAT---RGL 163 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~------~~gd~Vi~~~p~y~~~~~~~~~~G~---------------~~~~v~~~~~~~---~~~ 163 (407)
||+++++.+++++... .+++.|++.+|+|+++.......+. .+..++. +.. ...
T Consensus 97 gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 174 (430)
T 3i4j_A 97 GGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPK--PDPARNGAE 174 (430)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECC--CCTTSCHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCC--CcccchhhH
Confidence 9999999997665433 4578999999999988765554433 2333333 111 123
Q ss_pred ChhhHHHHHHcC-CCCcEEEEecCCCC-CCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435 164 NFQGLLEDLRAA-PSGAIVLLHACAHN-PTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA 240 (407)
Q Consensus 164 d~~~l~~~i~~~-~~~~~v~i~~~p~N-PtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~ 240 (407)
|++++++.+.+. +.+..++++..++| ++|. +++.+++++|+++|++||++||+||+|.+|+..+. ......+..
T Consensus 175 ~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~---~~~~~~~~~ 251 (430)
T 3i4j_A 175 DAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS---PLALSRWSG 251 (430)
T ss_dssp HHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGTTT
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc---hhhhhhhcC
Confidence 568888888632 13344444345566 7887 67888999999999999999999999999876542 111111101
Q ss_pred cCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhh----hhcccCCCChhHHHHHHHHhcChhhHHhHH
Q 015435 241 DGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLV----IRPMYSSPPIHGASIVATILKDSTMYKEWT 315 (407)
Q Consensus 241 ~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 315 (407)
...+ +.+|||.++ .| +|+||+ +++ ++ +.+.+... ....+++.+++++.++.++++...- .
T Consensus 252 ~~~d---i~t~sK~l~-~G~~r~G~~--~~~-~~----i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~ 316 (430)
T 3i4j_A 252 VTPD---IAVLGKGLA-AGYAPLAGL--LAA-PQ----VYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVER----E 316 (430)
T ss_dssp CCCS---EEEECGGGT-TTSSCCEEE--EEC-HH----HHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHH----T
T ss_pred CCCc---EEEEccccc-CCccccEEE--EEC-HH----HHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHc----c
Confidence 1122 336899999 59 999999 565 44 44444432 3334557888999988888864320 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCCC------------HHHHHHhHhhccEEEcCC----
Q 015435 316 LELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLN------------SEQVAFMTKEYHIYMTSD---- 379 (407)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~~~~g---- 379 (407)
+..++.++..+..++.+.+.+...+. +....+.+.++.+.-.+ ...+.+.+.++||.+.|+
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~ 393 (430)
T 3i4j_A 317 DLTGAAKERGAQLLAGLQALQARFPQ---MMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAE 393 (430)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCTT---EEEEEEETTEEEEEEC------------CHHHHHHHHHHTTEECC------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCC---eEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEeccccc
Confidence 12233333333333444443333332 44455555544432111 133444455689999986
Q ss_pred ----C---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 380 ----G---RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 380 ----g---Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
+ ||+++. .+++++++++++|+++++++
T Consensus 394 ~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 394 PNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp -----CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2 888763 47899999999999998764
No 102
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.97 E-value=5.6e-29 Score=238.87 Aligned_cols=331 Identities=13% Similarity=0.091 Sum_probs=218.6
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc-ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV-KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC 106 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t 106 (407)
..++.++||+.|.+.++.| +.++.+++++.+++. ..... ..| +.....++++.+++++ + .+++++ |
T Consensus 54 ~~g~~~lD~~~~~~~~~lG-~~~p~v~~ai~~~~~-~~~~~~~~~-~~~~~~~l~~~la~~~-g-------~~~v~~--~ 120 (420)
T 2pb2_A 54 QQGKEYIDFAGGIAVTALG-HCHPALVEALKSQGE-TLWHTSNVF-TNEPALRLGRKLIDAT-F-------AERVLF--M 120 (420)
T ss_dssp TTCCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHT-TCCCCCTTS-CCHHHHHHHHHHHHHS-S-------CSEEEE--E
T ss_pred CCCCEEEEccccccccccC-CCCHHHHHHHHHHHH-hcccccCcc-CCHHHHHHHHHHHhhC-C-------CCeEEE--e
Confidence 3568899999986544456 456677777777775 21111 113 3334556666666665 3 278999 9
Q ss_pred CCcccHHHHHHHHHHhhc-----CC-CeEEecCCCCCChHH-HHhhcCce------------eeEEEeecCCCCCcChhh
Q 015435 107 LSGTGSLRVGAEFLARHY-----HQ-LTIYIPQPTWGNHPK-VFTLAGLS------------VKTYRYYDPATRGLNFQG 167 (407)
Q Consensus 107 ~g~t~a~~~~~~~~~~~~-----~g-d~Vi~~~p~y~~~~~-~~~~~G~~------------~~~v~~~~~~~~~~d~~~ 167 (407)
+||++|++++++++.... +| ++|++++|+|+++.. .+...|.+ +..++. .|+++
T Consensus 121 ~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~ 193 (420)
T 2pb2_A 121 NSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHA 193 (420)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHH
Confidence 999999999975543221 56 489999999987754 34445543 333332 38899
Q ss_pred HHHHHHcCCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435 168 LLEDLRAAPSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246 (407)
Q Consensus 168 l~~~i~~~~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i 246 (407)
+++.+. ++++++++ ++++|++|+ +++.+++++|+++|++||++||+||+|.++.+.+. ......+ ....+++
T Consensus 194 le~~i~--~~~~~vi~-~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~---~~~~~~~-~~~~dii 266 (420)
T 2pb2_A 194 VKAVMD--DHTCAVVV-EPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD---LFAYMHY-GVTPDIL 266 (420)
T ss_dssp HHHHCC--TTEEEEEE-CSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHHHHH-TCCCSEE
T ss_pred HHHHhc--cCceEEEE-eCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCc---HHHHHhc-CCCCCeE
Confidence 999887 45666666 777888885 59999999999999999999999999988876542 2222222 2223333
Q ss_pred EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII 326 (407)
Q Consensus 247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 326 (407)
||||.++ +|+|+||+ +++ +++.+.+.......+++++.+++.++...++... + ++..++++
T Consensus 267 ---t~sK~l~-~G~~iG~~--~~~-----~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~------~--~~~~~~~~ 327 (420)
T 2pb2_A 267 ---TSAKALG-GGFPVSAM--LTT-----QEIASAFHVGSHGSTYGGNPLACAVAGAAFDIIN------T--PEVLQGIH 327 (420)
T ss_dssp ---EECGGGG-TTSCCEEE--EEC-----HHHHTTCC----CCEECCCHHHHHHHHHHHHHHS------S--HHHHHHHH
T ss_pred ---Eeccccc-CCCceEEE--EEh-----HHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHH------h--ccHHHHHH
Confidence 6899999 89999999 576 3344444432233445778888888877775332 1 24556777
Q ss_pred HHHHHHHHHHHhc--CCCCCcccccCCceeEEecCC------CHHHHHHhHhhccEEEcCCC----eEEec-CCCCCChh
Q 015435 327 SMRQQLFDALSAR--GTPGDWSHIIKQIGMFTFTGL------NSEQVAFMTKEYHIYMTSDG----RISMA-GLSSKTVP 393 (407)
Q Consensus 327 ~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~gg----Ris~~-~~~~e~i~ 393 (407)
++++++.+.|+++ +.+ .+....+.+.+ .++.+ +.+.+.+.|.++||.+.+++ ||++. ..++++++
T Consensus 328 ~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~-~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~ 405 (420)
T 2pb2_A 328 TKRQQFVQHLQAIDEQFD-IFSDIRGMGLL-IGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIH 405 (420)
T ss_dssp HHHHHHHHHHHHHHHHHC-CEEEEEEETTE-EEEEECGGGTTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-CeEEEEecceE-EEEEECCCchHHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHHH
Confidence 7788888877765 211 02223444444 44432 34445444555899999875 88854 25889999
Q ss_pred HHHHHHHHHHHhh
Q 015435 394 HLTDAIHAAVTRM 406 (407)
Q Consensus 394 ~~~~~l~~~l~~~ 406 (407)
+++++|+++++++
T Consensus 406 ~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 406 EGMQRFAQAVGKV 418 (420)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
No 103
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.96 E-value=7e-29 Score=239.03 Aligned_cols=337 Identities=15% Similarity=0.047 Sum_probs=219.9
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
..+++++|++.|.+..+.| +.++.+++++.+++. ..... +.+.....++++++++++.+ .+++++ |+
T Consensus 50 ~~g~~ylD~~~~~~~~~lG-~~~p~v~~A~~~~~~--~~~~~-~~~~~~~~~l~~~la~~~~~-------~~~v~~--~~ 116 (429)
T 3k28_A 50 IDGNEYIDYVLSWGPLIHG-HANDRVVEALKAVAE--RGTSF-GAPTEIENKLAKLVIERVPS-------IEIVRM--VN 116 (429)
T ss_dssp TTCCEEEESCGGGTTCTTC-BSCHHHHHHHHHHHH--HCSCC-SSCCHHHHHHHHHHHHHSTT-------CSEEEE--ES
T ss_pred CCCCEEEECCCChhhcccC-CCCHHHHHHHHHHHh--hCcCc-CCCCHHHHHHHHHHHHhCCC-------CCEEEE--eC
Confidence 4578999999998765667 567788888878776 22222 34666778899999988731 389999 99
Q ss_pred CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcCceeeEEEeecCCCCC------------cChhhHHHHHHc
Q 015435 108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAGLSVKTYRYYDPATRG------------LNFQGLLEDLRA 174 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~------------~d~~~l~~~i~~ 174 (407)
||+++++.+++++....+++.|++.+|+|+++..... ..|..+..++........ -|++++++.+.+
T Consensus 117 ~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~ 196 (429)
T 3k28_A 117 SGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQ 196 (429)
T ss_dssp SHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHh
Confidence 9999999997666544577899999999987655443 223222222221010000 178999998874
Q ss_pred CCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCc
Q 015435 175 APSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAK 253 (407)
Q Consensus 175 ~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 253 (407)
.+.+..++++.+++|++|.+ .+++++++|.++|++||++||+||+|.+| ..+ .......+ ....+ +.+|||
T Consensus 197 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~~~~-~~~~d---i~t~sK 268 (429)
T 3k28_A 197 FGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVA---YNCGQGYY-GVTPD---LTCLGK 268 (429)
T ss_dssp HGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSS---TTHHHHHH-TCCCS---EEEECG
T ss_pred CCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchHHHHh-CCCCc---eehhhh
Confidence 33333444424444555655 46888999999999999999999999988 543 22222222 21222 347899
Q ss_pred cccccCCCcceeEEeecChhhHHHHHHHHhhhh---hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHH
Q 015435 254 NMGLYGERVGALSIVCKTEDVASRVESQLKLVI---RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQ 330 (407)
Q Consensus 254 ~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (407)
.++ .|+|+||+ +++ +++.+.+.... ...+++++++++.++.++++..+ ++.+++++++++
T Consensus 269 ~~~-~G~~iG~~--~~~-----~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~---------~~~~~~~~~~~~ 331 (429)
T 3k28_A 269 VIG-GGLPVGAY--GGK-----AEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT---------PESYVEFERKAE 331 (429)
T ss_dssp GGG-TTSCCEEE--EEC-----HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC---------HHHHHHHHHHHH
T ss_pred hhc-CCCCeEEE--EEc-----HHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 998 59999999 566 44555554321 22345778899999988887542 344556666666
Q ss_pred HHHHHHHhc----CCCCCcccccCCceeEEecCC-------------C---HHHHHHhHhhccEEEcCCC----eEEecC
Q 015435 331 QLFDALSAR----GTPGDWSHIIKQIGMFTFTGL-------------N---SEQVAFMTKEYHIYMTSDG----RISMAG 386 (407)
Q Consensus 331 ~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~l~~~gi~~~~gg----Ris~~~ 386 (407)
++.+.|++. +. .....+.+.++.|.-. + .+.+.+.|.++||.+.|+| |+++..
T Consensus 332 ~l~~~L~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~r~~~~~ 408 (429)
T 3k28_A 332 MLEAGLRKAAEKHGI---PHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLSTVH 408 (429)
T ss_dssp HHHHHHHHHHHHTTC---CCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCBCCCTTC
T ss_pred HHHHHHHHHHhhCCC---CEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCCCCCEEEECCC
Confidence 666666553 32 2333444555544311 1 1334444456899999975 777654
Q ss_pred CCCCChhHHHHHHHHHHHhh
Q 015435 387 LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 387 ~~~e~i~~~~~~l~~~l~~~ 406 (407)
+++++++++++|+++++++
T Consensus 409 -t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 409 -SDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp -CHHHHHHHHHHHHHHHHTC
T ss_pred -CHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998765
No 104
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.96 E-value=2.5e-29 Score=235.29 Aligned_cols=319 Identities=13% Similarity=0.112 Sum_probs=205.4
Q ss_pred CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCccc
Q 015435 32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTG 111 (407)
Q Consensus 32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~ 111 (407)
++|||+.+.. +.|.+.+.+++.... . ....|.+..+..++++++++++ +. +++++ ++||++
T Consensus 4 ~~i~~~~~~~------~~p~~~~~~a~~~~~--~-~~~~y~~~~~~~~l~~~la~~~-g~-------~~~~~--~~~gt~ 64 (347)
T 1jg8_A 4 MMIDLRSDTV------TKPTEEMRKAMAQAE--V-GDDVYGEDPTINELERLAAETF-GK-------EAALF--VPSGTM 64 (347)
T ss_dssp -CEECSCGGG------CCCCHHHHHHHHTCC--C-CCGGGTCCHHHHHHHHHHHHHH-TC-------SEEEE--ESCHHH
T ss_pred eEEEeccccC------CCCCHHHHHHHhcCC--C-CCcccCCChHHHHHHHHHHHHh-CC-------ceEEE--ecCcHH
Confidence 5789997763 334444444443322 1 1235777788999999999998 53 46788 889999
Q ss_pred HHHHHHHHHHhhcCCCeEEecCCCCCChH---HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC----CCCcEEEEe
Q 015435 112 SLRVGAEFLARHYHQLTIYIPQPTWGNHP---KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA----PSGAIVLLH 184 (407)
Q Consensus 112 a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~----~~~~~v~i~ 184 (407)
++.+++ ...+.+||+|++++|+|.... ..+...|++++.+ . +.++.+|++++++++++. ++++++++
T Consensus 65 a~~~~~--~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~--~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~- 138 (347)
T 1jg8_A 65 GNQVSI--MAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-P--GKNGAMDPDDVRKAIRPRNIHFPRTSLIAI- 138 (347)
T ss_dssp HHHHHH--HHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-C--EETTEECHHHHHHHSCCSCTTSCCEEEEEE-
T ss_pred HHHHHH--HHhcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-c--CCCCccCHHHHHHHhccccccccCceEEEE-
Confidence 988774 444779999999999986432 2567789999888 4 234568999999998731 13556665
Q ss_pred cCCCCCC-CCCCCHHHHHHHHHHHHHcCceeeeccccccc--cCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC
Q 015435 185 ACAHNPT-GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGF--ASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER 261 (407)
Q Consensus 185 ~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 261 (407)
++||||| |.+++.+++++|+++|++||+++|+|++|..+ .+.+. + ...+....+ .++.|+||.++++
T Consensus 139 ~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~--~---~~~~~~~~d--~~~~s~sK~l~~~--- 208 (347)
T 1jg8_A 139 ENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV--P---VKEYAGYAD--SVMFCLSKGLCAP--- 208 (347)
T ss_dssp ESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC--C---HHHHHHTCS--EEEEESSSTTCCS---
T ss_pred eccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC--C---hHHhccccc--EEEEecccccCCC---
Confidence 9999999 99999999999999999999999999986421 11111 1 112222233 3345899998743
Q ss_pred cceeEEeecChhhHHHHHHHHhhhhhcccCC--CChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435 262 VGALSIVCKTEDVASRVESQLKLVIRPMYSS--PPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR 339 (407)
Q Consensus 262 ~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 339 (407)
+|++ ++.++++.+++.. .......+ .+...+.++...++.. .+.+ ++..++++++.+.|++.
T Consensus 209 ~G~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~-~~~~~~~~~l~~~L~~~ 272 (347)
T 1jg8_A 209 VGSV--VVGDRDFIERARK----ARKMLGGGMRQAGVLAAAGIIALTKM---------VDRL-KEDHENARFLALKLKEI 272 (347)
T ss_dssp SCEE--EEECHHHHHHHHH----HHHHHTCCCSSTHHHHHHHHHHHHHS---------STTH-HHHHHHHHHHHHHHHHH
T ss_pred ceEE--EEcCHHHHHHHHH----HHHHcCCchhHHHHHHHHHHHHHHHH---------HHHH-HHHHHHHHHHHHHHHhc
Confidence 6864 3555554444322 22222222 2333334444344321 1111 12234567778888776
Q ss_pred CCCCCccc--ccCCceeEEecCC-----CHHHHHHhHhhccEEEcCCC----eEEec-CCCCCChhHHHHHHHHHHHhh
Q 015435 340 GTPGDWSH--IIKQIGMFTFTGL-----NSEQVAFMTKEYHIYMTSDG----RISMA-GLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 340 ~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~gg----Ris~~-~~~~e~i~~~~~~l~~~l~~~ 406 (407)
+ +.+ ..+.++ +.|+.+ +.+.+.+.|.++||.+.+++ ||++. ..+++++++++++|+++++++
T Consensus 273 ~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 273 G----YSVNPEDVKTN-MVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp T----CBCCGGGCCSS-EEEEECTTSSSCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred C----ceeccCCCcce-EEEEEcccccCCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 5 332 233444 455533 35555554556899998864 88874 357899999999999998764
No 105
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.96 E-value=2.4e-29 Score=239.62 Aligned_cols=337 Identities=15% Similarity=0.135 Sum_probs=220.7
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
.+..++||+.|.+..+.| +.++.+.+++.+.+.........| +.....++++.+++++ +. +++++++ |+|
T Consensus 43 ~g~~~ld~~~~~~~~~~g-~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-~~-----~~~~v~~--~~g 112 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLG-HGNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAIL-PP-----ELNRVFP--VNS 112 (395)
T ss_dssp TSCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTS-CT-----TEEEEEE--ESS
T ss_pred CCCEEEEccCccccccCC-CCCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhc-CC-----CcCEEEE--cCc
Confidence 457899999986533455 456666666666664111111123 4455677888888876 32 3478999 999
Q ss_pred cccHHHHHHHHHHhhcCCCeEEecCCCCCCh-HHHHhhcCceeeE---EEeecCC--CCCcChhhHHHHHHcCCCCcEEE
Q 015435 109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNH-PKVFTLAGLSVKT---YRYYDPA--TRGLNFQGLLEDLRAAPSGAIVL 182 (407)
Q Consensus 109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~-~~~~~~~G~~~~~---v~~~~~~--~~~~d~~~l~~~i~~~~~~~~v~ 182 (407)
|++++.++++.+..+.+||.|++++|+|+.. ...+...|.+.+. +|+..+. -...|++++++.+. +++++++
T Consensus 113 g~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~--~~~~~v~ 190 (395)
T 1vef_A 113 GTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVD--EETAAVI 190 (395)
T ss_dssp HHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCC--TTEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhc--cCEEEEE
Confidence 9999999965443235889999999999764 4466666765321 1110000 00148999999887 4556655
Q ss_pred EecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC
Q 015435 183 LHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER 261 (407)
Q Consensus 183 i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 261 (407)
+ ++++||||.+ .+.+++++|+++|++||++||+||+|.++...+. ..++... ....+++ ||||.++. |+|
T Consensus 191 ~-~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~---~~~~~~~-~~~~d~~---s~sK~~~~-g~~ 261 (395)
T 1vef_A 191 L-EPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK---RFAFEHF-GIVPDIL---TLAKALGG-GVP 261 (395)
T ss_dssp E-CSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCCCSEE---EECGGGGT-TSS
T ss_pred E-eCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc---hhHhhhc-CCCCCEE---EEcccccC-CCc
Confidence 5 6668899986 4788899999999999999999999997765432 1112222 2122333 88999995 999
Q ss_pred cceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015435 262 VGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGT 341 (407)
Q Consensus 262 ~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 341 (407)
+||+ +++ +++.+.+.......+.+++.+.+.++..+++... + +..+++++++++++.+.|++.+.
T Consensus 262 ~G~~--~~~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~------~--~~~~~~~~~~~~~l~~~l~~~~~ 326 (395)
T 1vef_A 262 LGVA--VMR-----EEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE------R--TRLWERAAELGPWFMEKLRAIPS 326 (395)
T ss_dssp CEEE--EEE-----HHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH------H--HTTHHHHHHHHHHHHHHHHTSCC
T ss_pred eEEE--Eeh-----HHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHH------h--CCHHHHHHHHHHHHHHHHHHhhc
Confidence 9999 566 3355545432223344677788887777765331 1 34667888899999999988763
Q ss_pred CCCcccccCCceeEEecCC---CHHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHHHHHHH
Q 015435 342 PGDWSHIIKQIGMFTFTGL---NSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~~~l 403 (407)
+. +....+ .+.+.|+.+ ..+....+++++||.+.+++ ||+++. .+++++++++++|++++
T Consensus 327 ~~-~~~~~~-~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 327 PK-IREVRG-MGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp TT-EEEEEE-ETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred Cc-eEEEEE-EEEEEEEEEcChHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 10 111223 344555544 33445555537899999875 887652 47899999999999876
No 106
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.96 E-value=5.1e-29 Score=237.18 Aligned_cols=296 Identities=16% Similarity=0.137 Sum_probs=204.6
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC--hHHHHhhc
Q 015435 70 EYLPIVGLVDFNKLSAKLILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN--HPKVFTLA 146 (407)
Q Consensus 70 ~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~--~~~~~~~~ 146 (407)
.|++. ..++++++++++....+ .+++ ++++ |+|+++++.+++.. .+.+||+|++++|+|.+ +...++..
T Consensus 60 ~~~~~--~~~~~~~~~~~la~~~g--~~~~~~v~~--t~g~t~al~~~~~~--~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 131 (393)
T 1vjo_A 60 HLDPA--FLALMDEIQSLLRYVWQ--TENPLTIAV--SGTGTAAMEATIAN--AVEPGDVVLIGVAGYFGNRLVDMAGRY 131 (393)
T ss_dssp TTSHH--HHHHHHHHHHHHHHHHT--CCCSCEEEE--SSCHHHHHHHHHHH--HCCTTCEEEEEESSHHHHHHHHHHHHT
T ss_pred ccCHH--HHHHHHHHHHHHHHHhC--CCCCcEEEE--eCchHHHHHHHHHh--ccCCCCEEEEEcCChhHHHHHHHHHHc
Confidence 46432 33455555544422112 1346 8999 99999999999533 37799999999999998 88888999
Q ss_pred CceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 147 GLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 147 G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
|.+++.++.+ .++.+|++++++.+.+. +++++++ ++|+||||.+.+ +++|+++|+++|+++|+|++|. +...
T Consensus 132 g~~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~-~g~~ 203 (393)
T 1vjo_A 132 GADVRTISKP--WGEVFSLEELRTALETH-RPAILAL-VHAETSTGARQP---LEGVGELCREFGTLLLVDTVTS-LGGV 203 (393)
T ss_dssp TCEEEEEECC--TTCCCCHHHHHHHHHHH-CCSEEEE-ESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTT-TTTS
T ss_pred CCceEEEecC--CCCCCCHHHHHHHHhhC-CceEEEE-eccCCCcceecc---HHHHHHHHHHcCCEEEEECCcc-ccCc
Confidence 9999999983 35679999999999831 5677766 899999999886 7888888999999999999998 3321
Q ss_pred CCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHH---Hhhh------------hhcccC
Q 015435 227 SLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQ---LKLV------------IRPMYS 291 (407)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~---~~~~------------~~~~~~ 291 (407)
+. + + ...+..+++.|+||.++.+| |+||+ +++ +++.+.+... +... ......
T Consensus 204 ~~--~------~-~~~~~di~~~s~sK~l~~~~-~~G~l--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
T 1vjo_A 204 PI--F------L-DAWGVDLAYSCSQKGLGCSP-GASPF--TMS-SRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYH 270 (393)
T ss_dssp CC--C------T-TTTTCSEEECCSSSTTCSCS-SCEEE--EEC-HHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCC
T ss_pred CC--c------c-cccCccEEEEcCcccccCCC-ceEEE--EEC-HHHHHHHhccCCCCCceecCcHhhhhhhccCCCCC
Confidence 11 1 1 12345788999999998787 99999 565 3333332210 0000 001122
Q ss_pred -CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCc---eeEEec----CCCHH
Q 015435 292 -SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQI---GMFTFT----GLNSE 363 (407)
Q Consensus 292 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~----~~~~~ 363 (407)
+++.+.+.++..+++... ...+++.+++++++++++.+.|++.+ +.+..+.+ +.+.++ +.+.+
T Consensus 271 g~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (393)
T 1vjo_A 271 HTAPINLYYALREALRLIA-----QEGLANCWQRHQKNVEYLWERLEDIG----LSLHVEKEYRLPTLTTVCIPDGVDGK 341 (393)
T ss_dssp SCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTT----CCBSSCGGGBCSSEEEEECCTTCCHH
T ss_pred CCCCHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHHHHHHHHHHHcC----CcccCCccccCCcEEEEEcCCCCCHH
Confidence 667778888777775321 12367888999999999999999876 55555543 123332 34555
Q ss_pred HHH-HhHhhccEEEcCCC--------eEEe-cC-CCCCChhHHHHHHHHHH
Q 015435 364 QVA-FMTKEYHIYMTSDG--------RISM-AG-LSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 364 ~~~-~~l~~~gi~~~~gg--------Ris~-~~-~~~e~i~~~~~~l~~~l 403 (407)
.+. .+++++||.+.+|. ||++ +. .+++++++++++|++++
T Consensus 342 ~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 342 AVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp HHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 554 45454599998752 9994 32 24557999999999876
No 107
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.96 E-value=1.6e-28 Score=234.02 Aligned_cols=331 Identities=14% Similarity=0.068 Sum_probs=214.0
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccC--CCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEY--LPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ 105 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~ 105 (407)
..+++++||+.|.+..+.| ..++.+++++.+++. . ..+.| .+.....++++.+++++ + .+++++
T Consensus 33 ~~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~--~-~~~~~~~~~~~~~~~l~~~la~~~-~-------~~~v~~-- 98 (395)
T 3nx3_A 33 DKAKKYLDFSSGIGVCALG-YNHAKFNAKIKAQVD--K-LLHTSNLYYNENIAAAAKNLAKAS-A-------LERVFF-- 98 (395)
T ss_dssp TTCCEEEESSHHHHTCTTC-BSCHHHHHHHHHHHT--T-CSCCCTTSBCHHHHHHHHHHHHHH-T-------CSEEEE--
T ss_pred CCCCEEEECCCcHHhccCC-CCCHHHHHHHHHHHH--h-ccccccccCCHHHHHHHHHHHHhc-C-------CCeEEE--
Confidence 3568999999997655566 556777777777775 2 12212 12334556666666665 3 278999
Q ss_pred cCCcccHHHHHHHHHHhh-----cCCCeEEecCCCCCChHHHHhhcC-------------ceeeEEEeecCCCCCcChhh
Q 015435 106 CLSGTGSLRVGAEFLARH-----YHQLTIYIPQPTWGNHPKVFTLAG-------------LSVKTYRYYDPATRGLNFQG 167 (407)
Q Consensus 106 t~g~t~a~~~~~~~~~~~-----~~gd~Vi~~~p~y~~~~~~~~~~G-------------~~~~~v~~~~~~~~~~d~~~ 167 (407)
|+||+++++.+++++... .++|.|++++|+|+++.......+ .++..++. .|+++
T Consensus 99 ~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~ 171 (395)
T 3nx3_A 99 TNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISS 171 (395)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHH
T ss_pred eCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHH
Confidence 999999999997665444 467999999999988765444332 23333432 27889
Q ss_pred HHHHHHcCCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435 168 LLEDLRAAPSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246 (407)
Q Consensus 168 l~~~i~~~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i 246 (407)
+++++. ++++++++ .+++|++|.+ ++++++++|+++|++||++||+||+|.+|+..+. ..... ..+...
T Consensus 172 l~~~l~--~~~~~v~~-~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~---~~~~~----~~~~~~ 241 (395)
T 3nx3_A 172 VEKLVN--EKTCAIIL-ESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK---FFAYE----HAQILP 241 (395)
T ss_dssp HHTTCC--TTEEEEEE-ESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGG----GGTCCC
T ss_pred HHHhcc--CCeEEEEE-eCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc---chhHH----hcCCCC
Confidence 998886 45667666 4456666665 7899999999999999999999999998876532 11111 111122
Q ss_pred EEEecCccccccCCCcceeEEeecChhhHHHH-HHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 015435 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRV-ESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRI 325 (407)
Q Consensus 247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 325 (407)
-+.++||.++ .|+|+||+ +++ +.+ .+.+.......+++.+.+++.++.++++.... + +..++.++..
T Consensus 242 d~~t~sK~~~-~G~~~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~-~---~~~~~~~~~~ 309 (395)
T 3nx3_A 242 DIMTSAKALG-CGLSVGAF--VIN-----QKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE-E---KILENVNKLT 309 (395)
T ss_dssp SEEEECGGGT-TTSCCEEE--EEC-----HHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH-T---THHHHHHHHH
T ss_pred CEEEeccccc-CCCceEEE--EEc-----hhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh-h---HHHHHHHHHH
Confidence 2447899998 49999999 566 444 55554443334557788888888887763210 0 1223333333
Q ss_pred HHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCCC----eEEecC-CCCCChhHHH
Q 015435 326 ISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLT 396 (407)
Q Consensus 326 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~ 396 (407)
+..++.+.+.+...+. +....+.+. +.++.+ +.+.+...|.++||.+.+++ ||+++. .+++++++++
T Consensus 310 ~~~~~~l~~~~~~~~~---~~~~~~~g~-~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l 385 (395)
T 3nx3_A 310 PYLEQSLDELINEFDF---CKKRKGLGF-MQGLSLDKSVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMS 385 (395)
T ss_dssp HHHHHHHHHHHHHCTT---EEEEEEETT-EEEEEECTTSCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC---eEEEEeEEE-EEEEEeCCcchHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHH
Confidence 3333344443333331 333344444 443322 44555555566899999875 887543 4789999999
Q ss_pred HHHHHHHHh
Q 015435 397 DAIHAAVTR 405 (407)
Q Consensus 397 ~~l~~~l~~ 405 (407)
++|++++++
T Consensus 386 ~~l~~~l~~ 394 (395)
T 3nx3_A 386 EKLRKALKS 394 (395)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999875
No 108
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.96 E-value=1.9e-28 Score=235.90 Aligned_cols=331 Identities=13% Similarity=0.032 Sum_probs=210.4
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
..++++|||+.|.+..+.| +.++.+++++.+++. ......| +.....++++.+++++ + ..+++++ |+
T Consensus 49 ~~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~--~~~~~~~-~~~~~~~la~~l~~~~-~------~~~~v~~--~~ 115 (427)
T 3fq8_A 49 VDGNRYIDYVGTWGPAICG-HAHPEVIEALKVAME--KGTSFGA-PCALENVLAEMVNDAV-P------SIEMVRF--VN 115 (427)
T ss_dssp TTSCEEEESSGGGTTCTTC-BTCHHHHHHHHHHHT--TCSCCSS-CCHHHHHHHHHHHHHS-T------TCSEEEE--ES
T ss_pred CCCCEEEECCCchhhhccC-CCCHHHHHHHHHHHH--hCCCcCC-CCHHHHHHHHHHHHhC-C------CCCEEEE--eC
Confidence 4568999999998755667 567778888877775 2222223 3333445555555554 2 2489999 99
Q ss_pred CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc-Cce-------------------eeEEEeecCCCCCcChhh
Q 015435 108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA-GLS-------------------VKTYRYYDPATRGLNFQG 167 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~-G~~-------------------~~~v~~~~~~~~~~d~~~ 167 (407)
||+++++.++++......++.|++.+|+|+++....... |.. +..++. -|+++
T Consensus 116 ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~ 188 (427)
T 3fq8_A 116 SGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-------NDLEA 188 (427)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET-------TCHHH
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC-------CCHHH
Confidence 999999999766555556689999999998765544322 211 222221 18999
Q ss_pred HHHHHHcCCCCcEEEEecCCCCCCCCCCC-HHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435 168 LLEDLRAAPSGAIVLLHACAHNPTGVDPT-LEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246 (407)
Q Consensus 168 l~~~i~~~~~~~~v~i~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i 246 (407)
+++.+.+.+++..++++++++|++|.+.+ .+.+++|+++|++||++||+||+|.+| ..+ .......+ ....+
T Consensus 189 le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~~~~-~~~~d-- 261 (427)
T 3fq8_A 189 VKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIA---YGGVQEKF-GVTPD-- 261 (427)
T ss_dssp HHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTB---TTHHHHHT-TCCCS--
T ss_pred HHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchhhHhc-CCCCC--
Confidence 99999854434444453666777777654 666999999999999999999999988 543 12222222 11112
Q ss_pred EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhh---hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLV---IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD 323 (407)
Q Consensus 247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (407)
+.|+||.++ +|+|+||+ +++ +++.+.+... ....+++++++++.++.++++... + +...+
T Consensus 262 -i~t~sK~~~-~G~~~G~~--~~~-----~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~------~--~~~~~ 324 (427)
T 3fq8_A 262 -LTTLGKIIG-GGLPVGAY--GGK-----REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLR------Q--PGTYE 324 (427)
T ss_dssp -EEEECGGGG-TTSSCEEE--EEC-----HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHT------S--TTHHH
T ss_pred -hhhhhhhhh-CCcceEEE--EEc-----HHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHH------h--cCHHH
Confidence 458899999 79999999 565 4455545432 122334668888888887775221 0 12334
Q ss_pred HHHHHHHHHHHHHHh----cCCCCCcccccCCceeEEecCC-----C------------HHHHHHhHhhccEEEcCCC--
Q 015435 324 RIISMRQQLFDALSA----RGTPGDWSHIIKQIGMFTFTGL-----N------------SEQVAFMTKEYHIYMTSDG-- 380 (407)
Q Consensus 324 ~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~-----~------------~~~~~~~l~~~gi~~~~gg-- 380 (407)
+++++++++.+.|++ .+ +....+..|.+.++.+ . ...+...|.++||.+.+++
T Consensus 325 ~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~ 400 (427)
T 3fq8_A 325 YLDQITKRLSDGLLAIAQETG----HAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFE 400 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----CCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTS
T ss_pred HHHHHHHHHHHHHHHHHHhCC----CCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCCC
Confidence 444444455444443 33 2212222333443322 1 2234444555899999987
Q ss_pred eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 381 RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 381 Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
|+++.. .+++++++++++|+++++++
T Consensus 401 r~~~~~~~t~e~i~~~l~~l~~~l~~~ 427 (427)
T 3fq8_A 401 AGFTSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp CEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CEEeeCcCCHHHHHHHHHHHHHHHHhC
Confidence 776654 47899999999999998763
No 109
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.96 E-value=1.3e-28 Score=231.67 Aligned_cols=291 Identities=16% Similarity=0.090 Sum_probs=205.5
Q ss_pred CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecC-CCCCC-hHHHHhhcCceeeE
Q 015435 75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQ-PTWGN-HPKVFTLAGLSVKT 152 (407)
Q Consensus 75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~-p~y~~-~~~~~~~~G~~~~~ 152 (407)
.+..++++.+++++ +. +.+++++++ |+|+++++.+++ ...+.+||+|++++ ++|.. +...+...|.+++.
T Consensus 37 ~~~~~l~~~la~~~-g~---~~~~~~v~~--~~g~t~a~~~~~--~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~ 108 (366)
T 1m32_A 37 GVVEQIRQQLTALA-TA---SEGYTSVLL--QGSGSYAVEAVL--GSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHA 108 (366)
T ss_dssp TTHHHHHHHHHHHH-CS---SSSEEEEEE--ESCHHHHHHHHH--HHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHh-CC---CCcCcEEEE--ecChHHHHHHHH--HHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEE
Confidence 67899999999998 42 112357999 999999999995 33367899988776 55553 56677888999999
Q ss_pred EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435 153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA 232 (407)
Q Consensus 153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~ 232 (407)
++.. ..+.+|++++++.+.+.++++++++ ++|+||||.+++ +++|+++|++||+++|+|++|...... . +
T Consensus 109 v~~~--~~~~~d~~~l~~~l~~~~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~--~- 178 (366)
T 1m32_A 109 YDCG--EVARPDVQAIDAILNADPTISHIAM-VHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGIP-M--D- 178 (366)
T ss_dssp EECC--TTSCCCHHHHHHHHHHCTTCCEEEE-ESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTSC-C--C-
T ss_pred EeCC--CCCCCCHHHHHHHHhcCCCeEEEEE-ecccCCcceecC---HHHHHHHHHHcCCEEEEECCccccCcC-c--c-
Confidence 9983 3466999999999985434566666 889999999987 778888999999999999998744321 1 1
Q ss_pred HHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh------------------hcccCCCC
Q 015435 233 QSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI------------------RPMYSSPP 294 (407)
Q Consensus 233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~------------------~~~~~~~~ 294 (407)
+ ...+..++++|+||.++ .+.++||+ +++ +.+.+.+.... .....+++
T Consensus 179 --~----~~~~~di~~~s~~K~~~-~~~g~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (366)
T 1m32_A 179 --I----AALHIDYLISSANKCIQ-GVPGFAFV--IAR-----EQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSP 244 (366)
T ss_dssp --T----TTTTCSEEEEESSSTTC-CCSSEEEE--EEE-----HHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCC
T ss_pred --c----cccCccEEEecCccccc-CCCceEEE--EEC-----HHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCC
Confidence 1 11235688999999774 23456998 566 33433332210 00123566
Q ss_pred hhHHHHHHHHhcChhhHHhHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC---CceeEEecC------CCHH
Q 015435 295 IHGASIVATILKDSTMYKEWTLE--LKAMADRIISMRQQLFDALSARGTPGDWSHIIK---QIGMFTFTG------LNSE 363 (407)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~------~~~~ 363 (407)
..++.++..+++.. .+. +++.+++++++++++.+.|++.+ +.+..+ .++++.|+. .+.+
T Consensus 245 ~~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (366)
T 1m32_A 245 THTVLAFAQALKEL------AKEGGVAARHQRYQQNQRSLVAGMRALG----FNTLLDDELHSPIITAFYSPEDPQYRFS 314 (366)
T ss_dssp HHHHHHHHHHHHHH------HHHTHHHHHHHHHHHHHHHHHHHHHHTT----CCBSSCGGGBCSSEEEEECCCCTTCCHH
T ss_pred HHHHHHHHHHHHHH------HHccCHhHHHHHHHHHHHHHHHHHHHCC----CeeccCchhcCceEEEEEcCccCCCCHH
Confidence 66666666666532 132 56788889999999999999875 444433 356555553 3455
Q ss_pred HHHHhHhhccEEEcCCC-------eEEecC-CCCCChhHHHHHHHHHHHhhC
Q 015435 364 QVAFMTKEYHIYMTSDG-------RISMAG-LSSKTVPHLTDAIHAAVTRMG 407 (407)
Q Consensus 364 ~~~~~l~~~gi~~~~gg-------Ris~~~-~~~e~i~~~~~~l~~~l~~~~ 407 (407)
.+.+.|.++||.+.++. ||+++. .+++++++++++|+++++++|
T Consensus 315 ~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 366 (366)
T 1m32_A 315 EFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYWTK 366 (366)
T ss_dssp HHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 55555556799998762 999875 367999999999999887664
No 110
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=1.3e-28 Score=234.30 Aligned_cols=318 Identities=11% Similarity=0.077 Sum_probs=210.8
Q ss_pred cccchhHHHHHHHHhccccccccCCCCCCcHH----HHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh
Q 015435 48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVD----FNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH 123 (407)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~----l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~ 123 (407)
+.++.+++++.+.+. . ....+....+..+ +++.+++++ + .++++|++ |+|+++++.+++..+...
T Consensus 41 ~~~~~v~~a~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~la~~~-~-----~~~~~i~~--~~ggt~a~~~~~~~~~~~ 109 (397)
T 3f9t_A 41 NVLPITRKIVDIFLE--T-NLGDPGLFKGTKLLEEKAVALLGSLL-N-----NKDAYGHI--VSGGTEANLMALRCIKNI 109 (397)
T ss_dssp CCCTHHHHHHHHHTT--C-CTTSGGGBHHHHHHHHHHHHHHHHHT-T-----CTTCEEEE--ESCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHh--h-cCCCcccChhHHHHHHHHHHHHHHHh-C-----CCCCCEEE--ecCcHHHHHHHHHHHHHH
Confidence 345566666655554 1 1111211123344 445555544 3 23578999 999999999996554322
Q ss_pred -----------cCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCC
Q 015435 124 -----------YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTG 192 (407)
Q Consensus 124 -----------~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG 192 (407)
.+||+|+++.|+|..+...++..|.+++.+|.+ .++.+|++++++.+.+. +++++++ ++|+||||
T Consensus 110 ~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~-~~~~v~~-~~~~nptG 185 (397)
T 3f9t_A 110 WREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIK--EDYTIDEKFVKDAVEDY-DVDGIIG-IAGTTELG 185 (397)
T ss_dssp HHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBC--TTSSBCHHHHHHHHHHS-CCCEEEE-EBSCTTTC
T ss_pred HHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeC--CCCcCCHHHHHHHHhhc-CCeEEEE-ECCCCCCC
Confidence 139999999999999999999999999999983 35779999999999832 5677776 78999999
Q ss_pred CCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHH----HH-HHcCCcEEEEEecCccccccCCCcceeEE
Q 015435 193 VDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVR----MF-VADGGECLVAQSYAKNMGLYGERVGALSI 267 (407)
Q Consensus 193 ~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~----~~-~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 267 (407)
.+.+ +++|+++|++||+++|+|++|..+...... ...... .+ ... +..+++.|++|.++ +|.|+|++
T Consensus 186 ~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~-~~~~~g~~-- 257 (397)
T 3f9t_A 186 TIDN---IEELSKIAKENNIYIHVDAAFGGLVIPFLD-DKYKKKGVNYKFDFSL-GVDSITIDPHKMGH-CPIPSGGI-- 257 (397)
T ss_dssp CBCC---HHHHHHHHHHHTCEEEEECTTGGGTGGGCC-GGGCCTTCCCCCSGGG-TCSEEECCTTTTTC-CCSSCEEE--
T ss_pred CCCC---HHHHHHHHHHhCCeEEEEccccchhhhhcc-cccccccccccccccc-cCCeEEEccccccC-CCCCceEE--
Confidence 9875 788888999999999999999876542110 000000 00 112 45688899999775 67899998
Q ss_pred eecChhhHHHHHHHHhhhhhccc--------CC---CChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015435 268 VCKTEDVASRVESQLKLVIRPMY--------SS---PPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDAL 336 (407)
Q Consensus 268 v~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 336 (407)
+++++.+.+. +........ .+ .+..++.++...+.. ...++..++++++++++.+.|
T Consensus 258 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~~~l~~~L 325 (397)
T 3f9t_A 258 LFKDIGYKRY----LDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGR--------EGQRKIVNECMENTLYLYKKL 325 (397)
T ss_dssp EESSGGGGGG----TCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCHHHHHh----hccCCccccCCCccccccccccchHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 6776553332 211111100 11 133444444444421 345677788889999999999
Q ss_pred HhcCCCCCcccc-cCCceeEEecCCCHHHHHHhHhhccEEEcCCC-----eEEecC-CCCCChhHHHHHHHHHHH
Q 015435 337 SARGTPGDWSHI-IKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDG-----RISMAG-LSSKTVPHLTDAIHAAVT 404 (407)
Q Consensus 337 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~gg-----Ris~~~-~~~e~i~~~~~~l~~~l~ 404 (407)
++.+ +... .+.++++.+...+.+.+.+.|.++||.+.++. ||+++. .+++++++++++|+++++
T Consensus 326 ~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 326 KENN----FKPVIEPILNIVAIEDEDYKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp HHTT----CCBSSCCSSSEEEEECTTHHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred HHCC----CEEEcCCCccEEEEEeCCHHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 9886 5533 44555544433345555555566799998874 999874 478999999999998865
No 111
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.96 E-value=3.5e-28 Score=236.04 Aligned_cols=352 Identities=12% Similarity=-0.004 Sum_probs=214.2
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
..++++|||+.|.+..+.| +.++.+++++.+++. .. ...|....+..+.++++++++....+ ...++|++ |+
T Consensus 47 ~~g~~ylD~~~~~~~~~lG-~~~p~v~~A~~~~~~--~~-~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~ 118 (459)
T 4a6r_A 47 SEGNKIIDGMAGLWCVNVG-YGRKDFAEAARRQME--EL-PFYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFY--TN 118 (459)
T ss_dssp TTCCEEEETTHHHHTCTTC-BCCHHHHHHHHHHHH--HC-SCCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEE--ES
T ss_pred CCCCEEEECCCchhcccCC-CCCHHHHHHHHHHHH--hc-cccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eC
Confidence 4568999999997766677 567788888888875 21 21233333334455555555522211 23478999 99
Q ss_pred CcccHHHHHHHHHHhh------cCCCeEEecCCCCCChHHHHhhcCc-------------eeeEEEeec--C-CCCCcC-
Q 015435 108 SGTGSLRVGAEFLARH------YHQLTIYIPQPTWGNHPKVFTLAGL-------------SVKTYRYYD--P-ATRGLN- 164 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~------~~gd~Vi~~~p~y~~~~~~~~~~G~-------------~~~~v~~~~--~-~~~~~d- 164 (407)
||++|++.+++++... .+++.|++.+|+|+++.......+. .+..++... . ..+ .|
T Consensus 119 ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~ 197 (459)
T 4a6r_A 119 SGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTP 197 (459)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCH
T ss_pred chHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCH
Confidence 9999999997666433 2578999999999988765544322 223333210 0 111 34
Q ss_pred -------hhhHHHHHHcC-CCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHH
Q 015435 165 -------FQGLLEDLRAA-PSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSV 235 (407)
Q Consensus 165 -------~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~ 235 (407)
++++++.+.+. +.+..++++.+.+|++|. +++++++++|+++|++||++||+||+|.+|+..+. ....
T Consensus 198 ~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~---~~~~ 274 (459)
T 4a6r_A 198 DEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE---WFGH 274 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc---cchH
Confidence 78888888632 233344442444445555 46999999999999999999999999999877642 2222
Q ss_pred HHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHH
Q 015435 236 RMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWT 315 (407)
Q Consensus 236 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 315 (407)
..+ ....++ .+|||.++.+|+|+|++ +++ +++.+.+... .......+++.+++++.++.++|+...- .
T Consensus 275 ~~~-~~~pdi---~t~sK~l~gg~~~lg~v--~~~-~~i~~~~~~~-~~~~~~~t~~~~~~~~aaa~aal~~~~~----~ 342 (459)
T 4a6r_A 275 QHF-GFQPDL---FTAAKGLSSGYLPIGAV--FVG-KRVAEGLIAG-GDFNHGFTYSGHPVCAAVAHANVAALRD----E 342 (459)
T ss_dssp HHH-TCCCSE---EEECGGGGTTSSCCEEE--EEC-HHHHHHHHHH-CTTHHHHHHCSCHHHHHHHHHHHHHHHH----T
T ss_pred hhc-CCCCCe---eehhhhhcCCCCCccce--eeC-HHHHHHhhcC-CCcccCCCCCCCHHHHHHHHHHHHHHhc----c
Confidence 222 222233 35899998555999999 464 5444443321 1223334557888999998888863310 0
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec--CC-C-----------HHHHHHhHhhccEEEcCCC
Q 015435 316 LELKAMA-DRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT--GL-N-----------SEQVAFMTKEYHIYMTSDG 380 (407)
Q Consensus 316 ~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~-----------~~~~~~~l~~~gi~~~~gg 380 (407)
+..++.+ +.....++.+.+.|...+. +....+.|.++.+. .- . ...+...+.++||.+.++|
T Consensus 343 ~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g 419 (459)
T 4a6r_A 343 GIVQRVKDDIGPYMQKRWRETFSRFEH---VDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG 419 (459)
T ss_dssp CHHHHHHHTHHHHHHHHHHHHHTTCTT---EEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCC---eEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC
Confidence 1223333 3333333344344433332 44455555554432 10 0 3334444455799999976
Q ss_pred ---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 381 ---RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 381 ---Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
||++.. .+++++++++++|+++++++
T Consensus 420 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 420 DHIVSAPPLVMTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 777432 48899999999999998653
No 112
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.96 E-value=1.3e-28 Score=238.50 Aligned_cols=337 Identities=11% Similarity=0.058 Sum_probs=212.9
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCC----cHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVG----LVDFNKLSAKLILGADSPAIKDNRVTT 103 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g----~~~l~~~~a~~~~~~~~~~~~~~~i~~ 103 (407)
..++++|||+.|.+..+.| +.++.+++++.+++. .. ..|....+ ..++++.+++.+ +.. ..+++++
T Consensus 61 ~~G~~ylD~~~~~~~~~lG-h~~p~v~~A~~~~~~--~~--~~~~~~~~~~~~~~~la~~l~~~~-~~~----~~~~v~~ 130 (453)
T 4ffc_A 61 ADGNSFIDLGAGIAVTTVG-ASHPAVAAAIADQAT--HF--THTCFMVTPYEQYVQVAELLNALT-PGD----HDKRTAL 130 (453)
T ss_dssp TTSCEEEESSHHHHTCTTC-TTCHHHHHHHHHHHH--HC--SCCTTTTSCCHHHHHHHHHHHHHS-SCS----SCEEEEE
T ss_pred CCCCEEEEcCCCcccCcCC-CCCHHHHHHHHHHHH--hc--cccccCcCCCHHHHHHHHHHHHhC-CCC----CCcEEEE
Confidence 3568899999997655667 567788888888875 21 22333233 344555555544 211 1378999
Q ss_pred eecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCc--------------eeeEEEeecC--CCCCcC---
Q 015435 104 VQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL--------------SVKTYRYYDP--ATRGLN--- 164 (407)
Q Consensus 104 ~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~--------------~~~~v~~~~~--~~~~~d--- 164 (407)
|+||++|++.++++......++.|++.+++|+++.......+. .+..++...+ +.++.+
T Consensus 131 --~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (453)
T 4ffc_A 131 --FNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEE 208 (453)
T ss_dssp --ESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHH
T ss_pred --eCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHH
Confidence 9999999999976654444668999999999987665543322 3445554211 112333
Q ss_pred -----hhhHHHHHHcCCCCcEEEEecCCCCCCC--CCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHH
Q 015435 165 -----FQGLLEDLRAAPSGAIVLLHACAHNPTG--VDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM 237 (407)
Q Consensus 165 -----~~~l~~~i~~~~~~~~v~i~~~p~NPtG--~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~ 237 (407)
++.+++.+. +.+.++++ +.|.||+| ...+.+.+++|+++|++||++||+||+|.+|+..+. ......
T Consensus 209 ~~~~~~~~l~~~i~--~~~~aavi-~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~a~~~ 282 (453)
T 4ffc_A 209 AARRAISRIETQIG--AQSLAAII-IEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA---WFASEH 282 (453)
T ss_dssp HHHHHHHHHHHHTC--GGGEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHH
T ss_pred HHHHHHHHHHHhcC--CCCEEEEE-EcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc---cchhhh
Confidence 234444432 33445555 67788876 345788899999999999999999999999876542 122222
Q ss_pred HHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHH
Q 015435 238 FVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLE 317 (407)
Q Consensus 238 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 317 (407)
+ .. ..-+.+|||.++. |+|+||+ +++ +++.+.+.......+++.+++++.++.++++... +
T Consensus 283 ~-~~---~pdi~t~sK~~~~-G~~~G~~--~~~-----~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------~- 343 (453)
T 4ffc_A 283 E-GI---VPDIVTMAKGIAG-GMPLSAV--TGR-----AELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMR------E- 343 (453)
T ss_dssp H-TC---CCSEEEECGGGGT-TSSCEEE--EEE-----HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHH------H-
T ss_pred c-CC---CcchHhhhhhhcC-CcCeEEE--EEC-----HHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhh------h-
Confidence 2 11 1124468999985 9999999 566 5566656555455566888999998888876331 1
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hcCCCCCcccccCCceeEEecCC--------C---HHHHHHhHhhccEEEcCCC--
Q 015435 318 LKAMADRIISMRQQLFDALS----ARGTPGDWSHIIKQIGMFTFTGL--------N---SEQVAFMTKEYHIYMTSDG-- 380 (407)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~l~~~gi~~~~gg-- 380 (407)
+...++++++.+++.+.|+ ..+. +....+.|. |.++.+ + ...+...+.++||.+.|++
T Consensus 344 -~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 418 (453)
T 4ffc_A 344 -LDLPARARAIEASVTSRLSALAEEVDI---IGEVRGRGA-MLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTF 418 (453)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHCSS---EEEEEEETT-EEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECTT
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHhhCCC---eEEEEeece-EEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCCC
Confidence 1233344444444444444 3332 333344444 444322 1 2334445556899998864
Q ss_pred ----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 381 ----RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 381 ----Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
||+++. .+++++++++++|+++++++
T Consensus 419 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 449 (453)
T 4ffc_A 419 GNVIRLLPPLVIGDDLLDEGITALSDIIRAK 449 (453)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 776553 47899999999999998764
No 113
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.96 E-value=3e-29 Score=238.39 Aligned_cols=328 Identities=14% Similarity=0.074 Sum_probs=222.3
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhcccc--ccc---cCCC-CCCcHHHHHHHHHHHhCCCCCCCCCCceEEe
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQS--RVK---EYLP-IVGLVDFNKLSAKLILGADSPAIKDNRVTTV 104 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~y~~-~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~ 104 (407)
++.++|..+. .+ +.|+.+.+++.+.+. ... ... .|.. ..+..++++.+++++ +. ++++|++
T Consensus 15 ~~~i~l~~~~----~~-~~~~~v~~a~~~~~~-~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~-g~-----~~~~v~~- 81 (390)
T 1elu_A 15 ANKTYFNFGG----QG-ILPTVALEAITAMYG-YLQENGPFSIAANQHIQQLIAQLRQALAETF-NV-----DPNTITI- 81 (390)
T ss_dssp TTSEECCTTT----CC-CCCHHHHHHHHHHHH-HHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT-TS-----CGGGEEE-
T ss_pred CCeEEecCCc----cC-CCCHHHHHHHHHHHH-HHhccCCcchhhHHHHHHHHHHHHHHHHHHc-CC-----CHHHEEE-
Confidence 3567777664 24 556567777666664 111 011 3433 367899999999988 42 3468999
Q ss_pred ecCCcccHHHHHHHHHHh-hcCCCeEEecCCCCCChHHH----HhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCc
Q 015435 105 QCLSGTGSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKV----FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGA 179 (407)
Q Consensus 105 ~t~g~t~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 179 (407)
|+|+++++.+++ ... +.+||+|+++.|+|..+... .+..|.+++.++.+.+.++.+|++++++.+. ++++
T Consensus 82 -~~g~t~a~~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~--~~~~ 156 (390)
T 1elu_A 82 -TDNVTTGCDIVL--WGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG--PKTR 156 (390)
T ss_dssp -ESSHHHHHHHHH--HHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC--TTEE
T ss_pred -eCChHHHHHHHH--hCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC--CCce
Confidence 999999999994 333 57899999999999987654 4567999999988422467899999999886 4566
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHH----HcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435 180 IVLLHACAHNPTGVDPTLEQWEQIRQLMR----SKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM 255 (407)
Q Consensus 180 ~v~i~~~p~NPtG~~~~~~~l~~i~~~~~----~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 255 (407)
++++ ++|+||||.+++ +++|+++|+ +||+++|+|++|..... +. + + ......+++.|+||.+
T Consensus 157 ~v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~~-~~--~------~-~~~~~d~~~~s~~K~~ 222 (390)
T 1elu_A 157 LVIL-SHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSL-PL--D------F-SRLEVDYYAFTGHKWF 222 (390)
T ss_dssp EEEE-ESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTTB-CC--C------T-TTSCCSEEEEESSSTT
T ss_pred EEEE-eccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCCc-CC--C------h-hhcCCCEEEccccccc
Confidence 6665 999999999998 778888899 99999999999974321 11 1 1 1224568899999943
Q ss_pred cccCCCcceeEEeecChhhHHHHHHHHhh------------------hhhcccCCCChhHHHHHHHHhcChhhHHhHHHH
Q 015435 256 GLYGERVGALSIVCKTEDVASRVESQLKL------------------VIRPMYSSPPIHGASIVATILKDSTMYKEWTLE 317 (407)
Q Consensus 256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 317 (407)
+ +|.++||+ +++ +++.+.+...... .......+++...+.++..+++... + ..+
T Consensus 223 ~-~~~g~G~~--~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~--~--~~~ 294 (390)
T 1elu_A 223 A-GPAGVGGL--YIH-GDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQ--R--QGT 294 (390)
T ss_dssp C-CCTTCEEE--EEC-TTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHH--H--HCC
T ss_pred c-CCCceEEE--EEC-HHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHH--H--cCC
Confidence 3 56779999 565 3333322111000 0111223456566665555554211 0 012
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcccc---cCCceeEEec---CCCHHHHHHhHhhccEEEcCCC-----eEEecC
Q 015435 318 LKAMADRIISMRQQLFDALSARGTPGDWSHI---IKQIGMFTFT---GLNSEQVAFMTKEYHIYMTSDG-----RISMAG 386 (407)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~~gg-----Ris~~~ 386 (407)
+++.+++++++++++.+.|++.+. +.+. .+.++++.|. +.+.+.+.+.|.++||.+.+++ ||+++.
T Consensus 295 ~~~~~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~ 371 (390)
T 1elu_A 295 AEERYQAICQRSEFLWRGLNQLPH---VHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHY 371 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTT---EEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---cEEecCccccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecCCCCeEEEeccc
Confidence 677888999999999999998731 6655 3457776663 2355555555567899998863 999842
Q ss_pred -CCCCChhHHHHHHHH
Q 015435 387 -LSSKTVPHLTDAIHA 401 (407)
Q Consensus 387 -~~~e~i~~~~~~l~~ 401 (407)
.+++++++++++|++
T Consensus 372 ~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 372 ITDEEEINHLLARLAD 387 (390)
T ss_dssp TCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 578999999998865
No 114
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=9.7e-29 Score=237.27 Aligned_cols=332 Identities=11% Similarity=0.065 Sum_probs=215.9
Q ss_pred CCCCeeeeeeeeeecCCCccc-cchhHHHHHHHHhcccccc--ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435 29 TSPVKLNLGVGAYRTEEGKPL-VLNVVRKAEQLLVNDQSRV--KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ 105 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~ 105 (407)
.+..++|++.|.+..+.| +. ++.+++++.+++. ..... ..| +.....++++.+++++ +.. . +++|++
T Consensus 40 ~g~~~lD~~~~~~~~~lG-~~~~p~v~~a~~~~~~-~~~~~~~~~~-~~~~~~~l~~~la~~~-~~~---~-~~~v~~-- 109 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLG-WPSHPEVIKIGIEQMQ-KLAHAAANDF-YNIPQLELAKKLVTYS-PGN---F-QKKVFF-- 109 (419)
T ss_dssp TSCEEEESSGGGGTTTTC-BSCCHHHHHHHHHHHT-TSCCCSCSCS-CCHHHHHHHHHHHHHS-SCS---S-CEEEEE--
T ss_pred CCCEEEEccCChhhhccC-CCCCHHHHHHHHHHHh-hCcccccccc-CCHHHHHHHHHHHHhC-CCC---c-CCEEEE--
Confidence 457899999998643455 44 6777777777775 21110 113 2233456677777765 321 1 479999
Q ss_pred cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hc-------------CceeeEEEeecCCC--CC-------
Q 015435 106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LA-------------GLSVKTYRYYDPAT--RG------- 162 (407)
Q Consensus 106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~-------------G~~~~~v~~~~~~~--~~------- 162 (407)
|+||+++++++++++... .||+|++++|+|+++..... .. +.+++.+|.++... ++
T Consensus 110 ~~gg~ea~~~ai~~~~~~-~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~ 188 (419)
T 2eo5_A 110 SNSGTEAIEASIKVVKNT-GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENP 188 (419)
T ss_dssp ESSHHHHHHHHHHHHHTT-SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCH
T ss_pred eCchHHHHHHHHHHHHHh-hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccc
Confidence 999999999996544322 38999999999986554322 21 12566776632111 12
Q ss_pred -----cChhhHH-HHHHcCC--CCcEEEEecCC-CCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435 163 -----LNFQGLL-EDLRAAP--SGAIVLLHACA-HNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA 232 (407)
Q Consensus 163 -----~d~~~l~-~~i~~~~--~~~~v~i~~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~ 232 (407)
+|+++++ +.+.+.. .+..+++ ++| +||||. +++.+++++|+++|++||++||+||+|.+|+..+. .
T Consensus 189 ~~~~~~~~~~l~~~~i~~~~~~~~~~~vi-~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~---~ 264 (419)
T 2eo5_A 189 SELVNRVIEFIEDYIFVNLVPPEEVAGIF-FEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK---L 264 (419)
T ss_dssp HHHHHHHHHHHHHTHHHHTCCGGGEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---S
T ss_pred hhhHHHHHHHHHHHHHhhccCCCCEEEEE-EeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc---h
Confidence 4688998 8887321 2333444 455 467896 67899999999999999999999999998876542 1
Q ss_pred HHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhH
Q 015435 233 QSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMY 311 (407)
Q Consensus 233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (407)
.....+ ....+++ ||||.++ +| +|+||+ +++ +++. .+ ......+.+.+.+++.++.++++...
T Consensus 265 ~~~~~~-~~~~d~~---t~sK~~~-~G~~riG~~--~~~-~~~~-----~~-~~~~~~t~~~n~~~~~aa~aal~~~~-- 328 (419)
T 2eo5_A 265 FAIENF-NTVPDVI---TLAKALG-GGIMPIGAT--IFR-KDLD-----FK-PGMHSNTFGGNALACAIGSKVIDIVK-- 328 (419)
T ss_dssp SGGGGG-TCCCSEE---EECGGGG-TTTSCCEEE--EEE-GGGC-----CC-------CCCCCHHHHHHHHHHHHHHH--
T ss_pred hhHHhc-CCCCCEE---Eeccccc-CCccceEEE--EEc-hHhh-----cC-CcccCCCCCCCHHHHHHHHHHHHHHH--
Confidence 111111 1123332 7999999 59 999999 565 3332 23 11223455778889998888886321
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-C----HHHHHHhHhhccEEEcCCC----eE
Q 015435 312 KEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-N----SEQVAFMTKEYHIYMTSDG----RI 382 (407)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~l~~~gi~~~~gg----Ri 382 (407)
+.+++++++++++.+.|+++ +....+.+. |.++.+ . .+ +...|.++||.+.+++ ||
T Consensus 329 --------~~~~~~~~~~~~l~~~L~~~-----~~~~~~~g~-~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~~~~~lRi 393 (419)
T 2eo5_A 329 --------DLLPHVNEIGKIFAEELQGL-----ADDVRGIGL-AWGLEYNEKKVRDR-IIGESFKRGLLLLPAGRSAIRV 393 (419)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTS-----SSEEEEETT-EEEEECSCHHHHHH-HHHHHHHTTEECEEETTTEEEE
T ss_pred --------HHHHHHHHHHHHHHHHHHHh-----hhheEeeeE-EEEEEEecCccHHH-HHHHHHHCCCEEecCCCCEEEE
Confidence 26788889999999999765 122344444 445555 2 23 4444446899999864 88
Q ss_pred EecC-CCCCChhHHHHHHHHHHHhh
Q 015435 383 SMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 383 s~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
+++. .+++++++++++|+++++++
T Consensus 394 s~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 394 IPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 6652 48899999999999998765
No 115
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.96 E-value=3.2e-28 Score=231.52 Aligned_cols=292 Identities=13% Similarity=0.054 Sum_probs=200.7
Q ss_pred CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCCh--HHHHhhcCceeeE
Q 015435 75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNH--PKVFTLAGLSVKT 152 (407)
Q Consensus 75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~--~~~~~~~G~~~~~ 152 (407)
.+..++++.+++++ +. +++++++ |+|+++++.+++..+ +.+||+|++++|+|+++ ...++..|.+++.
T Consensus 42 ~~~~~l~~~la~~~-g~-----~~~~v~~--t~g~t~a~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~ 111 (392)
T 2z9v_A 42 LLYEKVVDKAQKAM-RL-----SNKPVIL--HGEPVLGLEAAAASL--ISPDDVVLNLASGVYGKGFGYWAKRYSPHLLE 111 (392)
T ss_dssp HHHHHHHHHHHHHT-TC-----SSCCEEE--SSCTHHHHHHHHHHH--CCTTCCEEEEESSHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHHHHHHHHh-CC-----CCCEEEE--eCCchHHHHHHHHHh--cCCCCEEEEecCCcccHHHHHHHHHcCCceEE
Confidence 45788999999988 43 2479999 999999999995443 78999999999999765 3444568999999
Q ss_pred EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435 153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA 232 (407)
Q Consensus 153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~ 232 (407)
++++ .++.+|++++++.+.+.++++++++ ++|+||||.+++ +++|+++|++||+++|+|++|...... . +
T Consensus 112 v~~~--~~~~~d~~~l~~~l~~~~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~-~--~- 181 (392)
T 2z9v_A 112 IEVP--YNEAIDPQAVADMLKAHPEITVVSV-CHHDTPSGTINP---IDAIGALVSAHGAYLIVDAVSSFGGMK-T--H- 181 (392)
T ss_dssp EECC--TTSCCCHHHHHHHHHHCTTCCEEEE-ESEEGGGTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBS-C--C-
T ss_pred eeCC--CCCCCCHHHHHHHHhcCCCCcEEEE-eccCCCCceecc---HHHHHHHHHHcCCeEEEEcccccCCcc-c--c-
Confidence 9983 3456999999999964345677666 899999999887 678888899999999999998632211 1 1
Q ss_pred HHHHHHHHcCCcEEEEEecCccc-cccCCCcceeEEeecChhhHHHHHHHH--------------hh--hhhcccCCCCh
Q 015435 233 QSVRMFVADGGECLVAQSYAKNM-GLYGERVGALSIVCKTEDVASRVESQL--------------KL--VIRPMYSSPPI 295 (407)
Q Consensus 233 ~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~v~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~~ 295 (407)
+ ...+..++++|+||.+ +.+| +||+ +++ +++.+.+.... .. .......+++.
T Consensus 182 --~----~~~~~d~~~~s~sK~~~~~~g--~G~l--~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (392)
T 2z9v_A 182 --P----EDCKADIYVTGPNKCLGAPPG--LTMM--GVS-ERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSV 250 (392)
T ss_dssp --G----GGGTCSEEEECSSSTTCCCSC--CEEE--EEC-HHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCH
T ss_pred --c----ccccceEEEecCcccccCCCc--eeEE--EEC-HHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCH
Confidence 1 1123468889999965 4445 5898 565 44333332100 00 00111224455
Q ss_pred hHHHHHHHHhcChhhHHhHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-CC---ceeEEec----CCCHHHHH
Q 015435 296 HGASIVATILKDSTMYKEWTLE-LKAMADRIISMRQQLFDALSARGTPGDWSHII-KQ---IGMFTFT----GLNSEQVA 366 (407)
Q Consensus 296 ~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~---~~~~~~~----~~~~~~~~ 366 (407)
..+.++..+++.. .+. +++.+++++++++++.+.|++.+ +.+.. +. .+.+.++ +.+.+.+.
T Consensus 251 ~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 320 (392)
T 2z9v_A 251 SEINGLDVALDLY------LNEGPEAVWARHALTAKAMRAGVTAMG----LSVWAASDSIASPTTTAVRTPDGVDEKALR 320 (392)
T ss_dssp HHHHHHHHHHHHH------HHHCHHHHHHHHHHHHHHHHHHHHHTT----CCBSSSSGGGBCTTEEEEECCTTCCHHHHH
T ss_pred HHHHHHHHHHHHH------HhccHHHHHHHHHHHHHHHHHHHHHcC----CeeccCCccccCCceEEEECCCCCCHHHHH
Confidence 5555555555422 233 66788889999999999998875 45444 21 2334433 34555555
Q ss_pred H-hHhhccEEEcCCC--------eEEe-c-CCCCCChhHHHHHHHHHHHhhC
Q 015435 367 F-MTKEYHIYMTSDG--------RISM-A-GLSSKTVPHLTDAIHAAVTRMG 407 (407)
Q Consensus 367 ~-~l~~~gi~~~~gg--------Ris~-~-~~~~e~i~~~~~~l~~~l~~~~ 407 (407)
+ +++++||.+.++. ||++ + ..+++++++++++|++++++++
T Consensus 321 ~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 321 QAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp HHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 4 4444599998752 9994 5 4588999999999999988653
No 116
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.96 E-value=6.1e-28 Score=234.42 Aligned_cols=353 Identities=12% Similarity=0.026 Sum_probs=218.1
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
.+++++|||+.|.+..+.| +.++.+++++.+++. .. .+.|....+..+.++++++.+..... ...++|++ |+
T Consensus 48 ~~G~~~lD~~~~~~~~~lG-~~~p~v~~A~~~~~~--~~-~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~ 119 (460)
T 3gju_A 48 NNGRKSIDAFAGLYCVNVG-YGRQKIADAIATQAK--NL-AYYHAYVGHGTEASITLAKMIIDRAP--KGMSRVYF--GL 119 (460)
T ss_dssp TTCCEEEETTHHHHTCTTC-BCCHHHHHHHHHHHH--HH-SCCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEE--ES
T ss_pred CCCCEEEECCcchhhccCC-CCCHHHHHHHHHHHH--hc-cccccccccCCHHHHHHHHHHHhhCC--CCcCEEEE--eC
Confidence 4578999999997655677 567788888887775 21 22233333334455555555522211 23478999 99
Q ss_pred CcccHHHHHHHHHHhh------cCCCeEEecCCCCCChHHHHhhcCc-------------eeeEEEeecC---CCCCcC-
Q 015435 108 SGTGSLRVGAEFLARH------YHQLTIYIPQPTWGNHPKVFTLAGL-------------SVKTYRYYDP---ATRGLN- 164 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~------~~gd~Vi~~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~---~~~~~d- 164 (407)
||++|++.+++++... .+++.|++.+|+|+++.......+. .+..++.... ...+.+
T Consensus 120 gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 199 (460)
T 3gju_A 120 SGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSE 199 (460)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCH
T ss_pred chHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccCh
Confidence 9999999997666433 3568999999999887665443322 2344443110 112233
Q ss_pred -------hhhHHHHHHcC-CCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHH
Q 015435 165 -------FQGLLEDLRAA-PSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSV 235 (407)
Q Consensus 165 -------~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~ 235 (407)
+++|++.+.+. +.+..++++.+++|++|. +++.+.+++|+++|++||++||+||+|.+|+..+. ....
T Consensus 200 ~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~---~~~~ 276 (460)
T 3gju_A 200 EQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGT---MFGS 276 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SCHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc---cchH
Confidence 57888888632 123344443556777777 67889999999999999999999999999876542 2222
Q ss_pred HHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHH---HhhhhhcccCCCChhHHHHHHHHhcChhhH
Q 015435 236 RMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQ---LKLVIRPMYSSPPIHGASIVATILKDSTMY 311 (407)
Q Consensus 236 ~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (407)
..+ ....+ +.+|||.++ .| +|+||+ +++ +++.+.+... ........+++.+++++.++.++++...-
T Consensus 277 ~~~-~~~pd---i~t~sK~l~-gG~~~lg~v--~~~-~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~- 347 (460)
T 3gju_A 277 DHY-GIKPD---LITIAKGLT-SAYAPLSGV--IVA-DRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDE- 347 (460)
T ss_dssp HHH-TCCCS---EEEECGGGT-TTSSCCEEE--EEE-HHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHH-
T ss_pred hhc-CCCCC---eeeeehhhc-CCCCCeEEE--EEC-HHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh-
Confidence 222 21222 336899987 45 899999 565 4433333221 01123334557888899988888863310
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec--CC-C-----------HHHHHHhHhhccEEEc
Q 015435 312 KEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT--GL-N-----------SEQVAFMTKEYHIYMT 377 (407)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~-----------~~~~~~~l~~~gi~~~ 377 (407)
.+..++.++..+..++.+.+.++..+. +....+.|.++.+. .- . ...+.+.+.++||.+.
T Consensus 348 ---~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~ 421 (460)
T 3gju_A 348 ---MDLVTNAGETGAYFRAELAKAVGGHKN---VGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGR 421 (460)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHHHHTTSTT---EEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECE
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHhcCCC---eEEEeeeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEe
Confidence 022344445555555555555555442 34445555544332 10 0 2334444555799999
Q ss_pred CCC-----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 378 SDG-----RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 378 ~gg-----Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
+++ ||++.. .+++++++++++|+++++++
T Consensus 422 ~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 456 (460)
T 3gju_A 422 AMPQGDILGFAPPLCLTREQADIVVSKTADAVKSV 456 (460)
T ss_dssp ECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 864 777442 48899999999999998753
No 117
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.96 E-value=2.3e-28 Score=229.54 Aligned_cols=332 Identities=15% Similarity=0.100 Sum_probs=216.7
Q ss_pred CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435 30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG 109 (407)
Q Consensus 30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~ 109 (407)
.+..|+|+.+. .+ +.++.+.+++.+.+. +|.+..|..++++++++++....+ .++++|++ |+|+
T Consensus 12 ~p~~i~l~~~~----~~-~~~~~v~~a~~~~~~-------~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~--~~g~ 75 (359)
T 1svv_A 12 KPKPYSFVNDY----SV-GMHPKILDLMARDNM-------TQHAGYGQDSHCAKAARLIGELLE--RPDADVHF--ISGG 75 (359)
T ss_dssp ---CEECSCSC----SS-CCCHHHHHHHHHHTT-------CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEE--ESCH
T ss_pred CCeeEEecCCC----cC-CCCHHHHHHHHHHHh-------hccccccccHHHHHHHHHHHHHhC--CCCccEEE--eCCc
Confidence 45689998754 34 445555555555443 254555666666666666633222 23578999 9999
Q ss_pred ccHHHHHHHHHHhhcCCCeEEecCCCCCChHH--HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC-----CCcEEE
Q 015435 110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK--VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP-----SGAIVL 182 (407)
Q Consensus 110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~-----~~~~v~ 182 (407)
++++.+++.. .+.+||+|++++|+|..+.. .++..|.+++.+|. + ++.+|++++++.+.+.+ ++++++
T Consensus 76 t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~ 150 (359)
T 1svv_A 76 TQTNLIACSL--ALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPC--P-DGKLRVADIESALHENRSEHMVIPKLVY 150 (359)
T ss_dssp HHHHHHHHHH--HCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECC--T-TSCCCHHHHHHHHHHSCSTTSCEEEEEE
T ss_pred hHHHHHHHHH--HhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeC--C-CCeecHHHHHHHHHHHHhccCCCceEEE
Confidence 9999999544 36799999999999998877 47889999999987 2 57899999999997421 245666
Q ss_pred EecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc
Q 015435 183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV 262 (407)
Q Consensus 183 i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 262 (407)
+ ++| ||||.+++.+++++|+++|++||+++|+|++|.++..+....+...+. +.. ...++..|++|..+ + .++
T Consensus 151 ~-~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~--~~d~~~~s~~K~g~-~-~~~ 223 (359)
T 1svv_A 151 I-SNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLAD-IAR--LTDMFYIGATKAGG-M-FGE 223 (359)
T ss_dssp E-ESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHH-HHH--HCSEEEEECTTTTC-S-SCE
T ss_pred E-EcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhh-hhh--cCCEEEEecccCCC-C-Cce
Confidence 6 677 799999999999999999999999999999985542211111111111 001 12367788999633 2 456
Q ss_pred ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015435 263 GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTP 342 (407)
Q Consensus 263 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 342 (407)
|++ ++ ++++.+.+...... .......+......+..+++.. ..++.+++++++++++.+.|+..+
T Consensus 224 g~l--~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~l~~~L~~~~-- 288 (359)
T 1svv_A 224 ALI--IL-NDALKPNARHLIKQ--RGALMAKGWLLGIQFEVLMKDN--------LFFELGAHSNKMAAILKAGLEACG-- 288 (359)
T ss_dssp EEE--EC-SGGGCTTHHHHHHH--TTCCCTTTHHHHHHHHHHTSTT--------HHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred EEE--EE-cccHHHHHHHHHhc--CCcccccchhhHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHhccCC--
Confidence 777 34 55554444332111 1111111222222233345432 245677888899999999994344
Q ss_pred CCcccccCCceeEEecCCCHHHHHHhHhhccEEEcC---CC----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 343 GDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTS---DG----RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~---gg----Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
+.+..+.+++|.|+.+..+....+++++||.+.+ .+ ||+++. .+++++++++++|+++++++
T Consensus 289 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 289 --IRLAWPSASNQLFPILENTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp --CCBSSCCSSSEECBEEEHHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred --eEEccCCccceEEEEcCHHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 6666677888888877766666776755998743 12 888653 47899999999999988654
No 118
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.96 E-value=1.1e-27 Score=232.64 Aligned_cols=336 Identities=12% Similarity=0.080 Sum_probs=215.8
Q ss_pred CCCCeeeeeeeee-ecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 29 TSPVKLNLGVGAY-RTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 29 ~~~~~i~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
.+.++++++.|.+ .|-.....+.+..+++.+++. . ....|.+..+..++++++++++ +. +++++ |+
T Consensus 31 ~g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~--~-~~~~y~~~~~~~~l~~~la~~~-~~-------~~~~~--~~ 97 (456)
T 2ez2_A 31 AGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMM--M-GDEAYAGSENFYHLERTVQELF-GF-------KHIVP--TH 97 (456)
T ss_dssp TTTCGGGSCGGGCSEECSCSSSCCCCCHHHHHHHT--T-CCCCSSSCHHHHHHHHHHHHHH-CC-------SEEEE--ES
T ss_pred CCCCcccCCcccceeeeccccCCccCCHHHHHHhh--c-chhhcccChhHHHHHHHHHHHh-CC-------CcEEE--eC
Confidence 3456677776642 222221122233344555554 1 1335877888999999999998 53 57999 99
Q ss_pred CcccHHHHHHHHHHhhcCCCeEEecCCCC-CChHHHHhhcCceeeEEEeec---CC-----CCCcChhhHHHHHHcCCCC
Q 015435 108 SGTGSLRVGAEFLARHYHQLTIYIPQPTW-GNHPKVFTLAGLSVKTYRYYD---PA-----TRGLNFQGLLEDLRAAPSG 178 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y-~~~~~~~~~~G~~~~~v~~~~---~~-----~~~~d~~~l~~~i~~~~~~ 178 (407)
||++++.++++.+ +.+|| +++.|+| ..+...+...|.+++.+++.. +. ++.+|++++++++.+ ++
T Consensus 98 ~gt~a~~~al~~l--~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~--~t 171 (456)
T 2ez2_A 98 QGRGAENLLSQLA--IKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDE--KG 171 (456)
T ss_dssp SHHHHHHHHHHHH--CCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHH--HC
T ss_pred CcHHHHHHHHHHh--CCCCC--EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHh--cc
Confidence 9999999995433 77999 7888999 676888899999999998842 11 267899999999973 33
Q ss_pred ----cEEEEecCCCC-CCCCCCCHHHHHHHHHHHHHcCceeeecccccc----------ccCCCCCchhHHHHHHHHcCC
Q 015435 179 ----AIVLLHACAHN-PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQG----------FASGSLDADAQSVRMFVADGG 243 (407)
Q Consensus 179 ----~~v~i~~~p~N-PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~----------~~~~~~~~~~~~~~~~~~~~~ 243 (407)
+++++ ++|+| |||.+++.+++++|+++|++||++||+||+|.. +.+.+. ...++........
T Consensus 172 ~~~~~~v~l-~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~--~~~~~~~~~~~~~ 248 (456)
T 2ez2_A 172 AENIAYICL-AVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENK--SIAEIVHEMFSYA 248 (456)
T ss_dssp GGGEEEEEE-ESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTS--CHHHHHHHHHTTC
T ss_pred ccceeEEEE-eccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCc--chhhhhhhhcccC
Confidence 45555 88999 999999999999999999999999999999975 344432 1111110111223
Q ss_pred cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhc-ccCCCChhHHHH-HHHHhcChhhHHhHHHHH-HH
Q 015435 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRP-MYSSPPIHGASI-VATILKDSTMYKEWTLEL-KA 320 (407)
Q Consensus 244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~-~~ 320 (407)
+++++ |++|..+ +| +.||+ +++++++.+.+.......... ...+.+.....+ +...++ .+ +.
T Consensus 249 d~~~~-S~kk~~~-~~-~gG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~----------~~~~~ 313 (456)
T 2ez2_A 249 DGCTM-SGKKDCL-VN-IGGFL--CMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLRE----------AMQYE 313 (456)
T ss_dssp SEEEE-ETTTTTC-CS-SCEEE--EESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHH----------HTCHH
T ss_pred CEEEE-eCcccCC-CC-ceeEE--EECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHH----------HhHHH
Confidence 45544 7777654 66 78998 565666655544322111110 011222222222 222221 11 23
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-------CH-HH-----HHHhHhhccEEEcC---------
Q 015435 321 MADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-------NS-EQ-----VAFMTKEYHIYMTS--------- 378 (407)
Q Consensus 321 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~-----~~~~l~~~gi~~~~--------- 378 (407)
..++.+++.+++.+.|++.+ +.+..|.++++.|+.+ +. ++ ...+++++||.+.+
T Consensus 314 ~~~~~~~~~~~l~~~L~~~g----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~ 389 (456)
T 2ez2_A 314 YIEHRVKQVRYLGDKLKAAG----VPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRN 389 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----CCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBC
T ss_pred HHHHHHHHHHHHHHHHhcCC----CccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccC
Confidence 33445566678888887765 5666677777777532 22 22 33444678987532
Q ss_pred ---------C-C--eEEecC--CCCCChhHHHHHHHHHHHh
Q 015435 379 ---------D-G--RISMAG--LSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 379 ---------g-g--Ris~~~--~~~e~i~~~~~~l~~~l~~ 405 (407)
+ + ||+++. .+++++++++++|++++++
T Consensus 390 ~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~ 430 (456)
T 2ez2_A 390 NVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp TTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred ccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 1 2 888873 4789999999999998865
No 119
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.96 E-value=1.9e-28 Score=232.28 Aligned_cols=293 Identities=15% Similarity=0.110 Sum_probs=204.7
Q ss_pred CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC--hHHHHhhcCceeeE
Q 015435 75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN--HPKVFTLAGLSVKT 152 (407)
Q Consensus 75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~ 152 (407)
....++++.+++++ +... +.+++++ |+|+++++. + +...+.+||+|++++|+|.+ +...++..|.+++.
T Consensus 35 ~~~~~~~~~la~~~-~~~~---~~~~v~~--~~g~t~al~-~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~ 105 (384)
T 3zrp_A 35 EALAYSLKGLRYVM-GASK---NYQPLII--PGGGTSAME-S--VTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVKV 105 (384)
T ss_dssp HHHHHHHHHHHHHH-TCCT---TSEEEEE--ESCHHHHHH-H--GGGGCCTTCEEEEECSSHHHHHHHHHHTTSSCEEEE
T ss_pred HHHHHHHHHHHHHh-CCCC---CCcEEEE--cCCcHHHHH-H--HHhhcCCCCEEEEecCCcchHHHHHHHHHcCCcEEE
Confidence 45678888999988 4321 1267999 999999999 7 34557899999999999865 55666788999999
Q ss_pred EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435 153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA 232 (407)
Q Consensus 153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~ 232 (407)
++.+ .++.+|++++++.+.+. +++++++ ++|+||||.+++ +++|.++|++||+++|+|+++...... . +
T Consensus 106 v~~~--~~~~~d~~~l~~~i~~~-~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-~--~- 174 (384)
T 3zrp_A 106 LRPS--PGDYVKPGEVEEEVRKS-EYKLVAL-THVETSTGVREP---VKDVINKIRKYVELIVVDGVSSVGAEE-V--K- 174 (384)
T ss_dssp ECCS--TTCCCCHHHHHHHHHHS-CEEEEEE-ESEETTTTEECC---HHHHHHHHGGGEEEEEEECTTTTTTSC-C--C-
T ss_pred ecCC--CCCCCCHHHHHHHHHhC-CCcEEEE-eCCCCCCceECc---HHHHHHHHHhcCCEEEEECcccccCcc-c--c-
Confidence 9983 35678999999999832 4566655 899999999887 778888899999999999998643321 1 0
Q ss_pred HHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHH------------HHHHhhh-h-----hccc-CCC
Q 015435 233 QSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRV------------ESQLKLV-I-----RPMY-SSP 293 (407)
Q Consensus 233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~------------~~~~~~~-~-----~~~~-~~~ 293 (407)
....+..++++|+||.++ ++.++|++ +++ +++.+.+ ....... . .... .++
T Consensus 175 ------~~~~~~d~~~~s~~K~~~-~~~g~g~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 244 (384)
T 3zrp_A 175 ------AEEWNVDVYLTASQKALG-SAAGLGLL--LLS-PKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATP 244 (384)
T ss_dssp ------TTTTTCSEEEEETTSTTC-CCSSEEEE--EEC-HHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCC
T ss_pred ------ccccCCCEEEecCccccc-CCCceEEE--EEC-HHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCC
Confidence 111245688999999885 23458888 454 5544443 1111111 1 1111 145
Q ss_pred ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC----ceeEEec---CCCHHHHH
Q 015435 294 PIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ----IGMFTFT---GLNSEQVA 366 (407)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~ 366 (407)
+...+.++..+++... ...+++.+++++++++++.+.|++.+ +.+..+. ++.+.++ +.+.+.+.
T Consensus 245 ~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (384)
T 3zrp_A 245 PVHVILQLAEAFRLIE-----KEGIENRIKRHTMVASAIRAGLEALG----LEIVARRPESYSNTVTGVILKVADPQKVL 315 (384)
T ss_dssp CHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTT----CCBSCSSGGGBCSSEEEEECSSSCHHHHH
T ss_pred CHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHHHHCC----CeEccCcccccCccEEEEECCCCCHHHHH
Confidence 5555555555554221 12267888899999999999999886 5555444 3444444 34566666
Q ss_pred HhHhhccEEEcCCC-------eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 367 FMTKEYHIYMTSDG-------RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 367 ~~l~~~gi~~~~gg-------Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
+.|.++||.+.+|. ||++.. .+++++++++++|+++++++
T Consensus 316 ~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~ 363 (384)
T 3zrp_A 316 AGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKL 363 (384)
T ss_dssp HHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHc
Confidence 55666799998864 888764 47799999999999999765
No 120
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.96 E-value=3.8e-29 Score=241.63 Aligned_cols=340 Identities=10% Similarity=0.007 Sum_probs=214.9
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCC-CceEEeec
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKD-NRVTTVQC 106 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~-~~i~~~~t 106 (407)
..+++++||+.|.+..+.| ..++.+++++.+++. . ...|....+..++++++++++....+. .. +++++ |
T Consensus 40 ~~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~--~--~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~v~~--~ 110 (439)
T 3dxv_A 40 ENGRELIDLSGAWGAASLG-YGHPAIVAAVSAAAA--N--PAGATILSASNAPAVTLAERLLASFPG--EGTHKIWF--G 110 (439)
T ss_dssp TTSCEEEESSTTTTTCTTC-BSCHHHHHHHHHHHH--S--CSCSCSSSSEEHHHHHHHHHHHHTTTC--TTTEEEEE--E
T ss_pred CCCCEEEECCCchhhccCC-CCCHHHHHHHHHHHH--h--ccCccccccCCHHHHHHHHHHHHhCCC--CCCCEEEE--e
Confidence 3568899999998755566 456677777777775 2 233544455556666666666443221 23 68999 9
Q ss_pred CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCce---------------eeEEEeecCCCCCc----Chhh
Q 015435 107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLS---------------VKTYRYYDPATRGL----NFQG 167 (407)
Q Consensus 107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~---------------~~~v~~~~~~~~~~----d~~~ 167 (407)
+||+++++.+++++..+.+++.|++.+|+|+++.......+.. +..++..+ ..... |+++
T Consensus 111 ~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~ 189 (439)
T 3dxv_A 111 HSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRP-YRNDPTGDAILTL 189 (439)
T ss_dssp SSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSC-BTTBTTSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCc-ccccccHHHHHHH
Confidence 9999999999766544557789999999997766554433222 12233311 00111 6899
Q ss_pred HHHHHH-cC-CCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435 168 LLEDLR-AA-PSGAIVLLHACAHNPTGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244 (407)
Q Consensus 168 l~~~i~-~~-~~~~~v~i~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~ 244 (407)
+++.+. .. ++++++++ .+++|++|.+. +.+.+++|+++|++||++||+||+|.+|...+. ......+ ....+
T Consensus 190 le~~l~~~~~~~~~~vi~-~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~---~~~~~~~-~~~~d 264 (439)
T 3dxv_A 190 LTEKLAAVPAGSIGAAFI-EPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR---LHCFEHE-GFVPD 264 (439)
T ss_dssp HHHHHHTSCTTCEEEEEE-CSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS---SSGGGGT-TCCCS
T ss_pred HHHHHHhcCCCCEEEEEE-ccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch---hhHHHhc-CCCCC
Confidence 999984 22 23445555 66777888765 555699999999999999999999998865432 1111111 11223
Q ss_pred EEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435 245 CLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR 324 (407)
Q Consensus 245 ~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 324 (407)
++ ||||.++ +|+|+||+ +++ +.+.+.+.......++ ++++++.++.++++... + +...++
T Consensus 265 i~---s~sK~~~-~G~riG~~--~~~-----~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~------~--~~~~~~ 324 (439)
T 3dxv_A 265 IL---VLGKGLG-GGLPLSAV--IAP-----AEILDCASAFAMQTLH-GNPISAAAGLAVLETID------R--DDLPAM 324 (439)
T ss_dssp EE---EECGGGG-TTSCCEEE--EEE-----HHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHH------H--TTHHHH
T ss_pred EE---EEcchhc-CCcceEEE--EEC-----HHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHH------h--cCHHHH
Confidence 33 8999999 69999999 566 5565555544334455 78888888887776331 1 233445
Q ss_pred HHHHHHHHHHHHHhc----CCCCCcccccCCceeEEecCC---------C---HHHHHHhHhhccEEEcCCC------eE
Q 015435 325 IISMRQQLFDALSAR----GTPGDWSHIIKQIGMFTFTGL---------N---SEQVAFMTKEYHIYMTSDG------RI 382 (407)
Q Consensus 325 ~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~~l~~~gi~~~~gg------Ri 382 (407)
++++++++.+.|+++ +. .....+.+.++ ++.+ + ...+.+.+.++||.+.+++ ||
T Consensus 325 ~~~~~~~~~~~l~~~~~~~~~---~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi 400 (439)
T 3dxv_A 325 AERKGRLLRDGLSELAKRHPL---IGDIRGRGLAC-GMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEF 400 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT---EEEEEEETTEE-EEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCC---eEEEEEEEEEE-EEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEE
Confidence 555555555555543 31 33344445444 3322 1 2233344445799998864 77
Q ss_pred EecC-CCCCChhHHHHHHHHHHHhh
Q 015435 383 SMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 383 s~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
+++. .+++++++++++|+++++++
T Consensus 401 ~~~~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 401 TPPLTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6543 47899999999999998764
No 121
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.96 E-value=1.3e-28 Score=238.50 Aligned_cols=344 Identities=11% Similarity=0.030 Sum_probs=222.8
Q ss_pred CCC--CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc-cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435 29 TSP--VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK-EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ 105 (407)
Q Consensus 29 ~~~--~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~ 105 (407)
+++ ++|||..|.+..+.| ..++.+++++.+++. ...... .+.+.....++++.+++++ +. ..+++++
T Consensus 71 dG~~~~ylD~~s~~~~~~lG-h~~p~v~~A~~~~~~-~~~~~~~~~~~~~~~~~L~e~la~~~-~~-----~~~~v~~-- 140 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHG-HGHPALDQALTTQLR-VMNHVMFGGLTHEPAARLAKLLVDIT-PA-----GLDTVFF-- 140 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTC-BTCHHHHHHHHHHHH-HCSCCCSSSEECHHHHHHHHHHHHHS-ST-----TEEEEEE--
T ss_pred CCCeeEEEECCCcHhhhccC-CCCHHHHHHHHHHHH-hccCccccccCCHHHHHHHHHHHHhC-CC-----CcCEEEE--
Confidence 667 899999997655677 567788888877775 111111 2223344567777777766 21 2368999
Q ss_pred cCCcccHHHHHHHHHHhhc-----CC-CeEEecCCCCCChHHHHhhcC--------------ceeeEEEeecCCCCCcCh
Q 015435 106 CLSGTGSLRVGAEFLARHY-----HQ-LTIYIPQPTWGNHPKVFTLAG--------------LSVKTYRYYDPATRGLNF 165 (407)
Q Consensus 106 t~g~t~a~~~~~~~~~~~~-----~g-d~Vi~~~p~y~~~~~~~~~~G--------------~~~~~v~~~~~~~~~~d~ 165 (407)
|+||++|++.+++++.... +| +.|++.+++|.++.......+ ..+..++.........|+
T Consensus 141 ~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~ 220 (457)
T 3tfu_A 141 SDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYS 220 (457)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHH
T ss_pred eCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHH
Confidence 9999999999976664430 44 589999999988765544331 123334332111122478
Q ss_pred hhHHHHHHcCC-CCcEEEEecC-CCCCCCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcC
Q 015435 166 QGLLEDLRAAP-SGAIVLLHAC-AHNPTGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADG 242 (407)
Q Consensus 166 ~~l~~~i~~~~-~~~~v~i~~~-p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~ 242 (407)
+++++.+.+.+ +++++++ .+ ++||+|.+. +++++++|.++|++||++||+||+|.+|+..+. ......+ ...
T Consensus 221 ~~le~~l~~~~~~~aavi~-ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~---~~a~~~~-~~~ 295 (457)
T 3tfu_A 221 AAFEAQLAQHAGELAAVVV-EPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA---LFAADHA-GVS 295 (457)
T ss_dssp HHHHHHHHHHGGGEEEEEE-CSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCC
T ss_pred HHHHHHHHhCCCCEEEEEE-eCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc---hhHhHhc-CCC
Confidence 99999887432 3445555 56 799999875 788899999999999999999999999876542 2222222 222
Q ss_pred CcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhh-----hhhcccCCCChhHHHHHHHHhcChhhHHhHHH
Q 015435 243 GECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKL-----VIRPMYSSPPIHGASIVATILKDSTMYKEWTL 316 (407)
Q Consensus 243 ~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (407)
.+++ +|||.++ .| +|+||+ +++ +++.+.+.. +....+++.+++++.++.+.++...
T Consensus 296 pdii---t~sK~l~-gG~~~lG~v--~~~-----~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~------- 357 (457)
T 3tfu_A 296 PDIM---CVGKALT-GGYLSLAAT--LCT-----ADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLL------- 357 (457)
T ss_dssp CSEE---EECGGGG-TTSSCCEEE--EEE-----HHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHH-------
T ss_pred ceEE---EEChhhh-CCCcceEEE--EEc-----HHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHh-------
Confidence 3333 8899887 45 799999 565 444444431 1223445778888888887776321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecC----CCHHHHHHhHhhccEEEcCCC---eEEecC-CC
Q 015435 317 ELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTG----LNSEQVAFMTKEYHIYMTSDG---RISMAG-LS 388 (407)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~gg---Ris~~~-~~ 388 (407)
-+...++++++.+++.+.|+++.....+....+.|. |.++. .+...+.+.|.++||.+.|.+ ||++.. .+
T Consensus 358 -~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~-~~~i~l~~~~~~~~~~~~l~~~Gv~v~~~~~~lRi~p~~~~t 435 (457)
T 3tfu_A 358 -GQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGA-IGVIECDRPVDLAVATPAALDRGVWLRPFRNLVYAMPPYICT 435 (457)
T ss_dssp -TSCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEECSS-CEEEEESSCCCHHHHHHHHHHTTEECCCBTTEEEECCCTTCC
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecCCe-EEEEEECCcccHHHHHHHHHHCCeEEEecCCEEEEECCCCCC
Confidence 123456677777888888876531001333344444 33332 234555544455799999976 776543 48
Q ss_pred CCChhHHHHHHHHHHHhhC
Q 015435 389 SKTVPHLTDAIHAAVTRMG 407 (407)
Q Consensus 389 ~e~i~~~~~~l~~~l~~~~ 407 (407)
++++++++++|++++++++
T Consensus 436 ~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 436 PAEITQITSAMVEVARLVG 454 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8999999999999998753
No 122
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.96 E-value=3.3e-28 Score=234.38 Aligned_cols=341 Identities=10% Similarity=0.012 Sum_probs=218.6
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccc--cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSR--VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC 106 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t 106 (407)
.+..++|++.+.+..+.| +.++.+++++.+++. .... ...| +.....++++.+++++ + .++++|++ |
T Consensus 41 ~g~~ylD~~~~~~~~~lg-~~~p~v~~a~~~~~~-~~~~~~~~~~-~~~~~~~l~~~la~~~-~-----~~~~~v~~--~ 109 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHG-YNHPQLNAAMKSQID-AMSHVMFGGI-THAPAIELCRKLVAMT-P-----QPLECVFL--A 109 (429)
T ss_dssp TSCEEEESSTTTTTCTTC-BSCHHHHHHHHHHHH-HCSCCCCSSE-ECHHHHHHHHHHHHHS-C-----TTCCEEEE--E
T ss_pred CCCEEEEcCccHhhccCC-CCCHHHHHHHHHHHH-hccccccccc-CCHHHHHHHHHHHHhC-C-----CCCCEEEE--e
Confidence 457899999887533455 446677777777765 1111 1133 2233567778888876 3 23589999 9
Q ss_pred CCcccHHHHHHHHHHhh-c----CCCeEEecCCCCCChHHHHh-hcC-------------ceeeEEEeecC---CCC-Cc
Q 015435 107 LSGTGSLRVGAEFLARH-Y----HQLTIYIPQPTWGNHPKVFT-LAG-------------LSVKTYRYYDP---ATR-GL 163 (407)
Q Consensus 107 ~g~t~a~~~~~~~~~~~-~----~gd~Vi~~~p~y~~~~~~~~-~~G-------------~~~~~v~~~~~---~~~-~~ 163 (407)
+||+++++++++.+... . +||+|++++|+|+++..... ..| ..++.++.... ..+ .+
T Consensus 110 ~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (429)
T 1s0a_A 110 DSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDER 189 (429)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGG
T ss_pred CCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHH
Confidence 99999999997654322 2 58999999999987654332 111 13444544211 123 48
Q ss_pred ChhhHHHHHHcCCCCcEEEEecCC-CCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHc
Q 015435 164 NFQGLLEDLRAAPSGAIVLLHACA-HNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVAD 241 (407)
Q Consensus 164 d~~~l~~~i~~~~~~~~v~i~~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~ 241 (407)
|++++++.+.+.+.+..+++++.. +||||. ..+.+++++|+++|++||+++|+||+|.+|+..+. ......+ ..
T Consensus 190 d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~---~~~~~~~-~~ 265 (429)
T 1s0a_A 190 DMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK---LFACEHA-EI 265 (429)
T ss_dssp GGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGG-TC
T ss_pred HHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch---HHHhhhc-CC
Confidence 999999998742233444442433 699996 56788899999999999999999999998875432 1111111 11
Q ss_pred CCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhh-----hhcccCCCChhHHHHHHHHhcChhhHHhHH
Q 015435 242 GGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLV-----IRPMYSSPPIHGASIVATILKDSTMYKEWT 315 (407)
Q Consensus 242 ~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 315 (407)
..++ .||||.++ +| +|+||+ +++ ++ +.+.+... ....+.+++.+++.++.++++...
T Consensus 266 ~~d~---~t~sK~l~-~G~~~iG~~--~~~-~~----~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~------ 328 (429)
T 1s0a_A 266 APDI---LCLGKALT-GGTMTLSAT--LTT-RE----VAETISNGEAGCFMHGPTFMGNPLACAAANASLAILE------ 328 (429)
T ss_dssp CCSE---EEECGGGG-TSSSCCEEE--EEC-HH----HHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHH------
T ss_pred CCCE---EEeccccc-CCCccceEE--EeC-HH----HHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHH------
Confidence 2232 37899998 68 999999 565 34 44444332 122345678888888887775321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcccccCCceeEEecCC----CHHHHHHhHhhccEEEcCCC---eEEecC-
Q 015435 316 LELKAMADRIISMRQQLFDALSARG-TPGDWSHIIKQIGMFTFTGL----NSEQVAFMTKEYHIYMTSDG---RISMAG- 386 (407)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~gg---Ris~~~- 386 (407)
+ +...++++++++++.+.|++++ .+ .+....+.+. |.|+.+ +.+.+...|.++||.+.+.+ ||+++.
T Consensus 329 ~--~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~~~~g~-~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~iRis~~~~ 404 (429)
T 1s0a_A 329 S--GDWQQQVADIEVQLREQLAPARDAE-MVADVRVLGA-IGVVETTHPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYI 404 (429)
T ss_dssp T--CHHHHHHHHHHHHHHHHHGGGGGCT-TEEEEEEETT-EEEEEESSCBCHHHHHHHHHHTTEECCCBTTEEEECCCTT
T ss_pred h--CCHHHHHHHHHHHHHHHHHHHhcCC-CEEEEEEeeE-EEEEEECCcccHHHHHHHHHHCCCEEeccCCEEEEECCCC
Confidence 1 2345667778888888888753 11 1333344443 555433 45555444456899999865 888542
Q ss_pred CCCCChhHHHHHHHHHHHh
Q 015435 387 LSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 387 ~~~e~i~~~~~~l~~~l~~ 405 (407)
.+++++++++++|++++++
T Consensus 405 ~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 405 ILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp CCHHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4889999999999998754
No 123
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.96 E-value=4.4e-28 Score=230.88 Aligned_cols=291 Identities=10% Similarity=0.082 Sum_probs=203.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH--HHHhhcCceeeE
Q 015435 76 GLVDFNKLSAKLILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP--KVFTLAGLSVKT 152 (407)
Q Consensus 76 g~~~l~~~~a~~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~--~~~~~~G~~~~~ 152 (407)
...++|+.+++++ +. +++ +|++ |+|+++++.+++. ..+.+||+|++++|+|..+. ..++..|.+++.
T Consensus 52 ~~~~l~~~la~~~-~~-----~~~~~v~~--~~g~t~al~~~~~--~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 121 (396)
T 2ch1_A 52 TMDEVKDGLRYIF-QT-----ENRATMCV--SGSAHAGMEAMLS--NLLEEGDRVLIAVNGIWAERAVEMSERYGADVRT 121 (396)
T ss_dssp HHHHHHHHHHHHH-TC-----CCSCEEEE--SSCHHHHHHHHHH--HHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHh-CC-----CCCcEEEE--CCcHHHHHHHHHH--HhcCCCCeEEEEcCCcccHHHHHHHHHcCCceEE
Confidence 3789999999998 43 234 7999 9999999999953 34779999999999999884 467889999999
Q ss_pred EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435 153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA 232 (407)
Q Consensus 153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~ 232 (407)
++.+ .++.+|++++++.+++. +++++++ ++|+||||.+++ +++|+++|+++|+++|+|++|. +..... +
T Consensus 122 v~~~--~~~~~d~~~l~~~l~~~-~~~~v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~Dea~~-~g~~~~--~- 190 (396)
T 2ch1_A 122 IEGP--PDRPFSLETLARAIELH-QPKCLFL-THGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVAS-LCGVPF--Y- 190 (396)
T ss_dssp EECC--TTSCCCHHHHHHHHHHH-CCSEEEE-ESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT-BTTBCC--C-
T ss_pred ecCC--CCCCCCHHHHHHHHHhC-CCCEEEE-ECCCCCCceecC---HHHHHHHHHHcCCEEEEEcccc-ccCCcc--c-
Confidence 9983 35679999999999831 5677777 899999999998 7788888999999999999987 322111 1
Q ss_pred HHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHH-------H------hh-h-----hhcccCCC
Q 015435 233 QSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQ-------L------KL-V-----IRPMYSSP 293 (407)
Q Consensus 233 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~-------~------~~-~-----~~~~~~~~ 293 (407)
+ ...+..+++.|++|.++ ++.++|++ +++ ++..+.+... . +. . ......++
T Consensus 191 --~----~~~~~d~~~~s~~K~~~-~~~g~g~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (396)
T 2ch1_A 191 --M----DKWEIDAVYTGAQKVLG-APPGITPI--SIS-PKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTV 260 (396)
T ss_dssp --T----TTTTCCEEECCCC-CCC-CCSSCEEE--EEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCC
T ss_pred --h----hhcCcCEEEEcCCcccc-CCCCeEEE--EEC-HHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCC
Confidence 1 11123466789999765 33456888 455 3433332210 0 00 0 01122356
Q ss_pred ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCce----eEEec----CCCHHHH
Q 015435 294 PIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIG----MFTFT----GLNSEQV 365 (407)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~ 365 (407)
+..++.++..+++... .+.+++.+++++++++++.+.|++.| +.+..+.++ .+.++ +.+.+.+
T Consensus 261 ~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (396)
T 2ch1_A 261 ASNLIFALREALAQIA-----EEGLENQIKRRIECAQILYEGLGKMG----LDIFVKDPRHRLPTVTGIMIPKGVDWWKV 331 (396)
T ss_dssp CHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHHT----CCBSSCSGGGBCTTEEEEECCTTCCHHHH
T ss_pred cHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHCC----CeeccCCccccCCceEEEEcCCCCCHHHH
Confidence 6777777776665321 13467788899999999999999886 555555442 23333 3455555
Q ss_pred H-HhHhhccEEEcCC------C--eEEe-c-CCCCCChhHHHHHHHHHHHhh
Q 015435 366 A-FMTKEYHIYMTSD------G--RISM-A-GLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 366 ~-~~l~~~gi~~~~g------g--Ris~-~-~~~~e~i~~~~~~l~~~l~~~ 406 (407)
. .+++++||.+.+| + ||++ + ..+++++++++++|+++++++
T Consensus 332 ~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~ 383 (396)
T 2ch1_A 332 SQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 383 (396)
T ss_dssp HHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 4 5556569999875 2 9998 3 236788999999999998764
No 124
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.96 E-value=4.1e-28 Score=230.83 Aligned_cols=292 Identities=14% Similarity=0.125 Sum_probs=201.9
Q ss_pred CCCcHHHHHHHHHHHhCCCCCCCCCC-ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCCh--HHHHhhcCcee
Q 015435 74 IVGLVDFNKLSAKLILGADSPAIKDN-RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNH--PKVFTLAGLSV 150 (407)
Q Consensus 74 ~~g~~~l~~~~a~~~~~~~~~~~~~~-~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~--~~~~~~~G~~~ 150 (407)
..+..++++.+++++ +. +++ +|++ |+|+++++.+++.. .+.+||+|++++|+|+++ ...++..|.++
T Consensus 51 ~~~~~~l~~~la~~~-g~-----~~~~~i~~--~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~ 120 (393)
T 2huf_A 51 LKIMDDIKEGVRYLF-QT-----NNIATFCL--SASGHGGMEATLCN--LLEDGDVILIGHTGHWGDRSADMATRYGADV 120 (393)
T ss_dssp HHHHHHHHHHHHHHH-TC-----CCSEEEEE--SSCHHHHHHHHHHH--HCCTTCEEEEEESSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHh-CC-----CCCcEEEE--cCcHHHHHHHHHHH--HhCCCCEEEEECCCcchHHHHHHHHHcCCee
Confidence 346789999999988 43 223 7989 99999999999543 377999999999999874 23456689999
Q ss_pred eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435 151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA 230 (407)
Q Consensus 151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~ 230 (407)
+.+++. .++.+|++++++.+++. +++++++ ++|+||||.+++ +++|+++|++||+++|+|+++.. .....
T Consensus 121 ~~v~~~--~~~~~d~~~l~~~i~~~-~~~~v~~-~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~~-~~~~~-- 190 (393)
T 2huf_A 121 RVVKSK--VGQSLSLDEIRDALLIH-KPSVLFL-TQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVASL-GGAPM-- 190 (393)
T ss_dssp EEEECC--TTCCCCHHHHHHHHHHH-CCSEEEE-ESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTB-TTBCC--
T ss_pred EEEeCC--CCCCCCHHHHHHHHhcc-CCcEEEE-EccCCCccccCC---HHHHHHHHHHcCCEEEEEccccc-CCCCc--
Confidence 999983 34579999999999721 5677777 899999999987 78888889999999999999752 21111
Q ss_pred hhHHHHHHHHcCCcEEEEEecCcc-ccccCCCcceeEEeecChhhHHHHHHH---Hhhhh----------------hccc
Q 015435 231 DAQSVRMFVADGGECLVAQSYAKN-MGLYGERVGALSIVCKTEDVASRVESQ---LKLVI----------------RPMY 290 (407)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~G~~~~v~~~~~~~~~~~~~---~~~~~----------------~~~~ 290 (407)
+ + ...+..+++.|+||. ++++|+ ||+ +++ +++.+.+... ..... +...
T Consensus 191 ~---~----~~~~~d~~~~s~sK~l~g~~G~--G~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (393)
T 2huf_A 191 F---M----DRWEIDAMYTGSQKVLGAPPGI--TPV--SFS-HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYH 258 (393)
T ss_dssp C---T----TTTTCSEEECCSSSTTCCCSSC--EEE--EEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCS
T ss_pred c---h----hhcCccEEEECCCcccccCCCe--EEE--EEC-HHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCC
Confidence 1 1 112456888999997 456776 888 465 5544443321 00000 0111
Q ss_pred CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC---ceeEEec----CCCHH
Q 015435 291 SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ---IGMFTFT----GLNSE 363 (407)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~----~~~~~ 363 (407)
.+++..++.++..+++... ...+++.+++++++++++.+.|++.+ +.+..+. .+++.++ +.+.+
T Consensus 259 ~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (393)
T 2huf_A 259 HTISSTLLYGLREAIAMAC-----EEGLPALIARHEDCAKRLYRGLQDAG----FELYADPKDRLSTVTTIKVPQGVDWL 329 (393)
T ss_dssp CCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTT----CCBSSCGGGBCTTEEEEECCTTCCHH
T ss_pred CCCCHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHHHcC----CeeccCccccCCcEEEEEcCCCCCHH
Confidence 2445555555555554221 01366778889999999999999876 5544442 3434433 34555
Q ss_pred HHH-HhHhhccEEEcCC------C--eEEe-cC-CCCCChhHHHHHHHHHHHhh
Q 015435 364 QVA-FMTKEYHIYMTSD------G--RISM-AG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 364 ~~~-~~l~~~gi~~~~g------g--Ris~-~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
.+. .+++++||.+.++ + ||++ +. .+++++++++++|+++++++
T Consensus 330 ~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~ 383 (393)
T 2huf_A 330 KAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAV 383 (393)
T ss_dssp HHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHc
Confidence 554 5556679999875 2 9998 52 25678999999999998765
No 125
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.96 E-value=2.1e-27 Score=229.09 Aligned_cols=332 Identities=11% Similarity=0.088 Sum_probs=221.3
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc-ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV-KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC 106 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t 106 (407)
..++.+|||+.|....+.| ..++.+++++.+++. ..... ..| +.....++++.+++++ +. +++++ +
T Consensus 73 ~~g~~ylD~~sg~~~~~lg-h~~p~v~~Ai~~~~~-~~~~~~~~~-~~~~~~~l~~~la~~~-g~-------~~v~~--~ 139 (439)
T 2oat_A 73 VEGRKYFDFLSSYSAVNQG-HCHPKIVNALKSQVD-KLTLTSRAF-YNNVLGEYEEYITKLF-NY-------HKVLP--M 139 (439)
T ss_dssp TTCCEEEESSGGGGTTTTC-BTCHHHHHHHHHHHT-TCSCCCTTS-EESSHHHHHHHHHHHH-TC-------SEEEE--E
T ss_pred CCCCEEEEccCCcccccCC-CCCHHHHHHHHHHHH-hcCcccCcc-CCHHHHHHHHHHHHhc-CC-------CEEEE--e
Confidence 3467899999986533333 356677777777775 21111 123 3445778899999887 42 78999 9
Q ss_pred CCcccHHHHHHHHHHhh-------cCC-CeEEecCCCCCChHH-HHhhcC------------ceeeEEEeecCCCCCcCh
Q 015435 107 LSGTGSLRVGAEFLARH-------YHQ-LTIYIPQPTWGNHPK-VFTLAG------------LSVKTYRYYDPATRGLNF 165 (407)
Q Consensus 107 ~g~t~a~~~~~~~~~~~-------~~g-d~Vi~~~p~y~~~~~-~~~~~G------------~~~~~v~~~~~~~~~~d~ 165 (407)
+||++|++.+++++..+ .+| |+|++++|+|++... .+...| .+++.+|. .|+
T Consensus 140 ~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~ 212 (439)
T 2oat_A 140 NTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDL 212 (439)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCH
T ss_pred CCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCH
Confidence 99999999997665421 356 899999999987644 444444 34455543 288
Q ss_pred hhHHHHHHcCCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCc
Q 015435 166 QGLLEDLRAAPSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 244 (407)
Q Consensus 166 ~~l~~~i~~~~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~ 244 (407)
+++++.+.. ++++++++ ...+|+||. +++.+++++|.++|++||++||+||+|.++...+. ......+ ....+
T Consensus 213 ~~le~~l~~-~~~~~vi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~---~~~~~~~-~~~~D 286 (439)
T 2oat_A 213 PALERALQD-PNVAAFMV-EPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR---WLAVDYE-NVRPD 286 (439)
T ss_dssp HHHHHHTTS-TTEEEEEE-CSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGGG-TCCCS
T ss_pred HHHHHHhCC-CCEEEEEE-ECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc---chhHHHh-CCCCc
Confidence 999998851 33444444 444567896 57999999999999999999999999988776542 1111111 11122
Q ss_pred EEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435 245 CLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD 323 (407)
Q Consensus 245 ~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (407)
++ |+||.++ +| +|+||+ +++ +++.+.+.......+++.+++++.++...++... + +...+
T Consensus 287 i~---t~sK~l~-~G~~~~G~v--~~~-----~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~------~--~~~~~ 347 (439)
T 2oat_A 287 IV---LLGKALS-GGLYPVSAV--LCD-----DDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLE------E--ENLAE 347 (439)
T ss_dssp EE---EECGGGG-TTSSCCEEE--EEC-----HHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHH------H--TTHHH
T ss_pred EE---Eeccccc-CCCCCeEEE--EEC-----HHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHh------h--hhHHH
Confidence 22 8999999 68 999999 576 4455545443334455778888888877776331 1 24567
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC------CHHHHHHhHhhccEEEcCCC----eEEecC-CCCCCh
Q 015435 324 RIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL------NSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTV 392 (407)
Q Consensus 324 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i 392 (407)
+++++++++.+.|++++.+. +....+.+. +.++.+ +...+...|.++||.+.|++ ||+++. .+++++
T Consensus 348 ~~~~~~~~l~~~L~~l~~~~-~~~~~~~g~-~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i 425 (439)
T 2oat_A 348 NADKLGIILRNELMKLPSDV-VTAVRGKGL-LNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDEL 425 (439)
T ss_dssp HHHHHHHHHHHHHTTSCTTT-EEEEEEETT-EEEEEECCCSSCCHHHHHHHHHHTTEECCBSSSSEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCC-cEEEEeeee-EEEEEEecCccHHHHHHHHHHHHCCeEEecCCCCEEEEECccCCCHHHH
Confidence 78889999999998875221 111233343 444422 24445444455899999864 886652 488999
Q ss_pred hHHHHHHHHHHHhh
Q 015435 393 PHLTDAIHAAVTRM 406 (407)
Q Consensus 393 ~~~~~~l~~~l~~~ 406 (407)
++++++|+++++++
T Consensus 426 ~~~l~~l~~~l~~~ 439 (439)
T 2oat_A 426 RESIEIINKTILSF 439 (439)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998753
No 126
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.96 E-value=3.3e-28 Score=234.31 Aligned_cols=331 Identities=11% Similarity=0.108 Sum_probs=210.2
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc-ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV-KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
.++.+|||+.|....+.| ..++.+++++.+++. ..... ..| +.....++++.+++++ +. +++++ |+
T Consensus 63 ~G~~ylD~~~g~~~~~lg-h~~p~v~~ai~~~~~-~~~~~~~~~-~~~~~~~l~~~la~~~-g~-------~~v~~--~~ 129 (433)
T 1z7d_A 63 NDKRYYDFLSAYSSVNQG-HCHPNILNAMINQAK-NLTICSRAF-FSVPLGICERYLTNLL-GY-------DKVLM--MN 129 (433)
T ss_dssp TCCEEEESSHHHHTTTTC-BTCHHHHHHHHHHHT-TCSCCCTTS-EEHHHHHHHHHHHHHH-TC-------SEEEE--ES
T ss_pred CCCEEEEcccchhhcccC-CCCHHHHHHHHHHHH-hCCCccCCc-CCHHHHHHHHHHHhhc-CC-------CeEEE--eC
Confidence 467899999886433333 356677777777775 21111 123 3334667888888876 42 78999 99
Q ss_pred CcccHHHHHHHHHHhh-------cCC-CeEEecCCCCCChHH-HHhhcC------------ceeeEEEeecCCCCCcChh
Q 015435 108 SGTGSLRVGAEFLARH-------YHQ-LTIYIPQPTWGNHPK-VFTLAG------------LSVKTYRYYDPATRGLNFQ 166 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~-------~~g-d~Vi~~~p~y~~~~~-~~~~~G------------~~~~~v~~~~~~~~~~d~~ 166 (407)
||++|++++++++... .+| |+|++++|+|+++.. .+...| .+++.+|. .|++
T Consensus 130 sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~ 202 (433)
T 1z7d_A 130 TGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLE 202 (433)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHH
T ss_pred CHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHH
Confidence 9999999997665321 367 899999999987644 333333 23333432 3899
Q ss_pred hHHHHHHcCCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435 167 GLLEDLRAAPSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245 (407)
Q Consensus 167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (407)
++++.+. .++++++++ ...+|+||.+ ++.+++++|.++|++||++||+||+|.++...+. ......+ ....++
T Consensus 203 ~le~~l~-~~~~~~vi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~---~~~~~~~-~~~~di 276 (433)
T 1z7d_A 203 ALEEELK-DPNVCAFIV-EPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK---LLCVHHY-NVKPDV 276 (433)
T ss_dssp HHHHHHT-STTEEEEEE-CSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGGG-TCCCSE
T ss_pred HHHHHhC-CCCEEEEEE-ECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc---chhhHhc-CCCCCE
Confidence 9999984 134455444 4446678975 7899999999999999999999999988766432 1111111 111222
Q ss_pred EEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 015435 246 LVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADR 324 (407)
Q Consensus 246 i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 324 (407)
+ ||||.++ +| +|+||+ +++ +++.+.+.......+++.+++++.++.++++... + +...++
T Consensus 277 ~---t~sK~l~-~G~~~~G~v--~~~-----~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~------~--~~~~~~ 337 (433)
T 1z7d_A 277 I---LLGKALS-GGHYPISAV--LAN-----DDIMLVIKPGEHGSTYGGNPLAASICVEALNVLI------N--EKLCEN 337 (433)
T ss_dssp E---EECGGGG-TTSSCCEEE--EEC-----HHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHH------H--TTHHHH
T ss_pred E---EECcccc-CCCCCeEEE--EEC-----HHHHhhhccccccccCCCCHHHHHHHHHHHHHHH------h--ccHHHH
Confidence 2 8999999 89 999999 566 4455545443334455778888888877775321 1 245567
Q ss_pred HHHHHHHHHHHHHhc--CCCCCcccccCCceeEEecCC-----CHHHHHHhHhhccEEEcCCC----eEEecC-CCCCCh
Q 015435 325 IISMRQQLFDALSAR--GTPGDWSHIIKQIGMFTFTGL-----NSEQVAFMTKEYHIYMTSDG----RISMAG-LSSKTV 392 (407)
Q Consensus 325 ~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i 392 (407)
++++++++.+.|+++ +.+. .....+.+. +.++.+ +...+.+.|.++||.+.|++ ||+++. .+++++
T Consensus 338 ~~~~~~~l~~~L~~l~~~~~~-~~~~~~~g~-~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i 415 (433)
T 1z7d_A 338 AEKLGGPFLENLKRELKDSKI-VRDVRGKGL-LCAIEFKNELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQL 415 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT-EEEEEEETT-EEEEEECTTTCCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCC-eEEEEeeee-EEEEEEccChhHHHHHHHHHHHCCeEEecCCCCEEEEECCcCCCHHHH
Confidence 777888888888765 4221 122233343 444422 34445444455899999853 887653 488999
Q ss_pred hHHHHHHHHHHHhh
Q 015435 393 PHLTDAIHAAVTRM 406 (407)
Q Consensus 393 ~~~~~~l~~~l~~~ 406 (407)
++++++|+++++++
T Consensus 416 ~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 416 DECTEIIVKTVKFF 429 (433)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 127
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.96 E-value=1.8e-27 Score=231.68 Aligned_cols=347 Identities=12% Similarity=0.065 Sum_probs=226.9
Q ss_pred hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435 27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC 106 (407)
Q Consensus 27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t 106 (407)
...++++|||+.|.+..+.| ..++.+++++.+++. . ..+.+ ...+..+.++++++++..... ...+++++ +
T Consensus 50 d~~G~~ylD~~s~~~~~~lG-h~~p~v~~A~~~~l~--~-~~~~~-~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~ 120 (476)
T 3i5t_A 50 TEDGRRLIDGPAGMWCAQVG-YGRREIVDAMAHQAM--V-LPYAS-PWYMATSPAARLAEKIATLTP--GDLNRIFF--T 120 (476)
T ss_dssp ETTCCEEEETTHHHHTCTTC-BCCHHHHHHHHHHHH--H-CCCCC-TTTCBCHHHHHHHHHHHTTSS--TTCCEEEE--E
T ss_pred ECCCCEEEECCCchhhccCC-CCCHHHHHHHHHHHH--h-ccCcc-cCccCCHHHHHHHHHHHhcCC--CCcCEEEE--e
Confidence 34578999999997756667 567788888888876 2 12212 224555677778887755432 23478999 9
Q ss_pred CCcccHHHHHHHHHHhh------cCCCeEEecCCCCCChHHHHhhcCce-------------eeEEEeecC-CCCCcC--
Q 015435 107 LSGTGSLRVGAEFLARH------YHQLTIYIPQPTWGNHPKVFTLAGLS-------------VKTYRYYDP-ATRGLN-- 164 (407)
Q Consensus 107 ~g~t~a~~~~~~~~~~~------~~gd~Vi~~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~-~~~~~d-- 164 (407)
+||++|++.+++++... ..++.|++.+|+|+++.......+.. +..++.... ..+..+
T Consensus 121 ~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 200 (476)
T 3i5t_A 121 TGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQE 200 (476)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHH
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchH
Confidence 99999999998776554 34679999999999887655543322 222222100 001112
Q ss_pred ------hhhHHHHHHcC-CCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHH
Q 015435 165 ------FQGLLEDLRAA-PSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVR 236 (407)
Q Consensus 165 ------~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~ 236 (407)
+++|++.+.+. +.+..++++.+++|++|. +++++++++|+++|++||++||+||+|.+|+..+. .+...
T Consensus 201 ~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~---~~~~~ 277 (476)
T 3i5t_A 201 AFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGE---WFASE 277 (476)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SCHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccC---ceeee
Confidence 77888888632 133344444667888886 78999999999999999999999999999987642 22322
Q ss_pred -HHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhh-------hhcccCCCChhHHHHHHHHhcC
Q 015435 237 -MFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLV-------IRPMYSSPPIHGASIVATILKD 307 (407)
Q Consensus 237 -~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
.+ ....+++ ++||.++ .| +|+|++ +++ +++.+.+... ....+++.+++++.++.++|+.
T Consensus 278 ~~~-~v~pdi~---t~sK~l~-~G~~plg~v--~~~-----~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~ 345 (476)
T 3i5t_A 278 KVF-GVVPDII---TFAKGVT-SGYVPLGGL--AIS-----EAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIEL 345 (476)
T ss_dssp HTT-CCCCSEE---EECGGGG-TTSSCCEEE--EEC-----HHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHH
T ss_pred ccc-CCCcchh---hhhhhhc-CCCcCeEEE--EEC-----HHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHH
Confidence 11 1122333 5889998 58 999999 565 4555555432 2234557888899988888763
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec-CCC-------------HHHHHHhHhhcc
Q 015435 308 STMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT-GLN-------------SEQVAFMTKEYH 373 (407)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~~~l~~~g 373 (407)
.. + +.+.++++++.+++.+.|+.++....+....+.|.++.+. .-+ ...+...+.++|
T Consensus 346 ~~------~--~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 417 (476)
T 3i5t_A 346 ME------R--EGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELG 417 (476)
T ss_dssp HH------H--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTT
T ss_pred HH------h--HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHCC
Confidence 31 1 3456677778888888887653111133344555554332 111 223444445579
Q ss_pred EEEcCCC---eEEec-CCCCCChhHHHHHHHHHHHh
Q 015435 374 IYMTSDG---RISMA-GLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 374 i~~~~gg---Ris~~-~~~~e~i~~~~~~l~~~l~~ 405 (407)
|.+.+.| ||+.. ..+++++++++++|++++++
T Consensus 418 v~v~~~g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~ 453 (476)
T 3i5t_A 418 LIVRPLGDLCVISPPLIISRAQIDEMVAIMRQAITE 453 (476)
T ss_dssp EECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999865 77733 24889999999999999865
No 128
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.96 E-value=3.5e-28 Score=234.48 Aligned_cols=342 Identities=12% Similarity=0.035 Sum_probs=212.0
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
.+..++|++.|.+..+.| +.++++++++.+++.........| +.....++++.+++++ + .+.++|++ |+|
T Consensus 41 ~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-~-----~~~~~v~~--~~g 110 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLG-HCHPEIVSVIGEYAGKLDHLFSEM-LSRPVVDLATRLANIT-P-----PGLDRALL--LST 110 (433)
T ss_dssp TCCEEEETTHHHHTCTTC-BTCHHHHHHHHHHHHHCCCCCTTC-CCHHHHHHHHHHHHHS-C-----TTCCEEEE--ESC
T ss_pred CCCEEEEcccchhccccC-CCCHHHHHHHHHHHHhCccccccc-CCHHHHHHHHHHHHhC-C-----CCcCEEEE--eCc
Confidence 467899998887533456 456677777777775111011223 2233456677777765 3 12489999 999
Q ss_pred cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc------------CceeeEEEeecCC--CC--------CcChh
Q 015435 109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA------------GLSVKTYRYYDPA--TR--------GLNFQ 166 (407)
Q Consensus 109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~------------G~~~~~v~~~~~~--~~--------~~d~~ 166 (407)
|+++++.+++++.....+++|++.+|+|+++....... ...+..++..... .+ .+|++
T Consensus 111 g~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~ 190 (433)
T 1zod_A 111 GAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD 190 (433)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHH
Confidence 99999999755433334689999999998765533311 0123334331110 11 23689
Q ss_pred hHHHHHHcC-CCCcEEEEecCC-CCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCC
Q 015435 167 GLLEDLRAA-PSGAIVLLHACA-HNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGG 243 (407)
Q Consensus 167 ~l~~~i~~~-~~~~~v~i~~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~ 243 (407)
++++.+.+. +.+..+++ ++| +||||. +++.+++++|+++|++||++||+||+|.+|+..+. ......+ ....
T Consensus 191 ~le~~l~~~~~~~~~~vi-~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~---~~~~~~~-~~~~ 265 (433)
T 1zod_A 191 YAFDLIDRQSSGNLAAFI-AEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT---MFACQRD-GVTP 265 (433)
T ss_dssp HHHHHHHHHCCSCEEEEE-ECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCCC
T ss_pred HHHHHHHhcCCCCeEEEE-EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch---HhHHhhc-CCCC
Confidence 999988742 12333444 344 588996 57899999999999999999999999998876432 1122222 2122
Q ss_pred cEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh--hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435 244 ECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI--RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAM 321 (407)
Q Consensus 244 ~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 321 (407)
+ +.||||.++. |+|+||+ +++ +++ .+.+.... ...+.+.+.+++.++..+++... + +..
T Consensus 266 d---i~s~sK~~~~-G~~ig~~--~~~-~~~----~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~------~--~~~ 326 (433)
T 1zod_A 266 D---ILTLSKTLGA-GLPLAAI--VTS-AAI----EERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ------R--DGL 326 (433)
T ss_dssp S---EEEECHHHHT-TSSCEEE--EEC-HHH----HHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHH------H--TTH
T ss_pred C---EEEecccccC-CCCeeEE--EEh-HHH----HHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHH------h--CCH
Confidence 2 3489999995 9999999 565 444 44343321 11345678888888877775321 1 134
Q ss_pred HHHHHHHHHHHHHHHHhcC--CCCCcccccCCceeEEecCC------------CHHHHHHhHhhccEEEcCC------C-
Q 015435 322 ADRIISMRQQLFDALSARG--TPGDWSHIIKQIGMFTFTGL------------NSEQVAFMTKEYHIYMTSD------G- 380 (407)
Q Consensus 322 ~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi~~~~g------g- 380 (407)
.++++++++++.+.|+++. .+ .+....+.+. |.|+.+ ....+...+.++||.+.++ +
T Consensus 327 ~~~~~~~~~~l~~~l~~l~~~~~-~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~ 404 (433)
T 1zod_A 327 VARANVMGDRLRRGLLDLMERFD-CIGDVRGRGL-LLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGV 404 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETT-EEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEE-EEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCE
Confidence 4566666777777766541 11 0233344444 444422 1333444444689999875 3
Q ss_pred -eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 381 -RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 381 -Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
||+++. .+++++++++++|+++++++
T Consensus 405 lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 405 FRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 776542 48899999999999998764
No 129
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.96 E-value=6.1e-28 Score=226.07 Aligned_cols=286 Identities=14% Similarity=0.069 Sum_probs=199.8
Q ss_pred CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH--HHHhhcCceeeE
Q 015435 75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP--KVFTLAGLSVKT 152 (407)
Q Consensus 75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~--~~~~~~G~~~~~ 152 (407)
.+..++++.+++++ +. +++++++ |+|+++++.++++. .+.+||+|++++|+|+++. ..++..|.+++.
T Consensus 34 ~~~~~l~~~la~~~-g~-----~~~~i~~--~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 103 (352)
T 1iug_A 34 EVFLKARGLLREAF-RT-----EGEVLIL--TGSGTLAMEALVKN--LFAPGERVLVPVYGKFSERFYEIALEAGLVVER 103 (352)
T ss_dssp HHHHHHHHHHHHHH-TC-----SSEEEEE--ESCHHHHHHHHHHH--HCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHh-CC-----CCceEEE--cCchHHHHHHHHHh--ccCCCCeEEEEeCCchhHHHHHHHHHcCCceEE
Confidence 45789999999998 43 2478999 99999999999533 3779999999999998865 445668999999
Q ss_pred EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc--CceeeeccccccccCCCCCc
Q 015435 153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK--GLLPFFDSAYQGFASGSLDA 230 (407)
Q Consensus 153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~--~~~li~D~~y~~~~~~~~~~ 230 (407)
++.+ .++.+|++++++ ++++++++ ++|+||||.+++ +++|.++|++| |+++|+|++|.. .....
T Consensus 104 v~~~--~~~~~d~~~l~~-----~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~-~~~~~-- 169 (352)
T 1iug_A 104 LDYP--YGDTPRPEDVAK-----EGYAGLLL-VHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTSL-LVGEV-- 169 (352)
T ss_dssp EECC--TTCCCCTTTSCC-----SSCSEEEE-ESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTTB-TTBCC--
T ss_pred EeCC--CCCCCCHHHHhc-----cCCcEEEE-EEecCCcceecC---HHHHHHHHHhhCCCCEEEEECCccc-cCcce--
Confidence 9983 345688888876 35677666 899999999887 67888889999 999999999862 21111
Q ss_pred hhHHHHHHHHcCCcEEEEEecCccc-cccCCCcceeEEeecChhhHHH---------HHHHHhhh-hhcccCCCChhHHH
Q 015435 231 DAQSVRMFVADGGECLVAQSYAKNM-GLYGERVGALSIVCKTEDVASR---------VESQLKLV-IRPMYSSPPIHGAS 299 (407)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~v~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~ 299 (407)
+ + ...+..++++|+||.+ +.+ ++||+ +++ ++..++ +....... ......+++...+.
T Consensus 170 ~---~----~~~~~d~~~~s~~K~~~~~~--g~G~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (352)
T 1iug_A 170 A---L----EAMGVDAAASGSQKGLMCPP--GLGFV--ALS-PRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVL 237 (352)
T ss_dssp C---S----GGGTCSEEEEESSSTTCCCS--CEEEE--EEC-HHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHH
T ss_pred e---c----cccCeeEEEecCcccccCCC--ceeEE--EEC-HHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHH
Confidence 1 1 1113467899999954 433 47998 565 332222 11111111 11223356666666
Q ss_pred HHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC-ceeEEec----CCCHHHHHHhHhhccE
Q 015435 300 IVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ-IGMFTFT----GLNSEQVAFMTKEYHI 374 (407)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~l~~~gi 374 (407)
++..+++... +.+++.+++++++++++.+.|++.+ +.+..+. .+.+.|+ +.+.+.+.+.|.++||
T Consensus 238 a~~~al~~~~------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi 307 (352)
T 1iug_A 238 AVAAVLEEVL------PRLEEHLALKAWQNALLYGVGEEGG----LRPVPKRFSPAVAAFYLPEGVPYARVKEAFAQRGA 307 (352)
T ss_dssp HHHHHHHHHG------GGHHHHHHHHHHHHHHHHHHHHHTT----CEESCSSBCTTCEEEECCTTCCHHHHHHHHHTTTE
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHCC----CcccccccCCeEEEEEcCCCCCHHHHHHHHHHCCE
Confidence 6666665321 2256778889999999999999875 5655553 3444444 3456656555566799
Q ss_pred EEcCC------C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 375 YMTSD------G--RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 375 ~~~~g------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
.+.++ + ||+++. .+++++++++++|+++++++
T Consensus 308 ~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 308 VIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp ECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 99875 2 898875 35799999999999998764
No 130
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.96 E-value=1.3e-27 Score=230.27 Aligned_cols=329 Identities=14% Similarity=0.082 Sum_probs=204.6
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
..+++++|++.|.+..+.| ..++.+++++.+++. ......| +.....++++.+++++.+ .+++++ |+
T Consensus 50 ~~g~~ylD~~~~~~~~~lG-~~~p~v~~A~~~~~~--~~~~~~~-~~~~~~~la~~l~~~~~~-------~~~v~~--~~ 116 (429)
T 4e77_A 50 VDGKAYIDYVGSWGPMILG-HNHPAIRQAVIEAVE--RGLSFGA-PTEMEVKMAQLVTDLVPT-------MDMVRM--VN 116 (429)
T ss_dssp TTCCEEEESSGGGTTCTTC-BTCHHHHHHHHHHHT--TCSCCSS-CCHHHHHHHHHHHHHSTT-------CSEEEE--ES
T ss_pred CCCCEEEECCCchhccccC-CCCHHHHHHHHHHHH--hCcccCC-CCHHHHHHHHHHHhhCCC-------CCEEEE--eC
Confidence 4578999999998755666 557778888888775 2222234 445566777777776621 389999 99
Q ss_pred CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-hcCc-------------------eeeEEEeecCCCCCcChhh
Q 015435 108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-LAGL-------------------SVKTYRYYDPATRGLNFQG 167 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~~G~-------------------~~~~v~~~~~~~~~~d~~~ 167 (407)
||+++++.++++......++.|++.+++|+++..... ..|. .+..++. .|+++
T Consensus 117 sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~ 189 (429)
T 4e77_A 117 SGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY-------NDLAS 189 (429)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECT-------TCHHH
T ss_pred cHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC-------CCHHH
Confidence 9999999997765555577899999999987765221 1111 1111111 27899
Q ss_pred HHHHHHcCCCCcEEEEecCCCCCCCCC--CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435 168 LLEDLRAAPSGAIVLLHACAHNPTGVD--PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245 (407)
Q Consensus 168 l~~~i~~~~~~~~v~i~~~p~NPtG~~--~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (407)
+++.+.+.+.+..+++ ++|+||+|.+ .+.+.+++|.++|++||++||+||+|.+| ..+. ......+ ....+
T Consensus 190 le~~l~~~~~~~~~vi-~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~---~~~~~~~-~~~pd- 262 (429)
T 4e77_A 190 VRQAFEQYPQEVACII-VEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVAL---AGAQDYY-HVIPD- 262 (429)
T ss_dssp HHHHHHHSTTTEEEEE-ECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBT---TCHHHHT-TCCCS-
T ss_pred HHHHHHhcCCCEEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCc---chHHHhc-CCCCC-
Confidence 9999975433444445 5677776544 34556999999999999999999999988 4432 2222222 11122
Q ss_pred EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhh---hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLV---IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA 322 (407)
Q Consensus 246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 322 (407)
+.|+||.++ +|+|+||+ +++ +.+.+.+... ....+++.+++++.++.+.++... + +...
T Consensus 263 --i~t~sK~~~-~G~~~G~~--~~~-----~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------~--~~~~ 324 (429)
T 4e77_A 263 --LTCLGKIIG-GGMPVGAF--GGR-----REVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEIS------Q--VGVY 324 (429)
T ss_dssp --EEEEEGGGG-TTSCCEEE--EEC-----HHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHT------S--TTHH
T ss_pred --eeeeccccc-CCCCeEEE--EEC-----HHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHH------h--cCHH
Confidence 348999999 79999998 565 4455545432 122344678888888887776221 0 1223
Q ss_pred HHHHHHHHHHHHHHHh----cCCCCCcccccCCceeEEecCC--C----------------HHHHHHhHhhccEEEcCCC
Q 015435 323 DRIISMRQQLFDALSA----RGTPGDWSHIIKQIGMFTFTGL--N----------------SEQVAFMTKEYHIYMTSDG 380 (407)
Q Consensus 323 ~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~--~----------------~~~~~~~l~~~gi~~~~gg 380 (407)
++++++++++.+.|++ .+ +....+..|.+.++.+ + .+.+.+.|.++||.+.+++
T Consensus 325 ~~~~~~~~~l~~~L~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~ 400 (429)
T 4e77_A 325 ETLTELTDSLATGLRHAAKEEN----IPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSA 400 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT----CCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSST
T ss_pred HHHHHHHHHHHHHHHHHHHhCC----CceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecC
Confidence 3344444444444433 34 2222222334444432 1 0333444445799999986
Q ss_pred --eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435 381 --RISMAG-LSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 381 --Ris~~~-~~~e~i~~~~~~l~~~l~~ 405 (407)
|+++.. .+++++++++++|++++++
T Consensus 401 ~~~~~~~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 401 FEAGFMSLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp TSCEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 555433 4889999999999998865
No 131
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.96 E-value=1.4e-27 Score=226.97 Aligned_cols=288 Identities=12% Similarity=0.105 Sum_probs=200.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC--hHHHHhhcCceeeEE
Q 015435 76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN--HPKVFTLAGLSVKTY 153 (407)
Q Consensus 76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~v 153 (407)
...++++.+++++ +.. .++++++ |+||++++.++++ ..+.+||+|+++.++|.+ +...++..|.+++.+
T Consensus 57 ~~~~l~~~la~~~-~~~----~~~~v~~--~~gg~~al~~~~~--~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~ 127 (393)
T 3kgw_A 57 IMEEIKQGIQYVF-QTR----NPLTLVV--SGSGHCAMETALF--NLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQM 127 (393)
T ss_dssp HHHHHHHHHHHHH-TCC----CSEEEEE--SCCTTTHHHHHHH--HHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHh-CCC----CCcEEEE--eCCcHHHHHHHHH--hcCCCCCEEEEEeCCchhHHHHHHHHHcCCceEEE
Confidence 4567888888887 432 1246889 9999999999853 447899999999888753 366778899999999
Q ss_pred EeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhH
Q 015435 154 RYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQ 233 (407)
Q Consensus 154 ~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~ 233 (407)
+. +.++.+|++++++.+.+. +++++++ ++|+||||.+++ +++|.++|++||+++|+|++|...... . +
T Consensus 128 ~~--~~~~~~d~~~l~~~i~~~-~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~g~~~-~--~-- 195 (393)
T 3kgw_A 128 IK--KPGEHYTLQEVEEGLAQH-KPVLLFL-VHGESSTGVVQP---LDGFGELCHRYQCLLLVDSVASLGGVP-I--Y-- 195 (393)
T ss_dssp EC--CTTCCCCHHHHHHHHHHH-CCSEEEE-ESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTTTTSC-C--C--
T ss_pred eC--CCCCCCCHHHHHHHHhhC-CCcEEEE-eccCCcchhhcc---HHHHHHHHHHcCCEEEEECCccccCcc-c--c--
Confidence 98 334579999999999831 5677777 889999999887 778888899999999999998632211 1 0
Q ss_pred HHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhh-----------------------ccc
Q 015435 234 SVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIR-----------------------PMY 290 (407)
Q Consensus 234 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~-----------------------~~~ 290 (407)
....+..+++.|+||.++ ++.++|++ +++ +++ .+.+..... ...
T Consensus 196 -----~~~~~~d~~~~s~sK~~~-~~~g~g~~--~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (393)
T 3kgw_A 196 -----MDQQGIDIMYSSSQKVLN-APPGISLI--SFN-DKA----KYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIH 262 (393)
T ss_dssp -----TTTTTCCEEEEESSSTTC-CCSSCEEE--EEC-HHH----HHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCC
T ss_pred -----hhhcCCCEEEecCccccc-CCCceeEE--EEC-HHH----HHHHhccCCCCCceeecHHHHHHhhhhccccCCCC
Confidence 011235688899999774 23448888 455 443 333332110 112
Q ss_pred CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC----CceeEEec----CCCH
Q 015435 291 SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK----QIGMFTFT----GLNS 362 (407)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~~~~~~~----~~~~ 362 (407)
.+++..++.++..+++... ...+++.+++++++++++.+.|++.+ +.+..+ ..+++.++ +.+.
T Consensus 263 ~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (393)
T 3kgw_A 263 HTTPVTSLYCLRESLALIA-----EQGLENCWRRHREATAHLHKHLQEMG----LKFFVKDPEIRLPTITTVTVPAGYNW 333 (393)
T ss_dssp CCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTT----CCBSSSSGGGBCSSEEEEECCTTBCH
T ss_pred CCCCHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHcC----CeeccCChhhcCCeEEEEeCCCCCCH
Confidence 3456666666655554221 12367888999999999999999886 444422 22344443 3355
Q ss_pred HHHH-HhHhhccEEEcCCC--------eEEe-cC-CCCCChhHHHHHHHHHHHhh
Q 015435 363 EQVA-FMTKEYHIYMTSDG--------RISM-AG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 363 ~~~~-~~l~~~gi~~~~gg--------Ris~-~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
+.+. .+++++||.+.+|. ||++ +. .+++++++++++|+++++++
T Consensus 334 ~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 388 (393)
T 3kgw_A 334 RDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHC 388 (393)
T ss_dssp HHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhh
Confidence 5544 55565599999852 9997 53 37899999999999999765
No 132
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.96 E-value=4.2e-28 Score=233.09 Aligned_cols=285 Identities=15% Similarity=0.171 Sum_probs=200.6
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh--hcCCCeEEecCCCCCChHHHHh---hcCcee
Q 015435 76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR--HYHQLTIYIPQPTWGNHPKVFT---LAGLSV 150 (407)
Q Consensus 76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~--~~~gd~Vi~~~p~y~~~~~~~~---~~G~~~ 150 (407)
...++++.+++++ +. ++++|++ |+|+++|+.++++.+.. ..+||+|+++.|+|+.+...+. ..|.++
T Consensus 69 ~~~~l~~~la~~~-~~-----~~~~v~~--~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~ 140 (423)
T 3lvm_A 69 AVDIARNQIADLV-GA-----DPREIVF--TSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEV 140 (423)
T ss_dssp HHHHHHHHHHHHH-TC-----CGGGEEE--ESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHc-CC-----CCCeEEE--eCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEE
Confidence 4578888899888 42 2479999 99999999999643321 1279999999999999887774 559999
Q ss_pred eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435 151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA 230 (407)
Q Consensus 151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~ 230 (407)
+.++.+ .++.+|++++++++. ++++++++ ++|+||||.+++ +++|+++|++||++||+|++|...... .
T Consensus 141 ~~v~~~--~~~~~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~-- 209 (423)
T 3lvm_A 141 TYLAPQ--RNGIIDLKELEAAMR--DDTILVSI-MHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLP-I-- 209 (423)
T ss_dssp EEECCC--TTSCCCHHHHHHHCC--TTEEEEEC-CSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC-C--
T ss_pred EEeccC--CCCccCHHHHHHhcC--CCcEEEEE-eCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCCC-c--
Confidence 999983 367789999999987 44555555 999999999998 777888899999999999998643321 1
Q ss_pred hhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh-------hcccCCCChhHHHHHHH
Q 015435 231 DAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI-------RPMYSSPPIHGASIVAT 303 (407)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 303 (407)
+ ....+..+++.|+||.+|.+| +|++ ++++ +. ...+.... .....+++...+.++..
T Consensus 210 ~-------~~~~~~di~~~s~sK~~g~~g--~G~~--~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 273 (423)
T 3lvm_A 210 D-------LSQLKVDLMSFSGHKIYGPKG--IGAL--YVRR-KP----RVRIEAQMHGGGHERGMRSGTLPVHQIVGMGE 273 (423)
T ss_dssp C-------TTTSCCSEEEEESTTTTSCSS--CEEE--EECB-TT----BCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHH
T ss_pred C-------hhhcCCCEEEechHHhcCCCC--eEEE--EEec-cc----cCCCCccccCCcccccccCCCCCHHHHHHHHH
Confidence 0 111245688999999887666 8898 4552 21 11122211 11223455556665555
Q ss_pred HhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCc----eeEE--ecCCCHHHHHHhHhhccEEEc
Q 015435 304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQI----GMFT--FTGLNSEQVAFMTKEYHIYMT 377 (407)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~l~~~gi~~~ 377 (407)
+++.. .+.+++.+++++++++++.+.|++++. +.+..+.+ +++. +.+.+.+.+...|.+ |.+.
T Consensus 274 al~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~v~ 342 (423)
T 3lvm_A 274 AYRIA------KEEMATEMERLRGLRNRLWNGIKDIEE---VYLNGDLEHGAPNILNVSFNYVEGESLIMALKD--LAVS 342 (423)
T ss_dssp HHHHH------HHHHHHHHHHHHHHHHHHHHHHTTSTT---EEEESCSTTBCTTEEEEEETTSCHHHHHHHTTT--EECB
T ss_pred HHHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCC---EEEeCCccccCCCeEEEEeCCCCHHHHHHHHhh--heec
Confidence 55422 234678889999999999999988732 55554432 2322 235567766666665 7776
Q ss_pred CC-------------------------C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 378 SD-------------------------G--RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 378 ~g-------------------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
+| + ||+++. .+++++++++++|+++++++
T Consensus 343 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~ 399 (423)
T 3lvm_A 343 SGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRL 399 (423)
T ss_dssp CCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 64 3 888874 46789999999999998754
No 133
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.96 E-value=1.5e-27 Score=228.32 Aligned_cols=291 Identities=11% Similarity=0.042 Sum_probs=202.8
Q ss_pred cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC--hHHHHhhcCceeeEEE
Q 015435 77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN--HPKVFTLAGLSVKTYR 154 (407)
Q Consensus 77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~v~ 154 (407)
..++++.+++++ +... ++.+++ |+|+++++.+++. ..+.+||+|++++|+|.+ +...++..|.+++.+|
T Consensus 48 ~~~~~~~la~~~-~~~~----~~~v~~--~~sgt~al~~~~~--~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 118 (411)
T 3nnk_A 48 MNEVMALYRGVF-RTEN----RWTMLV--DGTSRAGIEAILV--SAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIE 118 (411)
T ss_dssp HHHHHHHHHHHH-TCCC----SEEEEE--ESCHHHHHHHHHH--HHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHh-CCCC----CcEEEE--CCCcHHHHHHHHH--HhcCCCCEEEEecCCchHHHHHHHHHHcCCeEEEEe
Confidence 567788888887 4321 123777 9999999999953 447899999999999977 8888889999999999
Q ss_pred eecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHH
Q 015435 155 YYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQS 234 (407)
Q Consensus 155 ~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~ 234 (407)
. +.++.+|++++++.+.+. +++++++ ++|+||||.+.+ +++|+++|++||+++|+|+++...... . +
T Consensus 119 ~--~~~~~~d~~~l~~~i~~~-~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~--~--- 185 (411)
T 3nnk_A 119 V--PWGEVFTPDQVEDAVKRI-RPRLLLT-VQGDTSTTMLQP---LAELGEICRRYDALFYTDATASLGGNP-L--E--- 185 (411)
T ss_dssp C--CTTCCCCHHHHHHHHHHH-CCSEEEE-ESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTBTTBC-C--C---
T ss_pred c--CCCCCCCHHHHHHHHhhC-CCeEEEE-eCCCCCcceecc---HHHHHHHHHHcCCEEEEECCcccCCcc-c--c---
Confidence 8 445778999999999732 5677777 889999999877 778888899999999999997543221 1 0
Q ss_pred HHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHH----------------hh--------------
Q 015435 235 VRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQL----------------KL-------------- 284 (407)
Q Consensus 235 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~----------------~~-------------- 284 (407)
....+..+++.|++|.++ ++.++|++ +++ +++.+.+.... ..
T Consensus 186 ----~~~~~~d~~~~s~~K~l~-~~~g~g~~--~~~-~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~ 257 (411)
T 3nnk_A 186 ----TDVWGLDAVSAGMQKCLG-GPSGTSPI--TLS-ARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDY 257 (411)
T ss_dssp ----TTTTTCSEEECCSTTTTC-CCSSEEEE--EEC-HHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHH
T ss_pred ----hhccCCcEEEecCccccC-CCCceEEE--EEC-HHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhh
Confidence 011235688999999754 33468888 455 44443333211 00
Q ss_pred --hhhcccCCCChhHHHHHHHHhcChhhHHhHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCc---eeEEec
Q 015435 285 --VIRPMYSSPPIHGASIVATILKDSTMYKEWTLE-LKAMADRIISMRQQLFDALSARGTPGDWSHIIKQI---GMFTFT 358 (407)
Q Consensus 285 --~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~ 358 (407)
.......+++...+.++..+++.. .+. +++.+++++++++++.+.|++.+ +.+..+.+ +.+.++
T Consensus 258 ~~~~~~~~~~~~~~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~ 327 (411)
T 3nnk_A 258 WGPERLNHHTEATTALFGARECARLI------LQEGLDYGIARHKLHGDALVKGIQAMG----LETFGDLKHKMNNVLGV 327 (411)
T ss_dssp HSTTCCCCSCCCHHHHHHHHHHHHHH------HHHCHHHHHHHHHHHHHHHHHHHHHTT----CCBCSCGGGBCSSEEEE
T ss_pred hccccCCCCCCCHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHcC----CEeCCCcccccccEEEE
Confidence 001112345555666655555422 133 67888999999999999999886 45443332 334433
Q ss_pred ----CCCHHHHH-HhHhhccEEEcCC------C--eEEe-cC-CCCCChhHHHHHHHHHHHhhC
Q 015435 359 ----GLNSEQVA-FMTKEYHIYMTSD------G--RISM-AG-LSSKTVPHLTDAIHAAVTRMG 407 (407)
Q Consensus 359 ----~~~~~~~~-~~l~~~gi~~~~g------g--Ris~-~~-~~~e~i~~~~~~l~~~l~~~~ 407 (407)
+.+.+.+. .+++++||.+.+| + ||++ +. .+++++++++++|++++++++
T Consensus 328 ~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 328 VIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK 391 (411)
T ss_dssp ECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 34565554 5556669999875 1 9997 53 367999999999999998653
No 134
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.96 E-value=2.5e-27 Score=227.12 Aligned_cols=317 Identities=14% Similarity=0.096 Sum_probs=212.8
Q ss_pred cccchhHHHHHHHHhccccccccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceE-EeecCCcccHHHHHHHHHHhhc
Q 015435 48 PLVLNVVRKAEQLLVNDQSRVKEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVT-TVQCLSGTGSLRVGAEFLARHY 124 (407)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~-~~~t~g~t~a~~~~~~~~~~~~ 124 (407)
|.|.+...++.+.+. ......|.+ .....++++.+++++ +. ++++++ + ++|+++++.+++ ...+.
T Consensus 17 p~p~~~~~~v~~a~~--~~~~~~~~~~~~~~~~~l~~~la~~~-g~-----~~~~~~~~--~~s~t~al~~~~--~~l~~ 84 (416)
T 3isl_A 17 PGPVEVDPRVLRVMS--TPVVGQFDPAFTGIMNETMEMLRELF-QT-----KNRWAYPI--DGTSRAGIEAVL--ASVIE 84 (416)
T ss_dssp SSSCCCCHHHHHHTT--SCCCCTTSHHHHHHHHHHHHHHHHHT-TC-----CCSEEEEE--ESCHHHHHHHHH--HHHCC
T ss_pred CCCcCcCHHHHHHhc--ccCCCCccHHHHHHHHHHHHHHHHHh-CC-----CCCcEEEe--cCcHHHHHHHHH--HHhcC
Confidence 445555566666665 222223322 233667788888877 42 234454 7 899999999995 44478
Q ss_pred CCCeEEecCCCCCC--hHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHH
Q 015435 125 HQLTIYIPQPTWGN--HPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQ 202 (407)
Q Consensus 125 ~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~ 202 (407)
+||+|++++|+|++ +...++..|.+++.++.+ .++.+|++++++++.+ ++++++++ ++|+||||.+.+ +++
T Consensus 85 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~-~~~~~v~~-~~~~nptG~~~~---l~~ 157 (416)
T 3isl_A 85 PEDDVLIPIYGRFGYLLTEIAERYGANVHMLECE--WGTVFDPEDIIREIKK-VKPKIVAM-VHGETSTGRIHP---LKA 157 (416)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHH-HCCSEEEE-ESEETTTTEECC---CHH
T ss_pred CCCEEEEecCCcccHHHHHHHHhcCCeeEEEecC--CCCCCCHHHHHHHHhh-CCCcEEEE-EccCCCCceecC---HHH
Confidence 99999999999987 677888999999999983 4467899999999973 24677766 899999999887 778
Q ss_pred HHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHH
Q 015435 203 IRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQL 282 (407)
Q Consensus 203 i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~ 282 (407)
|+++|++||+++|+|++++..... . + ....+..+++.|++|.++ ++.++|++ +++ +++.+.+....
T Consensus 158 i~~l~~~~~~~li~D~a~~~~~~~-~--~-------~~~~~~d~~~~s~~K~l~-g~~g~g~~--~~~-~~~~~~~~~~~ 223 (416)
T 3isl_A 158 IGEACRTEDALFIVDAVATIGGCE-V--K-------VDEWKIDAAIGGTQKCLS-VPSGMAPI--TYN-ERVADVIAARK 223 (416)
T ss_dssp HHHHHHHTTCEEEEECTTTTTTSC-C--C-------TTTTTCSEEECCSSSTTC-CCSSEEEE--EEC-HHHHHHHHTC-
T ss_pred HHHHHHHcCCEEEEECCccccCCC-c--c-------hhhcCCCEEEecCccccC-CCCCeEEE--EEC-HHHHHHhhccc
Confidence 888899999999999997633321 1 1 011235688999999754 33457888 454 44444333100
Q ss_pred -------------------------------h---hhhhcccCCCChhHHHHHHHHhcChhhHHhHHHH-HHHHHHHHHH
Q 015435 283 -------------------------------K---LVIRPMYSSPPIHGASIVATILKDSTMYKEWTLE-LKAMADRIIS 327 (407)
Q Consensus 283 -------------------------------~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~ 327 (407)
. ........+++...+.++..+++.. .+. +++.++++++
T Consensus 224 ~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~------~~~g~~~~~~~~~~ 297 (416)
T 3isl_A 224 KVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLV------LEEGLETRFERHRH 297 (416)
T ss_dssp -----------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHH------HHHCHHHHHHHHHH
T ss_pred cccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH------HHhhHHHHHHHHHH
Confidence 0 0011112245666666665555432 133 6788899999
Q ss_pred HHHHHHHHHHhcCCCCCcccccCCc---eeEEec----CCCHHHHH-HhHhhccEEEcCC------C--eEEecC-CCCC
Q 015435 328 MRQQLFDALSARGTPGDWSHIIKQI---GMFTFT----GLNSEQVA-FMTKEYHIYMTSD------G--RISMAG-LSSK 390 (407)
Q Consensus 328 ~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~-~~l~~~gi~~~~g------g--Ris~~~-~~~e 390 (407)
+++++.+.|++.+ +.+..+.+ +.+.++ +.+.+.+. .+++++||.+.+| + ||++.. .+++
T Consensus 298 ~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~ 373 (416)
T 3isl_A 298 HEAALAAGIKAMG----LRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRK 373 (416)
T ss_dssp HHHHHHHHHHHTT----CCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSH
T ss_pred HHHHHHHHHHHcC----CEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcH
Confidence 9999999999876 55554432 233333 34555554 5556569999875 1 999832 4666
Q ss_pred C-hhHHHHHHHHHHHhhC
Q 015435 391 T-VPHLTDAIHAAVTRMG 407 (407)
Q Consensus 391 ~-i~~~~~~l~~~l~~~~ 407 (407)
+ +++++++|++++++++
T Consensus 374 e~i~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 374 ENVLFVLAGLEAVLLRHN 391 (416)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 6 9999999999998753
No 135
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.96 E-value=1.2e-27 Score=226.55 Aligned_cols=316 Identities=14% Similarity=0.107 Sum_probs=212.8
Q ss_pred cccchhHHHHHHHHhccccccc-cCCC----CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh
Q 015435 48 PLVLNVVRKAEQLLVNDQSRVK-EYLP----IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR 122 (407)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~-~y~~----~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~ 122 (407)
+.++.+++++.+.+.+.....+ .|.. .....++++.+++++ +. +++++++ |+|+++++.+++..+..
T Consensus 11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~-----~~~~v~~--~~g~t~a~~~~~~~l~~ 82 (382)
T 4eb5_A 11 PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLV-NG-----GGGTVVF--TSGATEANNLAIIGYAM 82 (382)
T ss_dssp CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHH-TC-----TTEEEEE--ESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHh-CC-----CCCeEEE--cCchHHHHHHHHHHHHh
Confidence 4456666666666641001111 1422 235788899999988 42 2468999 99999999999644421
Q ss_pred --hcCCCeEEecCCCCCChHHHHh---hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCH
Q 015435 123 --HYHQLTIYIPQPTWGNHPKVFT---LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTL 197 (407)
Q Consensus 123 --~~~gd~Vi~~~p~y~~~~~~~~---~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~ 197 (407)
..+||+|++++|+|+.+...+. ..|++++.++++ .++.+|++++++.+. ++++++++ ++|+||||.+++
T Consensus 83 ~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~- 156 (382)
T 4eb5_A 83 RNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--KYGEVDVSFIDQKLR--DDTILVSV-QHANNEIGTIQP- 156 (382)
T ss_dssp HHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBC--TTSCBCHHHHHHHCC--TTEEEEEC-CSBCTTTCBBCC-
T ss_pred hccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccC--CCCccCHHHHHHHhc--CCCeEEEE-eccCCCccccCC-
Confidence 1689999999999998877665 479999999983 356789999999987 44555555 999999999987
Q ss_pred HHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHH
Q 015435 198 EQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASR 277 (407)
Q Consensus 198 ~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~ 277 (407)
+++|+++|++||++ |+|++|.. ..... .+..+ +..++++|+||.+|++| +|++ +++++. .
T Consensus 157 --l~~i~~l~~~~~~~-i~D~a~~~-g~~~~-----~~~~~----~~di~~~s~sK~~g~~g--~G~~--~~~~~~---~ 216 (382)
T 4eb5_A 157 --VEEISEVLAGKAAL-HIDATASV-GQIEV-----DVEKI----GADMLTISSNDIYGPKG--VGAL--WIRKEA---K 216 (382)
T ss_dssp --HHHHHHHHTTSSEE-EEECTTTB-TTBCC-----CHHHH----TCSEEEEETGGGTCCSS--CEEE--EEETTC---C
T ss_pred --HHHHHHHHHHCCCE-EEEcchhc-CCccc-----Ccccc----CCCEEEeehHHhcCCCc--eEEE--EEcccc---c
Confidence 67888889999999 99999872 21111 12111 34688999999887656 6888 566431 1
Q ss_pred HHHHHhh---hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC---
Q 015435 278 VESQLKL---VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ--- 351 (407)
Q Consensus 278 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--- 351 (407)
+...+.. .......+++...+.++..+++.. .+.+++.+++++++++++.+.|++++. +.+..+.
T Consensus 217 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~ 287 (382)
T 4eb5_A 217 LQPVILGGGQENGLRSGSENVPSIVGFGKAAEIT------AMEWREEAERLRRLRDRIIDNVLKIEE---SYLNGHPEKR 287 (382)
T ss_dssp CCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHTTSTT---EEECSCSSSB
T ss_pred cCceecCCCccccccCCCccHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHhhCCC---eEEeCCcccC
Confidence 1111100 011122345555555555555422 234677888999999999999988632 5555443
Q ss_pred -ceeEEe--cCCCHHHHHHhHhhccEEEcCC-------------------------C--eEEecC-CCCCChhHHHHHHH
Q 015435 352 -IGMFTF--TGLNSEQVAFMTKEYHIYMTSD-------------------------G--RISMAG-LSSKTVPHLTDAIH 400 (407)
Q Consensus 352 -~~~~~~--~~~~~~~~~~~l~~~gi~~~~g-------------------------g--Ris~~~-~~~e~i~~~~~~l~ 400 (407)
++++.+ .+.+.+.+.+.|.++||.+.+| + ||+++. .+++++++++++|+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 367 (382)
T 4eb5_A 288 LPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLP 367 (382)
T ss_dssp CTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 334332 2456666666666789998764 2 899874 47899999999999
Q ss_pred HHHHhh
Q 015435 401 AAVTRM 406 (407)
Q Consensus 401 ~~l~~~ 406 (407)
++++++
T Consensus 368 ~~~~~~ 373 (382)
T 4eb5_A 368 GVIERL 373 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 136
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.95 E-value=5.7e-27 Score=223.94 Aligned_cols=327 Identities=14% Similarity=0.050 Sum_probs=218.1
Q ss_pred CeeeeeeeeeecCCCccccchhHHHHHHHHhccccc-cccCC----CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435 32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSR-VKEYL----PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC 106 (407)
Q Consensus 32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~----~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t 106 (407)
+.+.|..+.. + +.++.+.+++.+.+...... ...|. ...+..++++.+++++ +. ++++|++ |
T Consensus 26 ~~~~ld~~~~----~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~-----~~~~v~~--~ 92 (406)
T 3cai_A 26 GWVHFDAPAG----M-LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLV-NA-----DPGGVVL--G 92 (406)
T ss_dssp SCEECBGGGC----C-CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHH-TC-----CGGGEEE--E
T ss_pred CeEEEeCCCc----C-CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHh-CC-----CCCeEEE--e
Confidence 4666666652 2 55666777766666411101 11232 2346788999999998 43 2478999 9
Q ss_pred CCcccHHHHHHHHHH-hhcCCCeEEecCCCCCChHHHHhh----cCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEE
Q 015435 107 LSGTGSLRVGAEFLA-RHYHQLTIYIPQPTWGNHPKVFTL----AGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIV 181 (407)
Q Consensus 107 ~g~t~a~~~~~~~~~-~~~~gd~Vi~~~p~y~~~~~~~~~----~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v 181 (407)
+|+|+++.+++..+. .+.+||+|+++.|+|..+...+.. .|.+++.++++ +.++.+|++++++.+. ++++++
T Consensus 93 ~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~-~~~~~~d~~~l~~~l~--~~~~~v 169 (406)
T 3cai_A 93 ADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVD-IETGELPTWQWESLIS--KSTRLV 169 (406)
T ss_dssp SCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCC-TTTCCCCGGGHHHHCC--TTEEEE
T ss_pred CChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecC-cccCCcCHHHHHHHhC--CCceEE
Confidence 999999999843221 257999999999999987766554 79999999983 3456789999999986 456666
Q ss_pred EEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC
Q 015435 182 LLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER 261 (407)
Q Consensus 182 ~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 261 (407)
++ ++|+||||.+++ +++|+++|+++|+++|+|++|..... .. + +..+ +..+++.|+||.+| ++
T Consensus 170 ~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~-~~--~---~~~~----~~d~~~~s~~K~~g-~~-- 232 (406)
T 3cai_A 170 AV-NSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPYR-LL--D---IRET----DADVVTVNAHAWGG-PP-- 232 (406)
T ss_dssp EE-ESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTTC-CC--C---HHHH----CCSEEEEEGGGGTS-CS--
T ss_pred EE-eCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccCCC-CC--C---chhc----CCCEEEeehhhhcC-CC--
Confidence 66 899999999887 67888889999999999999873221 11 1 1111 35688999999876 44
Q ss_pred cc-eeEEeecChhhHHHHHHHHhhhhh---------cccCCCChhHHHHHHHHhcChh---------hHHhHHHHHHHHH
Q 015435 262 VG-ALSIVCKTEDVASRVESQLKLVIR---------PMYSSPPIHGASIVATILKDST---------MYKEWTLELKAMA 322 (407)
Q Consensus 262 ~G-~~~~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~ 322 (407)
+| ++ +++ + .+.+.+..... ....+++...+.++..+++... ...+|.+++++.+
T Consensus 233 ~G~~~--~~~-~----~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~ 305 (406)
T 3cai_A 233 IGAMV--FRD-P----SVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSAD 305 (406)
T ss_dssp CEEEE--ESC-H----HHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHH
T ss_pred cCeEE--EEe-h----HHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHH
Confidence 88 88 465 3 34444433211 1123455555544444443111 1123444678888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcccccC---CceeEEec--CCCHHHHHHhHhhccEEEcCC---------------C--
Q 015435 323 DRIISMRQQLFDALSARGTPGDWSHIIK---QIGMFTFT--GLNSEQVAFMTKEYHIYMTSD---------------G-- 380 (407)
Q Consensus 323 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~l~~~gi~~~~g---------------g-- 380 (407)
++++++++++.+.|++.+. +.+..+ .++++.+. +.+.+.+.+.|.++||.+.+| +
T Consensus 306 ~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~i 382 (406)
T 3cai_A 306 AYLNRVFDYLMVSLRSLPL---VMLIGRPEAQIPVVSFAVHKVPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAV 382 (406)
T ss_dssp HHHHHHHHHHHHHHHTCTT---EEECCCCSSBCSEEEEEETTBCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCE
T ss_pred HHHHHHHHHHHHHHhcCCC---eEEcCCccccCCEEEEEECCcCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeE
Confidence 9999999999999988632 555444 24433221 345666666666789998753 3
Q ss_pred eEEecC-CCCCChhHHHHHHHH
Q 015435 381 RISMAG-LSSKTVPHLTDAIHA 401 (407)
Q Consensus 381 Ris~~~-~~~e~i~~~~~~l~~ 401 (407)
||+++. .+++++++++++|++
T Consensus 383 Ris~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 383 TVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp EEECCTTCCHHHHHHHHHHHHT
T ss_pred EEEeecCCCHHHHHHHHHHHHH
Confidence 898875 367889999988875
No 137
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.95 E-value=1.4e-27 Score=231.38 Aligned_cols=342 Identities=11% Similarity=0.031 Sum_probs=213.9
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
..++++|||+.|.+..+.| +.++.+++++.+++. .......+.+.....++++.+++++ +. ..+ |++ |+
T Consensus 46 ~~g~~~lD~~~~~~~~~lG-~~~p~v~~A~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~-~~-----~~~-v~~--~~ 114 (452)
T 3n5m_A 46 IQGKRYLDGMSGLWCVNSG-YGRKELAEAAYKQLQ-TLSYFPMSQSHEPAIKLAEKLNEWL-GG-----EYV-IFF--SN 114 (452)
T ss_dssp TTCCEEEETTHHHHTCTTC-BCCHHHHHHHHHHHT-TCCCCCTTSEEHHHHHHHHHHHHHH-TS-----CEE-EEE--ES
T ss_pred CCCCEEEECCcchhhccCC-CCCHHHHHHHHHHHH-hcCCcccccCCHHHHHHHHHHHHhC-CC-----Cce-EEE--eC
Confidence 4568999999997655677 567788888888775 1111111122333455666666655 21 124 888 99
Q ss_pred CcccHHHHHHHHHHhh---c---CCCeEEecCCCCCChHHHHhhcCce-------------eeEEEeecCCCCCc-C---
Q 015435 108 SGTGSLRVGAEFLARH---Y---HQLTIYIPQPTWGNHPKVFTLAGLS-------------VKTYRYYDPATRGL-N--- 164 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~---~---~gd~Vi~~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~~-d--- 164 (407)
||++|++.+++++... . ++++|++.+|+|+++.......+.. +..++..+...... |
T Consensus 115 ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (452)
T 3n5m_A 115 SGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIEREN 194 (452)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSC
T ss_pred chHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchh
Confidence 9999999997666433 4 6789999999999887655544332 22333211100111 1
Q ss_pred ------hhhHHHHHH-cCCCCcEEEEecCC-CCCCCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHH
Q 015435 165 ------FQGLLEDLR-AAPSGAIVLLHACA-HNPTGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSV 235 (407)
Q Consensus 165 ------~~~l~~~i~-~~~~~~~v~i~~~p-~NPtG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~ 235 (407)
+++|++.+. ..+.+..++++.++ +| ||.+. +.+++++|+++|++||++||+||+|.+|+..+. ....
T Consensus 195 ~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~~~ 270 (452)
T 3n5m_A 195 IYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK---AFGF 270 (452)
T ss_dssp GGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc---cchh
Confidence 788998886 22233344443666 89 99765 888899999999999999999999999876542 1111
Q ss_pred HHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhh------hhhcccCCCChhHHHHHHHHhcCh
Q 015435 236 RMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKL------VIRPMYSSPPIHGASIVATILKDS 308 (407)
Q Consensus 236 ~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~ 308 (407)
...+...-+.+|||.++. | +|+||+ +++ +++.+.+.. .....+++.+++++.++.++++..
T Consensus 271 ----~~~~~~~di~t~sK~l~~-G~~~ig~~--~~~-----~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~ 338 (452)
T 3n5m_A 271 ----MNYDVKPDIITMAKGITS-AYLPLSAT--AVK-----REIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEII 338 (452)
T ss_dssp ----GGTTCCCSEEEECGGGGT-TSSCCEEE--EEE-----HHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHH
T ss_pred ----hhcCCCCCEEeecccccC-CCcceEEE--EEC-----HHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHH
Confidence 111111113368999995 9 999999 566 556555532 122345578888999888887633
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCcccccCCceeEEec---C-C-----CH---HHHHHhHhhccE
Q 015435 309 TMYKEWTLELKAMADRIISMRQQLFDALSAR--GTPGDWSHIIKQIGMFTFT---G-L-----NS---EQVAFMTKEYHI 374 (407)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~---~-~-----~~---~~~~~~l~~~gi 374 (407)
. + +...++++++.+++.+.|+++ ..+ .+....+.+.++.+. . . +. ..+...+.++||
T Consensus 339 ~------~--~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 409 (452)
T 3n5m_A 339 E------N--ENLIERSAQMGSLLLEQLKEEIGEHP-LVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGL 409 (452)
T ss_dssp H------H--TTHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTE
T ss_pred H------h--ccHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCc
Confidence 1 1 233455555666666665543 111 133444555544322 1 0 11 234444555899
Q ss_pred EEcCCC----------eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435 375 YMTSDG----------RISMAG-LSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 375 ~~~~gg----------Ris~~~-~~~e~i~~~~~~l~~~l~~ 405 (407)
.+.|++ ||+++. .+++++++++++|++++++
T Consensus 410 ~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 410 IIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp ECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 998752 776443 4889999999999999865
No 138
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.95 E-value=1.7e-27 Score=229.75 Aligned_cols=331 Identities=13% Similarity=0.041 Sum_probs=212.9
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
..++.+|||+.|.+..+.| +.++.+++++.+++. ......| +.....++++.+++++ + ..+++++ |+
T Consensus 53 ~~g~~~lD~~~~~~~~~lG-~~~~~v~~a~~~~~~--~~~~~~~-~~~~~~~l~~~la~~~-~------~~~~v~~--~~ 119 (434)
T 2epj_A 53 VDGARIVDLVLAYGPLILG-HKHPRVLEAVEEALA--RGWLYGA-PGEAEVLLAEKILGYV-K------RGGMIRF--VN 119 (434)
T ss_dssp TTCCEEEESSGGGTTCTTC-BTCHHHHHHHHHHHH--TCSCCSS-CCHHHHHHHHHHHHHH-C------TTCEEEE--ES
T ss_pred CCCCEEEEcccchhcccCC-CCCHHHHHHHHHHHH--hCCCCCC-CCHHHHHHHHHHHHhC-C------CCCEEEE--eC
Confidence 3567899999997543455 456677777777775 2222233 3334566777777766 2 1378999 99
Q ss_pred CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-h-------------cCc------eeeEEEeecCCCCCcChhh
Q 015435 108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-L-------------AGL------SVKTYRYYDPATRGLNFQG 167 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~-------------~G~------~~~~v~~~~~~~~~~d~~~ 167 (407)
||++|+++++++...+.+++.|++.+|+|+++..... . .|+ ++..++. .|+++
T Consensus 120 sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~ 192 (434)
T 2epj_A 120 SGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEA 192 (434)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHH
T ss_pred CHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHH
Confidence 9999999997654445577899999999988655332 1 232 2333432 38899
Q ss_pred HHHHHHcCCCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEE
Q 015435 168 LLEDLRAAPSGAIVLLHACAHNPTGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECL 246 (407)
Q Consensus 168 l~~~i~~~~~~~~v~i~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i 246 (407)
+++.+.+.+.+..++++...+||||.+. +++.+++|.++|++||++||+||+|.++ ..+ .......+ ....+
T Consensus 193 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g---~~~~~~~~-~~~~d-- 265 (434)
T 2epj_A 193 LERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLG---LEGAQGYF-NIEGD-- 265 (434)
T ss_dssp HHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSS---TTHHHHHH-TCCCS--
T ss_pred HHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCC---cchhhHHh-CCCCC--
Confidence 9998874222333344244456799865 7999999999999999999999999987 322 12222222 11222
Q ss_pred EEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh---hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435 247 VAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI---RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMAD 323 (407)
Q Consensus 247 ~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (407)
+.||||.++. |+|+||+ +++ +++.+.+.... ...+++.+++++.++..+++... + ++..+
T Consensus 266 -i~s~sK~l~~-G~~~G~v--~~~-----~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~------~--~~~~~ 328 (434)
T 2epj_A 266 -IIVLGKIIGG-GFPVGAV--AGS-----REVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALE------E--EPVYS 328 (434)
T ss_dssp -EEEEEGGGGT-TSSCEEE--EEC-----HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHH------H--SCHHH
T ss_pred -eeeecchhcC-Ccceeee--eec-----HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHH------h--cCHHH
Confidence 3488999995 9999999 566 44555444311 12334677888888877775321 1 24456
Q ss_pred HHHHHHHHHHHHHHhc----CCCCCcccccCCceeEEecCCC-----------------HHHHHHhHhhccEEEcCCC--
Q 015435 324 RIISMRQQLFDALSAR----GTPGDWSHIIKQIGMFTFTGLN-----------------SEQVAFMTKEYHIYMTSDG-- 380 (407)
Q Consensus 324 ~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gi~~~~gg-- 380 (407)
+++++++++.+.|+++ +. .....+.+. +.|+.+. .+.+...|.++||.+.+++
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 404 (434)
T 2epj_A 329 VSREAAKALEEAASEVLDRTGL---PYTINRVES-MMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLE 404 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---CEEEEEETT-EEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTS
T ss_pred HHHHHHHHHHHHHHHHHhhCCC---cEEEEEeee-EEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCCC
Confidence 6667777777777654 42 112333444 4444321 2234444456899999986
Q ss_pred eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 381 RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 381 Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
|+.+.. .+++++++++++|+++++++
T Consensus 405 ~~~~~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 405 AVFTGLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp CEECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred cEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 554432 48899999999999998753
No 139
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.95 E-value=6.5e-28 Score=233.52 Aligned_cols=342 Identities=10% Similarity=0.040 Sum_probs=211.8
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
..++++|||+.|.+..+.| +.++.+++++.+++. .. ..|.+..+..+.+.++++.+...... ...+++++ |+
T Consensus 58 ~~g~~ylD~~~~~~~~~lG-h~~p~v~~A~~~~~~--~~--~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~~v~~--~~ 129 (451)
T 3oks_A 58 VDGNRLIDLGSGIAVTTVG-NSAPKVVEAVRSQVG--DF--THTCFMVTPYEGYVAVCEQLNRLTPV-RGDKRSAL--FN 129 (451)
T ss_dssp TTSCEEEESSHHHHTCTTC-TTCHHHHHHHHHHHT--TC--SCCTTTTSCCHHHHHHHHHHHHHSSC-CSSEEEEE--ES
T ss_pred CCCCEEEEcCCCccccccC-CCCHHHHHHHHHHHH--hc--ccccCCccCCHHHHHHHHHHHHhCCc-CCCCEEEE--eC
Confidence 3568899999997666677 567788888888875 21 22433334344444444444221110 01368999 99
Q ss_pred CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCc--------------eeeEEEeecC--------CCCC---
Q 015435 108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL--------------SVKTYRYYDP--------ATRG--- 162 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~--------------~~~~v~~~~~--------~~~~--- 162 (407)
||++|++.++++......++.|++.+++|+++.......+. .+..++...+ +..+
T Consensus 130 sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 209 (451)
T 3oks_A 130 SGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGE 209 (451)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHH
T ss_pred cHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhH
Confidence 99999999976654444568999999999987765543322 3455554200 0001
Q ss_pred cChhhHHHHHHc--CCCCcEEEEecCCCCCCCC--CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHH
Q 015435 163 LNFQGLLEDLRA--APSGAIVLLHACAHNPTGV--DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF 238 (407)
Q Consensus 163 ~d~~~l~~~i~~--~~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~ 238 (407)
.+++.+++.+.+ .+.+.++++ ..|.|++|. ..+.+.+++|+++|++||++||+||+|.+|++.+. ......+
T Consensus 210 ~~~~~~~~~l~~~~~~~~~aavi-~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~~ 285 (451)
T 3oks_A 210 LAAKRAITVIDKQIGADNLAAVV-IEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA---MFACEHE 285 (451)
T ss_dssp HHHHHHHHHHHHHTCGGGEEEEE-ECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGGG
T ss_pred HHHHHHHHHHHhhcCCCCEEEEE-EcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc---chhhhhc
Confidence 124444455542 123444455 566676653 35777899999999999999999999998876542 1111111
Q ss_pred HHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHH
Q 015435 239 VADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLEL 318 (407)
Q Consensus 239 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 318 (407)
....++ .||||.++. |+|+||+ +++ +++.+.+.......+++.+++++.++.++++... +
T Consensus 286 -~~~pdi---~t~sK~l~~-G~~iG~v--~~~-----~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------~-- 345 (451)
T 3oks_A 286 -GIDPDL---IVTAKGIAG-GLPLSAV--TGR-----AEIMDSPHVSGLGGTYGGNPIACAAALATIETIE------S-- 345 (451)
T ss_dssp -TCCCSE---EEECGGGGT-TSSCEEE--EEE-----HHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHH------H--
T ss_pred -CCCCCe---eeehhhhhC-CcceEEE--EEC-----HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHh------h--
Confidence 111222 389999985 9999999 566 5566656554455566888999998888876321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHh----cCCCCCcccccCCceeEEecCC--------C---HHHHHHhHhhccEEEcCCC---
Q 015435 319 KAMADRIISMRQQLFDALSA----RGTPGDWSHIIKQIGMFTFTGL--------N---SEQVAFMTKEYHIYMTSDG--- 380 (407)
Q Consensus 319 ~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~l~~~gi~~~~gg--- 380 (407)
+...++++++.+++.+.|++ .+. +....+.|. +.++.+ + ...+.+.+.++||.+.|++
T Consensus 346 ~~~~~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~ 421 (451)
T 3oks_A 346 EGLVARAQQIEKIMKDRLGRLQAEDDR---IGDVRGRGA-MIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYG 421 (451)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCTT---EEEEEEETT-EEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCC---eEEEEEeeE-EEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCCC
Confidence 12334444455555554443 331 333344444 443322 1 2334445556899998864
Q ss_pred ---eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435 381 ---RISMAG-LSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 381 ---Ris~~~-~~~e~i~~~~~~l~~~l~~ 405 (407)
||+++. .+++++++++++|++++++
T Consensus 422 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 422 NVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 776553 4789999999999999864
No 140
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.95 E-value=2.7e-27 Score=223.98 Aligned_cols=314 Identities=13% Similarity=0.102 Sum_probs=209.9
Q ss_pred cccchhHHHHHHHHhccccccc-cCC----CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh
Q 015435 48 PLVLNVVRKAEQLLVNDQSRVK-EYL----PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR 122 (407)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~-~y~----~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~ 122 (407)
+.++.+++++.+.+.+...... .|. ......++++.+++++ +. +++++++ |+|+++++.+++..+
T Consensus 11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~-----~~~~i~~--~~g~~~a~~~~~~~~-- 80 (382)
T 4hvk_A 11 PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLV-NG-----GGGTVVF--TSGATEANNLAIIGY-- 80 (382)
T ss_dssp CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHT-TC-----TTEEEEE--ESSHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHc-CC-----CcCeEEE--ECCchHHHHHHHHHh--
Confidence 4455666666666641100000 111 1123457778888876 42 3468999 999999999985433
Q ss_pred h----cCCCeEEecCCCCCChHHHHhh---cCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCC
Q 015435 123 H----YHQLTIYIPQPTWGNHPKVFTL---AGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDP 195 (407)
Q Consensus 123 ~----~~gd~Vi~~~p~y~~~~~~~~~---~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~ 195 (407)
. .+||+|+++.++|+.+...+.. .|++++.++.+ .++.+|++++++.+. ++++++++ ++|+||||.+.
T Consensus 81 ~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~ 155 (382)
T 4hvk_A 81 AMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--KYGEVDVSFIDQKLR--DDTILVSV-QHANNEIGTIQ 155 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBC--TTSCBCHHHHHHHCC--TTEEEEEC-CSBCTTTCBBC
T ss_pred hhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccC--CCCCcCHHHHHHHhc--cCceEEEE-ECCCCCceeeC
Confidence 4 7999999999999988776554 69999999983 456799999999987 45555555 99999999988
Q ss_pred CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhH
Q 015435 196 TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVA 275 (407)
Q Consensus 196 ~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~ 275 (407)
+ +++|+++|++||+ +|+|++|...... . + ... .+..+++.|+||.+|.+| +|++ +++++.
T Consensus 156 ~---~~~i~~l~~~~~~-li~D~a~~~~~~~-~--~---~~~----~~~d~~~~s~~K~~g~~g--~g~~--~~~~~~-- 215 (382)
T 4hvk_A 156 P---VEEISEVLAGKAA-LHIDATASVGQIE-V--D---VEK----IGADMLTISSNDIYGPKG--VGAL--WIRKEA-- 215 (382)
T ss_dssp C---HHHHHHHHSSSSE-EEEECTTTBTTBC-C--C---HHH----HTCSEEEEESGGGTSCTT--CEEE--EEETTC--
T ss_pred C---HHHHHHHHHHcCE-EEEEhHHhcCCCC-C--C---chh----cCCCEEEEeHHHhcCCCc--eEEE--EEcCcc--
Confidence 7 6688888999999 9999987633221 1 1 111 134688999999877555 6777 344321
Q ss_pred HHHHHHHhh---hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCc
Q 015435 276 SRVESQLKL---VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQI 352 (407)
Q Consensus 276 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 352 (407)
.+...+.. .......+++...+.++..+++.. .+.+++.+++++++++++.+.|++++. +.+..+.+
T Consensus 216 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~ 285 (382)
T 4hvk_A 216 -KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEIT------AMEWREEAERLRRLRDRIIDNVLKIEE---SYLNGHPE 285 (382)
T ss_dssp -CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHTTSTT---EEECSCSS
T ss_pred -CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHhcCCC---eEEeCCcc
Confidence 11110000 011112344556666665555422 245778889999999999999987642 55544332
Q ss_pred ----eeEEe--cCCCHHHHHHhHhhccEEEcCC-------------------------C--eEEecC-CCCCChhHHHHH
Q 015435 353 ----GMFTF--TGLNSEQVAFMTKEYHIYMTSD-------------------------G--RISMAG-LSSKTVPHLTDA 398 (407)
Q Consensus 353 ----~~~~~--~~~~~~~~~~~l~~~gi~~~~g-------------------------g--Ris~~~-~~~e~i~~~~~~ 398 (407)
+++.+ .+.+.+.+.+.|.++||.+.+| + ||+++. .+++++++++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~ 365 (382)
T 4hvk_A 286 KRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEV 365 (382)
T ss_dssp SBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHH
Confidence 23322 2556777777777789999864 2 888874 467899999999
Q ss_pred HHHHHHhh
Q 015435 399 IHAAVTRM 406 (407)
Q Consensus 399 l~~~l~~~ 406 (407)
|+++++++
T Consensus 366 l~~~~~~~ 373 (382)
T 4hvk_A 366 LPGVIERL 373 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 141
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.95 E-value=1e-27 Score=232.96 Aligned_cols=344 Identities=11% Similarity=0.019 Sum_probs=219.2
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCC----cHHHHHHHHHHHhCCCCCCCCCCceEE
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVG----LVDFNKLSAKLILGADSPAIKDNRVTT 103 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g----~~~l~~~~a~~~~~~~~~~~~~~~i~~ 103 (407)
..++++|||+.|.+..+.| ..++.+++++.+++. .. .+.|....+ ..++++.+++++ + ...++|++
T Consensus 52 ~~G~~ylD~~s~~~~~~lG-h~~p~v~~A~~~~~~--~~-~~~~~~~~~~~~~~~~lae~l~~~~-~-----~~~~~v~~ 121 (472)
T 3hmu_A 52 SEGEEILDAMAGLWCVNIG-YGRDELAEVAARQMR--EL-PYYNTFFKTTHVPAIALAQKLAELA-P-----GDLNHVFF 121 (472)
T ss_dssp TTCCEEECTTHHHHTCTTC-BCCHHHHHHHHHHHH--HC-SCCCSSSSEECHHHHHHHHHHHHHS-C-----TTEEEEEE
T ss_pred CCCCEEEECCCchhhccCC-CCCHHHHHHHHHHHH--hc-cccccccccCCHHHHHHHHHHHHhC-C-----CCCCEEEE
Confidence 4578999999997666677 567788888888876 21 112322222 344555555544 2 12378999
Q ss_pred eecCCcccHHHHHHHHHHhh------cCCCeEEecCCCCCChHHHHhhcCc------------eeeEEEeec--CCCCCc
Q 015435 104 VQCLSGTGSLRVGAEFLARH------YHQLTIYIPQPTWGNHPKVFTLAGL------------SVKTYRYYD--PATRGL 163 (407)
Q Consensus 104 ~~t~g~t~a~~~~~~~~~~~------~~gd~Vi~~~p~y~~~~~~~~~~G~------------~~~~v~~~~--~~~~~~ 163 (407)
++||++|++.+++++... .+++.|++.+++|.++.......+. .++.++... ..+...
T Consensus 122 --~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~ 199 (472)
T 3hmu_A 122 --AGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDM 199 (472)
T ss_dssp --ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTC
T ss_pred --eCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCccc
Confidence 999999999998776543 2467899999999988766554433 233444310 000012
Q ss_pred C--------hhhHHHHHHcC-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhH
Q 015435 164 N--------FQGLLEDLRAA-PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQ 233 (407)
Q Consensus 164 d--------~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~ 233 (407)
+ +++|++.+.+. +.+.+++++.+++|++|.+ .+++.+++|+++|++||++||+||+|.+|+..+. .+
T Consensus 200 ~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~---~~ 276 (472)
T 3hmu_A 200 DPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN---WF 276 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SC
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCc---cc
Confidence 3 77888888632 2333444435567777775 4899999999999999999999999999987652 22
Q ss_pred HHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHh--hhhhcccCCCChhHHHHHHHHhcChhhH
Q 015435 234 SVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLK--LVIRPMYSSPPIHGASIVATILKDSTMY 311 (407)
Q Consensus 234 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (407)
....+ ....+++ +|||.++.+|+|+|++ +++ +++.+.+. .+....+++.+++++.++.++|+...
T Consensus 277 a~~~~-~v~pdi~---t~sK~l~gg~~plG~v--~~~-----~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~-- 343 (472)
T 3hmu_A 277 GTQTM-GIRPHIM---TIAKGLSSGYAPIGGS--IVC-----DEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILE-- 343 (472)
T ss_dssp HHHHH-TCCCSEE---EECGGGTTTSSCCEEE--EEE-----HHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHH--
T ss_pred hhHHh-CCCCcee---eechhhhcCCcceEEE--EEC-----HHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHH--
Confidence 33222 2223333 5889998656999999 565 44444442 11223355788889998888876321
Q ss_pred HhHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCCcccccCCceeEEec-CCC--------------HHHHHHhHhhccEE
Q 015435 312 KEWTLELKAMADRII-SMRQQLFDALSARGTPGDWSHIIKQIGMFTFT-GLN--------------SEQVAFMTKEYHIY 375 (407)
Q Consensus 312 ~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~l~~~gi~ 375 (407)
+ +...++++ ++.+++.+.|+++.....+..+.+.|.++.+. .-+ ...+.+.|.++||.
T Consensus 344 ----~--~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 417 (472)
T 3hmu_A 344 ----E--ENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLI 417 (472)
T ss_dssp ----H--TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBC
T ss_pred ----H--hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcE
Confidence 1 24456666 67777777776653100133444555554432 111 23344445558999
Q ss_pred EcCCC---eEEec-CCCCCChhHHHHHHHHHHHh
Q 015435 376 MTSDG---RISMA-GLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 376 ~~~gg---Ris~~-~~~~e~i~~~~~~l~~~l~~ 405 (407)
+.++| ||+.. ..+++++++++++|++++++
T Consensus 418 v~~~g~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 451 (472)
T 3hmu_A 418 MRHVGDRMIISPPLVITPAEIDEMFVRIRKSLDE 451 (472)
T ss_dssp CEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 99876 77633 24889999999999998865
No 142
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.95 E-value=1.1e-27 Score=231.82 Aligned_cols=343 Identities=9% Similarity=-0.000 Sum_probs=203.0
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
..++++||++.|.+..+.| ..++.+++++.+++. .. ..|.+..+..+.++++++++..... ...++|++ |+
T Consensus 41 ~~g~~ylD~~~~~~~~~lG-~~~p~v~~A~~~~~~--~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~ 111 (448)
T 3dod_A 41 INGKEYYDGFSSVWLNVHG-HRKKELDDAIKKQLG--KI--AHSTLLGMTNVPATQLAETLIDISP--KKLTRVFY--SD 111 (448)
T ss_dssp TTSCEEEETTHHHHTCSSC-BSCHHHHHHHHHHHT--TC--SCCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEE--ES
T ss_pred CCCCEEEECCcchhhccCC-CCCHHHHHHHHHHHH--hc--cCccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eC
Confidence 4568999999997766677 557788888888775 21 1232333444455555555532221 12378999 99
Q ss_pred CcccHHHHHHHHHHhh--cC----CCeEEecCCCCCChHHHHhhcCc-------------eeeEEEeecCCCCCc-----
Q 015435 108 SGTGSLRVGAEFLARH--YH----QLTIYIPQPTWGNHPKVFTLAGL-------------SVKTYRYYDPATRGL----- 163 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~--~~----gd~Vi~~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~----- 163 (407)
||++|++.+++++... .+ +|+|++++|+|+++.......+. .+..++. +..+..
T Consensus 112 sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 189 (448)
T 3dod_A 112 SGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPI--PYVYRSESGDP 189 (448)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECC--CCCTTSSSCCH
T ss_pred chHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCC--CccccCCccch
Confidence 9999999997666443 03 49999999999877654443322 2333433 221211
Q ss_pred ------ChhhHHHHHHcCCC-CcEEEEecCCC-CCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHH
Q 015435 164 ------NFQGLLEDLRAAPS-GAIVLLHACAH-NPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQS 234 (407)
Q Consensus 164 ------d~~~l~~~i~~~~~-~~~v~i~~~p~-NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~ 234 (407)
|+++|++.+.+.+. ++++++ .+.+ |++|. +++++++++|+++|++||++||+||+|.+|+..+. ...
T Consensus 190 ~~~~~~d~~~le~~l~~~~~~~a~vi~-ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~---~~a 265 (448)
T 3dod_A 190 DECRDQCLRELAQLLEEHHEEIAALSI-ESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK---MFA 265 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGEEEEEE-ESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSG
T ss_pred hhhhHHHHHHHHHHHHhCCCCEEEEEE-eCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc---hhh
Confidence 47889988863223 344444 4445 77775 47888899999999999999999999998876542 111
Q ss_pred HHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhh-------hhhcccCCCChhHHHHHHHHhc
Q 015435 235 VRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKL-------VIRPMYSSPPIHGASIVATILK 306 (407)
Q Consensus 235 ~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~ 306 (407)
...+ ....+ +.+|||.++ +| +|+||+ +++ +++.+.+.. .....+++.+++++.++.++++
T Consensus 266 ~~~~-~~~~d---i~t~sK~l~-~G~~~ig~v--~~~-----~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~ 333 (448)
T 3dod_A 266 CEHE-NVQPD---LMAAGKGIT-GGYLPIAVT--FAT-----EDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLA 333 (448)
T ss_dssp GGGG-TCCCS---EEEECGGGG-TTSSCCEEE--EEE-----HHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHH
T ss_pred hhhc-CCCCC---EEEeccccc-CCcCceEEE--EEC-----HHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHH
Confidence 1111 11122 336899998 59 599999 566 556665654 3333455778888988888876
Q ss_pred ChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC--C-------------HHHHHHhHhh
Q 015435 307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL--N-------------SEQVAFMTKE 371 (407)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~-------------~~~~~~~l~~ 371 (407)
... + +.+.++++++.+++.+.|+++.....+....+.|. +.|+.+ + ...+...+.+
T Consensus 334 ~~~------~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 404 (448)
T 3dod_A 334 LFE------S--ENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGF-MCGAELVRSKETKEPYPADRRIGYKVSLKMRE 404 (448)
T ss_dssp HHH------H--TTHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETT-EEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH
T ss_pred HHh------c--ccHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeE-EEEEEEccCcccccccchhhHHHHHHHHHHHH
Confidence 331 1 22334444455555555544211001223333344 444322 1 1334444445
Q ss_pred ccEEEcCCC---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 372 YHIYMTSDG---RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 372 ~gi~~~~gg---Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
+||.+.|+| ||+++. .+++++++++++|+++++++
T Consensus 405 ~Gv~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 443 (448)
T 3dod_A 405 LGMLTRPLGDVIAFLPPLASTAEELSEMVAIMKQAIHEV 443 (448)
T ss_dssp TTEECCEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEeccCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 799999976 775432 48899999999999998753
No 143
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.95 E-value=4.5e-27 Score=224.23 Aligned_cols=317 Identities=16% Similarity=0.104 Sum_probs=218.4
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT 110 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t 110 (407)
.++|||+.|.+ +.++.+.+++.+.+. . ..|.+..+..++++++++++ +. +++++ ++||+
T Consensus 30 ~~~id~~~~~~------~~~~~v~~a~~~~~~--~---~~y~~~~~~~~l~~~la~~~-~~-------~~~v~--~~~Gt 88 (399)
T 2oga_A 30 VPFLDLKAAYE------ELRAETDAAIARVLD--S---GRYLLGPELEGFEAEFAAYC-ET-------DHAVG--VNSGM 88 (399)
T ss_dssp BCSCCHHHHHH------HTHHHHHHHHHHHHH--H---TCCSSSHHHHHHHHHHHHHT-TS-------SEEEE--ESCHH
T ss_pred CcccccCcCCC------CCCHHHHHHHHHHHh--c---CCCCCchhHHHHHHHHHHHH-CC-------CeEEE--ecCHH
Confidence 57899998875 334555555555554 1 25766678999999999988 43 36777 88889
Q ss_pred cHHHHHHHHHHh-hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435 111 GSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN 189 (407)
Q Consensus 111 ~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N 189 (407)
+++.+++ ... +.+||+|+++.|+|..+...++..|.+++.++++ ++++.+|++++++.+. +++++++ ++|
T Consensus 89 ~a~~~~l--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~--~~~~~v~----~~n 159 (399)
T 2oga_A 89 DALQLAL--RGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPH-EDHPTLDPLLVEKAIT--PRTRALL----PVH 159 (399)
T ss_dssp HHHHHHH--HHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-SSSSSBCHHHHHHHCC--TTEEEEC----CBC
T ss_pred HHHHHHH--HHhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecC-CCCCCcCHHHHHHhcC--CCCeEEE----EeC
Confidence 9999984 333 5789999999999999999999999999999984 4457899999999986 4444433 478
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCceeeecccccccc-CCCCCchhHHHHHHHHcCCcEEEEEec--CccccccCCCcceeE
Q 015435 190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFA-SGSLDADAQSVRMFVADGGECLVAQSY--AKNMGLYGERVGALS 266 (407)
Q Consensus 190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~--sK~~~~~G~r~G~~~ 266 (407)
|||.+.+ +++|+++|+++|+++|+|++|..+. +++ .. +.. -..+++.|+ ||.++.+| |+|++
T Consensus 160 ~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~---~~-----~~~--~~di~~~S~~~sK~~~~~G-~~g~~- 224 (399)
T 2oga_A 160 LYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRG---RR-----IGA--GSSVAAFSFYPGKNLGCFG-DGGAV- 224 (399)
T ss_dssp GGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETT---EE-----TTC--TTCEEEEECCTTSSSCCSS-CCEEE-
T ss_pred CcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCC---ee-----ccc--ccCEEEEeCCCCccCCcCC-ceEEE-
Confidence 9999765 7888888999999999999997653 221 11 111 124788888 79999779 99998
Q ss_pred EeecChhhHHHHHHHHhhhhh--------cccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015435 267 IVCKTEDVASRVESQLKLVIR--------PMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA 338 (407)
Q Consensus 267 ~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 338 (407)
+++++++.+++......... ......+.+.+.++...++.. +...++.+++++++.+.|++
T Consensus 225 -~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~----------~~~~~~~~~~~~~l~~~L~~ 293 (399)
T 2oga_A 225 -VTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHL----------DSWNGRRSALAAEYLSGLAG 293 (399)
T ss_dssp -EESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTH----------HHHHHHHHHHHHHHHHHTTT
T ss_pred -EeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhcc
Confidence 67777766655442211100 011234555555555554432 23445556677888888877
Q ss_pred cCCCCCcccc-cCCceeEEec-----CCCHHHHHHhHhhccEEEcCC-----------------------------C--e
Q 015435 339 RGTPGDWSHI-IKQIGMFTFT-----GLNSEQVAFMTKEYHIYMTSD-----------------------------G--R 381 (407)
Q Consensus 339 ~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~l~~~gi~~~~g-----------------------------g--R 381 (407)
++. +.+. .+..+.+.|. ..+.+.+.+.|.++||.+.++ + |
T Consensus 294 ~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lR 370 (399)
T 2oga_A 294 LPG---IGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLS 370 (399)
T ss_dssp CTT---CBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEE
T ss_pred CCC---ccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEE
Confidence 631 3432 2334444432 235666666666789988652 2 6
Q ss_pred EEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 382 ISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 382 is~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
|++.. .+++|+++++++|+++++++
T Consensus 371 i~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 371 LPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 66653 47899999999999998764
No 144
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.95 E-value=1.4e-27 Score=223.91 Aligned_cols=326 Identities=17% Similarity=0.088 Sum_probs=215.3
Q ss_pred CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435 30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG 109 (407)
Q Consensus 30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~ 109 (407)
++.+|||+.+.+ + +.++.+.+++.+.+. .....|.+.....++++.+++++ +. +.++++ |+||
T Consensus 6 ~~~~id~~~~~~----~-~~~~~v~~a~~~~~~---~~~~~~~~~~~~~~l~~~la~~~-g~------~~~v~~--~~~g 68 (356)
T 1v72_A 6 RPPALGFSSDNI----A-GASPEVAQALVKHSS---GQAGPYGTDELTAQVKRKFCEIF-ER------DVEVFL--VPTG 68 (356)
T ss_dssp CCCCCBCSCGGG----C-CCCHHHHHHHHHTTS---SCCCSTTCSHHHHHHHHHHHHHH-TS------CCEEEE--ESCH
T ss_pred CCceEeeccCCc----c-CCCHHHHHHHHhhcc---CcccccccchHHHHHHHHHHHHh-CC------CCcEEE--eCCc
Confidence 467899998753 3 334455555544432 12345655556778888888877 41 256899 9999
Q ss_pred ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH--Hhhc--CceeeEEEeecCCCCCcChhhHHH-HHHcC-----CCCc
Q 015435 110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV--FTLA--GLSVKTYRYYDPATRGLNFQGLLE-DLRAA-----PSGA 179 (407)
Q Consensus 110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~--~~~~--G~~~~~v~~~~~~~~~~d~~~l~~-~i~~~-----~~~~ 179 (407)
++++.+++ .....+||.|+++.|+|...... +... |.+++.+|.. ++.+|++++++ ++.+. ++++
T Consensus 69 t~a~~~al--~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~ 143 (356)
T 1v72_A 69 TAANALCL--SAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPA 143 (356)
T ss_dssp HHHHHHHH--HTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEE
T ss_pred cHHHHHHH--HHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCce
Confidence 99999984 33467999999999998766555 6666 9999999873 36799999999 88631 1345
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccC--CCCCchhHHHHHHHHcCCcEEEEEecCccccc
Q 015435 180 IVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS--GSLDADAQSVRMFVADGGECLVAQSYAKNMGL 257 (407)
Q Consensus 180 ~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 257 (407)
++++ ++|+| ||.+++.+++++|+++|++||+++|+|++|..+.. .+....... ...... +++.|+||. +
T Consensus 144 ~v~~-~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~~~d-~~~~s~sK~-g- 214 (356)
T 1v72_A 144 CVSI-TQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMT----WKAGVD-ALSFGATKN-G- 214 (356)
T ss_dssp EEEE-ESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTT----GGGTCC-EEEECCGGG-T-
T ss_pred EEEE-EcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhh----hhhcCC-EEEEecccC-C-
Confidence 6666 66887 99999999999999999999999999999865421 111101000 011222 445699997 3
Q ss_pred cCCCcc--eeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015435 258 YGERVG--ALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDA 335 (407)
Q Consensus 258 ~G~r~G--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (407)
.|+| |+ ..++++.+++..... ... ........++..+...+++.. ..+..++++++++++.+.
T Consensus 215 --~~~G~g~~---~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~l~~~ 279 (356)
T 1v72_A 215 --VLAAEAIV---LFNTSLATEMSYRRK-RAG-HLSSKMRFLSAQIDAYLTDDL--------WLRNARKANAAAQRLAQG 279 (356)
T ss_dssp --CSSCEEEE---ESSGGGHHHHHHHHH-HTT-CCCSSTHHHHHHHHHHTSTTH--------HHHHHHHHHHHHHHHHHH
T ss_pred --CcCccEEE---EECHHHHhhHHHHhh-ccC-chhhhHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHH
Confidence 3677 55 446776665543211 111 111122233333444554321 223456677888999999
Q ss_pred HHhcCCCCCcccccCCceeEEecCCCHHHHHHhHhhccEEEcCC----C--eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435 336 LSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSD----G--RISMAG-LSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 336 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g----g--Ris~~~-~~~e~i~~~~~~l~~~l~~ 405 (407)
|+++.. +.+..+.++++.|+.+..+....+ .++||.+.+| + ||++.. .+++++++++++|++++++
T Consensus 280 L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 280 LEGLGG---VEVLGGTEANILFCRLDSAMIDAL-LKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp HTTCTT---EEEESCCCSSEEEEEECHHHHHHH-HHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred HhhCCC---cEEccCCCccEEEEEcCHHHHHHH-HhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 987521 666566677788887766555555 5579999864 2 888653 4779999999999988765
No 145
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.95 E-value=7.4e-27 Score=224.53 Aligned_cols=317 Identities=17% Similarity=0.139 Sum_probs=216.8
Q ss_pred eeeeeeeecCCCccccchhHHHHHHHHhccccccccCCC-CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHH
Q 015435 35 NLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLP-IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSL 113 (407)
Q Consensus 35 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~ 113 (407)
+|+.|.+ +. +.|+.+.+++.+.+. . ..|.+ ..+..++++++++++ +. +++++ |+|+++++
T Consensus 20 ~l~~~~p---~~-~~p~~~~~a~~~~~~--~---~~y~~~~~~~~~l~~~la~~~-~~-------~~v~~--~~ggt~al 80 (424)
T 2po3_A 20 PLLVGRP---NR-IDRARLYERLDRALD--S---QWLSNGGPLVREFEERVAGLA-GV-------RHAVA--TCNATAGL 80 (424)
T ss_dssp CEETTCC---CC-CCHHHHHHHHHHHHH--H---TCCSSSCHHHHHHHHHHHHHH-TS-------SEEEE--ESCHHHHH
T ss_pred cccccCC---CC-CChHHHHHHHHHHHh--c---CCcccCCHHHHHHHHHHHHHh-CC-------CeEEE--eCCHHHHH
Confidence 6888875 33 345566666666554 2 24766 678999999999999 53 58999 99999999
Q ss_pred HHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCC
Q 015435 114 RVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGV 193 (407)
Q Consensus 114 ~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~ 193 (407)
.+++..+ .+||+|++++|+|..+...+...|.+++.++++ +.++.+|++++++.+. ++++++++ + ||||.
T Consensus 81 ~~~l~~l---~~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~--~~~~~v~~-~---~~tG~ 150 (424)
T 2po3_A 81 QLLAHAA---GLTGEVIMPSMTFAATPHALRWIGLTPVFADID-PDTGNLDPDQVAAAVT--PRTSAVVG-V---HLWGR 150 (424)
T ss_dssp HHHHHHH---TCCSEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTSSBCHHHHGGGCC--TTEEEEEE-E---CGGGC
T ss_pred HHHHHHc---CCCCEEEECCCccHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHhhC--cCCcEEEE-E---CCCCC
Confidence 9995433 478999999999999999999999999999984 4467789999999886 45666666 2 48998
Q ss_pred CCCHHHHHHHHHHHHHcCceeeeccccc-cccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecCh
Q 015435 194 DPTLEQWEQIRQLMRSKGLLPFFDSAYQ-GFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTE 272 (407)
Q Consensus 194 ~~~~~~l~~i~~~~~~~~~~li~D~~y~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~ 272 (407)
. .++++|+++|+++|+++|+|++|. ++.+++. + +....+ +++.||||..+++|.|+||+ +++++
T Consensus 151 ~---~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~-----~---~~~~~d--i~~~S~sk~K~l~~~~~G~~--v~~~~ 215 (424)
T 2po3_A 151 P---CAADQLRKVADEHGLRLYFDAAHALGCAVDGR-----P---AGSLGD--AEVFSFHATKAVNAFEGGAV--VTDDA 215 (424)
T ss_dssp C---CCHHHHHHHHHHTTCEEEEECTTCTTCEETTE-----E---TTSSSS--EEEEECCTTSSSCCSSCEEE--EESCH
T ss_pred c---CCHHHHHHHHHHcCCEEEEECccccCCeECCe-----e---cccccC--EEEEeCCCCCCccCCCCeEE--EeCCH
Confidence 5 468889999999999999999998 5665421 1 111122 88999996666777899999 67767
Q ss_pred hhHHHHHHHHhhhhhc-ccC----CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 015435 273 DVASRVESQLKLVIRP-MYS----SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH 347 (407)
Q Consensus 273 ~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 347 (407)
++.+.+.......... ... ....+.+.++...+... +.+++.+++.+++++++.+.|++++. +.+
T Consensus 216 ~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~g---~~~ 285 (424)
T 2po3_A 216 DLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSL-------DAFPEVIDRNRRNHAAYREHLADLPG---VLV 285 (424)
T ss_dssp HHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTCSCTT---EEE
T ss_pred HHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhccCCC---ccc
Confidence 7666655432211100 000 00011222222222211 23556667777888888888877631 555
Q ss_pred cc-CCce---eEEe-c-------CCCHHHHHHhHhhccEEEcCC--------------------C--e-----EEec---
Q 015435 348 II-KQIG---MFTF-T-------GLNSEQVAFMTKEYHIYMTSD--------------------G--R-----ISMA--- 385 (407)
Q Consensus 348 ~~-~~~~---~~~~-~-------~~~~~~~~~~l~~~gi~~~~g--------------------g--R-----is~~--- 385 (407)
.. +.++ ++.| + +.+.+.+.+.|.++||.+.+. + | |+++
T Consensus 286 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~ 365 (424)
T 2po3_A 286 ADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGT 365 (424)
T ss_dssp CCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCST
T ss_pred cCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCC
Confidence 44 3332 2222 2 345666777777799998752 0 3 6664
Q ss_pred CCCCCChhHHHHHHHHHHHh
Q 015435 386 GLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 386 ~~~~e~i~~~~~~l~~~l~~ 405 (407)
..+++++++++++|++++++
T Consensus 366 ~~t~e~i~~~~~~L~~~~~~ 385 (424)
T 2po3_A 366 AIGDDDIRRVADLLRLCATR 385 (424)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 25789999999999998764
No 146
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.95 E-value=8.1e-27 Score=227.12 Aligned_cols=339 Identities=12% Similarity=0.099 Sum_probs=214.1
Q ss_pred CCCeeeeeeee-eecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 30 SPVKLNLGVGA-YRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 30 ~~~~i~l~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
+.++++++.|. +.|-.....++.+.++..+.+. .. ...|.+..+..++++++++++ +. +++++ |+|
T Consensus 33 g~~~~~~~~g~~ylD~~~~~~~~~v~~a~~~~~~--~~-~~~y~~~~~~~~l~~~la~~~-~~-------~~v~~--t~g 99 (467)
T 1ax4_A 33 GYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMI--TG-DEAYAGSRNYYDLKDKAKELF-NY-------DYIIP--AHQ 99 (467)
T ss_dssp TSCGGGSCGGGCSEECSCSSSCCCEEHHHHHHHH--TC-CCCSSSCHHHHHHHHHHHHHH-CC-------CEEEE--ESS
T ss_pred CcCcccCCCCceeeecccCcCCHHHHHHHHHHHh--hc-ccccccCccHHHHHHHHHHHc-CC-------CcEEE--cCC
Confidence 44556666553 1121111112455555555554 22 335877788999999999998 53 68999 999
Q ss_pred cccHHHHHHHHHHhhc----CCCe---EEecCCCCCChHHHHhhcCceeeEEEeec--------CCCCCcChhhHHHHHH
Q 015435 109 GTGSLRVGAEFLARHY----HQLT---IYIPQPTWGNHPKVFTLAGLSVKTYRYYD--------PATRGLNFQGLLEDLR 173 (407)
Q Consensus 109 ~t~a~~~~~~~~~~~~----~gd~---Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~--------~~~~~~d~~~l~~~i~ 173 (407)
||+|+.++++.+ .. +||. |+++.+.|..+...+...|.+++.++... +.++.+|+++|++++.
T Consensus 100 gt~A~~~al~~~--~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~ 177 (467)
T 1ax4_A 100 GRGAENILFPVL--LKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIA 177 (467)
T ss_dssp HHHHHHHHHHHH--HHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHH
T ss_pred cHHHHHHHHHHH--HHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHH
Confidence 999999996444 55 8998 99997777777888888999988776521 1134689999999997
Q ss_pred cC--CCCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHHcCceeeecccccc--c--------cCCCCCchhHHHH-HHH
Q 015435 174 AA--PSGAIVLLHACAHNPT-GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQG--F--------ASGSLDADAQSVR-MFV 239 (407)
Q Consensus 174 ~~--~~~~~v~i~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~--~--------~~~~~~~~~~~~~-~~~ 239 (407)
+. ++++++++ ++|+||| |.+++.+++++|+++|++||++||+|+++.. . .+.+. +...+. ...
T Consensus 178 ~~~~~~~~~vi~-~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 254 (467)
T 1ax4_A 178 QHGADNIVAIVS-TVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNA--TIKEVIFDMY 254 (467)
T ss_dssp HHCGGGEEEEEE-ESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC--CHHHHHHHHG
T ss_pred hcCCCCeeEEEE-eccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCC--chhhhhhhhc
Confidence 42 14566666 8999999 8999999999999999999999999998542 0 22221 111111 000
Q ss_pred HcCCcEEEEEecCccccccCCCc-ceeEEeecCh-hhHHHHHHHHhhhhhcccC-CCChhHHHHHHHHhcChhhHHhHHH
Q 015435 240 ADGGECLVAQSYAKNMGLYGERV-GALSIVCKTE-DVASRVESQLKLVIRPMYS-SPPIHGASIVATILKDSTMYKEWTL 316 (407)
Q Consensus 240 ~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (407)
...+ +++.|+||.++++ + |++ +++|+ ++.+.+............. ..+...+.++...++... +
T Consensus 255 ~~~d--~~~~s~sK~~g~~---~Gg~~--~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~ 321 (467)
T 1ax4_A 255 KYAD--ALTMSAKKDPLLN---IGGLV--AIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGT------E 321 (467)
T ss_dssp GGCS--EEEEETTSTTCCS---SCEEE--EESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTT------C
T ss_pred cccc--eEEEeccccCCCC---cceEE--EeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhh------h
Confidence 1122 4568999998754 4 455 45656 7666654422211111111 222222222222232110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecC-------CC-----HHHH-HHhHhhccEEEcC-----
Q 015435 317 ELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTG-------LN-----SEQV-AFMTKEYHIYMTS----- 378 (407)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~-----~~~~-~~~l~~~gi~~~~----- 378 (407)
++..++..++++++.+.|++.+ +.+..+.++++.|++ +. .+.+ ..+++++||.+.+
T Consensus 322 --~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~ 395 (467)
T 1ax4_A 322 --EEYLHYRIGQVKYLGDRLREAG----IPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFL 395 (467)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTT----CCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHH
T ss_pred --hhHHHHHHHHHHHHHHHHHhCC----CCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccc
Confidence 0112223356778888887755 566667778888765 32 2334 4454788999876
Q ss_pred -------C-------C--eEEecC--CCCCChhHHHHHHHHHHHh
Q 015435 379 -------D-------G--RISMAG--LSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 379 -------g-------g--Ris~~~--~~~e~i~~~~~~l~~~l~~ 405 (407)
| + ||++.. .+++++++++++|++++++
T Consensus 396 ~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 440 (467)
T 1ax4_A 396 LGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEK 440 (467)
T ss_dssp HCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred cccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 2 3 888872 4789999999999988765
No 147
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.95 E-value=8.3e-27 Score=221.09 Aligned_cols=296 Identities=15% Similarity=0.122 Sum_probs=200.2
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh---cCCCeEEec-CCCCCCh-HHHHhhcCcee
Q 015435 76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH---YHQLTIYIP-QPTWGNH-PKVFTLAGLSV 150 (407)
Q Consensus 76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~---~~gd~Vi~~-~p~y~~~-~~~~~~~G~~~ 150 (407)
...++++.+++++ +.. ..++++++++ |+|+|+++.+++.. .. .+||+|+++ .|.|..+ ...++..|.++
T Consensus 39 ~~~~~~~~l~~~~-~~~-~~~~~~~v~~--~~g~t~al~~~~~~--~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~ 112 (385)
T 2bkw_A 39 IFQRVLKNTRAVF-KSA-AASKSQPFVL--AGSGTLGWDIFASN--FILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQV 112 (385)
T ss_dssp HHHHHHHHHHHHT-TCC-GGGTCEEEEE--ESCTTHHHHHHHHH--HSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHh-CCC-CCCCCceEEE--cCchHHHHHHHHHH--HhccCCCCCeEEEEcCCcchHHHHHHHHHcCCce
Confidence 4667888999988 332 2234579999 99999999999533 34 789999888 4566555 36777889999
Q ss_pred eEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc--CceeeeccccccccCCCC
Q 015435 151 KTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK--GLLPFFDSAYQGFASGSL 228 (407)
Q Consensus 151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~--~~~li~D~~y~~~~~~~~ 228 (407)
+.++.. +.++.+|++++++++++ .+++++++ ++|+||||.+.+ +++|+++|++| |+++|+|++|..... ..
T Consensus 113 ~~v~~~-~~~~~~d~~~l~~~l~~-~~~~~v~~-~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~~-~~ 185 (385)
T 2bkw_A 113 DVVRPL-KIGESVPLELITEKLSQ-NSYGAVTV-THVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIGCE-EF 185 (385)
T ss_dssp EEECCS-STTSCCCHHHHHHHHHH-SCCSEEEE-ESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTTTS-CC
T ss_pred EEEecC-CCCCCCCHHHHHHHHhc-CCCCEEEE-EccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccccCCc-cc
Confidence 999873 23467899999999973 25677776 899999999887 67888889999 999999999863221 11
Q ss_pred CchhHHHHHHHHcCCcEEEEEecCcccc-ccCCCcceeEEeecChhhHH-HHH------------------HHHhhhhh-
Q 015435 229 DADAQSVRMFVADGGECLVAQSYAKNMG-LYGERVGALSIVCKTEDVAS-RVE------------------SQLKLVIR- 287 (407)
Q Consensus 229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~v~~~~~~~~-~~~------------------~~~~~~~~- 287 (407)
+ + ...+..+++.|+||.++ ++| +|++ +++ ++..+ .+. ........
T Consensus 186 --~---~----~~~~~d~~~~s~~K~~~~~~G--~G~~--~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (385)
T 2bkw_A 186 --E---F----DEWGVDFALTASQKAIGAPAG--LSIS--LCS-SRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAG 251 (385)
T ss_dssp --C---T----TTTTCSEEEEESSSTTCCCSC--EEEE--EEC-HHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTT
T ss_pred --c---c----cccCceEEEecCccccccCCc--ceEE--EEc-HHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhcc
Confidence 1 1 11234678899999664 556 4888 565 33332 221 00111111
Q ss_pred --cccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCcccccC-----CceeEEecC
Q 015435 288 --PMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDAL-SARGTPGDWSHIIK-----QIGMFTFTG 359 (407)
Q Consensus 288 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~-----~~~~~~~~~ 359 (407)
....+++..++.++..+++... ...+++.+++++++++++.+.| ++.+ +.+..+ ..+.+.|+.
T Consensus 252 ~~~~~~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g----~~~~~~~~~~~~~~~~~~~~ 322 (385)
T 2bkw_A 252 KGAYFATPPVQLINSLDVALKEIL-----EEGLHKRWDLHREMSDWFKDSLVNGLQ----LTSVSRYPSNMSAHGLTAVY 322 (385)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHTTTC----CEESSCSSSTTBCSSCEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHHHHHHHHHHHhcC----ceecccCcccccCCceEEEe
Confidence 0112456666666655554321 0125677888899999999999 8775 554432 234555554
Q ss_pred CC-HHHHHHhHhhccEEEcCCC---------eEE-ec----CCCCCChhHHHHHHHHHHHhhC
Q 015435 360 LN-SEQVAFMTKEYHIYMTSDG---------RIS-MA----GLSSKTVPHLTDAIHAAVTRMG 407 (407)
Q Consensus 360 ~~-~~~~~~~l~~~gi~~~~gg---------Ris-~~----~~~~e~i~~~~~~l~~~l~~~~ 407 (407)
+. .+.+.+.|.++||.+.+|. ||+ ++ ..+++++++++++|+++++++|
T Consensus 323 ~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~~~ 385 (385)
T 2bkw_A 323 VADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRKK 385 (385)
T ss_dssp CSCHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC--
T ss_pred cCCHHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHhcC
Confidence 42 4445555566899998851 998 66 2488999999999999988765
No 148
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.95 E-value=6.2e-27 Score=226.77 Aligned_cols=341 Identities=12% Similarity=0.089 Sum_probs=212.8
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc---cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK---EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ 105 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~ 105 (407)
.+..++|++.|.+..+.| +.++.+++++.+++. ..... .| +.....++++.+++++ + .+.++|++
T Consensus 48 ~g~~~lD~~~~~~~~~lG-~~~~~v~~a~~~~~~--~~~~~~~~~~-~~~~~~~l~~~la~~~-~-----~~~~~v~~-- 115 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAG-HTRKEIQEAVAKQLS--TLDYSPGFQY-GHPLSFQLAEKITDLT-P-----GNLNHVFF-- 115 (449)
T ss_dssp TCCEEEETTHHHHTCTTC-BSCHHHHHHHHHHTT--TCSCCCSSSC-CCHHHHHHHHHHHTTS-S-----TTEEEEEE--
T ss_pred CCCEEEECCccHhhccCC-CCCHHHHHHHHHHHH--hCCCcccccc-CCHHHHHHHHHHHHhC-C-----CCCCEEEE--
Confidence 457899999887644456 446677777777765 21111 22 1122334444444443 2 23478999
Q ss_pred cCCcccHHHHHHHHHHhhc------CCCeEEecCCCCCChHH-HHhhcCc------------eeeEEEeecCCC---CCc
Q 015435 106 CLSGTGSLRVGAEFLARHY------HQLTIYIPQPTWGNHPK-VFTLAGL------------SVKTYRYYDPAT---RGL 163 (407)
Q Consensus 106 t~g~t~a~~~~~~~~~~~~------~gd~Vi~~~p~y~~~~~-~~~~~G~------------~~~~v~~~~~~~---~~~ 163 (407)
|+||+++++++++.+.... ++|+|++.+|+|+++.. .+...|. .++.++...... .++
T Consensus 116 ~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 195 (449)
T 3a8u_X 116 TDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRG 195 (449)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSS
T ss_pred cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccC
Confidence 9999999999976553322 67899999999987754 4444331 234444311101 124
Q ss_pred C--------hhhHHHHHHcCC-CCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhH
Q 015435 164 N--------FQGLLEDLRAAP-SGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQ 233 (407)
Q Consensus 164 d--------~~~l~~~i~~~~-~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~ 233 (407)
| ++++++.+.+.. .+..++++...+||||+ +.+++.+++|+++|++||++||+||+|.+|+..+. ..
T Consensus 196 d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~---~~ 272 (449)
T 3a8u_X 196 MPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGS---MF 272 (449)
T ss_dssp SCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SS
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCc---ch
Confidence 6 899999887321 23333442333577997 56799999999999999999999999988876432 12
Q ss_pred HHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhh---------hhcccCCCChhHHHHHHH
Q 015435 234 SVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLV---------IRPMYSSPPIHGASIVAT 303 (407)
Q Consensus 234 ~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 303 (407)
....+ ....+++ |+||.++ +| +|+||+ +++ ++ +.+.+... ....+.+++.+++.++.+
T Consensus 273 ~~~~~-~~~~di~---s~sK~l~-~G~~~~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~a 340 (449)
T 3a8u_X 273 GADSF-GVTPDLM---CIAKQVT-NGAIPMGAV--IAS-TE----IYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLA 340 (449)
T ss_dssp HHHHH-TCCCSEE---EECGGGG-TTSSCCEEE--EEE-HH----HHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHH
T ss_pred hhhhc-CCCCCEE---EEccccc-CCCCceEEE--EEC-HH----HHHHhhccCcccccccccccCCCcccHHHHHHHHH
Confidence 22222 2122322 8899998 57 999998 565 34 44444332 112344677888888877
Q ss_pred HhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCcccccCCceeEEecCCC-----H----HHHHHhHhhcc
Q 015435 304 ILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGT-PGDWSHIIKQIGMFTFTGLN-----S----EQVAFMTKEYH 373 (407)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~l~~~g 373 (407)
+++... + +...++++++++++.+.|++++. +. +....+ .|.+.|+.+. . ..+...|.++|
T Consensus 341 al~~~~------~--~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~G 410 (449)
T 3a8u_X 341 ALCLLQ------K--ENLVQSVAEVAPHFEKALHGIKGAKN-VIDIRN-FGLAGAIQIAPRDGDAIVRPFEAGMALWKAG 410 (449)
T ss_dssp HHHHHH------H--TTHHHHHHHHHHHHHHHHHTTTTSTT-EEEEEE-ETTEEEEEECCBTTBSSHHHHHHHHHHHHHT
T ss_pred HHHHHH------h--cCHHHHHHHHHHHHHHHHHHHhcCCC-eEEEee-eEEEEEEEEecCcccccccHHHHHHHHHHCC
Confidence 775321 1 24567778888888888887541 11 122233 3455555331 1 12444444579
Q ss_pred EEEcCCC---eEEec-CCCCCChhHHHHHHHHHHHhh
Q 015435 374 IYMTSDG---RISMA-GLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 374 i~~~~gg---Ris~~-~~~~e~i~~~~~~l~~~l~~~ 406 (407)
|.+.++| ||++. ..+++++++++++|+++++++
T Consensus 411 v~v~~~g~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 411 FYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp EECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred cEEecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 9999875 88854 358899999999999998764
No 149
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.95 E-value=4.5e-27 Score=227.99 Aligned_cols=328 Identities=14% Similarity=0.054 Sum_probs=200.1
Q ss_pred CCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 29 TSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 29 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
.+..+|||+.|.+..+.| +.++.+++++.+++. ... .| .+..++++++++++....+ ..++|++ |+|
T Consensus 55 ~g~~~iD~~~~~~~~~lg-~~~~~v~~a~~~~~~--~~~--~~---~~~~~~~~~la~~l~~~~~---~~~~v~~--~~g 121 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLG-HGHPRVNAAIAEALS--HGV--QY---AASHPLEVRWAERIVAAFP---SIRKLRF--TGS 121 (453)
T ss_dssp TCCEEEESCTTTTSCTTC-BTCHHHHHHHHHHHT--TTC--SS---CSSCHHHHHHHHHHHHHCT---TCSEEEE--ESC
T ss_pred CCCEEEECcccHhhcccC-CCCHHHHHHHHHHHH--hCC--CC---CCCCHHHHHHHHHHHhhCC---CCCEEEE--eCC
Confidence 467899999997544456 456677777777775 221 22 1345788888888844322 3489999 999
Q ss_pred cccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhh-----------cCce------eeEEEeecCCCCCcChhhHHHH
Q 015435 109 GTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTL-----------AGLS------VKTYRYYDPATRGLNFQGLLED 171 (407)
Q Consensus 109 ~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~-----------~G~~------~~~v~~~~~~~~~~d~~~l~~~ 171 (407)
|++|+++++++...+..++.|++.+|+|+++...... .|.. +..++ . .|++++++.
T Consensus 122 g~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~---~d~~~le~~ 194 (453)
T 2cy8_A 122 GTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIR----P---DDIEGMREV 194 (453)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEECC----------------------------CGGGEEEEC----T---TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecC----C---CCHHHHHHH
Confidence 9999999976543345668899999999876553321 1321 22221 1 388999998
Q ss_pred HHcC-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEE
Q 015435 172 LRAA-PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQ 249 (407)
Q Consensus 172 i~~~-~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 249 (407)
+.+. ++++++++ .+.+||||.+ .+++++++|+++|++||++||+||+|.++ ..+ .......+ ....+ +.
T Consensus 195 l~~~~~~~~~vi~-ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g---~~~~~~~~-~~~~d---i~ 265 (453)
T 2cy8_A 195 FANHGSDIAAFIA-EPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVG---NHGMQALL-DVQPD---LT 265 (453)
T ss_dssp HHHHGGGEEEEEE-CSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTC---TTHHHHHH-TCCCS---EE
T ss_pred HHhcCCCEEEEEE-CCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccC---chhhhHHh-CCCCc---EE
Confidence 8742 23344443 3345779976 57999999999999999999999999988 433 12222222 11222 23
Q ss_pred ecCccccccCCCcceeEEeecChhhHHHHHHHHhh-----hhhcccCCCChhHHHHHHHHhcC-hhhHHhHHHHHHHHHH
Q 015435 250 SYAKNMGLYGERVGALSIVCKTEDVASRVESQLKL-----VIRPMYSSPPIHGASIVATILKD-STMYKEWTLELKAMAD 323 (407)
Q Consensus 250 s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 323 (407)
|+||.++ +|+|+||+ +++ +++.+.+.. .....+++++++++.++.++++. . . +...+
T Consensus 266 s~sK~l~-~G~~~G~v--~~~-----~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~--~-------~~~~~ 328 (453)
T 2cy8_A 266 CLAKASA-GGLPGGIL--GGR-----EDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL--E-------DDVCA 328 (453)
T ss_dssp EEEGGGG-TTSSCEEE--EEC-----HHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH--H-------TTHHH
T ss_pred EEChhhh-CCcceEEE--ech-----HHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh--h-------hhHHH
Confidence 8999999 59999999 566 344444433 11223446778888887777653 2 1 22345
Q ss_pred HHHHHHHHHHHHHHhc----CCCCCcccccCCceeEEecCCC-----------------------HHHHHHhHhhccEEE
Q 015435 324 RIISMRQQLFDALSAR----GTPGDWSHIIKQIGMFTFTGLN-----------------------SEQVAFMTKEYHIYM 376 (407)
Q Consensus 324 ~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~gi~~ 376 (407)
+++++++++.+.|+++ +. .....+.|. +.|+.+. ...+...|.++||.+
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v 404 (453)
T 2cy8_A 329 KINDLGQFAREAMNHLFARKGL---NWLAYGRFS-GFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDI 404 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC---CEEEECCTT-EEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHHHHHHHHHHhhCCC---cEEEEEeee-EEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEE
Confidence 5566666666666554 31 122344444 4454321 223444444589999
Q ss_pred cCCCeEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 377 TSDGRISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 377 ~~ggRis~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
.|++|+.+.. .+++++++++++|+++++++
T Consensus 405 ~~~~~~~l~~~~t~~~i~~~l~~l~~~l~~~ 435 (453)
T 2cy8_A 405 GGRGSVFLSAQHEREHVEHLVTTFDRVLDRL 435 (453)
T ss_dssp BTTTEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 8877544332 48899999999999988753
No 150
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.95 E-value=7e-26 Score=215.88 Aligned_cols=250 Identities=14% Similarity=0.093 Sum_probs=170.6
Q ss_pred eeeeeeeeecCCCc--cccchhHHHHHHHHhccccccccCC--CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435 34 LNLGVGAYRTEEGK--PLVLNVVRKAEQLLVNDQSRVKEYL--PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG 109 (407)
Q Consensus 34 i~l~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~--~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~ 109 (407)
-.+++|.| +.. +...+.+.+.+.... +....+.|. +.....++++.+++++ +. ++.++ ++||
T Consensus 23 ~~~~~~~~---d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~-g~-------~~~i~--~~sG 88 (398)
T 2rfv_A 23 STGALSTP---IFQTSTFVFDSAEQGAARFA-LEESGYIYTRLGNPTTDALEKKLAVLE-RG-------EAGLA--TASG 88 (398)
T ss_dssp TTCCSSCC---CCCCSBCCCSSHHHHHHHC------CCSBTTTCCHHHHHHHHHHHHHH-TC-------SEEEE--ESSH
T ss_pred CCCCcCCC---CcCCCccccCCHHHHHHhhc-CCCCCCceeCCCChHHHHHHHHHHHHh-CC-------CcEEE--ECCH
Confidence 45777765 331 223333333333221 112233343 4556788999999988 43 35666 7777
Q ss_pred ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEec
Q 015435 110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185 (407)
Q Consensus 110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~ 185 (407)
++++.+++ ...+.+||+|+++.|+|.++...+ +..|.+++.++. .|++++++.+. ++++++++ +
T Consensus 89 ~~a~~~~l--~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~i~--~~~~~v~~-~ 156 (398)
T 2rfv_A 89 ISAITTTL--LTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA-------AKPEEIRAAMR--PETKVVYI-E 156 (398)
T ss_dssp HHHHHHHH--HHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT-------TSHHHHHHHCC--TTEEEEEE-E
T ss_pred HHHHHHHH--HHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCC-------CCHHHHHHhcC--CCCeEEEE-E
Confidence 89999985 334779999999999999988876 788999998876 18899999887 55666666 8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc-ce
Q 015435 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GA 264 (407)
Q Consensus 186 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~ 264 (407)
+|+||||.+++ +++|+++|++||+++|+|++|..+.+.. .. . .+..+++.|+||.++.+|+|+ ||
T Consensus 157 ~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~----~~------~-~~~di~~~s~sK~~~~~g~~~~G~ 222 (398)
T 2rfv_A 157 TPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ----PL------Q-LGADIVVHSVTKYINGHGDVIGGI 222 (398)
T ss_dssp SSBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC----GG------G-GTCSEEEEETTTTTTCSSCCCCEE
T ss_pred CCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC----ch------h-hCCcEEEEeCcccccCCCCceEEE
Confidence 99999999986 8888999999999999999998776531 11 1 246789999999999999998 88
Q ss_pred eEEeecChhhHHHHHHHHhhhhhcc-cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435 265 LSIVCKTEDVASRVESQLKLVIRPM-YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR 339 (407)
Q Consensus 265 ~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 339 (407)
+ +++ ++..+ ..+....... ..+.+.+.+.++...++... ...++..++.+.+.+.+++.
T Consensus 223 ~--~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~l~~~l~~~ 282 (398)
T 2rfv_A 223 I--VGK-QEFID---QARFVGLKDITGGCMSPFNAWLTLRGVKTLG----------IRMERHCENALKIARFLEGH 282 (398)
T ss_dssp E--EEC-HHHHH---HHHHTHHHHTTCCCCCHHHHHHHHHHHTTHH----------HHHHHHHHHHHHHHHHHHTC
T ss_pred E--EEC-HHHHH---HHHHHHHHhCCCCCCCHHHHHHHHhhhhhHH----------HHHHHHHHHHHHHHHHHHcC
Confidence 8 565 33222 1333333333 34677788888887776432 22233445666666666654
No 151
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.95 E-value=7.1e-27 Score=218.74 Aligned_cols=285 Identities=14% Similarity=0.125 Sum_probs=198.9
Q ss_pred CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCCh--HHHHhhcCceeeE
Q 015435 75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNH--PKVFTLAGLSVKT 152 (407)
Q Consensus 75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~--~~~~~~~G~~~~~ 152 (407)
.+..++++.+++++ +.. .+++++++ |+|+++++.+++ ...+ . |+|++++++|+++ ...++..|.+++.
T Consensus 33 ~~~~~l~~~la~~~-g~~---~~~~~v~~--t~g~t~a~~~~~--~~~~-~-d~vl~~~~~~~~~~~~~~~~~~g~~~~~ 102 (353)
T 2yrr_A 33 RVNRAIQERLAALF-DPG---EGALVAAL--AGSGSLGMEAGL--ANLD-R-GPVLVLVNGAFSQRVAEMAALHGLDPEV 102 (353)
T ss_dssp HHHHHHHHHHHHHH-CCC---TTCEEEEE--SSCHHHHHHHHH--HTCS-C-CCEEEEECSHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHh-CCC---CCCceEEE--cCCcHHHHHHHH--HHhc-C-CcEEEEcCCCchHHHHHHHHHcCCceEE
Confidence 45789999999988 432 22478999 999999999984 2223 3 8999999988875 4556788999999
Q ss_pred EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435 153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA 232 (407)
Q Consensus 153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~ 232 (407)
++.+ .++.+|++++++.+++. +++++++ ++|+||||.+++ +++|+++|++||+++|+|++|. +.....
T Consensus 103 v~~~--~~~~~d~~~l~~~l~~~-~~~~v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~D~a~~-~~~~~~---- 170 (353)
T 2yrr_A 103 LDFP--PGEPVDPEAVARALKRR-RYRMVAL-VHGETSTGVLNP---AEAIGALAKEAGALFFLDAVTT-LGMLPF---- 170 (353)
T ss_dssp EECC--TTSCCCHHHHHHHHHHS-CCSEEEE-ESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTT-TTTSCC----
T ss_pred EeCC--CCCCCCHHHHHHHHHhC-CCCEEEE-EccCCCcceecC---HHHHHHHHHHcCCeEEEEcCcc-cccccc----
Confidence 9983 34679999999999832 5677766 899999999887 6688888999999999999995 332211
Q ss_pred HHHHHHHHcCCcEEEEEecCccc-cccCCCcceeEEeecChhhHHHHHHHHh-------------hh--hhcccCCCChh
Q 015435 233 QSVRMFVADGGECLVAQSYAKNM-GLYGERVGALSIVCKTEDVASRVESQLK-------------LV--IRPMYSSPPIH 296 (407)
Q Consensus 233 ~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~v~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~ 296 (407)
++..+ +..+++.|++|.+ +.+| +||+ +++ ++ +.+.+. .. ......+++..
T Consensus 171 -~~~~~----~~d~~~~s~~K~~~~~~g--~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (353)
T 2yrr_A 171 -SMRAM----GVDYAFTGSQKCLSAPPG--LAPI--AAS-LE----ARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVL 236 (353)
T ss_dssp -CHHHH----TCSEEECCTTSTTCCCSS--CEEE--EEC-HH----HHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHH
T ss_pred -ccccc----CceEEEecCcccccCCCc--eEEE--EEC-HH----HHHHhccCCCccccHHHHhhhhhcCCCCCCCCHH
Confidence 12211 2357788999965 4455 6998 565 33 333332 00 11122355666
Q ss_pred HHHHHHHHhcChhhHHhHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC--ceeEEec----CCCHHHHHHhH
Q 015435 297 GASIVATILKDSTMYKEWTLE-LKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ--IGMFTFT----GLNSEQVAFMT 369 (407)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~l 369 (407)
.+.++..+++.. .+. +++.+++++++++++.+.|++.+ +.+..+. ++++.++ +.+.+.+.+.|
T Consensus 237 ~~~a~~~al~~~------~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 306 (353)
T 2yrr_A 237 LHYALLEALDLV------LEEGVAARERRAREVYAWVLEELKARG----FRPYPKASPLPTVLVVRPPEGVDADRLVRAL 306 (353)
T ss_dssp HHHHHHHHHHHH------HHHCHHHHHHHHHHHHHHHHHHHHHTT----CEESCSSSBCTTEEEEECCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHCC----CccccCccCCCeEEEEECCCCCCHHHHHHHH
Confidence 666665555422 122 66788899999999999998875 5554442 4444444 33566665555
Q ss_pred hhccEEEcCC------C--eEEe-cCCCCCChh-HHHHHHHHHHHh
Q 015435 370 KEYHIYMTSD------G--RISM-AGLSSKTVP-HLTDAIHAAVTR 405 (407)
Q Consensus 370 ~~~gi~~~~g------g--Ris~-~~~~~e~i~-~~~~~l~~~l~~ 405 (407)
.++||.+.+| + ||++ ...++++++ +++++|+++++.
T Consensus 307 ~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 307 YAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp HHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred HHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 6679999875 2 9998 335889999 999999998864
No 152
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.95 E-value=6.2e-27 Score=225.08 Aligned_cols=327 Identities=13% Similarity=0.030 Sum_probs=208.7
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
..+..+|||+.|.+..+.| +.++.+++++.+++. ......| +.....++++.+++++ + ..+++++ |+
T Consensus 49 ~~g~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~--~~~~~~~-~~~~~~~l~~~l~~~~-~------~~~~v~~--~~ 115 (424)
T 2e7u_A 49 ADGNRYLDYVMSWGPLILG-HAHPKVLARVRETLE--RGLTFGA-PSPLEVALAKKVKRAY-P------FVDLVRF--VN 115 (424)
T ss_dssp TTCCEEEESSGGGTTCTTC-BTCHHHHHHHHHHHH--TCSCCSS-CCHHHHHHHHHHHHHC-T------TCCEEEE--ES
T ss_pred CCCCEEEEccccccccccC-CCCHHHHHHHHHHHH--hCCCCCC-CCHHHHHHHHHHHHhC-C------CCCEEEE--eC
Confidence 3567899999987544456 456677777777775 2222233 2233455666666654 2 2489999 99
Q ss_pred CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-h-------------cCc------eeeEEEeecCCCCCcChhh
Q 015435 108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-L-------------AGL------SVKTYRYYDPATRGLNFQG 167 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-~-------------~G~------~~~~v~~~~~~~~~~d~~~ 167 (407)
||+++++.++++...+.+++.|++.+|+|+++..... . .|+ ++..++. .|+++
T Consensus 116 ~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~ 188 (424)
T 2e7u_A 116 SGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEG 188 (424)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHH
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHH
Confidence 9999999997654445567899999999988765332 1 122 2333322 38899
Q ss_pred HHHHHHcCCCCcEEEEecCCCCC-CCCCC-CHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcE
Q 015435 168 LLEDLRAAPSGAIVLLHACAHNP-TGVDP-TLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGEC 245 (407)
Q Consensus 168 l~~~i~~~~~~~~v~i~~~p~NP-tG~~~-~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (407)
+++.+.+.+.+..+++ ++|+|| ||.+. +++++++|.++ ++||++||+||+|.++ ..+ .......+ ....++
T Consensus 189 le~~l~~~~~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g---~~~~~~~~-~~~~di 261 (424)
T 2e7u_A 189 LREVLKRRGEEIAAII-FEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLA---FGGATELL-GLKPDL 261 (424)
T ss_dssp HHHHHHHHGGGEEEEE-ECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSS---TTHHHHHH-TCCCSE
T ss_pred HHHHHHhCCCCEEEEE-EeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccc---hhHHHHHh-CCCcch
Confidence 9998863212334444 456665 89764 79999999999 9999999999999988 432 12222222 212232
Q ss_pred EEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh---hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHH
Q 015435 246 LVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI---RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMA 322 (407)
Q Consensus 246 i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 322 (407)
.||||.++ +|+|+||+ +++ +++.+.+.... ...+++.+++++.++.++++... + .++..
T Consensus 262 ---~s~sK~l~-~G~~~G~~--~~~-----~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------~-~~~~~ 323 (424)
T 2e7u_A 262 ---VTLGKILG-GGLPAAAY--AGR-----REIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLE------E-NPGYY 323 (424)
T ss_dssp ---EEECGGGG-TTSSCEEE--EEC-----HHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHH------H-CTHHH
T ss_pred ---hhhhhhhh-CCcceEEE--EEc-----HHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHH------h-ccHHH
Confidence 38999999 59999999 566 44555444311 12234677888888887776321 1 13456
Q ss_pred HHHHHHHHHHHHHHHhc----CCCCCcccccCCceeEEecCCC-----------------HHHHHHhHhhccEEEcCCC-
Q 015435 323 DRIISMRQQLFDALSAR----GTPGDWSHIIKQIGMFTFTGLN-----------------SEQVAFMTKEYHIYMTSDG- 380 (407)
Q Consensus 323 ~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gi~~~~gg- 380 (407)
++++++++++.+.|+++ +. .....+.|. +.|+.+. ...+.+.|.++||.+.+++
T Consensus 324 ~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 399 (424)
T 2e7u_A 324 AYLEDLGARLEAGLKEVLKEKGL---PHTVNRVGS-MITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNF 399 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC---CCEEEEETT-EEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC---ceEEEeece-EEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCC
Confidence 67777777777777664 42 112334444 5555432 1234444446899999986
Q ss_pred -eEEecC-CCCCChhHHHHHHHHHH
Q 015435 381 -RISMAG-LSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 381 -Ris~~~-~~~e~i~~~~~~l~~~l 403 (407)
|+.+.. .+++++++++++|++++
T Consensus 400 ~~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 400 EAAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp SCEECCTTCCHHHHHHHHHHHHHHC
T ss_pred CceEeeccCCHHHHHHHHHHHHHhC
Confidence 544332 48899999999998763
No 153
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.95 E-value=8.1e-27 Score=220.54 Aligned_cols=289 Identities=15% Similarity=0.143 Sum_probs=192.7
Q ss_pred cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH--HHHhhcCceeeEEE
Q 015435 77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP--KVFTLAGLSVKTYR 154 (407)
Q Consensus 77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~--~~~~~~G~~~~~v~ 154 (407)
..++++.+++++ +.. .+.+.+++ |+||++++++++ ...+.+||+|++++|.|.++. ..+...|.+++.++
T Consensus 54 ~~~~~~~la~~~-g~~---~~~~~i~~--~~ggt~al~~~~--~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~ 125 (376)
T 3f0h_A 54 MLENEKFMLEYA-KAP---EGSKAVFM--TCSSTGSMEAVV--MNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALK 125 (376)
T ss_dssp HHHHHHHHHHHH-TCC---TTCEEEEE--SSCHHHHHHHHH--HHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHh-CCC---CCceEEEE--cCChhHHHHHHH--HhccCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEe
Confidence 455666677766 432 11234666 889999999995 344789999999998776554 34667899999998
Q ss_pred eecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHH
Q 015435 155 YYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQS 234 (407)
Q Consensus 155 ~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~ 234 (407)
. +.++.+|++++++.+. ++++++++ ++|+||||.+++ +++|+++|++||+++|+|+++..+... . +
T Consensus 126 ~--~~~~~~d~~~l~~~~~--~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~-~--~--- 191 (376)
T 3f0h_A 126 L--EHGKKLTKEKLYEYDN--QNFTGLLV-NVDETSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFLADP-F--N--- 191 (376)
T ss_dssp C--CTTCCCCHHHHHTTTT--SCCCEEEE-ESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSC-C--C---
T ss_pred C--CCCCCCCHHHHHHhhc--cCceEEEE-ecccCCcceecC---HHHHHHHHHHcCCEEEEEcCccccCcc-c--c---
Confidence 8 3457899999998765 56777776 889999999998 888899999999999999998765532 1 1
Q ss_pred HHHHHHcCCcEEEEEecCcccc-ccCCCcceeEEeecChhhHHHHHHHH------------hhhh-hcccCCCChhHHHH
Q 015435 235 VRMFVADGGECLVAQSYAKNMG-LYGERVGALSIVCKTEDVASRVESQL------------KLVI-RPMYSSPPIHGASI 300 (407)
Q Consensus 235 ~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~v~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~~~~~ 300 (407)
+.. .+..+++.|+||.++ ++| +|++ +++ +++.+.+.... .... .....+++...+.+
T Consensus 192 ~~~----~~~d~~~~s~~K~l~~~~G--~g~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 262 (376)
T 3f0h_A 192 MNE----CGADVMITGSQKVLACPPG--ISVI--VLA-PRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQ 262 (376)
T ss_dssp HHH----HTCSEEEEETTTTTCCCSS--CEEE--EEC-HHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHH
T ss_pred ccc----cCccEEEecCcccccCCCc--eEEE--EEC-HHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHH
Confidence 111 123588899999998 555 5676 454 44443332200 0000 00122334433344
Q ss_pred HHHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC--CceeEEec--CCCHHHHH-HhHhhccE
Q 015435 301 VATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTPGDWSHIIK--QIGMFTFT--GLNSEQVA-FMTKEYHI 374 (407)
Q Consensus 301 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~-~~l~~~gi 374 (407)
+..+++... .. .+++.+++++++++++.+.|++.+ +.+..+ ...++.+. +.+.+.+. .+++++||
T Consensus 263 ~~~al~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi 333 (376)
T 3f0h_A 263 INERLKEIK-----KHGGADAEVARIASQAADFRAKIKDLP----FELVSESPANGVTSVHPTTANAYDIFLKLKDEYGI 333 (376)
T ss_dssp HHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHTTTSS----EEECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSE
T ss_pred HHHHHHHHH-----HhcCHHHHHHHHHHHHHHHHHHHHHcC----CccCccccCceEEEEeCCCCCHHHHHHHHHHhCCE
Confidence 444443211 01 367788888999999999998876 444432 23333333 45666555 45454599
Q ss_pred EEcCCC--------eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435 375 YMTSDG--------RISMAG-LSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 375 ~~~~gg--------Ris~~~-~~~e~i~~~~~~l~~~l~~ 405 (407)
.+.+|. ||++.. .+++++++++++|++++++
T Consensus 334 ~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 334 WICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp ECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred EEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 998752 999864 5789999999999999864
No 154
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.95 E-value=2.9e-26 Score=216.47 Aligned_cols=322 Identities=12% Similarity=0.048 Sum_probs=200.2
Q ss_pred CCC-CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 29 TSP-VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 29 ~~~-~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
.+. +++|++.|.+ .. +.++.+++++. . ..+| ..-...+++.+++++ +.. +++++++ |+
T Consensus 25 ~g~~~v~~~~~~~~---~~-~~~~~v~~a~~---~-----~~~~--~~~~~~~~~~~a~~~-g~~----~~~~~~~--~~ 83 (374)
T 2aeu_A 25 KGRDALYDLSGLSG---GF-LIDEKDKALLN---T-----YIGS--SYFAEKVNEYGLKHL-GGD----ENDKCVG--FN 83 (374)
T ss_dssp TCGGGCEECSSCCC---CC-CCCHHHHHHHT---S-----TTHH--HHHHHHHHHHHHHHH-TCC----TTEEEEE--ES
T ss_pred cCccceeeecccCC---CC-CCCHHHHHHHH---H-----hcCc--hHHHHHHHHHHHHHh-CCC----CcceEEE--Ec
Confidence 344 6889998763 22 44444444432 1 1111 111134444455554 431 2368888 99
Q ss_pred CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH---HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcE-EEE
Q 015435 108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK---VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAI-VLL 183 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~-v~i 183 (407)
||++++.+++. .+ +||+|+++.|+|+++.. .++..|.+++.+ .|++++++. . +++++ +++
T Consensus 84 ggt~a~~~~~~---~~-~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~~~l~~~-~--~~~~~~v~~ 147 (374)
T 2aeu_A 84 RTSSAILATIL---AL-KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNK-I--DKDTLVIIT 147 (374)
T ss_dssp SHHHHHHHHHH---HH-CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTT-C--CTTEEEEEE
T ss_pred ChHHHHHHHHH---hC-CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCHHHHHhc-C--CCccEEEEE
Confidence 99999999843 34 99999999999887655 567889988877 277888876 4 56777 655
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcc
Q 015435 184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVG 263 (407)
Q Consensus 184 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 263 (407)
++|+||||. +..++++|+++|++||+++|+|++|..+..+... ..... .+ ...++++|+||.+ +|+|+|
T Consensus 148 -~~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~~-~~----~~di~~~S~sK~l--~g~~~G 216 (374)
T 2aeu_A 148 -GSTMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFN-QPPAL-KL----GADLVVTSTDKLM--EGPRGG 216 (374)
T ss_dssp -CBCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTT-CCCHH-HH----TCSEEEEETTSSS--SSCSCE
T ss_pred -ccCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCcccccccccc-cCCcc-cc----CCcEEEecCcccc--cCcceE
Confidence 899999996 6899999999999999999999998766410000 00011 11 2358889999985 578999
Q ss_pred eeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015435 264 ALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPG 343 (407)
Q Consensus 264 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 343 (407)
|+ +++ ++ +.+.+.........+++.+.+.++...++.... +.+.+..++.+...++.++.+.+.|.......
T Consensus 217 ~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 288 (374)
T 2aeu_A 217 LL--AGK-KE----LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNL-ERIRKAFERAKNFDLSKIEKLNKELKAIDDNI 288 (374)
T ss_dssp EE--EEE-HH----HHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCH-HHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTE
T ss_pred EE--EEC-HH----HHHHHHHhhccccCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 98 465 44 444444443333345677788877777764320 01111111111111122456666665431000
Q ss_pred Cccc-ccCCceeEEecCCCH--H------HHHHhHhhccEEEcCCC---------eEEecCC--CCCChhHHHHHHHHHH
Q 015435 344 DWSH-IIKQIGMFTFTGLNS--E------QVAFMTKEYHIYMTSDG---------RISMAGL--SSKTVPHLTDAIHAAV 403 (407)
Q Consensus 344 ~~~~-~~~~~~~~~~~~~~~--~------~~~~~l~~~gi~~~~gg---------Ris~~~~--~~e~i~~~~~~l~~~l 403 (407)
++.+ ..+.+.++.|..... + ++.++++++||.+.||. ||+++.. .+.+++++.+.|++++
T Consensus 289 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l 368 (374)
T 2aeu_A 289 NIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESI 368 (374)
T ss_dssp EEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHH
T ss_pred CcceeeCCceEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHH
Confidence 1444 355666666654432 1 44577788999998851 9998742 2345889999999888
Q ss_pred Hhh
Q 015435 404 TRM 406 (407)
Q Consensus 404 ~~~ 406 (407)
+++
T Consensus 369 ~~~ 371 (374)
T 2aeu_A 369 KMA 371 (374)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 155
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.95 E-value=4.5e-26 Score=216.49 Aligned_cols=305 Identities=12% Similarity=0.000 Sum_probs=204.6
Q ss_pred chhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-hcCCCeE
Q 015435 51 LNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR-HYHQLTI 129 (407)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~-~~~gd~V 129 (407)
+.+.+++.+.+. .. ...|.+..+..++++++++++ +.. +.|++ ++| |+++.+++ ... +.+||+|
T Consensus 17 ~~~~~a~~~~l~--~~-~~~~~~~~~~~~l~~~la~~~-~~~------~~i~~--~sG-t~al~~~l--~~l~~~~gd~V 81 (388)
T 1b9h_A 17 DAERNGLVRALE--QG-QWWRMGGDEVNSFEREFAAHH-GAA------HALAV--TNG-THALELAL--QVMGVGPGTEV 81 (388)
T ss_dssp HHHHHHHHHHHH--TS-CCBTTTCSHHHHHHHHHHHHT-TCS------EEEEE--SCH-HHHHHHHH--HHTTCCTTCEE
T ss_pred HHHHHHHHHHHH--cC-CeeecCCHHHHHHHHHHHHHh-CCC------eEEEe--CCH-HHHHHHHH--HHcCCCCcCEE
Confidence 566666666665 22 235667788999999999998 431 45555 655 89999984 333 5789999
Q ss_pred EecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHH
Q 015435 130 YIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRS 209 (407)
Q Consensus 130 i~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~ 209 (407)
+++.|+|..+...++..|++++.++++ +.++.+|++++++.+. +++++++ |+||||.+.+ +++|+++|++
T Consensus 82 i~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~i~--~~~~~v~----~~n~tG~~~~---l~~i~~la~~ 151 (388)
T 1b9h_A 82 IVPAFTFISSSQAAQRLGAVTVPVDVD-AATYNLDPEAVAAAVT--PRTKVIM----PVHMAGLMAD---MDALAKISAD 151 (388)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCC--TTEEEEC----CBCGGGCCCC---HHHHHHHHHH
T ss_pred EECCCccHHHHHHHHHcCCEEEEEecC-CCcCCCCHHHHHHhcC--cCceEEE----EeCCccCcCC---HHHHHHHHHH
Confidence 999999999999999999999999984 4457899999999986 4444433 7999999864 7888888999
Q ss_pred cCceeeeccccccc-cCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhh--HHHHHHHHhhhh
Q 015435 210 KGLLPFFDSAYQGF-ASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDV--ASRVESQLKLVI 286 (407)
Q Consensus 210 ~~~~li~D~~y~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~--~~~~~~~~~~~~ 286 (407)
||+++|+|++|+.+ .+.+. + +... ..+.+.||||..+++|.|+||+ +++++++ .+.+........
T Consensus 152 ~~~~li~D~a~~~g~~~~~~--~------~~~~--~~i~~~S~s~~K~l~g~~~G~~--~~~~~~~~~~~~~~~~~~~~~ 219 (388)
T 1b9h_A 152 TGVPLLQDAAHAHGARWQGK--R------VGEL--DSIATFSFQNGKLMTAGEGGAV--VFPDGETEKYETAFLRHSCGR 219 (388)
T ss_dssp HTCCBCEECTTCTTCEETTE--E------GGGS--SSCEEEECCTTSSSCSSSCEEE--EECTTCHHHHHHHHHHTBTTC
T ss_pred cCCEEEEecchhcCCccCCe--e------cccc--cceEEEEccCCCcccCCCeEEE--EECCHHHHHHHHHHHHHhCCC
Confidence 99999999999753 33221 1 1111 2578889997777777899998 5775544 343332111100
Q ss_pred h-----c-----ccC-CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc------
Q 015435 287 R-----P-----MYS-SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII------ 349 (407)
Q Consensus 287 ~-----~-----~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------ 349 (407)
. . .+. ..+.+...++...+ +.+++.+++++++++++.+.|++++. +.+..
T Consensus 220 ~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~----------~~l~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~ 286 (388)
T 1b9h_A 220 PRDDRRYFHKIAGSNMRLNEFSASVLRAQL----------ARLDEQIAVRDERWTLLSRLLGAIDG---VVPQGGDVRAD 286 (388)
T ss_dssp CTTCSSCCCCSCCCBCBCBHHHHHHHHHHH----------TTHHHHHHHHHHHHHHHHHHHHTSTT---CEECCCCTTCC
T ss_pred CccCccceeecccccCCcCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhccCCC---ccccCCCcCCC
Confidence 0 0 000 12222222222222 22455667788889999999988732 44443
Q ss_pred CCceeEEecCCC------HHHHHHhHhhccEEEcCC---------------------------C----------eEEecC
Q 015435 350 KQIGMFTFTGLN------SEQVAFMTKEYHIYMTSD---------------------------G----------RISMAG 386 (407)
Q Consensus 350 ~~~~~~~~~~~~------~~~~~~~l~~~gi~~~~g---------------------------g----------Ris~~~ 386 (407)
+.++++.|+.+. .+.+...|.++||.+.++ + ||++..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 366 (388)
T 1b9h_A 287 RNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRV 366 (388)
T ss_dssp BCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGG
T ss_pred ccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCC
Confidence 345667766442 334555555689988542 0 555543
Q ss_pred -C-CCCChhHHHHHHHHHHHh
Q 015435 387 -L-SSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 387 -~-~~e~i~~~~~~l~~~l~~ 405 (407)
+ +++|++++++.|++++++
T Consensus 367 ~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 367 LLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp GGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 5 788999999999998865
No 156
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.95 E-value=8.7e-27 Score=225.46 Aligned_cols=343 Identities=11% Similarity=0.029 Sum_probs=216.9
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhH-H-HHHH---HHhcccccc-ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCce
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVV-R-KAEQ---LLVNDQSRV-KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRV 101 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~-~-~~~~---~~~~~~~~~-~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i 101 (407)
..+..++||+.|.+..+.| +.++.++ + ++.+ ++. ..... ..| +.....++++.+++++ +. ...++|
T Consensus 51 ~~g~~ylD~~~~~~~~~lG-~~~p~v~~~~A~~~~~~~~~-~~~~~~~~~-~~~~~~~la~~la~~~-~~----~~~~~v 122 (449)
T 2cjg_A 51 ITGRRYLDMFTFVASSALG-MNPPALVDDREFHAELMQAA-LNKPSNSDV-YSVAMARFVETFARVL-GD----PALPHL 122 (449)
T ss_dssp TTCCEEEESSHHHHTCSSC-BSCHHHHTCHHHHHHHHHHH-TCCCCTTTC-CCHHHHHHHHHHHHHH-CC----TTCCEE
T ss_pred CCCcEEEEccCCccccCCC-CCCHHHHHHHHHHHHHHHHH-hcCCCCccc-CCHHHHHHHHHHHHhc-CC----CCCCEE
Confidence 3567899998887644556 4466666 6 7777 664 11111 113 2334567788888877 31 234899
Q ss_pred EEeecCCcccHHHHHHHHHHhh-c-----------CCCeEEecCCCCCChHHHHhh-cC--------c-----eeeEEEe
Q 015435 102 TTVQCLSGTGSLRVGAEFLARH-Y-----------HQLTIYIPQPTWGNHPKVFTL-AG--------L-----SVKTYRY 155 (407)
Q Consensus 102 ~~~~t~g~t~a~~~~~~~~~~~-~-----------~gd~Vi~~~p~y~~~~~~~~~-~G--------~-----~~~~v~~ 155 (407)
++ |+||++|++.+++++..+ . +||+|++.+|+|+++...... .| . +++.+|.
T Consensus 123 ~~--~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (449)
T 2cjg_A 123 FF--VEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPY 200 (449)
T ss_dssp EE--ESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCC
T ss_pred EE--eCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcC
Confidence 99 999999999997665432 1 289999999999887553322 22 1 4555555
Q ss_pred ecCCCC--------CcChhhHHHHHHcC-CCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 156 YDPATR--------GLNFQGLLEDLRAA-PSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 156 ~~~~~~--------~~d~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++... ..+++++++.+.+. ++++++++ ++.+||||. +++++++++|+++|++||++||+||+|.++++
T Consensus 201 ~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~ 279 (449)
T 2cjg_A 201 MRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVA-EPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGL 279 (449)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEE-CSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred CCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEE-eCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCc
Confidence 320011 14566688888642 33445444 555789995 89999999999999999999999999998877
Q ss_pred CCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHH-HHhhhhhcccCCCChhHHHHHHHH
Q 015435 226 GSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVES-QLKLVIRPMYSSPPIHGASIVATI 304 (407)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 304 (407)
.+. .+....+ ....++ .+|||.+ |+||+ +++ +++.+.+.. .........+++++++++.++.++
T Consensus 280 ~g~---~~~~~~~-~~~~di---~t~sK~l-----~iG~~--~~~-~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aa 344 (449)
T 2cjg_A 280 TGT---AWAYQQL-DVAPDI---VAFGKKT-----QVCGV--MAG-RRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRI 344 (449)
T ss_dssp TSS---SSTHHHH-TCCCSE---EEECGGG-----SSEEE--EEC-GGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHH
T ss_pred cCc---ceeeccc-CCCceE---EEecCcc-----cEEEE--EEC-HHHhhhhhhcccCCcccccCCCCCHHHHHHHHHH
Confidence 542 1222222 222233 3689987 79999 565 343332111 011122224457788889888888
Q ss_pred hcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCcccccCCceeEEecCCC----HH-HHHHhHhhccEEEc
Q 015435 305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR--GTPGDWSHIIKQIGMFTFTGLN----SE-QVAFMTKEYHIYMT 377 (407)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~l~~~gi~~~ 377 (407)
++... + +...++++++++++.+.|+++ +.+..+....+.+.++. +.+. .+ +...++ ++||.+.
T Consensus 345 l~~~~------~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~l~-~~Gv~v~ 414 (449)
T 2cjg_A 345 LEVIE------A--EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCA-FSLPTTADRDELIRQLW-QRAVIVL 414 (449)
T ss_dssp HHHHH------H--HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEE-EECSSHHHHHHHHHHHH-HTTEECE
T ss_pred HHHHH------h--ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEE-EEECChHHHHHHHHHHH-HCCeEEe
Confidence 76321 1 245577778888888888765 21110223445555554 4542 22 344555 5899999
Q ss_pred CCC----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 378 SDG----RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 378 ~gg----Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
++| ||+++. .+++++++++++|+++++++
T Consensus 415 ~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 415 PAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp EETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 875 886543 48899999999999998764
No 157
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.95 E-value=5.6e-26 Score=217.12 Aligned_cols=324 Identities=15% Similarity=0.160 Sum_probs=213.0
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCC---CcHH--HHH-----HHHHHHhCCCCCCCCCCc
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIV---GLVD--FNK-----LSAKLILGADSPAIKDNR 100 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~---g~~~--l~~-----~~a~~~~~~~~~~~~~~~ 100 (407)
.++|||+.|.. +.++.+.+++.+.+. ......|+... |.+. +++ .+++++ +. ++++
T Consensus 23 ~~~i~~~~~~~------~~~~~v~~a~~~~~~--~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~-g~-----~~~~ 88 (407)
T 2dkj_A 23 REGLELIASEN------FVSKQVREAVGSVLT--NKYAEGYPGARYYGGCEVIDRVESLAIERAKALF-GA-----AWAN 88 (407)
T ss_dssp HTSEECCTTCC------CCCHHHHHHHTSGGG--GCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-TC-----SEEE
T ss_pred hcceeeccCCC------CCCHHHHHHHHhhhh--cCcccCCCcccccCCchHHHHHHHHHHHHHHHHh-CC-----Ccce
Confidence 57899998863 445566666655553 11223453322 4332 333 666666 43 1234
Q ss_pred eEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH---HHHhhcCceeeEEEee-cCCCCCcChhhHHHHHHcCC
Q 015435 101 VTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP---KVFTLAGLSVKTYRYY-DPATRGLNFQGLLEDLRAAP 176 (407)
Q Consensus 101 i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~---~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~ 176 (407)
+++ ++| ++++.++++.+ +.+||+|++++|+|..+. ..++..|..++.+++. ++.++.+|++++++.+.+ +
T Consensus 89 i~~--~sG-t~a~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~ 162 (407)
T 2dkj_A 89 VQP--HSG-SQANMAVYMAL--MEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALE-H 162 (407)
T ss_dssp CCC--SSH-HHHHHHHHHHH--CCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHH-H
T ss_pred EEe--cch-HHHHHHHHHHh--cCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhh-c
Confidence 544 554 56999985444 779999999999999883 5556667755555542 234578999999999973 1
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccccc-ccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435 177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQG-FASGSLDADAQSVRMFVADGGECLVAQSYAKNM 255 (407)
Q Consensus 177 ~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 255 (407)
+++++++ ++|+|| ... ++++|+++|++||+++|+|++|.. +.+.+..... + ....++++|+||.
T Consensus 163 ~~~~v~~-~~p~~~--~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~-----~---~~~di~~~s~sK~- 227 (407)
T 2dkj_A 163 RPKVIVA-GASAYP--RFW---DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP-----L---PYAHVVTSTTHKT- 227 (407)
T ss_dssp CCSEEEE-CCSSCC--SCC---CHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC-----T---TTCSEEEEESSGG-
T ss_pred CCeEEEE-eccccC--CCC---CHHHHHHHHHHcCCEEEEEccccccccccCccCCc-----c---ccccEEEEecccc-
Confidence 5677777 899998 444 488999999999999999999986 4433211100 0 1257889999995
Q ss_pred cccCCCcceeEEeecChhhHHHHHHHHhhhhhcccC-CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435 256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYS-SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD 334 (407)
Q Consensus 256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (407)
++|.|+||+ +++++++.+.+.. ....+.. +++...+.++..+++... ...+++.+++++++++++.+
T Consensus 228 -l~g~~~G~~--~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~ 295 (407)
T 2dkj_A 228 -LRGPRGGLI--LSNDPELGKRIDK----LIFPGIQGGPLEHVIAGKAVAFFEAL-----QPEFKEYSRLVVENAKRLAE 295 (407)
T ss_dssp -GCCCSCEEE--EESCHHHHHHHHH----HHTTTTCSSCCHHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCCceEE--EECCHHHHHHHHh----hhcccccCCCcHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHH
Confidence 468899999 5765666555443 2222222 334333334444444211 14467788899999999999
Q ss_pred HHHhcCCCCCccccc-CCceeEEecCC-----CHHHHHHhHhhccEEEcCC------------C--eEEecC-----CCC
Q 015435 335 ALSARGTPGDWSHII-KQIGMFTFTGL-----NSEQVAFMTKEYHIYMTSD------------G--RISMAG-----LSS 389 (407)
Q Consensus 335 ~l~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~g------------g--Ris~~~-----~~~ 389 (407)
.|++.+ +.+.. +..+.+.|+.+ +.+.+.+.|.++||.+.++ + ||+++. .++
T Consensus 296 ~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~ 371 (407)
T 2dkj_A 296 ELARRG----YRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTP 371 (407)
T ss_dssp HHHHTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCG
T ss_pred HHHhCC----ceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCH
Confidence 999886 55543 34556666543 5566666677799998763 1 998852 489
Q ss_pred CChhHHHHHHHHHHHh
Q 015435 390 KTVPHLTDAIHAAVTR 405 (407)
Q Consensus 390 e~i~~~~~~l~~~l~~ 405 (407)
+++++++++|++++++
T Consensus 372 ~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 372 EEMPLVAELIDRALLE 387 (407)
T ss_dssp GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998865
No 158
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.95 E-value=1.1e-27 Score=228.45 Aligned_cols=314 Identities=16% Similarity=0.095 Sum_probs=191.8
Q ss_pred cccchhHHHHHHHHhccccccc-cCC----CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh
Q 015435 48 PLVLNVVRKAEQLLVNDQSRVK-EYL----PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR 122 (407)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~-~y~----~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~ 122 (407)
+.++.+++++.+.+.+...... .|. ......++++.+++++ +. ++++|++ |+|+++++.+++.. .
T Consensus 31 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~~-----~~~~v~~--~~g~t~al~~~~~~--l 100 (400)
T 3vax_A 31 RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTV-SA-----EPDELIF--TSGATESNNIALLG--L 100 (400)
T ss_dssp SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHT-TC-----CGGGEEE--ESCHHHHHHHHHHT--T
T ss_pred CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHc-CC-----CCCcEEE--eCCHHHHHHHHHHH--H
Confidence 5566666666666541000000 111 1223567788888877 42 2478999 99999999999533 3
Q ss_pred h----cCCC-eEEecCCCCCChHHHHhh---cCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCC
Q 015435 123 H----YHQL-TIYIPQPTWGNHPKVFTL---AGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVD 194 (407)
Q Consensus 123 ~----~~gd-~Vi~~~p~y~~~~~~~~~---~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~ 194 (407)
+ .+|| +|+++.++|+.+...+.. .|.+++.++.+ .++.+|++++++++. ++++++++ ++|+||||.+
T Consensus 101 ~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~ 175 (400)
T 3vax_A 101 APYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPG--PSGRISVEGVMERLR--PDTLLVSL-MHVNNETGVI 175 (400)
T ss_dssp HHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCC--TTCCCCHHHHHTTCC--TTEEEEEC-CSBCTTTCBB
T ss_pred HHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccC--CCCCcCHHHHHHhcC--CCceEEEE-ECCCCCceee
Confidence 4 6899 999999999988666553 69999999983 357789999999886 45556555 9999999998
Q ss_pred CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEe-ecChh
Q 015435 195 PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIV-CKTED 273 (407)
Q Consensus 195 ~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v-~~~~~ 273 (407)
.+ +++|+++|++||+++|+|++|+..... .. + ... ..+++.|+||.+|.+| +|++ + +++++
T Consensus 176 ~~---l~~i~~la~~~~~~li~D~a~~~~~~~------~~---~-~~~-~d~~~~s~~K~~g~~g--~g~~--~~~~~~~ 237 (400)
T 3vax_A 176 QP---VAELAQQLRATPTYLHVDAAQGYGKVP------GD---L-TTP-IDMISISGHKIGAPKG--VGAL--VTRRREE 237 (400)
T ss_dssp CC---HHHHHHHHTTSSCEEEEECTTTTTTSG------GG---G-GSC-CSEEEEETGGGTSCSS--CEEE--EECBCSS
T ss_pred Cc---HHHHHHHHHhcCCEEEEEhhhhcCCCC------cC---h-hhc-CcEEEEeHHHhCCCCc--eEEE--EEecchh
Confidence 87 678888899999999999998733211 11 1 112 4588999999777555 5666 4 55421
Q ss_pred hH---HHHHHHHhh---hhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 015435 274 VA---SRVESQLKL---VIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH 347 (407)
Q Consensus 274 ~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 347 (407)
+. ..+...+.. .......+++...+.++..+++.. .+.+++.+++++++++++.+.|+ ... +.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~---~~~ 307 (400)
T 3vax_A 238 MDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIF------EAEHAQWQVAAQDLRSRLLAGLA-STS---FQV 307 (400)
T ss_dssp STTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH------HHSHHHHHHHHHHHHHHHHHHHT-TTT---CEE
T ss_pred ccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHhhC-CCC---EEE
Confidence 11 111111100 001122345666666555555422 23467888999999999999998 432 555
Q ss_pred ccCCc----eeEEec--CCCHHHHHHhHhhccEEEcCC-------------------------C--eEEe-cC-CCCCCh
Q 015435 348 IIKQI----GMFTFT--GLNSEQVAFMTKEYHIYMTSD-------------------------G--RISM-AG-LSSKTV 392 (407)
Q Consensus 348 ~~~~~----~~~~~~--~~~~~~~~~~l~~~gi~~~~g-------------------------g--Ris~-~~-~~~e~i 392 (407)
..+.+ +++.+. +.+.+.+.+.|. +||.+.+| + ||++ +. .+++++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i 386 (400)
T 3vax_A 308 NGDQDHVVPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDV 386 (400)
T ss_dssp CSCTTSBCTTEEEEECTTCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC-------
T ss_pred eCCcccCCCCEEEEEeCCCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHH
Confidence 54443 333332 456666666667 89988774 4 9999 63 478999
Q ss_pred hHHHHHHHHHHHh
Q 015435 393 PHLTDAIHAAVTR 405 (407)
Q Consensus 393 ~~~~~~l~~~l~~ 405 (407)
++++++|++++++
T Consensus 387 ~~~~~~l~~~~~~ 399 (400)
T 3vax_A 387 EELARGVAKLKPS 399 (400)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998764
No 159
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.7e-26 Score=222.83 Aligned_cols=308 Identities=12% Similarity=0.123 Sum_probs=210.2
Q ss_pred cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh---cCC---CeEEecCCCCCChHH
Q 015435 68 VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH---YHQ---LTIYIPQPTWGNHPK 141 (407)
Q Consensus 68 ~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~---~~g---d~Vi~~~p~y~~~~~ 141 (407)
..+|....+..++++.+++++....+...+++++++ |+||++++.+++..+... .+| |+|+++.|+|..+..
T Consensus 96 ~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~--~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~ 173 (497)
T 3mc6_A 96 QLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTT--TSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDK 173 (497)
T ss_dssp TTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEE--ESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHH
T ss_pred CCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEE--cCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHH
Confidence 344555567777777777776443333333578999 999999999996444221 145 899999999999999
Q ss_pred HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccc
Q 015435 142 VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ 221 (407)
Q Consensus 142 ~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~ 221 (407)
.++..|.+++.+|++ +.++.+|++++++++. ++++++++ ++|+||||.+.+ +++|+++|++||+++|+|++|.
T Consensus 174 ~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~--~~~~~v~~-~~p~nptG~~~~---l~~i~~la~~~g~~livD~a~~ 246 (497)
T 3mc6_A 174 AAYYFGMKLRHVELD-PTTYQVDLGKVKKFIN--KNTVLLVG-SAPNFPHGIADD---IEGLGKIAQKYKLPLHVDSCLG 246 (497)
T ss_dssp HHHHSCCEEEEECBC-TTTCSBCTTTTGGGCC--SSEEEEEE-ETTCTTTCCCCS---CTTTTTHHHHTTCCEEEETTTT
T ss_pred HHHHcCCeEEEEecC-cccCcCCHHHHHHHHh--hCCEEEEE-ECCCCCCCcCCC---HHHHHHHHHHhCCEEEEECcch
Confidence 999999999999984 3367899999999987 45556555 999999999865 7788888999999999999998
Q ss_pred cccCC-----CCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhccc-----C
Q 015435 222 GFASG-----SLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMY-----S 291 (407)
Q Consensus 222 ~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~ 291 (407)
++... +.. ....+. .......+++.|++|.++ +|.++|++ +++++.. .. ........+ .
T Consensus 247 ~~~~~f~~~~~~~-~~~~~~--~~~~g~d~~~~s~~K~l~-~~~~~g~~--~~~~~~~----~~-~~~~~~~~~~~~~~~ 315 (497)
T 3mc6_A 247 SFIVSFMEKAGYK-NLPLLD--FRVPGVTSISCDTHKYGF-APKGSSVI--MYRNSDL----RM-HQYYVNPAWTGGLYG 315 (497)
T ss_dssp HHHHGGGTTTTCC-SCCCCS--TTSTTCCEEEEETTTTTC-CCSSCEEE--ECSSHHH----HT-TTSCCBTTCTTSCBC
T ss_pred hhhhhhhhhhccc-CCcccc--ccCCCCcEEEECchhhcC-CCCCceeE--EecCHHH----Hh-hhhcccccccCCCcC
Confidence 55321 000 000000 011234577889999764 67889999 5764432 11 111111100 0
Q ss_pred CCC---------hhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcccc-cCCceeEEec--
Q 015435 292 SPP---------IHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDWSHI-IKQIGMFTFT-- 358 (407)
Q Consensus 292 ~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~-~~~~~~~~~~-- 358 (407)
.++ ..++.++...+.. ..+++..++..++++++.+.|++ ++. +.+. .+.++++.|.
T Consensus 316 ~~~~~g~~~~~~~~a~~aal~~l~~--------~~~~~~~~~~~~~~~~l~~~L~~~~~g---~~~~~~~~~~~v~~~~~ 384 (497)
T 3mc6_A 316 SPTLAGSRPGAIVVGCWATMVNMGE--------NGYIESCQEIVGAAMKFKKYIQENIPD---LDIMGNPRYSVISFSSK 384 (497)
T ss_dssp CSSSCSSCBHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHSCTT---CEECSCCCSSEEEEECT
T ss_pred CcCcccCCcchhHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHhcCCC---EEEecCCCeeEEEEeCC
Confidence 111 2234444444332 33567778888899999999998 432 5554 4666776665
Q ss_pred CCCHHHHHHhHhhccEEEcCCC-----eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435 359 GLNSEQVAFMTKEYHIYMTSDG-----RISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 359 ~~~~~~~~~~l~~~gi~~~~gg-----Ris~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
+.+...+.+.|.++||.+.+++ |+++...+++++++++++|+++++++
T Consensus 385 ~~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~ 437 (497)
T 3mc6_A 385 TLNIHELSDRLSKKGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQEL 437 (497)
T ss_dssp TTTHHHHHHHHHTTTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 4466667666677899887653 88888668899999999999998754
No 160
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.94 E-value=5.4e-25 Score=216.65 Aligned_cols=307 Identities=13% Similarity=0.078 Sum_probs=204.5
Q ss_pred ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCce--EEeecCCcccHHHHHHHHHHhhcCC--------CeEEecCCCCCC
Q 015435 69 KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRV--TTVQCLSGTGSLRVGAEFLARHYHQ--------LTIYIPQPTWGN 138 (407)
Q Consensus 69 ~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i--~~~~t~g~t~a~~~~~~~~~~~~~g--------d~Vi~~~p~y~~ 138 (407)
..|....+..++++++++++....+...+++++ ++ |+|+++++.++++.+ ..+| |+|+++.|+|..
T Consensus 129 ~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~--t~ggt~a~~~al~a~--~~~g~~~~g~~~d~Vi~~~~~~~~ 204 (514)
T 3mad_A 129 LHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTV--TSGGTESLLLAMKTY--RDWARATKGITAPEAVVPVSAHAA 204 (514)
T ss_dssp TCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEE--ESSHHHHHHHHHHHH--HHHHHHHHCCSSCEEEEETTSCTH
T ss_pred cccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEE--cCcHHHHHHHHHHHH--HHHhhhhcCCCCCeEEEeCccchH
Confidence 344444566677777766664433333333677 88 999999999996544 3344 899999999999
Q ss_pred hHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecc
Q 015435 139 HPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDS 218 (407)
Q Consensus 139 ~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~ 218 (407)
+...++..|.+++.+|++ + ++.+|++++++++. ++++++++ ++|+||||.+.+ +++|+++|++||++||+|+
T Consensus 205 ~~~~~~~~G~~v~~v~~~-~-~~~~d~~~Le~~i~--~~~~~v~~-~~~~nptG~~~~---l~~i~~la~~~~i~livDe 276 (514)
T 3mad_A 205 FDKAAQYFGIKLVRTPLD-A-DYRADVAAMREAIT--PNTVVVAG-SAPGYPHGVVDP---IPEIAALAAEHGIGCHVDA 276 (514)
T ss_dssp HHHHHHHHTCEEEEECBC-T-TSCBCHHHHHHHCC--TTEEEEEE-ETTCTTTCCCCC---HHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHcCCeeEEeeeC-C-CCCCCHHHHHHHhc--cCCEEEEE-eCCCCCCccccC---HHHHHHHHHHhCCeEEEec
Confidence 999999999999999983 3 67899999999997 45666655 899999999876 7888888999999999999
Q ss_pred ccccccCC-----CCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhh------
Q 015435 219 AYQGFASG-----SLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIR------ 287 (407)
Q Consensus 219 ~y~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~------ 287 (407)
+|.++... +.. ...+. .......+++.|++|.++ +|.++|++ +++++.... .......
T Consensus 277 a~~~~~~~~~~~~g~~--~~~~~--~~~~g~d~~~~s~~K~l~-~~~~~g~~--~~~~~~~~~----~~~~~~~~~~~~~ 345 (514)
T 3mad_A 277 CLGGFILPWAERLGYP--VPPFD--FRLEGVTSVSADTHKYGY-GAKGTSVI--LYRRPDLLH----YQYFIAADWPGGL 345 (514)
T ss_dssp TTTTTTHHHHHHTTCC--CCCCS--TTSTTCCEEEECTTTTTC-CCSSCEEE--EESSHHHHT----TTCEEESSCTTCS
T ss_pred ccccccchhHHhcCCC--CCccc--ccCCCCcEEEECchhccC-CCCCeEEE--EEeCHHHhc----cccccccccCCCc
Confidence 99877531 000 00000 011234688899999864 67889999 577543221 1100000
Q ss_pred ---c-ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec--CCC
Q 015435 288 ---P-MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT--GLN 361 (407)
Q Consensus 288 ---~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~ 361 (407)
. ...+.+.....++..++.... ...+++..+++.++++++.+.|++.+. +.+..+..+++.+. +.+
T Consensus 346 ~~~~~~~gs~~~~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~ 417 (514)
T 3mad_A 346 YFSPTFAGSRPGALSATAWAAMLSLG-----EEGYLDATRRILQAADRLKAGVRAIPS---LKILGDPLWVIAVASDELN 417 (514)
T ss_dssp EEESSSCSSCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTT---CEESSCCSSEEEEECSSSC
T ss_pred ccCCccCCCCchHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhhCCC---eEEeCCCeEEEEEeCCCCC
Confidence 0 011222222222222222111 134667788888999999999998742 66665555544443 346
Q ss_pred HHHHHHhHhhccEEEcCC---C--eEEecC--CCCCChhHHHHHHHHHHHhh
Q 015435 362 SEQVAFMTKEYHIYMTSD---G--RISMAG--LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 362 ~~~~~~~l~~~gi~~~~g---g--Ris~~~--~~~e~i~~~~~~l~~~l~~~ 406 (407)
...+.+.|.++||.+... + |+++.. .+++++++++++|+++++++
T Consensus 418 ~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~ 469 (514)
T 3mad_A 418 IYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQV 469 (514)
T ss_dssp HHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 666666666679887321 1 888763 35689999999999998653
No 161
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.94 E-value=2.2e-25 Score=212.01 Aligned_cols=312 Identities=12% Similarity=0.078 Sum_probs=209.6
Q ss_pred CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCccc
Q 015435 32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTG 111 (407)
Q Consensus 32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~ 111 (407)
+.|+|+. | . .|+.+++++.+.+. . ..|.+..+..++++++++++ +. +++++ |+||++
T Consensus 9 ~~i~~~~--p---~---~~~~~~~a~~~~~~--~---~~~~~~~~~~~l~~~la~~~-~~-------~~~~~--~~~gt~ 65 (393)
T 1mdo_A 9 DFLPFSR--P---A---MGAEELAAVKTVLD--S---GWITTGPKNQELEAAFCRLT-GN-------QYAVA--VSSATA 65 (393)
T ss_dssp CCBCSCC--C---C---CCHHHHHHHHHHHH--H---TCCSSSHHHHHHHHHHHHHH-CC-------SEEEE--ESCHHH
T ss_pred cccccCC--C---C---CCHHHHHHHHHHHh--c---CCcCCChHHHHHHHHHHHHh-CC-------CcEEE--ecChHH
Confidence 5677774 3 2 24556666655554 1 12445678999999999999 53 57888 999999
Q ss_pred HHHHHHHHHHh-hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCC
Q 015435 112 SLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNP 190 (407)
Q Consensus 112 a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NP 190 (407)
++.+++ ... +.+||+|+++.|+|..+...++..|.+++.++++ ++++.+|++++++.+. ++++++++ .||
T Consensus 66 al~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~--~~~~~v~~----~~~ 136 (393)
T 1mdo_A 66 GMHIAL--MALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVD-RDTLMVTPEHIEAAIT--PQTKAIIP----VHY 136 (393)
T ss_dssp HHHHHH--HHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCC--TTEEEECC----BCG
T ss_pred HHHHHH--HHcCCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEecc-CCcCCCCHHHHHHhcC--CCceEEEE----eCC
Confidence 999994 334 5799999999999999999999999999999983 4456799999999987 44555554 358
Q ss_pred CCCCCCHHHHHHHHHHHHHcCceeeeccccccc-cCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee
Q 015435 191 TGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGF-ASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC 269 (407)
Q Consensus 191 tG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~ 269 (407)
||.+. ++++|.++|+++|+++|+|++|+.+ .+.+ .. + .. ..+++.|+||..+++|.|+||+ ++
T Consensus 137 ~G~~~---~~~~i~~l~~~~~~~li~D~a~~~g~~~~~---~~-----~-~~--~d~~~~S~~k~K~l~~~~~g~~--~~ 200 (393)
T 1mdo_A 137 AGAPA---DLDAIYALGERYGIPVIEDAAHATGTSYKG---RH-----I-GA--RGTAIFSFHAIKNITCAEGGIV--VT 200 (393)
T ss_dssp GGCCC---CHHHHHHHHHHHTCCBCEECTTCTTCEETT---EE-----T-TS--SSEEEEECCTTSSSCSSSCEEE--EE
T ss_pred CCCcC---CHHHHHHHHHHcCCeEEEECccccCCeECC---ee-----c-CC--CCeEEEeCCCCCccccccceEE--Ee
Confidence 99976 4888888899999999999999853 3321 11 1 11 5788999994444455688998 57
Q ss_pred cChhhHHHHHHHHhhhhh-----------ccc---------CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH
Q 015435 270 KTEDVASRVESQLKLVIR-----------PMY---------SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMR 329 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~-----------~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (407)
+++++.+++......... .+. ...+.+.+.++...++ .+++..++.++++
T Consensus 201 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~----------~~~~~~~~~~~~~ 270 (393)
T 1mdo_A 201 DNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ----------KLDALNARRAAIA 270 (393)
T ss_dssp SCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHH----------THHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 667766665442211100 000 0123333333222222 2344555666788
Q ss_pred HHHHHHHHhcCCCCCcccc-cC-----CceeEEecC-------CCHHHHHHhHhhccEEEcCC-----------------
Q 015435 330 QQLFDALSARGTPGDWSHI-IK-----QIGMFTFTG-------LNSEQVAFMTKEYHIYMTSD----------------- 379 (407)
Q Consensus 330 ~~l~~~l~~~~~~~~~~~~-~~-----~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~g----------------- 379 (407)
+++.+.|++.+ +.+. .+ .++++.|+. .+.+.+.+.|.++||.+.++
T Consensus 271 ~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~ 346 (393)
T 1mdo_A 271 AQYHQAMADLP----FQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTL 346 (393)
T ss_dssp HHHHHHHHTSS----CEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTC
T ss_pred HHHHHHHhcCC----cccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCcc
Confidence 88999998876 3332 11 344445543 35556666666689987652
Q ss_pred -----------C-eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435 380 -----------G-RISMAG-LSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 380 -----------g-Ris~~~-~~~e~i~~~~~~l~~~l~~ 405 (407)
. ||++.. .+++|+++++++|+++++.
T Consensus 347 ~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 347 TLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQ 385 (393)
T ss_dssp CCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred CChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 1 666653 4789999999999998754
No 162
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.94 E-value=1e-25 Score=212.79 Aligned_cols=317 Identities=9% Similarity=0.019 Sum_probs=207.9
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcc
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGT 110 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t 110 (407)
..++|++.|.+ +.+. +.+++.+.+. ...|.+..+..++++.+++++ +. +++++ ++||+
T Consensus 6 ~~~~~l~~~~~------~~~~-~~~~~~~~~~-----~~~~~~~~~~~~l~~~la~~~-~~-------~~~~~--~~~gt 63 (374)
T 3uwc_A 6 VPYSYLERQFA------DIEP-YLNDLREFIK-----TADFTLGAELEKFEKRFAALH-NA-------PHAIG--VGTGT 63 (374)
T ss_dssp BCSCCHHHHTS------SCHH-HHHHHHHHHH-----HTCCSSCHHHHHHHHHHHHHT-TC-------SEEEE--ESCHH
T ss_pred ceeeccccCCC------CchH-HHHHHHHHHH-----cCCcccChhHHHHHHHHHHHh-CC-------CcEEE--eCCHH
Confidence 35677777753 2222 4444444443 234777889999999999998 43 47888 99999
Q ss_pred cHHHHHHHHHHh-hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCC
Q 015435 111 GSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHN 189 (407)
Q Consensus 111 ~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~N 189 (407)
+++.+++ ... +.+||+|+++.|+|..+...++..|.+++.++.+ .++.+|++++++.+. +++++++ |+|
T Consensus 64 ~a~~~~~--~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~--~~~~~v~----~~n 133 (374)
T 3uwc_A 64 DALAMSF--KMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAIT--DKTKAIM----PVH 133 (374)
T ss_dssp HHHHHHH--HHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCC--TTEEEEC----CBC
T ss_pred HHHHHHH--HHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCC--CCceEEE----EeC
Confidence 9999884 444 6799999999999999999999999999999983 567899999999886 4444433 789
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecC--ccccccCCCcceeEE
Q 015435 190 PTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYA--KNMGLYGERVGALSI 267 (407)
Q Consensus 190 PtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s--K~~~~~G~r~G~~~~ 267 (407)
|||.+.+ +++|+++|++||+++|+|++|..+..-+. .. +.. ...+++.|+| |.++.+|. .|++
T Consensus 134 ~~G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~--~~-----~~~--~~d~~~~s~~~~K~l~~~g~-~g~~-- 198 (374)
T 3uwc_A 134 YTGNIAD---MPALAKIAKKHNLHIVEDACQTILGRIND--KF-----VGS--WGQFACFSLHPLKNLNVWSD-AGVI-- 198 (374)
T ss_dssp GGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETT--EE-----TTS--SSSEEEEECSSSSSSCCSSC-CEEE--
T ss_pred CcCCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCC--ee-----ccc--cccEEEEeCCCCCcCCccce-eEEE--
Confidence 9999765 78888889999999999999975432110 10 011 1246677766 99985465 6777
Q ss_pred eecChhhHHHHHHHHhhhhh--------cccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435 268 VCKTEDVASRVESQLKLVIR--------PMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR 339 (407)
Q Consensus 268 v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 339 (407)
+++++++.+.+......... ......+.+.+.+....+ +.+++..++.+++.+++.+.|++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~----------~~~~~~~~~~~~~~~~l~~~l~~~ 268 (374)
T 3uwc_A 199 ITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM----------NQLETITEKRRGIAHLYDQSFVDL 268 (374)
T ss_dssp EESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG----------GGHHHHHHHHHHHHHHHHHHTGGG
T ss_pred EeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhccC
Confidence 67776665554432211110 000111222222222111 123456667778888888888876
Q ss_pred CCCCCcccc-cCCceeEEe-----cCCCHHHHHHhHhhccEEEcCCC-------------------------------eE
Q 015435 340 GTPGDWSHI-IKQIGMFTF-----TGLNSEQVAFMTKEYHIYMTSDG-------------------------------RI 382 (407)
Q Consensus 340 ~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~l~~~gi~~~~gg-------------------------------Ri 382 (407)
+.. +.+. .+.++...| ...+.+.+.+.|.++||.+.++. ||
T Consensus 269 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl 346 (374)
T 3uwc_A 269 SEF--IDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITL 346 (374)
T ss_dssp TTT--EECCCCCTTEECCCSSEEEEETTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEE
T ss_pred CCe--EEeccCCCCCceeeEEEEEEcCCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEc
Confidence 510 1111 122222221 12256666666777899887641 56
Q ss_pred EecC-CCCCChhHHHHHHHHHHHhh
Q 015435 383 SMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 383 s~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
++.. .+++|++++++.|++++++.
T Consensus 347 ~~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 347 PAHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 5543 57899999999999999764
No 163
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.94 E-value=5.3e-26 Score=219.76 Aligned_cols=234 Identities=16% Similarity=0.136 Sum_probs=159.7
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhc-cccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN-DQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG 109 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~ 109 (407)
.++|+++.|. ++++ +.|+++.++....... .....+.|+ ..|.+ +++++++++....+. +++++ ++||
T Consensus 89 ~~~i~l~~g~--~~~~-~~~~~i~~a~~~~~~~~~~~~~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i~--~~sG 157 (464)
T 1ibj_A 89 TLLVNLDNKF--DPFD-AMSTPLYQTATFKQPSAIENGPYDYT-RSGNP-TRDALESLLAKLDKA----DRAFC--FTSG 157 (464)
T ss_dssp HHHTCCCCSS--CTTC-CSSCCCCCCSBCCCSSSSCCCSCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEEE--ESSH
T ss_pred CeEEECCCCC--CCCC-CCCccHHhhhhhhhhcccccCCcccc-CCCCH-HHHHHHHHHHHHhCC----CeEEE--ECCH
Confidence 4578888871 2356 6666666554322110 012234565 34444 455555554222221 57878 8888
Q ss_pred ccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----HhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEec
Q 015435 110 TGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185 (407)
Q Consensus 110 t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~ 185 (407)
++++.+++ ..+.+||+|++++|+|..+... ++..|.+++.++. .|++++++++. ++++++++ +
T Consensus 158 t~al~~~l---~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~-------~d~~~l~~~i~--~~tk~v~l-~ 224 (464)
T 1ibj_A 158 MAALSAVT---HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT-------TKLDEVAAAIG--PQTKLVWL-E 224 (464)
T ss_dssp HHHHHHHH---TTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT-------TSHHHHHHHCC--SSEEEEEE-C
T ss_pred HHHHHHHH---HHhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCC-------CCHHHHHHHhc--cCceEEEE-e
Confidence 99998773 4578999999999999988764 4678999988876 28899999887 56677776 9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccc-cCCCcce
Q 015435 186 CAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGL-YGERVGA 264 (407)
Q Consensus 186 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~r~G~ 264 (407)
+|+||||.+++ +++|+++|++||+++|+|++|...... . ++ . .+..++++|+||.++. .|+|+||
T Consensus 225 ~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~g~~~----~--~~----~-~~~div~~S~sK~~~g~~Gl~~G~ 290 (464)
T 1ibj_A 225 SPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLS----R--PL----E-LGADIVMHSATKFIAGHSDVMAGV 290 (464)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTC----C--GG----G-TTCSEEEEETTTTTTCSSCCCCEE
T ss_pred CCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCcccccC----C--hh----h-cCCEEEEECCcccccCCCCCcEEE
Confidence 99999999985 888999999999999999999753221 0 11 1 2568999999999875 4899999
Q ss_pred eEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435 265 LSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS 308 (407)
Q Consensus 265 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (407)
+ +++++++.+.+. ........+.+...+.++...++..
T Consensus 291 l--~~~~~~l~~~l~----~~~~~~g~~~~~~~~~a~~~al~~~ 328 (464)
T 1ibj_A 291 L--AVKGEKLAKEVY----FLQNSEGSGLAPFDCWLCLRGIKTM 328 (464)
T ss_dssp E--EECSHHHHHHHH----HHHHHTTCBCCHHHHHHHHHHHTTH
T ss_pred E--EEChHHHHHHHH----HHHHhcCCCCCHHHHHHHHhchhhH
Confidence 9 577555544443 3332233456777888877777754
No 164
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.94 E-value=1.1e-25 Score=214.08 Aligned_cols=315 Identities=14% Similarity=0.038 Sum_probs=203.2
Q ss_pred CCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCC-CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 30 SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYL-PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 30 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
-+++++++.|.| +.++.+.+++.+.+. . ..|. +..+..++++++++++ +. +++++ ++|
T Consensus 21 ~~~~~~l~~~~p------~~~~~~~~a~~~~~~--~---~~~~~~~~~~~~l~~~la~~~-~~-------~~~i~--~~~ 79 (391)
T 3dr4_A 21 MSDLPRISVAAP------RLDGNERDYVLECMD--T---TWISSVGRFIVEFEKAFADYC-GV-------KHAIA--CNN 79 (391)
T ss_dssp -------CCCCC------CCCSSHHHHHHHHHH--H---TCCSSCSHHHHHHHHHHHHHH-TC-------SEEEE--ESS
T ss_pred cCCCceeccCCC------CCCHHHHHHHHHHHH--c---CCccCCChHHHHHHHHHHHHh-CC-------CcEEE--eCC
Confidence 367888887764 334566666665554 1 2355 6778999999999998 53 47888 999
Q ss_pred cccHHHHHHHHHHh-hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCC
Q 015435 109 GTGSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACA 187 (407)
Q Consensus 109 ~t~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p 187 (407)
||+++.+++ ... +.+||+|+++.|+|..+...++..|.+++.++++ ++++.+|++++++.+. +++++++ +
T Consensus 80 gt~al~~~l--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~--~~~~~v~----~ 150 (391)
T 3dr4_A 80 GTTALHLAL--VAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDND-PRTFNLDAAKLEALIT--PRTKAIM----P 150 (391)
T ss_dssp HHHHHHHHH--HHHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCGGGSGGGCC--TTEEEEC----C
T ss_pred HHHHHHHHH--HHcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecC-ccccCcCHHHHHHhcC--CCceEEE----E
Confidence 999999984 444 6789999999999999999999999999999983 4567899999999886 4444444 4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCceeeecccccccc-CCCCCchhHHHHHHHHcCCcEEEEEecC--ccccccCCCcce
Q 015435 188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFA-SGSLDADAQSVRMFVADGGECLVAQSYA--KNMGLYGERVGA 264 (407)
Q Consensus 188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~s--K~~~~~G~r~G~ 264 (407)
+||||... ++++|+++|++||+++|+|++|+... +.+. . ..... .+.+.||| |.++ |.+.|+
T Consensus 151 ~n~tG~~~---~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~--~------~~~~~--di~~~S~s~~K~l~--~g~gg~ 215 (391)
T 3dr4_A 151 VHLYGQIC---DMDPILEVARRHNLLVIEDAAEAVGATYRGK--K------SGSLG--DCATFSFFGNAIIT--TGEGGM 215 (391)
T ss_dssp BCGGGCCC---CHHHHHHHHHHTTCEEEEECTTCTTCEETTE--E------TTSSS--SEEEEECBTTSSSC--CBSCEE
T ss_pred ECCCCChh---hHHHHHHHHHHcCCEEEEECcccccceECCe--e------ecccC--CEEEEECCCCCcCC--cCCeEE
Confidence 68999965 47888888999999999999987533 2211 0 00111 26677766 6664 456788
Q ss_pred eEEeecChhhHHHHHHHHhhhhh----cc----cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015435 265 LSIVCKTEDVASRVESQLKLVIR----PM----YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDAL 336 (407)
Q Consensus 265 ~~~v~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 336 (407)
+ +++++++.+.+......... .. ..+.....+.++...... +.+++..++.+++++++.+.|
T Consensus 216 ~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~--------~~~~~~~~~~~~~~~~l~~~L 285 (391)
T 3dr4_A 216 I--TTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQL--------ERVDEHLAARERVVGWYEQKL 285 (391)
T ss_dssp E--EESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHH--------HTHHHHHHHHHHHHHHHHHHH
T ss_pred E--EECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHh
Confidence 8 67776665554432211110 00 001111222222222211 224556677778888899999
Q ss_pred HhcCCCCCcccccC------Ccee--EEe-c----CCCHHHHHHhHhhccEEEcCCC-----------------------
Q 015435 337 SARGTPGDWSHIIK------QIGM--FTF-T----GLNSEQVAFMTKEYHIYMTSDG----------------------- 380 (407)
Q Consensus 337 ~~~~~~~~~~~~~~------~~~~--~~~-~----~~~~~~~~~~l~~~gi~~~~gg----------------------- 380 (407)
++.+ +.+..+ ..++ +.+ + +.+.+.+.+.|.++||.+.++.
T Consensus 286 ~~~g----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~ 361 (391)
T 3dr4_A 286 ARLG----NRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEAC 361 (391)
T ss_dssp GGGT----TSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHH
T ss_pred hcCC----ccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHH
Confidence 8875 333322 1221 221 1 2356667766777899887651
Q ss_pred -----eEEecC-CCCCChhHHHHHHHHHH
Q 015435 381 -----RISMAG-LSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 381 -----Ris~~~-~~~e~i~~~~~~l~~~l 403 (407)
||++.. .+++|++++++.|++++
T Consensus 362 ~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 362 GVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp HHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred HhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 565543 57899999999998754
No 165
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.94 E-value=1.5e-25 Score=210.46 Aligned_cols=310 Identities=11% Similarity=0.052 Sum_probs=199.1
Q ss_pred cccchhHHHHHHHHhcccc-ccccCCCC--CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhc
Q 015435 48 PLVLNVVRKAEQLLVNDQS-RVKEYLPI--VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY 124 (407)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-~~~~y~~~--~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~ 124 (407)
+.|+.+++++.+.+. +.. ....+.+. .-..++++.+++++ +.. +++++++ |+|+++++.+++ .....
T Consensus 14 ~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~~----~~~~v~~--~~g~t~al~~~~--~~l~~ 83 (362)
T 3ffr_A 14 ELYPTVRQHMITALD-EKIGVISHRSKKFEEVYKTASDNLKTLL-ELP----SNYEVLF--LASATEIWERII--QNCVE 83 (362)
T ss_dssp CCCTTHHHHHHHHHH-TTTTTSCTTSHHHHHHHHHHHHHHHHHT-TCC----TTEEEEE--ESCHHHHHHHHH--HHHCS
T ss_pred CCCHHHHHHHHHHhc-CCccCcCCCCHHHHHHHHHHHHHHHHHh-CCC----CCcEEEE--eCCchHHHHHHH--HhccC
Confidence 456677777777775 221 01112121 12445566666665 321 2478999 999999999994 33355
Q ss_pred CCCeEEecCCCCC-ChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHH
Q 015435 125 HQLTIYIPQPTWG-NHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQI 203 (407)
Q Consensus 125 ~gd~Vi~~~p~y~-~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i 203 (407)
+ +.+++..+.|. .+...++..|++++.++. +.++.+|+++++ +. ++++++++ ++|+||||.+++ +++|
T Consensus 84 ~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~--~~--~~~~~v~~-~~~~nptG~~~~---l~~i 152 (362)
T 3ffr_A 84 K-KSFHCVNGSFSKRFYEFAGELGREAYKEEA--AFGKGFYPADIT--VP--ADAEIICL-THNETSSGVSMP---VEDI 152 (362)
T ss_dssp S-EEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCGGGCC--CC--TTCCEEEE-ESEETTTTEECC---HHHH
T ss_pred C-cEEEEcCcHHHHHHHHHHHHhCCCeEEEec--CCCCCCCHHHHh--cc--CCccEEEE-EcCCCCcceeCC---HHHH
Confidence 5 44445555555 233466788999999998 445789999998 43 66788777 799999999987 7778
Q ss_pred HHHHHHc-CceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccc-ccCCCcceeEEeecChhhHHHHHHH
Q 015435 204 RQLMRSK-GLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMG-LYGERVGALSIVCKTEDVASRVESQ 281 (407)
Q Consensus 204 ~~~~~~~-~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~v~~~~~~~~~~~~~ 281 (407)
+++|++| |+++|+|++|..+... . + .....+++.|+||.++ ++| +|++ +++ +++.+++...
T Consensus 153 ~~la~~~p~~~li~D~a~~~~~~~-~--~---------~~~~d~~~~s~~K~~~~~~G--~g~~--~~~-~~~~~~~~~~ 215 (362)
T 3ffr_A 153 NTFRDKNKDALIFVDAVSSLPYPK-F--D---------WTKIDSVFFSVQKCFGLPAG--LGVW--ILN-DRVIEKSKAL 215 (362)
T ss_dssp TTSGGGSTTSEEEEECTTTTTSSC-C--C---------TTSCSEEEEETTSTTCCCSC--CEEE--EEE-HHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEecccccCCcc-c--C---------hhHCcEEEEecccccCCCCc--eEEE--EEC-HHHHHHhhhc
Confidence 8889999 9999999998755432 1 1 0114588899999998 677 4666 344 4444443332
Q ss_pred Hh----------------hhh-hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015435 282 LK----------------LVI-RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGD 344 (407)
Q Consensus 282 ~~----------------~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 344 (407)
.. ... .....+++..++.++..+++... ...+++.+++++++++++.+.|++.+.
T Consensus 216 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g--- 287 (362)
T 3ffr_A 216 LAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDML-----QISADGIRKQTEEKAALINTYIESSKV--- 287 (362)
T ss_dssp HHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHCSS---
T ss_pred cccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHHHHHHHHHHHccC---
Confidence 11 000 01133566666666655554211 122577888899999999999998832
Q ss_pred cccccC----CceeEEecCC--CHHHHHHhHhhccEEEcCC------C--eEEecC-CCCCChhHHHHHHHHHH
Q 015435 345 WSHIIK----QIGMFTFTGL--NSEQVAFMTKEYHIYMTSD------G--RISMAG-LSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 345 ~~~~~~----~~~~~~~~~~--~~~~~~~~l~~~gi~~~~g------g--Ris~~~-~~~e~i~~~~~~l~~~l 403 (407)
+.+..+ ..+.+.|+.+ +.+.+.+.|.++||.+.+| + ||+++. .+++++++++++|++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 288 FSFGVEDAKLRSMTTIVANTTMLPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp EEESSSCGGGBCSSEEEEEESSCHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceeccCChhhcCCceEEEecCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 554431 2233333322 5555555555579999875 2 999864 46788999999998764
No 166
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.93 E-value=6.4e-26 Score=212.94 Aligned_cols=287 Identities=14% Similarity=0.057 Sum_probs=183.9
Q ss_pred cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCC--eEEecCCCCCChHH---H
Q 015435 68 VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQL--TIYIPQPTWGNHPK---V 142 (407)
Q Consensus 68 ~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd--~Vi~~~p~y~~~~~---~ 142 (407)
...|++..+..++++++++++ +. +..++ ++||++++.+++ ...+.+|| .|+++.++|..... .
T Consensus 40 ~~~y~~~~~~~~l~~~la~~~-~~-------~~~i~--~~~G~~a~~~al--~~~~~~gd~~~vi~~~~~~~~~~~~~~~ 107 (357)
T 3lws_A 40 SDQYGTGAIIEPFEQKFADVL-GM-------DDAVF--FPSGTMAQQVAL--RIWSDETDNRTVAYHPLCHLEIHEQDGL 107 (357)
T ss_dssp CEETTEETTHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHH--HHHHHHHTCCEEEECTTCHHHHSSTTHH
T ss_pred cccccCChHHHHHHHHHHHHh-CC-------CcEEE--ecCcHHHHHHHH--HHHhhcCCCcEEEecccceeeeeccchh
Confidence 345776778999999999988 53 34566 778888998874 33456777 67776665443322 3
Q ss_pred HhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHHcCceeeeccccc
Q 015435 143 FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPT-GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ 221 (407)
Q Consensus 143 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~D~~y~ 221 (407)
....|.+++.++. +++.+|+++++++ ++++++++ ++||||| |.+++.+++++|+++|++||++||+|++|.
T Consensus 108 ~~~~g~~~~~v~~---~~~~~d~~~l~~~----~~~~~v~~-~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~ 179 (357)
T 3lws_A 108 KELHPIETILVGA---ADRLMTLDEIKAL----PDIACLLL-ELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARL 179 (357)
T ss_dssp HHHSSCEEEECSC---TTSCCCHHHHHTC----CSCSEEEE-ESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTH
T ss_pred hhccCcEEEEecC---CCCCcCHHHHhcC----cCcceEEE-EcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchh
Confidence 4566888888864 3457999999876 23677766 8999998 999999999999999999999999999975
Q ss_pred cc--cCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCC--ChhH
Q 015435 222 GF--ASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSP--PIHG 297 (407)
Q Consensus 222 ~~--~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 297 (407)
.. ...+. +...+....+ +++.|+||.++.++ .||+ +.++++.+.+ .........+. ....
T Consensus 180 ~~~~~~~~~-----~~~~~~~~~d--~~~~s~sK~~~~~~--gg~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 243 (357)
T 3lws_A 180 FEMLPYYEK-----TAAEIAGLFD--SIYISFYKGLGGIA--GAIL---AGPAAFCQTA----RIWKRRYGGDLISLYPY 243 (357)
T ss_dssp HHHHHHHTC-----CHHHHHTTSS--EEEEESSSTTCCSS--CEEE---EECHHHHHHH----HHHHHHTTCCCSCCHHH
T ss_pred hhhhhhcCC-----ChHHHHhcCC--EEEEeccccCCCCc--eEEE---EcCHHHHHHH----HHHHHHhcCCcccchHH
Confidence 21 11111 1112222222 44789999994332 2777 4455544443 33322222122 2222
Q ss_pred HHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-ccCCceeEEecCC--C----HHHHHHhHh
Q 015435 298 ASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSH-IIKQIGMFTFTGL--N----SEQVAFMTK 370 (407)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~--~----~~~~~~~l~ 370 (407)
+.++...++ +..+. .+++.++++++.+.|++++. +.+ ..+..++|.|+.+ . .+.+.+.|.
T Consensus 244 ~~~~~~~l~---------~~~~~-~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 310 (357)
T 3lws_A 244 IVSADYYYE---------LRKDR-MGQYYEQAKQLAEQFNALPG---VHTTPEVPVSNMFHLHFDGQAADISPKLEQVQE 310 (357)
T ss_dssp HHHHHHHHH---------HHTTC-HHHHHHHHHHHHHHHHTSTT---EEEESSSCSSSEEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------HHHHH-HHHHHHHHHHHHHHHHhCCC---CeeccCCCcceEEEEEecCChHHHHHHHHHHHH
Confidence 333333332 11222 23356778899999988732 665 3455666777744 2 345666777
Q ss_pred hccEEEcCCC---------eEEecC----CCCCChhHHHHHHHHHH
Q 015435 371 EYHIYMTSDG---------RISMAG----LSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 371 ~~gi~~~~gg---------Ris~~~----~~~e~i~~~~~~l~~~l 403 (407)
++||.+.|+. |++++. .+++++++++++|.+++
T Consensus 311 ~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 311 ETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp HHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred hcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 7999999862 777652 25567788888877654
No 167
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.93 E-value=1.2e-24 Score=208.77 Aligned_cols=310 Identities=17% Similarity=0.065 Sum_probs=203.6
Q ss_pred cccchhHHHHHHHHhccccccccCCCCCC----cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-
Q 015435 48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVG----LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR- 122 (407)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g----~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~- 122 (407)
+.++.+.+++.+.+. ......|++..| ..++++.+++++ +. +++++ ++|||+++.+++ ...
T Consensus 13 ~~~~~~~~a~~~~~~--~~~~~~~~~~~g~~~l~~~l~~~la~~~-g~-------~~~i~--~~~gt~al~~~~--~~~~ 78 (418)
T 2c81_A 13 QHSDRTRRKIEEVFQ--SNRWAISGYWTGEESMERKFAKAFADFN-GV-------PYCVP--TTSGSTALMLAL--EALG 78 (418)
T ss_dssp CCCHHHHHHHHHHHH--HTCCSTTSBCCSSCCHHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHH--HHTT
T ss_pred CCCHHHHHHHHHHHh--cCCccccCcccCCHHHHHHHHHHHHHHh-CC-------CcEEE--eCCHHHHHHHHH--HHcC
Confidence 345666777666665 222334766666 677788888877 43 35677 888899999984 444
Q ss_pred hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHH
Q 015435 123 HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQ 202 (407)
Q Consensus 123 ~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~ 202 (407)
+.+||+|+++.|+|..+...++..|.+++.++++ +.++.+|++++++.+. ++++++++ +||||.. .++++
T Consensus 79 ~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~--~~~~~v~~----~~~~G~~---~~~~~ 148 (418)
T 2c81_A 79 IGEGDEVIVPSLTWIATATAVLNVNALPVFVDVE-ADTYCIDPQLIKSAIT--DKTKAIIP----VHLFGSM---ANMDE 148 (418)
T ss_dssp CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHGGGCC--TTEEEECC----BCCTTCC---CCHHH
T ss_pred CCCcCEEEECCCccHhHHHHHHHcCCEEEEEecC-CCCCCcCHHHHHHhhC--CCCeEEEE----eCCcCCc---ccHHH
Confidence 5789999999999999999999999999999983 4467899999999886 44555544 4699985 46888
Q ss_pred HHHHHHHcCceeeecccccccc-CCCCCchhHHHHHHHHcCCcEEEEEec--CccccccCCCcceeEEeecChhhHHHHH
Q 015435 203 IRQLMRSKGLLPFFDSAYQGFA-SGSLDADAQSVRMFVADGGECLVAQSY--AKNMGLYGERVGALSIVCKTEDVASRVE 279 (407)
Q Consensus 203 i~~~~~~~~~~li~D~~y~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~--sK~~~~~G~r~G~~~~v~~~~~~~~~~~ 279 (407)
|+++|++||+++|+|++|+.+. +++. . +.... .+.+.|| ||.++. | |+||+ +++++++.+++.
T Consensus 149 i~~~~~~~~~~li~D~a~~~~~~~~~~--~------~~~~~--~~~~~s~s~~K~~~~-g-~~g~~--~~~~~~l~~~~~ 214 (418)
T 2c81_A 149 INEIAQEHNLFVIEDCAQSHGSVWNNQ--R------AGTIG--DIGAFSCQQGKVLTA-G-EGGII--VTKNPRLFELIQ 214 (418)
T ss_dssp HHHHHHHTTCEEEEECTTCTTCEETTE--E------TTSSS--SEEEEECCTTSSSCS-S-SCEEE--EESCHHHHHHHH
T ss_pred HHHHHHHCCCEEEEECcccccCccCCE--e------ccccc--ceEEEeccCCcccCC-C-CeEEE--EECCHHHHHHHH
Confidence 8999999999999999998876 4321 1 11111 2667777 999996 8 99998 676677666554
Q ss_pred HHHhhhhhc---------ccCC----CChh-------HHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435 280 SQLKLVIRP---------MYSS----PPIH-------GASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR 339 (407)
Q Consensus 280 ~~~~~~~~~---------~~~~----~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 339 (407)
......... .+.. +..+ ...++.. +... +.+++..++.+++++++.+.|+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~-~~~l-------~~~~~~~~~~~~~~~~l~~~L~~~ 286 (418)
T 2c81_A 215 QLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAIL-LDQL-------QELDDKNAIREKNAMFLNDALSKI 286 (418)
T ss_dssp HHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHH-HHHH-------TTHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHH-HHHH-------HHHHHHHHHHHHHHHHHHHHhccC
Confidence 422211100 0000 0110 0111111 1000 124456666777888999999876
Q ss_pred CCCCCcccc-cCCc-eeE---E----ec-----CCCHHHHHHhHhhc-cEE---EcCC----------------------
Q 015435 340 GTPGDWSHI-IKQI-GMF---T----FT-----GLNSEQVAFMTKEY-HIY---MTSD---------------------- 379 (407)
Q Consensus 340 ~~~~~~~~~-~~~~-~~~---~----~~-----~~~~~~~~~~l~~~-gi~---~~~g---------------------- 379 (407)
+. +.+. .+.+ +.. . +. +.+.+.+.+.|.++ ||. +.++
T Consensus 287 ~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~ 363 (418)
T 2c81_A 287 DG---IKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSV 363 (418)
T ss_dssp TT---EEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHH
T ss_pred CC---cccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccc
Confidence 32 5554 3444 221 1 11 24566665555555 998 6532
Q ss_pred --------------------C--eEEecC-C-CCCChhHHHHHHHHHHHhh
Q 015435 380 --------------------G--RISMAG-L-SSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 380 --------------------g--Ris~~~-~-~~e~i~~~~~~l~~~l~~~ 406 (407)
+ ||++.. . +++|++++++.|+++++++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 364 RKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp HCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred cccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 1 777753 5 7899999999999998765
No 168
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.93 E-value=6.8e-25 Score=210.21 Aligned_cols=325 Identities=13% Similarity=0.100 Sum_probs=205.9
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccc--c-cCC--CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRV--K-EYL--PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ 105 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~y~--~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~ 105 (407)
++.+.|..+. .+ +.|+.+.+++.+.+.+..... . .|. ......++++.+++++ +. ++++|++
T Consensus 27 ~~~~yld~~~----~~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~-----~~~~v~~-- 93 (416)
T 1qz9_A 27 EGVIYLDGNS----LG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI-GA-----RDGEVVV-- 93 (416)
T ss_dssp TTCEECCTTT----SC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT-TC-----CTTSEEE--
T ss_pred CCeEeecCCC----cC-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHc-CC-----CcccEEE--
Confidence 3456666554 24 567777777777775110000 0 111 1234567888888876 42 3478999
Q ss_pred cCCcccHHHHHHHHHHhh----cCCCeEEec-CCCCCChHHHHh----hc--CceeeEEEeecCCCCCcChhhHHHHHHc
Q 015435 106 CLSGTGSLRVGAEFLARH----YHQLTIYIP-QPTWGNHPKVFT----LA--GLSVKTYRYYDPATRGLNFQGLLEDLRA 174 (407)
Q Consensus 106 t~g~t~a~~~~~~~~~~~----~~gd~Vi~~-~p~y~~~~~~~~----~~--G~~~~~v~~~~~~~~~~d~~~l~~~i~~ 174 (407)
|+|+++++.+++..+..+ .+||+|++. .++|+.+...+. .. |.+++.++. ++++++.+.
T Consensus 94 ~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~- 163 (416)
T 1qz9_A 94 TDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAID- 163 (416)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCS-
T ss_pred eCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhC-
Confidence 999999998775443223 789975544 557775554432 23 888888754 688888886
Q ss_pred CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcc
Q 015435 175 APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKN 254 (407)
Q Consensus 175 ~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 254 (407)
++++++++ ++|+||||.+.+ +++|+++|++||+++|+|++|.... ... + +..+ +..+++.|++|.
T Consensus 164 -~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~-~~~--~---~~~~----~~d~~~~s~~K~ 228 (416)
T 1qz9_A 164 -QDTAVVML-THVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGA-VPV--D---LHQA----GADYAIGCTYKY 228 (416)
T ss_dssp -TTEEEEEE-ESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTT-SCC--C---HHHH----TCSEEEECSSST
T ss_pred -CCceEEEE-eccccCcccccC---HHHHHHHHHHcCCEEEEEccccccC-cCC--C---hhhc----CCCEEEecCccc
Confidence 45566555 999999999887 7888888999999999999986322 111 1 2111 245888999999
Q ss_pred ccccCCCc-ceeEEeecChhhHHHHHHHHhh-------------------hhhcccCCCChhHHHHHHHHhcChhhHHhH
Q 015435 255 MGLYGERV-GALSIVCKTEDVASRVESQLKL-------------------VIRPMYSSPPIHGASIVATILKDSTMYKEW 314 (407)
Q Consensus 255 ~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (407)
++ +|.++ |++ +++ +++.+.+...... .......+++..++.++..+++...
T Consensus 229 l~-~g~~~~g~l--~~~-~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----- 299 (416)
T 1qz9_A 229 LN-GGPGSQAFV--WVS-PQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFA----- 299 (416)
T ss_dssp TC-CCTTCCCEE--EEC-TTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHT-----
T ss_pred CC-CCCCCeEEE--EEC-HHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHH-----
Confidence 75 67888 998 455 3333322211000 0011122455655655555554211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCcccccCC----ceeEEecCC-CHHHHHHhHhhccEEEcCC--C--e
Q 015435 315 TLELKAMADRIISMRQQLFDALSAR----GTPGDWSHIIKQ----IGMFTFTGL-NSEQVAFMTKEYHIYMTSD--G--R 381 (407)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~l~~~gi~~~~g--g--R 381 (407)
...+++.+++++++++++.+.|++. + +.+..+. .+.+.++.+ +.+.+.+.|.++||.+... + |
T Consensus 300 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~~~~~~lR 375 (416)
T 1qz9_A 300 QTDMASLRRKSLALTDLFIELVEQRCAAHE----LTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYREPRIMR 375 (416)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHTTSC----CEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECEEETTTEEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHhhccCCC----eEEeCCCCHHHcCCEEEEecCCHHHHHHHHHhCCcEeccCCCCeEE
Confidence 0235677788889999999999876 4 5554442 233455544 3445555556689988653 2 9
Q ss_pred EEec--CCCCCChhHHHHHHHHHHHhh
Q 015435 382 ISMA--GLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 382 is~~--~~~~e~i~~~~~~l~~~l~~~ 406 (407)
|+++ ..+++++++++++|++++++.
T Consensus 376 is~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 376 FGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp EECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 9986 358899999999999998753
No 169
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.93 E-value=2.2e-24 Score=204.80 Aligned_cols=276 Identities=15% Similarity=0.156 Sum_probs=191.7
Q ss_pred CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----HhhcCce
Q 015435 74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----FTLAGLS 149 (407)
Q Consensus 74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----~~~~G~~ 149 (407)
.....++++.+++++ +. ++.++ ++||++++.+++ ...+.+||+|+++.|+|.++... ++..|.+
T Consensus 58 ~~~~~~l~~~la~~~-g~-------~~~i~--~~sG~~ai~~~~--~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~ 125 (389)
T 3acz_A 58 NPTVEQFEEMVCSIE-GA-------AGSAA--FGSGMGAISSST--LAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIE 125 (389)
T ss_dssp CHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHHH--TTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHHh-CC-------CeEEE--eCCHHHHHHHHH--HHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCE
Confidence 456778999999988 43 35667 778889999884 33467999999999999987665 4678999
Q ss_pred eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435 150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD 229 (407)
Q Consensus 150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~ 229 (407)
++.++. .|++++++.+. ++++++++ ++|+||||.+.+ +++|+++|++||+++|+|++|..+....
T Consensus 126 ~~~v~~-------~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~~-- 190 (389)
T 3acz_A 126 VDLIDT-------SDVEKVKAAWK--PNTKMVYL-ESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFLK-- 190 (389)
T ss_dssp EEEECT-------TCHHHHHHTCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC--
T ss_pred EEEECC-------CCHHHHHHhcC--CCCeEEEE-ECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccccC--
Confidence 998865 38899999887 55677666 899999999886 7888888999999999999998766421
Q ss_pred chhHHHHHHHHcCCcEEEEEecCccccccCCCc-ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435 230 ADAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS 308 (407)
Q Consensus 230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (407)
. + . ....++++|+||.++.+|.|+ ||+ +++++++.+.+. ........+.+...+.++...++..
T Consensus 191 --~--~----~-~~~di~~~S~sK~~~~~~~~~~G~v--~~~~~~~~~~l~----~~~~~~g~~~~~~~~~~~~~~l~~l 255 (389)
T 3acz_A 191 --P--L----E-LGADIALHSVSKYINGHGDVIGGVS--SAKTAEDIATIK----FYRKDAGSLMAPMDAFLCARGMKTL 255 (389)
T ss_dssp --G--G----G-TTCSEEEEETTTTTTCSSCCCCEEE--EESSHHHHHHHH----HHHHHHCCCCCHHHHHHHHHHHTTH
T ss_pred --c--c----c-cCCeEEEECChhhccCCCCceeEEE--EECcHHHHHHHH----HHHHhcCCCCCHHHHHHHHcCccHH
Confidence 1 1 1 246789999999999999998 888 566435444443 3333233355666666666666543
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Cccccc----CCceeEEecCC-CHHHHHHhHhhc
Q 015435 309 TMYKEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWSHII----KQIGMFTFTGL-NSEQVAFMTKEY 372 (407)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~~~----~~~~~~~~~~~-~~~~~~~~l~~~ 372 (407)
....++..++.+.+.+.+++.+. +. .+.+.. ..++++.+. + ..+.+..++++.
T Consensus 256 ----------~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~-l~~~~~~~~~l~~~ 324 (389)
T 3acz_A 256 ----------PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFE-MKSFEAAKKLMEHL 324 (389)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE-ESSHHHHHHHHTTC
T ss_pred ----------HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEE-ECCHHHHHHHHHhC
Confidence 22233444556666666665421 00 012111 225555543 2 256677888878
Q ss_pred cEEEcC---C-----------------------------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435 373 HIYMTS---D-----------------------------G--RISMAGLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 373 gi~~~~---g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 405 (407)
|+.+.+ | + |||++. ++.+.+++.|.++++.
T Consensus 325 ~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---~~~~~li~~l~~al~~ 388 (389)
T 3acz_A 325 KVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI---ENVDDIIADLKQALEL 388 (389)
T ss_dssp SSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHTC
T ss_pred CCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 876644 2 2 777664 6899999999998864
No 170
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.93 E-value=6.2e-25 Score=213.86 Aligned_cols=325 Identities=15% Similarity=0.143 Sum_probs=212.0
Q ss_pred CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCC---CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLP---IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
..+.|+ |.. . +..+.+++++...+. ..+.|.+ ..|..++++++++++....+.. ..+++ |+|
T Consensus 67 ~~~~lg-~~~----~-~~~p~v~~~~~~~~~----~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~---~~~~~--~~g 131 (474)
T 1wyu_B 67 TFYPLG-SCT----M-KYNPKLHEEAARLFA----DLHPYQDPRTAQGALRLMWELGEYLKALTGMD---AITLE--PAA 131 (474)
T ss_dssp SCCCBT-TTC----C-CCCCHHHHHHHHTTS----SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCS---EEECC--CSS
T ss_pred Cccccc-ccc----c-cCCHHHHHHHHHHHH----hcCCCCchhhChHHHHHHHHHHHHHHHHHCCC---ceeec--ChH
Confidence 456666 432 2 334456655554432 2334543 4565666666666653322221 23556 899
Q ss_pred cccHHHHHHHHHHh--hcCCC-----eEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEE
Q 015435 109 GTGSLRVGAEFLAR--HYHQL-----TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIV 181 (407)
Q Consensus 109 ~t~a~~~~~~~~~~--~~~gd-----~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v 181 (407)
|++++..++..+.. ..+|| +|+++.|+|+.+...+...|++++.++.+ .++.+|++++++++. ++++++
T Consensus 132 gt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~--~~~~~d~~~L~~~i~--~~t~~v 207 (474)
T 1wyu_B 132 GAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSG--PEGEVDLEALKRELG--PHVAAL 207 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBC--TTSSBCHHHHHHHCS--TTEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCC--CCCCcCHHHHHHhhC--CCceEE
Confidence 99999886433322 34787 99999999999999999999999999983 357799999999997 556776
Q ss_pred EEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccccc-C-
Q 015435 182 LLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLY-G- 259 (407)
Q Consensus 182 ~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G- 259 (407)
++ ++| ||||.+. +++++|+++|++||+++|+|++|..+..+.. . ...+ ...+++.|++|.++.| |
T Consensus 208 ~~-~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~--~---~~~~----g~di~~~s~~K~~~~p~g~ 274 (474)
T 1wyu_B 208 ML-TNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMGWA--R---PGDM----GFDVVHLNLHKTFTVPHGG 274 (474)
T ss_dssp EE-CSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTTTC--C---HHHH----TCSEEECCTTTTTCCCCTT
T ss_pred EE-ECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhccCC--C---cccC----CCcEEEEeCccccccCCCC
Confidence 66 677 6899873 4799999999999999999999976654311 1 1111 3467788999999766 4
Q ss_pred --CCcceeEEeecChhhHHHHHHHHhh-h------------------hhcccCCCChhHHHHHHHHhcChhhHHhHHHHH
Q 015435 260 --ERVGALSIVCKTEDVASRVESQLKL-V------------------IRPMYSSPPIHGASIVATILKDSTMYKEWTLEL 318 (407)
Q Consensus 260 --~r~G~~~~v~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 318 (407)
.|+||+ +++ +++ .+.+.. . .+....+.+..++.++..++.... .+.+
T Consensus 275 gG~~~G~~--~~~-~~l----~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g-----~~~l 342 (474)
T 1wyu_B 275 GGPGSGPV--GVK-AHL----APYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG-----LEGL 342 (474)
T ss_dssp SCCCCCCE--EEC-GGG----GGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH-----HHHH
T ss_pred CCCCeEEE--EEc-HHH----HHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHH-----HHHH
Confidence 599999 566 332 232320 0 001112345566666666665321 1456
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeE-Eec----CCCHHHHHHhHhhccEEEcC-------CC--eEEe
Q 015435 319 KAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMF-TFT----GLNSEQVAFMTKEYHIYMTS-------DG--RISM 384 (407)
Q Consensus 319 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~l~~~gi~~~~-------gg--Ris~ 384 (407)
++..+++.++++++.+.|++.+ +.+..+...+. .|+ +.+.+.+.+.|.++||.+.. .+ ||++
T Consensus 343 ~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~ 418 (474)
T 1wyu_B 343 KKAAALAVLNARYLKELLKEKG----YRVPYDGPSMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEP 418 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT----CBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECC
T ss_pred HHHHHHHHHHHHHHHHHHhhcC----cEecCCCCcceEEEEEcCCCCCHHHHHHHHHHCCccccccccccccCCEEEEEe
Confidence 7778889999999999999875 44422222220 222 34555555444456987521 12 8888
Q ss_pred cC-CCCCChhHHHHHHHHHHH
Q 015435 385 AG-LSSKTVPHLTDAIHAAVT 404 (407)
Q Consensus 385 ~~-~~~e~i~~~~~~l~~~l~ 404 (407)
.. .+++++++++++|+++++
T Consensus 419 ~~~~t~e~id~~~~~L~~~~~ 439 (474)
T 1wyu_B 419 TETEAKETLEAFAEAMGALLK 439 (474)
T ss_dssp CTTSCHHHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHHHHHHHHH
Confidence 74 367899999999998864
No 171
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.93 E-value=9.3e-25 Score=212.56 Aligned_cols=337 Identities=12% Similarity=0.069 Sum_probs=200.6
Q ss_pred CCCeeeeeeeee-ecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 30 SPVKLNLGVGAY-RTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 30 ~~~~i~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
+...++++.|.+ .|-.....++.+.+++.+.+. .. ...|.+..+..++++++++++ +. +++++ |+|
T Consensus 31 g~~~~~~~~~~~ylD~~~~~~~~~v~~a~~~~l~--~~-~~~y~~~~~~~~l~~~la~~~-~~-------~~v~~--t~~ 97 (467)
T 2oqx_A 31 GMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMM--RG-DEAYSGSRSYYALAESVKNIF-GY-------QYTIP--THQ 97 (467)
T ss_dssp TSCGGGSCGGGCSEECSCCSSCSCCCHHHHHHTT--SC-CCCSSSCHHHHHHHHHHHHHH-CC-------SEEEE--EC-
T ss_pred CCCceeccCCCeeEecccCCCcHHHHHHHHHHhc--cC-cceeccCchhHHHHHHHHHHh-Cc-------CcEEE--cCC
Confidence 445566665531 111110112556666666654 22 245877788999999999998 53 68999 999
Q ss_pred cccHHHHHHHHHHhhcC-----C----CeEEecCCCCCChHHHHhhcCceeeEEEee--------cCCCCCcChhhHHHH
Q 015435 109 GTGSLRVGAEFLARHYH-----Q----LTIYIPQPTWGNHPKVFTLAGLSVKTYRYY--------DPATRGLNFQGLLED 171 (407)
Q Consensus 109 ~t~a~~~~~~~~~~~~~-----g----d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~--------~~~~~~~d~~~l~~~ 171 (407)
||+|+.++++.+ ..+ | |+|++..+.|..+.......|..+...... .+.++.+|+++|+++
T Consensus 98 gt~A~~~al~~~--~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~ 175 (467)
T 2oqx_A 98 GRGAEQIYIPVL--IKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERG 175 (467)
T ss_dssp -CCSHHHHHHHH--HHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHH
T ss_pred cHHHHHHHHHHH--hccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHH
Confidence 999999996554 455 7 888877444444455555666665543211 012346899999999
Q ss_pred HHcC--CCCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHHcCceeeecccccc----------ccCCCCCchhHHHHH-
Q 015435 172 LRAA--PSGAIVLLHACAHNPT-GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQG----------FASGSLDADAQSVRM- 237 (407)
Q Consensus 172 i~~~--~~~~~v~i~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~D~~y~~----------~~~~~~~~~~~~~~~- 237 (407)
+.+. ++++++++ ++|+||| |.+++.+++++|+++|++||++||+|+++.. ..+.+. ....+..
T Consensus 176 i~~~~~~~~~~vi~-~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~--~~~~~~~~ 252 (467)
T 2oqx_A 176 IEEVGPNNVPYIVA-TITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW--TIEQITRE 252 (467)
T ss_dssp HHHHCGGGCCCEEE-ESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTS--CHHHHHHH
T ss_pred HHhcCCCceeEEEE-eccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCc--cHHHHhhh
Confidence 9742 24677776 7899998 9999999999999999999999999965432 123222 1111110
Q ss_pred HHHcCCcEEEEEecCcccccc-CCCcceeEEeecCh---hhHHHHHHHHhhhhhcccCC-CChhHHHHHHHHhcChhhHH
Q 015435 238 FVADGGECLVAQSYAKNMGLY-GERVGALSIVCKTE---DVASRVESQLKLVIRPMYSS-PPIHGASIVATILKDSTMYK 312 (407)
Q Consensus 238 ~~~~~~~~i~~~s~sK~~~~~-G~r~G~~~~v~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 312 (407)
.....+ +++.|+||.++++ | ||+ +++++ +....+.............+ .+..++.++...++
T Consensus 253 ~~~~~d--~~~~s~sK~~g~~~G---g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~------ 319 (467)
T 2oqx_A 253 TYKYAD--MLAMSAKKDAMVPMG---GLL--CMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY------ 319 (467)
T ss_dssp HGGGCS--EEEEESSSTTCCSSC---EEE--EECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH------
T ss_pred hhccCC--eEEEecccccCCCCc---eEE--EecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhH------
Confidence 002223 4578999999865 3 566 45544 22232222110110000111 12212211111111
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEecCC-------C-----HHH-HHHhHhhccEEEcC
Q 015435 313 EWTLEL-KAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGL-------N-----SEQ-VAFMTKEYHIYMTS 378 (407)
Q Consensus 313 ~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~-~~~~l~~~gi~~~~ 378 (407)
+.+ +...++..++++++.+.|++.+ +.+. +.++++.|+.+ + .+. ...++.++||.+.|
T Consensus 320 ---~~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~ 391 (467)
T 2oqx_A 320 ---DGMNLDWLAYRIAQVQYLVDGLEEIG----VVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVE 391 (467)
T ss_dssp ---HTTCHHHHHHHHHHHHHHHHHHHHTT----CCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEE
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHCC----Ceee-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecc
Confidence 111 1223445677888899998875 5555 56666666543 2 122 34443778999875
Q ss_pred -C------------------C--eEEecC--CCCCChhHHHHHHHHHHHh
Q 015435 379 -D------------------G--RISMAG--LSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 379 -g------------------g--Ris~~~--~~~e~i~~~~~~l~~~l~~ 405 (407)
+ + ||+++. .+++++++++++|++++++
T Consensus 392 ~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 392 IGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp ESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 2 3 888773 3789999999999998864
No 172
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.93 E-value=2.9e-25 Score=209.35 Aligned_cols=284 Identities=16% Similarity=0.153 Sum_probs=193.5
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-hcCCCeEEecCCCCCChHHHHhhcCc
Q 015435 70 EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR-HYHQLTIYIPQPTWGNHPKVFTLAGL 148 (407)
Q Consensus 70 ~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~-~~~gd~Vi~~~p~y~~~~~~~~~~G~ 148 (407)
.|.+..+..++++.+++++ +. +++++ |+|||+|+.+++ ... +.+||+|+++.++|..+...++..|.
T Consensus 30 ~~~~~~~~~~l~~~la~~~-~~-------~~~~~--~~sGt~al~~al--~~~~~~~gd~Vi~~~~~~~~~~~~~~~~G~ 97 (367)
T 3nyt_A 30 QYILGPEVTELEDRLADFV-GA-------KYCIS--CANGTDALQIVQ--MALGVGPGDEVITPGFTYVATAETVALLGA 97 (367)
T ss_dssp CCSSCHHHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHH--HHTTCCTTCEEEEESSSCTHHHHHHHHTTC
T ss_pred CccCChHHHHHHHHHHHHh-CC-------CcEEE--eCCHHHHHHHHH--HHhCCCCcCEEEECCCccHHHHHHHHHcCC
Confidence 4667778999999999998 53 57888 999999999984 333 57999999999999999999999999
Q ss_pred eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccc-cCCC
Q 015435 149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGF-ASGS 227 (407)
Q Consensus 149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~-~~~~ 227 (407)
+++.++++ ++++.+|++++++++. +++++++ |+||||... ++++|.++|++||+++|+|++|+.. .+.+
T Consensus 98 ~~~~~~~~-~~~~~~d~~~l~~~i~--~~~~~v~----~~~~~G~~~---~~~~i~~la~~~~~~li~D~a~~~g~~~~~ 167 (367)
T 3nyt_A 98 KPVYVDID-PRTYNLDPQLLEAAIT--PRTKAII----PVSLYGQCA---DFDAINAIASKYGIPVIEDAAQSFGASYKG 167 (367)
T ss_dssp EEEEECBC-TTTCSBCGGGTGGGCC--TTEEEEC----CBCGGGCCC---CHHHHHHHHHHTTCCBEEECTTTTTCEETT
T ss_pred EEEEEecC-CccCCcCHHHHHHhcC--cCCcEEE----eeCCccChh---hHHHHHHHHHHcCCEEEEECccccCCeECC
Confidence 99999983 5557899999999886 4444443 678999754 5888888899999999999998643 2221
Q ss_pred CCchhHHHHHHHHcCCcEEEEEec--CccccccCCCcceeEEeecChhhHHHHHHHHhhhhh--------cccCCCChhH
Q 015435 228 LDADAQSVRMFVADGGECLVAQSY--AKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIR--------PMYSSPPIHG 297 (407)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~s~--sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 297 (407)
. . +...+ .+++.|| +|.++.+|. .|++ +++++++.+++......... ......+.+.
T Consensus 168 ~---~-----~~~~~--di~~~Sf~~~K~l~~~g~-gg~~--~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~ 234 (367)
T 3nyt_A 168 K---R-----SCNLS--TVACTSFFPSAPLGCYGD-GGAI--FTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQ 234 (367)
T ss_dssp E---E-----TTSSS--SEEEEECCTTSSSCCSSC-CEEE--EESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHH
T ss_pred e---e-----ccCCC--CEEEEECCCCCcCCCcCc-eeEE--EeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHH
Confidence 1 0 01111 5777886 899986576 7888 67777766655442221111 0122345544
Q ss_pred HHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-cCCc---ee--EEecCCCHHHHHHhHhh
Q 015435 298 ASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI-IKQI---GM--FTFTGLNSEQVAFMTKE 371 (407)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~---~~--~~~~~~~~~~~~~~l~~ 371 (407)
+.++...++. +++..++.+++++++.+.|++.+. .+. .+.+ .+ +....-+.+.+.+.|.+
T Consensus 235 aa~~~~~l~~----------~~~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 300 (367)
T 3nyt_A 235 AAILLPKLEI----------FEEEIALRQKVAAEYDLSLKQVGI----GTPFIEVNNISVYAQYTVRMDNRESVQASLKA 300 (367)
T ss_dssp HHHHHHHHHT----------HHHHHHHHHHHHHHHHHHHHHTTC----CCCCCCTTEECCCSSEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhccCCe----eccCCCCCCceeeEEEEEEeCCHHHHHHHHHH
Confidence 4444444332 334455666777888888887752 221 1111 11 11112266677777777
Q ss_pred ccEEEcCCC----------------------------eEEecC-CCCCChhHHHHHHHHH
Q 015435 372 YHIYMTSDG----------------------------RISMAG-LSSKTVPHLTDAIHAA 402 (407)
Q Consensus 372 ~gi~~~~gg----------------------------Ris~~~-~~~e~i~~~~~~l~~~ 402 (407)
+||.+.++. |+++.. ++++|++++++.|++.
T Consensus 301 ~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 301 AGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred CCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 899775420 555543 5778999998888753
No 173
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.93 E-value=1.5e-24 Score=209.03 Aligned_cols=323 Identities=17% Similarity=0.128 Sum_probs=193.2
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCC---------CCcHHHHHHHHHHHhCCCCCCCCCCce
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPI---------VGLVDFNKLSAKLILGADSPAIKDNRV 101 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~---------~g~~~l~~~~a~~~~~~~~~~~~~~~i 101 (407)
.+.+.|..+.. + +.++.+++++.+.+. . ...|+.. ....++|+.+++++ +. ++++|
T Consensus 17 ~~~~~Ld~~~~----~-~~~~~v~~a~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~-----~~~~v 81 (432)
T 3a9z_A 17 NRKVYMDYNAT----T-PLEPEVIQAVTEAMK--E--AWGNPSSSYVAGRKAKDIINTARASLAKMI-GG-----KPQDI 81 (432)
T ss_dssp -CCEECBTTTC----C-CCCHHHHHHHHHHHH--H--CCSCTTCSSHHHHHHHHHHHHHHHHHHHHH-TC-----CGGGE
T ss_pred CCcEEeeCCcc----C-CCCHHHHHHHHHHHH--H--hcCCCccCcHHHHHHHHHHHHHHHHHHHHc-CC-----CcCeE
Confidence 34566665542 2 456666666666664 1 1223111 12468999999988 42 34789
Q ss_pred EEeecCCcccHHHHHHHHHHh------hcCCCeEEecCCCCCCh-----------------HHHHhhcCceeeEEEeecC
Q 015435 102 TTVQCLSGTGSLRVGAEFLAR------HYHQLTIYIPQPTWGNH-----------------PKVFTLAGLSVKTYRYYDP 158 (407)
Q Consensus 102 ~~~~t~g~t~a~~~~~~~~~~------~~~gd~Vi~~~p~y~~~-----------------~~~~~~~G~~~~~v~~~~~ 158 (407)
++ |+|+++++.+++..+.. ..+||+|+++.|+|..+ ....+..|.+++.+|++ +
T Consensus 82 ~~--~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~-~ 158 (432)
T 3a9z_A 82 IF--TSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVS-K 158 (432)
T ss_dssp EE--ESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCC-T
T ss_pred EE--eCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecC-c
Confidence 99 99999999998644421 14899999999999876 23334579999999984 3
Q ss_pred CCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC----------ceeeeccccccccCCCC
Q 015435 159 ATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKG----------LLPFFDSAYQGFASGSL 228 (407)
Q Consensus 159 ~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~----------~~li~D~~y~~~~~~~~ 228 (407)
.++.+|++++++.+. ++++++++ ++|+||||.+++. ++|.++|+++| +++|+|++|..+.. ..
T Consensus 159 ~~~~~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~~---~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~-~~ 231 (432)
T 3a9z_A 159 VNGQVEVEDILAAVR--PTTCLVTI-MLANNETGVIMPI---SEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR-RV 231 (432)
T ss_dssp TTSSCCHHHHHHTCC--TTEEEEEC-CSBCTTTCBBCCH---HHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS-CC
T ss_pred ccCCcCHHHHHHhcc--CCceEEEE-ECcccCcccccCH---HHHHHHHHhcCcccccccCCceEEEEEchhhhCCc-cc
Confidence 346789999999886 45566555 9999999999985 56777899999 99999999965432 11
Q ss_pred CchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhh-------hhcccCCCChhHHHHH
Q 015435 229 DADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLV-------IRPMYSSPPIHGASIV 301 (407)
Q Consensus 229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 301 (407)
+ +.. ... .+++.|+||.+| .|+||+ +++++... ..+... ......+++..++.++
T Consensus 232 --~---~~~---~~~-d~~~~s~~K~~g---~~~G~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 293 (432)
T 3a9z_A 232 --D---VED---LGV-DFLTIVGHKFYG---PRIGAL--YVRGVGKL----TPLYPMLFGGGQERNFRPGTENTPMIAGL 293 (432)
T ss_dssp --C---HHH---HCC-SEEEEEGGGTTC---CSCEEE--EETTBTTT----BCCCCSCCSSCGGGGTSCSCCCHHHHHHH
T ss_pred --C---hhh---cCC-CEEEEehhHhcC---CcceEE--EEcccccc----CCcCceeecCCccccccCCCcCHHHHHHH
Confidence 1 111 122 356899999764 579999 56633201 111110 1112235666667666
Q ss_pred HHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcccc--cC------C--ceeEEecCC--CHHHHHHh
Q 015435 302 ATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR-GTPGDWSHI--IK------Q--IGMFTFTGL--NSEQVAFM 368 (407)
Q Consensus 302 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~--~~------~--~~~~~~~~~--~~~~~~~~ 368 (407)
..+++.. .+.+++.+++++++++++.+.|+++ + +.+. .+ . ...|.+.+. +.+.+...
T Consensus 294 ~aal~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (432)
T 3a9z_A 294 GKAADLV------SENCETYEAHMRDIRDYLEERLEAEFG----KRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQ 363 (432)
T ss_dssp HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHG----GGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHH
T ss_pred HHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHhccC----CcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHH
Confidence 6566532 2346778888999999999999874 4 2221 11 1 122344442 44433322
Q ss_pred Hh----hccEEEcC-------------C-------C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 369 TK----EYHIYMTS-------------D-------G--RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 369 l~----~~gi~~~~-------------g-------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
+. +.|+.+.+ | + ||+++. .+++++++++++|+++++++
T Consensus 364 l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~ 428 (432)
T 3a9z_A 364 CQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQL 428 (432)
T ss_dssp CSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 21 12222211 1 3 999875 36899999999999998754
No 174
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.93 E-value=2.8e-25 Score=208.63 Aligned_cols=289 Identities=12% Similarity=0.060 Sum_probs=181.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCe--EEecCCCCCChH---HH
Q 015435 68 VKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLT--IYIPQPTWGNHP---KV 142 (407)
Q Consensus 68 ~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~--Vi~~~p~y~~~~---~~ 142 (407)
...|.+..+..++++.+++++ +. +..++ ++||++++.+++ ...+.+||+ |+++.++|.... ..
T Consensus 41 ~~~~~~~~~~~~l~~~la~~~-~~-------~~~i~--~~~g~~a~~~a~--~~~~~~g~~~vvi~~~~~~~~~~~~~~~ 108 (359)
T 3pj0_A 41 SDIYGNGAVIEDFETKIAKIL-GK-------QSAVF--FPSGTMAQQIAL--RIWADRKENRRVAYHPLSHLEIHEQDGL 108 (359)
T ss_dssp CCBTTBSHHHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHH--HHHHHHHTCCEEEECTTCHHHHSSTTHH
T ss_pred cCcccCCHHHHHHHHHHHHHh-CC-------CcEEE--eCCHHHHHHHHH--HHHHhcCCCcEEEEeccceeeehhcchH
Confidence 345777778999999999988 43 34466 788889998885 333567776 555555443222 12
Q ss_pred HhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHHcCceeeeccccc
Q 015435 143 FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPT-GVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ 221 (407)
Q Consensus 143 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~D~~y~ 221 (407)
....|.+++.++. .++.+|+++++++ . ++++++++ ++|+||| |.+++.+++++|+++|++||++||+|++|.
T Consensus 109 ~~~~g~~~~~v~~---~~~~~d~~~l~~~-~--~~~~~v~~-~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~ 181 (359)
T 3pj0_A 109 KELQQITPLLLGT---ANQLLTIDDIKSL-R--EPVSSVLI-ELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARL 181 (359)
T ss_dssp HHHHCCEEEECSC---TTSCCCHHHHHTC-S--SCCSEEEE-ESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTC
T ss_pred HHhcCceEEecCC---cCCCcCHHHHHhc-c--CCceEEEE-EecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcch
Confidence 2457999988876 2467999999987 3 56788777 8999998 799999999999999999999999999976
Q ss_pred cccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCC--ChhHHH
Q 015435 222 GFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSP--PIHGAS 299 (407)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 299 (407)
.+.... ...+...+.. ...+++.|+||.++.++ + |++ +.++++.+.+.. .......+. ....+.
T Consensus 182 ~~~~~~---~~~~~~~~~~--~~d~~~~s~sK~~~~~~-g-g~~---~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~ 247 (359)
T 3pj0_A 182 WEITPF---YQKSAEEICA--LFDSVYVSFYKGIGGIA-G-AIL---AGNDDFVQEAKI----WKRRYGGDLISLYPYIL 247 (359)
T ss_dssp GGGHHH---HTCCHHHHHT--TCSEEEEESSSTTCCSS-C-EEE---EECHHHHHHHHH----HHHHTTCCCSCCHHHHH
T ss_pred hcchhh---hCCCHHHhhc--cCCEEEEeccccCCCcc-e-EEE---ECCHHHHHHHHH----HHHHhCCCcchhHHHHH
Confidence 443110 0001112222 22345569999887552 2 555 555655554433 222211122 222222
Q ss_pred HHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-cCCceeEEec--CCC----HHHHHHhHhhc
Q 015435 300 IVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI-IKQIGMFTFT--GLN----SEQVAFMTKEY 372 (407)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~--~~~----~~~~~~~l~~~ 372 (407)
++...++ +.. +..+++.++++++.+.|++++. +.+. .+..+.+.|+ +.. .+.+.+.|.++
T Consensus 248 a~~~~l~---------~~~-~~~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 314 (359)
T 3pj0_A 248 SADYYFE---------KRI-GKMAEYFEAAKGLAERFNSCSG---VKTVPEVPVSNMFHVYFENSADEIGAILTKIQDET 314 (359)
T ss_dssp HHHHHHH---------HHG-GGHHHHHHHHHHHHHHHHTSTT---EEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---------HHH-HHhHHHHHHHHHHHHHHhhCCC---ceeeccCCcceEEEEEecCccchhHHHHHHHHHhc
Confidence 2222222 112 2334467788899999988732 6653 3444445554 332 34566677779
Q ss_pred cEEEcCCC----------eEEecC----CCCCChhHHHHHHHHH
Q 015435 373 HIYMTSDG----------RISMAG----LSSKTVPHLTDAIHAA 402 (407)
Q Consensus 373 gi~~~~gg----------Ris~~~----~~~e~i~~~~~~l~~~ 402 (407)
||.+.||. |++++. .+.+++++++++|.+.
T Consensus 315 GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 315 GVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp CEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred CcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 99999872 776652 2456677777777654
No 175
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.93 E-value=1.9e-23 Score=198.25 Aligned_cols=279 Identities=15% Similarity=0.111 Sum_probs=193.5
Q ss_pred CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----HhhcCc
Q 015435 73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----FTLAGL 148 (407)
Q Consensus 73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----~~~~G~ 148 (407)
+..+..++++++++++ +.. +.+++ ++| ++++.++++.+ +.+||+|+++.|+|.+.... ++..|.
T Consensus 50 ~~~~~~~l~~~la~~~-~~~------~~i~~--~sG-t~a~~~~~~~~--~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~ 117 (386)
T 1cs1_A 50 GNPTRDVVQRALAELE-GGA------GAVLT--NTG-MSAIHLVTTVF--LKPGDLLVAPHDCYGGSYRLFDSLAKRGCY 117 (386)
T ss_dssp CCHHHHHHHHHHHHHH-TCS------EEEEE--SSH-HHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHHHTTTSC
T ss_pred CCccHHHHHHHHHHHh-CCC------cEEEe--CCH-HHHHHHHHHHH--hCCCCEEEEecCCcHhHHHHHHHHHHhcCC
Confidence 4566789999999998 431 45555 555 99999985433 77999999999999875554 367788
Q ss_pred eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435 149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL 228 (407)
Q Consensus 149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~ 228 (407)
+++.++. .|++++++.+. ++++++++ ++|+||||.+++ +++|+++|++||+++|+|++|..+....
T Consensus 118 ~~~~~~~-------~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~- 183 (386)
T 1cs1_A 118 RVLFVDQ-------GDEQALRAALA--EKPKLVLV-ESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN- 183 (386)
T ss_dssp EEEEECT-------TCHHHHHHHHH--TCCSEEEE-ECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred EEEEeCC-------CCHHHHHHhhc--cCCcEEEE-eCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 9888865 28899999998 56788777 899999999885 7888888999999999999998877531
Q ss_pred CchhHHHHHHHHcCCcEEEEEecCccccccCCCc-ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC
Q 015435 229 DADAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD 307 (407)
Q Consensus 229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
. + ..+..+++.|+||.++.+|.|+ ||+ +++++++.+.+.. ....+..+.+...+.++...++.
T Consensus 184 --~------~--~~~~di~~~s~sK~~~~~~~~~~G~~--~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~l~~ 247 (386)
T 1cs1_A 184 --P------L--ALGADLVLHSCTKYLNGHSDVVAGVV--IAKDPDVVTELAW----WANNIGVTGGAFDSYLLLRGLRT 247 (386)
T ss_dssp --G------G--GGTCSEEEEETTTTTTCSSCCCCEEE--EESSHHHHHHHHH----HHHHHTCBCCHHHHHHHHHHHTT
T ss_pred --c------c--ccCceEEEEcCcccccCCCCceeEEE--EeCcHHHHHHHHH----HHHhcCCCCCHHHHHHHHhcccH
Confidence 1 1 1246789999999999899987 888 5765455554433 33323335666666666555542
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Ccccc----cCCceeEEec-CCCHHHHHHhHhh
Q 015435 308 STMYKEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWSHI----IKQIGMFTFT-GLNSEQVAFMTKE 371 (407)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~~----~~~~~~~~~~-~~~~~~~~~~l~~ 371 (407)
+....+++.++.+.+.+.+++++. +. .+.+. ...++++.+. .-..+.+...|++
T Consensus 248 ----------~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 317 (386)
T 1cs1_A 248 ----------LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGG 317 (386)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHT
T ss_pred ----------HHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHHh
Confidence 233445566677777777766531 00 01111 1236665543 2135667777788
Q ss_pred ccEEEcC---C-----------------------------C--eEEecCCCCCChhHHHHHHHHHHHhh
Q 015435 372 YHIYMTS---D-----------------------------G--RISMAGLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 372 ~gi~~~~---g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~~ 406 (407)
+||.+.+ | + ||+++. ++.++.++++.++++++
T Consensus 318 ~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~---~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 318 LSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRAA 383 (386)
T ss_dssp CSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHHH
T ss_pred CCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc---CCHHHHHHHHHHHHHHh
Confidence 8998762 2 2 888774 67788888888877653
No 176
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.93 E-value=5.4e-24 Score=202.78 Aligned_cols=277 Identities=16% Similarity=0.189 Sum_probs=186.2
Q ss_pred CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCc
Q 015435 73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGL 148 (407)
Q Consensus 73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~ 148 (407)
+.....++++.+++++ +. ++.++ ++||++++..++ ...+.+||+|+++.|+|.++...+ ...|.
T Consensus 63 ~~~~~~~l~~~la~~~-g~-------~~~i~--~~sG~~a~~~~l--~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~ 130 (398)
T 1gc0_A 63 SNPTLNLLEARMASLE-GG-------EAGLA--LASGMGAITSTL--WTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV 130 (398)
T ss_dssp CCHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHHH--HHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTC
T ss_pred CChHHHHHHHHHHHHh-CC-------CcEEE--ECCHHHHHHHHH--HHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCC
Confidence 4556888999999988 43 35566 667789999985 334779999999999999887766 67799
Q ss_pred eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435 149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL 228 (407)
Q Consensus 149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~ 228 (407)
+++.++. .|++++++.+. ++++++++ ++|+||||.+.+ +++|+++|++||+++|+|++|..+....
T Consensus 131 ~~~~~~~-------~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~- 196 (398)
T 1gc0_A 131 KLRHVDM-------ADLQALEAAMT--PATRVIYF-ESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR- 196 (398)
T ss_dssp EEEEECT-------TCHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC-
T ss_pred EEEEECC-------CCHHHHHHhcC--CCCeEEEE-ECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 9888865 27899999887 55667666 899999999885 8888889999999999999997665421
Q ss_pred CchhHHHHHHHHcCCcEEEEEecCccccccCCCc-ceeEEeecChhhHHHHHHHHhhhhhc-ccCCCChhHHHHHHHHhc
Q 015435 229 DADAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GALSIVCKTEDVASRVESQLKLVIRP-MYSSPPIHGASIVATILK 306 (407)
Q Consensus 229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ 306 (407)
. + ..+..+++.|+||.++.+|.|+ |++ +++ ++..+ ..+...... ...+.+...+.++...++
T Consensus 197 --~------~--~~~~d~~~~S~sK~~~~~~~~~~G~l--~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (398)
T 1gc0_A 197 --P------L--ELGADLVVHSATKYLSGHGDITAGIV--VGS-QALVD---RIRLQGLKDMTGAVLSPHDAALLMRGIK 260 (398)
T ss_dssp --G------G--GGTCSEEEEETTTTTTCSSSCCCEEE--EEC-HHHHH---HHHHTHHHHHTCCCCCHHHHHHHHHHHT
T ss_pred --c------h--hhCceEEEECCccccCCCCCCeEEEE--EEC-hHHHH---HHHHHHhhccCCCCCCHHHHHHHHhccc
Confidence 0 1 1245789999999999999998 777 455 33222 123322222 233566777777666665
Q ss_pred ChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Cccccc----CCceeEEecCC--CHHHHHHhH
Q 015435 307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWSHII----KQIGMFTFTGL--NSEQVAFMT 369 (407)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~~~----~~~~~~~~~~~--~~~~~~~~l 369 (407)
.. ....++..++.+.+.+.|++.+. +. .+.+.. ..++++.+ .+ ..+.+..++
T Consensus 261 ~~----------~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~l 329 (398)
T 1gc0_A 261 TL----------NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAF-ELKGGIGAGRRFM 329 (398)
T ss_dssp TH----------HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEE-EETTHHHHHHHHH
T ss_pred hH----------HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEE-EECCCHHHHHHHH
Confidence 32 23345555666777777766431 00 011111 24666655 33 234567777
Q ss_pred hhccEEEcC---C-----------------------------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435 370 KEYHIYMTS---D-----------------------------G--RISMAGLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 370 ~~~gi~~~~---g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 405 (407)
++.++.+.. | + |||++. ++.+..++.+.+++++
T Consensus 330 ~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~---~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 330 NALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGL---EDIDDLLADVQQALKA 396 (398)
T ss_dssp HHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred HhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHHHHh
Confidence 777765532 1 2 888774 5566666666666654
No 177
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.93 E-value=6.2e-24 Score=202.68 Aligned_cols=237 Identities=14% Similarity=0.065 Sum_probs=162.3
Q ss_pred chhHHHHHHHHhccccccccCC--CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCe
Q 015435 51 LNVVRKAEQLLVNDQSRVKEYL--PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLT 128 (407)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~y~--~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~ 128 (407)
.+..+...+.+. .....+.|+ +.....++++.+++++ +. +++++ ++||++|+.+++ ...+.+||+
T Consensus 56 ~~~~~~~~~~~~-~~~~~~~y~r~~~p~~~~l~~~la~~~-g~-------~~~~~--~~sG~~Ai~~al--~~l~~~Gd~ 122 (414)
T 3ndn_A 56 YGSAAVAEKSFA-GELDHYVYSRYGNPTVSVFEERLRLIE-GA-------PAAFA--TASGMAAVFTSL--GALLGAGDR 122 (414)
T ss_dssp CSSHHHHHHHHT-TSSCCCCBTTTCCHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHHH--HTTCCTTCE
T ss_pred cCChHHHHHHHh-CCcCCcCcCCCCChHHHHHHHHHHHHH-CC-------CcEEE--ECCHHHHHHHHH--HHHhCCCCE
Confidence 344444444443 222233343 2334677788888877 42 67888 999999999884 445789999
Q ss_pred EEecCCCCCChHHHHhh----cCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHH
Q 015435 129 IYIPQPTWGNHPKVFTL----AGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIR 204 (407)
Q Consensus 129 Vi~~~p~y~~~~~~~~~----~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~ 204 (407)
|++++|+|.++...+.. .|.+++.++.. |++++++++. ++++++++ ++|+||||.+.+ +++|+
T Consensus 123 Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~ai~--~~t~~v~l-e~p~NptG~~~~---l~~i~ 189 (414)
T 3ndn_A 123 LVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-------DLSQWERALS--VPTQAVFF-ETPSNPMQSLVD---IAAVT 189 (414)
T ss_dssp EEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------CHHHHHHHTS--SCCSEEEE-ESSCTTTCCCCC---HHHHH
T ss_pred EEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-------CHHHHHHhcC--CCCeEEEE-ECCCCCCCcccc---HHHHH
Confidence 99999999998777654 89999999761 8899999987 67788888 999999999865 77888
Q ss_pred HHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHh
Q 015435 205 QLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLK 283 (407)
Q Consensus 205 ~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~ 283 (407)
++|+++|+++|+|++|........ + .....+++.|+||.++.+| +++|++ +++ ++... ..+.
T Consensus 190 ~la~~~g~~livDe~~~~~~~~~~---------~--~~g~div~~S~sK~l~~~G~~~~G~v--v~~-~~~~~---~~l~ 252 (414)
T 3ndn_A 190 ELAHAAGAKVVLDNVFATPLLQQG---------F--PLGVDVVVYSGTKHIDGQGRVLGGAI--LGD-REYID---GPVQ 252 (414)
T ss_dssp HHHHHTTCEEEEECTTTHHHHCCC---------G--GGTCSEEEEETTTTTTCSSCCCCEEE--EEC-HHHHT---THHH
T ss_pred HHHHHcCCEEEEECCCcccccCCc---------h--hcCCCeEeccCCccccCCCCceEEEE--EEC-HHHHH---HHHH
Confidence 899999999999999873322110 1 1234688999999999888 788988 565 32222 1233
Q ss_pred hhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435 284 LVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG 340 (407)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 340 (407)
..........+...+.++...++. +....++..++++.+.+.|++.+
T Consensus 253 ~~~~~~g~~~~~~~a~~~~~~l~~----------l~~r~~~~~~~a~~l~~~L~~~p 299 (414)
T 3ndn_A 253 KLMRHTGPAMSAFNAWVLLKGLET----------LAIRVQHSNASAQRIAEFLNGHP 299 (414)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHGGG----------HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhcCC
Confidence 222222334455444444433332 34445666778888888888764
No 178
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.93 E-value=6.1e-25 Score=204.07 Aligned_cols=246 Identities=17% Similarity=0.136 Sum_probs=164.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCceeeEEE
Q 015435 79 DFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGLSVKTYR 154 (407)
Q Consensus 79 ~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~~~~~v~ 154 (407)
++++.+++++ +. ++.++ +++|++++.+++. ..+.+||+|+++.|+|.++...+ +..|.+++.++
T Consensus 2 ~l~~~la~~~-g~-------~~~i~--~~sG~~a~~~~~~--~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 69 (331)
T 1pff_A 2 ALEGKIAKLE-HA-------EACAA--TASGMGAIAASVW--TFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID 69 (331)
T ss_dssp HHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHHHH--HHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred hHHHHHHHHh-CC-------CeEEE--eCChHHHHHHHHH--HhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeC
Confidence 6889999988 43 24444 5555899999853 33679999999999999887765 45899998886
Q ss_pred eecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHH-cCceeeeccccccccCCCCCchhH
Q 015435 155 YYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRS-KGLLPFFDSAYQGFASGSLDADAQ 233 (407)
Q Consensus 155 ~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~-~~~~li~D~~y~~~~~~~~~~~~~ 233 (407)
. .|++++++.++ ++++++++ ++|+||||.+++ +++|+++|++ +|+++|+|++|..+.... +
T Consensus 70 ~-------~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~---~-- 131 (331)
T 1pff_A 70 M-------AVPGNIEKHLK--PNTRIVYF-ETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN---P-- 131 (331)
T ss_dssp T-------TSTTHHHHTCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC---G--
T ss_pred C-------CCHHHHHHhhc--CCCeEEEE-ECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC---h--
Confidence 5 47888988886 55667666 899999999986 8888888999 999999999997554321 0
Q ss_pred HHHHHHHcCCcEEEEEecCccccccCCC-cceeEEeecChhhHHHHHHHHhhhhhc-ccCCCChhHHHHHHHHhcChhhH
Q 015435 234 SVRMFVADGGECLVAQSYAKNMGLYGER-VGALSIVCKTEDVASRVESQLKLVIRP-MYSSPPIHGASIVATILKDSTMY 311 (407)
Q Consensus 234 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r-~G~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 311 (407)
+ ..+..+++.|+||.++.+|.| +||+ +++++ .+.+.+...... ...+.+...+.++...++.
T Consensus 132 ----~--~~~~d~~~~s~~K~~~~~~~r~~G~~--~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---- 195 (331)
T 1pff_A 132 ----L--DLGVDIVVHSATKYINGHTDVVAGLV--CSRAD----IIAKVKSQGIKDITGAIISPHDAWLITRGTLT---- 195 (331)
T ss_dssp ----G--GGTCSEEEEETTTTTSSSSSCCCEEE--EECHH----HHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH----
T ss_pred ----h--hcCCcEEEEECccccCCCCCceEEEE--EeCcH----HHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch----
Confidence 1 134689999999999999999 7888 56622 344445544443 3345666666665544432
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC-----Cccccc----CCceeEEecCCCHHHHHHhHhhccEEE
Q 015435 312 KEWTLELKAMADRIISMRQQLFDALSARGT------PG-----DWSHII----KQIGMFTFTGLNSEQVAFMTKEYHIYM 376 (407)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~gi~~ 376 (407)
.....++..++.+.+.+.+++... +. .+.+.. ..++++.+.-.+.+.+...++++||.+
T Consensus 196 ------~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~ 269 (331)
T 1pff_A 196 ------LDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVS 269 (331)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSE
T ss_pred ------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHhCCCce
Confidence 122223334444444555443210 00 122221 135555543226677888888899954
No 179
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.93 E-value=1.3e-23 Score=199.59 Aligned_cols=215 Identities=16% Similarity=0.100 Sum_probs=161.0
Q ss_pred CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCce
Q 015435 74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGLS 149 (407)
Q Consensus 74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~~ 149 (407)
.....++++.+++++ +. +++++ ++||++|+.+++ ...+.+||+|+++.|+|.++...+ +..|.+
T Consensus 65 ~~~~~~l~~~la~~~-g~-------~~~~~--~~sGt~A~~~al--~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~ 132 (392)
T 3qhx_A 65 NPTRTALEAALAAVE-DA-------AFGRA--FSSGMAAADCAL--RAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVE 132 (392)
T ss_dssp CHHHHHHHHHHHHHT-TC-------SEEEE--ESSHHHHHHHHH--HHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCE
T ss_pred ChHHHHHHHHHHHHh-CC-------CcEEE--ECCHHHHHHHHH--HHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcE
Confidence 445778999999987 43 46888 999999999985 334789999999999998877666 678999
Q ss_pred eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435 150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD 229 (407)
Q Consensus 150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~ 229 (407)
++.++. .|++++++++. ++++++++ ++|+||||.+.+ +++|+++|++||+++|+|++|..+....
T Consensus 133 ~~~v~~-------~d~~~l~~~i~--~~~~~v~~-~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~~-- 197 (392)
T 3qhx_A 133 YTPVAL-------ADLDAVRAAIR--PTTRLIWV-ETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQQ-- 197 (392)
T ss_dssp EEEECT-------TCHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC--
T ss_pred EEEeCC-------CCHHHHHHhhC--CCCeEEEE-ECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence 998876 28899999987 56777776 899999999875 8888999999999999999997554321
Q ss_pred chhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435 230 ADAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS 308 (407)
Q Consensus 230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (407)
.. .....+++.|+||.++.+| .|+||+ +++++++.+.+ ..........+++..+.++...++..
T Consensus 198 --~~-------~~~~di~~~S~sK~lg~~g~~~~G~v--~~~~~~~~~~l----~~~~~~~g~~~~~~~~~~~~~~l~~l 262 (392)
T 3qhx_A 198 --PL-------SLGADVVLHSTTKYIGGHSDVVGGAL--VTNDEELDQSF----AFLQNGAGAVPGPFDAYLTMRGLKTL 262 (392)
T ss_dssp --GG-------GGTCSEEEEETTTTTTCSSCCCCEEE--EESCHHHHHHH----HHHHHHHCCCCCHHHHHHHHHHHTTH
T ss_pred --hH-------HhCCcEEEEcCccccCCCCCceEEEE--EECcHHHHHHH----HHHHHhcCCCCCHHHHHHHHhhhhHH
Confidence 11 1234688999999999877 789998 67766554443 33333344566777777777666543
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435 309 TMYKEWTLELKAMADRIISMRQQLFDALSARG 340 (407)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 340 (407)
....++..++.+.+.+.|++.+
T Consensus 263 ----------~~~~~~~~~~~~~l~~~L~~~~ 284 (392)
T 3qhx_A 263 ----------VLRMQRHSENAAAVAEFLAEHP 284 (392)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTCT
T ss_pred ----------HHHHHHHHHHHHHHHHHHhcCC
Confidence 2334556667777888887653
No 180
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.93 E-value=3.5e-24 Score=202.27 Aligned_cols=305 Identities=8% Similarity=-0.003 Sum_probs=203.7
Q ss_pred cccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh---hc
Q 015435 48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR---HY 124 (407)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~---~~ 124 (407)
+.++.+.+++.+.+. . ..|.+.....++++.+++++ +. +++++ |+||++++.+++ ... +.
T Consensus 10 ~~~~~v~~a~~~~~~--~---~~~~~~~~~~~l~~~la~~~-~~-------~~v~~--~~ggt~al~~~~--~~~~~~~~ 72 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLN--S---KQLTQGKRSLLFEEALCEFL-GV-------KHALV--FNSATSALLTLY--RNFSEFSA 72 (375)
T ss_dssp CCCHHHHHHHHHHHT--S---SCCSSSHHHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHH--HHSSCCCT
T ss_pred CCCHHHHHHHHHHHH--c---CcccCChHHHHHHHHHHHHh-CC-------CeEEE--eCCHHHHHHHHH--HHhcccCC
Confidence 445566666666664 1 22445567889999999998 53 48999 999999999984 444 56
Q ss_pred CCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHH
Q 015435 125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIR 204 (407)
Q Consensus 125 ~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~ 204 (407)
+||+|+++.|+|..+...+...|++++.++++ +. +.+|++++++.+. ++++++++ ++ |||.+.+ +++|.
T Consensus 73 ~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~-~~~d~~~l~~~i~--~~~~~v~~-~~---~tG~~~~---l~~i~ 141 (375)
T 2fnu_A 73 DRNEIITTPISFVATANMLLESGYTPVFAGIK-ND-GNIDELALEKLIN--ERTKAIVS-VD---YAGKSVE---VESVQ 141 (375)
T ss_dssp TSCEEEECSSSCTHHHHHHHHTTCEEEECCBC-TT-SSBCGGGSGGGCC--TTEEEEEE-EC---GGGCCCC---HHHHH
T ss_pred CCCEEEECCCccHhHHHHHHHCCCEEEEeccC-CC-CCCCHHHHHhhcC--cCceEEEE-eC---CcCCccC---HHHHH
Confidence 89999999999999999999999999999983 33 4789999998886 45566555 43 3999876 68888
Q ss_pred HHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecC--ccccccCCCcceeEEee-cChhhHHHHHHH
Q 015435 205 QLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYA--KNMGLYGERVGALSIVC-KTEDVASRVESQ 281 (407)
Q Consensus 205 ~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s--K~~~~~G~r~G~~~~v~-~~~~~~~~~~~~ 281 (407)
++|++||+++|+|++|+.+.... . .. +.... .+.+.|+| |.++. | +|++ ++ +++++.+++...
T Consensus 142 ~l~~~~~~~li~D~a~~~~~~~~---~-~~---~~~~~--~i~~~s~s~~K~~~~-g--~g~~--~~~~~~~~~~~~~~~ 207 (375)
T 2fnu_A 142 KLCKKHSLSFLSDSSHALGSEYQ---N-KK---VGGFA--LASVFSFHAIKPITT-A--EGGA--VVTNDSELHEKMKLF 207 (375)
T ss_dssp HHHHHHTCEEEEECTTCTTCEET---T-EE---TTSSS--SEEEEECCTTSSSCC-S--SCEE--EEESCHHHHHHHHHH
T ss_pred HHHHHcCCEEEEECccccCCeEC---C-ee---ccccC--CeEEEeCCCCCCccc-c--CceE--EEeCCHHHHHHHHHH
Confidence 88999999999999987544211 0 00 11111 37788888 99975 6 6887 45 556665555442
Q ss_pred Hhhhh----------hccc--CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 015435 282 LKLVI----------RPMY--SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII 349 (407)
Q Consensus 282 ~~~~~----------~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 349 (407)
..... .... ...+.+...++...+ +.+++..++.+++++++.+.|++++. +.+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~ 274 (375)
T 2fnu_A 208 RSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQL----------KKAPFLMQKREEAALTYDRIFKDNPY---FTPLH 274 (375)
T ss_dssp TBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHH----------TTHHHHHHHHHHHHHHHHHHHTTCSS---EEESG
T ss_pred HhcCCccccccccccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhcCCC---ccccC
Confidence 21111 0000 122232222222111 22456677888899999999988632 55443
Q ss_pred C----Cce-eEEec--C---C-CHHHHHHhHhhccEEEcC----C-----------------------C--eEEecC-CC
Q 015435 350 K----QIG-MFTFT--G---L-NSEQVAFMTKEYHIYMTS----D-----------------------G--RISMAG-LS 388 (407)
Q Consensus 350 ~----~~~-~~~~~--~---~-~~~~~~~~l~~~gi~~~~----g-----------------------g--Ris~~~-~~ 388 (407)
+ .++ ++.++ + . +.+.+.+.|.++||.+.. + + ||+++. .+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t 354 (375)
T 2fnu_A 275 PLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLN 354 (375)
T ss_dssp GGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCC
T ss_pred CCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCC
Confidence 3 122 22233 2 2 455565566678998872 1 2 887764 47
Q ss_pred CCChhHHHHHHHHHHHhhC
Q 015435 389 SKTVPHLTDAIHAAVTRMG 407 (407)
Q Consensus 389 ~e~i~~~~~~l~~~l~~~~ 407 (407)
++++++++++|++++++++
T Consensus 355 ~~~i~~~~~~l~~~~~~~~ 373 (375)
T 2fnu_A 355 LESVQNIAHSVLKTFESFK 373 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7999999999999987653
No 181
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.92 E-value=4e-24 Score=203.66 Aligned_cols=277 Identities=15% Similarity=0.129 Sum_probs=188.0
Q ss_pred CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----HhhcCc
Q 015435 73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----FTLAGL 148 (407)
Q Consensus 73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----~~~~G~ 148 (407)
+..+..++++++++++ +.. +.+++ ++ |++++.+++ . .+.+||+|++++|+|.+.... ++..|.
T Consensus 65 ~~p~~~~l~~~la~~~-g~~------~~i~~--~s-G~~ai~~~~--~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 131 (403)
T 3cog_A 65 GNPTRNCLEKAVAALD-GAK------YCLAF--AS-GLAATVTIT--H-LLKAGDQIICMDDVYGGTNRYFRQVASEFGL 131 (403)
T ss_dssp -CHHHHHHHHHHHHHH-TCS------EEEEE--SC-HHHHHHHHH--T-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTC
T ss_pred CCchHHHHHHHHHHHh-CCC------cEEEE--CC-HHHHHHHHH--H-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCC
Confidence 4467789999999998 431 44555 54 568998884 3 477999999999999875543 357899
Q ss_pred eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC-ceeeeccccccccCCC
Q 015435 149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKG-LLPFFDSAYQGFASGS 227 (407)
Q Consensus 149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~-~~li~D~~y~~~~~~~ 227 (407)
+++.++.. |++++++.+. ++++++++ ++|+||||.+++ +++|+++|+++| +++|+|++|..+.+..
T Consensus 132 ~v~~v~~~-------d~~~l~~~i~--~~t~~v~~-~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~~ 198 (403)
T 3cog_A 132 KISFVDCS-------KIKLLEAAIT--PETKLVWI-ETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQR 198 (403)
T ss_dssp EEEEECTT-------SHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTCC
T ss_pred EEEEECCC-------CHHHHHHhcC--cCCeEEEE-ECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccCC
Confidence 99998761 8899999887 56677776 899999999986 888888999999 9999999998776431
Q ss_pred CCchhHHHHHHHHcCCcEEEEEecCccccccCC-CcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhc
Q 015435 228 LDADAQSVRMFVADGGECLVAQSYAKNMGLYGE-RVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK 306 (407)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 306 (407)
. + . .+..++++|+||.++.+|. |+||+ +++++++.+.+.. ....+....+.+.+.++...++
T Consensus 199 ~------~----~-~~~div~~S~sK~~~g~~~~~~G~v--~~~~~~l~~~l~~----~~~~~g~~~~~~~~~~~~~~l~ 261 (403)
T 3cog_A 199 P------L----A-LGADISMYSATKYMNGHSDVVMGLV--SVNCESLHNRLRF----LQNSLGAVPSPIDCYLCNRGLK 261 (403)
T ss_dssp T------T----T-TTCSEEEEETTTTTTCSSCCCCEEE--EECCHHHHHHHHH----HHHHHCCCCCHHHHHHHHHHHT
T ss_pred c------c----c-cCCeEEEEcChhhccCCCCCeEEEE--EECcHHHHHHHHH----HHHhcCCCCCHHHHHHHHhhhh
Confidence 1 1 1 2467999999999997764 78998 5766665554433 3333344567777777777776
Q ss_pred ChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CC--CcccccC----CceeEEec-CCCHHHHHHhHh
Q 015435 307 DSTMYKEWTLELKAMADRIISMRQQLFDALSARGT---------PG--DWSHIIK----QIGMFTFT-GLNSEQVAFMTK 370 (407)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---------~~--~~~~~~~----~~~~~~~~-~~~~~~~~~~l~ 370 (407)
... ...++..++...+.+.+++.+. +. .+.+..+ .++++.|. .-..+.+.++++
T Consensus 262 ~l~----------~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~ 331 (403)
T 3cog_A 262 TLH----------VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLK 331 (403)
T ss_dssp THH----------HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHH
T ss_pred HHH----------HHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHH
Confidence 432 2223334445555555544310 00 1333333 37777774 213355677777
Q ss_pred hccEEEc-------------C----------------C---C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435 371 EYHIYMT-------------S----------------D---G--RISMAGLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 371 ~~gi~~~-------------~----------------g---g--Ris~~~~~~e~i~~~~~~l~~~l~~ 405 (407)
+.+|.+. | | + |||++. ++.+..++.|.+++++
T Consensus 332 ~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~---e~~~d~i~~l~~al~~ 397 (403)
T 3cog_A 332 NLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGL---EDEEDLLEDLDQALKA 397 (403)
T ss_dssp HCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred hCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC---CCHHHHHHHHHHHHHH
Confidence 7777432 1 1 2 888874 6677778888777764
No 182
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.92 E-value=1.6e-22 Score=193.93 Aligned_cols=272 Identities=17% Similarity=0.091 Sum_probs=180.0
Q ss_pred CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH----HhhcCcee
Q 015435 75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV----FTLAGLSV 150 (407)
Q Consensus 75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~----~~~~G~~~ 150 (407)
....++++.+++++ +. ++.++ +++|++++.+++ ...+.+||+|+++.+.|.+.... ++..|.++
T Consensus 114 ~~~~~l~~~lA~l~-g~-------~~~v~--~~sG~~Ai~~al--~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v 181 (445)
T 1qgn_A 114 PTTVVLEEKISALE-GA-------ESTLL--MASGMCASTVML--LALVPAGGHIVTTTDCYRKTRIFIETILPKMGITA 181 (445)
T ss_dssp HHHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHH--HHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEE
T ss_pred hHHHHHHHHHHHHh-CC-------CcEEE--eCCHHHHHHHHH--HHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEE
Confidence 34668999999988 43 23444 555569999984 44478999999999999987764 55789999
Q ss_pred eEEEeecCCCCCcChhhHHHHHHcCCCC-cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCC
Q 015435 151 KTYRYYDPATRGLNFQGLLEDLRAAPSG-AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLD 229 (407)
Q Consensus 151 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~-~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~ 229 (407)
+.++. .|++++++++. +++ +++++ ++|+||||.+.+ +++|+++|++||+++|+|++|.......
T Consensus 182 ~~v~~-------~d~~~l~~ai~--~~tv~lV~l-e~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~~-- 246 (445)
T 1qgn_A 182 TVIDP-------ADVGALELALN--QKKVNLFFT-ESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK-- 246 (445)
T ss_dssp EEECS-------SCHHHHHHHHH--HSCEEEEEE-ESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC--
T ss_pred EEeCC-------CCHHHHHHHhc--cCCCCEEEE-eCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence 98865 18899999998 567 77777 899999999876 7788888999999999999997554321
Q ss_pred chhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcCh
Q 015435 230 ADAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDS 308 (407)
Q Consensus 230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (407)
. + .....++++|+||.++..| .++|++ +++ +++.+. +...........+...+..+...++.
T Consensus 247 --~-----~--~~g~Div~~S~sK~~gg~gd~~~G~l--~~~-~~l~~~----l~~~~~~~g~~~~~~~a~~~~~~l~~- 309 (445)
T 1qgn_A 247 --A-----L--ALGADLVLHSATKFLGGHNDVLAGCI--SGP-LKLVSE----IRNLHHILGGALNPNAAYLIIRGMKT- 309 (445)
T ss_dssp --T-----T--TTTCSEEEECTTTTTTCSSSCCCEEE--EEC-HHHHHH----HHHHHHHHCCCCCHHHHHHHHHHGGG-
T ss_pred --c-----c--ccCCEEEEECCcccccccccceEEEE--EEC-HHHHHH----HHHHHHHhCCCCCHHHHHHHHHhHHH-
Confidence 1 0 1234588999999998665 378998 454 444443 33333323233455444444444432
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-cccc-----------------CCceeEEec-CCCHHHHHHhH
Q 015435 309 TMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDW-SHII-----------------KQIGMFTFT-GLNSEQVAFMT 369 (407)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~-----------------~~~~~~~~~-~~~~~~~~~~l 369 (407)
+....+++.++++.+.+.|++.+. + .+.. ..++++.+. +-..+....++
T Consensus 310 ---------l~~r~~~~~~~a~~l~~~L~~~p~---v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l 377 (445)
T 1qgn_A 310 ---------LHLRVQQQNSTALRMAEILEAHPK---VRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFV 377 (445)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHTCTT---EEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHhcCCC---ceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHH
Confidence 233345556677888888887642 2 1111 135554432 21333344443
Q ss_pred hh---ccEEEcCC-----------------------------C--eEEecCCCCCChhHHHHHHHHHHHh
Q 015435 370 KE---YHIYMTSD-----------------------------G--RISMAGLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 370 ~~---~gi~~~~g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 405 (407)
++ .++.++.| + |||++ .|+++.+++.|+++++.
T Consensus 378 ~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG---~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 378 DALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG---VEDFDDLKADILQALDS 444 (445)
T ss_dssp HHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC---SSCHHHHHHHHHHHHHH
T ss_pred HhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHHHhh
Confidence 33 24432221 2 88877 47899999999999875
No 183
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.92 E-value=1.1e-24 Score=205.91 Aligned_cols=303 Identities=13% Similarity=0.059 Sum_probs=197.9
Q ss_pred cchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-hcCCCe
Q 015435 50 VLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR-HYHQLT 128 (407)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~-~~~gd~ 128 (407)
++.+.+++.+.+. ...|.+..+..++++.+++++ +. +++++ |+|||+|+.+++ ... +.+||+
T Consensus 16 ~~~~~~a~~~~~~-----~~~~~~~~~~~~l~~~la~~~-~~-------~~~i~--~~sgt~al~~~l--~~l~~~~gd~ 78 (373)
T 3frk_A 16 EYEIKFKFEEIYK-----RNWFILGDEDKKFEQEFADYC-NV-------NYCIG--CGNGLDALHLIL--KGYDIGFGDE 78 (373)
T ss_dssp HHHHHHHHHHHHH-----HTCCSSSHHHHHHHHHHHHHH-TS-------SEEEE--ESCHHHHHHHHH--HHTTCCTTCE
T ss_pred CHHHHHHHHHHHH-----CCCccCCchHHHHHHHHHHHh-CC-------CeEEE--eCCHHHHHHHHH--HHcCCCCcCE
Confidence 3344444444443 123667788999999999998 53 57888 999999999984 444 678999
Q ss_pred EEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHH
Q 015435 129 IYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMR 208 (407)
Q Consensus 129 Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~ 208 (407)
|+++.|+|..+...++..|.+++.++.+ ++++.+|++++++.+. +++++++ |+||||... ++++|.++|+
T Consensus 79 Vi~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~l~--~~~~~v~----~~n~~G~~~---~l~~i~~l~~ 148 (373)
T 3frk_A 79 VIVPSNTFIATALAVSYTGAKPIFVEPD-IRTYNIDPSLIESAIT--EKTKAII----AVHLYGQPA---DMDEIKRIAK 148 (373)
T ss_dssp EEEETTSCTHHHHHHHHHSCEEEEECEE-TTTTEECGGGTGGGCC--TTEEEEE----EECCTTCCC---CHHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHHcCCEEEEEecc-ccccCcCHHHHHHhcC--CCCeEEE----EECCCcCcc---cHHHHHHHHH
Confidence 9999999999999999999999999994 4568899999999886 4455554 578999965 4778888899
Q ss_pred HcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecC--ccccccCCCcceeEEeecChhhHHHHHHHHhhhh
Q 015435 209 SKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYA--KNMGLYGERVGALSIVCKTEDVASRVESQLKLVI 286 (407)
Q Consensus 209 ~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s--K~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~ 286 (407)
+||+++|+|++|+.+..-+. .. +... ..+++.||+ |.++.+|. .|++ +++++++.+++........
T Consensus 149 ~~~~~li~D~a~~~g~~~~~--~~-----~~~~--~d~~~~S~~~~K~l~~~g~-gg~~--~~~~~~~~~~~~~~~~~g~ 216 (373)
T 3frk_A 149 KYNLKLIEDAAQAHGSLYKG--MK-----VGSL--GDAAGFSFYPAKNLGSLGD-GGAV--VTNDKDLAEKIKALSNYGS 216 (373)
T ss_dssp HHTCEEEEECTTCTTCEETT--EE-----TTSS--SSEEEEECCTTSSSCCSSS-CEEE--EESCHHHHHHHHHHHBTTC
T ss_pred HcCCEEEEECCcccCCEECC--Ee-----cccc--ccEEEEeCcCCCccCccce-eEEE--EeCCHHHHHHHHHHHhcCc
Confidence 99999999999875332110 10 1111 237778877 88864354 6777 6777666555444222111
Q ss_pred hc--------ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-cCCce---e
Q 015435 287 RP--------MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI-IKQIG---M 354 (407)
Q Consensus 287 ~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~---~ 354 (407)
.. .....+.+...+....+ +.+++..++.+++.+++.+.|++++ +.+. .+.+. +
T Consensus 217 ~~~~~~~~~g~~~~~~~~~aa~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~ 282 (373)
T 3frk_A 217 EKKYHHIYKGFNSRLDELQAGFLRVKL----------KYLDKWNEERRKIAQKYIAGINNPN----VIIPVEADYAKHVW 282 (373)
T ss_dssp SBTTBCCSCCCBCCCCHHHHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHCCCTT----EECCCCCTTEECCC
T ss_pred ccCCccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhccCc----eEeccCCCCCceee
Confidence 00 01112232222222111 2244556667778888888887665 2222 11111 1
Q ss_pred --EEecCCCHHHHHHhHhhccEEEcCC-----------------------------C--eEEecC-CCCCChhHHHHHHH
Q 015435 355 --FTFTGLNSEQVAFMTKEYHIYMTSD-----------------------------G--RISMAG-LSSKTVPHLTDAIH 400 (407)
Q Consensus 355 --~~~~~~~~~~~~~~l~~~gi~~~~g-----------------------------g--Ris~~~-~~~e~i~~~~~~l~ 400 (407)
|.....+.+.+.+.|.++||.+.++ + |+++.. .+++|++++++.|+
T Consensus 283 ~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~ 362 (373)
T 3frk_A 283 YTFVIRSEKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKIN 362 (373)
T ss_dssp SSEEEEESSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHH
Confidence 1112236677777777789988732 1 666654 57899999999998
Q ss_pred HHHHh
Q 015435 401 AAVTR 405 (407)
Q Consensus 401 ~~l~~ 405 (407)
+...+
T Consensus 363 ~~~~~ 367 (373)
T 3frk_A 363 AWKLE 367 (373)
T ss_dssp TCC--
T ss_pred HHhhh
Confidence 76543
No 184
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.92 E-value=6.2e-23 Score=196.29 Aligned_cols=257 Identities=15% Similarity=0.120 Sum_probs=174.4
Q ss_pred cccCCCC--CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH---
Q 015435 68 VKEYLPI--VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV--- 142 (407)
Q Consensus 68 ~~~y~~~--~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~--- 142 (407)
.+.|++. ....++++.+++++ +. +++++ |+||++|+.+++ ...+.+||+|+++.|+|......
T Consensus 47 ~~~y~~~~~~~~~~l~~~la~~~-g~-------~~~~~--~~~gt~a~~~al--~~l~~~gd~vi~~~~~~~~~~~~~~~ 114 (412)
T 2cb1_A 47 GYVYARQKDPTAKALEERLKALE-GA-------LEAVV--LASGQAATFAAL--LALLRPGDEVVAAKGLFGQTIGLFGQ 114 (412)
T ss_dssp SCSBTTTCCHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHHH--HTTCCTTCEEEEETTCCHHHHHHHHH
T ss_pred CcCcCCCCChHHHHHHHHHHHHh-CC-------CcEEE--ECCHHHHHHHHH--HHHhCCCCEEEEeCCCchhHHHHHHH
Confidence 4556653 45889999999988 43 57999 999999999994 44477999999999999876654
Q ss_pred -HhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccc
Q 015435 143 -FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ 221 (407)
Q Consensus 143 -~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~ 221 (407)
++..|.+++.++. |++++++.+. ++++++++ ++|+||||.+.+ +++|+++|++||+++|+|++|.
T Consensus 115 ~~~~~g~~~~~~~~--------~~~~l~~~i~--~~~~~v~~-~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~ 180 (412)
T 2cb1_A 115 VLSLMGVTVRYVDP--------EPEAVREALS--AKTRAVFV-ETVANPALLVPD---LEALATLAEEAGVALVVDNTFG 180 (412)
T ss_dssp TTTTTTCEEEEECS--------SHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred HHHHcCCEEEEECC--------CHHHHHHHhc--cCCeEEEE-eCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCc
Confidence 4467999888865 3889999886 55677666 899999999885 8888999999999999999998
Q ss_pred cccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhH-----------------------HHH
Q 015435 222 GFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVA-----------------------SRV 278 (407)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~-----------------------~~~ 278 (407)
.+.... .. ...+..+++.|+||.++.+|.|+|++ ++.+++.. ..+
T Consensus 181 ~~~~~~---~~-------~~~~~di~~~S~~K~~~~~~~~~G~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 248 (412)
T 2cb1_A 181 AAGALC---RP-------LAWGAHVVVESLTKWASGHGSVLGGA--VLSRETELWRNYPQFLQPDLKGQIPWEALRARCF 248 (412)
T ss_dssp TTTTSC---CG-------GGGTCSEEEEETTTTTTCSSCCCCEE--EEECCCSGGGGSGGGGCC-------HHHHGGGHH
T ss_pred cccccC---Cc-------cccCCeEEEECCcccccCCCCcEEEE--EEeccccccccccccccccccccchhhccchHHH
Confidence 763211 11 11246789999999999899999998 45542210 022
Q ss_pred HHHHhhhh-hcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc---------
Q 015435 279 ESQLKLVI-RPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHI--------- 348 (407)
Q Consensus 279 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--------- 348 (407)
...++... .......+......+...++. +....++..++.+++.+.|.+.+. +..+
T Consensus 249 ~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~----------l~~~~~~~~~~~~~l~~~L~~~~~---v~~v~~p~~~~~p 315 (412)
T 2cb1_A 249 PERVRTLGLSLCGMALSPFNAYLLFQGLET----------VALRVARMSETARFLAERLQGHPK---VKALRYPGLPEDP 315 (412)
T ss_dssp HHHHHHHHTTTTCCCCCHHHHHHHHHHGGG----------HHHHHHHHHHHHHHHHHHHHTCTT---CSEEECTTSTTCT
T ss_pred HHHHHHHHHHhcCCCCChHHhHHHHcCCch----------HHHHHHHHHHHHHHHHHHHHcCCC---eeEEECCCCCCCc
Confidence 33333322 111122334333333333321 233444566788888888887632 3311
Q ss_pred ---------cCCceeEEec-CCCHHHHHHhHhhccEEE
Q 015435 349 ---------IKQIGMFTFT-GLNSEQVAFMTKEYHIYM 376 (407)
Q Consensus 349 ---------~~~~~~~~~~-~~~~~~~~~~l~~~gi~~ 376 (407)
...++++.+. + +.+.+...+++.||.+
T Consensus 316 ~~~~~~~~~~~~~~iv~~~~~-~~~~~~~~l~~~~i~~ 352 (412)
T 2cb1_A 316 AHRNARKYLASGGPILTLDLG-DLERASRFLGAIRLLK 352 (412)
T ss_dssp THHHHHHHCSSSCSEEEEECS-SHHHHHHHHHHCSSEE
T ss_pred cHHHHHHhCCCCceEEEEEeC-CHHHHHHHHHhCCeee
Confidence 1234444432 4 6677888888888886
No 185
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.92 E-value=2e-25 Score=209.75 Aligned_cols=278 Identities=14% Similarity=0.097 Sum_probs=185.8
Q ss_pred cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCc-ccHHHHHHHHHHhhcC---CCeEEecCCCCCChHHHHhhcCceeeE
Q 015435 77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSG-TGSLRVGAEFLARHYH---QLTIYIPQPTWGNHPKVFTLAGLSVKT 152 (407)
Q Consensus 77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~-t~a~~~~~~~~~~~~~---gd~Vi~~~p~y~~~~~~~~~~G~~~~~ 152 (407)
..++++.+++++ +.. ++++|++ |+|+ |+++.+++ ...+.+ ||.|+++.++|.. ...++..| +++.
T Consensus 50 ~~~l~~~la~~~-g~~----~~~~v~~--~~g~gt~al~~~~--~~l~~~~~~g~~vi~~~~~~~~-~~~~~~~g-~~~~ 118 (360)
T 1w23_A 50 HEQAQNLLRELL-QIP----NDYQILF--LQGGASLQFTMLP--MNLLTKGTIGNYVLTGSWSEKA-LKEAKLLG-ETHI 118 (360)
T ss_dssp HHHHHHHHHHHH-TCC----TTEEEEE--ESSHHHHHHHHHH--HHHCCTTCEEEEEECSHHHHHH-HHHHHTTS-EEEE
T ss_pred HHHHHHHHHHHh-CCC----CCceEEE--ECCcchHHHHHHH--HHhcCCCCcccEEEecchhHHH-HHHHHHhC-CeEE
Confidence 567788888877 431 2368999 9999 99999984 444544 5667777666653 34457789 9999
Q ss_pred EEeecCCCCCcChhhHHH-HHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435 153 YRYYDPATRGLNFQGLLE-DLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD 231 (407)
Q Consensus 153 v~~~~~~~~~~d~~~l~~-~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~ 231 (407)
++++ ++++.+|++++++ +++ ++++++++ ++|+||||.+++ ++ +++||+++|+|++|..+... . +
T Consensus 119 v~~~-~~~~~~d~~~l~~~~i~--~~~k~v~~-~~~~nptG~~~~--~i------~~~~~~~li~D~a~~~~~~~-~--~ 183 (360)
T 1w23_A 119 AAST-KANSYQSIPDFSEFQLN--ENDAYLHI-TSNNTIYGTQYQ--NF------PEINHAPLIADMSSDILSRP-L--K 183 (360)
T ss_dssp EEEC-GGGTSCSCCCGGGCCCC--TTEEEEEE-ESEETTTTEECS--SC------CCCCSSCEEEECTTTTTSSC-C--C
T ss_pred eecc-cccCcCCccchHhhccC--CCCCEEEE-eCCCCCcceecc--cc------cccCCceEEEechhhcCCCC-c--C
Confidence 9984 3223478899988 775 55677666 899999999987 32 33899999999999766532 1 1
Q ss_pred hHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhh------------hcccCCCChhHHH
Q 015435 232 AQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVI------------RPMYSSPPIHGAS 299 (407)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 299 (407)
+ .. . .++++|+||.++++| +||+ +++ +.+.+.+.... .....+++...+.
T Consensus 184 ---~---~~-~--di~~~s~sK~~~~~G--~G~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (360)
T 1w23_A 184 ---V---NQ-F--GMIYAGAQKNLGPSG--VTVV--IVK-----KDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIY 245 (360)
T ss_dssp ---G---GG-C--SEEEEETTTTTSCTT--CEEE--EEE-----HHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHH
T ss_pred ---c---cc-C--CEEEEEcccccCCCC--cEEE--EEc-----HHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHH
Confidence 1 11 1 378999999999666 8998 566 33333332211 1112345555555
Q ss_pred HHHHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-cC--CceeEEecCCC----HHHHHHhHhh
Q 015435 300 IVATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTPGDWSHI-IK--QIGMFTFTGLN----SEQVAFMTKE 371 (407)
Q Consensus 300 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~--~~~~~~~~~~~----~~~~~~~l~~ 371 (407)
++..+++... .. .+++.+++++++++++.+.|++.+. .+... .+ .++++.|+.+. .+.+.+.|.+
T Consensus 246 ~~~~al~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 318 (360)
T 1w23_A 246 MLRNVLDWIK-----DLGGAEAIAKQNEEKAKIIYDTIDESNG--FYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKE 318 (360)
T ss_dssp HHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHHHTTTT--SSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HhcCHHHHHHHHHHHHHHHHHHHHHccC--cccccCCchhccCcEEEEEcCCCccHHHHHHHHHH
Confidence 5555554221 01 3677888999999999999988752 01322 12 34656666553 2233344566
Q ss_pred ccEEEcCC----C--eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435 372 YHIYMTSD----G--RISMAG-LSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 372 ~gi~~~~g----g--Ris~~~-~~~e~i~~~~~~l~~~l~~ 405 (407)
+||.+.++ + ||+++. .+++++++++++|++++++
T Consensus 319 ~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 319 QGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp TTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 89999886 2 999874 3778999999999998764
No 186
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.92 E-value=7.2e-25 Score=206.17 Aligned_cols=310 Identities=15% Similarity=0.132 Sum_probs=193.6
Q ss_pred cccchhHHHHHHHHhccccc------cccCCCCC--CcHHHHHHHHHHHhCCCCCCCCCC-ce-EEeecCCcccHHHHHH
Q 015435 48 PLVLNVVRKAEQLLVNDQSR------VKEYLPIV--GLVDFNKLSAKLILGADSPAIKDN-RV-TTVQCLSGTGSLRVGA 117 (407)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~------~~~y~~~~--g~~~l~~~~a~~~~~~~~~~~~~~-~i-~~~~t~g~t~a~~~~~ 117 (407)
+.|+.+++++.+.+...... ..+|.+.. -..++++.+++++ +. +++ ++ ++ |+|+|+++.+++
T Consensus 14 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~-----~~~~~~i~~--t~g~t~a~~~~~ 85 (362)
T 2c0r_A 14 ALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALL-GN-----PTGYKVLFI--QGGASTQFAMIP 85 (362)
T ss_dssp CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHT-TC-----CSSEEEEEE--SSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHh-CC-----CCCcEEEEE--CCCchHHHHHHH
Confidence 55666776666655310000 12222211 1344555555555 32 222 54 67 899999999994
Q ss_pred HHHHhhcCCCeEEecCCCCCCh--HHHHhhcCceeeEEEeecCCCC--CcChhhHHHHHHcCCCCcEEEEecCCCCCCCC
Q 015435 118 EFLARHYHQLTIYIPQPTWGNH--PKVFTLAGLSVKTYRYYDPATR--GLNFQGLLEDLRAAPSGAIVLLHACAHNPTGV 193 (407)
Q Consensus 118 ~~~~~~~~gd~Vi~~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~--~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~ 193 (407)
...+.+||+|+++++.+..+ ...++..| +++.++...+.++ .+|.++++ ++ ++++++++ ++|+||||+
T Consensus 86 --~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~--~~t~~v~~-~~~~n~tG~ 157 (362)
T 2c0r_A 86 --MNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ--DNAAYLHL-TSNETIEGA 157 (362)
T ss_dssp --HHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC--TTEEEEEE-ESEETTTTE
T ss_pred --HhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cC--CCcCEEEE-eCCcCccce
Confidence 44578999999887664443 35667789 9999998411223 34666554 43 55677666 889999999
Q ss_pred CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChh
Q 015435 194 DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTED 273 (407)
Q Consensus 194 ~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~ 273 (407)
+++ ++++| +|+++|+|++|..+... . + +.. . .+++.|+||.+|++| +||+ +++ ++
T Consensus 158 ~~~--~l~~i------~~~~vivD~a~~~~~~~-~--~------~~~-~--d~~~~s~~K~~g~~G--~G~l--~~~-~~ 212 (362)
T 2c0r_A 158 QFK--AFPDT------GSVPLIGDMSSDILSRP-F--D------LNQ-F--GLVYAGAQKNLGPSG--VTVV--IVR-ED 212 (362)
T ss_dssp ECS--SCCCC------TTSCEEEECTTTTTSSC-C--C------GGG-C--SEEEEETTTTTCCSS--CEEE--EEE-GG
T ss_pred ecc--ccccc------CCCEEEEEChhhccCCc-c--c------hhH-C--cEEEEeccccccCcC--cEEE--EEc-HH
Confidence 755 45555 89999999999755431 1 1 111 1 477889999999888 8999 455 33
Q ss_pred hHHHHHHHHhh--------hhhcccCCCChhHHHHHHHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015435 274 VASRVESQLKL--------VIRPMYSSPPIHGASIVATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTPGD 344 (407)
Q Consensus 274 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 344 (407)
+.+.+...... .......+++...+.++..+++... .. .+++.+++++++++++.+.|++.+.
T Consensus 213 ~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~--- 284 (362)
T 2c0r_A 213 LVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIE-----ERGGLEGVQQANRKKASLIYDAIDQSGG--- 284 (362)
T ss_dssp GSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHHHTSTT---
T ss_pred HHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHHHHHHHHHcCC---
Confidence 32222110000 0112234677777887777775321 11 4678889999999999999998761
Q ss_pred c-cccc---CCceeEEecCC----CHHHHHHhHhhccEEEcCC----C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 345 W-SHII---KQIGMFTFTGL----NSEQVAFMTKEYHIYMTSD----G--RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 345 ~-~~~~---~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~g----g--Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
+ .... ..++.+.++.+ +.+.+.+.|+++||.+.+| + |||++. .++++++++++.|+++++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 285 FYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp SSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCChHHcCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 2 3221 11223334433 2344555567789988775 2 999874 36799999999999988765
No 187
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.91 E-value=2.8e-23 Score=199.01 Aligned_cols=321 Identities=15% Similarity=0.142 Sum_probs=193.8
Q ss_pred CeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc------CCCCCCcHHHHH----HHHHHHhCCCCCCCCCCce
Q 015435 32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE------YLPIVGLVDFNK----LSAKLILGADSPAIKDNRV 101 (407)
Q Consensus 32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------y~~~~g~~~l~~----~~a~~~~~~~~~~~~~~~i 101 (407)
+.|+|..+. . +.++.+++++.+.+. ...... |.......++++ .+++++ +. ++++|
T Consensus 26 ~~i~l~~~~-----~-~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~-----~~~~i 91 (417)
T 3n0l_A 26 EGLEMIASE-----N-FTLPEVMEVMGSILT--NKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLF-NC-----KFANV 91 (417)
T ss_dssp HSEECCTTC-----C-CCCHHHHHHHTBGGG--GCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-TC-----SEEEC
T ss_pred cCeeeeccc-----C-CCCHHHHHHHhhhhh--ccccccCCCccccccchHHHHHHHHHHHHHHHHh-CC-----CCcce
Confidence 567775442 2 446566666555552 111112 222223344444 566655 42 23557
Q ss_pred EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH---HHhhcC--ceeeEEEeecCCCCCcChhhHHHHHHcCC
Q 015435 102 TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK---VFTLAG--LSVKTYRYYDPATRGLNFQGLLEDLRAAP 176 (407)
Q Consensus 102 ~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~---~~~~~G--~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 176 (407)
++ ++| ++++.+++ ...+.+||+|++++|+|..+.. .+...| ..++.++. +.++.+|++++++.+.+ +
T Consensus 92 ~~--~sG-t~a~~~~~--~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~d~~~l~~~i~~-~ 163 (417)
T 3n0l_A 92 QP--NSG-SQANQGVY--AALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGV--ELDGRIDYEKVREIAKK-E 163 (417)
T ss_dssp CC--SSH-HHHHHHHH--HHHSCTTCEEEEECC----------------CCSEEEEECC--CTTSSCCHHHHHHHHHH-H
T ss_pred Ee--ccH-HHHHHHHH--HHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccC--CCCCCcCHHHHHHHHHh-c
Confidence 66 777 89999985 3447899999999999987655 333434 44555555 35567999999999973 2
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc-ccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435 177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY-QGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM 255 (407)
Q Consensus 177 ~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 255 (407)
+++++++ ++|+| |++.+ +++|+++|++||++||+|+++ .++.+.+.... ......+++.|+||.+
T Consensus 164 ~~~~v~~-~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--------~~~~~di~~~s~sK~l 229 (417)
T 3n0l_A 164 KPKLIVC-GASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS--------PFPYAHVVSSTTHKTL 229 (417)
T ss_dssp CCSEEEE-CCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--------CTTTCSEEEEESSTTT
T ss_pred CCeEEEE-CCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCCC--------ccccceEEEeeCcccc
Confidence 4667665 66676 77776 888899999999999999995 33332211000 0012358899999987
Q ss_pred cccCCCcceeEEeecChhhHHHHHHHHhhhhhccc-CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435 256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMY-SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD 334 (407)
Q Consensus 256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (407)
+|+|.||+ +++++++.+.+.. ...... .+++...+.++..++... +.+.+++.++++.++++++.+
T Consensus 230 --~g~~~G~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~aa~~~a~~~~-----~~~~~~~~~~~~~~~~~~l~~ 296 (417)
T 3n0l_A 230 --RGPRGGII--MTNDEELAKKINS----AIFPGIQGGPLMHVIAAKAVGFKFN-----LSDEWKVYAKQVRTNAQVLAN 296 (417)
T ss_dssp --CSCSCEEE--EESCHHHHHHHHH----HHTTTTCSSCCHHHHHHHHHHHHHH-----TSHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCeeEE--EECCHHHHHHHhh----hhCCcccCCcHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHH
Confidence 68899998 6776665555433 222222 233444444443333321 113456778888899999999
Q ss_pred HHHhcCCCCCccccc-CCceeEEecC-----CCHHHHHHhHhhccEEEcCC-------------C-eEEecC-----CCC
Q 015435 335 ALSARGTPGDWSHII-KQIGMFTFTG-----LNSEQVAFMTKEYHIYMTSD-------------G-RISMAG-----LSS 389 (407)
Q Consensus 335 ~l~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~l~~~gi~~~~g-------------g-Ris~~~-----~~~ 389 (407)
.|++.+ +.+.. +..+.+.|+. ++.+.+.++|+++||.+.++ + |+++.. +++
T Consensus 297 ~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 372 (417)
T 3n0l_A 297 VLMDRK----FKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKE 372 (417)
T ss_dssp HHHHTT----CEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCH
T ss_pred HHHhCC----ceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCH
Confidence 998866 55443 2233445542 36777888888899998742 1 666542 357
Q ss_pred CChhHHHHHHHHHHHh
Q 015435 390 KTVPHLTDAIHAAVTR 405 (407)
Q Consensus 390 e~i~~~~~~l~~~l~~ 405 (407)
+++++++++|++++++
T Consensus 373 ~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 373 KEMEIVSNYIADILDD 388 (417)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998864
No 188
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.86 E-value=1.4e-26 Score=222.66 Aligned_cols=336 Identities=13% Similarity=0.059 Sum_probs=213.9
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecC
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCL 107 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~ 107 (407)
..++++|||..|....+.| ..++.+++++.+++. ......| +.....++.+.+++++.+ .+.+++ ++
T Consensus 97 ~dG~~yiD~~~~~~~~~lG-h~~p~V~~Av~~q~~--~~~~~~~-~~~~~~~Lae~L~~~~p~-------~~~v~~--~n 163 (465)
T 2yky_A 97 VDGHAYVNFLGEYTAGLFG-HSHPVIRAAVERALA--VGLNLST-QTENEALFAEAVCDRFPS-------IDLVRF--TN 163 (465)
Confidence 4578999999998755566 557788888877775 2222334 445567788888887621 278999 99
Q ss_pred CcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh----hcCc--eeeEEEeecCCCCCcChhhHHHHHHcC-CCCcE
Q 015435 108 SGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT----LAGL--SVKTYRYYDPATRGLNFQGLLEDLRAA-PSGAI 180 (407)
Q Consensus 108 g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~----~~G~--~~~~v~~~~~~~~~~d~~~l~~~i~~~-~~~~~ 180 (407)
||++|++.++++......+++|++.+++|.++..... ..|+ .++.+|. .|++++++.+.+. +++++
T Consensus 164 SGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~aa 236 (465)
T 2yky_A 164 SGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCAA 236 (465)
Confidence 9999999997665444566899999999987665433 2233 2233322 3778888888642 24556
Q ss_pred EEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccC
Q 015435 181 VLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYG 259 (407)
Q Consensus 181 v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 259 (407)
+++ ...+++||.+ .+.+.+++|+++|++||++||+||+|. +..+ .......+ +...-+.+|||.++. |
T Consensus 237 vi~-epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g----~~~a~~~~----gv~pDi~t~sK~lg~-G 305 (465)
T 2yky_A 237 ILV-EPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLS----GGGAQEML----GISADLTTLGKYIGG-G 305 (465)
Confidence 555 3335569965 568899999999999999999999999 6322 11122111 111224489999995 9
Q ss_pred CCcceeEEeecChhhHHHHHHH-HhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015435 260 ERVGALSIVCKTEDVASRVESQ-LKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA 338 (407)
Q Consensus 260 ~r~G~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 338 (407)
+|+||+ +++ +++.+.+... ........+++.+++++.++.+.|+... + +...++++++.+++.+.|++
T Consensus 306 ~piG~v--~~~-~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~------~--~~~~~~~~~~~~~l~~~L~~ 374 (465)
T 2yky_A 306 MSFGAF--GGR-RDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIY------T--RQAASDLSASGDRFRANLNR 374 (465)
Confidence 999998 455 4444433221 0001223445778888888877776431 1 23456666677777777765
Q ss_pred cCCCCCcccccCCceeEEecCCCH-----------------HHHHHhHhhccEEEcCCC--eEEecCCCCCChhHHHHHH
Q 015435 339 RGTPGDWSHIIKQIGMFTFTGLNS-----------------EQVAFMTKEYHIYMTSDG--RISMAGLSSKTVPHLTDAI 399 (407)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~l~~~gi~~~~gg--Ris~~~~~~e~i~~~~~~l 399 (407)
+.....+....+..|.+.++.+.. ..+...+.++||.+.|++ .+++. .+++++++++++|
T Consensus 375 ~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~~~s~~-~t~edid~~l~~l 453 (465)
T 2yky_A 375 IAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMYALSLE-IADAGRDAFAEAL 453 (465)
Confidence 421101222222334444443311 123333445899999876 35665 4899999999999
Q ss_pred HHHHHhh
Q 015435 400 HAAVTRM 406 (407)
Q Consensus 400 ~~~l~~~ 406 (407)
+++++++
T Consensus 454 ~~~l~~~ 460 (465)
T 2yky_A 454 ADFIGEQ 460 (465)
Confidence 9988754
No 189
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.91 E-value=3.5e-24 Score=208.82 Aligned_cols=334 Identities=17% Similarity=0.167 Sum_probs=204.0
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc------CCCCCCcHHHHHHHHHHHhCCCCCCCCC--CceE
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE------YLPIVGLVDFNKLSAKLILGADSPAIKD--NRVT 102 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------y~~~~g~~~l~~~~a~~~~~~~~~~~~~--~~i~ 102 (407)
.+.|+|..|. . +.++.+.+++.+.+. +. ...+ |....+.+++++.+++++....+...++ .+|+
T Consensus 44 ~~~i~L~a~e-----~-~~~~~V~eA~~~~l~-~~-~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~ 115 (483)
T 1rv3_A 44 RVGLELIASE-----N-FASRAVLEALGSCLN-NK-YSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQ 115 (483)
T ss_dssp HSSEECCTTC-----C-CCCHHHHHHHTSGGG-TC-CCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECC
T ss_pred hcCeEEEcCC-----C-CCCHHHHHHHHHHHh-cc-CcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEE
Confidence 4688887553 2 455566655555553 11 1112 3333345566644444442222222111 2366
Q ss_pred EeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH--------HhhcCceeeEEEee-cCCCCCcChhhHHHHHH
Q 015435 103 TVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV--------FTLAGLSVKTYRYY-DPATRGLNFQGLLEDLR 173 (407)
Q Consensus 103 ~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~--------~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~ 173 (407)
+ ++|+ +++.+++ ...+.+||+|++++|.|.++... +...|..++.+++. +++++.+|++++++.+.
T Consensus 116 ~--~sGs-~an~~~~--~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~ 190 (483)
T 1rv3_A 116 P--YSGS-PANFAVY--TALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENAR 190 (483)
T ss_dssp C--SSHH-HHHHHHH--HHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHH
T ss_pred E--CCcH-HHHHHHH--HHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHh
Confidence 6 7776 8887763 45588999999999998877643 33445334444442 34567899999999997
Q ss_pred cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccc-cccCCCCCchhHHHHHHHHcCCcEEEEEecC
Q 015435 174 AAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ-GFASGSLDADAQSVRMFVADGGECLVAQSYA 252 (407)
Q Consensus 174 ~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 252 (407)
+ +++++|++ +++||+ .+++ +++|+++|+++|++||+|++|. ++...+... .+ + . ...+++.|++
T Consensus 191 ~-~~tklIi~--~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~--~p---~-~--~~div~~s~~ 255 (483)
T 1rv3_A 191 L-FHPKLIIA--GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVP--SP---F-E--HCHVVTTTTH 255 (483)
T ss_dssp H-HCCSEEEE--CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSC--CG---G-G--TCSEEEEESS
T ss_pred h-cCCcEEEE--eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCC--CC---C-C--CCcEEEecCc
Confidence 3 24566666 678888 6665 7888899999999999999975 333222110 11 1 1 2347889999
Q ss_pred ccccccCCCcceeEEeecChhhH---H-------HHHHHHhhhhhcc-cCCCChhHHHHHHHHhcChhhHHhHHHHHHHH
Q 015435 253 KNMGLYGERVGALSIVCKTEDVA---S-------RVESQLKLVIRPM-YSSPPIHGASIVATILKDSTMYKEWTLELKAM 321 (407)
Q Consensus 253 K~~~~~G~r~G~~~~v~~~~~~~---~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 321 (407)
|.+ +|+|.||+ +++++... . .+...+....... ..+++...+.+...+++... ...+++.
T Consensus 256 K~l--~GprgG~i--~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~-----~~~~~~~ 326 (483)
T 1rv3_A 256 KTL--RGCRAGMI--FYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAM-----TPEFKEY 326 (483)
T ss_dssp GGG--CCCSCEEE--EEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHT-----SHHHHHH
T ss_pred ccC--CCCCceEE--EEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHh-----ChhHHHH
Confidence 986 58899999 57654110 0 1122222221111 22344444444333443211 1235677
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccccCC-ceeEEec-----CCCHHHHHHhHhhccEEEc----CC--------C-eE
Q 015435 322 ADRIISMRQQLFDALSARGTPGDWSHIIKQ-IGMFTFT-----GLNSEQVAFMTKEYHIYMT----SD--------G-RI 382 (407)
Q Consensus 322 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~l~~~gi~~~----~g--------g-Ri 382 (407)
++++.++++++.+.|.+.| +.+..+. .+.+.|+ +++.+.+.++|++.||.+. || + ||
T Consensus 327 ~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRi 402 (483)
T 1rv3_A 327 QRQVVANCRALSAALVELG----YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRL 402 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEE
T ss_pred HHHHHHHHHHHHHHHHhcC----CEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEe
Confidence 8889999999999999887 5655442 2344554 3467777888888999998 64 1 99
Q ss_pred EecCC-C----CCChhHHHHHHHHHHHh
Q 015435 383 SMAGL-S----SKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 383 s~~~~-~----~e~i~~~~~~l~~~l~~ 405 (407)
+++.. + ++++++++++|+++++.
T Consensus 403 s~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 403 GTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp ECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 88632 3 79999999999998764
No 190
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.91 E-value=3e-23 Score=197.40 Aligned_cols=301 Identities=11% Similarity=0.028 Sum_probs=196.5
Q ss_pred cchhHHHHHHHHhccccccccCCCCCC--cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-hcCC
Q 015435 50 VLNVVRKAEQLLVNDQSRVKEYLPIVG--LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR-HYHQ 126 (407)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~y~~~~g--~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~-~~~g 126 (407)
++++.+++.+.+. . +|.+..| ..++++++++++ +. +++++ |+|+++++.+++ ... +.+|
T Consensus 11 ~~~v~~a~~~~~~--~----~~~~~~g~~~~~l~~~la~~~-~~-------~~v~~--~~ggt~al~~~~--~~l~~~~g 72 (394)
T 1o69_A 11 GGNELKYIEEVFK--S----NYIAPLGEFVNRFEQSVKDYS-KS-------ENALA--LNSATAALHLAL--RVAGVKQD 72 (394)
T ss_dssp -CCHHHHHHHHHH--H----TTTSCTTHHHHHHHHHHHHHH-CC-------SEEEE--ESCHHHHHHHHH--HHTTCCTT
T ss_pred CHHHHHHHHHHHH--c----CCccCCChHHHHHHHHHHHHh-CC-------CcEEE--eCCHHHHHHHHH--HHcCCCCC
Confidence 4455555555554 1 3656567 899999999998 53 68999 999999999994 433 5789
Q ss_pred CeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC-CCcEEEEecCCCCCCCCCCCHHHHHHHHH
Q 015435 127 LTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP-SGAIVLLHACAHNPTGVDPTLEQWEQIRQ 205 (407)
Q Consensus 127 d~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~-~~~~v~i~~~p~NPtG~~~~~~~l~~i~~ 205 (407)
|+|+++.|+|..+...++..|.+++.++.+ .++.+|++++++.+.+.+ +++++++ + ||||. ..++++|.+
T Consensus 73 d~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~v~~-~---~~~G~---~~~l~~i~~ 143 (394)
T 1o69_A 73 DIVLASSFTFIASVAPICYLKAKPVFIDCD--ETYNIDVDLLKLAIKECEKKPKALIL-T---HLYGN---AAKMDEIVE 143 (394)
T ss_dssp CEEEEESSSCGGGTHHHHHTTCEEEEECBC--TTSSBCHHHHHHHHHHCSSCCCEEEE-E---CGGGC---CCCHHHHHH
T ss_pred CEEEECCCccHHHHHHHHHcCCEEEEEEeC--CCCCcCHHHHHHHHhcccCCceEEEE-E---CCCCC---hhhHHHHHH
Confidence 999999999999999999999999999983 457799999999998422 4677777 3 38996 457888899
Q ss_pred HHHHcCceeeeccccc-cccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhh
Q 015435 206 LMRSKGLLPFFDSAYQ-GFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKL 284 (407)
Q Consensus 206 ~~~~~~~~li~D~~y~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~ 284 (407)
+|+++|+++|+|++|+ ++.+.+. .. ....+ +.+.||||..+++|.|+||+ +++++++.+.+......
T Consensus 144 l~~~~~~~li~Dea~~~g~~~~~~--~~------~~~~~--~~~~s~s~~K~l~~~~~G~~--~~~~~~l~~~l~~~~~~ 211 (394)
T 1o69_A 144 ICKENDIVLIEDAAEALGSFYKNK--AL------GTFGE--FGVYSYNGNKIITTSGGGML--IGKNKEKIEKARFYSTQ 211 (394)
T ss_dssp HHHHTTCEEEEECTTCTTCEETTE--ET------TSSSS--EEEEECCTTSSSCCSSCEEE--EESCHHHHHHHHHHTBT
T ss_pred HHHHcCCEEEEECcCcccceeCCc--cc------ccccC--cEEEEEeCCccCCCCCceEE--EECCHHHHHHHHHHHHh
Confidence 9999999999999998 5554321 10 01112 45555644434457799999 67666665555442111
Q ss_pred hhhcc-cC---------CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC----
Q 015435 285 VIRPM-YS---------SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK---- 350 (407)
Q Consensus 285 ~~~~~-~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---- 350 (407)
..... .. ..+.....++...++ .+++..++++++++++.+.|++. . .+..+
T Consensus 212 ~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~----------~l~~~~~~~~~~~~~l~~~L~~~-~----~~~~~~~~~ 276 (394)
T 1o69_A 212 ARENCLHYEHLDYGYNYRLSNVLGAIGVAQME----------VLEQRVLKKREIYEWYKEFLGEY-F----SFLDELENS 276 (394)
T ss_dssp CCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHT----------THHHHHHHHHHHHHHHHHHHTTT-E----ECCCCCTTE
T ss_pred ccccCccccccccCcccCcCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhccc-c----cccCCCCCC
Confidence 10000 00 012222222222222 24456677888889999988764 2 21111
Q ss_pred Ccee--E-EecC-----------------------CCHHHHHHhHhhccEEEcCCC------------------------
Q 015435 351 QIGM--F-TFTG-----------------------LNSEQVAFMTKEYHIYMTSDG------------------------ 380 (407)
Q Consensus 351 ~~~~--~-~~~~-----------------------~~~~~~~~~l~~~gi~~~~gg------------------------ 380 (407)
..++ + ..++ .+.+.+.+.|.++||.+.++.
T Consensus 277 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 356 (394)
T 1o69_A 277 RSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFF 356 (394)
T ss_dssp ECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHH
T ss_pred cceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHh
Confidence 1232 1 1222 134556666677899988761
Q ss_pred -----eEEecCCCCCChhHHHHHHHHHHH
Q 015435 381 -----RISMAGLSSKTVPHLTDAIHAAVT 404 (407)
Q Consensus 381 -----Ris~~~~~~e~i~~~~~~l~~~l~ 404 (407)
|.+....+++|++++++.|+++++
T Consensus 357 ~~~~~~~~~~~~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 357 QKGICLPSGTAMSKDDVYEISKLILKSIK 385 (394)
T ss_dssp HHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred cCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence 111112578999999999998764
No 191
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.91 E-value=8.4e-24 Score=205.63 Aligned_cols=295 Identities=16% Similarity=0.094 Sum_probs=193.0
Q ss_pred cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCC---CeEEecCCCCCChHH----HHhhcCce
Q 015435 77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQ---LTIYIPQPTWGNHPK----VFTLAGLS 149 (407)
Q Consensus 77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~g---d~Vi~~~p~y~~~~~----~~~~~G~~ 149 (407)
..++++.+++++ +. ++++|++ |+|+|+++.+++ ...+.+| ++|+++.|+|++... .++..|++
T Consensus 113 ~~~l~~~la~~~-g~-----~~~~v~~--t~g~t~al~~~~--~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~ 182 (465)
T 3e9k_A 113 DESIVGLMKDIV-GA-----NEKEIAL--MNALTVNLHLLM--LSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLN 182 (465)
T ss_dssp THHHHGGGHHHH-TC-----CGGGEEE--CSCHHHHHHHHH--HHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHc-CC-----CcCCEEE--ECCHHHHHHHHH--HHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCc
Confidence 467888899987 43 2479999 999999999984 3335554 459999999987544 55678888
Q ss_pred eeE-----EEeecCCCCCcChhhHHHHHHcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccc
Q 015435 150 VKT-----YRYYDPATRGLNFQGLLEDLRAA-PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGF 223 (407)
Q Consensus 150 ~~~-----v~~~~~~~~~~d~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~ 223 (407)
++. ++. +.++.+|++++++++.+. ++++++++ ++|+||||.+++ +++|.++|++||+++|+|++++..
T Consensus 183 ~~~~~v~~~~~--~~~~~~d~~~l~~~i~~~~~~~~lv~~-~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g 256 (465)
T 3e9k_A 183 IEESMRMIKPR--EGEETLRIEDILEVIEKEGDSIAVILF-SGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVG 256 (465)
T ss_dssp HHHHEEEECCC--TTCSSCCHHHHHHHHHHHGGGEEEEEE-ESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTT
T ss_pred ceeeeEEEecC--CCCCccCHHHHHHHHHhcCCCeEEEEE-eCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhcC
Confidence 642 233 345678999999999743 34556655 999999999987 677888899999999999998643
Q ss_pred cCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhh---------h---------
Q 015435 224 ASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKL---------V--------- 285 (407)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~---------~--------- 285 (407)
... . .+.. .+..++++|++|.++....++|++ ++. +++.+.+...+.. +
T Consensus 257 ~~~-~-----~~~~----~~~D~~~~s~~K~l~~gp~~~g~l--~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 323 (465)
T 3e9k_A 257 NVE-L-----YLHD----WGVDFACWCSYKYLNAGAGGIAGA--FIH-EKHAHTIKPALVGWFGHELSTRFKMDNKLQLI 323 (465)
T ss_dssp TSC-C-----CHHH----HTCCEEEECSSSTTCCCTTCCCEE--EEC-GGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBC
T ss_pred CcC-C-----chhh----cCCCEEEECcccccccCCCceEEE--EEc-HHHHhhcCCcccCccCCCCCcccccCCCcCcC
Confidence 321 1 1111 234588899999994222368888 454 4433222111100 0
Q ss_pred ---hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------CCcccccCC----
Q 015435 286 ---IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTP-------GDWSHIIKQ---- 351 (407)
Q Consensus 286 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~~~~~---- 351 (407)
.+....+++..++.++..+++... . ..+++++++++++++++.+.|++.-.+ .++.+..|.
T Consensus 324 ~~~~~~~~gt~~~~~~~a~~aal~~~~---~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~ 398 (465)
T 3e9k_A 324 PGVCGFRISNPPILLVCSLHASLEIFK---Q--ATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEE 398 (465)
T ss_dssp SSGGGGCCSCCCHHHHHHHHHHHHHHH---H--HCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGG
T ss_pred CChHHhccCCccHHHHHHHHHHHHHHH---H--cCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhh
Confidence 011112555555666555554221 0 126788899999999999999873100 016665553
Q ss_pred -ceeEEec-CCCHHHHHHhHhhccEEEcCC--C--eEEe--cCCCCCChhHHHHHHHHHHHh
Q 015435 352 -IGMFTFT-GLNSEQVAFMTKEYHIYMTSD--G--RISM--AGLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 352 -~~~~~~~-~~~~~~~~~~l~~~gi~~~~g--g--Ris~--~~~~~e~i~~~~~~l~~~l~~ 405 (407)
++++.|. +.+.+.+.+.|.++||.+... + ||++ ...++++++++++.|++++++
T Consensus 399 ~g~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 399 RGCQLTITFSVPNKDVFQELEKRGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp BCSCEEEEECCTTCCHHHHHHTTTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred cccEEEEEecCCHHHHHHHHHHCCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 4444432 333444555556679988654 2 9987 235789999999999998864
No 192
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.91 E-value=7.8e-23 Score=194.17 Aligned_cols=212 Identities=14% Similarity=0.116 Sum_probs=151.8
Q ss_pred CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH----HHhhcCce
Q 015435 74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK----VFTLAGLS 149 (407)
Q Consensus 74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~----~~~~~G~~ 149 (407)
.....++|+++++++ +. ++.++ ++||++++.++++ .+.+||+|+++.|+|.+... .++..|.+
T Consensus 54 ~~~~~~lr~~la~~~-g~-------~~~i~--~~sGt~a~~~al~---~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~ 120 (393)
T 1n8p_A 54 NPNRENLERAVAALE-NA-------QYGLA--FSSGSATTATILQ---SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120 (393)
T ss_dssp CHHHHHHHHHHHHHT-TC-------SEEEE--ESCHHHHHHHHHH---TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSC
T ss_pred ChhHHHHHHHHHHHh-CC-------CcEEE--ECChHHHHHHHHH---HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcE
Confidence 456789999999988 43 34556 6666999999953 57799999999999985544 45678999
Q ss_pred eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc----CceeeeccccccccC
Q 015435 150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK----GLLPFFDSAYQGFAS 225 (407)
Q Consensus 150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~----~~~li~D~~y~~~~~ 225 (407)
++.+|.+ | +++++++. ++++++++ ++|+||||.+++ +++|+++|++| |+++|+|++|..+..
T Consensus 121 v~~v~~~-------d-~~l~~~i~--~~t~lv~~-~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~ 186 (393)
T 1n8p_A 121 TSFTNDL-------L-NDLPQLIK--ENTKLVWI-ETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYI 186 (393)
T ss_dssp CEEESSH-------H-HHHHHHSC--SSEEEEEE-CSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHH
T ss_pred EEEeCCC-------h-HHHHHhcc--cCceEEEE-ECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCcccccc
Confidence 9988762 6 88888886 55677666 999999999986 78888889999 999999999987765
Q ss_pred CCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc-ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHH
Q 015435 226 GSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATI 304 (407)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (407)
.. . .. .+..+++.|+||.++.+|+|+ ||+ +++++++.+.+.. .........+...+.++...
T Consensus 187 ~~----~------~~-~~~di~~~S~sK~~g~~G~rigG~~--~~~~~~~~~~l~~----~~~~~g~~~~~~~~~~~~~~ 249 (393)
T 1n8p_A 187 SN----P------LN-FGADIVVHSATKYINGHSDVVLGVL--ATNNKPLYERLQF----LQNAIGAIPSPFDAWLTHRG 249 (393)
T ss_dssp CC----G------GG-GTCSEEEEETTTTTTCSSCCCCEEE--EESCHHHHHHHHH----HHHHHCCCCCHHHHHHHHHH
T ss_pred CC----H------HH-cCCeEEEEECcccccCCCCceeEEE--EeCCHHHHHHHHH----HHHhcCCCCCHHHHHHHHhc
Confidence 31 1 11 146799999999999999999 887 5655655554433 32222334455555555545
Q ss_pred hcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435 305 LKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR 339 (407)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 339 (407)
++.. ....++..++.+.+.+.|++.
T Consensus 250 l~~~----------~~~~~~~~~~~~~l~~~L~~~ 274 (393)
T 1n8p_A 250 LKTL----------HLRVRQAALSANKIAEFLAAD 274 (393)
T ss_dssp HTTH----------HHHHHHHHHHHHHHHHHHTSC
T ss_pred cchH----------HHHHHHHHHHHHHHHHHHHhC
Confidence 5432 233344556666777777654
No 193
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.91 E-value=2e-23 Score=200.47 Aligned_cols=267 Identities=18% Similarity=0.193 Sum_probs=168.9
Q ss_pred EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC---hHHHHhhcCc--eeeEEEeecCCCCCcChhhHHHHHHcCC
Q 015435 102 TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN---HPKVFTLAGL--SVKTYRYYDPATRGLNFQGLLEDLRAAP 176 (407)
Q Consensus 102 ~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~---~~~~~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 176 (407)
++ ++||++++..++ ...+.+||+|++++|+|.. +.......|. +++.++. +++++.+|++++++.+.+ +
T Consensus 98 v~--~~~Gs~a~~~al--~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~i~~-~ 171 (425)
T 3ecd_A 98 VQ--PHSGAQANGAVM--LALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGV-SRDTMLIDYDQVEALAQQ-H 171 (425)
T ss_dssp CC--CSSHHHHHHHHH--HHHCCTTCEEEEECC------------------CEEEEECC-CTTTSSCCHHHHHHHHHH-H
T ss_pred ee--cCchHHHHHHHH--HHccCCCCEEEEcccccccceecchhhhhcccceeeeecCC-CcccCccCHHHHHHHHhh-c
Confidence 45 888999999885 3347899999999999987 2222224455 4445555 234578999999999863 2
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc-ccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435 177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY-QGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM 255 (407)
Q Consensus 177 ~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 255 (407)
+++++++ ++|+||+ ..++++|+++|++||++||+||+| .++.+.+.... . .. ...+++.|+||.+
T Consensus 172 ~~~~v~~-~~~~~~~-----~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~--~----~~--~~di~~~s~sK~l 237 (425)
T 3ecd_A 172 KPSLIIA-GFSAYPR-----KLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHAN--P----VE--HAHVVTSTTHKTL 237 (425)
T ss_dssp CCSEEEE-ECSCCCS-----CCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCC--G----GG--TCSEEEEESSGGG
T ss_pred CCcEEEE-ccccCCC-----cCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccC--c----hh--cCcEEEecCCccc
Confidence 4677777 6789975 346789999999999999999995 33333321100 0 11 1238899999987
Q ss_pred cccCCCcceeEEeecChhhHHHHHHHHhhhhhccc-CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435 256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMY-SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD 334 (407)
Q Consensus 256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (407)
+|.|+||+ +++++++.+.+.. ...... .+++...+.++..++... ..+..++.+++++++++++.+
T Consensus 238 --~g~~~g~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~a~~~~-----~~~~~~~~~~~~~~~~~~l~~ 304 (425)
T 3ecd_A 238 --RGPRGGFV--LTNDEEIAKKINS----AVFPGLQGGPLMHVIAGKAVAFGEA-----LTDDFKTYIDRVLANAQALGD 304 (425)
T ss_dssp --CCCSCEEE--EESCHHHHHHHHH----HHC-----CCCHHHHHHHHHHHHHH-----TSHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCcEEE--EeCCHHHHHHHHh----hhCccccCCccHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHH
Confidence 67899999 6776655444333 222211 133443333333333211 013456778888999999999
Q ss_pred HHHhcCCCCCcccccC-CceeEEecC-----CCHHHHHHhHhhccEEEc----CC--------C--eEEecC-----CCC
Q 015435 335 ALSARGTPGDWSHIIK-QIGMFTFTG-----LNSEQVAFMTKEYHIYMT----SD--------G--RISMAG-----LSS 389 (407)
Q Consensus 335 ~l~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~l~~~gi~~~----~g--------g--Ris~~~-----~~~ 389 (407)
.|++.+ +.+..+ ..+++.|+. .+.+.+.+.|+++||.+. |+ + |+++.. .++
T Consensus 305 ~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~ 380 (425)
T 3ecd_A 305 VLKAGG----VDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGA 380 (425)
T ss_dssp HHHHTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCH
T ss_pred HHHhCC----CeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCH
Confidence 999877 555543 345555553 356778888888999998 54 1 666332 246
Q ss_pred CChhHHHHHHHHHHHh
Q 015435 390 KTVPHLTDAIHAAVTR 405 (407)
Q Consensus 390 e~i~~~~~~l~~~l~~ 405 (407)
+++++++++|++++++
T Consensus 381 e~i~~~~~~l~~~l~~ 396 (425)
T 3ecd_A 381 AEFREVGRLILEVFEA 396 (425)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8999999999998865
No 194
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.91 E-value=1.6e-23 Score=199.99 Aligned_cols=321 Identities=16% Similarity=0.182 Sum_probs=200.7
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhcccccccc------CCCCCCcHHHH----HHHHHHHhCCCCCCCCCCc
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKE------YLPIVGLVDFN----KLSAKLILGADSPAIKDNR 100 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------y~~~~g~~~l~----~~~a~~~~~~~~~~~~~~~ 100 (407)
..+++++.+. |.++.+.+++.+.+. .....+ |.......+++ +.+++++ +.. ++.
T Consensus 24 ~~~~~~~~~~-------~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~-g~~-----~~~ 88 (405)
T 2vi8_A 24 AKIELIASEN-------FVSRAVMEAQGSVLT--NKYAEGYPGRRYYGGCEYVDIVEELARERAKQLF-GAE-----HAN 88 (405)
T ss_dssp HSEECCTTCC-------CCCHHHHHHHTSGGG--GCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-TCS-----EEE
T ss_pred cceeeccCcc-------cCCHHHHHHHHHHhh--cccccCCCCccccccchHHHHHHHHHHHHHHHHh-CCC-----ceE
Confidence 4677775432 446666666655553 111111 21112233444 5788877 431 133
Q ss_pred eEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH-H--HhhcCc--eeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435 101 VTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK-V--FTLAGL--SVKTYRYYDPATRGLNFQGLLEDLRAA 175 (407)
Q Consensus 101 i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~-~--~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~i~~~ 175 (407)
+++ ++| ++++.+++..+ +.+||+|+++.|+|..+.. . +...|. +++.+++ ++.++.+|++++++.+.+.
T Consensus 89 i~~--~sG-t~a~~~a~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~i~~~ 162 (405)
T 2vi8_A 89 VQP--HSG-AQANMAVYFTV--LEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGV-DPETHVIDYDDVREKARLH 162 (405)
T ss_dssp CCC--SSH-HHHHHHHHHHH--CCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECB-CTTTCSBCHHHHHHHHHHH
T ss_pred EEe--cCc-HHHHHHHHHHh--cCCCCEEEEecccccchhcccchhhhccceeEEEeccc-ccccCCcCHHHHHHHHHhc
Confidence 334 554 99999985443 7799999999999988754 2 224444 6777766 2356789999999999731
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccC-CCCCchhHHHHHHHHcCCcEEEEEecCcc
Q 015435 176 PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS-GSLDADAQSVRMFVADGGECLVAQSYAKN 254 (407)
Q Consensus 176 ~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 254 (407)
+++++++ +|+|. |... ++++|+++|++||+++|+|++|..... .+. .... + . ...++++|+||.
T Consensus 163 -~~~~v~~--~~~~~-~~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~~~~---~-~--~~di~~~s~sK~ 227 (405)
T 2vi8_A 163 -RPKLIVA--AAAAY-PRII---DFAKFREIADEVGAYLMVDMAHIAGLVAAGL--HPNP---V-P--YAHFVTTTTHKT 227 (405)
T ss_dssp -CCSEEEE--CCSSC-CSCC---CHHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCS---T-T--TCSEEEEESSST
T ss_pred -CCeEEEE--eCCCC-CccC---CHHHHHHHHHHcCCEEEEEccccccccccCc--CCCc---c-c--cCCEEEEecccc
Confidence 4566665 34443 3433 488999999999999999999873221 111 0111 1 1 233889999999
Q ss_pred cc-ccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCC-ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 015435 255 MG-LYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSP-PIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQL 332 (407)
Q Consensus 255 ~~-~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (407)
++ ++| ||+ +++ +++.+. +......+..++ +...+.++..+++... ...+++.+++++++++++
T Consensus 228 ~~g~~g---G~~--~~~-~~~~~~----l~~~~~~~~~~~~~~~~~aa~~~al~~~~-----~~~~~~~~~~~~~~~~~l 292 (405)
T 2vi8_A 228 LRGPRG---GMI--LCQ-EQFAKQ----IDKAIFPGIQGGPLMHVIAAKAVAFGEAL-----QDDFKAYAKRVVDNAKRL 292 (405)
T ss_dssp TCCCSC---EEE--EEC-HHHHHH----HHHHHTTTTCSSCCHHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC---eEE--EEc-HHHHHH----HHhhhcccccCCCCHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHH
Confidence 97 555 888 565 554444 333322232333 3333444344444211 134677888999999999
Q ss_pred HHHHHhcCCCCCcccccC-CceeEEecCC-----CHHHHHHhHhhccEEEcCC------------C--eEEecC-----C
Q 015435 333 FDALSARGTPGDWSHIIK-QIGMFTFTGL-----NSEQVAFMTKEYHIYMTSD------------G--RISMAG-----L 387 (407)
Q Consensus 333 ~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~g------------g--Ris~~~-----~ 387 (407)
.+.|++.| +.+..+ ..+++.|+.+ +.+.+.+.|.++||.+.+| + ||+++. +
T Consensus 293 ~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~ 368 (405)
T 2vi8_A 293 ASALQNEG----FTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGF 368 (405)
T ss_dssp HHHHHHTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTC
T ss_pred HHHHHhCC----CeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCC
Confidence 99999886 565544 3456666643 4566666677799998763 2 999873 5
Q ss_pred CCCChhHHHHHHHHHHHhh
Q 015435 388 SSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 388 ~~e~i~~~~~~l~~~l~~~ 406 (407)
+++++++++++|++++++.
T Consensus 369 ~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 369 GLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp CHHHHHHHHHHHHHHHTCT
T ss_pred CHHHHHHHHHHHHHHHhcc
Confidence 7899999999999988653
No 195
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.91 E-value=2e-23 Score=202.18 Aligned_cols=305 Identities=10% Similarity=0.015 Sum_probs=196.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCC-----ceEEeecCCcccHHHHHHHHHHh-h-----cCC-----CeEEec
Q 015435 69 KEYLPIVGLVDFNKLSAKLILGADSPAIKDN-----RVTTVQCLSGTGSLRVGAEFLAR-H-----YHQ-----LTIYIP 132 (407)
Q Consensus 69 ~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~-----~i~~~~t~g~t~a~~~~~~~~~~-~-----~~g-----d~Vi~~ 132 (407)
.+|....+..++++++++++....+.. .+ .+++ |+|||+++.+++..+.. . .+| ++|+++
T Consensus 71 ~~~~~~~~~~~l~~~~~~~la~l~g~~--~~~~~~~~~~~--t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~ 146 (452)
T 2dgk_A 71 IDKEEYPQSAAIDLRCVNMVADLWHAP--APKNGQAVGTN--TIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCG 146 (452)
T ss_dssp TCTTTCHHHHHHHHHHHHHHHHHTTCC--CCTTSCCEEEE--ESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEES
T ss_pred CChhhChhHHHHHHHHHHHHHHHhCCC--cccccCCceEE--eCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEC
Confidence 445555676677777666553332322 23 4888 99999999988533321 0 144 589999
Q ss_pred CCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc--
Q 015435 133 QPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK-- 210 (407)
Q Consensus 133 ~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~-- 210 (407)
+ +|..+...++..|++++.+|++ +.++.+|+++++++++ +++++|++ ++|+||||.+. ++++|+++|+++
T Consensus 147 ~-~h~~~~~~~~~~G~~v~~v~~~-~~~~~~d~~~l~~~i~--~~t~~v~~-~~~~n~tG~~~---~l~~I~~ia~~~~~ 218 (452)
T 2dgk_A 147 P-VQICWHKFARYWDVELREIPMR-PGQLFMDPKRMIEACD--ENTIGVVP-TFGVTYTGNYE---FPQPLHDALDKFQA 218 (452)
T ss_dssp S-CCHHHHHHHHHTTCEEEECCCB-TTBCSCCHHHHHHHCC--TTEEEEEC-BBSCTTTCBBC---CHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHcCceEEEEecC-CCCCeECHHHHHHHHh--hCCEEEEE-EcCCcCCcccC---CHHHHHHHHHHHhh
Confidence 9 9999999999999999999984 3357899999999997 44555555 89999999975 578888889995
Q ss_pred ----CceeeeccccccccC---CCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhH-HHHHHHH
Q 015435 211 ----GLLPFFDSAYQGFAS---GSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVA-SRVESQL 282 (407)
Q Consensus 211 ----~~~li~D~~y~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~-~~~~~~~ 282 (407)
|+++++|++|..+.. .+. . .+. + ....-.++..|++| ++++|.++|++ ++++++.. +.+.. .
T Consensus 219 ~~~~~~~l~vD~a~~~~~~~~~~~~-~-~~~---~-~~~~~d~~~~~~hK-~~~~~~~~G~~--~~~~~~~~~~~~~~-~ 288 (452)
T 2dgk_A 219 DTGIDIDMHIDAASGGFLAPFVAPD-I-VWD---F-RLPRVKSISASGHK-FGLAPLGCGWV--IWRDEEALPQELVF-N 288 (452)
T ss_dssp HHCCCCCEEEECTTGGGTHHHHCTT-C-CCS---T-TSTTEEEEEEETTT-TTCCCSSCEEE--EESSGGGSCGGGCE-E
T ss_pred ccCCCCcEEEEcccHHHHHHhhCcc-c-hhh---c-CCCCCcEEEECccc-ccCCCCCeEEE--EEcCHHHHHHHhcc-C
Confidence 999999999987652 110 0 000 0 11234567788899 56688999999 67655421 21100 0
Q ss_pred hhhhh----cccC--CC---ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc----
Q 015435 283 KLVIR----PMYS--SP---PIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHII---- 349 (407)
Q Consensus 283 ~~~~~----~~~~--~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---- 349 (407)
..+.. .... +. ..+++.++...+. .+.+++..++..++++++.+.|++.+. +++..
T Consensus 289 ~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg--------~~g~~~~~~~~~~~a~~l~~~L~~~~~---~~~~~~~~~ 357 (452)
T 2dgk_A 289 VDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG--------REGYTKVQNASYQVAAYLADEIAKLGP---YEFICTGRP 357 (452)
T ss_dssp ECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHTTSS---EEEEEECCT
T ss_pred ccccCCCCCCcccCCCChhHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHHhCCC---eEEecCCCC
Confidence 00100 0000 11 1223333333332 134667788899999999999998753 55543
Q ss_pred -CCceeEEec--C-----CCHHHHHHhHhhccEEEc----CC---C----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 350 -KQIGMFTFT--G-----LNSEQVAFMTKEYHIYMT----SD---G----RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 350 -~~~~~~~~~--~-----~~~~~~~~~l~~~gi~~~----~g---g----Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
+..+++.|. + ++.+.+...|.++||.+. |. + ||+++. .++++++++++.|+++++++
T Consensus 358 ~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~ 434 (452)
T 2dgk_A 358 DEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYL 434 (452)
T ss_dssp TTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 344555442 2 243555555556788432 32 2 899875 46789999999999987653
No 196
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.91 E-value=7.1e-23 Score=193.75 Aligned_cols=292 Identities=11% Similarity=0.079 Sum_probs=193.1
Q ss_pred cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH--HHHhhcC--ceeeE
Q 015435 77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP--KVFTLAG--LSVKT 152 (407)
Q Consensus 77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~--~~~~~~G--~~~~~ 152 (407)
..++++.+++++ +.. +.+++ |+|||+++++++ ..+.+||+|++++++|.++. ..++..| .+++.
T Consensus 37 ~~~~~~~l~~~~-~~~------~~v~~--~~sgt~a~~~~~---~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~ 104 (379)
T 3ke3_A 37 MNDLLSNLKTVY-NAE------AAVII--PGSGTYGMEAVA---RQLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTV 104 (379)
T ss_dssp HHHHHHHHHHHH-TCS------EEEEE--ESCHHHHHHHHH---HHHCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEE
T ss_pred HHHHHHHHHHHh-CCC------CEEEE--cCChhHHHHHHH---HhCCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEE
Confidence 446677777776 431 57888 999999999984 44679999999999887653 3444555 47777
Q ss_pred EEeecC------CC-CCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 153 YRYYDP------AT-RGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 153 v~~~~~------~~-~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
++.... .. ..+|++++++.+.+ ++++++++ ++++||||.+.+.+++++|+++|++||+++|+|++++ ..
T Consensus 105 ~~~~~~g~~~~~~~~~~~d~~~l~~~i~~-~~~~~v~~-~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~- 180 (379)
T 3ke3_A 105 LTAERTEDTEAPKPFAPVDIETAVAKIKE-DKSAIVYA-PHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GC- 180 (379)
T ss_dssp EECEESSCCSSCCCEECCCHHHHHHHHHH-HTCSEEEE-ESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TT-
T ss_pred EeccccccccccCCCCCCCHHHHHHHHhh-cCCcEEEE-EeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CC-
Confidence 776320 01 25799999999953 24667666 7889999999999999999999999999999999975 21
Q ss_pred CCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHH-h-----------------hhhh
Q 015435 226 GSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQL-K-----------------LVIR 287 (407)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~-~-----------------~~~~ 287 (407)
.+. .+.. .+..+++.|++|.++. +.++|++ +++ +++.+.+.... . ...+
T Consensus 181 --~~~---~~~~----~~~d~~~~s~~K~l~~-~~g~g~~--~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ 247 (379)
T 3ke3_A 181 --VWL---DMKE----LGIDVLISAPQKGWSS-TPCAGLV--MLS-AAAIKKVESTESNCFSLDLKQWLTIMRAYENGGH 247 (379)
T ss_dssp --CCC---CHHH----HTCSEEEECTTTTTCS-CCCEEEE--EEC-HHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSC
T ss_pred --ccc---cccc----cCCCEEEecchhhcCC-CCceEEE--EEC-HHHHHhhhcCCCCceeecHHHHHHHHHhhhccCC
Confidence 111 1111 1345788899998863 3457887 344 44444332200 0 0000
Q ss_pred cccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCC---ceeEE-ecCCCHH
Q 015435 288 PMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQ---IGMFT-FTGLNSE 363 (407)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~-~~~~~~~ 363 (407)
.+..+++...+.++..+++... ...+++.+++++++++++.+.|+++| +.+..+. .+... +..-+.+
T Consensus 248 ~~~~t~~~~~~~a~~aal~~~~-----~~g~~~~~~~~~~l~~~l~~~l~~~g----~~~~~~~~~~~~~i~~~~~~~~~ 318 (379)
T 3ke3_A 248 AYHATMPTDSLRQFRDAILEAK-----EIGFDILRDAQWELGNRVRKVLTDKG----IESVAAEGFEAPGVVVSYTERDD 318 (379)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTT----CCBSBCTTCBCSSEEEEECSCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-----HhcHHHHHHHHHHHHHHHHHHHHHcC----CEecCCccccCceEEEEccCCcc
Confidence 1122566666666666654221 12257788889999999999999887 4443322 22222 2222333
Q ss_pred HH-HHhHhhccEEEcCC----------C---eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 364 QV-AFMTKEYHIYMTSD----------G---RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 364 ~~-~~~l~~~gi~~~~g----------g---Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
.. ...|.++||.+.+| + ||++.. .+++|+++++++|+++++++
T Consensus 319 ~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~ 376 (379)
T 3ke3_A 319 MHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEV 376 (379)
T ss_dssp HHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence 32 45567789988765 3 888753 47899999999999998765
No 197
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.90 E-value=1.2e-23 Score=203.34 Aligned_cols=321 Identities=18% Similarity=0.189 Sum_probs=199.0
Q ss_pred CeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCC---CCc------HHHH-HHHHHHHhCCCCCCCCCCce
Q 015435 32 VKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPI---VGL------VDFN-KLSAKLILGADSPAIKDNRV 101 (407)
Q Consensus 32 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~---~g~------~~l~-~~~a~~~~~~~~~~~~~~~i 101 (407)
+.|+|..+. + +.++.+++++.+.+. .....+|+.. .|. .++. +.+++++ +.. ...
T Consensus 46 ~~i~l~~~~----~--~~~~~v~~a~~~~~~--~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~-g~~------~~~ 110 (447)
T 3h7f_A 46 DTLEMIASE----N--FVPRAVLQAQGSVLT--NKYAEGLPGRRYYGGCEHVDVVENLARDRAKALF-GAE------FAN 110 (447)
T ss_dssp HSEECCTTC----C--CCCHHHHHHHTSGGG--GCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-TCS------EEE
T ss_pred CceeEecCC----C--CCCHHHHHHHHHHhc--CCccccCCcccccCccHHHHHHHHHHHHHHHHHc-CCC------ceE
Confidence 667775432 2 446666666655553 1111223221 232 2233 5566655 431 233
Q ss_pred EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH---HHhh--cCceeeEEEeecCCCCCcChhhHHHHHHcCC
Q 015435 102 TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK---VFTL--AGLSVKTYRYYDPATRGLNFQGLLEDLRAAP 176 (407)
Q Consensus 102 ~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~---~~~~--~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 176 (407)
++ ++||++++..++ ...+.+||+|++++|+|..+.. .... .+..++.+++ ++.++.+|++++++.+.+ .
T Consensus 111 v~--~~sGs~a~~~a~--~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~i~~-~ 184 (447)
T 3h7f_A 111 VQ--PHSGAQANAAVL--HALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGV-DPATHLIDMDAVRATALE-F 184 (447)
T ss_dssp CC--CSSHHHHHHHHH--HHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECC-CTTTCSCCHHHHHHHHHH-H
T ss_pred EE--eCCHHHHHHHHH--HHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCc-CcccCCcCHHHHHHHHHh-c
Confidence 33 777889998884 4457899999999999887322 1122 3445556665 244567999999999863 2
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc-ccccCCCCCchhHHHHHHHHcCCcEEEEEecCccc
Q 015435 177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY-QGFASGSLDADAQSVRMFVADGGECLVAQSYAKNM 255 (407)
Q Consensus 177 ~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 255 (407)
+++++++ ++|+||++. ++++|+++|++||++||+|++| .++.+.+..... + . ...+++.|+||.+
T Consensus 185 ~~~~i~~-~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~-----~-~--~~di~~~s~sK~l 250 (447)
T 3h7f_A 185 RPKVIIA-GWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP-----V-P--HADVVSTTVHKTL 250 (447)
T ss_dssp CCSEEEE-ECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS-----T-T--TCSEEEEESSGGG
T ss_pred CCeEEEE-cCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC-----C-C--CCcEEEecCCcCC
Confidence 3556555 789999976 7899999999999999999996 434332211110 0 1 2247799999987
Q ss_pred cccCCCcceeEEeecChhhHHHHHHHHhhhhhccc-CCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 015435 256 GLYGERVGALSIVCKTEDVASRVESQLKLVIRPMY-SSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFD 334 (407)
Q Consensus 256 ~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (407)
+ |+|.||+ +++ +++.+.+.. ...... .+++...+.++..++.... ....++.++++.++++++.+
T Consensus 251 ~--G~~gG~i--~~~-~~~~~~l~~----~~~~~~~~~~~~~~~~a~~~a~~~~~-----~~~~~~~~~~~~~~~~~l~~ 316 (447)
T 3h7f_A 251 G--GGRSGLI--VGK-QQYAKAINS----AVFPGQQGGPLMHVIAGKAVALKIAA-----TPEFADRQRRTLSGARIIAD 316 (447)
T ss_dssp C--CCSCEEE--EEC-GGGHHHHHH----HHTTTTCSSCCHHHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCCeEEE--EEC-HHHHHHHhh----hcCCcccCCccHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHHHH
Confidence 4 8899998 454 555554433 222222 2333333443333332111 12356777888899999999
Q ss_pred HHHhc-----CCCCCccccc-CCceeEEec-----CCCHHHHHHhHhhccEEEc----CC---------C-eEEecC---
Q 015435 335 ALSAR-----GTPGDWSHII-KQIGMFTFT-----GLNSEQVAFMTKEYHIYMT----SD---------G-RISMAG--- 386 (407)
Q Consensus 335 ~l~~~-----~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~l~~~gi~~~----~g---------g-Ris~~~--- 386 (407)
.|++. | +.... +..+++.|+ +++.+.+..+|+++||.+. |+ + ||+...
T Consensus 317 ~L~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~ 392 (447)
T 3h7f_A 317 RLMAPDVAKAG----VSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALAT 392 (447)
T ss_dssp HHTSHHHHHTT----CEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHH
T ss_pred HHHhccccCCC----eEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhh
Confidence 99877 6 55443 234445554 3367788888888899988 43 1 876532
Q ss_pred --CCCCChhHHHHHHHHHHHh
Q 015435 387 --LSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 387 --~~~e~i~~~~~~l~~~l~~ 405 (407)
+++++++++++.|.+++++
T Consensus 393 ~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 393 RGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp HTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 4679999999999998864
No 198
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.90 E-value=1.8e-22 Score=190.44 Aligned_cols=311 Identities=14% Similarity=0.086 Sum_probs=196.3
Q ss_pred cccchhHHHHHHHHhccccccccCCC-CCCcHHHHHHH-HHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh-hc
Q 015435 48 PLVLNVVRKAEQLLVNDQSRVKEYLP-IVGLVDFNKLS-AKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR-HY 124 (407)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~y~~-~~g~~~l~~~~-a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~-~~ 124 (407)
+.++.+++++.+.+. ... |.+ .....++++++ ++++ +. .+++++ ++|||+++.+++ ... +.
T Consensus 13 ~~~~~i~~a~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~-g~------~~~~v~--~~sgt~al~~al--~~l~~~ 76 (377)
T 3ju7_A 13 VPVIEYLDELKEIDA--SHI---YTNYGPINQRFEQTIMSGFF-QN------RGAVTT--VANATLGLMAAI--QLKKRK 76 (377)
T ss_dssp CCGGGGHHHHHHHHH--HTC---CSSSCHHHHHHHHHHHHHTS-TT------CSEEEE--ESCHHHHHHHHH--HHHSCT
T ss_pred CCcHHHHHHHHHHHH--cCC---cccCCHHHHHHHHHHHHHHh-CC------CCeEEE--eCCHHHHHHHHH--HHcCCC
Confidence 446666777777765 222 332 34578999999 9988 41 167888 999999999884 444 67
Q ss_pred CCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCC--CcEEEEecCCCCCCCCCCCHHHHHH
Q 015435 125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPS--GAIVLLHACAHNPTGVDPTLEQWEQ 202 (407)
Q Consensus 125 ~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~--~~~v~i~~~p~NPtG~~~~~~~l~~ 202 (407)
+||+|+++.|+|..+...+...|++++.++++ +.++.+|++++++++.. ++ +++++ |+||||...+ +++
T Consensus 77 ~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~~-~~~~tk~v~----~~~~~G~~~~---~~~ 147 (377)
T 3ju7_A 77 KGKYALMPSFTFPATPLAAIWCGLEPYFIDIS-IDDWYMDKTVLWDKIEE-LKEEVAIVV----PYATFGSWMN---LEE 147 (377)
T ss_dssp TCCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHHHHHHH-HGGGEEEEC----CBCGGGBCCC---CHH
T ss_pred CcCEEEECCCCcHHHHHHHHHcCCEEEEEecC-CccCCcCHHHHHHHHhc-CCCCceEEE----EECCCCCccC---HHH
Confidence 99999999999999999999999999999983 45688999999998831 23 45443 5789999765 677
Q ss_pred HHHHHHHcCceeeeccccccccCCCCCchhHHHHHH-HHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHH
Q 015435 203 IRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMF-VADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQ 281 (407)
Q Consensus 203 i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~ 281 (407)
|.++|+ ||+++|+|++++....... . . + ....+-.++..+.+|.++. | +.|++ +++++++.+++...
T Consensus 148 i~~la~-~~~~vi~D~a~a~g~~~~~--~--~---~g~~~~d~~~~S~~~~K~l~~-g-~gG~~--~~~~~~l~~~~~~~ 215 (377)
T 3ju7_A 148 YEELEK-KGVPVVVDAAPGFGLMNGG--M--H---YGQDFSGMIIYSFHATKPFGI-G-EGGLI--YSKNEEDIQRIKRM 215 (377)
T ss_dssp HHHHHH-TTCCBEEECTTCTTCEETT--E--E---TTTTCSSEEEEECBTTSSSCC-B-SCEEE--EESCHHHHHHHHHH
T ss_pred HHHHHh-cCCEEEEECCCccCCeECC--E--e---ccCCCCcEEEEECCCCCcCCC-C-CcEEE--EECCHHHHHHHHHH
Confidence 777799 9999999999864332100 0 0 1 0112333444445799984 5 56777 68887766665442
Q ss_pred Hhhhhh--------cccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcccccCCc
Q 015435 282 LKLVIR--------PMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTP-GDWSHIIKQI 352 (407)
Q Consensus 282 ~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~ 352 (407)
...... ......+.+.+..+...++ .++...++.+++++++.+.|++.+.- ..+.......
T Consensus 216 ~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~----------~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 285 (377)
T 3ju7_A 216 GNFGFDTNRECTMMGFNCKMSEYAAAIGIATMK----------KWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEA 285 (377)
T ss_dssp TBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHH----------THHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSC
T ss_pred HhcCCCCCCceeeccccCCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCc
Confidence 221110 0112233333333333332 24455566667777888888776520 0011111111
Q ss_pred e---eEEec-C--CCHHHHHHhHhhccEEEcCC----------------C-------------eEEecC-CCCCChhHHH
Q 015435 353 G---MFTFT-G--LNSEQVAFMTKEYHIYMTSD----------------G-------------RISMAG-LSSKTVPHLT 396 (407)
Q Consensus 353 ~---~~~~~-~--~~~~~~~~~l~~~gi~~~~g----------------g-------------Ris~~~-~~~e~i~~~~ 396 (407)
. ++.+. + .+.+.+...|+++||.+..+ + |+.+.. ++++|+++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~ 365 (377)
T 3ju7_A 286 VIQQFMPILCPEEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIV 365 (377)
T ss_dssp BCCSSEEEECCTTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHH
T ss_pred ceEEEEEEEeCChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHH
Confidence 1 11211 1 13777888888899987542 0 555543 6789999999
Q ss_pred HHHHHHHHh
Q 015435 397 DAIHAAVTR 405 (407)
Q Consensus 397 ~~l~~~l~~ 405 (407)
+.|++++..
T Consensus 366 ~~l~~~~~~ 374 (377)
T 3ju7_A 366 ICLGQKVVS 374 (377)
T ss_dssp HHHTC----
T ss_pred HHHHHHHhc
Confidence 999887753
No 199
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.90 E-value=7.8e-22 Score=187.31 Aligned_cols=215 Identities=16% Similarity=0.137 Sum_probs=155.6
Q ss_pred CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh-----hcCc
Q 015435 74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT-----LAGL 148 (407)
Q Consensus 74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~-----~~G~ 148 (407)
.....++++.++++. +. ++.++ ++||++|+.++ +..+.+||+|++++|+|.+....+. ..|.
T Consensus 66 ~p~~~~l~~~la~l~-g~-------~~~~~--~~sG~~Ai~~~---~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~ 132 (400)
T 3nmy_A 66 NPTRFAYERCVAALE-GG-------TRAFA--FASGMAATSTV---MELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGL 132 (400)
T ss_dssp CHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHH---HTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCC
T ss_pred CHHHHHHHHHHHHHh-CC-------CCEEE--ecCHHHHHHHH---HHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCe
Confidence 345678888999887 43 46777 88889999875 4567899999999999986655543 4699
Q ss_pred eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435 149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL 228 (407)
Q Consensus 149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~ 228 (407)
+++.++. .|++++++++. ++++++++ .+|+||||.+.+ +++|+++|++||+++|+|++|.......
T Consensus 133 ~~~~v~~-------~d~~~l~~~i~--~~~~~v~~-e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~- 198 (400)
T 3nmy_A 133 DFSFVDL-------TDPAAFKAAIR--ADTKMVWI-ETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR- 198 (400)
T ss_dssp EEEEECT-------TSHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC-
T ss_pred EEEEECC-------CCHHHHHHHhc--cCCCEEEE-ECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 9988866 28899999987 56677776 899999999985 8888889999999999999986433211
Q ss_pred CchhHHHHHHHHcCCcEEEEEecCccccccCCCcce-eEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcC
Q 015435 229 DADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGA-LSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKD 307 (407)
Q Consensus 229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
.......+++.|+||.++.+|.++|+ ++ ++.++++.+.+. ..........+...+..+...++.
T Consensus 199 ----------~~~~g~div~~S~sK~l~g~g~~~gG~~v-v~~~~~~~~~l~----~~~~~~g~~~~~~~a~~~l~~l~~ 263 (400)
T 3nmy_A 199 ----------PLSLGADLVVHSATKYLNGHSDMVGGIAV-VGDNAELAEQMA----FLQNSIGGVQGPFDSFLALRGLKT 263 (400)
T ss_dssp ----------GGGGTCSEEEEETTTTTTCSSSCCCEEEE-ECSCHHHHHHHH----HHHHHHCCBCCHHHHHHHHHHHTT
T ss_pred ----------hhhcCCcEEEecCccccCCCCCcceeEEE-EeCCHHHHHHHH----HHHHhcCCCCCHHHHHHHHHhHhH
Confidence 01123568999999999988888877 32 566665555443 333333345566666666555543
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435 308 STMYKEWTLELKAMADRIISMRQQLFDALSARG 340 (407)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 340 (407)
+....++..++.+.+.+.|++.+
T Consensus 264 ----------l~~r~~~~~~~a~~l~~~L~~~p 286 (400)
T 3nmy_A 264 ----------LPLRMRAHCENALALAQWLETHP 286 (400)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHcCC
Confidence 23445666778888888887654
No 200
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.90 E-value=2.2e-23 Score=202.51 Aligned_cols=344 Identities=9% Similarity=0.008 Sum_probs=212.7
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccc-cccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQ-SRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC 106 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t 106 (407)
..++++|||..|.+..+.| ..++.+++++.+++.... .....|+. ....++++++++.+..... ...+++++ +
T Consensus 60 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~f--~ 133 (472)
T 1ohv_A 60 VDGNRMLDLYSQISSIPIG-YSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLIT--M 133 (472)
T ss_dssp TTSCEEEESSHHHHTCSSC-BTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEE--E
T ss_pred CCCCEEEECCCCHhhcccC-CCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEEE--e
Confidence 4578999999998755567 567778877776653100 11112322 3356899999886633221 13478999 9
Q ss_pred CCcccHHHHHHHHHHhh-----c------------------CC---CeEEecCCCCCChHHHHh-hcCcee---------
Q 015435 107 LSGTGSLRVGAEFLARH-----Y------------------HQ---LTIYIPQPTWGNHPKVFT-LAGLSV--------- 150 (407)
Q Consensus 107 ~g~t~a~~~~~~~~~~~-----~------------------~g---d~Vi~~~p~y~~~~~~~~-~~G~~~--------- 150 (407)
+||++|++.+++++... . +| ++|++.+++|+++..... ..|...
T Consensus 134 ~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~ 213 (472)
T 1ohv_A 134 ACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSF 213 (472)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCC
T ss_pred CCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCC
Confidence 99999999998776422 1 35 899999999998766553 323211
Q ss_pred --eEEEeecCC-C------C-----CcChhhHHHHHHcC----CCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcC
Q 015435 151 --KTYRYYDPA-T------R-----GLNFQGLLEDLRAA----PSGAIVLLHACAHNPTGV-DPTLEQWEQIRQLMRSKG 211 (407)
Q Consensus 151 --~~v~~~~~~-~------~-----~~d~~~l~~~i~~~----~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~~~~~~ 211 (407)
..++..... . + ..|+++|++.+.+. ++++++++ .+.+|+||. ..+++.+++|+++|++||
T Consensus 214 ~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~viv-e~v~~~~G~~~~~~~~l~~l~~l~~~~g 292 (472)
T 1ohv_A 214 DWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIV-EPIQSEGGDNHASDDFFRKLRDISRKHG 292 (472)
T ss_dssp CCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE-CSSBCTTTCBCCCHHHHHHHHHHHHHTT
T ss_pred CCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEE-cCCcCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 112221000 0 0 12678888888731 14555555 556788997 578999999999999999
Q ss_pred ceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccC
Q 015435 212 LLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYS 291 (407)
Q Consensus 212 ~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 291 (407)
++||+||+|.+++..+. ......+ ... ...-+.||||.+ +.| |++ + ++++ . .........+.
T Consensus 293 ~lli~DEv~~g~g~~g~---~~~~~~~-gv~-~~~Di~t~sK~~-l~G---G~~--~--~~~~----~-~~~~~~~~~T~ 354 (472)
T 1ohv_A 293 CAFLVDEVQTGGGSTGK---FWAHEHW-GLD-DPADVMTFSKKM-MTG---GFF--H--KEEF----R-PNAPYRIFNTW 354 (472)
T ss_dssp CEEEEECTTTTTTTTSS---SSGGGGG-CCS-SCCSEEEECGGG-SSE---EEE--E--CGGG----S-CSSSSSSCCSS
T ss_pred CEEEEeCcccCCCCCCC---chhcccc-CCC-CCCCEEEEcccc-ccC---Ccc--C--chhh----c-ccccccccCcc
Confidence 99999999988776542 1111111 100 002234899985 334 666 3 3332 1 12222223444
Q ss_pred CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCcccccCCceeEEecCCC----H-HH
Q 015435 292 SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR--GTPGDWSHIIKQIGMFTFTGLN----S-EQ 364 (407)
Q Consensus 292 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~----~-~~ 364 (407)
+.+++++.++.++++... + +...++++++++++.+.|+++ +.+..+....+.+.++.+ .+. . ++
T Consensus 355 ~~~~~~~aaa~aal~~~~------~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~-~~~~~~~~~~~ 425 (472)
T 1ohv_A 355 LGDPSKNLLLAEVINIIK------R--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSF-DTPDESIRNKL 425 (472)
T ss_dssp SSCHHHHHHHHHHHHHHH------H--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEE-ECSSHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHH------h--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEE-EeCChhHHHHH
Confidence 678888888887775321 1 235577777888888877765 221112223445555443 442 2 23
Q ss_pred HHHhHhhccEEEcCCC----eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 365 VAFMTKEYHIYMTSDG----RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 365 ~~~~l~~~gi~~~~gg----Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
...++ ++||.+.++| ||+++. .+++++++++++|+++++++
T Consensus 426 ~~~l~-~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 426 ISIAR-NKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp HHHHH-HTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHH-HCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 44555 4899999864 786553 48899999999999998765
No 201
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.90 E-value=3.5e-22 Score=191.05 Aligned_cols=278 Identities=15% Similarity=0.087 Sum_probs=183.2
Q ss_pred CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH----HHhhcCc
Q 015435 73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK----VFTLAGL 148 (407)
Q Consensus 73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~----~~~~~G~ 148 (407)
+.....++++.+++++ +. +..++ +++|++|+.+++ ...+.+||+|++++|+|.++.. .++..|.
T Consensus 80 ~~p~~~~le~~lA~l~-g~-------~~~v~--~~sG~~Ai~~al--~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~ 147 (430)
T 3ri6_A 80 SNPTVEDLEQRLKNLT-GA-------LGVLA--LGSGMAAISTAI--LTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGI 147 (430)
T ss_dssp CCHHHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHH--HHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTC
T ss_pred CCHHHHHHHHHHHHHH-CC-------CcEEE--ECCHHHHHHHHH--HHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCC
Confidence 3456788999999988 43 44666 778889999884 4458899999999999998877 5668899
Q ss_pred eeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCC
Q 015435 149 SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSL 228 (407)
Q Consensus 149 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~ 228 (407)
+++.++.. |++++++++. ++++++++ ++|+||||.+.+ +++|+++|+++|+++|+|++|.......
T Consensus 148 ~~~~v~~~-------d~~~l~~ai~--~~t~~v~~-e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~~- 213 (430)
T 3ri6_A 148 EVRFVDVM-------DSLAVEHACD--ETTKLLFL-ETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLLE- 213 (430)
T ss_dssp EEEEECTT-------CHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTCC-
T ss_pred EEEEeCCC-------CHHHHHHhhC--CCCeEEEE-ECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 99999761 8899999987 56777776 899999999886 7788888999999999999997554321
Q ss_pred CchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEee-cChhhH-----H---------HHHHHHhh-hhhcccCC
Q 015435 229 DADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVC-KTEDVA-----S---------RVESQLKL-VIRPMYSS 292 (407)
Q Consensus 229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~-~~~~~~-----~---------~~~~~~~~-~~~~~~~~ 292 (407)
. ......+++.|+||.++.+|..+|.++ ++ .+.... . .+...... ........
T Consensus 214 ---~-------~~~g~div~~S~sK~l~g~g~~~gG~v-v~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~ 282 (430)
T 3ri6_A 214 ---A-------KRLGVDIEVLSSTKFISGGGTSVGGVL-IDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPS 282 (430)
T ss_dssp ---G-------GGGTCSEEEEECCCEEETTEEECCEEE-EECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCC
T ss_pred ---h-------HHcCCEEEEECCcccccCCCCceEEEE-EECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCC
Confidence 1 112346889999999997777777763 32 332210 0 01111111 11112223
Q ss_pred CChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-cccC----------------CceeE
Q 015435 293 PPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWS-HIIK----------------QIGMF 355 (407)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~----------------~~~~~ 355 (407)
.+......+...+ +.+....++..++...+.+.|++.+. +. +.-| .||+.
T Consensus 283 ~~~~~a~l~l~~l----------~~l~~r~~~~~~na~~la~~L~~~p~---v~~V~~P~l~~~p~~~~~~~~~g~Gg~~ 349 (430)
T 3ri6_A 283 LSPHNAYLQSLGL----------ETMALRIERSCQNAQELAHWLLSIPQ---VKCVNHPSLPDSPFYAIAKRQFRYAGSI 349 (430)
T ss_dssp CCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHTTCTT---CEEEECTTSTTSTTHHHHHHHCSSCCSE
T ss_pred CCHHHHHHHHhhh----------hhHHHHHHHHHHHHHHHHHHHhCCCC---ccEEECCCCCCCccHHHHHHhCCCCceE
Confidence 3333333222222 33445556777888899999987642 22 2222 16645
Q ss_pred EecCC-CHHHHHHhHhh---ccEEEcCCC-------------------------------eEEecCCCCCChhHHHHHHH
Q 015435 356 TFTGL-NSEQVAFMTKE---YHIYMTSDG-------------------------------RISMAGLSSKTVPHLTDAIH 400 (407)
Q Consensus 356 ~~~~~-~~~~~~~~l~~---~gi~~~~gg-------------------------------Ris~~~~~~e~i~~~~~~l~ 400 (407)
.++.+ +.+...+++++ .++.+..|| |||++ .|+.+.+++.|+
T Consensus 350 lsf~l~~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG---~E~~~dl~~dl~ 426 (430)
T 3ri6_A 350 LTFELESKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG---IEEIEDLKEDIL 426 (430)
T ss_dssp EEEECSSHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC---SSCHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHH
Confidence 55555 44444444444 344444432 66665 388999999999
Q ss_pred HHH
Q 015435 401 AAV 403 (407)
Q Consensus 401 ~~l 403 (407)
++|
T Consensus 427 ~al 429 (430)
T 3ri6_A 427 QAL 429 (430)
T ss_dssp HHH
T ss_pred Hhh
Confidence 886
No 202
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.90 E-value=2.8e-22 Score=193.35 Aligned_cols=305 Identities=10% Similarity=-0.019 Sum_probs=198.2
Q ss_pred cchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHH-------h
Q 015435 50 VLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA-------R 122 (407)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~-------~ 122 (407)
.+++++++.+.+. . ..|.+..+..++++++++++ +. +++++ ++||++++.+++..+. .
T Consensus 42 ~~~~~~a~~~~~~--~---~~~~~~~~~~~l~~~la~~~-g~-------~~~i~--~~sGt~a~~~al~~l~~~~~~~~~ 106 (437)
T 3bb8_A 42 GTKELQLMVEASL--D---GWLTTGRFNDAFEKKLGEYL-GV-------PYVLT--TTSGSSANLLALTALTSPKLGVRA 106 (437)
T ss_dssp CHHHHHHHHHHHH--H---CCCBSCHHHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHHHHTTCGGGGGGS
T ss_pred CHHHHHHHHHHHH--c---CCcCCChHHHHHHHHHHHHH-CC-------CcEEE--eCCHHHHHHHHHHHhhhccccccc
Confidence 4566666666664 1 23556678999999999998 53 36788 8899999999853321 0
Q ss_pred hcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHH
Q 015435 123 HYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQ 202 (407)
Q Consensus 123 ~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~ 202 (407)
+.+||+|+++.|+|..+...+...|++++.++.+ +.++.+|++++++.+. ++++++++.++++|| .++++
T Consensus 107 ~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~i~--~~~~~v~~~~~~g~~-------~~~~~ 176 (437)
T 3bb8_A 107 LKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVD-IPTYNVNASLIEAAVS--DKTKAIMIAHTLGNL-------FDLAE 176 (437)
T ss_dssp CCTTCEEEECSSSCHHHHHHHHHTTCEEEECCEE-TTTTEECGGGHHHHCC--TTEEEEEEECGGGCC-------CCHHH
T ss_pred CCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecc-CccCCcCHHHHHHhcC--CCCeEEEEeCCCCCh-------hcHHH
Confidence 5689999999999999999999999999999984 4457899999999987 556777773345555 46899
Q ss_pred HHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHH
Q 015435 203 IRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQL 282 (407)
Q Consensus 203 i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~ 282 (407)
|+++|+++|+++|+|++|+.....+. .. +... ..+++.||+|.++++|.+.|++ +++++.+.+.+ ..+
T Consensus 177 i~~l~~~~~~~li~D~a~~~g~~~~~--~~-----~~~~--~d~~~~s~~~~k~l~~g~gg~~--~~~~~~~~~~~-~~~ 244 (437)
T 3bb8_A 177 VRRVADKYNLWLIEDCCDALGSTYDG--KM-----AGTF--GDIGTVSFYPAKHITMGEGGAV--FTQSAELKSII-ESF 244 (437)
T ss_dssp HHHHHHHHTCEEEEECTTCTTCEETT--EE-----TTSS--SSEEEEECSTTSSSCCSSCEEE--EESCHHHHHHH-HHH
T ss_pred HHHHHHHcCCEEEEECccccCceECC--ee-----cccc--cCEEEEECcCCcCCCCCCeEEE--EeCCHHHHHHH-HHH
Confidence 99999999999999999974322111 10 1111 1267789988888899998988 56644433322 212
Q ss_pred hhhhhc------------------------------------ccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 015435 283 KLVIRP------------------------------------MYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRII 326 (407)
Q Consensus 283 ~~~~~~------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 326 (407)
...... +....+.+.+.++...++. +++..++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~----------~~~~~~~~~ 314 (437)
T 3bb8_A 245 RDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLER----------IEEFVEKRK 314 (437)
T ss_dssp HBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHH----------HHHHHHHHH
T ss_pred HHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHH----------HHHHHHHHH
Confidence 111000 0001123333333333321 233334446
Q ss_pred HHHHHHHHHHHhcCCCCCcccccC-----Cce--eEEe-c----CCCHHHHHHhHhhccEEEcCCC--------------
Q 015435 327 SMRQQLFDALSARGTPGDWSHIIK-----QIG--MFTF-T----GLNSEQVAFMTKEYHIYMTSDG-------------- 380 (407)
Q Consensus 327 ~~~~~l~~~l~~~~~~~~~~~~~~-----~~~--~~~~-~----~~~~~~~~~~l~~~gi~~~~gg-------------- 380 (407)
++.+++.+.|++++. +...+. ..+ .|.+ + +.+.+.+...|.++||.+.++.
T Consensus 315 ~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~v~~~~~~~~~~~p~~~~~~ 391 (437)
T 3bb8_A 315 ANFKYLKDALQSCAD---FIELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVK 391 (437)
T ss_dssp HHHHHHHHHGGGGTT---TEECCCCCTTEECCCSSEEEEECGGGSSCHHHHHHHHHHTTBCCBCCTTSSGGGSGGGSSCC
T ss_pred HHHHHHHHHhhccCC---ccccCCCCCCCceeeEEEEEEECCcCcCcHHHHHHHHHHCCCceeccCCcccccCchhhccC
Confidence 777888888887631 222211 012 1222 3 3567777777777899876430
Q ss_pred ------------------eEEecC-CCCCChhHHHHHHHHHHH
Q 015435 381 ------------------RISMAG-LSSKTVPHLTDAIHAAVT 404 (407)
Q Consensus 381 ------------------Ris~~~-~~~e~i~~~~~~l~~~l~ 404 (407)
||++.. .+++|++++++.|+++++
T Consensus 392 ~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 392 YRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp CEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 444443 578999999999998764
No 203
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.90 E-value=1.6e-22 Score=193.82 Aligned_cols=279 Identities=15% Similarity=0.215 Sum_probs=173.2
Q ss_pred HHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH---HHHhhcCc--eeeEEEee
Q 015435 82 KLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP---KVFTLAGL--SVKTYRYY 156 (407)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~---~~~~~~G~--~~~~v~~~ 156 (407)
+.+++++ +. +++++++ ++| ++++.+++ ...+.+||+|+++.|+|..+. ......|. ..+.++.
T Consensus 83 ~~la~~~-~~-----~~~~v~~--~sG-s~a~~~a~--~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~- 150 (420)
T 3gbx_A 83 DRAKELF-GA-----DYANVQP--HSG-SQANFAVY--TALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGI- 150 (420)
T ss_dssp HHHHHHH-TC-----SEEECCC--SSH-HHHHHHHH--HHHCCTTCEEEEEEEC------------CHHHHSEEEEEEE-
T ss_pred HHHHHHh-CC-----CCceeEe--cCc-HHHHHHHH--HHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccC-
Confidence 4555555 42 2345545 555 88998884 444789999999999998743 22223343 4445555
Q ss_pred cCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccc-cccCCCCCchhHHH
Q 015435 157 DPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ-GFASGSLDADAQSV 235 (407)
Q Consensus 157 ~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~-~~~~~~~~~~~~~~ 235 (407)
+.++.+|++++++++.+. +++++++ ++|+||+ .. ++++|+++|++||++||+||+|. ++...+.. ..
T Consensus 151 -~~~~~~d~~~l~~~i~~~-~~~~v~~-~~~~~~~--~~---~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~---~~- 218 (420)
T 3gbx_A 151 -DESGKIDYDEMAKLAKEH-KPKMIIG-GFSAYSG--VV---DWAKMREIADSIGAYLFVDMAHVAGLIAAGVY---PN- 218 (420)
T ss_dssp -CTTCSCCHHHHHHHHHHH-CCSEEEE-CCTTCCS--CC---CHHHHHHHHHHTTCEEEEECTTTHHHHHTTSS---CC-
T ss_pred -CccCCcCHHHHHHHHHhc-CCeEEEE-ecCccCC--cc---CHHHHHHHHHHcCCEEEEECCcchhceecccC---Cc-
Confidence 355679999999999732 3677766 7789875 33 48899999999999999999974 33322110 00
Q ss_pred HHHHHcCCcEEEEEecCccccccCCCcceeEEeecC--hhhHHHHHHHHhhhhhcccC-CCChhHHHHHHHHhcChhhHH
Q 015435 236 RMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKT--EDVASRVESQLKLVIRPMYS-SPPIHGASIVATILKDSTMYK 312 (407)
Q Consensus 236 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 312 (407)
......++++|+||.++ |.+.||+ ++++ +++.+. +......... +++...+.++...+...
T Consensus 219 ----~~~~~di~~~s~sK~~~--g~~gg~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~a~~~~---- 282 (420)
T 3gbx_A 219 ----PVPHAHVVTTTTHKTLA--GPRGGLI--LAKGGDEELYKK----LNSAVFPSAQGGPLMHVIAGKAVALKEA---- 282 (420)
T ss_dssp ----STTTSSEEEEESSGGGC--SCSCEEE--EESSCCHHHHHH----HHHHHC----CCCCHHHHHHHHHHHHHT----
T ss_pred ----ccccCCEEEeecccCCC--CCCceEE--EEcCCcHHHHHH----hhhhcCCCCCCCcchhHHHHHHHHHHHH----
Confidence 01124588999999985 5666888 5664 243333 3332222212 33444333333233211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC-CceeEEec-----CCCHHHHHHhHhhccEEEcC-------C
Q 015435 313 EWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK-QIGMFTFT-----GLNSEQVAFMTKEYHIYMTS-------D 379 (407)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~l~~~gi~~~~-------g 379 (407)
..+..++.+++++++++++.+.|++.+ +.+..+ ..+.+.|+ +.+.+.+.+.|+++||.+.+ +
T Consensus 283 -~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~ 357 (420)
T 3gbx_A 283 -MEPEFKVYQQQVAKNAKAMVEVFLNRG----YKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPK 357 (420)
T ss_dssp -TSHHHHHHHHHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSS
T ss_pred -HhHhHHHHHHHHHHHHHHHHHHHHhcC----CeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCcc
Confidence 013457788889999999999998876 555442 34445554 34667788888889999987 2
Q ss_pred ------C-eEEecC-----CCCCChhHHHHHHHHHHHh
Q 015435 380 ------G-RISMAG-----LSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 380 ------g-Ris~~~-----~~~e~i~~~~~~l~~~l~~ 405 (407)
+ ||++.. .++++++++++.|++++++
T Consensus 358 ~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 358 SPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred ccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 1 888753 3468899999999988864
No 204
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.89 E-value=1.4e-22 Score=198.05 Aligned_cols=331 Identities=9% Similarity=-0.012 Sum_probs=205.1
Q ss_pred cccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCC-------CCceEEeecCCcccHHHHHHHHH
Q 015435 48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIK-------DNRVTTVQCLSGTGSLRVGAEFL 120 (407)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~-------~~~i~~~~t~g~t~a~~~~~~~~ 120 (407)
+.++..+.+++.... +. ....|....+..++++.+++++....+.... ..++++ |+|||+|+..++..+
T Consensus 84 ~~~~~~~~~~~~~~~-n~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~--t~ggTeA~~~al~~~ 159 (486)
T 1js3_A 84 SSYPAMLADMLCGAI-GC-IGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVI--QGSASEATLVALLAA 159 (486)
T ss_dssp CCHHHHHHHHHHHHH-CC-CCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEE--ESCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-Cc-CccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEE--cCCcHHHHHHHHHHH
Confidence 334444555554443 22 3445666666778888887776333332211 246888 999999998885333
Q ss_pred Hh--hc-----CCC--------e--EEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC---CCcE
Q 015435 121 AR--HY-----HQL--------T--IYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP---SGAI 180 (407)
Q Consensus 121 ~~--~~-----~gd--------~--Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~---~~~~ 180 (407)
.. +. .|| + |+++.++|..+...++..|++++.+|+ +.++.+|+++|++++.+.. ..+.
T Consensus 160 ~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~--d~~~~~d~~~L~~~i~~~~~~g~~p~ 237 (486)
T 1js3_A 160 RTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPS--DGKFAMRASALQEALERDKAAGLIPF 237 (486)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeec--CCCCCCCHHHHHHHHHHHHhCCCCce
Confidence 21 11 043 3 788999999999999999999999998 3467899999999997321 1124
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCC
Q 015435 181 VLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGE 260 (407)
Q Consensus 181 v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 260 (407)
+++.++|+||||.+ +++++|+++|++||+++++|++|..+.....+.... +..+ . ....+..+++|.++.| +
T Consensus 238 ~vv~~~~~n~tG~~---~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~-~~g~-~--~adsi~~~~hK~~~~p-~ 309 (486)
T 1js3_A 238 FVVATLGTTSCCSF---DNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHL-LNGV-E--FADSFNFNPHKWLLVN-F 309 (486)
T ss_dssp EEEEEBSCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGG-GTTG-G--GCSEEEECHHHHSSCC-S
T ss_pred EEEEeCCCCCCCCC---CCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHH-hcCc-c--ccCeeEEchhhhcCCC-c
Confidence 55558999999985 679999999999999999999998765421111110 0001 1 1234557899998865 8
Q ss_pred CcceeEEeecChhh-HHHH---HHHHhhhhh---------ccc--C--CCChhHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 015435 261 RVGALSIVCKTEDV-ASRV---ESQLKLVIR---------PMY--S--SPPIHGASIVATILKDSTMYKEWTLELKAMAD 323 (407)
Q Consensus 261 r~G~~~~v~~~~~~-~~~~---~~~~~~~~~---------~~~--~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (407)
++|++ ++++++. .+.+ ...+..... .+. . ....+.+.++...+. .+.+++..+
T Consensus 310 ~~G~l--~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g--------~~g~~~~~~ 379 (486)
T 1js3_A 310 DCSAM--WVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG--------VKGLQAYIR 379 (486)
T ss_dssp SCEEE--EESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH--------HHHHHHHHH
T ss_pred ceEEE--EEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh--------HHHHHHHHH
Confidence 99999 6877653 2211 011111000 000 0 112334444444332 144677778
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccc-cCCceeEEec--CCC--HHHHHHhHhhccEEE-cCC---C----eEEecC--CC
Q 015435 324 RIISMRQQLFDALSARGTPGDWSHI-IKQIGMFTFT--GLN--SEQVAFMTKEYHIYM-TSD---G----RISMAG--LS 388 (407)
Q Consensus 324 ~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~--~~~--~~~~~~~l~~~gi~~-~~g---g----Ris~~~--~~ 388 (407)
+..++++++.+.|++.+. +++. .+..+++.|. +.+ .+.+.+.|.+.|+.+ .++ + |+++.. .+
T Consensus 380 ~~~~~a~~l~~~L~~~~~---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t 456 (486)
T 1js3_A 380 KHVQLSHEFEAFVLQDPR---FEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVE 456 (486)
T ss_dssp HHHHHHHHHHHHHHHCTT---EEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCC
T ss_pred HHHHHHHHHHHHHhcCCC---eEEeCCCceeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCC
Confidence 888999999999998742 6654 3556666654 221 233333344456543 321 2 999754 35
Q ss_pred CCChhHHHHHHHHHHHh
Q 015435 389 SKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 389 ~e~i~~~~~~l~~~l~~ 405 (407)
++++++++++|++++++
T Consensus 457 ~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 457 SGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67899999999998765
No 205
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.89 E-value=2.7e-22 Score=196.82 Aligned_cols=329 Identities=10% Similarity=0.048 Sum_probs=204.2
Q ss_pred cchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh------
Q 015435 50 VLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH------ 123 (407)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~------ 123 (407)
|...+.+++.... +. ....|....+..++++.+.+++....+.+.+++++++ |+|||+++..++..+...
T Consensus 105 ~~~~~~~~l~~~~-n~-~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~--t~ggtea~~~al~~~~~~~~~~~~ 180 (504)
T 2okj_A 105 IIGLAGEWLTSTA-NT-NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYSIMAARYKYFPEVK 180 (504)
T ss_dssp HHHHHHHHHHHHH-CC-BSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHhh-cc-CCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEE--eCCcHHHHHHHHHHHHHHHhhHHh
Confidence 4444444444443 22 2344655455455555554444221121112478999 999999999986444321
Q ss_pred cCC-----C-eEEecCCCCCChHHHHhhcCc---eeeEEEeecCCCCCcChhhHHHHHHcC---C-CCcEEEEecCCCCC
Q 015435 124 YHQ-----L-TIYIPQPTWGNHPKVFTLAGL---SVKTYRYYDPATRGLNFQGLLEDLRAA---P-SGAIVLLHACAHNP 190 (407)
Q Consensus 124 ~~g-----d-~Vi~~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~i~~~---~-~~~~v~i~~~p~NP 190 (407)
.+| + .|+++.++|..+...+...|. +++.+|. +.++.+|+++|++++.+. . .+.+|++ ++|+||
T Consensus 181 ~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~-~~~~~~ 257 (504)
T 2okj_A 181 TKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKC--NERGKIIPADFEAKILEAKQKGYVPFYVNA-TAGTTV 257 (504)
T ss_dssp HHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSCBCHHHHHHHHHHHHHTTCEEEEEEE-CBSCSS
T ss_pred hcCccccCCeEEEECCcchHHHHHHHHHcCCCcccEEEEec--CCCCCCCHHHHHHHHHHHHHCCCCceEEEE-eCCCCC
Confidence 246 6 789999999999999988877 8899988 345789999999999731 1 2345555 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeec
Q 015435 191 TGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCK 270 (407)
Q Consensus 191 tG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~ 270 (407)
||.+. ++++|+++|++||+++++|++|..+.....+.. .. +.......++..|++|.++.| .++|++ +++
T Consensus 258 tG~i~---~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~-~~---~~g~~~~D~i~~~~hK~~~~p-~~~g~l--~~~ 327 (504)
T 2okj_A 258 YGAFD---PIQEIADICEKYNLWLHVDAAWGGGLLMSRKHR-HK---LNGIERANSVTWNPHKMMGVL-LQCSAI--LVK 327 (504)
T ss_dssp SCCBC---CHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG-GG---GTTGGGCSEEEECTTSTTCCC-SCCEEE--EES
T ss_pred CCCcC---CHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhH-hh---cCCcccCCEEEECchhhcCCC-cceEEE--EEE
Confidence 99964 588889999999999999999987775321110 11 111112346778999998855 689999 677
Q ss_pred ChhhHHHHHHHHhhhhhcccC-----------------CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 015435 271 TEDVASRVESQLKLVIRPMYS-----------------SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLF 333 (407)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (407)
++++..........+...... ....+.+.++...+.. +.+++..++..++++++.
T Consensus 328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~--------~g~~~~~~~~~~~a~~l~ 399 (504)
T 2okj_A 328 EKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGT--------VGFENQINKCLELAEYLY 399 (504)
T ss_dssp STTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhH--------HHHHHHHHHHHHHHHHHH
Confidence 665433322111111100000 0123444444444431 346677788889999999
Q ss_pred HHHHhcCCCCCccccc---CCceeEEecCCC-------------------HHHHHHhHhhccE-EEcC----C--C--eE
Q 015435 334 DALSARGTPGDWSHII---KQIGMFTFTGLN-------------------SEQVAFMTKEYHI-YMTS----D--G--RI 382 (407)
Q Consensus 334 ~~l~~~~~~~~~~~~~---~~~~~~~~~~~~-------------------~~~~~~~l~~~gi-~~~~----g--g--Ri 382 (407)
+.|++.+. +++.. |..+++.|.... ...+.+.|.+.|+ .+.+ + + |+
T Consensus 400 ~~L~~~~~---~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi 476 (504)
T 2okj_A 400 AKIKNREE---FEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRM 476 (504)
T ss_dssp HHHTTCTT---EEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEE
T ss_pred HHHhcCCC---EEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEE
Confidence 99988632 66553 666766664211 1233334444564 3331 2 2 88
Q ss_pred EecC--CCCCChhHHHHHHHHHHHhh
Q 015435 383 SMAG--LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 383 s~~~--~~~e~i~~~~~~l~~~l~~~ 406 (407)
++++ .+++++++++++|+++++++
T Consensus 477 s~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 477 VISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8862 36789999999999987653
No 206
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.89 E-value=1e-21 Score=192.27 Aligned_cols=325 Identities=10% Similarity=0.021 Sum_probs=201.5
Q ss_pred cchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEE-eecCCcccHHHHHHHHHHhhcC---
Q 015435 50 VLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTT-VQCLSGTGSLRVGAEFLARHYH--- 125 (407)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~-~~t~g~t~a~~~~~~~~~~~~~--- 125 (407)
+++.+.+++.... ......|....+..++++.+.+++....+.+.+++++.. +.|+|+++++.+++..+ ..+
T Consensus 68 ~~~~v~~~l~~~~--~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~--~~~~~~ 143 (502)
T 3hbx_A 68 MEPECDKLIMSSI--NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAF--KRKWQN 143 (502)
T ss_dssp CCHHHHHHHHHTT--TCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHH--HHHHHH
T ss_pred CCHHHHHHHHHHh--ccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHH--HHHHhH
Confidence 4444444444433 112233433344555655555555332232211233221 22899999999884332 222
Q ss_pred -----CC-----eEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCC
Q 015435 126 -----QL-----TIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDP 195 (407)
Q Consensus 126 -----gd-----~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~ 195 (407)
|+ +|+++.++|..+...++..|++++.+|++ +.++.+|++++++.+. +++.+|++ ++|+||||.+.
T Consensus 144 ~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~--~~t~~v~~-~~~~n~tG~~~ 219 (502)
T 3hbx_A 144 KRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLS-EGYYVMDPQQAVDMVD--ENTICVAA-ILGSTLNGEFE 219 (502)
T ss_dssp HHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCB-TTBCSCCHHHHHHHCC--TTEEEEEE-EBSCTTTCCBC
T ss_pred HHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecC-CCcCcCCHHHHHHHHh--hCCEEEEE-ecCCCCCCccc
Confidence 66 89999999999999999999999999984 4447899999999997 45555555 89999999975
Q ss_pred CHHHHHHHHHHHHHc------Cceeeecccccccc----CCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCccee
Q 015435 196 TLEQWEQIRQLMRSK------GLLPFFDSAYQGFA----SGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGAL 265 (407)
Q Consensus 196 ~~~~l~~i~~~~~~~------~~~li~D~~y~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 265 (407)
++++|+++|+++ |+++++|++|.++. ....+.+ .....-.++..|.+|.++ .+.++|++
T Consensus 220 ---~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~-------~~~~~~D~v~~s~hK~l~-~p~g~G~~ 288 (502)
T 3hbx_A 220 ---DVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWD-------FRLPLVKSINVSGHKYGL-VYAGIGWV 288 (502)
T ss_dssp ---CHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS-------TTSTTEEEEEEETTTTTC-CCSSCEEE
T ss_pred ---CHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccc-------cCCCCceEEEECcccccC-CCCCeEEE
Confidence 477788889998 99999999998664 2111000 011234567778899764 56788998
Q ss_pred EEeecChhhHHHHHHHHhhhhh----ccc--CCC---ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015435 266 SIVCKTEDVASRVESQLKLVIR----PMY--SSP---PIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDAL 336 (407)
Q Consensus 266 ~~v~~~~~~~~~~~~~~~~~~~----~~~--~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 336 (407)
++.+++...........+.. ... .+. ...++.++...+.. +.+.+..++..++++++.+.|
T Consensus 289 --~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~--------~g~~~~~~~~~~~a~~l~~~L 358 (502)
T 3hbx_A 289 --IWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGH--------EGYRNVMENCRENMIVLREGL 358 (502)
T ss_dssp --EESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred --EEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 57655422111000000000 000 111 12223333332221 335677788888999999999
Q ss_pred HhcCCCCCcccccC--CceeEEec--C---CCHHHHHHhHhhccEEEc----CC---C----eEEecC-CCCCChhHHHH
Q 015435 337 SARGTPGDWSHIIK--QIGMFTFT--G---LNSEQVAFMTKEYHIYMT----SD---G----RISMAG-LSSKTVPHLTD 397 (407)
Q Consensus 337 ~~~~~~~~~~~~~~--~~~~~~~~--~---~~~~~~~~~l~~~gi~~~----~g---g----Ris~~~-~~~e~i~~~~~ 397 (407)
++.+. +.+..+ ..+++.|. + ++...+.+.|.++||.+. |. + ||+++. .++++++.+++
T Consensus 359 ~~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~ 435 (502)
T 3hbx_A 359 EKTER---FNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVI 435 (502)
T ss_dssp HTTTC---EEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHH
T ss_pred HhCCC---EEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHH
Confidence 98863 665543 55555443 2 455566666677899753 21 2 888875 57799999999
Q ss_pred HHHHHHHhh
Q 015435 398 AIHAAVTRM 406 (407)
Q Consensus 398 ~l~~~l~~~ 406 (407)
.|+++++.+
T Consensus 436 ~L~~~l~~l 444 (502)
T 3hbx_A 436 DIEKVMREL 444 (502)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988653
No 207
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.89 E-value=3.2e-21 Score=182.91 Aligned_cols=230 Identities=12% Similarity=0.113 Sum_probs=160.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee-cCCcccHHHHHHHHHHhhcCCCeEEecC-CCCCChHH-----
Q 015435 69 KEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ-CLSGTGSLRVGAEFLARHYHQLTIYIPQ-PTWGNHPK----- 141 (407)
Q Consensus 69 ~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~-t~g~t~a~~~~~~~~~~~~~gd~Vi~~~-p~y~~~~~----- 141 (407)
+.|+ ..+...+++.+++++ +. +..+++. ++||++|+.++ +...+.+||+|++++ |.|..+..
T Consensus 54 ~~y~-~~~~~~Le~~lA~l~-g~-------e~alv~p~~~sGt~Ai~~a--l~all~~GD~Vl~~~~~~y~~~~~~~~~~ 122 (409)
T 3jzl_A 54 YGYD-DEGRDTLERVYATVF-KT-------EAALVRPQIISGTHAISTV--LFGILRPDDELLYITGQPYDTLEEIVGIR 122 (409)
T ss_dssp TCTT-CHHHHHHHHHHHHHH-TC-------SEEEEETTSCSHHHHHHHH--HHHHCCTTCEEEECSSSCCTTHHHHHTSS
T ss_pred CCCC-hhHHHHHHHHHHHHh-CC-------CcEEEECCCccHHHHHHHH--HHHhcCCCCEEEEeCCCCcHhHHHHHhcc
Confidence 3453 346788999999988 53 3343322 67889999888 455588999999998 99999875
Q ss_pred -----HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecC----CCCCCCCCCCHHHHHHHHHHHHH--c
Q 015435 142 -----VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC----AHNPTGVDPTLEQWEQIRQLMRS--K 210 (407)
Q Consensus 142 -----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~----p~NPtG~~~~~~~l~~i~~~~~~--~ 210 (407)
.++..|++++.++.+ .++.+|+++++++++ ++++++++ .+ |+||||. ..++++|+++|++ |
T Consensus 123 g~~~~~l~~~G~~~~~v~~~--~~g~~d~e~l~~ai~--~~tklV~i-~~s~g~p~nptg~---v~~l~~I~~la~~~~~ 194 (409)
T 3jzl_A 123 KQGQGSLKDFHIGYSSVPLL--ENGDVDFPRIAKKMT--PKTKMIGI-QRSRGYADRPSFT---IEKIKEMIVFVKNINP 194 (409)
T ss_dssp SSSSSCTGGGTCEEEECCCC--TTSCCCHHHHHHHCC--TTEEEEEE-ECSCTTSSSCCCC---HHHHHHHHHHHHHHCT
T ss_pred cchhhHHHHcCCEEEEeCCC--CCCCcCHHHHHHhcc--CCCeEEEE-ECCCCCCCCCcCc---cccHHHHHHHHHhhCC
Confidence 446779999999883 357799999999987 56777777 66 9999998 6799999999999 9
Q ss_pred CceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCC-cceeEEeecChhhHHHHHHHHhhhhhcc
Q 015435 211 GLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGER-VGALSIVCKTEDVASRVESQLKLVIRPM 289 (407)
Q Consensus 211 ~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r-~G~~~~v~~~~~~~~~~~~~~~~~~~~~ 289 (407)
|+++++|++|..+.+... .. .....++++|+||.++.+|.. .||+ +.++++.+++...........
T Consensus 195 ~~~livD~a~~~~~~~~~---p~-------~~g~Div~~S~sK~lgg~~~~~GG~v---~~~~~li~~l~~~~~~~~~g~ 261 (409)
T 3jzl_A 195 EVIVFVDNCYGEFVEYQE---PP-------EVGADIIAGSLIKNPGGGLAKTGGYI---AGKEALVDLCGYRLTTPGIGR 261 (409)
T ss_dssp TCEEEEECTTCTTTSSCC---SG-------GGTCSEEEEETTSGGGTTTCSSCEEE---EECHHHHHHHHHHHSCTTTGG
T ss_pred CCEEEEeCCcccccccCC---cc-------ccCCeEEEECccccCCccCCceEEEE---EeCHHHHHHHHHHhccccccc
Confidence 999999999987764311 11 123458999999999876644 4666 445665555544322110001
Q ss_pred cCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435 290 YSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG 340 (407)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 340 (407)
..++....+.++...+ +....++++..+++.++.+.|++.|
T Consensus 262 ~~g~~~~~~~~~l~gl----------~~~~~r~~~~~~~a~~la~~L~~~g 302 (409)
T 3jzl_A 262 EAGASLYSLLEMYQGF----------FLAPHVTAQAIKGARFTAAMLAEFG 302 (409)
T ss_dssp GCCCCTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1122221122222222 2245667778889999999999988
No 208
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.88 E-value=4.6e-21 Score=183.70 Aligned_cols=164 Identities=20% Similarity=0.126 Sum_probs=126.1
Q ss_pred cccCCCCC--CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH--
Q 015435 68 VKEYLPIV--GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF-- 143 (407)
Q Consensus 68 ~~~y~~~~--g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~-- 143 (407)
.+.|.... ...++++++++++ +. ++.++ +++|++|+.++++. .+.+||+|+++.++|.++...+
T Consensus 49 ~~~y~~~~~~~~~~l~~~la~~~-g~-------~~~v~--~~sGt~A~~~~l~~--~~~~gd~vi~~~~~~~~~~~~~~~ 116 (421)
T 2ctz_A 49 GNIYSRIMNPTVDVLEKRLAALE-GG-------KAALA--TASGHAAQFLALTT--LAQAGDNIVSTPNLYGGTFNQFKV 116 (421)
T ss_dssp GGSCBTTBCHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHHHHH--HCCTTCEEEECSCCCHHHHHHHHT
T ss_pred CCcccCCCChHHHHHHHHHHHHh-CC-------CceEE--ecCHHHHHHHHHHH--HhCCCCEEEEeCCCchHHHHHHHH
Confidence 34455433 3688999999998 43 23455 56679999998533 3789999999999999887765
Q ss_pred --hhcCceeeEE-EeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc
Q 015435 144 --TLAGLSVKTY-RYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY 220 (407)
Q Consensus 144 --~~~G~~~~~v-~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y 220 (407)
+..|++++.+ +.. |++++++++. ++++++++ ++|+||||.+.+ +++|+++|++||+++|+|++|
T Consensus 117 ~~~~~g~~~~~~~~~~-------d~~~l~~~i~--~~~~~v~~-~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~ 183 (421)
T 2ctz_A 117 TLKRLGIEVRFTSREE-------RPEEFLALTD--EKTRAWWV-ESIGNPALNIPD---LEALAQAAREKGVALIVDNTF 183 (421)
T ss_dssp HHHHTTCEEEECCTTC-------CHHHHHHHCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGG
T ss_pred HHHHcCCEEEEECCCC-------CHHHHHHhhc--cCCeEEEE-ECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCc
Confidence 6789999888 651 7899999887 56677776 899999999887 888889999999999999999
Q ss_pred ccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeE
Q 015435 221 QGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALS 266 (407)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 266 (407)
..+.+.. ... . ....++++|++|.++.+|.|+|+++
T Consensus 184 ~~~g~~~---~~~------~-~~~Di~~~s~~K~l~~~g~~~G~~~ 219 (421)
T 2ctz_A 184 GMGGYLL---RPL------A-WGAALVTHSLTKWVGGHGAVIAGAI 219 (421)
T ss_dssp GGGGTSC---CGG------G-GTCSEEEEETTTTTTCSSCCCCEEE
T ss_pred ccccccC---Ccc------c-cCCeEEEECCcccccCCCCcEEEEE
Confidence 3344321 111 1 2346889999999999999999984
No 209
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.88 E-value=8.2e-22 Score=193.22 Aligned_cols=328 Identities=11% Similarity=0.067 Sum_probs=208.6
Q ss_pred chhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhh-------
Q 015435 51 LNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARH------- 123 (407)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~------- 123 (407)
+..+.+++.... ......|....+..++++.+++++....+.+...+.+++ |+|||+++..++..+...
T Consensus 109 ~~~~~e~l~~~~--~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~--t~ggt~a~~~al~~a~~~~~~~~~~ 184 (511)
T 3vp6_A 109 IGLAGEWLTSTA--NTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYSIMAARYKYFPEVKT 184 (511)
T ss_dssp HHHHHHHHHHHH--CCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHHh--ccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEE--CCchHHHHHHHHHHHHHHhhhhhhh
Confidence 334444444333 223456877778888888888887443333333468999 999999998875333221
Q ss_pred -----cCCCeEEecCCCCCChHHHHhhcCc---eeeEEEeecCCCCCcChhhHHHHHHcC---CCCcEEEEecCCCCCCC
Q 015435 124 -----YHQLTIYIPQPTWGNHPKVFTLAGL---SVKTYRYYDPATRGLNFQGLLEDLRAA---PSGAIVLLHACAHNPTG 192 (407)
Q Consensus 124 -----~~gd~Vi~~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~i~~~---~~~~~v~i~~~p~NPtG 192 (407)
.+++.|+++.++|.++...++.+|. +++.++. +.++.+|+++|++++.+. ...+.+++.+.++||||
T Consensus 185 ~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~--d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G 262 (511)
T 3vp6_A 185 KGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKC--NERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG 262 (511)
T ss_dssp HCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSC
T ss_pred cCcccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeec--CCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCc
Confidence 1467899999999999999999998 8999988 345789999999999732 11144455589999999
Q ss_pred CCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecCh
Q 015435 193 VDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTE 272 (407)
Q Consensus 193 ~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~ 272 (407)
.+ +++++|+++|++||+++++|++|........+.. .. +.......++..+++|.++.| ..+|++ +++++
T Consensus 263 ~v---d~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~-~~---~~g~~~aDsv~~~~hK~l~~p-~g~g~l--~~~~~ 332 (511)
T 3vp6_A 263 AF---DPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHR-HK---LNGIERANSVTWNPHKMMGVL-LQCSAI--LVKEK 332 (511)
T ss_dssp CB---CCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG-GG---GTTGGGCSEEEECTTSTTCCC-SCCEEE--EESST
T ss_pred cc---ccHHHHHHHHHHcCCEEEEEccchhhHhhChhhh-hh---ccCCccCCEEEECcccccCCC-cCeEEE--EEeCH
Confidence 96 5789999999999999999999987654221100 00 111112346668999998855 677888 67776
Q ss_pred hhHHHHHHHHhhhhhc-------------ccC----CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015435 273 DVASRVESQLKLVIRP-------------MYS----SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDA 335 (407)
Q Consensus 273 ~~~~~~~~~~~~~~~~-------------~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (407)
+...........+... +.. ....+...++...+. .+.++++.++..++.+++.+.
T Consensus 333 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g--------~~gl~~~~~~~~~~a~~l~~~ 404 (511)
T 3vp6_A 333 GILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG--------TVGFENQINKCLELAEYLYAK 404 (511)
T ss_dssp THHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHH
Confidence 6444332111111100 000 012233334433332 145778889999999999999
Q ss_pred HHhcCCCCCccccc---CCceeEEec----CCC---------------HHHHHHhHhhccEEEcC-----CC----eEEe
Q 015435 336 LSARGTPGDWSHII---KQIGMFTFT----GLN---------------SEQVAFMTKEYHIYMTS-----DG----RISM 384 (407)
Q Consensus 336 l~~~~~~~~~~~~~---~~~~~~~~~----~~~---------------~~~~~~~l~~~gi~~~~-----gg----Ris~ 384 (407)
|++.+. +++.. |..+++.|. +++ ...+.+.|.++|+.+.. ++ |+++
T Consensus 405 L~~~pg---~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~ 481 (511)
T 3vp6_A 405 IKNREE---FEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVI 481 (511)
T ss_dssp HHSCTT---EEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECC
T ss_pred HhcCCC---EEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEe
Confidence 988732 66554 556666553 110 11344444445643322 22 8887
Q ss_pred cC--CCCCChhHHHHHHHHHHHh
Q 015435 385 AG--LSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 385 ~~--~~~e~i~~~~~~l~~~l~~ 405 (407)
++ .+.++++.+++.|+++-+.
T Consensus 482 ~~~~~t~~di~~ll~~i~~~~~~ 504 (511)
T 3vp6_A 482 SNPAATQSDIDFLIEEIERLGQD 504 (511)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCHHHHHHHHHHHHHHHHh
Confidence 43 3668899999999887654
No 210
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.88 E-value=1.1e-21 Score=189.87 Aligned_cols=287 Identities=10% Similarity=0.076 Sum_probs=180.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEeecCCccc-HHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeec
Q 015435 79 DFNKLSAKLILGADSPAIKDNRVTTVQCLSGTG-SLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYD 157 (407)
Q Consensus 79 ~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~-a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~ 157 (407)
++++.+++++ +. +++ +++ |+|+|+ ++.+++..+....+|+.|+++++.|..+...++..|++++.++...
T Consensus 137 ~~~~~la~~~-g~-----~~~-~~~--t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~ 207 (456)
T 2z67_A 137 KILESFFKQL-GL-----NVH-AIA--TPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVL 207 (456)
T ss_dssp HHHHHHHHHT-TC-----CCE-EEE--ESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred HHHHHHHHHc-CC-----CCC-EEE--eCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEec
Confidence 3555566655 32 123 888 999994 5554432222222677899999999999999999999999988631
Q ss_pred -CCCCCcChhhHHHHH-Hc--CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhH
Q 015435 158 -PATRGLNFQGLLEDL-RA--APSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQ 233 (407)
Q Consensus 158 -~~~~~~d~~~l~~~i-~~--~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~ 233 (407)
+.++.+|++++++++ +. .+++.+ ++.++|+||||.+. ++++|+++|+++|+++++|++|..+..+- ...
T Consensus 208 ~~~~~~~d~~~l~~~i~~~~~~~~~~~-vv~~~~nn~tG~i~---~l~~I~~la~~~g~~v~vD~A~~~~~~g~---~~~ 280 (456)
T 2z67_A 208 DGDRVYVPVEDIENAIKKEIELGNRPC-VLSTLTFFPPRNSD---DIVEIAKICENYDIPHIINGAYAIQNNYY---LEK 280 (456)
T ss_dssp ETTEEECCHHHHHHHHHHHHHTTCCEE-EEEESSCCTTBCCC---CHHHHHHHHHHHTCCEEEECTTTTTCHHH---HHH
T ss_pred cCCCCCcCHHHHHHHHHHHhhCCCeEE-EEEeCCCCCCCCcC---CHHHHHHHHHHcCCcEEEECcchHHHHHh---hHH
Confidence 344689999999999 42 123344 44488999999975 57888888999999999999997665420 001
Q ss_pred HHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHh
Q 015435 234 SVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKE 313 (407)
Q Consensus 234 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 313 (407)
....+ .. ...+++.|++|.++ .+.++|++ +++++++.+.+ ...........+.+++.++...+.
T Consensus 281 ~~~~~-~~-~~D~~~~s~hK~~~-~p~g~G~l--~~~~~~~~~~l----~~~~~g~~~~~~~~~~~aal~~l~------- 344 (456)
T 2z67_A 281 LKKAF-KY-RVDAVVSSSDKNLL-TPIGGGLV--YSTDAEFIKEI----SLSYPGRASATPVVNTLVSLLSMG------- 344 (456)
T ss_dssp HHHHH-TS-CCSEEEEEHHHHHC-CCSSCEEE--EESCHHHHHHH----HTTSCSCBCSHHHHHHHHHHHHHH-------
T ss_pred HHHhh-CC-CCCEEEEcCCCCcC-CCCCeEEE--EEcCHHHHhhc----CcCCCCCCCCCHHHHHHHHHHHHH-------
Confidence 11111 11 33467889999655 56889999 57666554443 111111111122333444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCcccccCCceeEEe-cCCC--HHHHHHhHhhccE---EEc------
Q 015435 314 WTLELKAMADRIISMRQQLFDALSAR----GTPGDWSHIIKQIGMFTF-TGLN--SEQVAFMTKEYHI---YMT------ 377 (407)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~l~~~gi---~~~------ 377 (407)
...+++.+++..++++++.+.|++. | ..+..+. +++.+ +..+ ...+.+.|.++|| .+.
T Consensus 345 -~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g----~~v~~~~-~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g~f 418 (456)
T 2z67_A 345 -SKNYLELVKNQKNSKKLLDELLNDLSKKTG----GKFLDVE-SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHF 418 (456)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----CCBCCCC-CSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcccccC----CEecCCC-CeEEEEEecccHHHHHHHHHHHcCCCcceEEeecCcc
Confidence 1346777888999999999999887 5 4444444 33332 1112 2334444444554 343
Q ss_pred --------CCC--eEEecC-CCCCChhHHHHHHHHHH
Q 015435 378 --------SDG--RISMAG-LSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 378 --------~gg--Ris~~~-~~~e~i~~~~~~l~~~l 403 (407)
+.+ |++++. .+++++++++++|++++
T Consensus 419 ~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 419 GNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 223 888763 48899999999998764
No 211
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.88 E-value=2.7e-21 Score=184.92 Aligned_cols=230 Identities=13% Similarity=0.109 Sum_probs=157.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecC-CCCCChHHHH----------h
Q 015435 76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQ-PTWGNHPKVF----------T 144 (407)
Q Consensus 76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~-p~y~~~~~~~----------~ 144 (407)
+..++++.+++++ +.... ..++++ + ||++|+..+ +...+.+||+|+++. |.|..+...+ +
T Consensus 66 ~~~~l~~~la~~~-g~~~~---~~~i~~--~-sGt~Ai~~a--l~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~ 136 (431)
T 3ht4_A 66 GRDTLEKVYADVF-GAEAG---LVRPQI--I-SGTHAISTA--LFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFK 136 (431)
T ss_dssp HHHHHHHHHHHHT-TCSEE---CCBTTS--C-SHHHHHHHH--HHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSG
T ss_pred hHHHHHHHHHHHh-CCCcc---ccccee--e-CHHHHHHHH--HHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHH
Confidence 4566777777766 43211 123335 5 778999998 455578999999998 9999988655 4
Q ss_pred hcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHH--cCceeeecccccc
Q 015435 145 LAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRS--KGLLPFFDSAYQG 222 (407)
Q Consensus 145 ~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~--~~~~li~D~~y~~ 222 (407)
..|.+++.++.+ .++.+|++++++++. +++++|++.++||||||..++.+++++|+++|++ +|+++|+|++|..
T Consensus 137 ~~G~~~~~v~~~--~~~~~d~e~l~~~l~--~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~ 212 (431)
T 3ht4_A 137 EYNIGYNAVPLT--EGGLVDFEAVAAAIH--SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGE 212 (431)
T ss_dssp GGTCEEEECCBC--TTSSBCHHHHHHHCC--TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCT
T ss_pred HcCCEEEEeCCC--CCCCcCHHHHHhhcC--CCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChh
Confidence 579999999983 347899999999997 5678888866899999999999999999999999 9999999999998
Q ss_pred ccCCCCCchhHHHHHHHHcCCcEEEEEecCccccc-cCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHH
Q 015435 223 FASGSLDADAQSVRMFVADGGECLVAQSYAKNMGL-YGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIV 301 (407)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (407)
+.+... .. . ....++++|+||.+|. .+...||+ ++ ++++.+.+.............+++...+.++
T Consensus 213 ~~~~~~---~~------~-~g~Di~~~S~sK~lgg~~~~~GG~v--~~-~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~ 279 (431)
T 3ht4_A 213 FIEEQE---PC------H-VGADLMAGSLIKNPGGGIVKTGGYI--VG-KEQYVEACAYRLTSPGIGAEAGASLYSLQEM 279 (431)
T ss_dssp TSSSCC---GG------G-TTCSEEEEETTSGGGTTTCSSCEEE--EE-CHHHHHHHHHHHSCTTTTTSCSCCCSCSHHH
T ss_pred hccCCC---cc------c-cCCeEEEcCccccCCCCCCCceEEE--Ee-cHHHHHHHHHHhccCCcccccCccHHHHHHH
Confidence 876421 11 1 1235899999999763 22344787 45 4555444443222111011112211112222
Q ss_pred HHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015435 302 ATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGT 341 (407)
Q Consensus 302 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 341 (407)
...+ +.....+++..++++++.+.|++.|.
T Consensus 280 ~~~l----------~~~~~~~~~~~~~a~~l~~~L~~~g~ 309 (431)
T 3ht4_A 280 YQGF----------FLAPHVAGQALKGAIFTAAFLEKLGM 309 (431)
T ss_dssp HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhHh----------hhHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 2222 22445667788899999999998883
No 212
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.88 E-value=5.6e-21 Score=182.07 Aligned_cols=213 Identities=14% Similarity=0.093 Sum_probs=149.7
Q ss_pred CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCce
Q 015435 74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGLS 149 (407)
Q Consensus 74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~~ 149 (407)
.....++++.+++++ +. +++++ ++||++|+.+++ ...+.+||+|+++.+.|.+....+ +..|++
T Consensus 81 ~p~~~~le~~lA~l~-g~-------~~~i~--~ssGt~Ai~~al--~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~ 148 (415)
T 2fq6_A 81 TLTHFSLQQAMCELE-GG-------AGCVL--FPCGAAAVANSI--LAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVT 148 (415)
T ss_dssp CHHHHHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHHH--HTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCE
T ss_pred CchHHHHHHHHHHHh-CC-------CeEEE--eCCHHHHHHHHH--HHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcE
Confidence 344778999999988 43 46777 889999999883 445789999999999998777554 467999
Q ss_pred eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHH--cCceeeeccccccccCCC
Q 015435 150 VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRS--KGLLPFFDSAYQGFASGS 227 (407)
Q Consensus 150 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~--~~~~li~D~~y~~~~~~~ 227 (407)
++.++. .|+++++++++ +++++|++ ++|+||||.+.+ +++|+++|++ +|+++|+|++|+......
T Consensus 149 v~~v~~-------~d~~~le~ai~--~~tklV~~-e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~~ 215 (415)
T 2fq6_A 149 TSWFDP-------LIGADIVKHLQ--PNTKIVFL-ESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLFK 215 (415)
T ss_dssp EEEECT-------TCGGGGGGGCC--TTEEEEEE-ESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSSC
T ss_pred EEEECC-------CCHHHHHHhhc--cCCcEEEE-ECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccCC
Confidence 988864 27889998887 56777777 899999999885 7888888999 999999999987554321
Q ss_pred CCchhHHHHHHHHcCCcEEEEEecCccccccCCCc-ceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhc
Q 015435 228 LDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV-GALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILK 306 (407)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 306 (407)
. + . ....++++|++|.++.+|.++ ||+ +++ +++.+.+.. .........+...+..+...+
T Consensus 216 ----p-----~-~-~g~Div~~S~sK~lg~~g~~~~G~l--~~~-~~~~~~l~~----~~~~~G~~~~~~~a~~~~~~l- 276 (415)
T 2fq6_A 216 ----A-----L-D-FGIDVSIQAATKYLVGHSDAMIGTA--VCN-ARCWEQLRE----NAYLMGQMVDADTAYITSRGL- 276 (415)
T ss_dssp ----G-----G-G-GTCSEEEEETTTTTTCSSSCCCEEE--EEC-TTTHHHHHH----HHHHTTCCCCHHHHHHHHHHH-
T ss_pred ----c-----c-c-cCCeEEEEeCccccCCCCCceEEEE--EeC-HHHHHHHHH----HHHhcCCCCCHHHHHHHHhhh-
Confidence 1 1 1 235688999999999888764 777 454 455444433 222222233433333332222
Q ss_pred ChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015435 307 DSTMYKEWTLELKAMADRIISMRQQLFDALSAR 339 (407)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 339 (407)
+.+....++..++.+.+.+.|++.
T Consensus 277 ---------~~l~~r~~~~~~n~~~l~~~L~~~ 300 (415)
T 2fq6_A 277 ---------RTLGVRLRQHHESSLKVAEWLAEH 300 (415)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHcC
Confidence 223444555667778888888765
No 213
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.88 E-value=1.3e-21 Score=191.73 Aligned_cols=329 Identities=12% Similarity=0.103 Sum_probs=204.0
Q ss_pred cccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHH--hh--
Q 015435 48 PLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA--RH-- 123 (407)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~--~~-- 123 (407)
+.++.++.++..... +. ..+.|.......++.+.+.+++....+.+ ..+++++ |+|||+++..++..++ .+
T Consensus 111 ~~~~~v~~~~~~~~~-n~-~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~--t~ggt~a~~~al~~ar~~~~~~ 185 (497)
T 2qma_A 111 PLMPAVAAEAMIAAL-NQ-SMDSWDQASSATYVEQKVVNWLCDKYDLS-EKADGIF--TSGGTQSNQMGLMLARDWIADK 185 (497)
T ss_dssp CBHHHHHHHHHHHHH-CC-CTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTCEEEE--ESSHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhh-cc-cccchhhChHHHHHHHHHHHHHHHHhCCC-CCCCeEE--cCCchHHHHHHHHHHHHHHHHh
Confidence 445566666655554 22 33445444455566555444442222211 1268999 9999999999865432 12
Q ss_pred -------cC------CC-eEEecCCCCCChHHHHhhcCc---eeeEEEeecCCCCCcChhhHHHHHHcC--CCC-cEEEE
Q 015435 124 -------YH------QL-TIYIPQPTWGNHPKVFTLAGL---SVKTYRYYDPATRGLNFQGLLEDLRAA--PSG-AIVLL 183 (407)
Q Consensus 124 -------~~------gd-~Vi~~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~i~~~--~~~-~~v~i 183 (407)
.+ |+ .|+++.+.|..+...+...|. +++.+|. +.++.+|+++|++.+.+. ..+ +.+++
T Consensus 186 ~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~~~~~~~vv 263 (497)
T 2qma_A 186 LSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDA--NADGTMDITKLDEVIAQAKAEGLIPFAIV 263 (497)
T ss_dssp HHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSSBCGGGHHHHHHHHHHTTCEEEEEE
T ss_pred hcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEec--CCCCcCCHHHHHHHHHHHHHCCCcceEEE
Confidence 12 46 799999999999999888876 7899998 345789999999998732 123 33444
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcc
Q 015435 184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVG 263 (407)
Q Consensus 184 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 263 (407)
.+.++||||.+ +++++|+++|++||+++++|++|..+.... + +.. .+.......+++.|++|.++.| .++|
T Consensus 264 ~~~~~~~tG~~---~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~---~-~~~-~~~gi~~~D~i~~s~hK~l~~p-~~~G 334 (497)
T 2qma_A 264 GTAGTTDHGAI---DDLDFIADMAVKHDMWMHVDGAYGGALILS---S-HKS-RLKGVERAHSISVDFHKLFYQT-ISCG 334 (497)
T ss_dssp EEBSCTTTCCB---CCHHHHHHHHHHHTCEEEEEETTGGGGGGS---T-TGG-GGTTGGGCSEEEEETTTTTCCC-SSCE
T ss_pred EcCCCCCCCCC---CCHHHHHHHHHHcCCEEEEehhhhHHHHhC---c-chH-hhcCcccCCEEEEcchhccCCC-cceE
Confidence 48899999994 468889999999999999999998776532 1 100 0111112236778999988865 6999
Q ss_pred eeEEeecChhhHHHHHHHHhhhhhccc-CCC-------------ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH
Q 015435 264 ALSIVCKTEDVASRVESQLKLVIRPMY-SSP-------------PIHGASIVATILKDSTMYKEWTLELKAMADRIISMR 329 (407)
Q Consensus 264 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (407)
++ +++++...+.+... ..+..... ..+ ..+.+.++...+.. +.+++..++..+++
T Consensus 335 ~l--~~~~~~~~~~~~~~-~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~--------~g~~~~~~~~~~~a 403 (497)
T 2qma_A 335 AL--LVNDKSNFKFLLHH-ADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGP--------KALGDMYDHLLAQT 403 (497)
T ss_dssp EE--EESCGGGGGGGCC---------------------CCSCCCTHHHHHHHHHHTCH--------HHHHHHHHHHHHHH
T ss_pred EE--EEeCHHHHHHhcCC-chhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCH--------HHHHHHHHHHHHHH
Confidence 99 67766532221100 00000000 001 11223333333321 34667778888999
Q ss_pred HHHHHHHHhcCCCCCcccc-cCCceeEEec--CC--CH----HHHHHhHhhccEEEcCC----C----eEEec--CCCCC
Q 015435 330 QQLFDALSARGTPGDWSHI-IKQIGMFTFT--GL--NS----EQVAFMTKEYHIYMTSD----G----RISMA--GLSSK 390 (407)
Q Consensus 330 ~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~--~~--~~----~~~~~~l~~~gi~~~~g----g----Ris~~--~~~~e 390 (407)
+++.+.|++.+. +++. .+..+++.|. +. .. +.+...+.+.|+.+.++ | ||+++ ..+++
T Consensus 404 ~~l~~~L~~~~~---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~e 480 (497)
T 2qma_A 404 LEVADMIRTNDQ---FELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTS 480 (497)
T ss_dssp HHHHHHHHTCTT---EEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHH
T ss_pred HHHHHHHhhCCC---eEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHH
Confidence 999999998642 6653 4556655543 21 11 22334445578877542 2 99873 24779
Q ss_pred ChhHHHHHHHHHHHhh
Q 015435 391 TVPHLTDAIHAAVTRM 406 (407)
Q Consensus 391 ~i~~~~~~l~~~l~~~ 406 (407)
++++++++|+++++++
T Consensus 481 di~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 481 DFESLLSKINMLAVEL 496 (497)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 214
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.88 E-value=3.3e-22 Score=192.92 Aligned_cols=285 Identities=12% Similarity=0.035 Sum_probs=178.0
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCcee
Q 015435 71 YLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSV 150 (407)
Q Consensus 71 y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~ 150 (407)
|.+.....++++.+++ + +. ++++++ |+|+|+++.+++ ...+.+||+|+++.|+|..+...+...|+++
T Consensus 53 ~~~~~~~~~~~~~la~-~-g~------~~~v~~--~~G~t~a~~~~~--~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~ 120 (446)
T 2x3l_A 53 HHPEEVILKSMKQVEK-H-SD------YDGYFL--VNGTTSGILSVI--QSFSQKKGDILMARNVHKSVLHALDISQQEG 120 (446)
T ss_dssp TSCSSHHHHHHHHHCS-C-TT------EEEEEE--SSHHHHHHHHHH--HTTTTSSSCEEECTTCCHHHHHHHHHHTCCE
T ss_pred cCcchHHHHHHHHHHh-c-CC------CceEEE--eCCHHHHHHHHH--HHhcCCCCEEEEecCccHHHHHHHHHcCCeE
Confidence 3455567788888887 5 43 157888 999999999994 4447899999999999999999999999999
Q ss_pred eEEEeecCCC----CCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccccc-ccC
Q 015435 151 KTYRYYDPAT----RGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQG-FAS 225 (407)
Q Consensus 151 ~~v~~~~~~~----~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~-~~~ 225 (407)
+.++...+.. +.+|++++ +. ++++++++ ++ +|+||.+.+ +++|+++|++||+++|+|++|.. +.+
T Consensus 121 ~~v~~~~~~~~~~~~~~d~~~l---~~--~~~~~v~~-~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f 190 (446)
T 2x3l_A 121 HFIETHQSPLTNHYNKVNLSRL---NN--DGHKLVVL-TY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGL 190 (446)
T ss_dssp EECEEEECTTTSSEEEEEC------------CCEEEE-ES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTS
T ss_pred EEEeCeeccccCcCCCCCHHHH---cC--CCceEEEE-EC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhcc
Confidence 9998732222 46788877 33 56777777 55 566999987 77888889999999999999986 333
Q ss_pred CCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhh-HHHHHHHHhhhhhcccCCCChhHHHHHHHH
Q 015435 226 GSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDV-ASRVESQLKLVIRPMYSSPPIHGASIVATI 304 (407)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (407)
.+. ..+. ... ...+++.|+||.++ ++.++||+ +++++.+ ...+.... ......+++...+.++..+
T Consensus 191 ~~~---~~~~---~~~-g~Di~~~S~~K~l~-~~~g~g~l--~~~~~~i~~~~~~~~~---~~~~~~s~~~~~~aal~~a 257 (446)
T 2x3l_A 191 QGF---PDST---LNY-QADYVVQSFHKTLP-ALTMGSVL--YIHKNAPYRENIIEYL---SYFQTSSPSYLIMASLESA 257 (446)
T ss_dssp TTS---CCCG---GGG-TCSEEEECHHHHSS-SCTTCEEE--EEETTCTTHHHHHHHH---HHHSCSSCCHHHHHHHHHH
T ss_pred CCC---CCCh---HHc-CCCEEEECCccccc-cccccEEE--EEcCCcCCHHHHHHHH---HHHcCCCchHHHHHHHHHH
Confidence 321 1111 111 23488999999654 33457998 5654321 11222211 1112224444333333222
Q ss_pred hcChhhHHhHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec---CCCHHHHHHhHhhccEEEc-CC
Q 015435 305 LKDSTMYKEWTLE-LKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT---GLNSEQVAFMTKEYHIYMT-SD 379 (407)
Q Consensus 305 l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~-~g 379 (407)
++.. ... .++..++.+++++++.+. + +.+..+..+.+.|+ +.+...+.+.|.++||.+. ++
T Consensus 258 ~~~l------~~~g~~~~~~~~~~l~~~l~~~----g----~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g 323 (446)
T 2x3l_A 258 AQFY------KTYDSTLFFAKRAQLIECLENK----G----FEMLQVDDPLKLLIKYEGFTGHDIQNWFMNAHIYLELAD 323 (446)
T ss_dssp HHHH------HHCCCHHHHHHHHHHHHHHHHH----T----CEEEECSSTTEEEEECTTSCHHHHHHHHHHTTEEESEEC
T ss_pred HHHH------HHhCHHHHHHHHHHHHHHHHHc----C----CEECcCCCCeEEEEEeCCcCHHHHHHHHHHCCCEEEecC
Confidence 2110 111 112445555555665554 4 45444333334444 4466666655555699998 55
Q ss_pred C---eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435 380 G---RISMAG-LSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 380 g---Ris~~~-~~~e~i~~~~~~l~~~l~~ 405 (407)
. |++++. .+++++ +++++|++++++
T Consensus 324 ~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 324 DYQALAILPLWHHDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp SSCEEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred CCEEEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence 3 998874 478999 999999998764
No 215
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.88 E-value=7.3e-21 Score=181.05 Aligned_cols=228 Identities=15% Similarity=0.147 Sum_probs=157.0
Q ss_pred CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecC-CCCCChHH-----------
Q 015435 74 IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQ-PTWGNHPK----------- 141 (407)
Q Consensus 74 ~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~-p~y~~~~~----------- 141 (407)
..+...+++.+++++ +.. ..+++.+++||++|+.++ +...+.+||+|++++ |.|..+..
T Consensus 72 ~~~~~~Le~~lA~l~-g~e------~alv~p~~~sGt~Ai~~a--l~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~ 142 (427)
T 3i16_A 72 DIGRDSLDAVYARVF-NTE------SALVRPHFVNGTHALGAA--LFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMG 142 (427)
T ss_dssp CHHHHHHHHHHHHHH-TCS------EEEEETTCCSHHHHHHHH--HHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSC
T ss_pred HHHHHHHHHHHHHHh-CCc------ceEEeCCCccHHHHHHHH--HHHHhCCCCEEEEeCCCccHHHHHHHhccccchHH
Confidence 346788999999988 531 223211157889999888 455688999999999 99998874
Q ss_pred HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecC----CCCCCCCCCCHHHHHHHHHHHHH--cCceee
Q 015435 142 VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC----AHNPTGVDPTLEQWEQIRQLMRS--KGLLPF 215 (407)
Q Consensus 142 ~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~----p~NPtG~~~~~~~l~~i~~~~~~--~~~~li 215 (407)
.++..|++++.++.+ .++.+|++++++++.+.++++++++ ++ |+||||. ..++++|+++|++ +|++++
T Consensus 143 ~l~~~G~~~~~v~~~--~~g~~D~e~l~~~l~~~~~tklV~i-~~s~~~p~nptg~---i~dl~~i~~la~~~~~g~~li 216 (427)
T 3i16_A 143 SLKEFGINYKQVDLK--EDGKPNLEEIEKVLKEDESITLVHI-QRSTGYGWRRALL---IEDIKSIVDCVKNIRKDIICF 216 (427)
T ss_dssp CTGGGTCEEEECCCC--TTSSCCHHHHHHHHHTCTTEEEEEE-ECSCCSSSSCCCC---HHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHcCCEEEEecCc--cCCCcCHHHHHHHhhCCCCCEEEEE-EcCCCCCCCCccc---HHHHHHHHHHHHHhCCCCEEE
Confidence 445679999999883 3467999999999984345677777 56 8888887 7899999999999 999999
Q ss_pred eccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEeecChhhHHHHHHHHhhhhhcccCCCC
Q 015435 216 FDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPP 294 (407)
Q Consensus 216 ~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (407)
+|++|..+.+... .. .....++++|+||.++.+| .+.||+ ++ ++++.+++...+.... ......+
T Consensus 217 vD~a~~~~~~~~~---p~-------~~gaDiv~~S~sK~lgg~g~~~gG~i--~~-~~~li~~l~~~~~~~~-~g~~~~~ 282 (427)
T 3i16_A 217 VDNCYGEFMDTKE---PT-------DVGADLIAGSLIKNIGGGIAPTGGYL--AG-TKDCIEKTSYRLTVPG-IGGECGS 282 (427)
T ss_dssp EECTTTTTSSSSC---GG-------GGTCSEEEEETTSGGGTTTCCSCEEE--EE-CHHHHHHHHHHHSCTT-TGGGCCC
T ss_pred EECCCccccccCC---cc-------ccCCeEEEecCcccCCCCCCceEEEE--EE-CHHHHHHHHHhcccCc-cCccCCc
Confidence 9999987774311 11 1234588999999998766 456777 44 4555554443221110 0011112
Q ss_pred hhH-HHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435 295 IHG-ASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG 340 (407)
Q Consensus 295 ~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 340 (407)
... ...+...+ +....+++++.+++.++.+.|++.|
T Consensus 283 ~~~~a~~~l~gl----------~~~~~r~~~~~~~a~~la~~L~~~g 319 (427)
T 3i16_A 283 TFGVVRSMYQGL----------FLAPHISMEALKGAILCSRIMELAG 319 (427)
T ss_dssp CTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 122 22222221 2345677888899999999999988
No 216
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.88 E-value=1.4e-20 Score=179.19 Aligned_cols=226 Identities=12% Similarity=0.112 Sum_probs=155.9
Q ss_pred CCcHHHHHHHHHHHhCCCCCCCCCCceEEe-ecCCcccHHHHHHHHHHhhcCCCeEEecC-CCCCChH-----------H
Q 015435 75 VGLVDFNKLSAKLILGADSPAIKDNRVTTV-QCLSGTGSLRVGAEFLARHYHQLTIYIPQ-PTWGNHP-----------K 141 (407)
Q Consensus 75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~-~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~-p~y~~~~-----------~ 141 (407)
.|...+++.+++++ +. +..++. +++||++|+.++ +...+.+||+|++++ |.|..+. .
T Consensus 74 ~g~~~Le~~lA~l~-g~-------e~alv~p~~~sGt~A~~~a--l~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~ 143 (427)
T 3hvy_A 74 IGRDSLDRVYANIF-NT-------ESAFVRPHFVNGTHAIGAA--LFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVG 143 (427)
T ss_dssp HHHHHHHHHHHHHH-TC-------SEEEEETTCCSHHHHHHHH--HHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSC
T ss_pred hhHHHHHHHHHHHh-CC-------CceEEeCCCCcHHHHHHHH--HHHhcCCCCEEEEeCCCCchhHHHHhccccchhhh
Confidence 46889999999988 53 333221 157889999888 455688999999999 9998876 3
Q ss_pred HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecC----CCCCCCCCCCHHHHHHHHHHHHH--cCceee
Q 015435 142 VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHAC----AHNPTGVDPTLEQWEQIRQLMRS--KGLLPF 215 (407)
Q Consensus 142 ~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~----p~NPtG~~~~~~~l~~i~~~~~~--~~~~li 215 (407)
.++..|++++.++. +++.+|++++++++.+.+++++|++ ++ |+||||. ..++++|+++|++ +|++++
T Consensus 144 ~l~~~G~~~~~v~~---~~~~~d~e~l~~~i~~~~~tklV~i-~~s~gyp~nptg~---v~dl~~i~~ia~~~~~g~~li 216 (427)
T 3hvy_A 144 SLREYGVKYKMVDL---KDGKVDINTVKEELKKDDSIKLIHI-QRSTGYGWRKSLR---IAEIAEIIKSIREVNENVIVF 216 (427)
T ss_dssp CTGGGTCEEEECCC---BTTBCCHHHHHHHHHHCTTEEEEEE-ESSCCSSSSCCCC---HHHHHHHHHHHHHHCSSSEEE
T ss_pred HHHHcCCEEEEecC---CCCCcCHHHHHHHhhCCCCCEEEEE-ECCCCCCCCcccc---HHHHHHHHHHHHHhCCCCEEE
Confidence 45567999999987 2467999999999974345677777 55 8888887 6899999999999 899999
Q ss_pred eccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCC-CcceeEEeecChhhHHHHHHHHhhhhhcccCCCC
Q 015435 216 FDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGE-RVGALSIVCKTEDVASRVESQLKLVIRPMYSSPP 294 (407)
Q Consensus 216 ~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (407)
+|++|..+.+... .. . ....++++|+||.++.+|. +.|++ +.++++.+++........-....+++
T Consensus 217 vD~a~~~~~~~~~---p~------~-~gaDiv~~S~sK~lgg~g~~~GG~i---~~~~~li~~l~~~~~~~~~g~~~~~~ 283 (427)
T 3hvy_A 217 VDNCYGEFVEEKE---PT------D-VGADIIAGSLIKNIGGGIATTGGYI---AGKEEYVTQATFRVTVPGIGGECGST 283 (427)
T ss_dssp EECTTCTTTSSSC---GG------G-GTCSEEEEETTSGGGTTTCCSCEEE---EECHHHHHHHHHHHSCTTTGGGCCCC
T ss_pred EECCccccccCCC---Cc------c-cCCeEEEECCcccccccccceEEEE---EECHHHHHHHHHHhhcCCcccccCCC
Confidence 9999987774311 11 1 1345899999999986664 45666 44566555544422111000111221
Q ss_pred hhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015435 295 IHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARG 340 (407)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 340 (407)
...+..+...+ +....++++..+++.++.+.|++.|
T Consensus 284 ~~~a~~~~~gl----------~~~~~r~~~~~~~a~~la~~L~~~g 319 (427)
T 3hvy_A 284 FGVMRSLYEGL----------FMAPHVTIEAVKGAVFCARIMELAG 319 (427)
T ss_dssp TTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhH----------hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 21122322222 2244667788889999999999988
No 217
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.87 E-value=3.3e-22 Score=190.51 Aligned_cols=280 Identities=15% Similarity=0.095 Sum_probs=177.1
Q ss_pred cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC-hHHHHhhc--CceeeEE
Q 015435 77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN-HPKVFTLA--GLSVKTY 153 (407)
Q Consensus 77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~-~~~~~~~~--G~~~~~v 153 (407)
..++++.+++++ +.. ++++|+++ |+|+|+++.+++ ...+.+| .+++..+.|.. ....+... |.+++.+
T Consensus 80 ~~~~~~~la~~~-g~~----~~~~i~~~-t~g~t~al~~~~--~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v 150 (398)
T 2fyf_A 80 VGRVRSGLAELF-SLP----DGYEVILG-NGGATAFWDAAA--FGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIII 150 (398)
T ss_dssp HHHHHHHHHHHT-TCC----TTCEEEEE-ETCHHHHHHHHH--HHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEE
T ss_pred HHHHHHHHHHHh-CCC----CCceEEEe-CCchhHHHHHHH--HHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEE
Confidence 567888888877 432 12455431 899999999994 4346676 22232222311 12234444 8889889
Q ss_pred EeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhH
Q 015435 154 RYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQ 233 (407)
Q Consensus 154 ~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~ 233 (407)
+.+ .+...+.+ +. ++++++++ ++|+||||.+++.+++.++ +|+++|+|++|..+... . +
T Consensus 151 ~~~--~g~~~~~~-----i~--~~~~~v~~-~~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~~-~--~-- 209 (398)
T 2fyf_A 151 TSD--PGSAPEPQ-----TD--PSVDVIAW-AHNETSTGVAVAVRRPEGS------DDALVVIDATSGAGGLP-V--D-- 209 (398)
T ss_dssp ECC--TTCCCCCC-----CC--TTCSEEEE-ESEETTTTEECCCCCCTTC------C-CEEEEECTTTTTTSC-C--C--
T ss_pred ecC--CCCCCCcc-----cc--CCCCEEEE-eCcCCCcceecchHHhhhh------cCCeEEEEeccccCCcc-c--C--
Confidence 883 33333321 23 56778777 7899999999987776665 89999999999765532 1 1
Q ss_pred HHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHH---------hhh----h----hcccCCCChh
Q 015435 234 SVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQL---------KLV----I----RPMYSSPPIH 296 (407)
Q Consensus 234 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~---------~~~----~----~~~~~~~~~~ 296 (407)
+ . +..+++.|+||.++++| ++||+ +++ +++.+++.... ... . .....+++..
T Consensus 210 ----~-~--~~di~~~s~sK~~~~~g-g~g~l--~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 278 (398)
T 2fyf_A 210 ----I-A--ETDAYYFAPQKNFASDG-GLWLA--IMS-PAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIA 278 (398)
T ss_dssp ----G-G--GCSEEEECTTSTTCSCS-SEEEE--EEC-HHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHH
T ss_pred ----c-c--cCcEEEEecCcccCCCC-ceEEE--EEC-HHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHH
Confidence 1 1 13478899999999775 58988 454 44444432210 000 0 1122355666
Q ss_pred HHHHHHHHhcChhhHHhHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCCccccc--C--CceeEEecC----CCHHHHH
Q 015435 297 GASIVATILKDSTMYKEWTLE--LKAMADRIISMRQQLFDALSARGTPGDWSHII--K--QIGMFTFTG----LNSEQVA 366 (407)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~--~~~~~~~~~----~~~~~~~ 366 (407)
++.++..+++.. .+. +++.+++++++++++.+.|++.+. +.+.. + .++++.|+. .+.+.+.
T Consensus 279 ~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 349 (398)
T 2fyf_A 279 TLALLAEQIDWL------VGNGGLDWAVKRTADSSQRLYSWAQERPY---TTPFVTDPGLRSQVVGTIDFVDDVDAGTVA 349 (398)
T ss_dssp HHHHHHHHHHHH------HHHTSHHHHHHHHHHHHHHHHHHHHHSTT---EEESCCSGGGBCSSEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHHHHH------HHccCHHHHHHHHHHHHHHHHHHHHHcCC---ceeccCChhhcCCcEEEEECCCCCCHHHHH
Confidence 666666666422 122 677888999999999999998731 55542 3 345455543 3555555
Q ss_pred HhHhhccEEEcCC------C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 367 FMTKEYHIYMTSD------G--RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 367 ~~l~~~gi~~~~g------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
+.|.++||.+.++ + ||+++. .+++++++++++|+++++++
T Consensus 350 ~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~~ 398 (398)
T 2fyf_A 350 KILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVERL 398 (398)
T ss_dssp HHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHhC
Confidence 5555569999764 2 999874 47899999999999988763
No 218
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.87 E-value=1.4e-21 Score=186.55 Aligned_cols=333 Identities=11% Similarity=0.029 Sum_probs=209.4
Q ss_pred hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec
Q 015435 27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC 106 (407)
Q Consensus 27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t 106 (407)
...++++||+..|....+.| ..++++++++.+++. .. .+...+..-..++.+.+++.+.+ .+.+.+ +
T Consensus 83 D~dG~~ylD~~~g~~~~~lG-H~hp~v~~Av~~q~~--~~-~~~~~~~~~~~~lae~l~~~~p~-------~~~v~f--~ 149 (454)
T 4ao9_A 83 DADGHRYADFIAEYTAGVYG-HSAPEIRDAVIEAMQ--GG-INLTGHNLLEGRLARLICERFPQ-------IEQLRF--T 149 (454)
T ss_dssp ETTCCEEEESSGGGGTTTTC-SCCHHHHHHHHHHHH--TC-SCCCSEESSHHHHHHHHHHHSTT-------CSEEEE--E
T ss_pred ECCCCEEEEccccHHhhccc-CCCHHHHHHHHHHHh--cC-CCccCCcHHHHHHHHHHHHhCCC-------CCEEEE--e
Confidence 34678999999887655666 667788888888886 21 22122344566788888887733 278999 9
Q ss_pred CCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhc----CceeeEEEeecCCCCCcChhhHHHHHHcCC-CCcEE
Q 015435 107 LSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLA----GLSVKTYRYYDPATRGLNFQGLLEDLRAAP-SGAIV 181 (407)
Q Consensus 107 ~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~----G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~-~~~~v 181 (407)
+||++|++.++++.+.....++|+...-+|.+........ +........ +. -|++.+++.+.+.. +..++
T Consensus 150 ~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~--p~---nd~~~l~~~l~~~~~~iAav 224 (454)
T 4ao9_A 150 NSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVL--PY---NDAQTARAQIERHGPEIAVV 224 (454)
T ss_dssp SSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEE--CT---TCHHHHHHHHHHTGGGEEEE
T ss_pred CchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccC--CC---chHHHHHHHHhhcCCceEEE
Confidence 9999999999988877766788999998888765433211 111111111 21 37888998887543 34555
Q ss_pred EEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCC
Q 015435 182 LLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGE 260 (407)
Q Consensus 182 ~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 260 (407)
++ -..+...|.+ .+++.|++|.++|++||++||+||+..+ ..+ .......+.- ..+++ +++|.+| .|+
T Consensus 225 Iv-EPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G---~~~a~e~~gv-~PDi~---t~gK~lg-gG~ 293 (454)
T 4ao9_A 225 LV-EPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLA---PHGLANKLGI-RSDLT---TLGKYIG-GGM 293 (454)
T ss_dssp EE-CSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGS---TTCHHHHHTC-CCSEE---EEEGGGG-TTS
T ss_pred Ee-ccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCc---cccchhccCC-CCcEE---EeccccC-CCC
Confidence 55 3334445655 6788999999999999999999999874 222 1222222221 22333 4789998 789
Q ss_pred CcceeEEeecChhhHHHHHHHHhhh----hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015435 261 RVGALSIVCKTEDVASRVESQLKLV----IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDAL 336 (407)
Q Consensus 261 r~G~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 336 (407)
++|.+ ++. +++.+.+... ....+++.+++++.++.+.|+... -++..++++++.++|.+.|
T Consensus 294 Piga~--~~~-----~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~--------~~~~~~~~~~~g~~l~~~L 358 (454)
T 4ao9_A 294 SFGAF--GGR-----ADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLF--------TPEAAGALAERGEALRARL 358 (454)
T ss_dssp SCEEE--EEC-----HHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTS--------CHHHHHHHHHHHHHHHHHH
T ss_pred cceee--eeH-----HHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHh--------ccChhHHHHHHHHHHHHHH
Confidence 99998 465 4455544322 123445778888888777765321 0123344555555555555
Q ss_pred Hhc----CCCCCcccccCCceeEEe--c-----------CCCHH---HHHHhHhhccEEEcCCCeEEecC-CCCCChhHH
Q 015435 337 SAR----GTPGDWSHIIKQIGMFTF--T-----------GLNSE---QVAFMTKEYHIYMTSDGRISMAG-LSSKTVPHL 395 (407)
Q Consensus 337 ~~~----~~~~~~~~~~~~~~~~~~--~-----------~~~~~---~~~~~l~~~gi~~~~ggRis~~~-~~~e~i~~~ 395 (407)
+++ +.. .. +...|.++.+ . ..+.+ .+...+.++||.+.|.+++.++. ++++||+++
T Consensus 359 ~~l~~~~~~~--~~-vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~~~~~s~~~T~~dId~~ 435 (454)
T 4ao9_A 359 NALCANEGVA--MQ-FTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRGFVVLSLPLTDADIDRY 435 (454)
T ss_dssp HHHHHHHTBS--CE-EEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTCEEECCTTCCHHHHHHH
T ss_pred HHHHhhCCCC--EE-EeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCCCEEEeCCCCHHHHHHH
Confidence 543 321 11 2223333322 1 11222 22233444899999999664432 588999999
Q ss_pred HHHHHHHHHhh
Q 015435 396 TDAIHAAVTRM 406 (407)
Q Consensus 396 ~~~l~~~l~~~ 406 (407)
+++|++++.++
T Consensus 436 l~al~~~l~~~ 446 (454)
T 4ao9_A 436 VAAIGSFIGGH 446 (454)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhc
Confidence 99999999875
No 219
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.86 E-value=2.4e-20 Score=177.01 Aligned_cols=281 Identities=14% Similarity=0.072 Sum_probs=177.0
Q ss_pred ccchhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHH-----hh
Q 015435 49 LVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLA-----RH 123 (407)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~-----~~ 123 (407)
.++++++++.+.+. . ..|.+..+..++++++++++ +. +++++ ++|||+++.+++..+. .+
T Consensus 13 ~~~~~~~a~~~~~~--~---~~~~~~~~~~~l~~~la~~~-~~-------~~~i~--~~sGt~a~~~al~~~~~~~~~~~ 77 (390)
T 3b8x_A 13 WDDLEYKAIQSVLD--S---KMFTMGEYVKQYETQFAKTF-GS-------KYAVM--VSSGSTANLLMIAALFFTKKPRL 77 (390)
T ss_dssp CCHHHHHHHHHHHH--H---TCCSSCHHHHHHHHHHHHHH-TC-------SEEEE--ESCHHHHHHHHHHHTTSSSSCSC
T ss_pred CCHHHHHHHHHHHH--c---CCCCCChHHHHHHHHHHHHH-CC-------CcEEE--ECCHHHHHHHHHHHHHhhhhcCC
Confidence 35566666656654 1 23666778999999999998 53 36777 8888899998842221 15
Q ss_pred cCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHH
Q 015435 124 YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQI 203 (407)
Q Consensus 124 ~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i 203 (407)
.+||+|+++.|+|..+...++..|.+++.++.+ ++++.+|++++++.+. ++++++++. |++|.. .++++|
T Consensus 78 ~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~--~~~~~v~~~----~~~g~~---~~~~~i 147 (390)
T 3b8x_A 78 KKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDID-INTLNIDIESLKEAVT--DSTKAILTV----NLLGNP---NNFDEI 147 (390)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHHHHCC--TTEEEEEEE----CGGGCC---CCHHHH
T ss_pred CCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC-ccccCcCHHHHHHHhC--cCCeEEEEE----CCccCh---hhHHHH
Confidence 689999999999999999999999999999984 4457899999999987 456777763 244553 478999
Q ss_pred HHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHh
Q 015435 204 RQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLK 283 (407)
Q Consensus 204 ~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~ 283 (407)
+++|++||+++|+|++|+....... .. +....+-..+....+|.++ +| +.|++ +++++++.+++.....
T Consensus 148 ~~l~~~~~~~li~D~a~~~g~~~~~--~~-----~g~~~~~~~~s~~~~k~~~-~g-~gG~~--~~~~~~l~~~~~~~~~ 216 (390)
T 3b8x_A 148 NKIIGGRDIILLEDNCESMGATFNN--KC-----AGTFGLMGTFSSFYSNHIA-TM-EGGCI--VTDDEEIYHILLCIRA 216 (390)
T ss_dssp HHHHTTSCCEEEEECTTCTTCEETT--EE-----TTSSSSEEEEECCTTSSSC-SS-SCEEE--EESCHHHHHHHHHHTB
T ss_pred HHHHHHcCCEEEEECcCcccCEECC--cc-----cccccceEEEEccCCCCCc-cC-CceEE--EeCCHHHHHHHHHHHh
Confidence 9999999999999999974322111 10 1000111122223355554 23 33777 5776565554443221
Q ss_pred hh--hh-------------------------cccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015435 284 LV--IR-------------------------PMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDAL 336 (407)
Q Consensus 284 ~~--~~-------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 336 (407)
.. .. ......+.+.+.++...+ +.+++..++.+++++++.+.|
T Consensus 217 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l----------~~l~~~~~~~~~~~~~l~~~L 286 (390)
T 3b8x_A 217 HGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL----------KKLPRFISVRRKNAEYFLDKF 286 (390)
T ss_dssp TTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHh
Confidence 11 00 000113333333333222 235567778888999999999
Q ss_pred HhcCCCCCcccccC--CceeEE-e---c---CCCHHHHHHhHhhccEEEcC
Q 015435 337 SARGTPGDWSHIIK--QIGMFT-F---T---GLNSEQVAFMTKEYHIYMTS 378 (407)
Q Consensus 337 ~~~~~~~~~~~~~~--~~~~~~-~---~---~~~~~~~~~~l~~~gi~~~~ 378 (407)
++.+. +.+..+ ..+++. + . +.+.+.+...|.++||.+.+
T Consensus 287 ~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~ 334 (390)
T 3b8x_A 287 KDHPY---LDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRP 334 (390)
T ss_dssp TTCSS---EEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBC
T ss_pred cCCCC---cccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeee
Confidence 87632 444332 233322 1 2 24677777767778997764
No 220
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.85 E-value=2.1e-20 Score=180.61 Aligned_cols=280 Identities=16% Similarity=0.221 Sum_probs=168.3
Q ss_pred HHHHHHHhCCCCCCCCCCc---eEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH--------HHhhcCce-
Q 015435 82 KLSAKLILGADSPAIKDNR---VTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK--------VFTLAGLS- 149 (407)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~---i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~--------~~~~~G~~- 149 (407)
+.+++++ +.. .++ .++ ++|||+|+.++ +...+.+||+|+++++.|.++.. .+...|..
T Consensus 107 ~~~a~l~-g~~-----~~~~~~~v~--~~sGt~An~~a--l~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~ 176 (490)
T 2a7v_A 107 RRALEAF-DLD-----PAQWGVNVQ--PYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFF 176 (490)
T ss_dssp HHHHHHT-TCC-----TTTEEEECC--CSSHHHHHHHH--HHHHCCSCEECCC---------------------------
T ss_pred HHHHHHc-CCC-----cccCceEEe--CCchHHHHHHH--HHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeE
Confidence 6667766 542 122 234 67899999988 45668899999999998865421 23345544
Q ss_pred -eeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccc-cccCCC
Q 015435 150 -VKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQ-GFASGS 227 (407)
Q Consensus 150 -~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~-~~~~~~ 227 (407)
++.+++ +++++.+|++++++.+.+. +++++++ +.++||+. . ++++|+++|++||++|++|+++. ++...+
T Consensus 177 ~~~~~~v-d~~~~~iD~d~le~~l~~~-~~klIi~-~~s~~~~~--~---dl~~i~~ia~~~g~~livD~Ah~~glv~~g 248 (490)
T 2a7v_A 177 ESMPYKL-NPKTGLIDYNQLALTARLF-RPRLIIA-GTSAYARL--I---DYARMREVCDEVKAHLLADMAHISGLVAAK 248 (490)
T ss_dssp ----CCB-CTTTCSBCHHHHHHHHHHH-CCSEEEE-CCSSCCSC--C---CHHHHHHHHHHTTCEEEEECGGGHHHHHTT
T ss_pred EEEeccc-ccccCCcCHHHHHHHHhhc-CCcEEEE-cCCCCCCc--c---cHHHHHHHHHHcCCEEEEccccccccccCC
Confidence 344444 3456789999999998632 3566655 78888863 2 58899999999999999999963 443332
Q ss_pred CCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecCh--------------hhHHHHHHHHhhhhhcccC-C
Q 015435 228 LDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTE--------------DVASRVESQLKLVIRPMYS-S 292 (407)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~--------------~~~~~~~~~~~~~~~~~~~-~ 292 (407)
..+. + + . ...+++.|++|.++ |.|.|++ +++++ ++.++ ++........ +
T Consensus 249 ~~~~--~---~-~--~aDiv~~S~hK~l~--Gp~GG~i--~~~~~~~~~~~~~~~~~~~~l~~~----i~~~~~~g~qgg 312 (490)
T 2a7v_A 249 VIPS--P---F-K--HADIVTTTTHKTLR--GARSGLI--FYRKGVKAVDPKTGREIPYTFEDR----INFAVFPSLQGG 312 (490)
T ss_dssp SSCC--G---G-G--TCSEEEEESSGGGC--SCSCEEE--EEECSEEEEETTTEEEEECCCHHH----HHHHHTTTTCCS
T ss_pred cCCC--C---C-C--CCCEEEECCcccCc--cccchhe--eeccchhcccccccchhhHHHHHH----HHHHhcccCCCC
Confidence 2111 1 1 1 23478899999874 6787888 56653 23333 3333222222 3
Q ss_pred CChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC-CceeEEec-----CCCHHHHH
Q 015435 293 PPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK-QIGMFTFT-----GLNSEQVA 366 (407)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~ 366 (407)
++...+.++..++... .....++..+++.++++++.+.|++.| +.+..+ ....+.|+ +++.+.+.
T Consensus 313 p~~~~iaAla~Al~~~-----~~~~~~~~~~~~~~na~~L~~~L~~~G----~~v~~~~t~t~lv~vdl~~~g~~~~~~~ 383 (490)
T 2a7v_A 313 PHNHAIAAVAVALKQA-----CTPMFREYSLQVLKNARAMADALLERG----YSLVSGGTDNHLVLVDLRPKGLDGARAE 383 (490)
T ss_dssp CCHHHHHHHHHHHHHH-----HSHHHHHHHHHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEECTTTTCCHHHHH
T ss_pred chHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHHHcC----cEEecCCCCCeEEEEEeCCCCCCHHHHH
Confidence 3433333333333311 112346677888899999999999987 565432 23345555 34677788
Q ss_pred HhHhhccEEEcC----C--------C-eEEec-----CCCCCChhHHHHHHHHHHH
Q 015435 367 FMTKEYHIYMTS----D--------G-RISMA-----GLSSKTVPHLTDAIHAAVT 404 (407)
Q Consensus 367 ~~l~~~gi~~~~----g--------g-Ris~~-----~~~~e~i~~~~~~l~~~l~ 404 (407)
..|++.||.+.+ + + ||+.. +.+++|++++++.|.++++
T Consensus 384 ~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 384 RVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp HHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence 888889999963 2 1 77542 1477999999999998875
No 221
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.85 E-value=5e-20 Score=181.08 Aligned_cols=323 Identities=13% Similarity=0.065 Sum_probs=199.8
Q ss_pred cchhHHHHHHHHhccccccccCCCCCCcHH----HHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHh---
Q 015435 50 VLNVVRKAEQLLVNDQSRVKEYLPIVGLVD----FNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLAR--- 122 (407)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~----l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~--- 122 (407)
|..+..+.+.... ......|....+..+ +++.+++++ +.. ++++++ |+|||+++..++..+..
T Consensus 121 ~~~~~~~~l~~~~--n~~~~~~~~s~~~~~le~~~~~~la~l~-g~~-----~~~~~~--t~ggtea~~~al~~ar~~~~ 190 (515)
T 2jis_A 121 PHALAGRIITESL--NTSQYTYEIAPVFVLMEEEVLRKLRALV-GWS-----SGDGIF--CPGGSISNMYAVNLARYQRY 190 (515)
T ss_dssp HHHHHHHHHHHHH--CCCTTCTTTCHHHHHHHHHHHHHHHHHH-TCS-----SCEEEE--ESSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh--ccCCCchhhchHHHHHHHHHHHHHHHHh-CCC-----CCCeEE--cCCcHHHHHHHHHHHHHHHh
Confidence 4444444444443 122334554445434 455566665 432 478999 99999998888544321
Q ss_pred --hc-CCC------eEEecCCCCCChHHHHhhcCc---eeeEEEeecCCCCCcChhhHHHHHHcC---C-CCcEEEEecC
Q 015435 123 --HY-HQL------TIYIPQPTWGNHPKVFTLAGL---SVKTYRYYDPATRGLNFQGLLEDLRAA---P-SGAIVLLHAC 186 (407)
Q Consensus 123 --~~-~gd------~Vi~~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~i~~~---~-~~~~v~i~~~ 186 (407)
+. +|+ .|+++.+.|+.+...++..|. +++.+|. +.++.+|+++|++++.+. . ++.+|++ ++
T Consensus 191 ~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~-~~ 267 (515)
T 2jis_A 191 PDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKA--DERGKMVPEDLERQIGMAEAEGAVPFLVSA-TS 267 (515)
T ss_dssp TTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSCBCHHHHHHHHHHHHHTTCEEEEEEE-EB
T ss_pred hHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEec--CCCCcCCHHHHHHHHHHHHhCCCCcEEEEE-eC
Confidence 12 465 789999999999999998888 8999988 345789999999999731 1 2445555 89
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeE
Q 015435 187 AHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALS 266 (407)
Q Consensus 187 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 266 (407)
|+||||.+.+ +++|+++|++||+++++|++|..+....... .+. +.......+++.|++|.++.| .++|++
T Consensus 268 ~~n~tG~i~~---l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~-~~~---~~g~~~aD~v~~s~hK~l~~p-~g~G~l- 338 (515)
T 2jis_A 268 GTTVLGAFDP---LEAIADVCQRHGLWLHVDAAWGGSVLLSQTH-RHL---LDGIQRADSVAWNPHKLLAAG-LQCSAL- 338 (515)
T ss_dssp SCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTT-GGG---GTTGGGCSEEEECTTSTTCCC-SCCEEE-
T ss_pred CCCCCCCccC---HHHHHHHHHHcCCeEEEehhhhhHHHhChhh-Hhh---cCCCccCCEEEECcccccCCC-CCeeEE-
Confidence 9999999754 7888899999999999999998777532110 011 111113357888999998744 578998
Q ss_pred EeecCh-hhHHHHH----HHHhhhhh-------cccC------CCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 015435 267 IVCKTE-DVASRVE----SQLKLVIR-------PMYS------SPPIHGASIVATILKDSTMYKEWTLELKAMADRIISM 328 (407)
Q Consensus 267 ~v~~~~-~~~~~~~----~~~~~~~~-------~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (407)
+++++ ++.++.. ..+..... .... ....+.+.++...+. ...+++..++..++
T Consensus 339 -~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg--------~~g~~~~~~~~~~~ 409 (515)
T 2jis_A 339 -LLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG--------DQGLERRIDQAFVL 409 (515)
T ss_dssp -EESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred -EEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh--------HHHHHHHHHHHHHH
Confidence 67766 4444321 11111000 0000 011233333433332 13466777888899
Q ss_pred HHHHHHHHHhcCCCCCccccc-CCceeEEecCC--------C-HH----------HHHHhHhhccEEE-c----CC--C-
Q 015435 329 RQQLFDALSARGTPGDWSHII-KQIGMFTFTGL--------N-SE----------QVAFMTKEYHIYM-T----SD--G- 380 (407)
Q Consensus 329 ~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~--------~-~~----------~~~~~l~~~gi~~-~----~g--g- 380 (407)
++++.+.|++.+. +++.. +..+.+.|... + .+ .+...+.+.|+.+ . ++ +
T Consensus 410 a~~l~~~L~~~~g---~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~ 486 (515)
T 2jis_A 410 ARYLVEEMKKREG---FELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNF 486 (515)
T ss_dssp HHHHHHHHHTSTT---EEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEE
T ss_pred HHHHHHHHhcCCC---EEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEE
Confidence 9999999998732 65543 34455555211 1 11 1333344467543 2 22 2
Q ss_pred -eEEec-C-CCCCChhHHHHHHHHHHHhh
Q 015435 381 -RISMA-G-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 381 -Ris~~-~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
|++++ . .+++++++++++|+++++++
T Consensus 487 lRis~~~~~~t~edid~~~~~l~~~~~~~ 515 (515)
T 2jis_A 487 FRVVVANSALTCADMDFLLNELERLGQDL 515 (515)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 99984 2 47799999999999987653
No 222
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.85 E-value=2.8e-20 Score=187.62 Aligned_cols=302 Identities=12% Similarity=0.025 Sum_probs=187.7
Q ss_pred CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH-HhhcCceee
Q 015435 73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV-FTLAGLSVK 151 (407)
Q Consensus 73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~-~~~~G~~~~ 151 (407)
+..-+.++++.+|+++ +.. ..+++ ++|+++++.+++ ...+.+||.|+++.++|.++... +...|++++
T Consensus 171 ~~~~i~e~e~~lA~~~-gae------~~i~v--~nGtt~an~~ai--~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v 239 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVY-NAD------KTYFV--LGGSSNANNTVT--SALVSNGDLVLFDRNNHKSVYNSALAMAGGRPV 239 (730)
T ss_dssp TBTHHHHHHHHHHHHT-TCS------EEEEE--SSHHHHHHHHHH--HHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEE
T ss_pred ChHHHHHHHHHHHHHH-CCC------cEEEE--CCHHHHHHHHHH--HHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEE
Confidence 3445788999999988 541 44666 888889999984 55588999999999999988888 889999999
Q ss_pred EEEeecCCCC----CcChhhH-----HHHHHcC-CC---C----cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCcee
Q 015435 152 TYRYYDPATR----GLNFQGL-----LEDLRAA-PS---G----AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLP 214 (407)
Q Consensus 152 ~v~~~~~~~~----~~d~~~l-----~~~i~~~-~~---~----~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l 214 (407)
.++... +.+ .+|++++ ++++.+. +. + +++++ ++| ||||.+.+ +++|+++|++||+++
T Consensus 240 ~v~~~~-~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv-~~p-n~~G~v~d---l~~I~~la~~~g~~l 313 (730)
T 1c4k_A 240 YLQTNR-NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVI-QLG-TYDGTIYN---AHEVVKRIGHLCDYI 313 (730)
T ss_dssp EECEEE-CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEE-ESB-CTTSEEEC---HHHHHHHHGGGBSEE
T ss_pred EEeCCc-cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEE-ECC-CCCCeecC---HHHHHHHHHHcCCeE
Confidence 887742 223 3788988 8888632 11 3 56666 677 68999764 788899999999999
Q ss_pred eeccccccc-cCCCCCchhHHHH--HHHHcCCcEEEEEecCccccccCCCcceeEEeecChhh--------HHHHHHHHh
Q 015435 215 FFDSAYQGF-ASGSLDADAQSVR--MFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDV--------ASRVESQLK 283 (407)
Q Consensus 215 i~D~~y~~~-~~~~~~~~~~~~~--~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~--------~~~~~~~~~ 283 (407)
++|++|... .+.+.-+...++. .+.....+++++.|+||.+ +|++.|+++ +++++.+ ..++.....
T Consensus 314 ivDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I-~v~~~~l~g~~~~i~~~~~~~~~~ 390 (730)
T 1c4k_A 314 EFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQI-HKKDSHIKGQLRYCDHKHFNNSFN 390 (730)
T ss_dssp EEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEE-EEECGGGTTSTTCCCHHHHHHHHH
T ss_pred EEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEE-EecchhhcCcccccCHHHHHHHHH
Confidence 999998643 3321000000110 0011123569999999975 567666552 3444432 122222222
Q ss_pred hhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcccccC------------
Q 015435 284 LVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSA-RGTPGDWSHIIK------------ 350 (407)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~------------ 350 (407)
. ....+++...+.++..+++... .+...+..+++.++.+++++.|++ +.. +.+..+
T Consensus 391 ~---~~stsp~~~~iaal~aA~~~l~-----~~~g~~~~~~~~~~a~~lr~~L~~~i~g---~~v~~p~~~~~~~~~~~~ 459 (730)
T 1c4k_A 391 L---FMSTSPFYPMYAALDVNAAMQE-----GEAGRKLWHDLLITTIEARKKLIKAGSM---FRPFVPPVVNGKKWEDGD 459 (730)
T ss_dssp H---HSCSSCCHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHHTTCS---SEESSCSEETTEEGGGSC
T ss_pred H---hCCCCCcHHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHhhhCCC---eEEccccccccccccccc
Confidence 1 1223455444443333332111 012334556677777788888877 321 222111
Q ss_pred --------------------------Ccee--------EEec------------CCCHHHHHHhHhhccEEEcCCC----
Q 015435 351 --------------------------QIGM--------FTFT------------GLNSEQVAFMTKEYHIYMTSDG---- 380 (407)
Q Consensus 351 --------------------------~~~~--------~~~~------------~~~~~~~~~~l~~~gi~~~~gg---- 380 (407)
.+.+ +... +++...+.+.|.++||.+.+.+
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~~~i 539 (730)
T 1c4k_A 460 TEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSI 539 (730)
T ss_dssp HHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEE
T ss_pred cccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCCCeE
Confidence 1101 1111 2456667766766799887754
Q ss_pred eEEecC-CCCCChhHHHHHHHHHHHh
Q 015435 381 RISMAG-LSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 381 Ris~~~-~~~e~i~~~~~~l~~~l~~ 405 (407)
|++++. .+++++++++++|+++.+.
T Consensus 540 r~~~s~g~t~e~i~~Ll~aL~~i~~~ 565 (730)
T 1c4k_A 540 LFLMTPAETPAKMNNLITQLLQLQRL 565 (730)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 665543 4778999999999988754
No 223
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=184.08 Aligned_cols=329 Identities=10% Similarity=0.021 Sum_probs=205.6
Q ss_pred chhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCC--------CCceEEeecCCcccHHHHHHHHHHh
Q 015435 51 LNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIK--------DNRVTTVQCLSGTGSLRVGAEFLAR 122 (407)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~--------~~~i~~~~t~g~t~a~~~~~~~~~~ 122 (407)
+..+.+++.... + .....|....+..++++.+++++....+.+.. ....++ |+|||+++..++...+.
T Consensus 92 ~~~~~~~~~~~~-n-~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~--~~ggt~an~~al~~ar~ 167 (481)
T 4e1o_A 92 PSLLGDMLADAI-N-CLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVL--QSTVSESTLIALLAARK 167 (481)
T ss_dssp HHHHHHHHHHHH-C-CCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEE--ESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-C-cccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEE--eCchHHHHHHHHHHHHH
Confidence 344444544444 2 23456777788889999988887333222211 135688 99999999888543321
Q ss_pred h-----------------cCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC---CCcEEE
Q 015435 123 H-----------------YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP---SGAIVL 182 (407)
Q Consensus 123 ~-----------------~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~---~~~~v~ 182 (407)
. .+++.|+++.++|..+.+.+...|.+++.+|. ++++.+|+++|++++.+.. ..+.++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~--~~~~~~d~~~Le~~i~~~~~~g~~~~~v 245 (481)
T 4e1o_A 168 NKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPV--DDNFSLRGEALQKAIEEDKQRGLVPVFV 245 (481)
T ss_dssp HHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEc--CCCCcCCHHHHHHHHHHHHhCCCCcEEE
Confidence 1 25678999999999999999999999999998 3567899999999997421 124445
Q ss_pred EecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCc
Q 015435 183 LHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERV 262 (407)
Q Consensus 183 i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 262 (407)
+.+.++|+||.+ +++++|+++|++||+++++|++|........ ..... .........+..+++|.++.| ..+
T Consensus 246 v~~~~~t~~G~i---d~l~~I~~la~~~~~~lhvDaA~g~~~~~~~--~~~~~--~~gi~~aDsi~~~~hK~l~~p-~g~ 317 (481)
T 4e1o_A 246 CATLGTTGVCAF---DCLSELGPICAREGLWLHIDAAYAGTAFLCP--EFRGF--LKGIEYADSFTFNPSKWMMVH-FDC 317 (481)
T ss_dssp EEEBSCTTTCCB---CCHHHHHHHHHHHTCEEEEECTTGGGGGGSG--GGGGG--GTTGGGCSEEEECHHHHSSCC-SSC
T ss_pred EEecCCCCCcCc---CCHHHHHHHHHHcCCeEEeehhhHHHHHhCh--hhHHH--hcCcccCCEEEEChHHhcCCC-Cce
Confidence 557889999985 5699999999999999999999987643211 11110 001012245667999998855 456
Q ss_pred ceeEEeecChhhHHHHHHHHhhhhhc-----------ccC--C--CChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH
Q 015435 263 GALSIVCKTEDVASRVESQLKLVIRP-----------MYS--S--PPIHGASIVATILKDSTMYKEWTLELKAMADRIIS 327 (407)
Q Consensus 263 G~~~~v~~~~~~~~~~~~~~~~~~~~-----------~~~--~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 327 (407)
|++ ++.+++...+.......+... +.. + ...+.+.++...+. .+.++++.++..+
T Consensus 318 g~l--~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g--------~~g~~~~~~~~~~ 387 (481)
T 4e1o_A 318 TGF--WVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG--------VKNLQAHVRHGTE 387 (481)
T ss_dssp EEE--EESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred EEE--EEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH--------HHHHHHHHHHHHH
Confidence 777 577654221110000001000 000 0 12333444444332 1446778888999
Q ss_pred HHHHHHHHHHhcCCCCCcccccC-CceeEEec--CC---CHHHHHHhHhhccEEEcCC---C----eEEecC--CCCCCh
Q 015435 328 MRQQLFDALSARGTPGDWSHIIK-QIGMFTFT--GL---NSEQVAFMTKEYHIYMTSD---G----RISMAG--LSSKTV 392 (407)
Q Consensus 328 ~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~--~~---~~~~~~~~l~~~gi~~~~g---g----Ris~~~--~~~e~i 392 (407)
+++++.+.|++.+. +++..+ ..+++.|. +. +.+...++.++..+.+.++ | |+++.+ .+++++
T Consensus 388 ~a~~l~~~L~~~~g---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di 464 (481)
T 4e1o_A 388 MAKYFESLVRNDPS---FEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDI 464 (481)
T ss_dssp HHHHHHHHHHTCTT---EECCSCCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHhcCCC---eEEecCCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHH
Confidence 99999999998742 666543 34443332 22 1223445555433444442 3 888764 256899
Q ss_pred hHHHHHHHHHHHhh
Q 015435 393 PHLTDAIHAAVTRM 406 (407)
Q Consensus 393 ~~~~~~l~~~l~~~ 406 (407)
++++++|+++++++
T Consensus 465 ~~~~~~i~~~~~~l 478 (481)
T 4e1o_A 465 LRDWNLIRDAATLI 478 (481)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988753
No 224
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.84 E-value=2.2e-20 Score=181.54 Aligned_cols=328 Identities=12% Similarity=0.030 Sum_probs=203.2
Q ss_pred chhHHHHHHHHhccccccccCCCCCCcHHHHHHHHHHHhCCCCCCCC-------CCceEEeecCCcccHHHHHHHHHHhh
Q 015435 51 LNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIK-------DNRVTTVQCLSGTGSLRVGAEFLARH 123 (407)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l~~~~a~~~~~~~~~~~~-------~~~i~~~~t~g~t~a~~~~~~~~~~~ 123 (407)
+..+.+++.... +. ....|....+..++++.+++++....+.+.. ....++ |+|||+++..++...+..
T Consensus 87 ~~~~~~~l~~~~-n~-~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~--t~ggt~anl~al~~ar~~ 162 (475)
T 3k40_A 87 PAIVADMLSGAI-AC-IGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVI--QGTASESTLVALLGAKAK 162 (475)
T ss_dssp HHHHHHHHHHHH-CC-CSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEE--ESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-Cc-cccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEE--cCchHHHHHHHHHHHHHH
Confidence 344444444444 22 3455777778888999888887443333211 135888 999999988875333211
Q ss_pred -----------------cCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC---CCcEEEE
Q 015435 124 -----------------YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP---SGAIVLL 183 (407)
Q Consensus 124 -----------------~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~---~~~~v~i 183 (407)
.+++.|+++.++|.++.+.+...|.+++.+|++ .++ +|+++|++++.+.. ..+.+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d--~~~-~d~~~L~~~i~~~~~~~~~~~~v~ 239 (475)
T 3k40_A 163 KLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE--NHR-MRGAALEKAIEQDVAEGLIPFYAV 239 (475)
T ss_dssp HHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCB--TTB-CCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECC--CCC-cCHHHHHHHHHHHHHCCCccEEEE
Confidence 134689999999999999999999999999983 346 99999999997421 1244455
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcc
Q 015435 184 HACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVG 263 (407)
Q Consensus 184 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 263 (407)
.+.++|+||.+ +++++|+++|++||+++++|++|........ ..... +........+..+++|.++.| ..+|
T Consensus 240 ~~~~~t~~G~~---~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~--~~~~~--~~gi~~~Ds~~~~~hK~l~~p-~g~g 311 (475)
T 3k40_A 240 VTLGTTNSCAF---DYLDECGPVGNKHNLWIHVDAAYAGSAFICP--EYRHL--MKGIESADSFNFNPHKWMLVN-FDCS 311 (475)
T ss_dssp EEBSCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGSG--GGGGG--GTTGGGCSEEEECHHHHSSCC-SSCE
T ss_pred EEecCCCCcCc---CCHHHHHHHHHHhCCeEEEeHHhHHHHHhCH--hhHHH--hcCcccCCEEEECchhccCCC-CceE
Confidence 57889999995 5688999999999999999999976543211 11100 001112346678999987744 5678
Q ss_pred eeEEeecChhhHHHHHHHHhhhhhc-----------ccCCC----ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 015435 264 ALSIVCKTEDVASRVESQLKLVIRP-----------MYSSP----PIHGASIVATILKDSTMYKEWTLELKAMADRIISM 328 (407)
Q Consensus 264 ~~~~v~~~~~~~~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (407)
++ ++++++...+.......+... +.... ..+.+.++...+. .+.+++..++..++
T Consensus 312 ~l--~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g--------~~g~~~~~~~~~~~ 381 (475)
T 3k40_A 312 AM--WLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG--------VENLQAHIRRHCNF 381 (475)
T ss_dssp EE--EESSGGGC---------------------------CCCGGGTHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred EE--EEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh--------HHHHHHHHHHHHHH
Confidence 88 577665422111111011000 00001 1222333333332 14467788889999
Q ss_pred HHHHHHHHHhcCCCCCccccc-CCceeEEec--CC---CHHHHHHhHhhccEEEcCC---C----eEEecC--CCCCChh
Q 015435 329 RQQLFDALSARGTPGDWSHII-KQIGMFTFT--GL---NSEQVAFMTKEYHIYMTSD---G----RISMAG--LSSKTVP 393 (407)
Q Consensus 329 ~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~--~~---~~~~~~~~l~~~gi~~~~g---g----Ris~~~--~~~e~i~ 393 (407)
++++.+.|++.+. +++.. +..+++.|. +. +.+...++.++.++.+.++ | |+++.+ .++++++
T Consensus 382 a~~l~~~L~~~~g---~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~ 458 (475)
T 3k40_A 382 AKQFGDLCVADSR---FELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDME 458 (475)
T ss_dssp HHHHHHHHHHSTT---EEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHH
T ss_pred HHHHHHHHhcCCC---EEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHH
Confidence 9999999998743 66654 344444432 22 1233445555444454432 3 888764 3668999
Q ss_pred HHHHHHHHHHHhh
Q 015435 394 HLTDAIHAAVTRM 406 (407)
Q Consensus 394 ~~~~~l~~~l~~~ 406 (407)
+++++|+++++++
T Consensus 459 ~~~~~i~~~~~~~ 471 (475)
T 3k40_A 459 YSWKEVSAAADEM 471 (475)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 225
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.84 E-value=5.5e-20 Score=177.27 Aligned_cols=280 Identities=15% Similarity=0.110 Sum_probs=170.6
Q ss_pred cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh----hcCceeeE
Q 015435 77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT----LAGLSVKT 152 (407)
Q Consensus 77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~----~~G~~~~~ 152 (407)
..++++.+++++ +. +++++++ ++|+|.+.+.+.... .+.+||+|+++.++|+.+...++ ..|++++.
T Consensus 110 ~~~~~~~la~~~-g~-----~~~~i~~--~~g~taa~ea~~~a~-~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~ 180 (438)
T 1wyu_A 110 TFEYQTMIAELA-GL-----EIANASM--YDGATALAEGVLLAL-RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLT 180 (438)
T ss_dssp HHHHHHHHHHHH-TS-----SEECSCB--SSHHHHHHHHHHHHH-HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHh-CC-----CccceEE--eCcHHHHHHHHHHHH-hcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEE
Confidence 457777788877 43 2367888 999995555553222 35689999999999998886664 48999999
Q ss_pred EEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchh
Q 015435 153 YRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADA 232 (407)
Q Consensus 153 v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~ 232 (407)
++. + ++.+|+++ ++ ++++++++ ++| ||||.+. ++++|+++|+++|+++++|..-..++.-.. +
T Consensus 181 v~~--~-~~~~d~~~----i~--~~t~~v~i-~~p-n~tG~~~---~l~~i~~la~~~g~~vivd~d~~a~g~~~~--~- 243 (438)
T 1wyu_A 181 LPL--E-GGRTPLPE----VG--EEVGAVVV-QNP-NFLGALE---DLGPFAEAAHGAGALFVAVADPLSLGVLKP--P- 243 (438)
T ss_dssp ECC--B-TTBCCCCC----CC--TTEEEEEE-ESS-CTTSBCC---CHHHHHHHHHHTTCEEEEECCTTGGGTBCC--H-
T ss_pred EcC--c-CCccCHHH----hC--CCeEEEEE-ECC-CCCeEEe---cHHHHHHHHHHcCCEEEEEechhhccCcCC--C-
Confidence 986 2 34677776 44 45677777 778 9999987 588888889999999995532111211111 1
Q ss_pred HHHHHHHHcCCcEEEEEecCccc----cccCCCcceeEEeecChhhHHHHHHHH--------------------hhhhh-
Q 015435 233 QSVRMFVADGGECLVAQSYAKNM----GLYGERVGALSIVCKTEDVASRVESQL--------------------KLVIR- 287 (407)
Q Consensus 233 ~~~~~~~~~~~~~i~~~s~sK~~----~~~G~r~G~~~~v~~~~~~~~~~~~~~--------------------~~~~~- 287 (407)
. ..+ ..++++| +|.| ++.|.|+|++ +++ +++.+.+...+ ....+
T Consensus 244 ---~---~~g-~D~~~~s-~kk~~~~~~~~Gp~~G~l--~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~ 312 (438)
T 1wyu_A 244 ---G---AYG-ADIAVGD-GQSLGLPMGFGGPHFGFL--ATK-KAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRR 312 (438)
T ss_dssp ---H---HHT-CSEEEEE-CTTTTCCCGGGCSCCEEE--EEC-GGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHG
T ss_pred ---c---cCC-CCEEEEC-CcccCCCccCCCCCeeEE--EEc-HHHHHhCCCceeccccccCCCcceeeeccccccccch
Confidence 1 112 2355555 5654 4567799998 455 44333221000 00000
Q ss_pred -cccCCC---ChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcccccCCceeEE---e-c
Q 015435 288 -PMYSSP---PIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFT---F-T 358 (407)
Q Consensus 288 -~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~---~-~ 358 (407)
..+.+. ..+....+...+.... .+.+++.+++++++++++.+.|+++ | +++..+.. +|. + .
T Consensus 313 ~~~t~~~~~~~~~~a~~aa~~l~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~~g----~~~~~~~~-~~~~~~~~~ 382 (438)
T 1wyu_A 313 AKAKSNITTNAQLTALMGAMYLAALG-----PEGLREVALKSVEMAHKLHALLLEVPG----VRPFTPKP-FFNEFALAL 382 (438)
T ss_dssp GGSSCCCCSCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTSTT----CEECSCSS-BCSEEEEEC
T ss_pred hcccCCccchHHHHHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHhcCCC----eEECCCCC-eEEEEEEeC
Confidence 111111 1111211111122111 1346778888999999999999987 5 56554422 222 2 1
Q ss_pred CCCHHHHHHhHhhccEEE--cCC-----C--eEEecC-CCCCChhHHHHHHHHHH
Q 015435 359 GLNSEQVAFMTKEYHIYM--TSD-----G--RISMAG-LSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 359 ~~~~~~~~~~l~~~gi~~--~~g-----g--Ris~~~-~~~e~i~~~~~~l~~~l 403 (407)
+.+...+.+.|.++||.+ .++ + ||++.. .+++++++++++|++++
T Consensus 383 ~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 383 PKDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp SSCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 345555555555579988 443 2 888874 37789999999998764
No 226
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.82 E-value=2.4e-19 Score=182.47 Aligned_cols=176 Identities=15% Similarity=0.146 Sum_probs=123.6
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEe
Q 015435 76 GLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRY 155 (407)
Q Consensus 76 g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~ 155 (407)
-+.++++.+++++ +.. +.+++ ++|+++++.+++ ...+.+||.|+++.|+|.++...+...|++++.++.
T Consensus 206 ~v~~~ee~la~l~-G~d------~~i~~--~~Gtt~a~~~~i--~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~ 274 (755)
T 2vyc_A 206 AFGESEKYAARVF-GAD------RSWSV--VVGTSGSNRTIM--QACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVP 274 (755)
T ss_dssp HHHHHHHHHHHHH-TCS------EEEEE--SSHHHHHHHHHH--HHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECC
T ss_pred HHHHHHHHHHHHh-CCC------ceEEE--CCcHHHHHHHHH--HHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeC
Confidence 3567777788777 541 45667 888899999984 555889999999999999999989999999999987
Q ss_pred ecCCCCC----c-----ChhhHHHHHHcCCCCc--------EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecc
Q 015435 156 YDPATRG----L-----NFQGLLEDLRAAPSGA--------IVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDS 218 (407)
Q Consensus 156 ~~~~~~~----~-----d~~~l~~~i~~~~~~~--------~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~ 218 (407)
. .+.++ + |++++++++.+.+.++ ++++ ++| ||||.+.+ +++|+++|++||+++++|+
T Consensus 275 ~-~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil-~~p-n~~G~v~d---l~~I~~ia~~~~~~livDe 348 (755)
T 2vyc_A 275 S-RNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVV-TNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDE 348 (755)
T ss_dssp C-BCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEE-ESS-CTTSEEEC---HHHHHHHHTTTCSEEEEEC
T ss_pred C-CCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEE-ECC-CCCceecC---HHHHHHHHHHcCCEEEEEC
Confidence 3 22233 4 9999999997543333 6666 677 79999764 7888899999999999999
Q ss_pred cccccc-CCCCCchhHHHHHH--HH-cCCcEEEEEecCccccccCCCcceeEEeecCh
Q 015435 219 AYQGFA-SGSLDADAQSVRMF--VA-DGGECLVAQSYAKNMGLYGERVGALSIVCKTE 272 (407)
Q Consensus 219 ~y~~~~-~~~~~~~~~~~~~~--~~-~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~ 272 (407)
+|.... +.+.-.+..++ .. .+ ...+++++.|+||.+ +|++.|.++ +++++
T Consensus 349 A~~~~~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i-~~~~~ 402 (755)
T 2vyc_A 349 AWYGYARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLL--NALSQASYI-HVREG 402 (755)
T ss_dssp TTCTTGGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSS--SCCTTCEEE-EEECC
T ss_pred cCchhcccCcccCCcchh-cCCcCCccCCCeEEEECccccc--cCcCCeeee-eecCc
Confidence 987532 22100000111 00 11 134667999999985 567644442 45443
No 227
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.82 E-value=3.7e-19 Score=170.57 Aligned_cols=346 Identities=12% Similarity=0.078 Sum_probs=209.8
Q ss_pred hcCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccc-cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435 27 KDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVK-EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ 105 (407)
Q Consensus 27 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~ 105 (407)
...++++||+..|....+.| ..++++++++.+++. ...+.. .+.+.....++.+.+++...+ .. .+.+++
T Consensus 60 D~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~-~~~~~~~~~~~~~~~~~lae~L~~~~p~-~~----~~~v~f-- 130 (456)
T 4atq_A 60 DVDGNSFIDLGSGIAVTSVG-ASDPAVVAAVQEAAA-HFTHTCFMVTPYEGYVAVTEQLNRLTPG-DH----AKRTVL-- 130 (456)
T ss_dssp ETTSCEEEESSHHHHTCTTC-TTCHHHHHHHHHHHH-HCSCCTTTTSCCHHHHHHHHHHHHHSSC-SS----CEEEEE--
T ss_pred eCCCCEEEEccccHHHHhcC-CCCHHHHHHHHHHHh-hccCcccCccCcHHHHHHHHHHHHhCCC-CC----CcEEEE--
Confidence 34678999999997666677 667788888888776 111111 122333445667777776622 11 267889
Q ss_pred cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhh-cC-------------ceeeEEEeecCC----CCCcChhh
Q 015435 106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTL-AG-------------LSVKTYRYYDPA----TRGLNFQG 167 (407)
Q Consensus 106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~-~G-------------~~~~~v~~~~~~----~~~~d~~~ 167 (407)
++||++|++.++++.+......+|+...-+|++....... .| -.+..+|...+. ....+.+.
T Consensus 131 ~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~ 210 (456)
T 4atq_A 131 FNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEA 210 (456)
T ss_dssp ESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHH
T ss_pred eCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHH
Confidence 9999999999999988777778999999999877543321 11 123344432111 11122333
Q ss_pred HHHHHHc-----CC-CCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435 168 LLEDLRA-----AP-SGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA 240 (407)
Q Consensus 168 l~~~i~~-----~~-~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~ 240 (407)
+++.+.. .+ +..++++-+ -+.-.|.+ .+++.+++|.++|++||++||+||+..+|+..+. .+....+.-
T Consensus 211 ~~~~~~~~e~~~~~~~iAAvivEP-iqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~---~~a~e~~gv 286 (456)
T 4atq_A 211 AKRAITMIEKQIGGDQVAAIIIEP-IQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGE---WFAVDHEGV 286 (456)
T ss_dssp HHHHHHHHHHHTCGGGEEEEEECS-SBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGTTC
T ss_pred HHHHHHHHHHhhcCCceEEEEecc-ccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccc---cccccccCC
Confidence 3333221 12 335555533 34445654 6788999999999999999999999999887652 222222211
Q ss_pred cCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHH
Q 015435 241 DGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKA 320 (407)
Q Consensus 241 ~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 320 (407)
..+++ +++|.+| .|+++|.+ ++. +++.+.+.......+++.+++++.++.+.|+-.. -+.
T Consensus 287 -~PDiv---t~gK~lg-gg~P~~av--~~~-----~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~--------~~~ 346 (456)
T 4atq_A 287 -VPDII---TMAKGIA-GGLPLSAI--TGR-----ADLLDAVHPGGLGGTYGGNPVACAAALAAIDTME--------QHD 346 (456)
T ss_dssp -CCSEE---EECGGGG-TTSSCEEE--EEE-----HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHH--------HTT
T ss_pred -CCchh---hhhhccc-CcCCceee--Eec-----HHHHhcccccCCCCCCCCChHHHHhhHHHHHHHh--------hcc
Confidence 12333 3689988 78999998 566 5555555444445566888999998888876321 113
Q ss_pred HHHHHHHHHHHHHHHHHhcC--CCC----CcccccCCceeEEe--c-CC----CH---HHHHHhHhhccEEEcCCC----
Q 015435 321 MADRIISMRQQLFDALSARG--TPG----DWSHIIKQIGMFTF--T-GL----NS---EQVAFMTKEYHIYMTSDG---- 380 (407)
Q Consensus 321 ~~~~~~~~~~~l~~~l~~~~--~~~----~~~~~~~~~~~~~~--~-~~----~~---~~~~~~l~~~gi~~~~gg---- 380 (407)
+.++.++..+++.+.|+++. .+. .+.-+...|.++.+ . +- +. ..+...+.++|+.+.++|
T Consensus 347 l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~ 426 (456)
T 4atq_A 347 LNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCGTYGN 426 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 34455555666666555431 000 01112223333322 1 11 22 223444455899987654
Q ss_pred --eEEec-CCCCCChhHHHHHHHHHHHh
Q 015435 381 --RISMA-GLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 381 --Ris~~-~~~~e~i~~~~~~l~~~l~~ 405 (407)
||... .++++++++++++|.++++.
T Consensus 427 ~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 427 VIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 66543 25889999999999999975
No 228
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.79 E-value=4.9e-18 Score=163.40 Aligned_cols=351 Identities=12% Similarity=0.091 Sum_probs=208.7
Q ss_pred cCCCCeeeeeeeeeecCCCccccchhHHHHHHHHhccccccccCC--CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEee
Q 015435 28 DTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYL--PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQ 105 (407)
Q Consensus 28 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~--~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~ 105 (407)
..++++||+..|....+.| ..++++++++.+++. .-...+.+. +..-..+|.+.+++.. .. ..+.+++
T Consensus 64 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~-~l~~~~~~~~~~~~~~~~lAe~L~~~~-p~-----~~~~v~f-- 133 (473)
T 4e3q_A 64 VNGRRYLDANSGLWNMVAG-FDHKGLIDAAKAQYE-RFPGYHAFFGRMSDQTVMLSEKLVEVS-PF-----DSGRVFY-- 133 (473)
T ss_dssp TTCCEEEETTTTTTTCTTC-SCCHHHHHHHHHHHH-HCCCCCCCTTEEEHHHHHHHHHHHHHS-SC-----SSCEEEE--
T ss_pred CCCCEEEEcccCHHHhhcc-CCCHHHHHHHHHHHH-hcccccccccccCHHHHHHHHHHHhhC-CC-----CccEEEE--
Confidence 4578999999987766667 667788888888886 111112221 1112334566666655 21 1268999
Q ss_pred cCCcccHHHHHHHHHHhhc-----CC-CeEEecCCCCCChHHHHhh-cCc-----------eeeEEEeec----CCCCCc
Q 015435 106 CLSGTGSLRVGAEFLARHY-----HQ-LTIYIPQPTWGNHPKVFTL-AGL-----------SVKTYRYYD----PATRGL 163 (407)
Q Consensus 106 t~g~t~a~~~~~~~~~~~~-----~g-d~Vi~~~p~y~~~~~~~~~-~G~-----------~~~~v~~~~----~~~~~~ 163 (407)
++||++|++.++++.+... ++ .+|+...-+|++....... .|. ....++..+ ......
T Consensus 134 ~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 213 (473)
T 4e3q_A 134 TNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGET 213 (473)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCC
T ss_pred eCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccch
Confidence 9999999999998876541 23 4688888888875443321 111 122222210 000000
Q ss_pred -------ChhhHHHHHHcC-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHH
Q 015435 164 -------NFQGLLEDLRAA-PSGAIVLLHACAHNPTGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQS 234 (407)
Q Consensus 164 -------d~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~ 234 (407)
..+++++.+.+. ++..+.+|...-+.-.|++ .+++.+++|.++|++||++||+||+..+|+..+ ..+.
T Consensus 214 ~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG---~~fa 290 (473)
T 4e3q_A 214 EEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG---NTWG 290 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTS---SSCH
T ss_pred hhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCccc---chhH
Confidence 123455555422 2333334424444445665 678899999999999999999999999998765 3344
Q ss_pred HHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhh---hhcccCCCChhHHHHHHHHhcChhhH
Q 015435 235 VRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLV---IRPMYSSPPIHGASIVATILKDSTMY 311 (407)
Q Consensus 235 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (407)
...+.- ..+++ +++|.++..++++|.+ ++. +++.+.+....... ....+++.+++++.++.+.|+-..
T Consensus 291 ~e~~gv-~PDi~---t~~K~l~gG~~Pl~av--~~~-~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~-- 361 (473)
T 4e3q_A 291 CVTYDF-TPDAI---ISSKNLTAGFFPMGAV--ILG-PELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVM-- 361 (473)
T ss_dssp HHHTTC-CCSEE---EECGGGGTTSSCCEEE--EEC-HHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHH--
T ss_pred HHhcCC-CCChH---HhcccccCCCCCcccc--ccc-HHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhc--
Confidence 433322 23333 3789998444899998 455 55555544332221 223455778888888888776321
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCceeEEec---------CCC-----HHHHHHhHhhccEEEc
Q 015435 312 KEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFT---------GLN-----SEQVAFMTKEYHIYMT 377 (407)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~~l~~~gi~~~ 377 (407)
-+.+.++.+++.++|.+.|+++.....+.-+...|.++.+- ..+ .+.+...+.++|+.+.
T Consensus 362 ------~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~ 435 (473)
T 4e3q_A 362 ------NEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICR 435 (473)
T ss_dssp ------HSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECE
T ss_pred ------cccHHHHHHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEE
Confidence 12344566677777887777653211122223333333321 111 2334455556899999
Q ss_pred CCC---eEEec-CCCCCChhHHHHHHHHHHHhh
Q 015435 378 SDG---RISMA-GLSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 378 ~gg---Ris~~-~~~~e~i~~~~~~l~~~l~~~ 406 (407)
+.| ||+.. .++++++++++++|.++++++
T Consensus 436 ~~g~~i~l~PPL~it~~eid~~~~~l~~al~~v 468 (473)
T 4e3q_A 436 PLGQSVVLCPPFILTEAQMDEMFDKLEKALDKV 468 (473)
T ss_dssp EETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 877 55432 258899999999999988763
No 229
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.76 E-value=2.5e-18 Score=171.96 Aligned_cols=297 Identities=12% Similarity=0.082 Sum_probs=178.8
Q ss_pred CCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeE
Q 015435 73 PIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKT 152 (407)
Q Consensus 73 ~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~ 152 (407)
|..-+.++++.+|+++ +.. ..+++ ++|+++++.++ +...+.+||.|+++.++|.++...+...|++++.
T Consensus 193 ~~g~i~eaE~~lA~~f-Ga~------~a~~v--~nGts~An~~a--i~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~ 261 (715)
T 3n75_A 193 HSGPHKEAEQYIARVF-NAD------RSYMV--TNGTSTANKIV--GMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIY 261 (715)
T ss_dssp TBTHHHHHHHHHHHHH-TCS------EEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEE
T ss_pred CcHHHHHHHHHHHHHh-CCC------CceEE--CcHHHHHHHHH--HHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEE
Confidence 4444788899999988 541 34555 77778998887 4556889999999999999999999999999999
Q ss_pred EEeecCCCCCc---------ChhhHHHHHHcCCCCc---EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc
Q 015435 153 YRYYDPATRGL---------NFQGLLEDLRAAPSGA---IVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY 220 (407)
Q Consensus 153 v~~~~~~~~~~---------d~~~l~~~i~~~~~~~---~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y 220 (407)
++.. .+.+++ |++.+++++.+.++++ ++++ ++| ||+|.+++ +++|+++|++++ +++||||
T Consensus 262 v~~~-~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~viv-t~p-n~~G~v~d---l~~I~ela~~~~--livDEAH 333 (715)
T 3n75_A 262 FRPT-RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVI-TNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAW 333 (715)
T ss_dssp ECCC-BCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEE-ESS-CTTSEEEC---HHHHHHHCCCSE--EEEECTT
T ss_pred Eecc-ccccccccCcccccCCHHHHHHHHhhCcCccCceEEEE-ECC-CCCCccCC---HHHHHHHhCcCc--EEEcccc
Confidence 9873 233443 8999999998654333 5666 777 99999886 566666677663 7899999
Q ss_pred cccc-CCCCCchhHHHHHHHHc--CCc-EEEEEecCccccccCC-CcceeEEeecChhhHHHHHHHHhhhhhcccCCCCh
Q 015435 221 QGFA-SGSLDADAQSVRMFVAD--GGE-CLVAQSYAKNMGLYGE-RVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPI 295 (407)
Q Consensus 221 ~~~~-~~~~~~~~~~~~~~~~~--~~~-~i~~~s~sK~~~~~G~-r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (407)
.... +.+. ......+... .+. ++++.|++|+++ |+ ..|++ +++++-....+...+. . ..+.+++.
T Consensus 334 ~~~~~f~~~---~~~~~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i--~v~~~i~~~~~~~~~~-~--~~STSpsy 403 (715)
T 3n75_A 334 VPYTNFSPI---YEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMI--HVKGDVNEETFNEAYM-M--HTTTSPHY 403 (715)
T ss_dssp CTTGGGSGG---GTTSSTTSSSCCTTCEEEEEECHHHHSS--CCTTCEEE--EEESCCCHHHHHHHHH-H--TSCSSCCH
T ss_pred ccccccCCc---cccccccccCcCCCEEEEEEeccccccc--CCCCeeEE--EeCchhhHHHHHHHHH-h--hcCCCchH
Confidence 7553 3211 0000001111 233 366999999965 55 34666 4554322222322222 2 12335666
Q ss_pred hHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCC-ccc-------------------------
Q 015435 296 HGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGT--PGD-WSH------------------------- 347 (407)
Q Consensus 296 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~-~~~------------------------- 347 (407)
+.+.++..+++-.. ...-+++++++.++.+++++.|++++. ..+ +.+
T Consensus 404 ~~~AsldaA~~~~~-----~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~ 478 (715)
T 3n75_A 404 GIVASTETAAAMMK-----GNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKN 478 (715)
T ss_dssp HHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTT
T ss_pred HHHHHHHHHHHHHH-----hhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccc
Confidence 55555544432110 011234556666666666666655421 000 000
Q ss_pred -------ccCCceeEEe-----------cCCCHHHHHHhHhhccEEEcCCC--eE----EecCCCCCChhHHHHHHHHHH
Q 015435 348 -------IIKQIGMFTF-----------TGLNSEQVAFMTKEYHIYMTSDG--RI----SMAGLSSKTVPHLTDAIHAAV 403 (407)
Q Consensus 348 -------~~~~~~~~~~-----------~~~~~~~~~~~l~~~gi~~~~gg--Ri----s~~~~~~e~i~~~~~~l~~~l 403 (407)
..|.--.... .++++..+.+.|+++||.+...+ .| +++. +++++++++++|.++-
T Consensus 479 ~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~-~~~~~~~L~~aL~~~~ 557 (715)
T 3n75_A 479 IDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGI-DKTKALSLLRALTDFK 557 (715)
T ss_dssp CCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTC-CHHHHHHHHHHHHHHH
T ss_pred cccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCC-CHHHHHHHHHHHHHHH
Confidence 0000000011 13456677777788899887765 33 3443 6677888888887754
Q ss_pred H
Q 015435 404 T 404 (407)
Q Consensus 404 ~ 404 (407)
+
T Consensus 558 ~ 558 (715)
T 3n75_A 558 R 558 (715)
T ss_dssp H
T ss_pred H
Confidence 3
No 230
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.73 E-value=7.3e-18 Score=157.51 Aligned_cols=313 Identities=15% Similarity=0.113 Sum_probs=192.0
Q ss_pred cccchhHHHHHHHHhcccc---cc---ccCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceEEeec-CCcccHHHHHHH
Q 015435 48 PLVLNVVRKAEQLLVNDQS---RV---KEYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVTTVQC-LSGTGSLRVGAE 118 (407)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~---~~---~~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t-~g~t~a~~~~~~ 118 (407)
|.|+++++++...+.+... .. +..++ ..-+.+.|+.+++++ +.. ++++|+| + +|+|+++++++
T Consensus 23 ~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll-~~~----~~~evif--~t~~~T~a~n~a~- 94 (377)
T 3e77_A 23 MLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELL-AVP----DNYKVIF--LQGGGCGQFSAVP- 94 (377)
T ss_dssp CCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHH-TCC----TTEEEEE--ESSHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHh-CCC----CCCeEEE--EcCchHHHHHHHH-
Confidence 5677777777766641111 10 11111 123677888999988 432 1246777 6 78999999994
Q ss_pred HHHhhcC--CCeEEecCCCCCCh--HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCC
Q 015435 119 FLARHYH--QLTIYIPQPTWGNH--PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVD 194 (407)
Q Consensus 119 ~~~~~~~--gd~Vi~~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~ 194 (407)
...+.+ ||+|++...++... ...++..|..++.++. +++++.++++++..+. ++++++.+ ++..|.||++
T Consensus 95 -~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~--~~~~~~~~~~~~~~i~--~~t~lV~~-~h~et~tG~~ 168 (377)
T 3e77_A 95 -LNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPK--LGSYTKIPDPSTWNLN--PDASYVYY-CANETVHGVE 168 (377)
T ss_dssp -HHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCC--CSSSCSCCCGGGCCCC--TTCSCEEE-ESEETTTTEE
T ss_pred -HhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEecc--CCCcCCCCChHHhccC--CCccEEEE-eCccCchheE
Confidence 444544 89988776654433 3345567888777776 3455677777766555 66777777 6667888998
Q ss_pred CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhh
Q 015435 195 PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDV 274 (407)
Q Consensus 195 ~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~ 274 (407)
.+. +|+++|+++++|.+.+ +...+.+.+ . .+ ++..|..|.+|.+| +|+++ .+. ++
T Consensus 169 ~pi--------i~~~~~~~~~vD~~q~-~g~~~id~~--------~-~~--~~~~s~~K~~gp~G--~g~l~--~~~-~~ 223 (377)
T 3e77_A 169 FDF--------IPDVKGAVLVCDMSSN-FLSKPVDVS--------K-FG--VIFAGAQKNVGSAG--VTVVI--VRD-DL 223 (377)
T ss_dssp CSS--------CCCCTTCCEEEECTTT-TTSSCCCGG--------G-CS--EEEEEGGGTTSCTT--CEEEE--EET-TS
T ss_pred chh--------hhccCCCEEEEEcccc-cCCCCCchh--------h-cC--EEEEecccccCCCc--cEEEE--EcH-HH
Confidence 875 3778999999999854 333222211 1 12 46789999998777 56763 332 21
Q ss_pred HHHHH----HHH--hhh--hhcccCCCChhHHHHHHHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 015435 275 ASRVE----SQL--KLV--IRPMYSSPPIHGASIVATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTPGDW 345 (407)
Q Consensus 275 ~~~~~----~~~--~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 345 (407)
.+++. ..+ ... ......+++..+..++..+++-.. .. .+++..++.++.++++++.|++++. +
T Consensus 224 l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~-----~~GG~~~i~~~~~~l~~~l~~~L~~~~g---~ 295 (377)
T 3e77_A 224 LGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIK-----NNGGAAAMEKLSSIKSQTIYEIIDNSQG---F 295 (377)
T ss_dssp CSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHHHTSTT---S
T ss_pred HhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHHHHHHHHhcCC---c
Confidence 11000 000 000 011233566666666665554221 12 3778889999999999999998732 3
Q ss_pred cccc----CCce---eEEecCCCH--H---HHHHhHhhccEEEcCC----C--eEEecC-CCCCChhHHHHHHHHHHHhh
Q 015435 346 SHII----KQIG---MFTFTGLNS--E---QVAFMTKEYHIYMTSD----G--RISMAG-LSSKTVPHLTDAIHAAVTRM 406 (407)
Q Consensus 346 ~~~~----~~~~---~~~~~~~~~--~---~~~~~l~~~gi~~~~g----g--Ris~~~-~~~e~i~~~~~~l~~~l~~~ 406 (407)
.... ...+ .|.+.+++. + .+...++++||.+.+| | |+|+.. .+++|++++++.|++++++.
T Consensus 296 ~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 296 YVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp EECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 3111 1222 233345432 1 2233344689999887 3 999876 47899999999999998865
Q ss_pred C
Q 015435 407 G 407 (407)
Q Consensus 407 ~ 407 (407)
+
T Consensus 376 ~ 376 (377)
T 3e77_A 376 Q 376 (377)
T ss_dssp C
T ss_pred C
Confidence 3
No 231
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.72 E-value=1.9e-17 Score=169.65 Aligned_cols=343 Identities=11% Similarity=0.132 Sum_probs=196.1
Q ss_pred CeeeeeeeeeecCCCccc-cchhHHHHHHHHhccccccc--cCCCCCCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCC
Q 015435 32 VKLNLGVGAYRTEEGKPL-VLNVVRKAEQLLVNDQSRVK--EYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLS 108 (407)
Q Consensus 32 ~~i~l~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~y~~~~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g 108 (407)
++||+..|++..+.| .. .+++++++.+++. .-.+.. ++. ..-..+|.+++++.. +... .+.+++ ++|
T Consensus 381 ~ylD~~sg~~~~~lG-h~~~p~i~~Ai~~Q~~-~l~h~~~~~~~-~~~~~~Lae~L~~~~-p~~~----l~~vff--~~S 450 (831)
T 4a0g_A 381 QQFDACASWWTQGPD-PTFQAELAREMGYTAA-RFGHVMFPENV-YEPALKCAELLLDGV-GKGW----ASRVYF--SDN 450 (831)
T ss_dssp EEEETTHHHHTCCCC-HHHHHHHHHHHHHHHH-HHSSCCCTTEE-CHHHHHHHHHHHHTT-TTTT----CCEEEE--ESS
T ss_pred heeeecccHhhcCCC-CCCCHHHHHHHHHHHh-hcccccccccC-CHHHHHHHHHHHHhC-CCCC----CCEEEE--CCC
Confidence 799999998877777 66 7788888888875 111110 111 112335556666554 2110 268999 999
Q ss_pred cccHHHHHHHHH-Hhh--cCC------------CeEEecCCCCCChHHH-HhhcCce---------------e-------
Q 015435 109 GTGSLRVGAEFL-ARH--YHQ------------LTIYIPQPTWGNHPKV-FTLAGLS---------------V------- 150 (407)
Q Consensus 109 ~t~a~~~~~~~~-~~~--~~g------------d~Vi~~~p~y~~~~~~-~~~~G~~---------------~------- 150 (407)
|++|++.++++. +.. ..| .+||...-+|++.... +...|.. +
T Consensus 451 GSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~ 530 (831)
T 4a0g_A 451 GSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTV 530 (831)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEE
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccc
Confidence 999999999887 322 122 2688888888755433 3322211 0
Q ss_pred ------eEEEeecCCCCC--------c-C------------------hhhHHHHHHc-----CCC-CcEEEEecCC-CCC
Q 015435 151 ------KTYRYYDPATRG--------L-N------------------FQGLLEDLRA-----APS-GAIVLLHACA-HNP 190 (407)
Q Consensus 151 ------~~v~~~~~~~~~--------~-d------------------~~~l~~~i~~-----~~~-~~~v~i~~~p-~NP 190 (407)
..++. +..+. . + .+.+++.+.+ .+. ..++++ -.- ++.
T Consensus 531 ~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~-Epvvqg~ 607 (831)
T 4a0g_A 531 FLSNGSWNISL--PESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALII-EPVIHGA 607 (831)
T ss_dssp EEETTEEEEEC--CTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEE-CCSEETT
T ss_pred cccCCceEecC--CccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEE-ecccccC
Confidence 01122 11000 0 1 2456666642 123 344444 332 677
Q ss_pred CCCC-CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCccccccC-CCcceeEEe
Q 015435 191 TGVD-PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYG-ERVGALSIV 268 (407)
Q Consensus 191 tG~~-~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~v 268 (407)
.|.. ++++.+++|.++|++||++||+||++.+|+..+. .+....+. -..+++ +++|.++ .| +++|++ +
T Consensus 608 gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~---~fa~e~~g-v~PDii---tlsK~L~-gG~~Plgav--~ 677 (831)
T 4a0g_A 608 GGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV---ETTTELLG-CKPDIA---CFAKLLT-GGMVPLAVT--L 677 (831)
T ss_dssp TTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB---SSTHHHHS-SCCSEE---EECGGGG-TTSSCCEEE--E
T ss_pred CCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC---chhhHhcC-CCCcEE---EEecccc-cCccCcEEE--E
Confidence 7776 5889999999999999999999999999987653 22322222 122333 5999998 47 799999 5
Q ss_pred ecChhhHHHHHHHHhhh------hhcccCCCChhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH-HHHHHHHHHHhcCC
Q 015435 269 CKTEDVASRVESQLKLV------IRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIIS-MRQQLFDALSARGT 341 (407)
Q Consensus 269 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~ 341 (407)
++ +++.+.+... ....+++.+++++.++.+.|+...- +.+.+.+.+..+++++ ..+.+.+.+.+.+.
T Consensus 678 ~~-----~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~-~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~ 751 (831)
T 4a0g_A 678 AT-----DAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKD-PETNHNITSQGKTLRELWDEELVQQISSHSA 751 (831)
T ss_dssp EC-----HHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHC-TTTCTTBCTTSSBBCCCSCHHHHHHHHHSTT
T ss_pred EC-----HHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 76 5555555432 1224457788888888777652110 0000001100111111 01233444544442
Q ss_pred CCCcccccCCceeEEecCC--C----------HHHHHHhHhhccEEEcCCC---eEEec-CCCCCChhHHHHHHHHHHHh
Q 015435 342 PGDWSHIIKQIGMFTFTGL--N----------SEQVAFMTKEYHIYMTSDG---RISMA-GLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~--~----------~~~~~~~l~~~gi~~~~gg---Ris~~-~~~~e~i~~~~~~l~~~l~~ 405 (407)
+..+...|.++. +.+ + ...+...+.++||.+.|.| ||+.. .++++++++++++|.+++++
T Consensus 752 ---v~~vrg~Gl~~~-iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~g~~lrl~pp~~~t~e~id~~~~~l~~~l~~ 827 (831)
T 4a0g_A 752 ---VQRVVVIGTLFA-LELKADASNSGYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGE 827 (831)
T ss_dssp ---EEEEEEETTEEE-EEEC---------CHHHHHHHHHHHHTTEECCCBTTEEEEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred ---ceeEeecccEEE-EEEecCccccccchHHHHHHHHHHHHCCcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 333334444333 222 1 1234445556899999987 66532 25889999999999999887
Q ss_pred hC
Q 015435 406 MG 407 (407)
Q Consensus 406 ~~ 407 (407)
++
T Consensus 828 l~ 829 (831)
T 4a0g_A 828 FN 829 (831)
T ss_dssp TC
T ss_pred hc
Confidence 64
No 232
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.70 E-value=1.6e-16 Score=147.81 Aligned_cols=318 Identities=13% Similarity=0.115 Sum_probs=190.2
Q ss_pred CCeeeeeeeeeecCCCccccchhHHHHHHHHhcc---ccccc---cCCC--CCCcHHHHHHHHHHHhCCCCCCCCCCceE
Q 015435 31 PVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVND---QSRVK---EYLP--IVGLVDFNKLSAKLILGADSPAIKDNRVT 102 (407)
Q Consensus 31 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~y~~--~~g~~~l~~~~a~~~~~~~~~~~~~~~i~ 102 (407)
.+.++|+.|- .+.|+.+++++...+.+. +...+ +.++ ..-+++.|+.+++++ +... +++|+
T Consensus 4 ~~~~~f~pgp------t~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll-~~~~----~~~v~ 72 (361)
T 3m5u_A 4 MRKINFSAGP------STLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLY-ELND----DYEVL 72 (361)
T ss_dssp CCCEECCSSS------CCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHH-TCCT----TEEEE
T ss_pred cceEeecCCC------CCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHh-CCCC----CceEE
Confidence 4566777552 155667766666555310 01111 1111 123677888899988 4321 23555
Q ss_pred EeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC--hHHHHhhcCceeeEEEeecCCCCC--cChhhHHHHHHcCCCC
Q 015435 103 TVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN--HPKVFTLAGLSVKTYRYYDPATRG--LNFQGLLEDLRAAPSG 178 (407)
Q Consensus 103 ~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~--~d~~~l~~~i~~~~~~ 178 (407)
|+ |+|+|+++++++ ...+ +||++.+...+... +...++..|++++.++.+ ++.. ++++. + +. +++
T Consensus 73 f~-t~~~T~a~n~~~--~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~--~~g~~~~~~~~--~-l~--~~t 141 (361)
T 3m5u_A 73 FL-QGGASLQFAMIP--MNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASS--EESNFDHIPRV--E-FS--DNA 141 (361)
T ss_dssp EE-SSHHHHHHHHHH--HHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEEC--TTTTSCSCCCC--C-CC--TTS
T ss_pred EE-cCcHHHHHHHHH--HhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecc--cCcCCCcCChh--h-cC--CCC
Confidence 42 999999999994 4445 78865322222222 233455779999999983 3332 46665 3 65 677
Q ss_pred cEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHHcCCcEEEEEecCcccccc
Q 015435 179 AIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLVAQSYAKNMGLY 258 (407)
Q Consensus 179 ~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 258 (407)
+++.+ ++.+|.||++.+. | ++ +|+++++|.+.+ +...+.+.+ +..+++.|..|.+|.+
T Consensus 142 ~lv~~-~~~e~~tG~~~~~-----i---~~-~~~~~~vD~~q~-~g~~~id~~-----------~~d~~~~s~~K~~gp~ 199 (361)
T 3m5u_A 142 DYAYI-CSNNTIYGTQYQN-----Y---PK-TKTPLIVDASSD-FFSRKVDFS-----------NIALFYGGVQKNAGIS 199 (361)
T ss_dssp SEEEE-ESEETTTTEECSS-----C---CC-CSSCEEEECGGG-TTSSCCCCT-----------TEEEEEEETTTTSSCT
T ss_pred CEEEE-eCCCCCcceeCCc-----c---cc-cCCEEEEEcccc-cCCCCCCcc-----------cCCEEEEechhccCCC
Confidence 88777 6677888998652 3 33 499999999754 433222211 2247888999999877
Q ss_pred CCCcceeEEeecChhhHHHHHH----HH---hhh--hhcccCCCChhHHHHHHHHhcChhhHHhHHH-HHHHHHHHHHHH
Q 015435 259 GERVGALSIVCKTEDVASRVES----QL---KLV--IRPMYSSPPIHGASIVATILKDSTMYKEWTL-ELKAMADRIISM 328 (407)
Q Consensus 259 G~r~G~~~~v~~~~~~~~~~~~----~~---~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 328 (407)
| +|++ +.+ +++.+++.. .+ ... ....+.+++..+..++..+++-.. .. .+++..++.++.
T Consensus 200 G--~g~l--~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~-----~~gG~~~i~~~~~~l 269 (361)
T 3m5u_A 200 G--LSCI--FIR-KDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLL-----NQGGLDKVHEKNSQK 269 (361)
T ss_dssp T--CEEE--EEE-HHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH-----TTTCHHHHHHHHHHH
T ss_pred c--cEEE--EEc-HHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHH-----HccCHHHHHHHHHHH
Confidence 6 5777 344 443333321 00 000 111223566666665555554211 01 267788899999
Q ss_pred HHHHHHHHHhcCCCCCc-ccc-cC--C-ceeEE--ecC---CCHHHHHHhHhhccEEEcCC----C--eEEecC-CCCCC
Q 015435 329 RQQLFDALSARGTPGDW-SHI-IK--Q-IGMFT--FTG---LNSEQVAFMTKEYHIYMTSD----G--RISMAG-LSSKT 391 (407)
Q Consensus 329 ~~~l~~~l~~~~~~~~~-~~~-~~--~-~~~~~--~~~---~~~~~~~~~l~~~gi~~~~g----g--Ris~~~-~~~e~ 391 (407)
++++++.|++++. + ... .+ . .+... +.+ ++ +.+...|+++||.+.+| | |+|+.. .+++|
T Consensus 270 ~~~l~~~L~~~~g---~~~~~~~~~~rs~~ivsf~~~~~~~~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~ed 345 (361)
T 3m5u_A 270 ATMLYECIDLSNG---FYKGHADKKDRSLMNVSFNIAKNKDLE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQ 345 (361)
T ss_dssp HHHHHHHHHTSTT---SEEESSCGGGBCSSEEEEEESSCTTHH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHH
T ss_pred HHHHHHHHHHCCC---eeeccCCHHHcCCeEEEEECCCchhhh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHH
Confidence 9999999998862 2 221 11 1 22332 233 23 23446667789999887 3 999876 47899
Q ss_pred hhHHHHHHHHHHHhh
Q 015435 392 VPHLTDAIHAAVTRM 406 (407)
Q Consensus 392 i~~~~~~l~~~l~~~ 406 (407)
++++++.|+++.++.
T Consensus 346 Id~l~~al~~~~~~~ 360 (361)
T 3m5u_A 346 VKTLCEFMKEFQGKY 360 (361)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
No 233
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.68 E-value=1.9e-16 Score=148.77 Aligned_cols=286 Identities=13% Similarity=0.062 Sum_probs=176.9
Q ss_pred CCcHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCCh--HHHHhhcCceeeE
Q 015435 75 VGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNH--PKVFTLAGLSVKT 152 (407)
Q Consensus 75 ~g~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~--~~~~~~~G~~~~~ 152 (407)
.-+++.|+.+++++ +.. ++++|+++ |+|+|+++++++ ...+.+||+|++...++..+ ...++..| ++..
T Consensus 72 ~~~~~ar~~la~ll-~~~----~~~evif~-t~~~T~a~n~ai--~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~ 142 (386)
T 3qm2_A 72 QVAEEAEQDFRDLL-NIP----SNYKVLFC-HGGGRGQFAGVP--LNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQI 142 (386)
T ss_dssp -CCHHHHHHHHHHH-TCC----TTEEEEEE-ESCTTHHHHHHH--HHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEE
T ss_pred HHHHHHHHHHHHHh-CCC----CCceEEEE-cCCchHHHHHHH--HhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEE
Confidence 45889999999999 432 12467761 489999999994 55578999987555443333 33445678 8888
Q ss_pred EEee-cCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCch
Q 015435 153 YRYY-DPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDAD 231 (407)
Q Consensus 153 v~~~-~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~ 231 (407)
++.+ .+++..++++++++.+. +++++|++ ++..|.||+++. ++++|. +|+++++|.+.+ ++..+.+.+
T Consensus 143 v~~~~~~~G~~~~~~~~~~~l~--~~t~lV~~-~h~et~tG~~i~--pi~~i~-----~g~~~~vDa~qs-~g~~pidv~ 211 (386)
T 3qm2_A 143 IDAKITVDGKRAVKPMREWQLS--DNAAYLHY-CPNETIDGIAID--ETPDFG-----PEVVVTADFSST-ILSAPLDVS 211 (386)
T ss_dssp EECEEEETTEEEECCGGGCCCC--TTCSCEEE-CSEETTTTEECC--CCCCCC-----TTCCEEEECTTT-TTSSCCCGG
T ss_pred EecCcccCCCCCCchHHHhhcC--CCCcEEEE-ECCcCCcCEecC--chhhhc-----CCCEEEEEcccc-cCCCCCCcc
Confidence 8873 02333378888877776 67788776 666778899633 344553 799999999854 333222211
Q ss_pred hHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHH-------H---HHHHhhhhhcccCCCChhHHHHH
Q 015435 232 AQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASR-------V---ESQLKLVIRPMYSSPPIHGASIV 301 (407)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~ 301 (407)
. .+ +...|..|.+|.+| +|+++ .+ +++.++ + ........ ...+++..+..++
T Consensus 212 --------~-~~--~~~~s~hK~lGP~G--~g~l~--v~-~~~~~~~~~~~p~~~~~~~~~~~~~--~~gTp~v~~i~~l 273 (386)
T 3qm2_A 212 --------R-YG--VIYAGAQKNIGPAG--LTLVI--VR-EDLLGKAHESCPSILDYTVLNDNDS--MFNTPPTFAWYLS 273 (386)
T ss_dssp --------G-CS--EEEEETTTTTCCTT--EEEEE--EE-GGGCSCCCTTSCGGGCHHHHHHC---------CCSHHHHH
T ss_pred --------c-cC--EEEEecccccCCCc--cEEEE--EC-HHHHhhhcccCCcHHHHHHHhhcCC--CCCCCcHHHHHHH
Confidence 1 12 45689999998766 57773 43 222110 0 01111111 1225566666666
Q ss_pred HHHhcChhhHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-c--CCc-eeE--EecC--CCHHHHHHhHhhc
Q 015435 302 ATILKDSTMYKEWTL-ELKAMADRIISMRQQLFDALSARGTPGDWSHI-I--KQI-GMF--TFTG--LNSEQVAFMTKEY 372 (407)
Q Consensus 302 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~--~~~-~~~--~~~~--~~~~~~~~~l~~~ 372 (407)
..+++-.. .. .+++..++.++.++++++.|++++. +... . ... +.. .+.+ ++.+++.. |+++
T Consensus 274 ~~Al~~~~-----~~gG~~~i~~~~~~l~~~l~~~l~~~~~---~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~-L~~~ 344 (386)
T 3qm2_A 274 GLVFKWLK-----AQGGVAAMHKINQQKAELLYGVIDNSDF---YRNDVAQANRSRMNVPFQLADNTLDKVFLEE-SFAA 344 (386)
T ss_dssp HHHHHHHH-----HHTHHHHHHHHHHHHHHHHHHHHHTCSS---EECCBCGGGBCSSEEEEEESSGGGHHHHHHH-HHHT
T ss_pred HHHHHHHH-----HhcCHHHHHHHHHHHHHHHHHHHHHCCC---cccCCCHHHcCceEEEEECCCccccHHHHHH-HHHC
Confidence 65554221 12 3778889999999999999998762 1211 1 111 222 2232 34333444 6778
Q ss_pred cEEEcCC----C--eEEecC-CCCCChhHHHHHHHHHHHhhC
Q 015435 373 HIYMTSD----G--RISMAG-LSSKTVPHLTDAIHAAVTRMG 407 (407)
Q Consensus 373 gi~~~~g----g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~ 407 (407)
||.+.+| | |+|+.. .+++|++++++.|+++.++.|
T Consensus 345 gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~~~ 386 (386)
T 3qm2_A 345 GLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERRHG 386 (386)
T ss_dssp TEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 9999876 3 999876 478999999999999988754
No 234
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.63 E-value=1.2e-14 Score=135.01 Aligned_cols=293 Identities=15% Similarity=0.184 Sum_probs=178.8
Q ss_pred cHHHHHHHHHHHhCCCCCCCCCCce-EEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH--------hhc-
Q 015435 77 LVDFNKLSAKLILGADSPAIKDNRV-TTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF--------TLA- 146 (407)
Q Consensus 77 ~~~l~~~~a~~~~~~~~~~~~~~~i-~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~--------~~~- 146 (407)
++.+....++.+|+.... +- +=+|..||+.|+..+ +.++++|||+|+..+....+|...- ...
T Consensus 101 iE~la~~rak~lF~a~~A-----~w~VNVQP~SGs~AN~av--y~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg 173 (490)
T 3ou5_A 101 IELLCQRRALEAFDLDPA-----QWGVNVQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATS 173 (490)
T ss_dssp HHHHHHHHHHHHTTCCTT-----TEEEECCCSSHHHHHHHH--HHHHCC-CCCEECBC----------------------
T ss_pred HHHHHHHHHHHHhCCCcc-----ccCCCCCcCCHHHHHHHH--HHHHcCCCCEEEecccCCCCcccccccCCCccccccc
Confidence 445555555556565322 11 125688899999988 5777999999999997776654321 112
Q ss_pred -CceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc-cccc
Q 015435 147 -GLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY-QGFA 224 (407)
Q Consensus 147 -G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y-~~~~ 224 (407)
-.+.+.+++ +++++.+|.+++++...+. +.++|++ ..-.+|- .-|++++.++|++.|.+|++|.++ ++++
T Consensus 174 ~~~~~~~Y~v-d~~t~~IDyd~~~~~A~~~-kPklIi~-G~SaY~r-----~id~~~~reIAd~vGA~Lm~DmAHiaGLV 245 (490)
T 3ou5_A 174 IFFESMPYKL-NPKTGLIDYNQLALTARLF-RPRLIIA-GTSAYAR-----LIDYARMREVCDEVKAHLLADMAHISGLV 245 (490)
T ss_dssp ------CBCE-ETTTTEECHHHHHHHHHHH-CCSEEEE-CCSSCCS-----CCCHHHHHHHHHHHTCEEEEECGGGHHHH
T ss_pred cccccccccc-CCCCCcccHHHHHHHHhhc-CCCeEEE-CCccCcc-----ccCHHHHHHHHhhcccEEEechhhhhhhh
Confidence 235666667 4667889999999988743 3455544 4434443 337888999999999999999997 6666
Q ss_pred CCCCCchhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChh----------hHHHHHHHHhhhhhcccCCCC
Q 015435 225 SGSLDADAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTED----------VASRVESQLKLVIRPMYSSPP 294 (407)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 294 (407)
..+.-+.+. +. ..++..|..|++ +|-|-|.| ++.++. ....+.+++.....+...+.|
T Consensus 246 A~g~~psP~------~~--ADvVTtTTHKTL--rGPrGG~I--l~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp 313 (490)
T 3ou5_A 246 AAKVIPSPF------KH--ADIVTTTTHKTL--RGARSGLI--FYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGP 313 (490)
T ss_dssp HTTSSCCGG------GT--CSEEEEESSSTT--CSCSCEEE--EEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSC
T ss_pred cccccCCcc------cc--ceEEeccccccc--cCCCceEE--EeccccccccccccchhHHHHHHHHHhhcCccccccc
Confidence 554322211 11 347788899986 68898888 566420 000244455555555444555
Q ss_pred hhHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCc-eeEEec-----CCCHHHHHHh
Q 015435 295 IHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQI-GMFTFT-----GLNSEQVAFM 368 (407)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~ 368 (407)
.....++.++--... +....+...+++.+|.+.|.+.|.+.| +.++.... +-.+++ +++...+...
T Consensus 314 ~~h~IAAkAVaf~Ea----~~p~fk~Ya~qVv~NAkaLA~~L~~~G----~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~ 385 (490)
T 3ou5_A 314 HNHAIAAVAVALKQA----CTPMFREYSLQVLKNARAMADALLERG----YSLVSGGTDNHLVLVDLRPKGLDGARAERV 385 (490)
T ss_dssp CHHHHHHHHHHHHHH----HSHHHHHHHHHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----HhHhHHHHHHHHHHHHHHHHHHHHhCC----CeeecCCCCceEEEEeccccCCCHHHHHHH
Confidence 555555544311121 223456666777889999999999998 56553211 112223 5578889999
Q ss_pred HhhccEEEcC------------CC-eEEec-----CCCCCChhHHHHHHHHHHH
Q 015435 369 TKEYHIYMTS------------DG-RISMA-----GLSSKTVPHLTDAIHAAVT 404 (407)
Q Consensus 369 l~~~gi~~~~------------gg-Ris~~-----~~~~e~i~~~~~~l~~~l~ 404 (407)
|++.||.+.. +| ||... +..++|++++.+.|.++++
T Consensus 386 Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 386 LELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp HHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999998842 24 88643 2577889999999888764
No 235
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.61 E-value=6.4e-14 Score=130.68 Aligned_cols=302 Identities=12% Similarity=0.040 Sum_probs=174.7
Q ss_pred cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC----CCeEEecCCCCCChHHHHhhcCceeeE
Q 015435 77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH----QLTIYIPQPTWGNHPKVFTLAGLSVKT 152 (407)
Q Consensus 77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~----gd~Vi~~~p~y~~~~~~~~~~G~~~~~ 152 (407)
+..|.+.++.-+...-+.+ .....++ ++|+|+++.++ ++..+.+ +|.||++..++.+....+..+|+++++
T Consensus 114 l~~ltn~l~ld~L~~~G~~-~~~~~fl--VnGsTgg~lam--ilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~ 188 (501)
T 3hl2_A 114 LNKITNSLVLDIIKLAGVH-TVANCFV--VPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVV 188 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCT-TCCEEEE--ESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCC-CCCcEEE--ECcHHHHHHHH--HHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEE
Confidence 4556555444332333332 1235677 99999887777 3555553 499999999999999999999999999
Q ss_pred EEee-cCCCCCcChhhHHHHHHcCC-CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435 153 YRYY-DPATRGLNFQGLLEDLRAAP-SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA 230 (407)
Q Consensus 153 v~~~-~~~~~~~d~~~l~~~i~~~~-~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~ 230 (407)
++.. +++..++|++++++++.+.+ ...++++.+.+.|..+. .+++++|+++|++||+++++|+||...... .
T Consensus 189 V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~---~ddI~eIaeIch~~gIpllVDeAhGah~~~---~ 262 (501)
T 3hl2_A 189 IENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRV---PDRLEELAVICANYDIPHIVNNAYGVQSSK---C 262 (501)
T ss_dssp ECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBC---CCCHHHHHHHHHHHTCCEEEECTTCTTCHH---H
T ss_pred EeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcc---cccHHHHHHHHHHcCCeEEEeCcchhhhhh---h
Confidence 8752 33357899999999998653 23333332333443333 347999999999999999999999755421 0
Q ss_pred hhHHHHHHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHHHHHHhhhhhcccCCCChhHHHHHHHHhcChhh
Q 015435 231 DAQSVRMFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRVESQLKLVIRPMYSSPPIHGASIVATILKDSTM 310 (407)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
...+ ......+...+++.|..|.+-.+ +. |+++ ...++++.+++...+. ...++.+.....++...+.
T Consensus 263 ~~lp-~sA~~~GrAD~vVqS~HK~llvp-IG-G~ii-~~~d~e~l~~~~~~yP----Gr~S~Spsldl~~tLL~lG---- 330 (501)
T 3hl2_A 263 MHLI-QQGARVGRIDAFVQSLDKNFMVP-VG-GAII-AGFNDSFIQEISKMYP----GRASASPSLDVLITLLSLG---- 330 (501)
T ss_dssp HHHH-HHHHHHSCCCEEEEEHHHHHCCC-SS-CEEE-EESCHHHHHHHHHTSC----SCBCSHHHHHHHHHHHHHH----
T ss_pred hhhH-HHHHhcCCCcEEEecccccceee-cC-ceEE-EeCCHHHHHHHHHhCC----CCCCCcHHHHHHHHHHHHH----
Confidence 1111 11223334667889999997544 22 3341 4667665554322110 0011223332333332222
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccC---CceeEEec-CCC------HHHHHHhHhhccE---EEc
Q 015435 311 YKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIK---QIGMFTFT-GLN------SEQVAFMTKEYHI---YMT 377 (407)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~-~~~------~~~~~~~l~~~gi---~~~ 377 (407)
.+..+++.++..++.++|.+.|+++....+-.+... ..++-+.+ .+. .-.+-.+|-.++| .+.
T Consensus 331 ----r~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv 406 (501)
T 3hl2_A 331 ----SNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVV 406 (501)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEE
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceee
Confidence 244566667777777888887776521111122211 12221112 221 2233445544444 333
Q ss_pred C-C-------------C---------eEEec---CCCCCChhHHHHHHHHHHHh
Q 015435 378 S-D-------------G---------RISMA---GLSSKTVPHLTDAIHAAVTR 405 (407)
Q Consensus 378 ~-g-------------g---------Ris~~---~~~~e~i~~~~~~l~~~l~~ 405 (407)
+ + | -++.. +++++|++.++++|.+++.+
T Consensus 407 ~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~ 460 (501)
T 3hl2_A 407 PLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKA 460 (501)
T ss_dssp CTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3 2 1 34332 26889999999999999864
No 236
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.55 E-value=6.3e-13 Score=125.61 Aligned_cols=186 Identities=12% Similarity=0.017 Sum_probs=118.4
Q ss_pred cHHHHHHHHHHHhCCCCCCCCCCceEEeecCCcccHHHHHHHHHHhhcC----CCeEEecCCCCCChHHHHhhcCceeeE
Q 015435 77 LVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH----QLTIYIPQPTWGNHPKVFTLAGLSVKT 152 (407)
Q Consensus 77 ~~~l~~~~a~~~~~~~~~~~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~----gd~Vi~~~p~y~~~~~~~~~~G~~~~~ 152 (407)
...+.+.+..++...-+.+ +..-.++ ++|+|++..++. +..+.+ ++.|+++..+|.+..+++..+|++++.
T Consensus 96 ~~~~e~~~~~~~~~~lGlp-~~~~~~l--V~GaT~~~~a~~--L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~ 170 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAGVH-SVASCFV--VPMATGMSLTLC--FLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVV 170 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCT-TCCEEEE--ESSCHHHHHHHH--HHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCC-CCceEEE--ECCHHHHHHHHH--HHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEE
Confidence 4455555555553322221 1133567 899985555552 444443 899999999999999999999999888
Q ss_pred EEee-cCCCCCcChhhHHHHHHcCC-CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCc
Q 015435 153 YRYY-DPATRGLNFQGLLEDLRAAP-SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDA 230 (407)
Q Consensus 153 v~~~-~~~~~~~d~~~l~~~i~~~~-~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~ 230 (407)
++.. +++...+|++.+++++.+.+ ..+.+++.+...+.+|. .+++++|+++|++||+++++|+||......
T Consensus 171 v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~---~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~---- 243 (450)
T 3bc8_A 171 IENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRV---PDRLEELAVICANYDIPHVVNNAYGLQSSK---- 243 (450)
T ss_dssp ECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBC---CCCHHHHHHHHHHHTCCEEEECTTTTTCHH----
T ss_pred EEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCce---ecCHHHHHHHHHHCCCeEEEECCCchhhhh----
Confidence 8542 23357899999999997644 23444443333444445 457999999999999999999999754421
Q ss_pred hhHHHH-HHHHcCCcEEEEEecCccccccCCCcceeEEeecChhhHHHH
Q 015435 231 DAQSVR-MFVADGGECLVAQSYAKNMGLYGERVGALSIVCKTEDVASRV 278 (407)
Q Consensus 231 ~~~~~~-~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~v~~~~~~~~~~ 278 (407)
...+. .......-..++.|..|.+..+ ...+.+ ...|++..+++
T Consensus 244 -~~~l~~~a~~~~~AD~~v~S~HK~l~a~-~~~~~l--~~rd~~~~~~~ 288 (450)
T 3bc8_A 244 -CMHLIQQGARVGRIDAFVQSLDKNFMVP-VGGAII--AGFNEPFIQDI 288 (450)
T ss_dssp -HHHHHHHHHHHSCCCEEEEEHHHHHSCC-SSCEEE--EESCHHHHHHH
T ss_pred -hHhHHHHHhcccCCCEEEECCccCCCch-hccEEE--EecCHHHHHHH
Confidence 11111 1111123456778999987643 334455 55676654443
No 237
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*
Probab=84.36 E-value=5.8 Score=38.06 Aligned_cols=70 Identities=10% Similarity=0.022 Sum_probs=47.9
Q ss_pred HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeee
Q 015435 140 PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 216 (407)
Q Consensus 140 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 216 (407)
.+.+...++|+..+.+.|+.++.+..+..-++-.....+ ....+.|..|+++|+++|++.|+++|+-||-
T Consensus 205 id~mA~~KlN~lH~HltDdqgwriei~~~P~Lt~~Ga~~-------~~~~~~~g~YT~~di~eIv~YA~~rgI~VIP 274 (525)
T 3gh5_A 205 IDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEIGSKG-------QVGGGPGGYYTQEQFKDIVSYAAERYIEVIP 274 (525)
T ss_dssp HHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSC-------CTTSSCCCCBCHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHcCCcEEEEEeccCCccccccccchhhhhccCcc-------ccCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 344556788999999887777777666555443311111 0112346679999999999999999988774
No 238
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=82.27 E-value=6.5 Score=37.67 Aligned_cols=69 Identities=10% Similarity=-0.063 Sum_probs=46.7
Q ss_pred HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeee
Q 015435 141 KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 216 (407)
Q Consensus 141 ~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 216 (407)
+.+...++|+..+.+.|+.++.+.....-++......+ ....+.|..++++++++|++.|+++|+-||-
T Consensus 181 d~ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~ga~~-------~~~~~~~g~YT~~di~eiv~yA~~rgI~VIP 249 (512)
T 1jak_A 181 DRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGST-------EVGGGPGGYYTKAEYKEIVRYAASRHLEVVP 249 (512)
T ss_dssp HHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSC-------CTTSSCCCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHcCCcEEEEEeccCCCceehhhhhHHHHhhcCcc-------ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 34446788888888877777777665554443311111 1122336789999999999999999998884
No 239
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Probab=81.47 E-value=3.6 Score=39.41 Aligned_cols=64 Identities=9% Similarity=0.013 Sum_probs=43.5
Q ss_pred HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeee
Q 015435 141 KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 216 (407)
Q Consensus 141 ~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 216 (407)
+.+...++|+..+.+.|+.++.+.....-++...... .| |..++++|+++|++.|+++|+-||-
T Consensus 175 d~ma~~KlN~lh~HltDdq~wr~e~~~~P~Lt~~Ga~-----------~~-~~~YT~~di~eiv~yA~~rgI~VIP 238 (507)
T 1now_A 175 DAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSY-----------SL-SHVYTPNDVRMVIEYARLRGIRVLP 238 (507)
T ss_dssp HHHHHTTCCEEEEECCCSSCCCBCCSSCHHHHHHHSS-----------ST-TSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhCCcEEEEeeccCccceeeccchhhhhcccCc-----------CC-CCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3444678888888887766666655444333221011 12 6679999999999999999988884
No 240
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Probab=79.71 E-value=4.3 Score=38.92 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=43.7
Q ss_pred HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeee
Q 015435 141 KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 216 (407)
Q Consensus 141 ~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 216 (407)
+.+...++++..+.+.|+.++.+.....-+...... ..|.|..++++|+++|++.|+++|+-||-
T Consensus 169 d~mA~~KlN~lh~HltDdq~wr~ei~~~P~Lt~~Ga-----------~~~~~~~YT~~di~eiv~yA~~rgI~VIP 233 (507)
T 2gjx_A 169 DVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGS-----------YNPVTHIYTAQDVKEVIEYARLRGIRVLA 233 (507)
T ss_dssp HHHHHTTCCEEEEECCCSSCCCBCCSSCTHHHHHHS-----------SCTTTSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhCCceEEEEEecccCeeeeccccchhhhccc-----------cCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 344467888888888776666665443333211001 12446679999999999999999988884
No 241
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=76.75 E-value=7.7 Score=33.76 Aligned_cols=102 Identities=11% Similarity=-0.029 Sum_probs=59.7
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC---
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--- 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--- 175 (407)
..+++ ..|++.+|-.+. .......|-+|++.+-.-.......+..|.+...+..+ - -|.+++++.+++.
T Consensus 29 gKval--VTGas~GIG~ai-A~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~D-v----~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 29 AKIAV--ITGATSGIGLAA-AKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQAD-S----ANLAELDRLYEKVKAE 100 (273)
T ss_dssp TCEEE--EESCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECC-T----TCHHHHHHHHHHHHHH
T ss_pred CCEEE--EeCcCCHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEec-C----CCHHHHHHHHHHHHHH
Confidence 45777 778888888774 23345688888877543333344555667777777662 2 3556665554321
Q ss_pred CCCcEEEEecCCCCCCCCC--CCHHHHHHHHHHHH
Q 015435 176 PSGAIVLLHACAHNPTGVD--PTLEQWEQIRQLMR 208 (407)
Q Consensus 176 ~~~~~v~i~~~p~NPtG~~--~~~~~l~~i~~~~~ 208 (407)
-.+.-++|.+-..++.+-. ++.++|+++.++--
T Consensus 101 ~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl 135 (273)
T 4fgs_A 101 AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNV 135 (273)
T ss_dssp HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHT
T ss_pred cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHh
Confidence 1234455634334443333 67888888876643
No 242
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=74.94 E-value=23 Score=26.27 Aligned_cols=105 Identities=10% Similarity=0.003 Sum_probs=61.6
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhc---CCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHY---HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP 176 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~---~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 176 (407)
+++. ...+.+.+.++.-.+..+. .+..|+...|.+..+...+..+|+....+=.-......-.+..+++++. .
T Consensus 6 Ell~--~~~g~~e~~lLlp~L~~l~~~~~~r~ilwi~pp~~~~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLr--s 81 (119)
T 1ofu_X 6 ELSL--SGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALR--L 81 (119)
T ss_dssp EEEE--ESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHH--H
T ss_pred EEee--cCCCccHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHh--c
Confidence 4444 4444444544444455554 4566777777788899999999986555443222211123455666666 2
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCcee
Q 015435 177 SGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLP 214 (407)
Q Consensus 177 ~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l 214 (407)
....+++ .... -++..+.+++--.|++.+.+.
T Consensus 82 g~~~aVl-~wl~-----~l~~~~~RRLqlAA~~g~~~~ 113 (119)
T 1ofu_X 82 GRSHTVV-SWLE-----PLSRAARKQLSRAAQLGQAQS 113 (119)
T ss_dssp TCEEEEE-ECCS-----SCCHHHHHHHHHHHHHHTCEE
T ss_pred CCccEEE-ECCC-----cCChHHHHHHHHHHHhCCCeE
Confidence 3444444 2222 266889999988888876543
No 243
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Probab=68.29 E-value=6.1 Score=38.14 Aligned_cols=77 Identities=12% Similarity=0.083 Sum_probs=49.3
Q ss_pred HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC---CCcEEEEec--CCCCCCCCCCCHHHHHHHHHHHHHcCcee
Q 015435 140 PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP---SGAIVLLHA--CAHNPTGVDPTLEQWEQIRQLMRSKGLLP 214 (407)
Q Consensus 140 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~---~~~~v~i~~--~p~NPtG~~~~~~~l~~i~~~~~~~~~~l 214 (407)
.+.+...++|+..+.+.|+.++.+.....-++-.... .+..--..+ .-..|.|..|+++|+++|++.|+++|+-|
T Consensus 161 ID~MA~~KlN~lH~HltDdqgwriei~~yP~Lt~~Ga~r~~t~~g~~~~~~~~~~~~~g~YT~~di~eIv~YA~~rgI~V 240 (543)
T 3rcn_A 161 IEVMAMHKLNVLHLHLTDDQGWRMQINRYPKLTETGAWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITV 240 (543)
T ss_dssp HHHHHHTTCCEEEEECEETTEECBCCSSCTHHHHTTTEESCCBSSCGGGCCBCCCCEECCBCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHcCCcEEEeecccccCcchhcccchhhhhhccccccccccccccccccCCccCCCcCHHHHHHHHHHHHHcCCEE
Confidence 3445577899999999887777776665554432110 010000000 11234577899999999999999999888
Q ss_pred ee
Q 015435 215 FF 216 (407)
Q Consensus 215 i~ 216 (407)
|=
T Consensus 241 IP 242 (543)
T 3rcn_A 241 IP 242 (543)
T ss_dssp EE
T ss_pred ee
Confidence 74
No 244
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=67.55 E-value=31 Score=29.53 Aligned_cols=101 Identities=7% Similarity=0.008 Sum_probs=56.9
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH---HHhhcCceeeEEEeecCCCCCcChhhHHHHHHc-
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK---VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRA- 174 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~- 174 (407)
..+++ ..|++.++-.+. .......|-+|++.+-.-..... .+...|.++..+..+ --|.+++++.+++
T Consensus 9 gKval--VTGas~GIG~ai-a~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~D-----v~~~~~v~~~~~~~ 80 (255)
T 4g81_D 9 GKTAL--VTGSARGLGFAY-AEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFD-----VTDELAIEAAFSKL 80 (255)
T ss_dssp TCEEE--ETTCSSHHHHHH-HHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCC-----TTCHHHHHHHHHHH
T ss_pred CCEEE--EeCCCcHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEee-----CCCHHHHHHHHHHH
Confidence 56777 778888888774 23345688899887643222222 233557777777651 2355555554432
Q ss_pred --CCCCcEEEEecCCCCCCCCC--CCHHHHHHHHHHH
Q 015435 175 --APSGAIVLLHACAHNPTGVD--PTLEQWEQIRQLM 207 (407)
Q Consensus 175 --~~~~~~v~i~~~p~NPtG~~--~~~~~l~~i~~~~ 207 (407)
.-.+.-++|.+-..++.+-. ++.++|+++.++-
T Consensus 81 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vN 117 (255)
T 4g81_D 81 DAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTN 117 (255)
T ss_dssp HHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHH
T ss_pred HHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHH
Confidence 22233455633333333333 6778888876654
No 245
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=63.80 E-value=12 Score=38.07 Aligned_cols=75 Identities=11% Similarity=0.050 Sum_probs=47.7
Q ss_pred HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCC-------CCcEEEEecC-CCC--CCCCCCCHHHHHHHHHHHHH
Q 015435 140 PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAP-------SGAIVLLHAC-AHN--PTGVDPTLEQWEQIRQLMRS 209 (407)
Q Consensus 140 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~-------~~~~v~i~~~-p~N--PtG~~~~~~~l~~i~~~~~~ 209 (407)
.+.+..+++++..+.+.|+.++.+.....-++-.... ....+ . +. .++ |.|..++++|+++|++.|++
T Consensus 334 Id~mA~~KlN~lh~HltDdqgwriei~~yP~Lt~~Ga~r~~~~~~~~~~-~-p~~g~~~~~~~g~YT~~direIv~YA~~ 411 (858)
T 1c7s_A 334 LDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCL-L-PQYGQGPDVYGGFFSRQDYIDIIKYAQA 411 (858)
T ss_dssp HHHHHHTTCCEEEEECEETTEECBCCTTCTHHHHTTTEECSCTTCSSSB-C-CCTTCCSSCEECCBCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCcEEEEEeccCccccccccCCchhhhccccccccccccccc-c-ccccCCCCccCCCCCHHHHHHHHHHHHH
Confidence 3445577889999998877777776665544432100 00000 0 10 011 34668999999999999999
Q ss_pred cCceeee
Q 015435 210 KGLLPFF 216 (407)
Q Consensus 210 ~~~~li~ 216 (407)
+|+-||=
T Consensus 412 rgI~VIP 418 (858)
T 1c7s_A 412 RQIEVIP 418 (858)
T ss_dssp TTCEEEE
T ss_pred cCCEEEE
Confidence 9988874
No 246
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=57.93 E-value=42 Score=27.73 Aligned_cols=95 Identities=12% Similarity=0.019 Sum_probs=50.8
Q ss_pred cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEec
Q 015435 106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHA 185 (407)
Q Consensus 106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~ 185 (407)
..|++.++...+ ...+...|-+|++.+-.-..........+.++..+.. | --|.+++++.+.+.....-+++++
T Consensus 6 VTGas~gIG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-D----~~~~~~v~~~~~~~~~~~d~lv~~ 79 (230)
T 3guy_A 6 ITGASSGLGAEL-AKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRAR-D----LASHQEVEQLFEQLDSIPSTVVHS 79 (230)
T ss_dssp EESTTSHHHHHH-HHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEEC-C----TTCHHHHHHHHHSCSSCCSEEEEC
T ss_pred EecCCchHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEee-c----CCCHHHHHHHHHHHhhcCCEEEEe
Confidence 556677776663 2233557888877654333333344444556666655 1 247788888887543232345533
Q ss_pred CCCCCCCC--CCCHHHHHHHHHH
Q 015435 186 CAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 186 ~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
-...+.+. -.+.+++++..+.
T Consensus 80 Ag~~~~~~~~~~~~~~~~~~~~~ 102 (230)
T 3guy_A 80 AGSGYFGLLQEQDPEQIQTLIEN 102 (230)
T ss_dssp CCCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCcCCCCccccCCHHHHHHHHHH
Confidence 33322232 2456666666544
No 247
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase, hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A* 3vtr_A*
Probab=57.27 E-value=16 Score=35.37 Aligned_cols=64 Identities=6% Similarity=-0.049 Sum_probs=43.8
Q ss_pred HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeee
Q 015435 141 KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 216 (407)
Q Consensus 141 ~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 216 (407)
+.+...++|+..+.+.|+.++.+.....-++-.... ...|..++++|+++|++.|+++|+-||-
T Consensus 211 d~mA~~KlN~lH~HltDdqgwrlei~~~P~Lt~~Ga------------~~~~~~YT~~di~eiv~yA~~rgI~VIP 274 (572)
T 3ozo_A 211 EAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKFGA------------LSPQKVYTKAAIREVVRFGLERGVRVLP 274 (572)
T ss_dssp HHHHHTTCCEEEEECCCSSCCCBCCSSSHHHHHHHS------------SSSSSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHcCCceEEEEeecCcCceeccccCcchhccCC------------cCCCCCcCHHHHHHHHHHHHHhCCceee
Confidence 344467888888888777667666554443322000 1135678999999999999999988773
No 248
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=52.87 E-value=81 Score=24.72 Aligned_cols=106 Identities=10% Similarity=0.006 Sum_probs=62.3
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhc---CCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHY---HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~---~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 175 (407)
.+++. ...+.+.+.++.-++..+. .+..|+...|-+..+...+..+|++...+=.-...+..--+..+++++.
T Consensus 47 ~Ell~--~~~g~gel~LL~P~La~l~~~~~~r~vlwI~Pp~~l~~~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALr-- 122 (161)
T 1oft_A 47 SELSL--SGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALR-- 122 (161)
T ss_dssp EEEEE--ESCHHHHHHHHHHHHHHHHTCSSSSEEEEESCCTTSCHHHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHH--
T ss_pred EEEcc--CCCcHHHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCCHHHEEEEECCChHHHHHHHHHHHh--
Confidence 35555 4444443434333444443 4566777777788899999999986555443222222223466677777
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCcee
Q 015435 176 PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLP 214 (407)
Q Consensus 176 ~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l 214 (407)
.....+++ .... -++..+++++--.|++.+.+.
T Consensus 123 sG~~~aVl-~Wl~-----~l~~~~~RRLqlAAe~g~~~~ 155 (161)
T 1oft_A 123 LGRSHTVV-SWLE-----PLSRAARKQLSRAAQLGQAQS 155 (161)
T ss_dssp TTCEEEEE-ECCS-----SCCHHHHHHHHHHHHHTTCEE
T ss_pred cCCccEEE-ECCC-----cCChHHHHHHHHHHHhCCCeE
Confidence 33444444 2222 266889999988888776543
No 249
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=52.29 E-value=8.8 Score=36.29 Aligned_cols=29 Identities=7% Similarity=0.221 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHcCceeeecccccccc
Q 015435 196 TLEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 196 ~~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
+.++++++++-|+++|+.||+|-++....
T Consensus 75 t~~df~~lv~~aH~~Gi~VilD~V~NH~~ 103 (496)
T 4gqr_A 75 NEDEFRNMVTRCNNVGVRIYVDAVINHMC 103 (496)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccCcCC
Confidence 39999999999999999999999987654
No 250
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=52.20 E-value=59 Score=31.39 Aligned_cols=104 Identities=13% Similarity=-0.007 Sum_probs=57.2
Q ss_pred CceEEeecCCcccHHHHHHHHHHh------hcCCCeEEecCCCCCChHH-------HHhhcCceeeEEEee-cCCCCCcC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLAR------HYHQLTIYIPQPTWGNHPK-------VFTLAGLSVKTYRYY-DPATRGLN 164 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~------~~~gd~Vi~~~p~y~~~~~-------~~~~~G~~~~~v~~~-~~~~~~~d 164 (407)
++++++.|.|.-+.+..+.++... +.+||+|+++....++... .+...|++++.-... ..-..=-+
T Consensus 291 ~~~vii~tgsqGe~~~~L~r~a~~~~~~~~~~~~d~vi~s~~~ipGne~~~~~~~~~l~~~g~~v~~~~~~~~h~SgHa~ 370 (555)
T 3zq4_A 291 NKVTILCTGSQGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGPLNDIHTSGHGG 370 (555)
T ss_dssp GGEEEEECCTTCCTTSHHHHHHSSCCSSCCCCTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECSSSSCCCCCSSCC
T ss_pred CCEEEEeCCCCchHHHHHHHHhcCCCCccccCCCCEEEEECCCCCCcHHHHHHHHHHHHHCCCEEEecCCcceEEeCCCC
Confidence 455554344434444444433322 2368999999876666542 234678887651000 01123347
Q ss_pred hhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 015435 165 FQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGL 212 (407)
Q Consensus 165 ~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~ 212 (407)
-+++...++.-..+.++.++ |- ...+.+.++++++.|+
T Consensus 371 ~~eL~~~~~~~~Pk~~ipvH-------Ge---~~~~~~~~~~a~~~G~ 408 (555)
T 3zq4_A 371 QEEQKLMLRLIKPKFFMPIH-------GE---YRMQKMHVKLATDCGI 408 (555)
T ss_dssp HHHHHHHHHHSCEEEEEEES-------BC---HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCEEEEcC-------CC---HHHHHHHHHHHHHcCC
Confidence 78888887643222333332 22 5678888888888664
No 251
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=52.18 E-value=71 Score=28.43 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=48.2
Q ss_pred HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccc
Q 015435 140 PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSA 219 (407)
Q Consensus 140 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~ 219 (407)
....+..|.+. + +.++..-+.-++.+... -+...+-+ -.||.|...+.+...++++.|+++|+.+++|-.
T Consensus 12 ~~~~e~~g~~~--~---~~~G~~~~~~~ilk~~G--~n~vRlri---~v~P~~g~~d~~~~~~~~~~ak~~Gl~v~ld~h 81 (334)
T 1fob_A 12 LLLLEDEGYSY--K---NLNGQTQALETILADAG--INSIRQRV---WVNPSDGSYDLDYNLELAKRVKAAGMSLYLDLH 81 (334)
T ss_dssp HHHHHHTTCCC--B---CTTSCBCCHHHHHHHHT--CCEEEEEE---CSCCTTCTTCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHcCCEE--E---CCCCCCchHHHHHHHcC--CCEEEEEE---EECCCCCccCHHHHHHHHHHHHHCCCEEEEEec
Confidence 34556777664 2 23333334444444333 23333333 257888888899999999999999999999977
Q ss_pred ccccc
Q 015435 220 YQGFA 224 (407)
Q Consensus 220 y~~~~ 224 (407)
|++..
T Consensus 82 ysd~w 86 (334)
T 1fob_A 82 LSDTW 86 (334)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 76554
No 252
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=51.62 E-value=8.7 Score=38.62 Aligned_cols=28 Identities=14% Similarity=0.401 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCceeeecccccccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
.++++++++.|+++|+-||.|-+|....
T Consensus 254 ~~efk~lV~~~H~~Gi~VilDvV~NH~~ 281 (714)
T 2ya0_A 254 IAEFKNLINEIHKRGMGAILDVVYNHTA 281 (714)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTBCS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccCccc
Confidence 7999999999999999999999986554
No 253
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=51.56 E-value=11 Score=35.31 Aligned_cols=68 Identities=12% Similarity=0.056 Sum_probs=43.2
Q ss_pred HHHhhcCceeeEEEeecCCCCCcChhhHH--------------HHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHH
Q 015435 141 KVFTLAGLSVKTYRYYDPATRGLNFQGLL--------------EDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQL 206 (407)
Q Consensus 141 ~~~~~~G~~~~~v~~~~~~~~~~d~~~l~--------------~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~ 206 (407)
+.+...++++..+.+.|+ ++.+.++..- +.+. +... ...++|.|..++++|+++|++.
T Consensus 32 D~mA~~KlN~lH~HltDd-gwriei~~~pl~~~g~~~~~~~~~~~~~--~g~~-----~~~~~~~~~~YT~~di~eIv~Y 103 (442)
T 2yl5_A 32 DKASELGYSDVHLLLGND-GLRFLLDDMTITANGKTYASDDVKKAII--EGTK-----AYYDDPNGTALTQAEVTELIEY 103 (442)
T ss_dssp HHHHHHTCCEEEEEEESS-SBCBCCSCCCEEETTEEECHHHHHHHHH--HHHH-----HHCCCTTCSCBCHHHHHHHHHH
T ss_pred HHHHHhCCcEEEEEEcCC-CcceeccCCcceeceeeccccccccccc--CCcc-----ccccCCCCCCcCHHHHHHHHHH
Confidence 344467888888888654 5655443211 1111 0000 0123566788999999999999
Q ss_pred HHHcCceeee
Q 015435 207 MRSKGLLPFF 216 (407)
Q Consensus 207 ~~~~~~~li~ 216 (407)
|+++|+-||=
T Consensus 104 A~~rgI~VIP 113 (442)
T 2yl5_A 104 AKSKDIGLIP 113 (442)
T ss_dssp HHTTTCEEEE
T ss_pred HHHcCCeeee
Confidence 9999988884
No 254
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=51.43 E-value=97 Score=25.95 Aligned_cols=99 Identities=10% Similarity=0.031 Sum_probs=50.9
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH---HhhcCceeeEEEeecCCCCCcChhhHHHHHH--
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV---FTLAGLSVKTYRYYDPATRGLNFQGLLEDLR-- 173 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~---~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~-- 173 (407)
..+++ ..|++.++...+ ...+...|-+|++.+-.-...... ++..|.++..+..+ - -|.+++++.+.
T Consensus 7 ~k~vl--VTGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-v----~~~~~v~~~~~~~ 78 (252)
T 3h7a_A 7 NATVA--VIGAGDYIGAEI-AKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLD-A----RNEDEVTAFLNAA 78 (252)
T ss_dssp SCEEE--EECCSSHHHHHH-HHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECC-T----TCHHHHHHHHHHH
T ss_pred CCEEE--EECCCchHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECc-C----CCHHHHHHHHHHH
Confidence 34555 667777777663 223355788887765433322222 23447777777662 2 35555555443
Q ss_pred -cCCCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 174 -AAPSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 174 -~~~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
+. ...-+++++-...+.+. -.+.+++++..+.
T Consensus 79 ~~~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 113 (252)
T 3h7a_A 79 DAH-APLEVTIFNVGANVNFPILETTDRVFRKVWEM 113 (252)
T ss_dssp HHH-SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred Hhh-CCceEEEECCCcCCCCCcccCCHHHHHHHHHH
Confidence 22 33445553333222222 2556666665443
No 255
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=51.32 E-value=37 Score=29.60 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHcCceeeeccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSA 219 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~ 219 (407)
.+.++++++.|.++|+.+|+|-.
T Consensus 64 ~~~ld~~v~~a~~~Gi~Vild~h 86 (302)
T 1bqc_A 64 PSDVANVISLCKQNRLICMLEVH 86 (302)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEG
T ss_pred HHHHHHHHHHHHHCCCEEEEEec
Confidence 57788888888888888888853
No 256
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=51.14 E-value=5.6 Score=40.03 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++++++++.||++|+-||.|-+|.....
T Consensus 315 ~~dfk~LV~~aH~~GI~VIlDvV~NHt~~ 343 (718)
T 2e8y_A 315 KTELKQMINTLHQHGLRVILDVVFNHVYK 343 (718)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCCSS
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccC
Confidence 69999999999999999999999876664
No 257
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=49.62 E-value=58 Score=27.39 Aligned_cols=67 Identities=13% Similarity=-0.041 Sum_probs=31.9
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHH
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLR 173 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~ 173 (407)
..+++ ..|++.++-..+ .......|-+|++.+-.-..........+.++..+.. |- -|.+++++.+.
T Consensus 7 ~k~~l--VTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-Dv----~~~~~v~~~~~ 73 (257)
T 3tpc_A 7 SRVFI--VTGASSGLGAAV-TRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNA-DV----TNEADATAALA 73 (257)
T ss_dssp TCEEE--EESTTSHHHHHH-HHHHHHTTCEEEEEESSCC------------CEEEEC-CT----TCHHHHHHHHH
T ss_pred CCEEE--EeCCCCHHHHHH-HHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEc-cC----CCHHHHHHHHH
Confidence 34556 667777777663 2333557888877654444444444445556666655 11 35566665554
No 258
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=49.27 E-value=37 Score=28.54 Aligned_cols=100 Identities=9% Similarity=0.068 Sum_probs=51.5
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC---
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--- 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--- 175 (407)
...++ ..|++.++-..+ .......|-+|++.+-.-..........|.++..+..+ --|.+++++.+.+.
T Consensus 6 gk~vl--VTGas~gIG~a~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~ 77 (247)
T 3rwb_A 6 GKTAL--VTGAAQGIGKAI-AARLAADGATVIVSDINAEGAKAAAASIGKKARAIAAD-----ISDPGSVKALFAEIQAL 77 (247)
T ss_dssp TCEEE--EETTTSHHHHHH-HHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCC-----TTCHHHHHHHHHHHHHH
T ss_pred CCEEE--EECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcC-----CCCHHHHHHHHHHHHHH
Confidence 34555 667777777663 22335578888887644333333444456666666551 23556666555421
Q ss_pred CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 176 PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 176 ~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
-...-++|++-...+.+. -.+.+++++..+.
T Consensus 78 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 110 (247)
T 3rwb_A 78 TGGIDILVNNASIVPFVAWDDVDLDHWRKIIDV 110 (247)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 112334553333333332 2466777666544
No 259
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=48.80 E-value=12 Score=35.14 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
.++++++++.|+++|+.||.|-++......
T Consensus 64 ~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~ 93 (448)
T 1g94_A 64 RAQFIDMVNRCSAAGVDIYVDTLINHMAAG 93 (448)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSEECSS
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeeccccCC
Confidence 999999999999999999999998765543
No 260
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=48.49 E-value=18 Score=35.32 Aligned_cols=32 Identities=9% Similarity=0.231 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 194 DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 194 ~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.-+.++++++++.|+++|+-||.|-++.....
T Consensus 215 ~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 246 (583)
T 1ea9_C 215 FGDKDTLKKLVDLCHERGIRVLLDAVFNHSGR 246 (583)
T ss_dssp TCCHHHHHHHHHHHTTTTCEEEEECCCSBCCT
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEccccCCC
Confidence 34589999999999999999999999877764
No 261
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=48.06 E-value=53 Score=28.31 Aligned_cols=76 Identities=13% Similarity=0.024 Sum_probs=44.8
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSG 178 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 178 (407)
...++ ..|++.++-..+ ...+...|-+|++..-.-.......+..+.++..+.. | --|.+.+++.+.+. ..
T Consensus 16 gk~vl--VTGas~gIG~~~-a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-D----l~d~~~v~~~~~~~-~~ 86 (291)
T 3rd5_A 16 QRTVV--ITGANSGLGAVT-ARELARRGATVIMAVRDTRKGEAAARTMAGQVEVREL-D----LQDLSSVRRFADGV-SG 86 (291)
T ss_dssp TCEEE--EECCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEEC-C----TTCHHHHHHHHHTC-CC
T ss_pred CCEEE--EeCCCChHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEc-C----CCCHHHHHHHHHhc-CC
Confidence 34556 667777777763 2333557888887654322333344455667777766 1 24788888888744 23
Q ss_pred cEEEE
Q 015435 179 AIVLL 183 (407)
Q Consensus 179 ~~v~i 183 (407)
.-+++
T Consensus 87 iD~lv 91 (291)
T 3rd5_A 87 ADVLI 91 (291)
T ss_dssp EEEEE
T ss_pred CCEEE
Confidence 44555
No 262
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=47.76 E-value=16 Score=34.21 Aligned_cols=30 Identities=7% Similarity=0.112 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
.++++++++.|+++|+.||.|-++......
T Consensus 69 ~~df~~lv~~aH~~Gi~VilD~V~NH~~~~ 98 (441)
T 1lwj_A 69 EREFKEMIEAFHDSGIKVVLDLPIHHTGFL 98 (441)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTBCCTT
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCcccCc
Confidence 999999999999999999999998766643
No 263
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET: ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A* 2yl8_A* 3rpm_A*
Probab=47.11 E-value=12 Score=35.05 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=24.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCceeee
Q 015435 189 NPTGVDPTLEQWEQIRQLMRSKGLLPFF 216 (407)
Q Consensus 189 NPtG~~~~~~~l~~i~~~~~~~~~~li~ 216 (407)
+|.|..++++|+++|++.|+++|+-||=
T Consensus 83 ~~~~~~YT~~di~eIv~YA~~rgI~VIP 110 (434)
T 2yl6_A 83 DPNGNHLTESQMTDLINYAKDKGIGLIP 110 (434)
T ss_dssp CTTCSCEEHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 4567789999999999999999988884
No 264
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=46.75 E-value=22 Score=32.82 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++++++++.|+++|+.||.|-++.....
T Consensus 68 ~~d~~~lv~~~h~~Gi~VilD~V~NH~~~ 96 (405)
T 1ht6_A 68 AAELKSLIGALHGKGVQAIADIVINHRCA 96 (405)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCcccC
Confidence 89999999999999999999999876554
No 265
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=46.68 E-value=70 Score=27.12 Aligned_cols=100 Identities=6% Similarity=0.002 Sum_probs=57.7
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCC-CChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTW-GNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPS 177 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y-~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 177 (407)
..+++ ..|++.+|-.+. .......|-+|++.+-.- ......++..|.+...+..+ - -|.+.+++.+. ..
T Consensus 9 GKval--VTGas~GIG~ai-A~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~D-v----~d~~~v~~~~~--~g 78 (247)
T 4hp8_A 9 GRKAL--VTGANTGLGQAI-AVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLID-F----ADPLAAKDSFT--DA 78 (247)
T ss_dssp TCEEE--ETTTTSHHHHHH-HHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECC-T----TSTTTTTTSST--TT
T ss_pred CCEEE--EeCcCCHHHHHH-HHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEcc-C----CCHHHHHHHHH--hC
Confidence 56777 778888888874 233456888887765321 12344556778888887762 2 24444444444 22
Q ss_pred CcEEEEecCCCCCCCCC--CCHHHHHHHHHHHH
Q 015435 178 GAIVLLHACAHNPTGVD--PTLEQWEQIRQLMR 208 (407)
Q Consensus 178 ~~~v~i~~~p~NPtG~~--~~~~~l~~i~~~~~ 208 (407)
+--++|.+-..++.+.. ++.++|+++.++--
T Consensus 79 ~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl 111 (247)
T 4hp8_A 79 GFDILVNNAGIIRRADSVEFSELDWDEVMDVNL 111 (247)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCCCCcccccHHHHHHHHHHHh
Confidence 33356633333333332 67888888876643
No 266
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=46.10 E-value=49 Score=28.42 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=51.8
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC---
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--- 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--- 175 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+-.-..........|.++..+..+ - -|.+++++.+.+.
T Consensus 27 ~k~vl--VTGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-v----~d~~~v~~~~~~~~~~ 98 (277)
T 4dqx_A 27 QRVCI--VTGGGSGIGRAT-AELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVD-V----SSAKDAESMVEKTTAK 98 (277)
T ss_dssp TCEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECC-T----TCHHHHHHHHHHHHHH
T ss_pred CCEEE--EECCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEec-C----CCHHHHHHHHHHHHHH
Confidence 44666 667777777763 22335578888876543222333344456666666651 2 3566666555421
Q ss_pred CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 176 PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 176 ~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
-...-++|++-...+.+. -.+.++++++.+.
T Consensus 99 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 131 (277)
T 4dqx_A 99 WGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSV 131 (277)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHH
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHH
Confidence 112334553333222222 2566777766543
No 267
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=45.35 E-value=16 Score=35.57 Aligned_cols=32 Identities=9% Similarity=0.256 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 195 PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 195 ~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
-+.++++++++.|+++|+-||.|-++.....+
T Consensus 217 Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~~~~ 248 (585)
T 1wzl_A 217 GDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQ 248 (585)
T ss_dssp CCHHHHHHHHHHHHTTTCEEEEEECCSBCCTT
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEcCCcCCCc
Confidence 34899999999999999999999998777653
No 268
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=45.21 E-value=18 Score=33.69 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++++++++.|+++|+-||.|-++.....
T Consensus 86 ~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 114 (435)
T 1mxg_A 86 KEELVRLIQTAHAYGIKVIADVVINHRAG 114 (435)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcccccC
Confidence 99999999999999999999999866553
No 269
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=44.89 E-value=54 Score=27.68 Aligned_cols=99 Identities=8% Similarity=0.003 Sum_probs=50.1
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHc---CC
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRA---AP 176 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~---~~ 176 (407)
..++ ..|++.++-..+ ...+...|-+|++.+-.-.......+..|.++..+..+ - -|.+++++.+.+ .-
T Consensus 9 k~~l--VTGas~gIG~a~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-v----~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 9 KKAI--VIGGTHGMGLAT-VRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSD-I----ADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp CEEE--EETCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECC-T----TCHHHHHHHHHHHHHHH
T ss_pred CEEE--EECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEcc-C----CCHHHHHHHHHHHHHHh
Confidence 4555 667777777663 22335578888876543222333344456667666652 2 355555554432 11
Q ss_pred CCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 177 SGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 177 ~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
...-+++++-...+.+. -.+.+++++..+.
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 112 (255)
T 4eso_A 81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAV 112 (255)
T ss_dssp SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 23445553322222221 1356777666543
No 270
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=44.52 E-value=19 Score=35.13 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 196 TLEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 196 ~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
+.++++++++.|+++|+-||.|-++.....+
T Consensus 221 t~~df~~lv~~~H~~Gi~VilD~V~NH~~~~ 251 (588)
T 1j0h_A 221 DKETLKTLIDRCHEKGIRVMLDAVFNHCGYE 251 (588)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCTT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcCcCccc
Confidence 4899999999999999999999998777643
No 271
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=43.94 E-value=20 Score=33.97 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++++++++.|+++|+.||.|-++.....
T Consensus 81 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~s~ 109 (488)
T 1wza_A 81 LEDFHKLVEAAHQRGIKVIIDLPINHTSE 109 (488)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCSBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccccC
Confidence 89999999999999999999999876654
No 272
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=43.76 E-value=19 Score=34.55 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
.++++++++.|+++|+.||.|-++.....+
T Consensus 92 ~~dfk~Lv~~aH~~GI~VilD~V~NHt~~~ 121 (527)
T 1gcy_A 92 DAQLRQAASALGGAGVKVLYDVVPNHMNRG 121 (527)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCTT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeecCcCCC
Confidence 999999999999999999999998766544
No 273
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=43.53 E-value=19 Score=33.44 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHcCceeeecccccccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
.++++++++.|+++|+.||.|-++....
T Consensus 81 ~~d~~~lv~~ah~~Gi~vilD~V~NH~s 108 (424)
T 2dh2_A 81 KEDFDSLLQSAKKKSIRVILDLTPNYRG 108 (424)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCTTTTS
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCcCC
Confidence 8999999999999999999999986555
No 274
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=43.20 E-value=20 Score=34.49 Aligned_cols=28 Identities=4% Similarity=0.081 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCceeeecccccccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
.++++++++.|+++|+.||.|-++....
T Consensus 79 ~~dfk~Lv~~aH~~Gi~VilD~V~NHts 106 (549)
T 4aie_A 79 MADMDELISKAKEHHIKIVMDLVVNHTS 106 (549)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEECccCCc
Confidence 8999999999999999999999987654
No 275
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=43.18 E-value=20 Score=33.82 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++++++++.|+++|+.||.|-++.....
T Consensus 96 ~~df~~lv~~~h~~Gi~VilD~V~NH~~~ 124 (475)
T 2z1k_A 96 NEALRHLLEVAHAHGVRVILDGVFNHTGR 124 (475)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccC
Confidence 89999999999999999999999876664
No 276
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=42.78 E-value=76 Score=26.97 Aligned_cols=100 Identities=13% Similarity=-0.002 Sum_probs=56.1
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH---HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP---KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 175 (407)
+.+++ ..|++.+|-.+. .......|-+|++.+-.-.... .-++..|.++..+..+ - -|.+++++.+++.
T Consensus 7 gKval--VTGas~GIG~ai-A~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~D-v----t~~~~v~~~~~~~ 78 (254)
T 4fn4_A 7 NKVVI--VTGAGSGIGRAI-AKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKAD-V----SKKKDVEEFVRRT 78 (254)
T ss_dssp TCEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECC-T----TSHHHHHHHHHHH
T ss_pred CCEEE--EeCCCCHHHHHH-HHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcc-C----CCHHHHHHHHHHH
Confidence 45666 777888887774 2233458888887653322222 2334568888877762 2 3666666655421
Q ss_pred ---CCCcEEEEecCCC-C-CCCC--CCCHHHHHHHHHHH
Q 015435 176 ---PSGAIVLLHACAH-N-PTGV--DPTLEQWEQIRQLM 207 (407)
Q Consensus 176 ---~~~~~v~i~~~p~-N-PtG~--~~~~~~l~~i~~~~ 207 (407)
-.+.-++| +|.. . +.+- -++.++|+++.++-
T Consensus 79 ~~~~G~iDiLV-NNAGi~~~~~~~~~~~~e~~~~~~~vN 116 (254)
T 4fn4_A 79 FETYSRIDVLC-NNAGIMDGVTPVAEVSDELWERVLAVN 116 (254)
T ss_dssp HHHHSCCCEEE-ECCCCCCTTCCGGGCCHHHHHHHHHHH
T ss_pred HHHcCCCCEEE-ECCcccCCCCChhhCCHHHHHHHHHHH
Confidence 12333455 4432 2 3332 26788888886654
No 277
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=42.75 E-value=19 Score=34.02 Aligned_cols=29 Identities=7% Similarity=0.237 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++++++++.|+++|+.||.|-++.....
T Consensus 97 ~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 125 (478)
T 2guy_A 97 ADDLKALSSALHERGMYLMVDVVANHMGY 125 (478)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCE
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcccCCC
Confidence 89999999999999999999999865543
No 278
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Probab=42.74 E-value=13 Score=39.00 Aligned_cols=28 Identities=14% Similarity=0.401 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCceeeecccccccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
.++++++++.|+++|+-||.|-+|....
T Consensus 561 ~~efk~lV~~~H~~GI~VIlDvV~NHt~ 588 (1014)
T 2ya1_A 561 IAEFKNLINEIHKRGMGAILDVVYNHTA 588 (1014)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTCCS
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccc
Confidence 6999999999999999999999986554
No 279
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=42.61 E-value=17 Score=34.82 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHcCceeeecccccccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
.++++++++.|+++|+.||+|-++....
T Consensus 81 ~~dfk~Lv~~aH~~Gi~VilD~V~NH~~ 108 (515)
T 1hvx_A 81 KAQYLQAIQAAHAAGMQVYADVVFDHKG 108 (515)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCCcc
Confidence 9999999999999999999999987664
No 280
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=42.38 E-value=17 Score=34.41 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHcCceeeecccccccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
.++++++++.|+++|+.||+|-++....
T Consensus 78 ~~df~~lv~~aH~~Gi~VilD~V~NH~~ 105 (483)
T 3bh4_A 78 KSELQDAIGSLHSRNVQVYGDVVLNHKA 105 (483)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccCccc
Confidence 9999999999999999999999986654
No 281
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=42.33 E-value=17 Score=34.37 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCceeeecccccccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
.++++++++.|+++|+.||.|-++....
T Consensus 80 ~~df~~lv~~aH~~Gi~VilD~V~NH~~ 107 (480)
T 1ud2_A 80 KAQLERAIGSLKSNDINVYGDVVMNHKM 107 (480)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccCccc
Confidence 9999999999999999999999986664
No 282
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=42.21 E-value=17 Score=34.30 Aligned_cols=30 Identities=7% Similarity=0.170 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
.++++++++.|+++|+.||+|-++......
T Consensus 74 ~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~ 103 (471)
T 1jae_A 74 ESAFTDMTRRCNDAGVRIYVDAVINHMTGM 103 (471)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCSS
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCC
Confidence 899999999999999999999998665543
No 283
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=42.20 E-value=29 Score=30.99 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=31.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCceeeecccccccc
Q 015435 188 HNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 188 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
.+|.|-..+.+.+.++++.|+++|+.+++|-.|++..
T Consensus 50 ~~P~~g~~~~~~~~~~~~~A~~~GlkV~ld~Hysd~W 86 (332)
T 1hjs_A 50 VNPADGNYNLDYNIAIAKRAKAAGLGVYIDFHYSDTW 86 (332)
T ss_dssp SSCTTCTTSHHHHHHHHHHHHHTTCEEEEEECCSSSC
T ss_pred eCCCCCcCCHHHHHHHHHHHHHCCCEEEEEeccCCCc
Confidence 6777888889999999999999999999997766554
No 284
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=42.06 E-value=73 Score=26.83 Aligned_cols=99 Identities=11% Similarity=0.028 Sum_probs=49.5
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHc---CC
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRA---AP 176 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~---~~ 176 (407)
..++ ..|++.++-..+ ...+...|-+|++.+-.-..........+.++..+..+ - -|.+++++.+.+ .-
T Consensus 9 k~vl--VTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-~----~~~~~v~~~~~~~~~~~ 80 (259)
T 4e6p_A 9 KSAL--ITGSARGIGRAF-AEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMD-V----TRQDSIDAAIAATVEHA 80 (259)
T ss_dssp CEEE--EETCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECC-T----TCHHHHHHHHHHHHHHS
T ss_pred CEEE--EECCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEee-C----CCHHHHHHHHHHHHHHc
Confidence 4555 667777777663 22335578888876543333333444445556666551 1 355666555432 11
Q ss_pred CCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 177 SGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 177 ~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
...-+++++-...+.+. -.+.+++++..+.
T Consensus 81 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 112 (259)
T 4e6p_A 81 GGLDILVNNAALFDLAPIVEITRESYEKLFAI 112 (259)
T ss_dssp SSCCEEEECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHH
Confidence 23334553333222222 2456677665443
No 285
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=41.98 E-value=60 Score=27.84 Aligned_cols=100 Identities=11% Similarity=0.066 Sum_probs=51.0
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC---
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--- 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--- 175 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+-.-..........|.++..+..+ - -|.+++++.+.+.
T Consensus 29 gk~vl--VTGas~gIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-v----~d~~~v~~~~~~~~~~ 100 (277)
T 3gvc_A 29 GKVAI--VTGAGAGIGLAV-ARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVD-V----SDEQQIIAMVDACVAA 100 (277)
T ss_dssp TCEEE--ETTTTSTHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECC-T----TCHHHHHHHHHHHHHH
T ss_pred CCEEE--EECCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEec-C----CCHHHHHHHHHHHHHH
Confidence 34566 667777776653 22335578888876543223333444446666666651 2 3556655554321
Q ss_pred CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 176 PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 176 ~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
-...-++|++-...+.+. -.+.+++++..+.
T Consensus 101 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~v 133 (277)
T 3gvc_A 101 FGGVDKLVANAGVVHLASLIDTTVEDFDRVIAI 133 (277)
T ss_dssp HSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 112334452332222222 2567777766554
No 286
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=41.61 E-value=51 Score=28.08 Aligned_cols=67 Identities=9% Similarity=-0.007 Sum_probs=38.5
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHH
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLR 173 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~ 173 (407)
...++ ..|++.++-..+ ...+...|-+|++..-.-.......+..|.++..+..+ - -|.+++++.+.
T Consensus 27 gk~vl--VTGas~gIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-v----~d~~~v~~~~~ 93 (266)
T 3grp_A 27 GRKAL--VTGATGGIGEAI-ARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSAN-L----SDRKSIKQLAE 93 (266)
T ss_dssp TCEEE--ESSTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECC-T----TSHHHHHHHHH
T ss_pred CCEEE--EeCCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEee-c----CCHHHHHHHHH
Confidence 34566 677777777663 22335578888776543333333444557677777652 2 35666665554
No 287
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=41.60 E-value=18 Score=34.30 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHcCceeeecccccccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
.++++++++.|+++|+.||+|-++....
T Consensus 82 ~~df~~Lv~~aH~~Gi~VilD~V~NH~~ 109 (485)
T 1wpc_A 82 RSQLQAAVTSLKNNGIQVYGDVVMNHKG 109 (485)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeccccC
Confidence 9999999999999999999999986554
No 288
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=41.46 E-value=1.1e+02 Score=26.07 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=37.9
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHH
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLR 173 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~ 173 (407)
...++ ..|++.++-..+ ...+...|-+|++.+-.-..........+.++..+..+ - -|.+.+++.+.
T Consensus 30 ~k~vl--VTGas~GIG~ai-a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~D-l----~~~~~v~~~~~ 96 (281)
T 3ppi_A 30 GASAI--VSGGAGGLGEAT-VRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTN-V----TSEDSVLAAIE 96 (281)
T ss_dssp TEEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECC-T----TCHHHHHHHHH
T ss_pred CCEEE--EECCCChHHHHH-HHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcC-C----CCHHHHHHHHH
Confidence 34556 667777777663 23335578888876543323333444556667666652 2 35566665554
No 289
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=40.67 E-value=17 Score=33.67 Aligned_cols=30 Identities=7% Similarity=0.120 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
.++++++++.|+++|+-||.|-++.....+
T Consensus 74 ~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~ 103 (422)
T 1ua7_A 74 EQEFKEMCAAAEEYGIKVIVDAVINHTTFD 103 (422)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCSBCCSC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccCcccCC
Confidence 999999999999999999999998766654
No 290
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=39.48 E-value=1.6e+02 Score=28.39 Aligned_cols=79 Identities=14% Similarity=0.023 Sum_probs=47.7
Q ss_pred cCCCeEEecCCCCCChH-------HHHhhcCceeeEEEee-cCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCC
Q 015435 124 YHQLTIYIPQPTWGNHP-------KVFTLAGLSVKTYRYY-DPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDP 195 (407)
Q Consensus 124 ~~gd~Vi~~~p~y~~~~-------~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~ 195 (407)
.++|.|+++....++.. ......|++++..... -.-..=.|.+++...+..-..+.++.++ |-
T Consensus 337 ~~~~~vi~s~~~~~G~~~~~~~~~~~l~~~g~~v~~~~~~~i~~SgHa~~~eL~~~i~~~~Pk~vipvH-------Ge-- 407 (562)
T 3bk2_A 337 KPGDTVILSSSPIPGNEEAVNRVINRLYALGAYVLYPPTYKVHASGHASQEELKLILNLTTPRFFLPWH-------GE-- 407 (562)
T ss_dssp CTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECTTTSSSCCCSSCCHHHHHHHHHHHCCSEEEEES-------BC--
T ss_pred CCCCEEEEECCCCCCCeEehhhhcCceeeCCCEEEEccCCceEEeCCCCHHHHHHHHHhcCCCEEEEEc-------CC--
Confidence 57899999987776653 2334668887643200 0111234778888877643334455553 22
Q ss_pred CHHHHHHHHHHHHHcCc
Q 015435 196 TLEQWEQIRQLMRSKGL 212 (407)
Q Consensus 196 ~~~~l~~i~~~~~~~~~ 212 (407)
...+.++++++++.|+
T Consensus 408 -~~~~~~~~~~~~~~g~ 423 (562)
T 3bk2_A 408 -VRHQMNFKWLAESMSR 423 (562)
T ss_dssp -HHHHHHHHHHHHTSSS
T ss_pred -HHHHHHHHHHHHHcCC
Confidence 5677888888888764
No 291
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=39.24 E-value=1.7e+02 Score=24.52 Aligned_cols=99 Identities=10% Similarity=0.025 Sum_probs=56.9
Q ss_pred eEEeecCCcccHHHHHHHHHHhhcCCCeEEecC---C----C--C-----CChHHHHhhcCceeeEEEeecCCCCCcChh
Q 015435 101 VTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQ---P----T--W-----GNHPKVFTLAGLSVKTYRYYDPATRGLNFQ 166 (407)
Q Consensus 101 i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~---p----~--y-----~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~ 166 (407)
++. .+||..+..++. .+...|-.|.... + + | ......++..|+....+++..+ ..-..+
T Consensus 8 vvl--~SGGkDSs~al~---~l~~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~--~~~e~e 80 (237)
T 3rjz_A 8 AVL--YSGGKDSNYALY---WAIKNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGE--KEKEVE 80 (237)
T ss_dssp EEE--CCSSHHHHHHHH---HHHHTTCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC--------CHH
T ss_pred EEE--ecCcHHHHHHHH---HHHHcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCC--chHHHH
Confidence 445 888888887764 2244565553211 1 1 1 1123456678999888887422 223467
Q ss_pred hHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceee
Q 015435 167 GLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPF 215 (407)
Q Consensus 167 ~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li 215 (407)
++.+++.+. ....+ + +|-+.+......+-+.|.+.|+..+
T Consensus 81 ~l~~~l~~~-~i~~v-v-------~Gdi~s~yqr~r~e~vc~~~gl~~~ 120 (237)
T 3rjz_A 81 DLKRVLSGL-KIQGI-V-------AGALASKYQRKRIEKVAKELGLEVY 120 (237)
T ss_dssp HHHHHHTTS-CCSEE-E-------CC---CCSHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhc-CCcEE-E-------ECCcchHHHHHHHHHHHHHcCCEEE
Confidence 777777632 22232 2 4778888888888899999997766
No 292
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=39.14 E-value=73 Score=26.98 Aligned_cols=95 Identities=11% Similarity=-0.011 Sum_probs=49.0
Q ss_pred cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC---CCCcEEE
Q 015435 106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA---PSGAIVL 182 (407)
Q Consensus 106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~---~~~~~v~ 182 (407)
..|++.+|-.++ .......|-+|++.+-.-..... +...+.+...+.. + --|.+++++.+.+. -.+.-++
T Consensus 7 VTGas~GIG~ai-a~~la~~Ga~V~~~~~~~~~~~~-~~~~~~~~~~~~~--D---v~~~~~v~~~v~~~~~~~g~iDiL 79 (247)
T 3ged_A 7 VTGGGHGIGKQI-CLDFLEAGDKVCFIDIDEKRSAD-FAKERPNLFYFHG--D---VADPLTLKKFVEYAMEKLQRIDVL 79 (247)
T ss_dssp EESTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHH-HHTTCTTEEEEEC--C---TTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred EecCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHH-HHHhcCCEEEEEe--c---CCCHHHHHHHHHHHHHHcCCCCEE
Confidence 566677777663 23345688888876543221122 2233556666655 1 23555665554321 1233345
Q ss_pred EecCCCCCCCCC--CCHHHHHHHHHHH
Q 015435 183 LHACAHNPTGVD--PTLEQWEQIRQLM 207 (407)
Q Consensus 183 i~~~p~NPtG~~--~~~~~l~~i~~~~ 207 (407)
|.+-..++.+.. ++.++|+++.++-
T Consensus 80 VNNAG~~~~~~~~~~~~e~~~~~~~vN 106 (247)
T 3ged_A 80 VNNACRGSKGILSSLLYEEFDYILSVG 106 (247)
T ss_dssp EECCCCCCCCGGGTCCHHHHHHHHHHH
T ss_pred EECCCCCCCCCcccCCHHHHHHHHHHH
Confidence 533333333332 5678888876653
No 293
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=39.11 E-value=20 Score=33.93 Aligned_cols=29 Identities=7% Similarity=0.250 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++++++++.|+++|+.||.|-++.....
T Consensus 97 ~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 125 (484)
T 2aaa_A 97 ADNLKSLSDALHARGMYLMVDVVPDHMGY 125 (484)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCSBCCB
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCCcCC
Confidence 89999999999999999999999876654
No 294
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=39.07 E-value=20 Score=34.01 Aligned_cols=29 Identities=7% Similarity=0.221 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++++++++.|+++|+.||.|-++.....
T Consensus 102 ~~df~~Lv~~aH~~Gi~VilD~V~NH~s~ 130 (488)
T 2wc7_A 102 NEAFKELLDAAHQRNIKVVLDGVFNHSSR 130 (488)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCcCCC
Confidence 79999999999999999999999876654
No 295
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=38.45 E-value=26 Score=33.91 Aligned_cols=29 Identities=10% Similarity=0.338 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++++++++.|+++|+.||.|-++.....
T Consensus 79 ~~df~~Lv~~aH~~Gi~VilD~V~NHts~ 107 (557)
T 1zja_A 79 MEDFDRLMAELKKRGMRLMVDVVINHSSD 107 (557)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence 89999999999999999999999876654
No 296
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=38.32 E-value=23 Score=33.15 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 196 TLEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 196 ~~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
+.++++++++.|+++|+.||+|-++.....
T Consensus 82 t~~~~~~lv~~~h~~Gi~vi~D~V~NH~~~ 111 (449)
T 3dhu_A 82 TLADFKALTDRAHELGMKVMLDIVYNHTSP 111 (449)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEECT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccCcCcC
Confidence 389999999999999999999999766554
No 297
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=38.29 E-value=1.5e+02 Score=25.07 Aligned_cols=100 Identities=11% Similarity=0.074 Sum_probs=53.2
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC---
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--- 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--- 175 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+-.-..........|.++..+.. |- -|.+++++.+.+.
T Consensus 11 ~k~vl--VTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-Dv----~~~~~v~~~~~~~~~~ 82 (271)
T 3tzq_B 11 NKVAI--ITGACGGIGLET-SRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVV-DL----TNEVSVRALIDFTIDT 82 (271)
T ss_dssp TCEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEEC-CT----TCHHHHHHHHHHHHHH
T ss_pred CCEEE--EECCCcHHHHHH-HHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEEC-CC----CCHHHHHHHHHHHHHH
Confidence 34556 667777777653 2233557888887765555555555555666666665 12 3556666555421
Q ss_pred CCCcEEEEecCCCC-C-CCC--CCCHHHHHHHHHH
Q 015435 176 PSGAIVLLHACAHN-P-TGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 176 ~~~~~v~i~~~p~N-P-tG~--~~~~~~l~~i~~~ 206 (407)
-...-+++++-... + .+. -.+.+++++..+.
T Consensus 83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~v 117 (271)
T 3tzq_B 83 FGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTV 117 (271)
T ss_dssp HSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHH
Confidence 11233455233222 2 111 2466777766543
No 298
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=38.13 E-value=26 Score=33.98 Aligned_cols=29 Identities=10% Similarity=0.283 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++++++++.|+++|+.||+|-++.....
T Consensus 92 ~~df~~lv~~aH~~Gi~VilD~V~NH~s~ 120 (570)
T 1m53_A 92 MEDFDSLVAEMKKRNMRLMIDVVINHTSD 120 (570)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence 89999999999999999999999876654
No 299
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=37.32 E-value=1.8e+02 Score=24.18 Aligned_cols=66 Identities=8% Similarity=-0.115 Sum_probs=36.8
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHH
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLR 173 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~ 173 (407)
..++ ..|+++.+-..+ ...+...|-+|++..-.-.......+..+.++..++.+ - -|.+++++.+.
T Consensus 13 k~vl--VTGasggiG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-~----~~~~~v~~~~~ 78 (265)
T 2o23_A 13 LVAV--ITGGASGLGLAT-AERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPAD-V----TSEKDVQTALA 78 (265)
T ss_dssp CEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECC-T----TCHHHHHHHHH
T ss_pred CEEE--EECCCChHHHHH-HHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcC-C----CCHHHHHHHHH
Confidence 4555 567777776653 22334578888776544344444444446566666551 2 35566665554
No 300
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=37.13 E-value=1.1e+02 Score=26.02 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=50.0
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH---HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC-
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK---VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA- 175 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~- 175 (407)
..++ ..|++.++...+ ...+...|-+|++..-.-..... .++..|.++..+.++ - -|.+++++.+.+.
T Consensus 5 k~~l--VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D-v----~d~~~v~~~~~~~~ 76 (264)
T 3tfo_A 5 KVIL--ITGASGGIGEGI-ARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLD-V----TDRHSVAAFAQAAV 76 (264)
T ss_dssp CEEE--ESSTTSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECC-T----TCHHHHHHHHHHHH
T ss_pred CEEE--EeCCccHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcC-C----CCHHHHHHHHHHHH
Confidence 4566 677778877763 22334578888776533222222 223446677777651 2 3556665554321
Q ss_pred --CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 176 --PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 176 --~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
-...-++|++-...+.+. -.+.+++++..++
T Consensus 77 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~v 111 (264)
T 3tfo_A 77 DTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDV 111 (264)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 112334553333333332 1466777666544
No 301
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=37.10 E-value=30 Score=33.97 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 195 PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 195 ~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
-+.++++++++.|+++|+-||.|-++..+..+
T Consensus 200 G~~~~~~~lv~~~H~~Gi~VilD~V~NH~~~~ 231 (618)
T 3m07_A 200 GTPDDFKAFIDAAHGYGLSVVLDIVLNHFGPE 231 (618)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCSCCCSS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEeecCccCCCC
Confidence 34899999999999999999999998877644
No 302
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=36.97 E-value=94 Score=26.43 Aligned_cols=66 Identities=6% Similarity=-0.164 Sum_probs=38.5
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHH
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLR 173 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~ 173 (407)
..++ ..|+++.+-..+ ...+...|.+|++..-.-..........+.++..+.. |- -|.+.+++.+.
T Consensus 6 k~vl--VTGas~gIG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-Dv----~~~~~~~~~~~ 71 (281)
T 3m1a_A 6 KVWL--VTGASSGFGRAI-AEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISL-DV----TDGERIDVVAA 71 (281)
T ss_dssp CEEE--ETTTTSHHHHHH-HHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEEC-CT----TCHHHHHHHHH
T ss_pred cEEE--EECCCChHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEe-eC----CCHHHHHHHHH
Confidence 4556 677777777663 2233558888887765444444555555656666655 12 35566665543
No 303
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=36.76 E-value=1.8e+02 Score=24.84 Aligned_cols=100 Identities=7% Similarity=0.013 Sum_probs=51.3
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCC-------Ch---HHHHhhcCceeeEEEeecCCCCCcChhhH
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWG-------NH---PKVFTLAGLSVKTYRYYDPATRGLNFQGL 168 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~-------~~---~~~~~~~G~~~~~v~~~~~~~~~~d~~~l 168 (407)
..+++ ..|++.++-..+ ...+...|-+|++..-.-. .. ...+...|.++..+..+ - -|.+++
T Consensus 9 ~k~vl--VTGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v----~~~~~v 80 (285)
T 3sc4_A 9 GKTMF--ISGGSRGIGLAI-AKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGD-I----RDGDAV 80 (285)
T ss_dssp TCEEE--EESCSSHHHHHH-HHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECC-T----TSHHHH
T ss_pred CCEEE--EECCCCHHHHHH-HHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECC-C----CCHHHH
Confidence 34566 667777777663 2333557888877643322 11 22334557777777662 2 355666
Q ss_pred HHHHHcC---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 169 LEDLRAA---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 169 ~~~i~~~---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
++.+.+. -...-++|++-...+.+. -.+.+++++..+.
T Consensus 81 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~v 123 (285)
T 3sc4_A 81 AAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGI 123 (285)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 6554421 112334453333332222 2567777766554
No 304
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=36.63 E-value=41 Score=16.64 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015435 316 LELKAMADRIISMRQQLF 333 (407)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~ 333 (407)
+.++.+.+++++.++.++
T Consensus 8 keledlqerlrklrkklr 25 (27)
T 3twe_A 8 KELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 445556666666665554
No 305
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=36.45 E-value=85 Score=26.24 Aligned_cols=100 Identities=11% Similarity=0.071 Sum_probs=48.6
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC---
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--- 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--- 175 (407)
..+++ ..|++.++-..+ .......|-+|++..-.-.......+..+.+...+.. | --|.+++++.+.+.
T Consensus 9 gk~~l--VTGas~gIG~a~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-D----v~d~~~v~~~~~~~~~~ 80 (248)
T 3op4_A 9 GKVAL--VTGASRGIGKAI-AELLAERGAKVIGTATSESGAQAISDYLGDNGKGMAL-N----VTNPESIEAVLKAITDE 80 (248)
T ss_dssp TCEEE--ESSCSSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEEC-C----TTCHHHHHHHHHHHHHH
T ss_pred CCEEE--EeCCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEE-e----CCCHHHHHHHHHHHHHH
Confidence 34566 677777777663 2233557888877653322222333333444555544 1 13556666555421
Q ss_pred CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 176 PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 176 ~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
-...-+++++-...+.+. -.+.+++++..+.
T Consensus 81 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 113 (248)
T 3op4_A 81 FGGVDILVNNAGITRDNLLMRMKEEEWSDIMET 113 (248)
T ss_dssp HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 112334552332222222 2456777666443
No 306
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1
Probab=36.26 E-value=29 Score=33.52 Aligned_cols=29 Identities=14% Similarity=0.404 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++++++++.|+++|+.||+|-++.....
T Consensus 78 ~~df~~lv~~~h~~Gi~VilD~V~NH~s~ 106 (558)
T 1uok_A 78 MEDWDELLHEMHERNMKLMMDLVVNHTSD 106 (558)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence 89999999999999999999999876553
No 307
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=36.11 E-value=2e+02 Score=24.37 Aligned_cols=102 Identities=9% Similarity=-0.020 Sum_probs=49.3
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH---HhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV---FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~---~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 175 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+-.-...... +...|.++..+..+ -. ..-+++.+.+.+.+.
T Consensus 33 gk~~l--VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-v~-~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 33 GRTAL--VTGSSRGIGAAI-AEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGD-LS-EAGAGTDLIERAEAI 107 (275)
T ss_dssp TCEEE--ETTCSSHHHHHH-HHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECC-TT-STTHHHHHHHHHHHH
T ss_pred CCEEE--EECCCCHHHHHH-HHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEec-CC-CHHHHHHHHHHHHHh
Confidence 35666 677778877763 233355788887765433333222 23446677777652 21 112333333333322
Q ss_pred CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 176 PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 176 ~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
...-++|++....+.+. -.+.+++++..+.
T Consensus 108 -g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~v 139 (275)
T 4imr_A 108 -APVDILVINASAQINATLSALTPNDLAFQLAV 139 (275)
T ss_dssp -SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred -CCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 23334552332222222 2456777666543
No 308
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=36.00 E-value=29 Score=34.27 Aligned_cols=30 Identities=3% Similarity=0.081 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHcCceeeecccccccc
Q 015435 195 PTLEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 195 ~~~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
-+.++++++++.||++|+-||.|-++....
T Consensus 283 Gt~~df~~LV~~aH~~GI~VIlD~V~NHts 312 (645)
T 4aef_A 283 GGDRAFVDLLSELKRFDIKVILDGVFHHTS 312 (645)
T ss_dssp TCHHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred CCHHHHHHHHHHhhhcCCEEEEEecccccc
Confidence 359999999999999999999999986544
No 309
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=35.93 E-value=1.4e+02 Score=25.39 Aligned_cols=100 Identities=10% Similarity=0.098 Sum_probs=50.6
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH---HhhcCceeeEEEeecCCCCCcChhhHHHHHHc-
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV---FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRA- 174 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~---~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~- 174 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+-.-...... ++..|.++..+.. | --|.+++++.+.+
T Consensus 26 gk~~l--VTGas~gIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-D----v~d~~~v~~~~~~~ 97 (271)
T 4ibo_A 26 GRTAL--VTGSSRGLGRAM-AEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAF-D----VTSESEIIEAFARL 97 (271)
T ss_dssp TCEEE--ETTCSSHHHHHH-HHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCC-C----TTCHHHHHHHHHHH
T ss_pred CCEEE--EeCCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc-C----CCCHHHHHHHHHHH
Confidence 45666 677778877763 233355888888875432222222 2234666666655 1 2356666655542
Q ss_pred --CCCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 175 --APSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 175 --~~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
.-...-+++++-...+.+. -.+.+++++..+.
T Consensus 98 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 133 (271)
T 4ibo_A 98 DEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDT 133 (271)
T ss_dssp HHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHH
Confidence 1123334552332222222 2466777766544
No 310
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=35.66 E-value=1.9e+02 Score=24.19 Aligned_cols=64 Identities=11% Similarity=-0.015 Sum_probs=33.9
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHH
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLR 173 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~ 173 (407)
..++ ..|++.++-..+ ...+...|-+|++..-.-......+...+...+..++ -|.+++++.+.
T Consensus 28 k~vl--VTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv-------~~~~~v~~~~~ 91 (260)
T 3gem_A 28 APIL--ITGASQRVGLHC-ALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDF-------SCETGIMAFID 91 (260)
T ss_dssp CCEE--ESSTTSHHHHHH-HHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCT-------TSHHHHHHHHH
T ss_pred CEEE--EECCCCHHHHHH-HHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCC-------CCHHHHHHHHH
Confidence 3455 667777777663 2233457878777654333334444455544433333 25555555543
No 311
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=35.47 E-value=31 Score=33.78 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++++++++.|+++|+.||+|-++.....
T Consensus 198 ~~df~~Lv~~aH~~Gi~VilD~V~NH~~~ 226 (601)
T 3edf_A 198 NEDFVRLSTEARKRGMGLIQDVVLSHIGK 226 (601)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCcccCC
Confidence 89999999999999999999999765543
No 312
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*
Probab=35.45 E-value=21 Score=36.71 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCceeeecccccccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
.++++++++.|+++|+-||.|-+|....
T Consensus 369 ~~efk~lV~~~H~~GI~VILDvV~NH~a 396 (877)
T 3faw_A 369 IAELKQLIHDIHKRGMGVILDVVYNHTA 396 (877)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCCS
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeecccc
Confidence 6999999999999999999999986554
No 313
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=35.13 E-value=60 Score=25.38 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=38.2
Q ss_pred HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015435 142 VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKG 211 (407)
Q Consensus 142 ~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~ 211 (407)
.++..|.+++.+.. ...++++.+.+.+. +..++.+ +.-..+ ....++++++.+++.+
T Consensus 41 ~l~~~G~eVi~lG~------~~p~e~lv~aa~~~-~~diV~l-S~~~~~-----~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 41 ALRDAGFEVVYTGL------RQTPEQVAMAAVQE-DVDVIGV-SILNGA-----HLHLMKRLMAKLRELG 97 (161)
T ss_dssp HHHHTTCEEECCCS------BCCHHHHHHHHHHT-TCSEEEE-EESSSC-----HHHHHHHHHHHHHHTT
T ss_pred HHHHCCCEEEECCC------CCCHHHHHHHHHhc-CCCEEEE-Eeechh-----hHHHHHHHHHHHHhcC
Confidence 45678999987744 25788888887743 3445555 332222 2778999999998865
No 314
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Probab=34.71 E-value=25 Score=34.54 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 195 PTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 195 ~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
-+.++++++++.|+++|+-||.|-++.....
T Consensus 202 Gt~~~~~~lv~~~H~~Gi~VilD~V~NH~~~ 232 (617)
T 1m7x_A 202 GTRDDFRYFIDAAHAAGLNVILDWVPGHFPT 232 (617)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEEECTTSCCC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEecCcccC
Confidence 4489999999999999999999999877654
No 315
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=34.60 E-value=1.8e+02 Score=23.90 Aligned_cols=99 Identities=6% Similarity=0.078 Sum_probs=48.5
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH---HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHc--
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP---KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRA-- 174 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~-- 174 (407)
..++ ..|++.++-..+ ...+...|-+|++..-.-.... ..++..|.++..+..+ - -|.+++++.+.+
T Consensus 6 k~vl--ITGas~gIG~~~-a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-~----~~~~~~~~~~~~~~ 77 (247)
T 3lyl_A 6 KVAL--VTGASRGIGFEV-AHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLN-I----SDIESIQNFFAEIK 77 (247)
T ss_dssp CEEE--ESSCSSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECC-T----TCHHHHHHHHHHHH
T ss_pred CEEE--EECCCChHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEec-C----CCHHHHHHHHHHHH
Confidence 4555 667777777653 2233557888877653322222 2233446677777662 2 355665555432
Q ss_pred -CCCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 175 -APSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 175 -~~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
.-...-+++++-...+.+. -.+.+++++..+.
T Consensus 78 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~ 112 (247)
T 3lyl_A 78 AENLAIDILVNNAGITRDNLMMRMSEDEWQSVINT 112 (247)
T ss_dssp HTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHH
Confidence 2122334552332222222 2456666665443
No 316
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A*
Probab=34.27 E-value=33 Score=33.45 Aligned_cols=29 Identities=14% Similarity=0.008 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++++++++.|+++|+.||+|-++.....
T Consensus 87 ~~df~~lv~~~h~~Gi~VilD~V~NH~~~ 115 (589)
T 3aj7_A 87 NEDCFALIEKTHKLGMKFITDLVINHCSS 115 (589)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 89999999999999999999999876653
No 317
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Probab=34.03 E-value=22 Score=35.04 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
.++++++++.|+++|+-||.|-+|.....+
T Consensus 181 ~~~~~~lv~~~H~~Gi~VilD~V~nH~~~~ 210 (637)
T 1gjw_A 181 DEEFKAFVEACHILGIRVILDFIPRTAARD 210 (637)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTEEETT
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCCCcCc
Confidence 799999999999999999999998766654
No 318
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=33.92 E-value=2.2e+02 Score=24.12 Aligned_cols=98 Identities=12% Similarity=0.091 Sum_probs=47.6
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH---HhhcCceeeEEEeecCCCCCcChhhHHHH---H
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV---FTLAGLSVKTYRYYDPATRGLNFQGLLED---L 172 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~---~~~~G~~~~~v~~~~~~~~~~d~~~l~~~---i 172 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+-. ...... +...|.++..+..+ - -|.+++++. +
T Consensus 31 gk~~l--VTGas~GIG~ai-a~~la~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~D-v----~d~~~v~~~~~~~ 101 (273)
T 3uf0_A 31 GRTAV--VTGAGSGIGRAI-AHGYARAGAHVLAWGRT-DGVKEVADEIADGGGSAEAVVAD-L----ADLEGAANVAEEL 101 (273)
T ss_dssp TCEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESS-THHHHHHHHHHTTTCEEEEEECC-T----TCHHHHHHHHHHH
T ss_pred CCEEE--EeCCCcHHHHHH-HHHHHHCCCEEEEEcCH-HHHHHHHHHHHhcCCcEEEEEec-C----CCHHHHHHHHHHH
Confidence 45566 667777777663 22335578888776522 222222 22446677777652 2 244444443 3
Q ss_pred HcCCCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 173 RAAPSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 173 ~~~~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
.+.. ..-++|++-...+.+. -.+.+++++..+.
T Consensus 102 ~~~g-~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 136 (273)
T 3uf0_A 102 AATR-RVDVLVNNAGIIARAPAEEVSLGRWREVLTV 136 (273)
T ss_dssp HHHS-CCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HhcC-CCcEEEECCCCCCCCCchhCCHHHHHHHHHH
Confidence 2222 2334552322222222 1456677666544
No 319
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*
Probab=33.59 E-value=31 Score=33.20 Aligned_cols=29 Identities=7% Similarity=0.186 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++++++++.|+++|+.||+|-++.....
T Consensus 78 ~~df~~lv~~~h~~Gi~VilD~V~NH~s~ 106 (543)
T 2zic_A 78 MADMDNLLTQAKMRGIKIIMDLVVNHTSD 106 (543)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCSBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCcccc
Confidence 89999999999999999999999876653
No 320
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP}
Probab=33.57 E-value=33 Score=33.12 Aligned_cols=29 Identities=10% Similarity=0.300 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++++++++.|+++|+.||+|-++.....
T Consensus 78 ~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 106 (555)
T 2ze0_A 78 MDDFDELLAQAHRRGLKVILDLVINHTSD 106 (555)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence 89999999999999999999999876553
No 321
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=33.52 E-value=98 Score=26.83 Aligned_cols=48 Identities=8% Similarity=0.141 Sum_probs=32.5
Q ss_pred cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccc
Q 015435 163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSA 219 (407)
Q Consensus 163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~ 219 (407)
.-++.++++++ ...+.+++.+ +|. +.++.+++.+.|+++|+.++-..+
T Consensus 76 ~~~~~~~ea~~--~Gi~~iVi~t-----~G~--~~~~~~~l~~~A~~~gv~liGPNc 123 (288)
T 2nu8_A 76 FCKDSILEAID--AGIKLIITIT-----EGI--PTLDMLTVKVKLDEAGVRMIGPNT 123 (288)
T ss_dssp GHHHHHHHHHH--TTCSEEEECC-----CCC--CHHHHHHHHHHHHHHTCEEECSSC
T ss_pred HHHHHHHHHHH--CCCCEEEEEC-----CCC--CHHHHHHHHHHHHHcCCEEEecCC
Confidence 34566666666 4556655522 233 477888999999999998886664
No 322
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Probab=33.51 E-value=2.4e+02 Score=25.80 Aligned_cols=67 Identities=7% Similarity=-0.039 Sum_probs=36.9
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhc-CCCeEEecCCCCCC---------------hHHHHhhcCceeeEEEeecCCCCC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHY-HQLTIYIPQPTWGN---------------HPKVFTLAGLSVKTYRYYDPATRG 162 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~-~gd~Vi~~~p~y~~---------------~~~~~~~~G~~~~~v~~~~~~~~~ 162 (407)
..+++ +.|++.++-.++.. .+.. .|-.|++..-.-.. ....++..|.++..+.. + -
T Consensus 47 gKvaL--VTGas~GIG~AiA~-~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~--D---v 118 (405)
T 3zu3_A 47 PKRVL--VIGASTGYGLAARI-TAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSING--D---A 118 (405)
T ss_dssp CSEEE--EESCSSHHHHHHHH-HHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEES--C---T
T ss_pred CCEEE--EeCcchHHHHHHHH-HHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEEC--C---C
Confidence 45666 67777788776422 3344 67777654321111 12234566777777765 1 2
Q ss_pred cChhhHHHHHH
Q 015435 163 LNFQGLLEDLR 173 (407)
Q Consensus 163 ~d~~~l~~~i~ 173 (407)
.|.+.+++.+.
T Consensus 119 td~~~v~~~v~ 129 (405)
T 3zu3_A 119 FSDEIKQLTID 129 (405)
T ss_dssp TSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 36666655543
No 323
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}
Probab=33.22 E-value=27 Score=34.99 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 194 DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 194 ~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.-+.++++++++.|+++|+-||.|-++..+..
T Consensus 309 yGt~~dfk~lV~~~H~~GI~VilD~V~NH~~~ 340 (722)
T 3k1d_A 309 FGTPDDFRALVDALHQAGIGVIVDWVPAHFPK 340 (722)
T ss_dssp GCCHHHHHHHHHHHHHTTCEEEEEECTTCCCC
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEEEeeccCC
Confidence 34689999999999999999999999876654
No 324
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=33.13 E-value=28 Score=34.04 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 196 TLEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 196 ~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
+.++++++++.|+++|+-||.|-++.....+
T Consensus 191 t~~d~~~lv~~~H~~Gi~VilD~V~NH~~~~ 221 (602)
T 2bhu_A 191 RPEDLMALVDAAHRLGLGVFLDVVYNHFGPS 221 (602)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSCCCSS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecccccccC
Confidence 4899999999999999999999998777643
No 325
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=32.50 E-value=28 Score=20.85 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=21.1
Q ss_pred eEEecCCCCCChhHHHHHHHHHHHhhC
Q 015435 381 RISMAGLSSKTVPHLTDAIHAAVTRMG 407 (407)
Q Consensus 381 Ris~~~~~~e~i~~~~~~l~~~l~~~~ 407 (407)
|||+...+..+.+.+...|-.++.++|
T Consensus 5 risitartkkeaekfaailikvfaelg 31 (62)
T 2gjh_A 5 RISITARTKKEAEKFAAILIKVFAELG 31 (62)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEecchhHHHHHHHHHHHHHHHhC
Confidence 677776577788888888888887765
No 326
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A
Probab=32.32 E-value=29 Score=33.96 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHcCceeeecccccccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
.++++++++.|+++|+.||+|-++....
T Consensus 208 ~~dfk~Lv~~aH~~GI~VilD~V~NH~~ 235 (599)
T 3bc9_A 208 KGELENAIDALHNNDIKVYFDAVLNHRM 235 (599)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCCCC
Confidence 8999999999999999999999976654
No 327
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=32.31 E-value=2.2e+02 Score=23.82 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=54.1
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSG 178 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 178 (407)
..+++ ..|++.+|-.+. .......|-+|++.+-.-.. .....+.++..+.. | --|.+++++.+++..+-
T Consensus 11 GK~al--VTGas~GIG~ai-a~~la~~Ga~Vv~~~~~~~~---~~~~~~~~~~~~~~-D----v~~~~~v~~~~~~~g~i 79 (242)
T 4b79_A 11 GQQVL--VTGGSSGIGAAI-AMQFAELGAEVVALGLDADG---VHAPRHPRIRREEL-D----ITDSQRLQRLFEALPRL 79 (242)
T ss_dssp TCEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESSTTS---TTSCCCTTEEEEEC-C----TTCHHHHHHHHHHCSCC
T ss_pred CCEEE--EeCCCCHHHHHH-HHHHHHCCCEEEEEeCCHHH---HhhhhcCCeEEEEe-c----CCCHHHHHHHHHhcCCC
Confidence 45666 677778887774 23345688888876533221 11233445666655 1 24678888888754433
Q ss_pred cEEEEecCCCCCCCCCCCHHHHHHHHHHH
Q 015435 179 AIVLLHACAHNPTGVDPTLEQWEQIRQLM 207 (407)
Q Consensus 179 ~~v~i~~~p~NPtG~~~~~~~l~~i~~~~ 207 (407)
. ++|.+-.-+....-++.++|+++.++-
T Consensus 80 D-iLVNNAGi~~~~~~~~~~~w~~~~~vN 107 (242)
T 4b79_A 80 D-VLVNNAGISRDREEYDLATFERVLRLN 107 (242)
T ss_dssp S-EEEECCCCCCGGGGGSHHHHHHHHHHH
T ss_pred C-EEEECCCCCCCcccCCHHHHHHHHHHh
Confidence 3 455232222223346677777776653
No 328
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=32.07 E-value=1.8e+02 Score=24.14 Aligned_cols=99 Identities=12% Similarity=0.041 Sum_probs=47.2
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCC-CChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC---
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTW-GNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--- 175 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y-~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--- 175 (407)
..++ ..|++..+-..+ ...+...|-+|++.+-.- ......++..|.++..++.+ - -|.+++++.+.+.
T Consensus 8 k~vl--VTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D-v----~~~~~v~~~~~~~~~~ 79 (249)
T 2ew8_A 8 KLAV--ITGGANGIGRAI-AERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCD-V----SQPGDVEAFGKQVIST 79 (249)
T ss_dssp CEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECC-T----TCHHHHHHHHHHHHHH
T ss_pred CEEE--EeCCCcHHHHHH-HHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEee-c----CCHHHHHHHHHHHHHH
Confidence 4555 567777777663 223345788887654322 11222334456666666651 2 3556666554321
Q ss_pred CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 176 PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 176 ~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
-...-+++++-...+.+. -.+.+++++..+.
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 112 (249)
T 2ew8_A 80 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEI 112 (249)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 112334452332222222 1456666655443
No 329
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=31.85 E-value=26 Score=31.86 Aligned_cols=74 Identities=12% Similarity=0.098 Sum_probs=44.3
Q ss_pred HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeee
Q 015435 140 PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA-PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFF 216 (407)
Q Consensus 140 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~-~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 216 (407)
.+.+...++++..+.+.|+.++.+....+-+..... ......+- + ..+.+..++++|+++|++.|+++|+-||-
T Consensus 39 id~mA~~KlN~lH~HltDdq~~rle~~~~~~~~~~~~~~~~g~~~--~-~~~~~g~YT~~di~eiv~YA~~rgI~VIP 113 (367)
T 1yht_A 39 IDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKDGIYI--N-PYTGKPFLSYRQLDDIKAYAKAKGIELIP 113 (367)
T ss_dssp HHHHHHTTCCEEEEECBSSSCBCBCBTTTTBCGGGSEECTTSCEE--C-TTTCCEEBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCcEEEEEEEcCCCceeeecchhhhhhhhccccCCCcC--C-CCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 344557899999999987767766543221100000 00000011 1 12224569999999999999999988874
No 330
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=31.77 E-value=33 Score=34.21 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 196 TLEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 196 ~~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
+.++++++++.|+++|+.||+|-++.....
T Consensus 310 t~~df~~Lv~~aH~~GikVilD~V~NHts~ 339 (696)
T 4aee_A 310 TMEDFEKLVQVLHSRKIKIVLDITMHHTNP 339 (696)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECSSEECT
T ss_pred CHHHHHHHHHHHHHCCCEEEEeccccccCc
Confidence 489999999999999999999999876653
No 331
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=31.75 E-value=2.7e+02 Score=24.62 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=51.0
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC----------hHHHHhhcCceeeEEEeecCCCCCcChhhH
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN----------HPKVFTLAGLSVKTYRYYDPATRGLNFQGL 168 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~----------~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l 168 (407)
..+++ ..|++.+|-..+ ...+...|-+|++..-.-.. ....++..|.++..+..+ - -|.+++
T Consensus 45 gk~vl--VTGas~GIG~ai-a~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~D-v----~d~~~v 116 (346)
T 3kvo_A 45 GCTVF--ITGASRGIGKAI-ALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVD-V----RDEQQI 116 (346)
T ss_dssp TCEEE--EETTTSHHHHHH-HHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECC-T----TCHHHH
T ss_pred CCEEE--EeCCChHHHHHH-HHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEcc-C----CCHHHH
Confidence 45666 677777777763 23345678887766432221 223344567777777662 2 356666
Q ss_pred HHHHHcC---CCCcEEEEecCCCCCCC--CCCCHHHHHHHHH
Q 015435 169 LEDLRAA---PSGAIVLLHACAHNPTG--VDPTLEQWEQIRQ 205 (407)
Q Consensus 169 ~~~i~~~---~~~~~v~i~~~p~NPtG--~~~~~~~l~~i~~ 205 (407)
++.+.+. -...-++|++-...+.+ .-.+.++++++.+
T Consensus 117 ~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~ 158 (346)
T 3kvo_A 117 SAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMN 158 (346)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 6655421 11233455233222222 2255677766544
No 332
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=31.70 E-value=1.2e+02 Score=25.45 Aligned_cols=66 Identities=8% Similarity=-0.094 Sum_probs=36.3
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHH
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLR 173 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~ 173 (407)
..++ ..|++.++-..+ ...+...|-+|++.+-.-..........+.++..+..+ - -|.+++++.+.
T Consensus 10 k~vl--ITGas~gIG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-~----~~~~~~~~~~~ 75 (261)
T 3n74_A 10 KVAL--ITGAGSGFGEGM-AKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAAD-I----SKEADVDAAVE 75 (261)
T ss_dssp CEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECC-T----TSHHHHHHHHH
T ss_pred CEEE--EECCCchHHHHH-HHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEec-C----CCHHHHHHHHH
Confidence 4555 666777776653 23335578888777543333333444556666666652 2 35555555543
No 333
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=31.63 E-value=86 Score=26.66 Aligned_cols=50 Identities=14% Similarity=0.037 Sum_probs=34.4
Q ss_pred CCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccc
Q 015435 161 RGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSA 219 (407)
Q Consensus 161 ~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~ 219 (407)
+.+|.-.+.++.. -+-.+++++.. .++.++++++.+.|++.|+.+++|-.
T Consensus 109 fi~~~~qi~ea~~--~GAD~ilLi~a-------~l~~~~l~~l~~~a~~lGl~~lvEv~ 158 (251)
T 1i4n_A 109 FYIDTVQVKLASS--VGADAILIIAR-------ILTAEQIKEIYEAAEELGMDSLVEVH 158 (251)
T ss_dssp CCCSTHHHHHHHH--TTCSEEEEEGG-------GSCHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCHHHHHHHHH--cCCCEEEEecc-------cCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 5677777777544 23445455332 45678899999999999988888864
No 334
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=31.61 E-value=31 Score=34.39 Aligned_cols=28 Identities=7% Similarity=0.080 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHcCceeeecccccccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
.++++++++.||++|+.||+|-++....
T Consensus 107 ~~df~~Lv~~aH~~GikVilD~V~NHts 134 (686)
T 1qho_A 107 WTTFDTLVNDAHQNGIKVIVDFVPNHST 134 (686)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 9999999999999999999999976443
No 335
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=31.58 E-value=31 Score=34.38 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCceeeecccccccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
.++++++++.||++|+.||+|-++....
T Consensus 115 ~~dfk~Lv~~aH~~GI~VilD~V~NHts 142 (686)
T 1d3c_A 115 IADFQNLIAAAHAKNIKVIIDFAPNHTS 142 (686)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCcCccc
Confidence 9999999999999999999999976544
No 336
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=31.51 E-value=30 Score=33.44 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
.++++++++.|+++|+-||.|-++.....+
T Consensus 167 ~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~ 196 (558)
T 3vgf_A 167 PEGFRKLVDEAHKKGLGVILDVVYNHVGPE 196 (558)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSCCCSS
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeeccccCC
Confidence 899999999999999999999998766543
No 337
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=31.35 E-value=2.3e+02 Score=25.48 Aligned_cols=114 Identities=13% Similarity=0.143 Sum_probs=56.9
Q ss_pred CCceEEeecCCcccHHHHHHHHHHhh-cCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHH---
Q 015435 98 DNRVTTVQCLSGTGSLRVGAEFLARH-YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLR--- 173 (407)
Q Consensus 98 ~~~i~~~~t~g~t~a~~~~~~~~~~~-~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~--- 173 (407)
...++++....|++=..++..+...+ ..|..|++.+.........++..|.....+.+.++. +.+.+.+.+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~----~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPD----NGEQALEIMELLV 148 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCS----SHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCC----cHHHHHHHHHHHH
Confidence 35565544666666666655454433 356677666654433333455666654433332222 4455444432
Q ss_pred cCCCCcEEEEecCCCCCCC-CCCC---------------HHHHHHHHHHHHHcCceeee
Q 015435 174 AAPSGAIVLLHACAHNPTG-VDPT---------------LEQWEQIRQLMRSKGLLPFF 216 (407)
Q Consensus 174 ~~~~~~~v~i~~~p~NPtG-~~~~---------------~~~l~~i~~~~~~~~~~li~ 216 (407)
+.....+|+| .+...-.. .-+. ...+.+|..+++++++.+|+
T Consensus 149 ~~~~~~lVVI-Dsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~ 206 (366)
T 1xp8_A 149 RSGAIDVVVV-DSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIF 206 (366)
T ss_dssp TTTCCSEEEE-ECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred hcCCCCEEEE-eChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 1234566666 44443321 1110 13455666667888866655
No 338
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=31.27 E-value=32 Score=34.28 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHcCceeeecccccccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
.++++++++.||++|+.||+|-++....
T Consensus 111 ~~df~~Lv~~aH~~GIkVilD~V~NHts 138 (680)
T 1cyg_A 111 LSDFQRLVDAAHAKGIKVIIDFAPNHTS 138 (680)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCCC
Confidence 9999999999999999999999975443
No 339
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=30.81 E-value=88 Score=25.88 Aligned_cols=98 Identities=13% Similarity=0.017 Sum_probs=46.2
Q ss_pred eEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC---CC
Q 015435 101 VTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA---PS 177 (407)
Q Consensus 101 i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~---~~ 177 (407)
.++ ..|++.++-..+ ...+...|-+|++.+-.-..........+.++..+.. |- -|.+++++.+.+. -.
T Consensus 5 ~vl--VTGas~GIG~a~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-D~----~~~~~v~~~~~~~~~~~g 76 (235)
T 3l6e_A 5 HII--VTGAGSGLGRAL-TIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVA-DL----AHHEDVDVAFAAAVEWGG 76 (235)
T ss_dssp EEE--EESTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEC-CT----TSHHHHHHHHHHHHHHHC
T ss_pred EEE--EECCCCHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEEC-CC----CCHHHHHHHHHHHHHhcC
Confidence 445 567777777763 2233457888877654322223333333445555555 11 3556665554321 11
Q ss_pred CcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 178 GAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 178 ~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
..-+++++-...+.+. -.+.+++++..+.
T Consensus 77 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 107 (235)
T 3l6e_A 77 LPELVLHCAGTGEFGPVGVYTAEQIRRVMES 107 (235)
T ss_dssp SCSEEEEECCCC------CCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCCCChHhCCHHHHHHHHHH
Confidence 2233442332222222 2456777766554
No 340
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=30.74 E-value=1.4e+02 Score=25.35 Aligned_cols=100 Identities=11% Similarity=0.058 Sum_probs=50.8
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC---
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--- 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--- 175 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+-.-..........+.++..+..+ - -|.+++++.+.+.
T Consensus 28 ~k~~l--VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-v----~d~~~v~~~~~~~~~~ 99 (272)
T 4dyv_A 28 KKIAI--VTGAGSGVGRAV-AVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTD-V----TDPDSVRALFTATVEK 99 (272)
T ss_dssp CCEEE--ETTTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECC-T----TSHHHHHHHHHHHHHH
T ss_pred CCEEE--EeCCCcHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEec-C----CCHHHHHHHHHHHHHH
Confidence 45666 778888887763 22334578888776543222333444455566666551 1 3556666555421
Q ss_pred CCCcEEEEecCCCC-CCCC--CCCHHHHHHHHHH
Q 015435 176 PSGAIVLLHACAHN-PTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 176 ~~~~~v~i~~~p~N-PtG~--~~~~~~l~~i~~~ 206 (407)
-...-++|++-... +.+. -.+.+++++..+.
T Consensus 100 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~v 133 (272)
T 4dyv_A 100 FGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDT 133 (272)
T ss_dssp HSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHh
Confidence 11233455232221 1121 2456677665443
No 341
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=30.66 E-value=29 Score=23.85 Aligned_cols=23 Identities=17% Similarity=-0.062 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCceeeeccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSA 219 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~ 219 (407)
-.--.+|.++|+++|+.++.|-.
T Consensus 26 ~~~A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 26 DAKALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp THHHHHHHHHHHHTTCCEEECHH
T ss_pred cHHHHHHHHHHHHcCCCEEeCHH
Confidence 34678899999999999999874
No 342
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=30.62 E-value=33 Score=34.17 Aligned_cols=28 Identities=7% Similarity=0.132 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHcCceeeecccccccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
.++++++++.||++|+.||+|-++....
T Consensus 116 ~~dfk~Lv~~aH~~GikVilD~V~NHts 143 (683)
T 3bmv_A 116 FTDFQNLINTAHAHNIKVIIDFAPNHTS 143 (683)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEEcccccc
Confidence 9999999999999999999999976544
No 343
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=30.40 E-value=82 Score=26.87 Aligned_cols=100 Identities=10% Similarity=0.022 Sum_probs=48.4
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCC---------Ch------HHHHhhcCceeeEEEeecCCCCCc
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWG---------NH------PKVFTLAGLSVKTYRYYDPATRGL 163 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~---------~~------~~~~~~~G~~~~~v~~~~~~~~~~ 163 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+-... .. ...++..|.++..+..+ - -
T Consensus 10 gk~vl--VTGas~gIG~~i-a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~----~ 81 (287)
T 3pxx_A 10 DKVVL--VTGGARGQGRSH-AVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVD-V----R 81 (287)
T ss_dssp TCEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECC-T----T
T ss_pred CCEEE--EeCCCChHHHHH-HHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEcc-C----C
Confidence 34566 667777777663 2333557888877542210 01 11223446666666651 1 3
Q ss_pred ChhhHHHHHHcC---CCCcEEEEecCCCCCCCCCCCHHHHHHHHHH
Q 015435 164 NFQGLLEDLRAA---PSGAIVLLHACAHNPTGVDPTLEQWEQIRQL 206 (407)
Q Consensus 164 d~~~l~~~i~~~---~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~ 206 (407)
|.+++++.+.+. -...-++|++-...+.+...+.+++++..+.
T Consensus 82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~ 127 (287)
T 3pxx_A 82 DRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDV 127 (287)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhh
Confidence 555555544321 1123344533333333333556666665443
No 344
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=30.40 E-value=46 Score=28.72 Aligned_cols=74 Identities=11% Similarity=0.018 Sum_probs=46.3
Q ss_pred CCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHH
Q 015435 125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIR 204 (407)
Q Consensus 125 ~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~ 204 (407)
.|++|.+.- |.++...+...+.++..+..+ +..+.. ++...+.+- |....+++ ||+.+--+-+.+|+
T Consensus 140 ~g~kV~vIG--~fP~i~~~~~~~~~l~V~E~~-p~~g~~-p~~~~~~~l--p~~D~vii-------TgstlvN~Tl~~lL 206 (270)
T 3l5o_A 140 KGKKVGVVG--HFPHLESLLEPICDLSILEWS-PEEGDY-PLPASEFIL--PECDYVYI-------TCASVVDKTLPRLL 206 (270)
T ss_dssp TTSEEEEES--CCTTHHHHHTTTSEEEEEESS-CCTTCE-EGGGHHHHG--GGCSEEEE-------ETHHHHHTCHHHHH
T ss_pred CCCEEEEEC--CchhHHHHHhcCCCEEEEECC-CCCCCC-ChhHHHHhh--ccCCEEEE-------EeehhhcCCHHHHH
Confidence 678888874 446666666667888888774 443332 333333333 56778787 45555455688898
Q ss_pred HHHHHcC
Q 015435 205 QLMRSKG 211 (407)
Q Consensus 205 ~~~~~~~ 211 (407)
++|++-.
T Consensus 207 ~~~~~a~ 213 (270)
T 3l5o_A 207 ELSRNAR 213 (270)
T ss_dssp HHTTTSS
T ss_pred hhCCCCC
Confidence 8897543
No 345
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A
Probab=30.24 E-value=33 Score=34.65 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 195 PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 195 ~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
-+.++++++++.|+++|+-||.|-++.....+
T Consensus 248 Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~ 279 (755)
T 3aml_A 248 GTPEDLKYLVDKAHSLGLRVLMDVVHSHASNN 279 (755)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCSCBCCC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEeccccccc
Confidence 35899999999999999999999998777544
No 346
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=30.19 E-value=1.5e+02 Score=25.22 Aligned_cols=100 Identities=9% Similarity=0.022 Sum_probs=49.5
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh----hcCceeeEEEeecCCCCCcChhhHHHHHHc
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT----LAGLSVKTYRYYDPATRGLNFQGLLEDLRA 174 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~ 174 (407)
..+++ ..|++.++-..+ ...+...|-+|++..-.-........ ..|.++..+..+ - -|.+++++.+.+
T Consensus 27 ~k~~l--VTGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D-v----~~~~~v~~~~~~ 98 (277)
T 4fc7_A 27 DKVAF--ITGGGSGIGFRI-AEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMD-V----RAPPAVMAAVDQ 98 (277)
T ss_dssp TCEEE--EETTTSHHHHHH-HHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECC-T----TCHHHHHHHHHH
T ss_pred CCEEE--EeCCCchHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcC-C----CCHHHHHHHHHH
Confidence 34566 667777777763 23335678888776533222222222 246677777662 2 355666555442
Q ss_pred C---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 175 A---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 175 ~---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
. -...-++|++-...+.+. -.+.+++++..+.
T Consensus 99 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 135 (277)
T 4fc7_A 99 ALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDI 135 (277)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHH
Confidence 1 112334552332222222 1466777766544
No 347
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=29.16 E-value=2.3e+02 Score=23.27 Aligned_cols=76 Identities=5% Similarity=-0.089 Sum_probs=40.2
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSG 178 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 178 (407)
+..++ ..|++..+-..+ ...+...|-+|++..-.-.......+..+.++..+.. | --|.+.+.+.+.+..+.
T Consensus 14 ~k~vl--VTGas~gIG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-D----~~~~~~~~~~~~~~~~i 85 (249)
T 3f9i_A 14 GKTSL--ITGASSGIGSAI-ARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVC-N----LANKEECSNLISKTSNL 85 (249)
T ss_dssp TCEEE--ETTTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEEC-C----TTSHHHHHHHHHTCSCC
T ss_pred CCEEE--EECCCChHHHHH-HHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEc-C----CCCHHHHHHHHHhcCCC
Confidence 44555 566777776653 2233557888887654322233333333334444443 1 24677888887744333
Q ss_pred cEEEE
Q 015435 179 AIVLL 183 (407)
Q Consensus 179 ~~v~i 183 (407)
. +++
T Consensus 86 d-~li 89 (249)
T 3f9i_A 86 D-ILV 89 (249)
T ss_dssp S-EEE
T ss_pred C-EEE
Confidence 3 344
No 348
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A
Probab=29.14 E-value=39 Score=33.25 Aligned_cols=31 Identities=6% Similarity=0.071 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHcC--c--eeeeccccccccC
Q 015435 195 PTLEQWEQIRQLMRSKG--L--LPFFDSAYQGFAS 225 (407)
Q Consensus 195 ~~~~~l~~i~~~~~~~~--~--~li~D~~y~~~~~ 225 (407)
-+.++++++++.|+++| + -||.|-++.....
T Consensus 236 Gt~~dfk~LV~~~H~~G~~I~~~VIlD~V~NH~~~ 270 (637)
T 1ji1_A 236 GDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGD 270 (637)
T ss_dssp CCHHHHHHHHHHHHCSSSSSCCEEEEEECCSBCCT
T ss_pred CCHHHHHHHHHHHHhCCCCccceEEEEECcccCCC
Confidence 34899999999999999 9 9999999876654
No 349
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=29.02 E-value=1.9e+02 Score=24.46 Aligned_cols=100 Identities=6% Similarity=-0.051 Sum_probs=52.6
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC--hHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC-
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN--HPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA- 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~- 175 (407)
+.+++ ..|++.+|-.+. .......|-.|++..-.-.. ....+...|.+...++.+ - -|.+++++.+.+.
T Consensus 7 gKval--VTGas~GIG~ai-a~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~D-v----~~~~~v~~~v~~~~ 78 (258)
T 4gkb_A 7 DKVVI--VTGGASGIGGAI-SMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVE-L----QDDAQCRDAVAQTI 78 (258)
T ss_dssp TCEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECC-T----TCHHHHHHHHHHHH
T ss_pred CCEEE--EeCCCCHHHHHH-HHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEee-c----CCHHHHHHHHHHHH
Confidence 46777 778888887764 23335578777765533222 222334557777777762 2 2555555544321
Q ss_pred --CCCcEEEEecCCCC-CCCCCCCHHHHHHHHHH
Q 015435 176 --PSGAIVLLHACAHN-PTGVDPTLEQWEQIRQL 206 (407)
Q Consensus 176 --~~~~~v~i~~~p~N-PtG~~~~~~~l~~i~~~ 206 (407)
-.+.-+++.+-..+ +...-.+.++|++..+.
T Consensus 79 ~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~v 112 (258)
T 4gkb_A 79 ATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLER 112 (258)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHH
T ss_pred HHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHH
Confidence 12233455232222 22334567777777554
No 350
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=28.78 E-value=62 Score=22.02 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCceeeecccccccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
.++.+.+++.|++.|++|..|+.-.-+.
T Consensus 32 ~~efe~~~~yA~e~gvLlW~~~~kr~~~ 59 (80)
T 3dgp_A 32 SQEYNLLSKYAQDIGVLLWKDDKKKKFF 59 (80)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHHcCeEEEecCCccEEE
Confidence 8999999999999999999999865554
No 351
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Probab=28.76 E-value=42 Score=33.62 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
.++++++++.|+++|+-||.|-+|.....+
T Consensus 266 ~~dfk~lv~~~H~~Gi~VilDvV~NH~~~~ 295 (718)
T 2vr5_A 266 VLSFKKMVNELHNAGIEVIIDVVYNHTAEG 295 (718)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCSCCSSC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccCcccCc
Confidence 699999999999999999999998776654
No 352
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=28.62 E-value=49 Score=33.38 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
.++++++++.|+++|+-||.|-+|.....+
T Consensus 272 ~~efk~lV~~~H~~Gi~VilDvV~NH~~~~ 301 (750)
T 1bf2_A 272 TAEFQAMVQAFHNAGIKVYMDVVYNHTAEG 301 (750)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSSCTTC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCc
Confidence 899999999999999999999998766644
No 353
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A
Probab=28.53 E-value=39 Score=33.40 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 196 TLEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 196 ~~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
+.++++++++.|+++|+.||.|-++.....
T Consensus 154 t~~df~~Lv~~aH~~GI~VilD~V~NH~s~ 183 (644)
T 3czg_A 154 SNDDLVALTSRLREAGISLCADFVLNHTAD 183 (644)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEEET
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecCCccc
Confidence 389999999999999999999999876654
No 354
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A*
Probab=28.37 E-value=53 Score=32.27 Aligned_cols=29 Identities=7% Similarity=0.231 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++++++++-|+++|+.||+|-++.....
T Consensus 162 ~~d~~~Lv~~ah~~GI~VilD~V~NH~s~ 190 (628)
T 1g5a_A 162 IGDLREVIAALHEAGISAVVDFIFNHTSN 190 (628)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEEET
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCcccc
Confidence 89999999999999999999999876654
No 355
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=28.37 E-value=2.8e+02 Score=23.77 Aligned_cols=100 Identities=14% Similarity=0.025 Sum_probs=50.4
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh---hcC-ceeeEEEeecCCCCCcChhhHHHHHHc
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT---LAG-LSVKTYRYYDPATRGLNFQGLLEDLRA 174 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~---~~G-~~~~~v~~~~~~~~~~d~~~l~~~i~~ 174 (407)
...++ ..|++.++-..+ ...+...|-+|++.+-.-........ ..| .++..+..+ - -|.+.+++.+.+
T Consensus 41 ~k~vl--VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D-v----~d~~~v~~~~~~ 112 (293)
T 3rih_A 41 ARSVL--VTGGTKGIGRGI-ATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLD-V----SDPGSCADAART 112 (293)
T ss_dssp TCEEE--ETTTTSHHHHHH-HHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECC-T----TCHHHHHHHHHH
T ss_pred CCEEE--EeCCCcHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEe-C----CCHHHHHHHHHH
Confidence 44666 677777877763 22335578888776544333333322 223 456556551 1 355665555432
Q ss_pred C---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 175 A---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 175 ~---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
. -...-++|++-...+.+. -.+.+++++..+.
T Consensus 113 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~v 149 (293)
T 3rih_A 113 VVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDV 149 (293)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 1 112334553333333332 2467777777554
No 356
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}
Probab=28.23 E-value=36 Score=33.72 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
.++++++++.|+++|+-||.|-++.....+
T Consensus 241 ~~d~~~lv~~~H~~Gi~VilD~V~NH~~~~ 270 (657)
T 2wsk_A 241 LDEFRDAIKALHKAGIEVILDIVLNHSAEL 270 (657)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSCCTTC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeecccccc
Confidence 799999999999999999999998777654
No 357
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=28.15 E-value=1.8e+02 Score=24.22 Aligned_cols=66 Identities=8% Similarity=-0.070 Sum_probs=34.5
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHH
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLR 173 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~ 173 (407)
..++ ..|++..+-..+ ...+...|-+|++.+-.-.......+..|.++..+.. | --|.+++++.+.
T Consensus 7 k~vl--VTGas~giG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-D----~~~~~~v~~~~~ 72 (253)
T 1hxh_A 7 KVAL--VTGGASGVGLEV-VKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRH-D----VSSEADWTLVMA 72 (253)
T ss_dssp CEEE--ETTTTSHHHHHH-HHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECC-C----TTCHHHHHHHHH
T ss_pred CEEE--EeCCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEc-c----CCCHHHHHHHHH
Confidence 4555 667777777763 2233457888877653322222222333555555544 1 235666665554
No 358
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=27.98 E-value=1.7e+02 Score=26.72 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 195 PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 195 ~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
.+.+.+.++++.|+++|+-+++|-.|+++..+
T Consensus 86 ~d~~~~~~~a~~Ak~~GLkVlldfHysD~Wad 117 (399)
T 1ur4_A 86 NDLEKAIQIGKRATANGMKLLADFHYSDFWAD 117 (399)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECSSSSCCS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeccCCccCC
Confidence 56889999999999999999999877766443
No 359
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=27.82 E-value=1.7e+02 Score=27.27 Aligned_cols=134 Identities=10% Similarity=0.095 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhCCCCCCCC---CCceEEeecCCcccHHHHHHHHHHhhc-CCCeEEec--CCCCCChHHHHh----hcCc
Q 015435 79 DFNKLSAKLILGADSPAIK---DNRVTTVQCLSGTGSLRVGAEFLARHY-HQLTIYIP--QPTWGNHPKVFT----LAGL 148 (407)
Q Consensus 79 ~l~~~~a~~~~~~~~~~~~---~~~i~~~~t~g~t~a~~~~~~~~~~~~-~gd~Vi~~--~p~y~~~~~~~~----~~G~ 148 (407)
.+++.+.+.+.. ...... ...++++...+|++=..++.++...+. .|.+|++. ++..+.....++ ..|.
T Consensus 78 ~l~~eL~~~L~~-~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gv 156 (443)
T 3dm5_A 78 IVYEELTKFLGT-EAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHI 156 (443)
T ss_dssp HHHHHHHHHTTS-SCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTC
T ss_pred HHHHHHHHHhcC-cccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCC
Confidence 456666666522 111111 124555446666665555555554443 56666443 344443333333 3343
Q ss_pred eeeEEEeecCCCCCcChhhHH-HHHHcC--CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc
Q 015435 149 SVKTYRYYDPATRGLNFQGLL-EDLRAA--PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY 220 (407)
Q Consensus 149 ~~~~v~~~~~~~~~~d~~~l~-~~i~~~--~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y 220 (407)
.+... ..+.|+.++. +.+... ....+++|-+.+-.+... -...++.++.+..+-+.+++++|...
T Consensus 157 pv~~~------~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~-~lm~el~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 157 EVFGN------PQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDK-ALIEEMKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp EEECC------TTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCH-HHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred cEEec------CCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchH-HHHHHHHHHHHhhcCceEEEEEeCCC
Confidence 33221 1234554443 333221 346777774332222111 01234555555555567899999863
No 360
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=27.68 E-value=1.7e+02 Score=25.81 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=14.0
Q ss_pred hHHHHhhcCceeeEEEe
Q 015435 139 HPKVFTLAGLSVKTYRY 155 (407)
Q Consensus 139 ~~~~~~~~G~~~~~v~~ 155 (407)
....++.+|++++.++-
T Consensus 118 k~~~~~~~GA~v~~~~~ 134 (341)
T 1f2d_A 118 NIELSRIMGADVRVIED 134 (341)
T ss_dssp HHHHHHHTTCEEEECCC
T ss_pred cHHHHHhCCCEEEEeCC
Confidence 66788899999998864
No 361
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=27.67 E-value=2.3e+02 Score=24.00 Aligned_cols=100 Identities=10% Similarity=0.006 Sum_probs=49.3
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH---HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK---VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 175 (407)
..+++ ..|++.++-..+ ...+...|-+|++..-.-..... .+...|.++..+..+ - -|.+++++.+.+.
T Consensus 32 gk~~l--VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-l----~d~~~v~~~~~~~ 103 (276)
T 3r1i_A 32 GKRAL--ITGASTGIGKKV-ALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCD-V----TQPDQVRGMLDQM 103 (276)
T ss_dssp TCEEE--EESTTSHHHHHH-HHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECC-T----TCHHHHHHHHHHH
T ss_pred CCEEE--EeCCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcC-C----CCHHHHHHHHHHH
Confidence 34566 667777777663 23335578888776543222222 223446666666651 2 3556666555421
Q ss_pred ---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 176 ---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 176 ---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
-...-++|++-...+.+. -.+.++++++.+.
T Consensus 104 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 139 (276)
T 3r1i_A 104 TGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDT 139 (276)
T ss_dssp HHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 112333442332222222 2456677665443
No 362
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=27.51 E-value=2e+02 Score=24.08 Aligned_cols=54 Identities=9% Similarity=-0.048 Sum_probs=30.0
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh----hcCceeeEEEe
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT----LAGLSVKTYRY 155 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~----~~G~~~~~v~~ 155 (407)
...++ ..|++.++-..+ ...+...|-+|++..-.-.......+ ..|.++..+..
T Consensus 20 ~k~vl--VTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~ 77 (266)
T 4egf_A 20 GKRAL--ITGATKGIGADI-ARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAI 77 (266)
T ss_dssp TCEEE--ETTTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred CCEEE--EeCCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 34666 677778877763 23335578888776532222222221 14667777766
No 363
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=26.77 E-value=1.5e+02 Score=25.18 Aligned_cols=100 Identities=11% Similarity=0.049 Sum_probs=49.1
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH---HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK---VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 175 (407)
..+++ ..|++.++-..+ ...+...|-+|++..-.-..... .++..|.++..+..+ - -|.+++++.+.+.
T Consensus 24 ~k~~l--VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D-v----~d~~~v~~~~~~~ 95 (279)
T 3sju_A 24 PQTAF--VTGVSSGIGLAV-ARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCD-V----TSTDEVHAAVAAA 95 (279)
T ss_dssp -CEEE--EESTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECC-T----TCHHHHHHHHHHH
T ss_pred CCEEE--EeCCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECC-C----CCHHHHHHHHHHH
Confidence 34566 667777777663 22335578888776533221222 222346677666651 2 3566666555421
Q ss_pred ---CCCcEEEEecCCCCCCCCC--CCHHHHHHHHHH
Q 015435 176 ---PSGAIVLLHACAHNPTGVD--PTLEQWEQIRQL 206 (407)
Q Consensus 176 ---~~~~~v~i~~~p~NPtG~~--~~~~~l~~i~~~ 206 (407)
-...-++|++-...+.+.. .+.+++++..+.
T Consensus 96 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~v 131 (279)
T 3sju_A 96 VERFGPIGILVNSAGRNGGGETADLDDALWADVLDT 131 (279)
T ss_dssp HHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 1123345533332222222 456667665443
No 364
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=26.64 E-value=2.7e+02 Score=24.47 Aligned_cols=106 Identities=10% Similarity=-0.001 Sum_probs=56.2
Q ss_pred CCCCceEEeecCCcccHHHHHHHHHHhhcCCC--eEEecC--CCCCChHHHHh--hcCceeeEEEeecCCCCCcChhhHH
Q 015435 96 IKDNRVTTVQCLSGTGSLRVGAEFLARHYHQL--TIYIPQ--PTWGNHPKVFT--LAGLSVKTYRYYDPATRGLNFQGLL 169 (407)
Q Consensus 96 ~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd--~Vi~~~--p~y~~~~~~~~--~~G~~~~~v~~~~~~~~~~d~~~l~ 169 (407)
+++...++ |.|.++....++ ......|. +|++.+ |.+.+..-+.+ ..|+.+..++- ..+-
T Consensus 119 I~~g~~IL--Th~~S~tv~~~l--~~A~~~gk~~~V~v~EsrP~~qG~~la~~L~~~gI~vtli~D----------sa~~ 184 (315)
T 3ecs_A 119 IKDGATIL--THAYSRVVLRVL--EAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLD----------AAVG 184 (315)
T ss_dssp CCTTEEEE--ECSCCHHHHHHH--HHHHTTTCCEEEEEECCTTTTHHHHHHHHHHTTTCCEEEECG----------GGHH
T ss_pred cCCCCEEE--EcCCcHHHHHHH--HHHHHcCCeEEEEEecCCCcchHHHHHHHHHHcCCCEEEEeh----------hHHH
Confidence 44577888 888887666653 33344453 576665 55544433222 55777666532 1222
Q ss_pred HHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecc
Q 015435 170 EDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDS 218 (407)
Q Consensus 170 ~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~ 218 (407)
..+. +...+++=...-...|.+.++-=--.++-+|+.+|+.+++=.
T Consensus 185 ~~m~---~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~a 230 (315)
T 3ecs_A 185 YIME---KADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVA 230 (315)
T ss_dssp HHGG---GCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEEC
T ss_pred HHHH---hCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEEe
Confidence 3333 233444422222333444444333567778899998777643
No 365
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Probab=26.63 E-value=41 Score=33.52 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHcCceeeeccccc
Q 015435 195 PTLEQWEQIRQLMRSKGLLPFFDSAYQ 221 (407)
Q Consensus 195 ~~~~~l~~i~~~~~~~~~~li~D~~y~ 221 (407)
-+.++++++++.|+++|+.||.|-++.
T Consensus 318 Gt~edfk~LV~~aH~~GI~VilD~V~N 344 (695)
T 3zss_A 318 GTLDDFDHFVTEAGKLGLEIALDFALQ 344 (695)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCE
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeecc
Confidence 347999999999999999999999975
No 366
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=26.43 E-value=1.3e+02 Score=25.50 Aligned_cols=100 Identities=9% Similarity=0.031 Sum_probs=49.5
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCC-C---hHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHc
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWG-N---HPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRA 174 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~-~---~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~ 174 (407)
..+++ ..|++.++-..+ ...+...|-+|++..-.-. . ....++..|.++..+..+ - -|.+++++.+.+
T Consensus 28 ~k~vl--VTGas~gIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~----~d~~~v~~~~~~ 99 (269)
T 4dmm_A 28 DRIAL--VTGASRGIGRAI-ALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKAD-V----SQESEVEALFAA 99 (269)
T ss_dssp TCEEE--ETTCSSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECC-T----TSHHHHHHHHHH
T ss_pred CCEEE--EECCCCHHHHHH-HHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECC-C----CCHHHHHHHHHH
Confidence 45666 677778777763 2233557888876532111 1 112233456677777652 2 355666655542
Q ss_pred C---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 175 A---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 175 ~---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
. -...-++|++-...+.+. -.+.+++++..+.
T Consensus 100 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~v 136 (269)
T 4dmm_A 100 VIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDL 136 (269)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 1 112334552332222222 2456777766544
No 367
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=26.41 E-value=2.3e+02 Score=24.81 Aligned_cols=80 Identities=11% Similarity=0.163 Sum_probs=42.9
Q ss_pred cChhhHHHHHHcCCCCcEEEEecCCCCCCCCC--CCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435 163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVD--PTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA 240 (407)
Q Consensus 163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~--~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~ 240 (407)
+-...|+.++. ....++.|++.|..|.|.- +.... +.++|.++|+.++.-+.+ . +..-...+..
T Consensus 13 fa~~~L~~L~~--~~~~v~~Vvt~pd~~~grg~~l~~~~---v~~~A~~~gIpv~~~~~~-----~----~~~~~~~l~~ 78 (314)
T 3tqq_A 13 FAVPTLRALID--SSHRVLAVYTQPDRPSGRGQKIMESP---VKEIARQNEIPIIQPFSL-----R----DEVEQEKLIA 78 (314)
T ss_dssp GGHHHHHHHHH--SSSEEEEEECCCC----------CCH---HHHHHHHTTCCEECCSCS-----S----SHHHHHHHHT
T ss_pred HHHHHHHHHHH--CCCeEEEEEeCCCCccccCCccCCCH---HHHHHHHcCCCEECcccC-----C----CHHHHHHHHh
Confidence 55566777776 3345666668899998742 22223 445599999986532211 1 1122233445
Q ss_pred cCCcEEEEEecCcccc
Q 015435 241 DGGECLVAQSYAKNMG 256 (407)
Q Consensus 241 ~~~~~i~~~s~sK~~~ 256 (407)
...+++++-++.+.+.
T Consensus 79 ~~~Dliv~~~~~~ilp 94 (314)
T 3tqq_A 79 MNADVMVVVAYGLILP 94 (314)
T ss_dssp TCCSEEEEESCCSCCC
T ss_pred cCCCEEEEcCcccccC
Confidence 5667888888887663
No 368
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=26.19 E-value=2e+02 Score=24.01 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=49.6
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH---HhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV---FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~---~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 175 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+-.-...... ++..+.++..+..+ - -|.+++++.+.+.
T Consensus 6 ~k~vl--VTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-v----~~~~~v~~~~~~~ 77 (257)
T 3imf_A 6 EKVVI--ITGGSSGMGKGM-ATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMD-V----RNTDDIQKMIEQI 77 (257)
T ss_dssp TCEEE--ETTTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECC-T----TCHHHHHHHHHHH
T ss_pred CCEEE--EECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcc-C----CCHHHHHHHHHHH
Confidence 34556 677777777663 223355788887764332222222 22345566666651 2 3556665554321
Q ss_pred ---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHHH
Q 015435 176 ---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQLM 207 (407)
Q Consensus 176 ---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~~ 207 (407)
-...-+++++-...+.+. -.+.+++++..+.-
T Consensus 78 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n 114 (257)
T 3imf_A 78 DEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIV 114 (257)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHH
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHH
Confidence 112334552332222222 25667777665543
No 369
>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A*
Probab=26.14 E-value=48 Score=33.84 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHcCceeeecccccccc
Q 015435 195 PTLEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 195 ~~~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
-+.++++++++.||++|+-||.|-++....
T Consensus 690 Gt~~df~~lv~~~H~~GI~VilD~V~NH~~ 719 (844)
T 3aie_A 690 GTADDLVKAIKALHSKGIKVMADWVPDQMY 719 (844)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEccCccc
Confidence 358999999999999999999999987665
No 370
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=26.08 E-value=1.7e+02 Score=24.38 Aligned_cols=100 Identities=11% Similarity=0.005 Sum_probs=50.1
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH---HHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK---VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 175 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+-.-..... .++..|.++..+..+ - -|.+.+++.+.+.
T Consensus 12 ~k~vl--VTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-v----~d~~~v~~~~~~~ 83 (256)
T 3gaf_A 12 DAVAI--VTGAAAGIGRAI-AGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECN-V----TDEQHREAVIKAA 83 (256)
T ss_dssp TCEEE--ECSCSSHHHHHH-HHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECC-T----TCHHHHHHHHHHH
T ss_pred CCEEE--EECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECC-C----CCHHHHHHHHHHH
Confidence 45666 777778877763 22334578888776533222222 223456677777662 2 3556655554321
Q ss_pred ---CCCcEEEEecCCCCCCCC-CCCHHHHHHHHHH
Q 015435 176 ---PSGAIVLLHACAHNPTGV-DPTLEQWEQIRQL 206 (407)
Q Consensus 176 ---~~~~~v~i~~~p~NPtG~-~~~~~~l~~i~~~ 206 (407)
-...-+++++-...+.+. -.+.+++++..+.
T Consensus 84 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~v 118 (256)
T 3gaf_A 84 LDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKL 118 (256)
T ss_dssp HHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHH
T ss_pred HHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHH
Confidence 112334552332222221 3566777666443
No 371
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=25.76 E-value=1.3e+02 Score=25.47 Aligned_cols=100 Identities=7% Similarity=-0.015 Sum_probs=50.3
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCC-CC---hHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHc
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTW-GN---HPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRA 174 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y-~~---~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~ 174 (407)
..+++ ..|++.++-..+ ...+...|-+|++..-.- .. ....++..|.++..+..+ - -|.+++++.+.+
T Consensus 18 ~k~~l--VTGas~gIG~ai-a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v----~~~~~v~~~~~~ 89 (270)
T 3is3_A 18 GKVAL--VTGSGRGIGAAV-AVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKAD-I----RQVPEIVKLFDQ 89 (270)
T ss_dssp TCEEE--ESCTTSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECC-T----TSHHHHHHHHHH
T ss_pred CCEEE--EECCCchHHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcC-C----CCHHHHHHHHHH
Confidence 45666 677777777763 223355788887643211 11 122233457777777662 2 356666655542
Q ss_pred C---CCCcEEEEecCCCCCCCCC--CCHHHHHHHHHH
Q 015435 175 A---PSGAIVLLHACAHNPTGVD--PTLEQWEQIRQL 206 (407)
Q Consensus 175 ~---~~~~~v~i~~~p~NPtG~~--~~~~~l~~i~~~ 206 (407)
. -...-++|++-...+.+.. .+.+++++..+.
T Consensus 90 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 126 (270)
T 3is3_A 90 AVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSL 126 (270)
T ss_dssp HHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 1 1123345523222222321 366777766543
No 372
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A*
Probab=25.68 E-value=72 Score=31.62 Aligned_cols=30 Identities=10% Similarity=0.265 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 196 TLEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 196 ~~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
+.++++++++.|+++|+.||+|-++.....
T Consensus 105 t~~d~~~lv~~~h~~gi~vi~D~V~NH~~~ 134 (669)
T 3k8k_A 105 TESDFDRLVTEAHNRGIKIYLDYVMNHTGT 134 (669)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEEET
T ss_pred CHHHHHHHHHHHHHcCCEEEEEECcccCCC
Confidence 399999999999999999999999766553
No 373
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=25.56 E-value=2.3e+02 Score=24.34 Aligned_cols=100 Identities=8% Similarity=0.070 Sum_probs=49.4
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCC-------C--CCh------HHHHhhcCceeeEEEeecCCCCCc
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPT-------W--GNH------PKVFTLAGLSVKTYRYYDPATRGL 163 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~-------y--~~~------~~~~~~~G~~~~~v~~~~~~~~~~ 163 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+-. . ... ...++..|.++..+..+ - -
T Consensus 28 gk~~l--VTGas~GIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v----~ 99 (299)
T 3t7c_A 28 GKVAF--ITGAARGQGRSH-AITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVD-V----R 99 (299)
T ss_dssp TCEEE--EESTTSHHHHHH-HHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECC-T----T
T ss_pred CCEEE--EECCCCHHHHHH-HHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECC-C----C
Confidence 34566 667777777763 23345578888775422 0 001 11223456677777662 2 3
Q ss_pred ChhhHHHHHHcC---CCCcEEEEecCCCCCCCC---CCCHHHHHHHHHH
Q 015435 164 NFQGLLEDLRAA---PSGAIVLLHACAHNPTGV---DPTLEQWEQIRQL 206 (407)
Q Consensus 164 d~~~l~~~i~~~---~~~~~v~i~~~p~NPtG~---~~~~~~l~~i~~~ 206 (407)
|.+++++.+.+. -...-++|++....+.+. -.+.+++++..+.
T Consensus 100 ~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~v 148 (299)
T 3t7c_A 100 DFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDV 148 (299)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHH
Confidence 556666555421 112334442332222222 2467777766543
No 374
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=25.43 E-value=49 Score=34.24 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccCC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFASG 226 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~~ 226 (407)
.++++++++.||++|+-||.|-+|.....+
T Consensus 531 ~~dfk~LV~~aH~~GI~VILDvV~NHt~~~ 560 (921)
T 2wan_A 531 ITELKQLIQSLHQQRIGVNMDVVYNHTFDV 560 (921)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCCSCS
T ss_pred HHHHHHHHHHHHHcCCEEEEEEcccccccc
Confidence 589999999999999999999999877654
No 375
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=25.29 E-value=2.5e+02 Score=23.37 Aligned_cols=100 Identities=10% Similarity=0.033 Sum_probs=49.7
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEec-CCCCCChHH---HHhhcCceeeEEEeecCCCCCcChhhHHHHHHc
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIP-QPTWGNHPK---VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRA 174 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~-~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~ 174 (407)
...++ ..|++.++-..+ ...+...|-+|++. ...-..... .++..|.++..+..+ - -|.+++++.+.+
T Consensus 4 ~k~vl--VTGas~gIG~ai-a~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-v----~~~~~v~~~~~~ 75 (258)
T 3oid_A 4 NKCAL--VTGSSRGVGKAA-AIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKAN-V----GQPAKIKEMFQQ 75 (258)
T ss_dssp CCEEE--ESSCSSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECC-T----TCHHHHHHHHHH
T ss_pred CCEEE--EecCCchHHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcC-C----CCHHHHHHHHHH
Confidence 44666 777888887763 22335578887764 322211111 223446677777652 2 356666655542
Q ss_pred C---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 175 A---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 175 ~---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
. -...-++|++-...+.+. -.+.+++++..+.
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~v 112 (258)
T 3oid_A 76 IDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNI 112 (258)
T ss_dssp HHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 1 112334553332222222 2556676666443
No 376
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=25.13 E-value=41 Score=23.67 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCceeeeccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSA 219 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~ 219 (407)
-.--.+|.++|+++|+.++.|-.
T Consensus 26 ~~~A~~I~e~A~e~gVPi~e~~~ 48 (93)
T 2vt1_B 26 NQCALAVRKYANEVGIPTVRDVK 48 (93)
T ss_dssp HHHHHHHHHHHHHTTCCEEECHH
T ss_pred cHHHHHHHHHHHHcCCCEEECHH
Confidence 55678899999999999999874
No 377
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=25.08 E-value=2.3e+02 Score=22.63 Aligned_cols=91 Identities=8% Similarity=0.004 Sum_probs=42.1
Q ss_pred cCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcC-hhhHHHHHHcCCCCcEEEEe
Q 015435 106 CLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLN-FQGLLEDLRAAPSGAIVLLH 184 (407)
Q Consensus 106 t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d-~~~l~~~i~~~~~~~~v~i~ 184 (407)
..|+++.+-..+ ...+...|-+|++..-.-... ....+..++..++ .| .+.+.+.+. +...++-
T Consensus 5 ItGatG~iG~~l-~~~L~~~g~~V~~~~R~~~~~---~~~~~~~~~~~D~-------~d~~~~~~~~~~---~~d~vi~- 69 (219)
T 3dqp_A 5 IVGSTGRVGKSL-LKSLSTTDYQIYAGARKVEQV---PQYNNVKAVHFDV-------DWTPEEMAKQLH---GMDAIIN- 69 (219)
T ss_dssp EESTTSHHHHHH-HHHHTTSSCEEEEEESSGGGS---CCCTTEEEEECCT-------TSCHHHHHTTTT---TCSEEEE-
T ss_pred EECCCCHHHHHH-HHHHHHCCCEEEEEECCccch---hhcCCceEEEecc-------cCCHHHHHHHHc---CCCEEEE-
Confidence 456677776653 223345777776654221100 0113333333322 35 677777765 3344333
Q ss_pred cCC-CCCCCCCCCHHHHHHHHHHHHHcC
Q 015435 185 ACA-HNPTGVDPTLEQWEQIRQLMRSKG 211 (407)
Q Consensus 185 ~~p-~NPtG~~~~~~~l~~i~~~~~~~~ 211 (407)
+.. ..+.-.-.+..-...+++.|++.+
T Consensus 70 ~ag~~~~~~~~~n~~~~~~l~~a~~~~~ 97 (219)
T 3dqp_A 70 VSGSGGKSLLKVDLYGAVKLMQAAEKAE 97 (219)
T ss_dssp CCCCTTSSCCCCCCHHHHHHHHHHHHTT
T ss_pred CCcCCCCCcEeEeHHHHHHHHHHHHHhC
Confidence 322 211111223344556666676655
No 378
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A
Probab=25.01 E-value=41 Score=29.88 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCceeeeccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSA 219 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~ 219 (407)
.+.++++++.|.++|+.+|+|--
T Consensus 104 ~~~ld~~v~~a~~~Gi~VilD~H 126 (327)
T 3pzt_A 104 KNKVKEAVEAAKELGIYVIIDWH 126 (327)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEec
Confidence 67899999999999999999974
No 379
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=24.96 E-value=44 Score=29.01 Aligned_cols=23 Identities=4% Similarity=0.260 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCceeeeccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSA 219 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~ 219 (407)
.+.++++++.|.++|+.+|+|-.
T Consensus 63 ~~~ld~~v~~a~~~Gi~Vild~H 85 (294)
T 2whl_A 63 IDTIREVIELAEQNKMVAVVEVH 85 (294)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEec
Confidence 78999999999999999999874
No 380
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=24.93 E-value=1.1e+02 Score=24.16 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=34.9
Q ss_pred CcChhhH-HHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeec
Q 015435 162 GLNFQGL-LEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFD 217 (407)
Q Consensus 162 ~~d~~~l-~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D 217 (407)
-+.++++ .+.+.+. +++++++ .| +...+..+++.+++++ ++.++.-
T Consensus 21 ~~~i~~a~a~lI~~A-kRPvIl~-------Gg-v~~~~A~~eL~~~ae~-~iPVvtT 67 (174)
T 1ytl_A 21 LLEKGKPVANMIKKA-KRPLLIV-------GP-DMTDEMFERVKKFVEK-DITVVAT 67 (174)
T ss_dssp ECCCHHHHHHHHHHC-SSEEEEE-------CS-CCCHHHHHHHHHHHTS-SSEEEEE
T ss_pred eccHHHHHHHHHHcC-CCCEEEE-------CC-CCCccHHHHHHHHHHc-CCCEEEc
Confidence 3467787 8888754 5788887 34 5557788999999999 9999954
No 381
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=24.64 E-value=1.9e+02 Score=25.22 Aligned_cols=101 Identities=13% Similarity=0.076 Sum_probs=50.2
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCC----------CCChH---HHHhhcCceeeEEEeecCCCCCcCh
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPT----------WGNHP---KVFTLAGLSVKTYRYYDPATRGLNF 165 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~----------y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~ 165 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+-. -.... ..+...|.++..+..+ --|.
T Consensus 27 gk~vl--VTGas~GIG~ai-a~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~d~ 98 (322)
T 3qlj_A 27 GRVVI--VTGAGGGIGRAH-ALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSN-----VADW 98 (322)
T ss_dssp TCEEE--ETTTTSHHHHHH-HHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCC-----TTSH
T ss_pred CCEEE--EECCCcHHHHHH-HHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECC-----CCCH
Confidence 45666 677778887763 22335578888876432 11111 2233456667666551 2356
Q ss_pred hhHHHHHHcC---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHHH
Q 015435 166 QGLLEDLRAA---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQLM 207 (407)
Q Consensus 166 ~~l~~~i~~~---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~~ 207 (407)
+++++.+.+. -...-++|++-.....+. -.+.+++++..+.-
T Consensus 99 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN 145 (322)
T 3qlj_A 99 DQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVH 145 (322)
T ss_dssp HHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHh
Confidence 6665555421 112334552222222221 24566777665543
No 382
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A*
Probab=24.62 E-value=60 Score=33.91 Aligned_cols=30 Identities=10% Similarity=-0.047 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHcCceeeecccccccc
Q 015435 195 PTLEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 195 ~~~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
-+.++++++++.||++|+-||.|-++-...
T Consensus 910 Gt~edfk~LV~alH~~GI~VIlDvV~NHta 939 (1108)
T 3ttq_A 910 GTDGDLRATIQALHHANMQVMADVVDNQVY 939 (1108)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 358999999999999999999999986554
No 383
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=24.56 E-value=1.2e+02 Score=25.29 Aligned_cols=31 Identities=0% Similarity=-0.114 Sum_probs=18.9
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecC
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQ 133 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~ 133 (407)
..++ ..|++.++-..+ ...+...|-+|++..
T Consensus 6 k~vl--VTGas~giG~~i-a~~l~~~G~~V~~~~ 36 (245)
T 1uls_A 6 KAVL--ITGAAHGIGRAT-LELFAKEGARLVACD 36 (245)
T ss_dssp CEEE--EESTTSHHHHHH-HHHHHHTTCEEEEEE
T ss_pred CEEE--EECCCCHHHHHH-HHHHHHCCCEEEEEe
Confidence 3455 567777777663 223345788887754
No 384
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=24.49 E-value=2.1e+02 Score=23.91 Aligned_cols=67 Identities=4% Similarity=-0.088 Sum_probs=36.8
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHH---HHhhcCceeeEEEeecCCCCCcChhhHHHHHH
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPK---VFTLAGLSVKTYRYYDPATRGLNFQGLLEDLR 173 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~ 173 (407)
+..++ ..|++.++...+ ...+...|-+|++..-.-..... .+...|.++..+.++ - -|.+.+.+.+.
T Consensus 29 ~k~vl--ITGas~gIG~~l-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-~----~~~~~v~~~~~ 98 (262)
T 3rkr_A 29 GQVAV--VTGASRGIGAAI-ARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACD-L----SHSDAIAAFAT 98 (262)
T ss_dssp TCEEE--ESSTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECC-T----TCHHHHHHHHH
T ss_pred CCEEE--EECCCChHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEec-C----CCHHHHHHHHH
Confidence 44666 677778877763 22335578888776533222222 223346677776652 2 35566665544
No 385
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=24.32 E-value=38 Score=30.37 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=35.0
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEe
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRY 155 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~ 155 (407)
.|+- +++|+.+..++. ..+.+.-.-.|++|.-.-..-...++.+|++++.++-
T Consensus 89 ~Vv~--aSsGN~g~alA~-~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 89 TLIE--PTSGNMGISMAF-MAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141 (344)
T ss_dssp EEEE--ECSSHHHHHHHH-HHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred EEEE--eCCcHHHHHHHH-HHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC
Confidence 4666 888899988884 2223332245667664444456677899999988854
No 386
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=24.32 E-value=2e+02 Score=24.15 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=34.2
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH----hhcCceeeEEEeecCCCCCcChhhHHHHHH
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF----TLAGLSVKTYRYYDPATRGLNFQGLLEDLR 173 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~ 173 (407)
.+++ ..|++.++-..+ ...+...|-+|++..-.-....... +..|.++..+.. |- -|.+++++.+.
T Consensus 22 k~~l--VTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~-Dl----~~~~~v~~~~~ 91 (267)
T 1vl8_A 22 RVAL--VTGGSRGLGFGI-AQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRC-DV----SNYEEVKKLLE 91 (267)
T ss_dssp CEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEEC-CT----TCHHHHHHHHH
T ss_pred CEEE--EECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEc-CC----CCHHHHHHHHH
Confidence 4555 567777777663 2233457888877643211111222 223666666655 11 35566665554
No 387
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=24.18 E-value=2e+02 Score=25.07 Aligned_cols=56 Identities=9% Similarity=0.058 Sum_probs=35.9
Q ss_pred CCCCcChhhHHHHHHcC--CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc---Cceeee
Q 015435 159 ATRGLNFQGLLEDLRAA--PSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK---GLLPFF 216 (407)
Q Consensus 159 ~~~~~d~~~l~~~i~~~--~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~---~~~li~ 216 (407)
+++.+|.+.+++.++.- .....+++. .++.-+..++.++.+++++.+.+. .+.+|.
T Consensus 25 ~dg~iD~~~l~~lv~~li~~Gv~Gl~v~--GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpVia 85 (303)
T 2wkj_A 25 QQQALDKASLRRLVQFNIQQGIDGLYVG--GSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIA 85 (303)
T ss_dssp TTSSBCHHHHHHHHHHHHHTTCSEEEES--STTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEEC--eeccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 34678988888876421 345565552 344445568888998888888763 355553
No 388
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Probab=23.88 E-value=2.9e+02 Score=22.86 Aligned_cols=66 Identities=15% Similarity=-0.016 Sum_probs=34.3
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC-hHHHHhh---c-CceeeEEEeecCCCCCcChhhHHHHHH
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN-HPKVFTL---A-GLSVKTYRYYDPATRGLNFQGLLEDLR 173 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~-~~~~~~~---~-G~~~~~v~~~~~~~~~~d~~~l~~~i~ 173 (407)
..++ ..|++.++-..+ ...+...|-+|++..-.-.. ....... . |.++..+.. | --|.+++++.+.
T Consensus 5 k~vl--VTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-D----~~~~~~v~~~~~ 75 (260)
T 1x1t_A 5 KVAV--VTGSTSGIGLGI-ATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGA-D----LSKGEAVRGLVD 75 (260)
T ss_dssp CEEE--ETTCSSHHHHHH-HHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECC-C----TTSHHHHHHHHH
T ss_pred CEEE--EeCCCcHHHHHH-HHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEEC-C----CCCHHHHHHHHH
Confidence 4555 667777777663 22334578888776533222 2222221 1 556666654 1 135666665554
No 389
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=23.72 E-value=1.2e+02 Score=26.99 Aligned_cols=79 Identities=13% Similarity=-0.014 Sum_probs=43.3
Q ss_pred hcCCCeEEecCCCCCC-------h---HHHHhhcCceeeEEEeecCCCC---CcC---hhhHHHHHHcCCCCcEEEEecC
Q 015435 123 HYHQLTIYIPQPTWGN-------H---PKVFTLAGLSVKTYRYYDPATR---GLN---FQGLLEDLRAAPSGAIVLLHAC 186 (407)
Q Consensus 123 ~~~gd~Vi~~~p~y~~-------~---~~~~~~~G~~~~~v~~~~~~~~---~~d---~~~l~~~i~~~~~~~~v~i~~~ 186 (407)
+++||+|-+..|+... + ...++..|.+++.-+....... +-| .++|.+++. .++.++|+. ..
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~-Dp~i~aI~~-~r 86 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFN-DSSVKAILT-VI 86 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHH-CTTEEEEEE-SC
T ss_pred CCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhh-CCCCCEEEE-cC
Confidence 5689999888887642 1 2245577988877654222111 122 445555565 245566655 55
Q ss_pred CCCCCCCCCCHHHHHHH
Q 015435 187 AHNPTGVDPTLEQWEQI 203 (407)
Q Consensus 187 p~NPtG~~~~~~~l~~i 203 (407)
...-+-.+++.=|.+.|
T Consensus 87 GG~g~~rlL~~LD~~~i 103 (327)
T 4h1h_A 87 GGFNSNQLLPYLDYDLI 103 (327)
T ss_dssp CCSCGGGGGGGCCHHHH
T ss_pred CchhHHHHhhhcchhhh
Confidence 55545445544344433
No 390
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=23.65 E-value=39 Score=23.98 Aligned_cols=23 Identities=9% Similarity=-0.077 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHcCceeeeccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSA 219 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~ 219 (407)
-.--++|.++|+++|+.++.|-.
T Consensus 41 ~~~A~~I~~~A~e~gVPi~e~~~ 63 (97)
T 3t7y_A 41 NLRAKRIIAEAEKYGVPIMRNVP 63 (97)
T ss_dssp HHHHHHHHHHHHHHTCCEEECHH
T ss_pred cHHHHHHHHHHHHcCCeEEECHH
Confidence 45678899999999999999875
No 391
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=23.63 E-value=3.3e+02 Score=22.87 Aligned_cols=99 Identities=9% Similarity=0.023 Sum_probs=48.5
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCC-------hH---HHHhhcCceeeEEEeecCCCCCcChhhH
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGN-------HP---KVFTLAGLSVKTYRYYDPATRGLNFQGL 168 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~-------~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l 168 (407)
..+++ ..|++.++-..+ .......|-+|++..-.-.. .. ..+...|.++..+..+ - -|.+++
T Consensus 6 ~k~~l--VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v----~~~~~v 77 (274)
T 3e03_A 6 GKTLF--ITGASRGIGLAI-ALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCD-I----REEDQV 77 (274)
T ss_dssp TCEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECC-T----TCHHHH
T ss_pred CcEEE--EECCCChHHHHH-HHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCC-C----CCHHHH
Confidence 34555 667777777663 22334578888776432211 12 2223447777777662 2 355666
Q ss_pred HHHHHcC---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHH
Q 015435 169 LEDLRAA---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQ 205 (407)
Q Consensus 169 ~~~i~~~---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~ 205 (407)
++.+.+. -...-++|++-.....+. -.+.+++++..+
T Consensus 78 ~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~ 119 (274)
T 3e03_A 78 RAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQ 119 (274)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHh
Confidence 5554321 112334552332222222 145666665543
No 392
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=23.42 E-value=1.4e+02 Score=24.31 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=44.4
Q ss_pred CeEEecCCCCCCh-------HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHH
Q 015435 127 LTIYIPQPTWGNH-------PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQ 199 (407)
Q Consensus 127 d~Vi~~~p~y~~~-------~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~ 199 (407)
.+|++..+.-..| ...++..|.+++.+.. ...++++.+.+.+. +..++.+ +.-..+ +...
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~------~vp~~~l~~~~~~~-~~d~v~l-S~~~~~-----~~~~ 155 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV------DIEPGKFVEAVKKY-QPDIVGM-SALLTT-----TMMN 155 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS------SBCHHHHHHHHHHH-CCSEEEE-ECCSGG-----GTHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC------CCCHHHHHHHHHHc-CCCEEEE-eccccc-----cHHH
Confidence 3566655433222 2345678999887743 36788888887643 3455555 332222 2568
Q ss_pred HHHHHHHHHHcC
Q 015435 200 WEQIRQLMRSKG 211 (407)
Q Consensus 200 l~~i~~~~~~~~ 211 (407)
++++++.+++.+
T Consensus 156 ~~~~i~~l~~~~ 167 (210)
T 1y80_A 156 MKSTIDALIAAG 167 (210)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC
Confidence 999998898865
No 393
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}
Probab=23.41 E-value=4.8e+02 Score=24.70 Aligned_cols=102 Identities=7% Similarity=-0.023 Sum_probs=55.0
Q ss_pred CCCCceEEeecCCcccHHHHHHHHHHhhcCCCe-EEec-CCCC-------------CC---hHHHHhhcCceeeEEEeec
Q 015435 96 IKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLT-IYIP-QPTW-------------GN---HPKVFTLAGLSVKTYRYYD 157 (407)
Q Consensus 96 ~~~~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~-Vi~~-~p~y-------------~~---~~~~~~~~G~~~~~v~~~~ 157 (407)
+.++.+++ ..||+++|...+ ...+...|-+ |++. .-.- .. ....++..|.++..+.+ |
T Consensus 248 ~~~~~~vL--ITGgsgGIG~~l-A~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~-D 323 (525)
T 3qp9_A 248 WQADGTVL--VTGAEEPAAAEA-ARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTC-D 323 (525)
T ss_dssp SCTTSEEE--ESSTTSHHHHHH-HHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEEC-C
T ss_pred ecCCCEEE--EECCCCcHHHHH-HHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEEC-C
Confidence 45567888 888899888774 1222345654 5544 3221 11 12234456888888877 2
Q ss_pred CCCCCcChhhHHHHHHcCC--CCcEEEEecCCCCCCCCC--CCHHHHHHHHH
Q 015435 158 PATRGLNFQGLLEDLRAAP--SGAIVLLHACAHNPTGVD--PTLEQWEQIRQ 205 (407)
Q Consensus 158 ~~~~~~d~~~l~~~i~~~~--~~~~v~i~~~p~NPtG~~--~~~~~l~~i~~ 205 (407)
- -|.+++.+.+.+.. ...-++|++-.....+.+ .+.+++++..+
T Consensus 324 v----td~~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~ 371 (525)
T 3qp9_A 324 L----TDAEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVT 371 (525)
T ss_dssp T----TSHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHH
T ss_pred C----CCHHHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHH
Confidence 2 47788888877432 223445533322222322 45666666544
No 394
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A
Probab=23.30 E-value=47 Score=29.05 Aligned_cols=24 Identities=8% Similarity=-0.007 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHcCceeeecccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAY 220 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y 220 (407)
.+.++++++.|.++|+.+|+|-..
T Consensus 79 ~~~ld~~v~~a~~~Gi~Vild~H~ 102 (303)
T 7a3h_A 79 KEKVKEAVEAAIDLDIYVIIDWHI 102 (303)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEecc
Confidence 678999999999999999999853
No 395
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=23.26 E-value=3.2e+02 Score=22.66 Aligned_cols=100 Identities=11% Similarity=0.046 Sum_probs=48.7
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEec-CCCCCChH---HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHc
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIP-QPTWGNHP---KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRA 174 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~-~p~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~ 174 (407)
...++ ..|++.++-..+ ...+...|-+|++. ...-.... ..++..|.++..+..+ - -|.+++++.+.+
T Consensus 8 ~k~vl--VTGas~GIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v----~~~~~v~~~~~~ 79 (259)
T 3edm_A 8 NRTIV--VAGAGRDIGRAC-AIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKAD-L----TNAAEVEAAISA 79 (259)
T ss_dssp TCEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECC-T----TCHHHHHHHHHH
T ss_pred CCEEE--EECCCchHHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcC-C----CCHHHHHHHHHH
Confidence 34555 667777777653 23335578888775 33222122 2223446666666651 2 355666655542
Q ss_pred C---CCCcEEEEecCCCC-CCCC--CCCHHHHHHHHHH
Q 015435 175 A---PSGAIVLLHACAHN-PTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 175 ~---~~~~~v~i~~~p~N-PtG~--~~~~~~l~~i~~~ 206 (407)
. -...-+++++.... +.+. -.+.+++++..+.
T Consensus 80 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~v 117 (259)
T 3edm_A 80 AADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDV 117 (259)
T ss_dssp HHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHH
Confidence 1 12334455232222 2222 2556666665443
No 396
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=23.20 E-value=49 Score=29.70 Aligned_cols=24 Identities=4% Similarity=0.199 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCceeeecccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAY 220 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y 220 (407)
.+.++++++.|.++|+.+|+|-..
T Consensus 86 l~~ld~~v~~a~~~GiyVIlDlH~ 109 (345)
T 3jug_A 86 IDTVREVIELAEQNKMVAVVEVHD 109 (345)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECT
T ss_pred HHHHHHHHHHHHHCCCEEEEEecc
Confidence 789999999999999999999853
No 397
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=23.12 E-value=49 Score=28.80 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCceeeeccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSA 219 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~ 219 (407)
.+.+++++++|+++|++||.|-.
T Consensus 89 ~~~~d~~~~~a~~~Gi~vil~~~ 111 (351)
T 3vup_A 89 LDDMKDLLDTAKKYNILVFPCLW 111 (351)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEec
Confidence 45789999999999999998863
No 398
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=22.97 E-value=80 Score=27.18 Aligned_cols=79 Identities=9% Similarity=0.017 Sum_probs=0.0
Q ss_pred CCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHH
Q 015435 125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIR 204 (407)
Q Consensus 125 ~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~ 204 (407)
+|++|.+. +|.+........+.++..++. ++..+....++.+..+. ...++++ ||+.+--.-+.+|.
T Consensus 140 ~g~kV~vI--G~~P~i~~~l~~~~~v~V~d~-~p~~g~~p~~~~e~ll~---~aD~vii-------TGsTlvN~Ti~~lL 206 (270)
T 2h1q_A 140 KGKKVGVV--GHFPHLESLLEPICDLSILEW-SPEEGDYPLPASEFILP---ECDYVYI-------TCASVVDKTLPRLL 206 (270)
T ss_dssp TTSEEEEE--SCCTTHHHHHTTTSEEEEEES-SCCTTCEEGGGHHHHGG---GCSEEEE-------ETHHHHHTCHHHHH
T ss_pred CCCEEEEE--CCCHHHHHHHhCCCCEEEEEC-CCCCCCCChHHHHHHhh---cCCEEEE-------EeeeeecCCHHHHH
Q ss_pred HHHHHcCceeee
Q 015435 205 QLMRSKGLLPFF 216 (407)
Q Consensus 205 ~~~~~~~~~li~ 216 (407)
+.|+....++++
T Consensus 207 ~~~~~a~~vvl~ 218 (270)
T 2h1q_A 207 ELSRNARRITLV 218 (270)
T ss_dssp HHTTTSSEEEEE
T ss_pred HhCccCCeEEEE
No 399
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=22.69 E-value=2.8e+02 Score=23.32 Aligned_cols=100 Identities=10% Similarity=0.055 Sum_probs=49.0
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCC---------Ch------HHHHhhcCceeeEEEeecCCCCCc
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWG---------NH------PKVFTLAGLSVKTYRYYDPATRGL 163 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~---------~~------~~~~~~~G~~~~~v~~~~~~~~~~ 163 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+-.-. .. ...++..|.++..+..+ - -
T Consensus 10 ~k~~l--VTGas~gIG~a~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v----~ 81 (281)
T 3s55_A 10 GKTAL--ITGGARGMGRSH-AVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVD-V----K 81 (281)
T ss_dssp TCEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECC-T----T
T ss_pred CCEEE--EeCCCchHHHHH-HHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCC-C----C
Confidence 34556 667777777663 2233557888877543210 01 11223456677777662 2 3
Q ss_pred ChhhHHHHHHcC---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 164 NFQGLLEDLRAA---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 164 d~~~l~~~i~~~---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
|.+++++.+.+. -...-++|++-...+.+. -.+.+++++..+.
T Consensus 82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 129 (281)
T 3s55_A 82 DRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGT 129 (281)
T ss_dssp CHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 556666555421 112334553333222222 2566777665443
No 400
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=22.62 E-value=42 Score=23.87 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCceeeeccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSA 219 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~ 219 (407)
-.--.+|.++|+++|+.++.|-.
T Consensus 26 ~~~A~~I~e~A~e~gVPi~e~~~ 48 (98)
T 3c01_E 26 NQRALAVRAYAEKVGVPVIVDIK 48 (98)
T ss_dssp HHHHHHHHHHHHHHTCCEEECHH
T ss_pred cHHHHHHHHHHHHcCCCeecCHH
Confidence 45678899999999999999874
No 401
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Probab=22.59 E-value=3e+02 Score=24.09 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=13.8
Q ss_pred hHHHHhhcCceeeEEEe
Q 015435 139 HPKVFTLAGLSVKTYRY 155 (407)
Q Consensus 139 ~~~~~~~~G~~~~~v~~ 155 (407)
....++.+|++++.++-
T Consensus 115 k~~~~~~~GA~V~~~~~ 131 (338)
T 1tzj_A 115 NIQMSRILGADVRLVPD 131 (338)
T ss_dssp HHHHHHHTTCEEEECCC
T ss_pred cHHHHHhCCCEEEEeCC
Confidence 56788899999988754
No 402
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=22.45 E-value=2.1e+02 Score=23.76 Aligned_cols=66 Identities=8% Similarity=-0.072 Sum_probs=33.6
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHH
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLR 173 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~ 173 (407)
..++ ..|++..+-..+ ...+...|-+|++.+-.-.......+..|.++..+.. |- -|.+++++.+.
T Consensus 6 k~vl--VTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-D~----~~~~~~~~~~~ 71 (254)
T 1hdc_A 6 KTVI--ITGGARGLGAEA-ARQAVAAGARVVLADVLDEEGAATARELGDAARYQHL-DV----TIEEDWQRVVA 71 (254)
T ss_dssp SEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEEC-CT----TCHHHHHHHHH
T ss_pred CEEE--EECCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEe-cC----CCHHHHHHHHH
Confidence 3455 567777777663 2233457888877543211122223333555655555 11 35566665543
No 403
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=22.39 E-value=2.8e+02 Score=23.99 Aligned_cols=100 Identities=12% Similarity=0.058 Sum_probs=49.4
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCC-------CCC--h------HHHHhhcCceeeEEEeecCCCCCc
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPT-------WGN--H------PKVFTLAGLSVKTYRYYDPATRGL 163 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~-------y~~--~------~~~~~~~G~~~~~v~~~~~~~~~~ 163 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+-. +.. . ...+...|.++..+..+ - -
T Consensus 46 gk~~l--VTGas~GIG~ai-a~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v----~ 117 (317)
T 3oec_A 46 GKVAF--ITGAARGQGRTH-AVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQAD-V----R 117 (317)
T ss_dssp TCEEE--ESSCSSHHHHHH-HHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECC-T----T
T ss_pred CCEEE--EeCCCcHHHHHH-HHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECC-C----C
Confidence 45666 777888887763 23335578888775322 110 1 11223456677776652 2 3
Q ss_pred ChhhHHHHHHcC---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 164 NFQGLLEDLRAA---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 164 d~~~l~~~i~~~---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
|.+++++.+.+. -...-++|++-...+.+. -.+.++++++.+.
T Consensus 118 d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~v 165 (317)
T 3oec_A 118 DLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQT 165 (317)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 556665554421 112334452332222222 2466777666443
No 404
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=22.36 E-value=1.1e+02 Score=26.51 Aligned_cols=48 Identities=4% Similarity=0.054 Sum_probs=32.3
Q ss_pred ChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeecccc
Q 015435 164 NFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAY 220 (407)
Q Consensus 164 d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~y 220 (407)
-++.++++++ ...+.+++. .+|. +.++.+++.+.|+++|+.++-..+.
T Consensus 83 ~~~~v~ea~~--~Gi~~vVi~-----t~G~--~~~~~~~l~~~A~~~gi~viGPNc~ 130 (294)
T 2yv1_A 83 AKDAVFEAID--AGIELIVVI-----TEHI--PVHDTMEFVNYAEDVGVKIIGPNTP 130 (294)
T ss_dssp HHHHHHHHHH--TTCSEEEEC-----CSCC--CHHHHHHHHHHHHHHTCEEECSSCC
T ss_pred HHHHHHHHHH--CCCCEEEEE-----CCCC--CHHHHHHHHHHHHHcCCEEEcCCCc
Confidence 3455566665 456655552 2333 5678899999999999988877753
No 405
>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A*
Probab=22.31 E-value=58 Score=32.18 Aligned_cols=29 Identities=14% Similarity=0.349 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCceeeeccccccccC
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAYQGFAS 225 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y~~~~~ 225 (407)
.++++++++-|+++|+.||+|-++.....
T Consensus 160 ~~d~~~lv~~~h~~Gi~Vi~D~V~NH~s~ 188 (655)
T 3ucq_A 160 MDDLSALARALRGRGISLVLDLVLNHVAR 188 (655)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEEET
T ss_pred HHHHHHHHHHHHHCCCEEEEEeecccccc
Confidence 89999999999999999999999765553
No 406
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=22.19 E-value=2.9e+02 Score=23.41 Aligned_cols=99 Identities=12% Similarity=0.023 Sum_probs=47.7
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCC-ChHHHHh----hcCceeeEEEeecCCCCCcChhhHHHHHHc
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWG-NHPKVFT----LAGLSVKTYRYYDPATRGLNFQGLLEDLRA 174 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~-~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~ 174 (407)
..++ ..|++.++-..+ ...+...|-+|++.+-.-. ....... ..+.++..+..+ --|.+++++.+.+
T Consensus 26 k~~l--VTGas~GIG~~i-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~d~~~v~~~~~~ 97 (281)
T 3v2h_A 26 KTAV--ITGSTSGIGLAI-ARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPAD-----MTKPSEIADMMAM 97 (281)
T ss_dssp CEEE--EETCSSHHHHHH-HHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCC-----TTCHHHHHHHHHH
T ss_pred CEEE--EeCCCcHHHHHH-HHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCC-----CCCHHHHHHHHHH
Confidence 4556 667777777663 2333567888887653211 1111111 125566666551 2355666655542
Q ss_pred ---CCCCcEEEEecCCCCCCCCC--CCHHHHHHHHHH
Q 015435 175 ---APSGAIVLLHACAHNPTGVD--PTLEQWEQIRQL 206 (407)
Q Consensus 175 ---~~~~~~v~i~~~p~NPtG~~--~~~~~l~~i~~~ 206 (407)
.-...-++|++-...+.+.. .+.+++++..+.
T Consensus 98 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 134 (281)
T 3v2h_A 98 VADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAV 134 (281)
T ss_dssp HHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 11123345523333222321 366777666444
No 407
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A*
Probab=22.01 E-value=57 Score=28.18 Aligned_cols=24 Identities=4% Similarity=0.122 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCceeeecccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAY 220 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y 220 (407)
.+.++++++.|.++|+.+|+|-..
T Consensus 78 ~~~ld~~v~~a~~~Gi~vild~h~ 101 (293)
T 1tvn_A 78 MSRLDTVVNAAIAEDMYVIIDFHS 101 (293)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCC
Confidence 467889999999999999998753
No 408
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=21.95 E-value=2.4e+02 Score=23.75 Aligned_cols=100 Identities=10% Similarity=0.076 Sum_probs=49.8
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChH---HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHP---KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 175 (407)
..+++ ..|++.++-..+ ...+...|-+|++..-.-.... ..++..|.++..+.. |- -|.+++++.+.+.
T Consensus 28 ~k~~l--VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-Dv----~d~~~v~~~~~~~ 99 (270)
T 3ftp_A 28 KQVAI--VTGASRGIGRAI-ALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVL-NV----NDATAVDALVEST 99 (270)
T ss_dssp TCEEE--ETTCSSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEEC-CT----TCHHHHHHHHHHH
T ss_pred CCEEE--EECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEE-eC----CCHHHHHHHHHHH
Confidence 45666 777888887763 2233557888877653322111 122344666666655 11 3556665555421
Q ss_pred ---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 176 ---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 176 ---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
-...-++|++-...+.+. -.+.+++++..+.
T Consensus 100 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~v 135 (270)
T 3ftp_A 100 LKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDT 135 (270)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 112334552332222222 2566777766544
No 409
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=21.73 E-value=2.5e+02 Score=23.77 Aligned_cols=100 Identities=8% Similarity=-0.014 Sum_probs=49.1
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHH---hhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVF---TLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 175 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+-.-....... ...|.++..+..+ --|.+.+++.+.+.
T Consensus 8 gk~vl--VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~ 79 (280)
T 3tox_A 8 GKIAI--VTGASSGIGRAA-ALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGD-----VGDEALHEALVELA 79 (280)
T ss_dssp TCEEE--ESSTTSHHHHHH-HHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCC-----TTCHHHHHHHHHHH
T ss_pred CCEEE--EECCCcHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECC-----CCCHHHHHHHHHHH
Confidence 34666 677778877763 2233557888888754322222222 2335566666541 23555665554321
Q ss_pred ---CCCcEEEEecCCCC-CCCC--CCCHHHHHHHHHH
Q 015435 176 ---PSGAIVLLHACAHN-PTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 176 ---~~~~~v~i~~~p~N-PtG~--~~~~~~l~~i~~~ 206 (407)
-...-++|++-... +.+. -.+.+++++..++
T Consensus 80 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~v 116 (280)
T 3tox_A 80 VRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDT 116 (280)
T ss_dssp HHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHH
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHH
Confidence 11233455222211 2222 2566777766544
No 410
>3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A
Probab=21.69 E-value=65 Score=33.65 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHcCceeeecccccccc
Q 015435 196 TLEQWEQIRQLMRSKGLLPFFDSAYQGFA 224 (407)
Q Consensus 196 ~~~~l~~i~~~~~~~~~~li~D~~y~~~~ 224 (407)
+.++++++++.||++|+-||.|-|+-...
T Consensus 744 t~~efk~lV~alH~~GI~VIlDvV~NHta 772 (1039)
T 3klk_A 744 SDEDLRNALQALHKAGLQAIADWVPDQIY 772 (1039)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccCCcC
Confidence 47899999999999999999999986655
No 411
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=21.54 E-value=1.3e+02 Score=22.48 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=37.0
Q ss_pred HHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015435 141 KVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKG 211 (407)
Q Consensus 141 ~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~ 211 (407)
..++..|.+++++-. ...++++.+++.+. +..++.+ +.-..++ ...++++.+.+++.+
T Consensus 25 ~~l~~~G~~Vi~lG~------~~p~e~~v~~a~~~-~~d~v~l-S~~~~~~-----~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 25 HAFTNAGFNVVNIGV------LSPQELFIKAAIET-KADAILV-SSLYGQG-----EIDCKGLRQKCDEAG 82 (137)
T ss_dssp HHHHHTTCEEEEEEE------EECHHHHHHHHHHH-TCSEEEE-EECSSTH-----HHHHTTHHHHHHHTT
T ss_pred HHHHHCCCEEEECCC------CCCHHHHHHHHHhc-CCCEEEE-EecCcCc-----HHHHHHHHHHHHhcC
Confidence 356688999987744 25778888777643 3445455 3323222 567888888888765
No 412
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=21.46 E-value=2.9e+02 Score=24.38 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=39.4
Q ss_pred CCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCcee
Q 015435 135 TWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLP 214 (407)
Q Consensus 135 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l 214 (407)
.|..+...+......++.+-. +. ....+-..+++. . .+-|++ ..|.+ .+.++.++|.++|+++|+.+
T Consensus 55 ~~~~~~~ll~~~~vD~V~i~t--p~--~~H~~~~~~al~--a-GkhV~~----EKPla--~~~~e~~~l~~~a~~~g~~~ 121 (352)
T 3kux_A 55 VVSDPQMLFNDPSIDLIVIPT--PN--DTHFPLAQSALA--A-GKHVVV----DKPFT--VTLSQANALKEHADDAGLLL 121 (352)
T ss_dssp EESCHHHHHHCSSCCEEEECS--CT--TTHHHHHHHHHH--T-TCEEEE----CSSCC--SCHHHHHHHHHHHHHTTCCE
T ss_pred eECCHHHHhcCCCCCEEEEeC--Ch--HHHHHHHHHHHH--C-CCcEEE----ECCCc--CCHHHHHHHHHHHHHcCCeE
Confidence 345566666555566666544 21 234455555555 2 233444 34432 34778888888888888777
Q ss_pred eec
Q 015435 215 FFD 217 (407)
Q Consensus 215 i~D 217 (407)
.+-
T Consensus 122 ~v~ 124 (352)
T 3kux_A 122 SVF 124 (352)
T ss_dssp EEC
T ss_pred EEE
Confidence 653
No 413
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=21.33 E-value=2.6e+02 Score=22.99 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=46.8
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH---HhhcCceeeEEEeecCCCCCcChhhHHHHHHcC-
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV---FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA- 175 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~---~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~- 175 (407)
..++ ..|++.++-..+ ...+...|-+|++..-.-...... ++..|.++..+..+ - -|.+++++.+.+.
T Consensus 8 k~~l--VTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D-v----~~~~~~~~~~~~~~ 79 (247)
T 2jah_A 8 KVAL--ITGASSGIGEAT-ARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELD-V----ADRQGVDAAVASTV 79 (247)
T ss_dssp CEEE--EESCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECC-T----TCHHHHHHHHHHHH
T ss_pred CEEE--EECCCCHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECC-C----CCHHHHHHHHHHHH
Confidence 3555 567777777763 223345788877654221111111 12236566666551 2 3566666555421
Q ss_pred ---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 176 ---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 176 ---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
.+.. +++++-...+.+. -.+.++++++.+.
T Consensus 80 ~~~g~id-~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 114 (247)
T 2jah_A 80 EALGGLD-ILVNNAGIMLLGPVEDADTTDWTRMIDT 114 (247)
T ss_dssp HHHSCCS-EEEECCCCCCCCCSTTCCHHHHHHHHHH
T ss_pred HHcCCCC-EEEECCCCCCCCchhhCCHHHHHHHHHH
Confidence 2233 3442332222232 2456676665443
No 414
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=21.17 E-value=1.7e+02 Score=27.27 Aligned_cols=51 Identities=10% Similarity=-0.035 Sum_probs=36.5
Q ss_pred CCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCceeeeccc
Q 015435 160 TRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSA 219 (407)
Q Consensus 160 ~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D~~ 219 (407)
++.+|.-.+.++.. -.-.+++++.. .++.++++++.+.|++.|+.+++|-.
T Consensus 115 DFI~d~~Qi~ea~~--~GAD~ILLi~a-------~l~~~~l~~l~~~a~~lgm~~LvEvh 165 (452)
T 1pii_A 115 DFIIDPYQIYLARY--YQADACLLMLS-------VLDDDQYRQLAAVAHSLEMGVLTEVS 165 (452)
T ss_dssp SCCCSHHHHHHHHH--TTCSEEEEETT-------TCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred eccCCHHHHHHHHH--cCCCEEEEEcc-------cCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 36778877777554 33455555333 46678999999999999988888763
No 415
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=21.03 E-value=2.2e+02 Score=25.31 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=55.4
Q ss_pred CCceEEeecCCcccHHHHHHHHHHhh-cCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHH---
Q 015435 98 DNRVTTVQCLSGTGSLRVGAEFLARH-YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLR--- 173 (407)
Q Consensus 98 ~~~i~~~~t~g~t~a~~~~~~~~~~~-~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~--- 173 (407)
...++.+..+.|++=..++..+...+ ..|..|++.+.........++..|.....+.+..+. +.+++.+.+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~----~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPD----TGEQALEIADMLV 135 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCS----SHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCC----CHHHHHHHHHHHH
Confidence 45666654677766655554444333 356666665544332233455667654444332222 3444433322
Q ss_pred cCCCCcEEEEecCCCCCCC------CCCC----------HHHHHHHHHHHHHcCceeee
Q 015435 174 AAPSGAIVLLHACAHNPTG------VDPT----------LEQWEQIRQLMRSKGLLPFF 216 (407)
Q Consensus 174 ~~~~~~~v~i~~~p~NPtG------~~~~----------~~~l~~i~~~~~~~~~~li~ 216 (407)
......+++| -++..-.. ..-+ ...+.+|..+++++|+.+|+
T Consensus 136 ~~~~~~lIVI-Dsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~ 193 (349)
T 2zr9_A 136 RSGALDIIVI-DSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIF 193 (349)
T ss_dssp TTTCCSEEEE-ECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred hcCCCCEEEE-cChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 1233566666 44433221 0000 13346666667888865554
No 416
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=20.93 E-value=2.5e+02 Score=24.66 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=41.9
Q ss_pred cChhhHHHHHHcCCCCcEEEEecCCCCCCCC--CCCHHHHHHHHHHHHHcCceeeeccccccccCCCCCchhHHHHHHHH
Q 015435 163 LNFQGLLEDLRAAPSGAIVLLHACAHNPTGV--DPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVA 240 (407)
Q Consensus 163 ~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~~~~~~~~li~D~~y~~~~~~~~~~~~~~~~~~~~ 240 (407)
+-...|+.++. ....++.|+++|..|.|. .+....++ ++|+++|+.++.-+- + . +..-...+..
T Consensus 18 fa~~~L~~L~~--~~~~v~~Vvt~pd~p~grg~~~~~~~v~---~~A~~~gIpv~~~~~---~--~----~~~~~~~l~~ 83 (318)
T 3q0i_A 18 FAARHLAALLS--SEHEIIAVYTQPERPAGRGKKLTASPVK---TLALEHNVPVYQPEN---F--K----SDESKQQLAA 83 (318)
T ss_dssp HHHHHHHHHHT--SSSEEEEEECCCC---------CCCHHH---HHHHHTTCCEECCSC---S--C----SHHHHHHHHT
T ss_pred HHHHHHHHHHH--CCCcEEEEEcCCCCcccccccCCCCHHH---HHHHHcCCCEEccCc---C--C----CHHHHHHHHh
Confidence 33456666665 234566666889999864 22333444 459999998753221 1 1 1122233444
Q ss_pred cCCcEEEEEecCcccc
Q 015435 241 DGGECLVAQSYAKNMG 256 (407)
Q Consensus 241 ~~~~~i~~~s~sK~~~ 256 (407)
...+++++-++.+.+.
T Consensus 84 ~~~Dliv~~~y~~ilp 99 (318)
T 3q0i_A 84 LNADLMVVVAYGLLLP 99 (318)
T ss_dssp TCCSEEEESSCCSCCC
T ss_pred cCCCEEEEeCccccCC
Confidence 5567888888877663
No 417
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=20.82 E-value=2.8e+02 Score=24.24 Aligned_cols=98 Identities=12% Similarity=0.039 Sum_probs=47.9
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCC--CCCCh------HHHHhhcCceeeEEEeecCCCCCcChhhHHHH
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQP--TWGNH------PKVFTLAGLSVKTYRYYDPATRGLNFQGLLED 171 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p--~y~~~------~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 171 (407)
.+++ ..|++.++...+ ...+...|.+|++..- .-... ...+...|.++..+.++ - .|.+.+++.
T Consensus 6 k~vl--VTGas~GIG~ai-a~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~D-v----td~~~v~~~ 77 (324)
T 3u9l_A 6 KIIL--ITGASSGFGRLT-AEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELD-V----QSQVSVDRA 77 (324)
T ss_dssp CEEE--ESSCSSHHHHHH-HHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECC-T----TCHHHHHHH
T ss_pred CEEE--EECCCcHHHHHH-HHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEee-c----CCHHHHHHH
Confidence 4566 677788887763 2334568888876431 11111 11222346667666651 2 355666655
Q ss_pred HHcC---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHH
Q 015435 172 LRAA---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQ 205 (407)
Q Consensus 172 i~~~---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~ 205 (407)
+.+. -...-++|++-...+.|. -.+.++++++.+
T Consensus 78 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~ 116 (324)
T 3u9l_A 78 IDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYD 116 (324)
T ss_dssp HHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHH
Confidence 5421 112334552332222222 245666665544
No 418
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=20.75 E-value=2.6e+02 Score=23.49 Aligned_cols=97 Identities=9% Similarity=0.051 Sum_probs=47.1
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCC-------CC-C-h------HHHHhhcCceeeEEEeecCCCCCc
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPT-------WG-N-H------PKVFTLAGLSVKTYRYYDPATRGL 163 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~-------y~-~-~------~~~~~~~G~~~~~v~~~~~~~~~~ 163 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+-. |. . . ...+...|.++..+..+ - -
T Consensus 13 gk~vl--VTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~----~ 84 (278)
T 3sx2_A 13 GKVAF--ITGAARGQGRAH-AVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQAD-V----R 84 (278)
T ss_dssp TCEEE--EESTTSHHHHHH-HHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECC-T----T
T ss_pred CCEEE--EECCCChHHHHH-HHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCC-C----C
Confidence 34566 667777777663 23335578888765422 11 0 1 11223446677777662 2 3
Q ss_pred ChhhHHHHHHcC---CCCcEEEEecCCCCCCCCCCCHHHHHHHHH
Q 015435 164 NFQGLLEDLRAA---PSGAIVLLHACAHNPTGVDPTLEQWEQIRQ 205 (407)
Q Consensus 164 d~~~l~~~i~~~---~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~ 205 (407)
|.+++++.+.+. -...-++|++-...+.+. +.+++++..+
T Consensus 85 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~--~~~~~~~~~~ 127 (278)
T 3sx2_A 85 DRESLSAALQAGLDELGRLDIVVANAGIAPMSA--GDDGWHDVID 127 (278)
T ss_dssp CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCSS--THHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC--CHHHHHHHHH
Confidence 566666555421 112334553332222222 4566665544
No 419
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*
Probab=20.72 E-value=58 Score=29.31 Aligned_cols=24 Identities=8% Similarity=-0.097 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCceeeecccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSAY 220 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~y 220 (407)
.+.++++++.|.++|+.+|+|-..
T Consensus 89 l~~ld~~v~~a~~~Gi~VIld~H~ 112 (364)
T 1g01_A 89 KDLVYEGIELAFEHDMYVIVDWHV 112 (364)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEecc
Confidence 478999999999999999999864
No 420
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=20.68 E-value=1.8e+02 Score=23.11 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=40.5
Q ss_pred HHHhhcCceeeEEEeecCCCC-CcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCcee
Q 015435 141 KVFTLAGLSVKTYRYYDPATR-GLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLP 214 (407)
Q Consensus 141 ~~~~~~G~~~~~v~~~~~~~~-~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l 214 (407)
..++..|..++.+.++ ..++ ..+.+.+.+.+.......+++++..+ + -+.+.+.+|++..++.|..+
T Consensus 112 ~~~~~~G~~~v~w~~d-~~Dw~~~~~~~i~~~~~~~~~g~IiL~Hd~~--~----~t~~al~~ii~~l~~~Gy~~ 179 (195)
T 2cc0_A 112 SVEAKYGLTEVIWDVD-SQDWNNASTDAIVQAVSRLGNGQVILMHDWP--A----NTLAAIPRIAQTLAGKGLCS 179 (195)
T ss_dssp HHHHHTTCEECCCSEE-CCGGGTCCHHHHHHHHHTCCTTCEEEEESSC--H----HHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHCCCeEEEeccC-CCccCCCCHHHHHHHHhCcCcCeEEEECCCc--h----hHHHHHHHHHHHHHHCCCEE
Confidence 3445667777655552 2222 34667777777644445666665332 1 13678999999999998433
No 421
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=20.67 E-value=1.8e+02 Score=26.01 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=56.4
Q ss_pred CCceEEeecCCcccHHHHHHHHHHhh-cCCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHH---
Q 015435 98 DNRVTTVQCLSGTGSLRVGAEFLARH-YHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLR--- 173 (407)
Q Consensus 98 ~~~i~~~~t~g~t~a~~~~~~~~~~~-~~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~--- 173 (407)
...++++...+|++=..++..+...+ ..|..|++.+.....-...+...|.....+.+.++. +.+.+.+.+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~----~~e~~~~~~~~l~ 137 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD----TGEQALEICDALA 137 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCS----SHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCC----CHHHHHHHHHHHH
Confidence 45666655666666666655444333 356677666654332233455666654433332222 3344433332
Q ss_pred cCCCCcEEEEecCCCCCCC------CCCC----------HHHHHHHHHHHHHcCceeee
Q 015435 174 AAPSGAIVLLHACAHNPTG------VDPT----------LEQWEQIRQLMRSKGLLPFF 216 (407)
Q Consensus 174 ~~~~~~~v~i~~~p~NPtG------~~~~----------~~~l~~i~~~~~~~~~~li~ 216 (407)
+.....+++| -+...-.. ..-+ ...+.+|..+++++|+.+|+
T Consensus 138 ~~~~~~lVVI-Dsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~ 195 (356)
T 1u94_A 138 RSGAVDVIVV-DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIF 195 (356)
T ss_dssp HHTCCSEEEE-ECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred hccCCCEEEE-cCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 1134566666 44332221 0000 12356677778899976654
No 422
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=20.64 E-value=2.8e+02 Score=23.45 Aligned_cols=32 Identities=6% Similarity=-0.065 Sum_probs=19.8
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQ 133 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~ 133 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+
T Consensus 11 ~k~~l--VTGas~gIG~ai-a~~la~~G~~V~~~~ 42 (286)
T 3uve_A 11 GKVAF--VTGAARGQGRSH-AVRLAQEGADIIAVD 42 (286)
T ss_dssp TCEEE--EESTTSHHHHHH-HHHHHHTTCEEEEEE
T ss_pred CCEEE--EeCCCchHHHHH-HHHHHHCCCeEEEEe
Confidence 34566 667777777663 233355788887753
No 423
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=20.62 E-value=2.8e+02 Score=20.92 Aligned_cols=83 Identities=5% Similarity=0.076 Sum_probs=47.9
Q ss_pred CCCeEEecCCCCCChHHHHhhcCceeeEEEeecCCCCC-cChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHH
Q 015435 125 HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRG-LNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQI 203 (407)
Q Consensus 125 ~gd~Vi~~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~-~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i 203 (407)
-|=+++... +....++..|+.+..+.-. .+++. -+...+.+.+. .+..-++| +.| ++.--+..|-..|
T Consensus 49 lGf~i~AT~----GTa~~L~~~Gi~v~~v~k~-~egg~~~~~~~i~d~i~--~g~i~lVI-nt~---~~~~~~~~d~~~i 117 (143)
T 2yvq_A 49 EGFKLFATE----ATSDWLNANNVPATPVAWP-SQEGQNPSLSSIRKLIR--DGSIDLVI-NLP---NNNTKFVHDNYVI 117 (143)
T ss_dssp TTCEEEEEH----HHHHHHHHTTCCCEEECCG-GGC-----CBCHHHHHH--TTSCCEEE-ECC---CCCGGGHHHHHHH
T ss_pred CCCEEEECc----hHHHHHHHcCCeEEEEEec-cCCCcccccccHHHHHH--CCCceEEE-ECC---CCCCcCCccHHHH
Confidence 566666654 2356677889988888542 11101 01123666666 33333344 333 2322236788999
Q ss_pred HHHHHHcCceeeecc
Q 015435 204 RQLMRSKGLLPFFDS 218 (407)
Q Consensus 204 ~~~~~~~~~~li~D~ 218 (407)
...|-+|++.++..-
T Consensus 118 RR~Av~~~IP~~T~~ 132 (143)
T 2yvq_A 118 RRTAVDSGIPLLTNF 132 (143)
T ss_dssp HHHHHHTTCCEECSH
T ss_pred HHHHHHhCCCeEcCH
Confidence 999999999887543
No 424
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=20.62 E-value=2.1e+02 Score=24.61 Aligned_cols=99 Identities=9% Similarity=0.121 Sum_probs=48.6
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHH---HhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKV---FTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA 175 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~---~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 175 (407)
...++ ..|++.++...+ ...+...|-+|++.+-.-...... ++..|.++..+.. |- -|.+.+++.+.+.
T Consensus 31 gk~vl--VTGas~gIG~~l-a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-Dv----~d~~~v~~~~~~~ 102 (301)
T 3tjr_A 31 GRAAV--VTGGASGIGLAT-ATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVC-DV----RHLDEMVRLADEA 102 (301)
T ss_dssp TCEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEEC-CT----TCHHHHHHHHHHH
T ss_pred CCEEE--EeCCCCHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEc-cC----CCHHHHHHHHHHH
Confidence 34555 667777777663 233355788887765332222222 2234667766665 22 3556666555421
Q ss_pred ---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHH
Q 015435 176 ---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQ 205 (407)
Q Consensus 176 ---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~ 205 (407)
-...-++|++-...+.+. -.+.+++++..+
T Consensus 103 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~ 137 (301)
T 3tjr_A 103 FRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVID 137 (301)
T ss_dssp HHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred HHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHH
Confidence 112234452322222222 245666666544
No 425
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3
Probab=20.58 E-value=64 Score=27.81 Aligned_cols=23 Identities=4% Similarity=0.042 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHcCceeeeccc
Q 015435 197 LEQWEQIRQLMRSKGLLPFFDSA 219 (407)
Q Consensus 197 ~~~l~~i~~~~~~~~~~li~D~~ 219 (407)
.+.++++++.|.++|+.+|+|-.
T Consensus 76 ~~~ld~~v~~a~~~Gi~vild~h 98 (291)
T 1egz_A 76 KAKVERVVDAAIANDMYAIIGWH 98 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEcC
Confidence 46788999999999999999863
No 426
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=20.50 E-value=95 Score=22.39 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=38.7
Q ss_pred HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC--CCCcEEEEecCCCCCCCCCCCHHHHHHHHH
Q 015435 140 PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA--PSGAIVLLHACAHNPTGVDPTLEQWEQIRQ 205 (407)
Q Consensus 140 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~--~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~ 205 (407)
..+++..|+.+.++.+.....--.+-..+.+.+.+. ...+++++ ..----+|.+.+.+++.++..
T Consensus 36 ~~~lk~~Gi~V~RyNL~~~P~~F~~N~~V~~~L~~~G~~~LP~~~V-DGevv~~G~yPt~eEl~~~lg 102 (106)
T 3ktb_A 36 IESLKKQGIIVTRHNLRDEPQVYVSNKTVNDFLQKHGADALPITLV-DGEIAVSQTYPTTKQMSEWTG 102 (106)
T ss_dssp HHHHHHTTCCCEEEETTTCTTHHHHSHHHHHHHHTTCGGGCSEEEE-TTEEEECSSCCCHHHHHHHHC
T ss_pred HHHHHHCCCEEEEEccccChHHHhcCHHHHHHHHHcCcccCCEEEE-CCEEEEeccCCCHHHHHHHhC
Confidence 456667899999998842221112233455555532 24577777 222233788888998888753
No 427
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=20.47 E-value=3.6e+02 Score=22.11 Aligned_cols=99 Identities=5% Similarity=0.038 Sum_probs=49.2
Q ss_pred ceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCC-CCh---HHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcC
Q 015435 100 RVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTW-GNH---PKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAA 175 (407)
Q Consensus 100 ~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y-~~~---~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 175 (407)
..++ ..|++.++-..+ ...+...|-+|++..-.- ... ...++..|.++..+..+ - -|.+++++.+.+.
T Consensus 5 k~~l--VTGas~gIG~~i-a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-v----~d~~~v~~~~~~~ 76 (246)
T 3osu_A 5 KSAL--VTGASRGIGRSI-ALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQAN-V----ADADEVKAMIKEV 76 (246)
T ss_dssp CEEE--ETTCSSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECC-T----TCHHHHHHHHHHH
T ss_pred CEEE--EECCCChHHHHH-HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcc-C----CCHHHHHHHHHHH
Confidence 4555 677777777763 233456788887643221 111 12233456677777652 2 3556666555421
Q ss_pred ---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 176 ---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 176 ---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
-...-+++++-...+.+. -.+.+++++..+.
T Consensus 77 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~v 112 (246)
T 3osu_A 77 VSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDT 112 (246)
T ss_dssp HHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 112334553333222222 2466777766443
No 428
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=20.35 E-value=2.5e+02 Score=23.42 Aligned_cols=101 Identities=11% Similarity=0.013 Sum_probs=48.3
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecCCCCCChHHHHh---h-cC-ceeeEEEeecCCCCCcChhhHHHHHH
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFT---L-AG-LSVKTYRYYDPATRGLNFQGLLEDLR 173 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~p~y~~~~~~~~---~-~G-~~~~~v~~~~~~~~~~d~~~l~~~i~ 173 (407)
+.+++ ..|++.++-..+ .......|-+|++.+-.-.......+ . .+ .++..+..+ - -|.+++++.+.
T Consensus 8 ~k~~l--VTGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D-v----~~~~~v~~~~~ 79 (265)
T 3lf2_A 8 EAVAV--VTGGSSGIGLAT-VELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCD-V----LDALQVRAFAE 79 (265)
T ss_dssp TCEEE--EETCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECC-T----TCHHHHHHHHH
T ss_pred CCEEE--EeCCCChHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCC-C----CCHHHHHHHHH
Confidence 34566 667777777663 22335578888776533222222221 1 22 236666551 1 35555555443
Q ss_pred cC---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHHH
Q 015435 174 AA---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQLM 207 (407)
Q Consensus 174 ~~---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~~ 207 (407)
+. -...-+++++-...+.+. -.+.+++++..+.-
T Consensus 80 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N 118 (265)
T 3lf2_A 80 ACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLK 118 (265)
T ss_dssp HHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHH
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHH
Confidence 21 112234553333322222 25677777765553
No 429
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=20.30 E-value=3.9e+02 Score=23.47 Aligned_cols=73 Identities=11% Similarity=0.186 Sum_probs=43.7
Q ss_pred CCCChHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCcee
Q 015435 135 TWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLP 214 (407)
Q Consensus 135 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~v~i~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l 214 (407)
.|..+...+......++.+-. +. ....+-+.+++. . .+-+++ ..|.+ .+.++.+++.+.|+++|+.+
T Consensus 54 ~~~~~~~~l~~~~~D~V~i~t--p~--~~h~~~~~~al~--~-gk~vl~----EKP~~--~~~~~~~~l~~~a~~~~~~~ 120 (354)
T 3db2_A 54 GDATMEALLAREDVEMVIITV--PN--DKHAEVIEQCAR--S-GKHIYV----EKPIS--VSLDHAQRIDQVIKETGVKF 120 (354)
T ss_dssp CCSSHHHHHHCSSCCEEEECS--CT--TSHHHHHHHHHH--T-TCEEEE----ESSSC--SSHHHHHHHHHHHHHHCCCE
T ss_pred CcCCHHHHhcCCCCCEEEEeC--Ch--HHHHHHHHHHHH--c-CCEEEE----ccCCC--CCHHHHHHHHHHHHHcCCeE
Confidence 366666666655666666654 21 234455555665 2 233444 23432 34788888888888888877
Q ss_pred eecccc
Q 015435 215 FFDSAY 220 (407)
Q Consensus 215 i~D~~y 220 (407)
.+.-.+
T Consensus 121 ~v~~~~ 126 (354)
T 3db2_A 121 LCGHSS 126 (354)
T ss_dssp EEECGG
T ss_pred EEeech
Confidence 766543
No 430
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=20.20 E-value=3.2e+02 Score=22.96 Aligned_cols=100 Identities=8% Similarity=0.092 Sum_probs=49.0
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecC-CCCCC---hHHHHhhcCceeeEEEeecCCCCCcChhhHHHHHHc
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQ-PTWGN---HPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRA 174 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~-p~y~~---~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~ 174 (407)
..+++ ..|++.++-..+ ...+...|-+|++.. ..-.. ....++..|.++..+..+ - -|.+++++.+.+
T Consensus 31 gk~~l--VTGas~GIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D-v----~d~~~v~~~~~~ 102 (271)
T 3v2g_A 31 GKTAF--VTGGSRGIGAAI-AKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRAD-N----RDAEAIEQAIRE 102 (271)
T ss_dssp TCEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECC-T----TCHHHHHHHHHH
T ss_pred CCEEE--EeCCCcHHHHHH-HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECC-C----CCHHHHHHHHHH
Confidence 44566 667777777663 223355788887652 21111 112233457777777662 2 356666655542
Q ss_pred C---CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHH
Q 015435 175 A---PSGAIVLLHACAHNPTGV--DPTLEQWEQIRQL 206 (407)
Q Consensus 175 ~---~~~~~v~i~~~p~NPtG~--~~~~~~l~~i~~~ 206 (407)
. -...-++|++-.....+. -.+.+++++..+.
T Consensus 103 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~v 139 (271)
T 3v2g_A 103 TVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAV 139 (271)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 1 112334552322222222 1456677666543
No 431
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=20.06 E-value=1.6e+02 Score=24.93 Aligned_cols=32 Identities=9% Similarity=-0.074 Sum_probs=20.1
Q ss_pred CceEEeecCCcccHHHHHHHHHHhhcCCCeEEecC
Q 015435 99 NRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQ 133 (407)
Q Consensus 99 ~~i~~~~t~g~t~a~~~~~~~~~~~~~gd~Vi~~~ 133 (407)
..+++ ..|++.++-..+ ...+...|-+|++.+
T Consensus 15 gk~~l--VTGas~gIG~a~-a~~la~~G~~V~~~~ 46 (280)
T 3pgx_A 15 GRVAF--ITGAARGQGRSH-AVRLAAEGADIIACD 46 (280)
T ss_dssp TCEEE--EESTTSHHHHHH-HHHHHHTTCEEEEEE
T ss_pred CCEEE--EECCCcHHHHHH-HHHHHHCCCEEEEEe
Confidence 34566 667777777663 223355788887754
Done!