BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015438
(407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 52 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 108
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 109 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 151
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 208
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 209 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 245
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 36 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 92
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 93 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 148 SFDESVRIWDVK 159
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 26/220 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 189
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 190 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 234
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNVK 305
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294
Query: 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 295 QK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 235
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 236 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 282
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+Y+++L+ ++ ++ HT V +T C E+ + +D K+W C
Sbjct: 283 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 334
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 311 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW---DIRKMSSNASCNLGFRSYEW--DY 365
L GH + ++ + +G +L S+ D+ IK+W D + + + LG W D
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 366 RWMDYPPQARDLK---HPCDQSVATYKGHSVLRTLIRCHFSP 404
+ + LK + + T KGHS + C+F+P
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP 139
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 54 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 110
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 111 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 153
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 210
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 211 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 247
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 38 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 94
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 95 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 149
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 150 SFDESVRIWDVK 161
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 26/220 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 135 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 191
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 192 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 236
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNVK 305
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 296
Query: 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 297 QK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 180 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 237
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 238 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 284
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+Y+++L+ ++ ++ HT V +T C E+ + +D K+W C
Sbjct: 285 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 336
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 311 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW---DIRKMSSNASCNLGFRSYEW--DY 365
L GH + ++ + +G +L S+ D+ IK+W D + + + LG W D
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 366 RWMDYPPQARDLK---HPCDQSVATYKGHSVLRTLIRCHFSP 404
+ + LK + + T KGHS + C+F+P
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP 141
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G A I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLAASSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 189
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 190 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L A S+D I ++ K I H ++
Sbjct: 17 ALKFTLA---GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 74 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 129 SFDESVRIWDVK 140
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 169
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 170 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 214
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 275 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 217 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 263
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+Y+++L+ ++ ++ HT V +T C E+ + +D K+W C
Sbjct: 264 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 315
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 36 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 93 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 192
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 193 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
Query: 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
+GS +S + + L F+ A G++ + S+KFS +G L + S+D I ++
Sbjct: 3 LGSPEFQSKPTPVKPNYALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
Query: 258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317
K I H ++ V + +S +L+ S SDD K+WD GK L GH
Sbjct: 60 DGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSN 114
Query: 318 GITFIDSRGDGRYLISNGKDQAIKLWDIR 346
+ + ++S D+++++WD++
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 172
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 173 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 217
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 278 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 220 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 266
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+Y+++L+ ++ ++ HT V +T C E+ + +D K+W C
Sbjct: 267 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 318
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 36 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 93 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 192
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 193 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
Query: 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
+GS +S + + L F+ A G++ + S+KFS +G L + S+D I ++
Sbjct: 3 LGSSATQSKPTPVKPNYALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
Query: 258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317
K I H ++ V + +S +L+ S SDD K+WD GK L GH
Sbjct: 60 DGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSN 114
Query: 318 GITFIDSRGDGRYLISNGKDQAIKLWDIR 346
+ + ++S D+++++WD++
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 172
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 173 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 217
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 278 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 220 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 266
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+Y+++L+ ++ ++ HT V +T C E+ + +D K+W C
Sbjct: 267 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 318
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 35 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 91
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 92 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 191
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 192 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 228
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 19 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 75
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 76 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 130
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 131 SFDESVRIWDVK 142
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 26/220 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 116 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 172
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 173 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 217
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNVK 305
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 218 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 277
Query: 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 278 QK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 161 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 218
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 219 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 265
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+Y+++L+ ++ ++ HT V +T C E+ + +D K+W C
Sbjct: 266 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 317
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 311 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW---DIRKMSSNASCNLGFRSYEW--DY 365
L GH + ++ + +G +L S+ D+ IK+W D + + + LG W D
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 366 RWMDYPPQARDLK---HPCDQSVATYKGHSVLRTLIRCHFSP 404
+ + LK + + T KGHS + C+F+P
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP 122
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 30 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 86
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 87 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 186
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 187 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 14 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 71 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 126 SFDESVRIWDVK 137
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 166
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 167 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 211
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 272 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 214 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 260
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+Y+++L+ ++ ++ HT V +T C E+ + +D K+W C
Sbjct: 261 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 312
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 311 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW---DIRKMSSNASCNLGFRSYEW--DY 365
L GH + ++ + +G +L S+ D+ IK+W D + + + LG W D
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 366 RWMDYPPQARDLK---HPCDQSVATYKGHSVLRTLIRCHFSP 404
+ + LK + + T KGHS + C+F+P
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP 117
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 36 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 93 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 192
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 193 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
Query: 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
+GS +S + + L F+ A G++ + S+KFS +G L + S+D I ++
Sbjct: 3 MGSSATQSKPTPVKPNYALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
Query: 258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317
K I H ++ V + +S +L+ S SDD K+WD GK L GH
Sbjct: 60 DGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSN 114
Query: 318 GITFIDSRGDGRYLISNGKDQAIKLWDIR 346
+ + ++S D+++++WD++
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 26/220 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 173
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 174 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 218
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNVK 305
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 279 QK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 220 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 266
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+Y+++L+ ++ ++ HT V +T C E+ + +D K+W C
Sbjct: 267 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 318
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 26 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 82
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 83 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 182
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 183 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 219
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 10 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 66
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 67 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 121
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 122 SFDESVRIWDVK 133
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 106 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 162
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 163 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 207
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 208 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 267
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 268 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 152 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 209
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 210 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 256
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+Y+++L+ ++ ++ HT V +T C E+ + +D K+W C
Sbjct: 257 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 308
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 311 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW---DIRKMSSNASCNLGFRSYEW--DY 365
L GH + ++ + +G +L S+ D+ IK+W D + + + LG W D
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 366 RWMDYPPQARDLK---HPCDQSVATYKGHSVLRTLIRCHFSP 404
+ + LK + + T KGHS + C+F+P
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP 113
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 30 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 86
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 87 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 186
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 187 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 14 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 71 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 126 SFDESVRIWDVK 137
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 166
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 167 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 211
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 272 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 214 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 260
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+Y+++L+ ++ ++ HT V +T C E+ + +D K+W C
Sbjct: 261 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 312
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 311 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW---DIRKMSSNASCNLGFRSYEW--DY 365
L GH + ++ + +G +L S+ D+ IK+W D + + + LG W D
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 366 RWMDYPPQARDLK---HPCDQSVATYKGHSVLRTLIRCHFSP 404
+ + LK + + T KGHS + C+F+P
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP 117
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 47 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 103
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 104 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 203
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 204 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 240
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 31 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 87
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 88 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 142
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 143 SFDESVRIWDVK 154
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 127 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 183
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 184 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 228
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 229 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 288
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 289 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 173 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 230
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 231 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 277
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+Y+++L+ ++ ++ HT V +T C E+ + +D K+W C
Sbjct: 278 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 329
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 311 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW---DIRKMSSNASCNLGFRSYEW--DY 365
L GH + ++ + +G +L S+ D+ IK+W D + + + LG W D
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 366 RWMDYPPQARDLK---HPCDQSVATYKGHSVLRTLIRCHFSP 404
+ + LK + + T KGHS + C+F+P
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP 134
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 31 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 87
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 88 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 187
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 188 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 224
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 8/146 (5%)
Query: 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260
G+ +S + + L F+ A G++ + S+KFS +G L + S+D I ++ K
Sbjct: 1 GSTQSKPTPVKPNYALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 57
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
I H ++ V + +S +L+ S SDD K+WD GK L GH +
Sbjct: 58 FEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVF 112
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIR 346
+ ++S D+++++WD++
Sbjct: 113 CCNFNPQSNLIVSGSFDESVRIWDVK 138
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 111 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 167
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 168 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 212
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 213 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 272
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 273 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 157 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 214
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 215 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 261
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+Y+++L+ ++ ++ HT V +T C E+ + +D K+W C
Sbjct: 262 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 313
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 29 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 85
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 86 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 185
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 186 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 222
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 13 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 69
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 70 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 124
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 125 SFDESVRIWDVK 136
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 109 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 165
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 166 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 210
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 211 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 270
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 271 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 155 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 212
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 213 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 259
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+Y+++L+ ++ ++ HT V +T C E+ + +D K+W C
Sbjct: 260 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 311
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 311 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW---DIRKMSSNASCNLGFRSYEW--DY 365
L GH + ++ + +G +L S+ D+ IK+W D + + + LG W D
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 366 RWMDYPPQARDLK---HPCDQSVATYKGHSVLRTLIRCHFSP 404
+ + LK + + T KGHS + C+F+P
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP 116
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 189
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 190 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 17 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 74 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 129 SFDESVRIWDVK 140
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 24/193 (12%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 169
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 170 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 214
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 305 KGKPAGVLMGHLE 317
K L GH +
Sbjct: 275 VQK----LQGHTD 283
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 217 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 263
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+Y+++L+ ++ ++ HT V +T C E+ + +D K++ C
Sbjct: 264 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYKSDC 315
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 311 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW---DIRKMSSNASCNLGFRSYEW--DY 365
L GH + ++ + +G +L S+ D+ IK+W D + + + LG W D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 366 RWMDYPPQARDLK---HPCDQSVATYKGHSVLRTLIRCHFSP 404
+ + LK + + T KGHS + C+F+P
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP 120
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 189
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 190 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 17 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 74 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 129 SFDESVRIWDVK 140
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 24/193 (12%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 169
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 170 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 214
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 305 KGKPAGVLMGHLE 317
K L GH +
Sbjct: 275 VQK----LQGHTD 283
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 217 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 263
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 264 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 304
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 311 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW---DIRKMSSNASCNLGFRSYEW--DY 365
L GH + ++ + +G +L S+ D+ IK+W D + + + LG W D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 366 RWMDYPPQARDLK---HPCDQSVATYKGHSVLRTLIRCHFSP 404
+ + LK + + T KGHS + C+F+P
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP 120
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 189
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 190 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+KFS +G L + S+D I ++ K I H ++ V + +S +
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-N 81
Query: 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
L+ S SDD K+WD GK L GH + + ++S D+++++W
Sbjct: 82 LLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 344 DIR 346
D++
Sbjct: 138 DVK 140
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G + K + A S V+ + D +V
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL-KTLPAHSD--PVSAVHFNRDGSLIVS 169
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 170 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 214
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DN+ +W+ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI 274
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 275 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 217 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNM 263
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+Y+++L+ ++ ++ HT V +T C E+ + +D K+W C
Sbjct: 264 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 315
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 311 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW---DIRKMSSNASCNLGFRSYEW--DY 365
L GH + ++ + +G +L S+ D+ IK+W D + + + LG W D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 366 RWMDYPPQARDLK---HPCDQSVATYKGHSVLRTLIRCHFSP 404
+ + LK + + T KGHS + C+F+P
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP 120
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 189
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 190 ----LIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSK 226
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+KFS +G L + S+D I ++ K I H ++ V + +S +
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-N 81
Query: 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
L+ S SDD K+WD GK L GH + + ++S D+++++W
Sbjct: 82 LLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 344 DIR 346
D++
Sbjct: 138 DVK 140
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G + K + A S V+ + D +V
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL-KTLPAHSD--PVSAVHFNRDGSLIVS 169
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 170 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 214
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DN+ +W+ + +
Sbjct: 215 LDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI 274
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 275 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 217 NDLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNM 263
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+Y+++L+ ++ ++ HT V +T C E+ + +D K+W C
Sbjct: 264 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 315
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 311 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW---DIRKMSSNASCNLGFRSYEW--DY 365
L GH + ++ + +G +L S+ D+ IK+W D + + + LG W D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 366 RWMDYPPQARDLK---HPCDQSVATYKGHSVLRTLIRCHFSP 404
+ + LK + + T KGHS + C+F+P
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS--NYVFCCNFNP 120
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 28/213 (13%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG + +++++ G +Q S W V + SPD + + AS
Sbjct: 106 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV---AFSPDGQTIASASDDK 161
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251
V + + +++L G+S ++ + FS DG+ + + S D +
Sbjct: 162 TVKLWNRNGQLLQTLT-----------------GHSSSVWGVAFSPDGQTIASASDDKTV 204
Query: 252 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 311
+++ L + H+S V V F + G I S SDD K+W+R G+
Sbjct: 205 KLWNRNGQLLQT-LTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-----NGQLLQT 257
Query: 312 LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
L GH + + R DG+ + S D+ +KLW+
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 35/237 (14%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG + +++++ R ++ + + S +V + SPD + + AS
Sbjct: 188 FSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSS--SVRGVAFSPDGQTIASASDDK 243
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDF--------SAADD----------------GGYS 227
V + + +++L + +G+ F SA+DD G+S
Sbjct: 244 TVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 303
Query: 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS 287
++ + FS DG+ + + S D + +++ L + H+S V V F + G I S
Sbjct: 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT-LTGHSSSVWGVAFSPD-GQTIAS 361
Query: 288 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
SDD K+W+R G+ L GH + + DG+ + S D+ +KLW+
Sbjct: 362 ASDDKTVKLWNR-----NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 88/213 (41%), Gaps = 28/213 (13%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG + +++++ G +Q S W V + SPD + + AS
Sbjct: 393 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV---AFSPDDQTIASASDDK 448
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251
V + + +++L G+S + + FS DG+ + + S D +
Sbjct: 449 TVKLWNRNGQLLQTLT-----------------GHSSSVRGVAFSPDGQTIASASDDKTV 491
Query: 252 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 311
+++ L + H+S V V F + G I S SDD K+W+R G+
Sbjct: 492 KLWNRNGQLLQT-LTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-----NGQLLQT 544
Query: 312 LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
L GH + + DG+ + S D+ +KLW+
Sbjct: 545 LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S ++ + FS DG+ + + S D + +++ L + H+S V V F + G
Sbjct: 55 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVRGVAFSPD-GQT 112
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
I S SDD K+W+R G+ L GH + + DG+ + S D+ +KLW+
Sbjct: 113 IASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 35/237 (14%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG + +++++ G +Q S W V + SPD + + AS
Sbjct: 311 FSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGV---AFSPDGQTIASASDDK 366
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDFS--------AADD----------------GGYS 227
V + + +++L + G+ FS A+DD G+S
Sbjct: 367 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 426
Query: 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS 287
++ + FS D + + + S D + +++ L + H+S V V F + G I S
Sbjct: 427 SSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVRGVAFSPD-GQTIAS 484
Query: 288 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
SDD K+W+R G+ L GH + + DG+ + S D+ +KLW+
Sbjct: 485 ASDDKTVKLWNR-----NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 116/300 (38%), Gaps = 41/300 (13%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG + +++++ G +Q S W V + SPD + + AS
Sbjct: 147 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV---AFSPDGQTIASASDDK 202
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDFS--------AADD----------------GGYS 227
V + + +++L + G+ FS A+DD G+S
Sbjct: 203 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 262
Query: 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS 287
+ + F DG+ + + S D + +++ L + H+S V V F + G I S
Sbjct: 263 SSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVAFSPD-GQTIAS 320
Query: 288 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
SDD K+W+R G+ L GH + + DG+ + S D+ +KLW+
Sbjct: 321 ASDDKTVKLWNR-----NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--- 372
Query: 348 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSVLRTLIRCHFSPVY 406
N + R + + P + + D++V + + L + H S V+
Sbjct: 373 --RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 430
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 12/144 (8%)
Query: 264 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323
R+ AH+S V V F + G I S SDD K+W+R G+ L GH + +
Sbjct: 11 RLEAHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVA 64
Query: 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-D 382
DG+ + S D+ +KLW+ N + R + + P + + D
Sbjct: 65 FSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 119
Query: 383 QSVATYKGHSVLRTLIRCHFSPVY 406
++V + + L + H S V+
Sbjct: 120 KTVKLWNRNGQLLQTLTGHSSSVW 143
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSDVNTVCFGDE-SG 282
G++ + S+ FS D R++V+G D+ + V++++ + +L AHT V+ V F
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 342
+I SG DNL KVWD G+ L GH +T + DG S+ KD +L
Sbjct: 167 PVIVSGGWDNLVKVWDL----ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL 222
Query: 343 WDIRK 347
WD+ K
Sbjct: 223 WDLTK 227
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + S +G V+ S D + +++L+ + + L HT DV +V F ++ +
Sbjct: 65 GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI 124
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFI--DSRGDGRYLISNGKDQAI 340
+ SG DN +VW NVKG+ L H + ++ + D ++S G D +
Sbjct: 125 V-SGGRDNALRVW-----NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 341 KLWDI 345
K+WD+
Sbjct: 179 KVWDL 183
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 264 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323
R+ H++ V+ V + +G+ S S D+ ++W+ + G+ +GH + + +
Sbjct: 62 RLEGHSAFVSDVALSN-NGNFAVSASWDHSLRLWNLQ----NGQCQYKFLGHTKDVLSVA 116
Query: 324 SRGDGRYLISNGKDQAIKLWDIR 346
D R ++S G+D A+++W+++
Sbjct: 117 FSPDNRQIVSGGRDNALRVWNVK 139
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 365
G P L GH ++ + +G + +S D +++LW+++ N C F + D
Sbjct: 57 GLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ----NGQCQYKFLGHTKDV 112
Query: 366 RWMDYPPQARDL 377
+ + P R +
Sbjct: 113 LSVAFSPDNRQI 124
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 100/229 (43%), Gaps = 35/229 (15%)
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
PVD A+ FS D G ++ I+ VE G +K+ + + + S
Sbjct: 122 PVD-----AWTLAFSPDSQYLATGTHVGKVNIFGVESG---KKEYSLDTRGKFILSIAYS 173
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
PD ++L ++ I++I D+ +G L + E G++ I SL FS D
Sbjct: 174 PDGKYLASGAIDGIINIFDIATG---KLLHTLE-------------GHAMPIRSLTFSPD 217
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298
+ LV S D I +YD++ L+ + H S V V F + H + S S D KVWD
Sbjct: 218 SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSS-SSDKSVKVWD 276
Query: 299 ---RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
R C++ H + + + G+G ++S G DQ I ++D
Sbjct: 277 VGTRTCVH-------TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 24/200 (12%)
Query: 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205
+ IR++D+E G +I+ WT+ + SPD ++L + V+I V SG E
Sbjct: 102 AHIRLWDLENGKQIKSIDAGPVDAWTL---AFSPDSQYLATGTHVGKVNIFGVESGKKE- 157
Query: 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265
+S G + I S+ +S DG+ L +G+ D I ++D+ KL +
Sbjct: 158 ------------YSLDTRGKF---ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 202
Query: 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325
H + ++ F +S L+ + SDD K++D + N+ AG L GH + +
Sbjct: 203 EGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANL----AGTLSGHASWVLNVAFC 257
Query: 326 GDGRYLISNGKDQAIKLWDI 345
D + +S+ D+++K+WD+
Sbjct: 258 PDDTHFVSSSSDKSVKVWDV 277
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 86/195 (44%), Gaps = 16/195 (8%)
Query: 152 DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE 211
D+ + WK + + L L+W SL Q +V +S + I S ++++ + +
Sbjct: 58 DLVKVWKWRDERL--DLQW-----SLEGHQLGVVSVDISHTLPIA--ASSSLDAHIRLWD 108
Query: 212 IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271
+ +G + D G ++L FS D + L G+ + ++ +E+ K +
Sbjct: 109 LENGKQIKSIDAG--PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166
Query: 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL 331
+ ++ + + G + SG+ D + ++D GK L GH I + D + L
Sbjct: 167 ILSIAYSPD-GKYLASGAIDGIINIFDI----ATGKLLHTLEGHAMPIRSLTFSPDSQLL 221
Query: 332 ISNGKDQAIKLWDIR 346
++ D IK++D++
Sbjct: 222 VTASDDGYIKIYDVQ 236
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 267 AHTSDVNTVCFG---DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323
AH + +V +G E+ + +GS D+L KVW R + + + L GH G+ +D
Sbjct: 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWS--LEGHQLGVVSVD 87
Query: 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357
S+ D I+LWD+ S + G
Sbjct: 88 ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG 121
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
I S+ FS DG+ L G+ D I ++D+E K+ + + H D+ ++ + SG + SGS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF-PSGDKLVSGS 184
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWD 344
D ++WD R + + +G+T + S GDG+Y+ + D+A+++WD
Sbjct: 185 GDRTVRIWDLRT-----GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 89/228 (39%), Gaps = 35/228 (15%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG G + IRI+D+E + ++ + + P LV S
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIV---MILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251
V I D+ +G + I DG+ A G DG+ + AGS D +
Sbjct: 188 TVRIWDLRTG---QCSLTLSIEDGVTTVAVSPG-------------DGKYIAAGSLDRAV 231
Query: 252 YVYDLEANKLSLRI-------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 304
V+D E L R+ H V +V F + G + SGS D K+W+ + N
Sbjct: 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANN 290
Query: 305 K--------GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
K G +GH + + + + + Y++S KD+ + WD
Sbjct: 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+ I+SL + G +LV+GS D + ++DL + SL L+ V TV G
Sbjct: 163 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL-TLSIEDGVTTVAVSPGDGKY 221
Query: 285 IYSGSDDNLCKVWDRRC------LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ 338
I +GS D +VWD L+ + + GH + + + DG+ ++S D+
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESG---TGHKDSVYSVVFTRDGQSVVSGSLDR 278
Query: 339 AIKLWDIRKMSSNA 352
++KLW+++ ++ +
Sbjct: 279 SVKLWNLQNANNKS 292
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 211 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---- 266
E+H LD ++ + +KFS DG L G + VY + L R+
Sbjct: 56 ELHKSLDHTSV--------VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA 106
Query: 267 ------------AHTSD--VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 312
+ +SD + +VCF + G + +G++D L ++WD K +L
Sbjct: 107 ANKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLATGAEDRLIRIWDIE----NRKIVMIL 161
Query: 313 MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
GH + I +D G L+S D+ +++WD+R
Sbjct: 162 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 37/243 (15%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVY 186
Y + G V+G +RI+D+ G + L S+ VT ++SP D +++
Sbjct: 169 YSLDYFPSGDKLVSGSGDRTVRIWDLRTG----QCSLTLSIEDGVTTVAVSPGDGKYIAA 224
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
S+ V + D +G + + LD G+ ++S+ F+ DG+ +V+GS
Sbjct: 225 GSLDRAVRVWDSETGFLV---------ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275
Query: 247 SDDCIYVYDLE-ANKLS-----------LRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 294
D + +++L+ AN S + + H V +V ++ I SGS D
Sbjct: 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT-TQNDEYILSGSKDRGV 334
Query: 295 KVWDRRCLNVKGKPAGVLMGHLEGITFI-----DSRGDGRYLISNGK-DQAIKLWDIRKM 348
WD++ G P +L GH + + S G + + G D ++W +K+
Sbjct: 335 LFWDKK----SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390
Query: 349 SSN 351
+ N
Sbjct: 391 APN 393
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275
LD A +D + FS+D + S+D + ++D KL H+ VN
Sbjct: 658 LDIKAHEDE-----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 712
Query: 276 CFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
F ++S HL+ +GS+D K+WD LN K + + GH + D L S
Sbjct: 713 HFTNKSNHLLLATGSNDFFLKLWD---LNQK-ECRNTMFGHTNSVNHCRFSPDDELLASC 768
Query: 335 GKDQAIKLWDIRKMSSNASCNL 356
D ++LWD+R + S N+
Sbjct: 769 SADGTLRLWDVRSANERKSINV 790
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 79/190 (41%), Gaps = 16/190 (8%)
Query: 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI 230
+V SPD L S + + DV S NV F +++D +
Sbjct: 752 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF-----FLSSEDPPEDVEV 806
Query: 231 F--SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIY 286
+S DG +++ + + + ++D+ + L I HT +T+ + D S HL
Sbjct: 807 IVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEI--HTGHHSTIQYCDFSPYDHLAV 863
Query: 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
++W+ ++ + K A GHL + + DG ++ DQ I++W+ +
Sbjct: 864 IALSQYCVELWN---IDSRLKVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 919
Query: 347 KMSSNASCNL 356
K+ N++ L
Sbjct: 920 KVCKNSAIVL 929
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 26/170 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
QF+ADG ++ + S I++++ W+ + ++ + TV D L D R L + S
Sbjct: 1017 QFTADGKTLISSSEDSVIQVWN----WQTGDYVFLQAHQETVKDFRLLQDSRLLSW-SFD 1071
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
V + +V +G +E DF+ + + S S+D + + S+D
Sbjct: 1072 GTVKVWNVITGRIER-----------DFTC-----HQGTVLSCAISSDATKFSSTSADKT 1115
Query: 251 --IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298
I+ +DL + L+ H V F + G L+ +G D+ ++W+
Sbjct: 1116 AKIWSFDLLSPLHELK--GHNGCVRCSAFSLD-GILLATGDDNGEIRIWN 1162
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 19/106 (17%)
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298
G +L+AG + Y+ + + + L + + V FGDE G + + ++ +
Sbjct: 952 GLQLIAGKTGQIDYLPEAQVSCCCL-----SPHLEYVAFGDEDGAI-------KIIELPN 999
Query: 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
R + +GV GH + + I DG+ LIS+ +D I++W+
Sbjct: 1000 NRVFS-----SGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQ-------KDILAKSLRWTVTDTSLSPDQR 182
S FS DG L G +IRI++V G + ++ A W VTD SPD +
Sbjct: 1140 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW-VTDVCFSPDSK 1198
Query: 183 HLVYA 187
LV A
Sbjct: 1199 TLVSA 1203
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275
LD A +D + FS+D + S+D + ++D KL H+ VN
Sbjct: 651 LDIKAHEDE-----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 705
Query: 276 CFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
F ++S HL+ +GS+D K+WD LN K + + GH + D L S
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLWD---LNQK-ECRNTMFGHTNSVNHCRFSPDDELLASC 761
Query: 335 GKDQAIKLWDIRKMSSNASCNL 356
D ++LWD+R + S N+
Sbjct: 762 SADGTLRLWDVRSANERKSINV 783
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 79/190 (41%), Gaps = 16/190 (8%)
Query: 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI 230
+V SPD L S + + DV S NV F +++D +
Sbjct: 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF-----FLSSEDPPEDVEV 799
Query: 231 F--SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIY 286
+S DG +++ + + + ++D+ + L I HT +T+ + D S HL
Sbjct: 800 IVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEI--HTGHHSTIQYCDFSPYDHLAV 856
Query: 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
++W+ ++ + K A GHL + + DG ++ DQ I++W+ +
Sbjct: 857 IALSQYCVELWN---IDSRLKVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
Query: 347 KMSSNASCNL 356
K+ N++ L
Sbjct: 913 KVCKNSAIVL 922
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 26/170 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
QF+ADG ++ + S I++++ W+ + ++ + TV D L D R L + S
Sbjct: 1010 QFTADGKTLISSSEDSVIQVWN----WQTGDYVFLQAHQETVKDFRLLQDSRLLSW-SFD 1064
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
V + +V +G +E DF+ + + S S+D + + S+D
Sbjct: 1065 GTVKVWNVITGRIER-----------DFTC-----HQGTVLSCAISSDATKFSSTSADKT 1108
Query: 251 --IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298
I+ +DL + L+ H V F + G L+ +G D+ ++W+
Sbjct: 1109 AKIWSFDLLSPLHELK--GHNGCVRCSAFSLD-GILLATGDDNGEIRIWN 1155
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 19/106 (17%)
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298
G +L+AG + Y+ + + + L + + V FGDE G + + ++ +
Sbjct: 945 GLQLIAGKTGQIDYLPEAQVSCCCL-----SPHLEYVAFGDEDGAI-------KIIELPN 992
Query: 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
R + +GV GH + + I DG+ LIS+ +D I++W+
Sbjct: 993 NRVFS-----SGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQ-------KDILAKSLRWTVTDTSLSPDQR 182
S FS DG L G +IRI++V G + ++ A W VTD SPD +
Sbjct: 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW-VTDVCFSPDSK 1191
Query: 183 HLVYA 187
LV A
Sbjct: 1192 TLVSA 1196
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 228
V SL+PD R V SG ++ A + ++ +G+ F+ G+
Sbjct: 187 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 227
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 283
I ++ F +G GS D ++DL A++ ++ ++ D + +V F +SG
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 283
Query: 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
L+ +G DD C VWD +K AGVL GH ++ + DG + + D +K+W
Sbjct: 284 LLLAGYDDFNCNVWDA----LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 344 D 344
+
Sbjct: 340 N 340
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
DD C+++D ++ + H + GIT + GR L++ D +WD
Sbjct: 246 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 347 K 347
K
Sbjct: 301 K 301
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+ I+++ + TD R LV+ S D + ++D I +S V T + SG+
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-PSGNY 111
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIK 341
+ G DN+C +++ + + + L GH L F+D D + + S+G D
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSG-DTTCA 167
Query: 342 LWDI 345
LWDI
Sbjct: 168 LWDI 171
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 26/194 (13%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 285
+ + ++ G + G D+ +Y+L+ + ++R+ HT ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
+ S D C +WD G+ GH + + D R +S D + KLWD+
Sbjct: 158 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQ------------ARDLKHPCDQSVATYKGHSV 393
R+ C F +E D + + P R DQ + TY ++
Sbjct: 214 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 394 LRTLIRCHFSPVYR 407
+ + FS R
Sbjct: 270 ICGITSVSFSKSGR 283
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 228
V SL+PD R V SG ++ A + ++ +G+ F+ G+
Sbjct: 187 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 227
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 283
I ++ F +G GS D ++DL A++ ++ ++ D + +V F +SG
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 283
Query: 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
L+ +G DD C VWD +K AGVL GH ++ + DG + + D +K+W
Sbjct: 284 LLLAGYDDFNCNVWDA----LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 344 D 344
+
Sbjct: 340 N 340
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
DD C+++D ++ + H + GIT + GR L++ D +WD
Sbjct: 246 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 347 K 347
K
Sbjct: 301 K 301
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+ I+++ + TD R L++ S D + ++D I +S V T + SG+
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-PSGNY 111
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIK 341
+ G DN+C +++ + + + L GH L F+D D + + S+G D
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSG-DTTCA 167
Query: 342 LWDI 345
LWDI
Sbjct: 168 LWDI 171
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 100/266 (37%), Gaps = 55/266 (20%)
Query: 187 ASMSPIVHIVD-VGSGTMES-------LANVTEIHDGLD----FSAADDGGY-------- 226
A++S I + +D VG M + LA + +H G D SA+ DG
Sbjct: 28 ATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT 87
Query: 227 ---------SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVN 273
S + + ++ G + G D+ +Y+L+ + ++R+ HT ++
Sbjct: 88 NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS 147
Query: 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLIS 333
F D+ + I + S D C +WD G+ GH + + D R +S
Sbjct: 148 CCRFLDD--NQIVTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 334 NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ------------ARDLKHPC 381
D + KLWD+R+ C F +E D + + P R
Sbjct: 202 GACDASAKLWDVRE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 382 DQSVATYKGHSVLRTLIRCHFSPVYR 407
DQ + TY +++ + FS R
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGR 283
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 228
V SL+PD R V SG ++ A + ++ +G+ F+ G+
Sbjct: 187 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 227
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 283
I ++ F +G GS D ++DL A++ ++ ++ D + +V F +SG
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 283
Query: 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
L+ +G DD C VWD +K AGVL GH ++ + DG + + D +K+W
Sbjct: 284 LLLAGYDDFNCNVWDA----LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 344 D 344
+
Sbjct: 340 N 340
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
DD C+++D ++ + H + GIT + GR L++ D +WD
Sbjct: 246 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 347 K 347
K
Sbjct: 301 K 301
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+ I+++ + TD R LV+ S D + ++D I +S V T + SG+
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-PSGNY 111
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIK 341
+ G DN+C +++ + + + L GH L F+D D + + S+G D
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSG-DTTCA 167
Query: 342 LWDI 345
LWDI
Sbjct: 168 LWDI 171
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 26/194 (13%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 285
+ + ++ G + G D+ +Y+L+ + ++R+ HT ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
+ S D C +WD G+ GH + + D R +S D + KLWD+
Sbjct: 158 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQ------------ARDLKHPCDQSVATYKGHSV 393
R+ C F +E D + + P R DQ + TY ++
Sbjct: 214 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 394 LRTLIRCHFSPVYR 407
+ + FS R
Sbjct: 270 ICGITSVSFSKSGR 283
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 228
V SL+PD R V SG ++ A + ++ +G+ F+ G+
Sbjct: 198 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 238
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 283
I ++ F +G GS D ++DL A++ ++ ++ D + +V F +SG
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 294
Query: 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
L+ +G DD C VWD +K AGVL GH ++ + DG + + D +K+W
Sbjct: 295 LLLAGYDDFNCNVWDA----LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Query: 344 D 344
+
Sbjct: 351 N 351
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 198 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 256
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
DD C+++D ++ + H + GIT + GR L++ D +WD
Sbjct: 257 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 311
Query: 347 K 347
K
Sbjct: 312 K 312
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+ I+++ + TD R LV+ S D + ++D I +S V T + SG+
Sbjct: 64 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-PSGNY 122
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIK 341
+ G DN+C +++ + + + L GH L F+D D + + S+G D
Sbjct: 123 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSG-DTTCA 178
Query: 342 LWDI 345
LWDI
Sbjct: 179 LWDI 182
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 26/194 (13%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 285
+ + ++ G + G D+ +Y+L+ + ++R+ HT ++ F D+ + I
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 168
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
+ S D C +WD G+ GH + + D R +S D + KLWD+
Sbjct: 169 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Query: 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQ------------ARDLKHPCDQSVATYKGHSV 393
R+ C F +E D + + P R DQ + TY ++
Sbjct: 225 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 280
Query: 394 LRTLIRCHFSPVYR 407
+ + FS R
Sbjct: 281 ICGITSVSFSKSGR 294
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 228
V SL+PD R V SG ++ A + ++ +G+ F+ G+
Sbjct: 187 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 227
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 283
I ++ F +G GS D ++DL A++ ++ ++ D + +V F +SG
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 283
Query: 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
L+ +G DD C VWD +K AGVL GH ++ + DG + + D +K+W
Sbjct: 284 LLLAGYDDFNCNVWDA----LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 344 D 344
+
Sbjct: 340 N 340
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
DD C+++D ++ + H + GIT + GR L++ D +WD
Sbjct: 246 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 347 K 347
K
Sbjct: 301 K 301
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+ I+++ + TD R L++ S D + ++D I +S V T + SG+
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-PSGNY 111
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIK 341
+ G DN+C +++ + + + L GH L F+D D + + S+G D
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSG-DTTCA 167
Query: 342 LWDI 345
LWDI
Sbjct: 168 LWDI 171
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 100/266 (37%), Gaps = 55/266 (20%)
Query: 187 ASMSPIVHIVD-VGSGTMES-------LANVTEIHDGLD----FSAADDGGY-------- 226
A++S I + +D VG M + LA + +H G D SA+ DG
Sbjct: 28 ATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT 87
Query: 227 ---------SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVN 273
S + + ++ G + G D+ +Y+L+ + ++R+ HT ++
Sbjct: 88 NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS 147
Query: 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLIS 333
F D+ + I + S D C +WD G+ GH + + D R +S
Sbjct: 148 CCRFLDD--NQIVTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 334 NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ------------ARDLKHPC 381
D + KLWD+R+ C F +E D + + P R
Sbjct: 202 GACDASAKLWDVRE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 382 DQSVATYKGHSVLRTLIRCHFSPVYR 407
DQ + TY +++ + FS R
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGR 283
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 338
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 339 AIKLWDIRKMSSNA 352
+K W++ + A
Sbjct: 177 MVKAWNLNQFQIEA 190
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 28/180 (15%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGI 230
V D +L+ D + + AS + + DV +G T + G+ +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-----------------GHKSDV 110
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GDESGHLI 285
S+ +++GS D I V+ ++ L+ +L H V+ V D+ I
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
S +D + K W+ ++ +GH I + + DG + S GKD I LW++
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 57 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 115
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 338
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 116 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 339 AIKLWDIRKMSSNA 352
+K W++ + A
Sbjct: 171 MVKAWNLNQFQIEA 184
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 28/180 (15%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGI 230
V D +L+ D + + AS + + DV +G T + G+ +
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-----------------GHKSDV 104
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GDESGHLI 285
S+ +++GS D I V+ ++ L+ +L H V+ V D+ I
Sbjct: 105 MSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTI 163
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
S +D + K W+ ++ +GH I + + DG + S GKD I LW++
Sbjct: 164 ISAGNDKMVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 219
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 338
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 339 AIKLWDIRKMSSNA 352
+K W++ + A
Sbjct: 177 MVKAWNLNQFQIEA 190
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 28/180 (15%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGI 230
V D +L+ D + + AS + + DV +G T + G+ +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-----------------GHKSDV 110
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GDESGHLI 285
S+ +++GS D I V+ ++ L+ +L H V+ V D+ I
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
S +D + K W+ ++ +GH I + + DG + S GKD I LW++
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 338
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 339 AIKLWDIRKMSSNA 352
+K W++ + A
Sbjct: 177 MVKAWNLNQFQIEA 190
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 28/180 (15%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGI 230
V D +L+ D + + AS + + DV +G T + G+ +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-----------------GHKSDV 110
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GDESGHLI 285
S+ +++GS D I V+ ++ L+ +L H V+ V D+ I
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
S +D + K W+ ++ +GH I + + DG + S GKD I LW++
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 338
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 339 AIKLWDIRKMSSNA 352
+K W++ + A
Sbjct: 177 MVKAWNLNQFQIEA 190
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 28/180 (15%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGI 230
V D +L+ D + + AS + + DV +G T + G+ +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-----------------GHKSDV 110
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GDESGHLI 285
S+ +++GS D I V+ ++ L+ +L H V+ V D+ I
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
S +D + K W+ ++ +GH I + + DG + S GKD I LW++
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
IF FS +V+ S D I V+D E + HT V + F D SG L+ S S
Sbjct: 115 IFHPVFSV----MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF-DHSGKLLASCS 169
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
D K+WD + + GH ++ + +G +++S +D+ IK+W+++
Sbjct: 170 ADMTIKLWDFQGFEC----IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 22/221 (9%)
Query: 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194
+G V+ + I++++V+ G+ ++ W + P+Q + AS S
Sbjct: 203 NGDHIVSASRDKTIKMWEVQTGYCVK--TFTGHREWV---RMVRPNQDGTLIASCSNDQT 257
Query: 195 IVDVGSGTMESLANVTEIHDGLD-FSAADDGGYS-----FGIFSLKFSTDGRELVAGSSD 248
+ T E A + E ++ S A + YS G + K G L++GS D
Sbjct: 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 317
Query: 249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD---RRCLNVK 305
I ++D+ + ++ H + V V F G I S +DD +VWD +RC+
Sbjct: 318 KTIKMWDVSTGMCLMTLVGHDNWVRGVLF-HSGGKFILSCADDKTLRVWDYKNKRCMKT- 375
Query: 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
L H +T +D Y+++ DQ +K+W+ R
Sbjct: 376 ------LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 63/150 (42%), Gaps = 9/150 (6%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G++ + + F G+ L + S+D I ++D + + + H +V++V H+
Sbjct: 148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 207
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
+ S S D K+W+ + G GH E + + DG + S DQ +++W
Sbjct: 208 V-SASRDKTIKMWEVQT----GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Query: 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374
+ + C R + + + P++
Sbjct: 263 V----ATKECKAELREHRHVVECISWAPES 288
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326
H S V V F ++ S S+D KVWD G L GH + + I
Sbjct: 106 GHRSPVTRVIFHPVFSVMV-SASEDATIKVWDYET----GDFERTLKGHTDSVQDISFDH 160
Query: 327 DGRYLISNGKDQAIKLWDIR 346
G+ L S D IKLWD +
Sbjct: 161 SGKLLASCSADMTIKLWDFQ 180
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDI-DKKASX 121
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 338
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 339 AIKLWDIRKMSSNA 352
+K W++ + A
Sbjct: 177 XVKAWNLNQFQIEA 190
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 28/180 (15%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGI 230
V D +L+ D + + AS + + DV +G T + G+ +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-----------------GHKSDV 110
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GDESGHLI 285
S+ +++GS D I V+ ++ L+ +L H V+ V D+ I
Sbjct: 111 XSVDIDKKASXIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
S +D K W+ ++ +GH I + + DG + S GKD I LW++
Sbjct: 170 ISAGNDKXVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+ FS+D R++V+GS D I +++ L K +++ +H+ V+ V F S +
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 162
Query: 284 -LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 342
+I S D L KVW+ +K +GH + + DG S GKD L
Sbjct: 163 PIIVSCGWDKLVKVWNLANCKLKTNH----IGHTGYLNTVTVSPDGSLCASGGKDGQAML 218
Query: 343 WDIRK 347
WD+ +
Sbjct: 219 WDLNE 223
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + S+DG+ ++GS D + ++DL + R + HT DV +V F ++ +
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFI--DSRGDGRYLISNGKDQAI 340
+ SGS D K+W N G + H E ++ + ++S G D+ +
Sbjct: 121 V-SGSRDKTIKLW-----NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 341 KLWDIRKMSSNASCNL 356
K+W++ A+C L
Sbjct: 175 KVWNL------ANCKL 184
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 260 KLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD-RRCLNVKGKPAGVLMGHL 316
+++LR + H V + + +I S S D +W R G P L GH
Sbjct: 4 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS 63
Query: 317 EGITFIDSRGDGRYLISNGKDQAIKLWDI 345
++ + DG++ +S D ++LWD+
Sbjct: 64 HFVSDVVISSDGQFALSGSWDGTLRLWDL 92
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+ FS+D R++V+GS D I +++ L K +++ +H+ V+ V F S +
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185
Query: 284 -LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 342
+I S D L KVW+ +K +GH + + DG S GKD L
Sbjct: 186 PIIVSCGWDKLVKVWNLANCKLKTNH----IGHTGYLNTVTVSPDGSLCASGGKDGQAML 241
Query: 343 WDIRK 347
WD+ +
Sbjct: 242 WDLNE 246
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + S+DG+ ++GS D + ++DL + R + HT DV +V F ++ +
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFI--DSRGDGRYLISNGKDQAI 340
+ SGS D K+W N G + H E ++ + ++S G D+ +
Sbjct: 144 V-SGSRDKTIKLW-----NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 341 KLWDIRKMSSNASCNL 356
K+W++ A+C L
Sbjct: 198 KVWNL------ANCKL 207
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 251 IYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD-RRCLNVKGK 307
+Y + +++LR + H V + + +I S S D +W R G
Sbjct: 18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI 77
Query: 308 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
P L GH ++ + DG++ +S D ++LWD+
Sbjct: 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242
++V ++ V++ + SG++ +LA E S + S+K+S DG L
Sbjct: 105 NVVAVALERNVYVWNADSGSVSALAETDE---------------STYVASVKWSHDGSFL 149
Query: 243 VAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
G + + +YD+E+ + LR +A H + V + + + H++ SGS D R
Sbjct: 150 SVGLGNGLVDIYDVES-QTKLRTMAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRI 205
Query: 302 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
N + G L GH + + R DG L S G D +++WD R
Sbjct: 206 ANHQ---IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 31/174 (17%)
Query: 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK----DILAKSLRWTVTDT 175
D++T A V ++S DGS G + IYDVE K++ L W
Sbjct: 131 TDESTYVASV-KWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW----- 184
Query: 176 SLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK 234
RH++ + S S +H DV +AN G+S + L
Sbjct: 185 -----NRHVLSSGSRSGAIHHHDV------RIAN---------HQIGTLQGHSSEVCGLA 224
Query: 235 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG 288
+ +DG +L +G +D+ + ++D ++ H + V V + +L+ +G
Sbjct: 225 WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATG 278
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 107/264 (40%), Gaps = 71/264 (26%)
Query: 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181
+T+ Y Q+ D V+G + + I+I+D + K IL T + L D+
Sbjct: 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWD--KNTLECKRILTGH---TGSVLCLQYDE 183
Query: 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241
R ++ S V + DV +G M + T IH + + L+F+
Sbjct: 184 RVIITGSSDSTVRVWDVNTGEMLN----TLIH------------HCEAVLHLRFNNG--M 225
Query: 242 LVAGSSDDCIYVYDLEA-NKLSLR--ILAHTSDVNTVCFGDE------------------ 280
+V S D I V+D+ + ++LR ++ H + VN V F D+
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST 285
Query: 281 -------SGH------------LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 321
+GH L+ SGS DN ++WD C G VL GH E +
Sbjct: 286 CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC----GACLRVLEGHEELVRC 341
Query: 322 IDSRGDGRYLISNGKDQAIKLWDI 345
I R D + ++S D IK+WD+
Sbjct: 342 I--RFDNKRIVSGAYDGKIKVWDL 363
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SG 288
+ FSTD R + S D + +++ +L H+ VN F + S HL+ +G
Sbjct: 666 VLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATG 725
Query: 289 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348
S D K+WD LN K + + GH + D + L S D +KLWD
Sbjct: 726 SSDCFLKLWD---LNQK-ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA 781
Query: 349 SSNASCNL 356
+ S N+
Sbjct: 782 NERKSINV 789
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 12/188 (6%)
Query: 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI 230
+V SPD + L S + + D S NV + L+ D +
Sbjct: 751 SVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQED---MEVIV 807
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSG 288
+S DG ++ + + I+++D+ + L I HT +T+ + D S HL
Sbjct: 808 KCCSWSADGARIMVAAKNK-IFLFDIHTSGLLGEI--HTGHHSTIQYCDFSPQNHLAVVA 864
Query: 289 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348
++W+ + + K A GHL + + DG +++ DQ I+LW+ +K+
Sbjct: 865 LSQYCVELWNT---DSRSKVADC-RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKV 920
Query: 349 SSNASCNL 356
N++ L
Sbjct: 921 CKNSAVML 928
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 24/188 (12%)
Query: 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183
T Y + FS DG + ++++ E G K+ + K+ V + S D R
Sbjct: 621 TDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKL---LEIKAHEDEVLCCAFSTDDRF 677
Query: 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243
+ S+ V I + +G + +H D+ S+ L
Sbjct: 678 IATCSVDKKVKIWNSMTGEL--------VH------TYDEHSEQVNCCHFTNSSHHLLLA 723
Query: 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD----- 298
GSSD + ++DL + + HT+ VN F + L+ S S D K+WD
Sbjct: 724 TGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDK-LLASCSADGTLKLWDATSAN 782
Query: 299 -RRCLNVK 305
R+ +NVK
Sbjct: 783 ERKSINVK 790
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 22/232 (9%)
Query: 126 RAYVSQ-----FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
+A+VS+ F G ++ Q Q++I+ V+ G + I R TVTD ++
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDR 189
Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTE-IHDGLD----FSAADDGGYSFGIF---S 232
R+++ AS+ + + + G+GT N E HDG++ F D + +
Sbjct: 190 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 249
Query: 233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDD 291
L+F T G+ ++AG I V+++ + + ++++ + T N++ + + IY+G ++
Sbjct: 250 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN 309
Query: 292 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKL 342
+ WD R P G + + EG + G +S+G D +IKL
Sbjct: 310 GMLAQWDLRSPEC---PVGEFLIN-EGTPINNVYFAAGALFVSSGFDTSIKL 357
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 240 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 299
R + G+++ I V D N AH S++ + F SG + S S D K+W
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFF-PSGEALISSSQDMQLKIWSV 165
Query: 300 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
+ G L+GH +T I GR ++S D I+LW+
Sbjct: 166 K----DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 22/232 (9%)
Query: 126 RAYVSQ-----FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
+A+VS+ F G ++ Q Q++I+ V+ G + I R TVTD ++
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDR 192
Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTE-IHDGLD----FSAADDGGYSFGIF---S 232
R+++ AS+ + + + G+GT N E HDG++ F D + +
Sbjct: 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 252
Query: 233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDD 291
L+F T G+ ++AG I V+++ + + ++++ + T N++ + + IY+G ++
Sbjct: 253 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN 312
Query: 292 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKL 342
+ WD R P G + + EG + G +S+G D +IKL
Sbjct: 313 GMLAQWDLRSPEC---PVGEFLIN-EGTPINNVYFAAGALFVSSGFDTSIKL 360
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 240 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 299
R + G+++ I V D N AH S++ + F SG + S S D K+W
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFF-PSGEALISSSQDMQLKIWSV 168
Query: 300 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
+ G L+GH +T I GR ++S D I+LW+
Sbjct: 169 K----DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 14/125 (11%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G++ ++SL+F DG +V+GS D I V+D+E + H S + + D ++
Sbjct: 277 GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NI 331
Query: 285 IYSGSDDNLCKVWDRR---CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341
+ SG+ D+ K+WD + CL P H +T + + + ++I++ D +K
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNK----HQSAVTCL--QFNKNFVITSSDDGTVK 385
Query: 342 LWDIR 346
LWD++
Sbjct: 386 LWDLK 390
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 17/168 (10%)
Query: 183 HLVYASMSPI----VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
H +Y S + +H V SG+ ++ V +I G G+ + +++ D
Sbjct: 193 HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL--MGHVAAVRCVQY--D 248
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298
GR +V+G+ D + V+D E + HT+ V ++ F G + SGS D +VWD
Sbjct: 249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWD 305
Query: 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
G L GH + ++ + + L+S D +K+WDI+
Sbjct: 306 VE----TGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIK 347
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 43/151 (28%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
I L+F G +V+GS D+ + V+ K ++ HT V + D ++I SGS
Sbjct: 122 ITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGS 176
Query: 290 DDNLCKVWDR----------------RCLNV--------------------KGKPAGVLM 313
D KVW+ RC+++ G+ VLM
Sbjct: 177 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLM 236
Query: 314 GHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
GH+ + + DGR ++S D +K+WD
Sbjct: 237 GHVAAVRCVQY--DGRRVVSGAYDFMVKVWD 265
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD 290
L S G V+G D V+D+ + + H SDVN+V + SG SGSD
Sbjct: 202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYY-PSGDAFASGSD 260
Query: 291 DNLCKVWDRRC---LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
D C+++D R + + K + + G + +D GR L + D I +WD+ K
Sbjct: 261 DATCRLYDLRADREVAIYSKESIIF-----GASSVDFSLSGRLLFAGYNDYTINVWDVLK 315
Query: 348 MS 349
S
Sbjct: 316 GS 317
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES------GH 283
+ S+++ G +GS D +YDL A++ + I + S + FG S G
Sbjct: 243 VNSVRYYPSGDAFASGSDDATCRLYDLRADR-EVAIYSKES----IIFGASSVDFSLSGR 297
Query: 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
L+++G +D VWD +KG +L GH ++ + DG S D +++W
Sbjct: 298 LLFAGYNDYTINVWDV----LKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 9/115 (7%)
Query: 235 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG---DESGHLIYSGSDD 291
F+ +++ S D ++D+E+ +L H +DV +C E+G+ SG D
Sbjct: 162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV--LCLDLAPSETGNTFVSGGCD 219
Query: 292 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
VWD R G+ H + + G S D +L+D+R
Sbjct: 220 KKAMVWDMR----SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 228 FGIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFGDESGHLIY 286
FG S+ FS GR L AG +D I V+D L+ +++S+ + H + V+T+ + G
Sbjct: 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI-LFGHENRVSTLRVSPD-GTAFC 342
Query: 287 SGSDDNLCKVW 297
SGS D+ +VW
Sbjct: 343 SGSWDHTLRVW 353
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/229 (20%), Positives = 98/229 (42%), Gaps = 18/229 (7%)
Query: 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL---RWTVTDTSLS 178
+TT++ +S DG+ V G + ++R+++ + L L R + +
Sbjct: 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-------KTGALLNVLNFHRAPIVSVKWN 158
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
D H++ + + + +V SGT+ + E + G S G+ +++ D
Sbjct: 159 KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV-DVEWVDD 217
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298
+ ++ G I+VY + + +++ H ++ + F D + L+ S SDD ++W
Sbjct: 218 DKFVIPGPKG-AIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWH 275
Query: 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
G GH + I GD + +IS D +++LW +++
Sbjct: 276 GG----NGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVRLWSLKQ 319
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG---DESGHLIY 286
I S K DG L+ G + ++DL A + RI A + C+ + +
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAP--TPRIKAELTSSAPACYALAISPDSKVCF 157
Query: 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
S D VWD + + GH +G + ID DG L + G D ++ WD+R
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQ----FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Query: 347 K 347
+
Sbjct: 214 E 214
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 246 SSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 302
+ D + ++D +N K S + AHT++VN + F S ++ +GS D +WD R L
Sbjct: 247 ADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 306
Query: 303 NVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353
+K H + I + S + L S+G D+ + +WD+ K+ S
Sbjct: 307 KLK---LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS 355
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG------DESGHLIY-----SGSD 290
L++ S D I ++D+ A +++ D T+ G D S HL++ S +D
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVV----DAKTIFTGHTAVVEDVSWHLLHESLFGSVAD 248
Query: 291 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKM 348
D +WD R N KP+ + H + + ++++ G D+ + LWD+R +
Sbjct: 249 DQKLMIWDTRSNNT-SKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 306
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 246 SSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 302
+ D + ++D +N K S + AHT++VN + F S ++ +GS D +WD R L
Sbjct: 249 ADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 303 NVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354
+K H + I + S + L S+G D+ + +WD+ K+ S
Sbjct: 309 KLK---LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSA 358
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD-- 298
L GS+D + ++DL KL L +H ++ V + + ++ S D VWD
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 299 -----RRCLNVKGKPAGVLM---GHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDI 345
+ + + P +L GH I+ + ++I S +D +++W +
Sbjct: 351 KIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 246 SSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 302
+ D + ++D +N K S + AHT++VN + F S ++ +GS D +WD R L
Sbjct: 249 ADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 303 NVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354
+K H + I + S + L S+G D+ + +WD+ K+ S
Sbjct: 309 KLK---LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSA 358
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 321
++++ H + V + E G L++S S D+ VW ++ G+ G L GH I
Sbjct: 25 AIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVW----YSLNGERLGTLDGHTGTIWS 79
Query: 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360
ID +Y ++ D +IKLWD+ SN C ++S
Sbjct: 80 IDVDCFTKYCVTGSADYSIKLWDV----SNGQCVATWKS 114
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHL 184
A V+ +S G +AG + +I YDV ++ D+ KS ++D SPD +
Sbjct: 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS----ISDMQFSPDLTYF 233
Query: 185 VYASMSPIVHIVDVGS 200
+ +S +VDV +
Sbjct: 234 ITSSRDTNSFLVDVST 249
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 21/220 (9%)
Query: 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV--TDTSLSPDQRHLVYASMSP 191
A G + V+G +R++D+++G + + TV D + +++V S
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227
Query: 192 IVHIVDVGSGTMESLANVTEIHD-GLDFSAADDGGYSFGIF-----SLK-FSTDGRELVA 244
+H+ + + S+ + E HD L F ++ Y G+ S++ S G +V+
Sbjct: 228 TLHVWKLPKES--SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVS 285
Query: 245 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 304
GS D+ + V+D+ K + HT + + + E I S S D ++WD
Sbjct: 286 GSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI-SASXDTTIRIWDLE---- 340
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
G+ L GH + + R ++L+S D +I+ WD
Sbjct: 341 NGELXYTLQGHTALVGLL--RLSDKFLVSAAADGSIRGWD 378
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 246 SSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 302
+ D + ++D N K S + AHT++VN + F S ++ +GS D +WD R L
Sbjct: 251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310
Query: 303 NVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353
+K H + I + S + L S+G D+ + +WD+ K+ S
Sbjct: 311 KLK---LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLC 294
L++ S D I ++D+ A R++ HT+ V V + L S +DD
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 295 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKM 348
+WD R N KP+ + H + + ++++ G D+ + LWD+R +
Sbjct: 257 MIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 246 SSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 302
+ D + ++D N K S + AHT++VN + F S ++ +GS D +WD R L
Sbjct: 253 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 312
Query: 303 NVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353
+K H + I + S + L S+G D+ + +WD+ K+ S
Sbjct: 313 KLK---LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 361
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLC 294
L++ S D I ++D+ A R++ HT+ V V + L S +DD
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 295 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKM 348
+WD R N KP+ + H + + ++++ G D+ + LWD+R +
Sbjct: 259 MIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 312
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ ++ + G + V+GS D CI V+DL + AH + V V + S S
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS 189
Query: 290 DDNLCKVWDRRC 301
+DN +WD RC
Sbjct: 190 EDNRILLWDTRC 201
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 246 SSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 302
+ D + ++D N K S + AHT++VN + F S ++ +GS D +WD R L
Sbjct: 255 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 314
Query: 303 NVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353
+K H + I + S + L S+G D+ + +WD+ K+ S
Sbjct: 315 KLK---LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 363
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLC 294
L++ S D I ++D+ A R++ HT+ V V + L S +DD
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 295 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKM 348
+WD R N KP+ + H + + ++++ G D+ + LWD+R +
Sbjct: 261 MIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 314
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDES 281
G++ + S+ FS D R++V+ S D I +++ +S H V+ V F +
Sbjct: 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529
Query: 282 GH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 340
I S S D KVW+ ++ L GH ++ + DG S GKD +
Sbjct: 530 LQPTIVSASWDKTVKVWNLSNCKLRS----TLAGHTGYVSTVAVSPDGSLCASGGKDGVV 585
Query: 341 KLWDI 345
LWD+
Sbjct: 586 LLWDL 590
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 41/228 (17%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQ------KDILAKSLRWTVTDTSLSPDQRHLV 185
S+DG ++G ++R++D+ G + KD+L+ + S D R +V
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLS---------VAFSLDNRQIV 488
Query: 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE--LV 243
AS + + + +++ E G+ + ++FS + + +V
Sbjct: 489 SASRDRTIKLWNTLGECKYTISEGGE-------------GHRDWVSCVRFSPNTLQPTIV 535
Query: 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 303
+ S D + V++L KL + HT V+TV + G L SG D + +WD
Sbjct: 536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD-GSLCASGGKDGVVLLWDL---- 590
Query: 304 VKGKPAGVLMGHLEGITFIDSR--GDGRYLISNGKDQAIKLWDIRKMS 349
+GK + LE + I + RY + + IK+WD+ S
Sbjct: 591 AEGKK----LYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKS 634
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + S+DG+ ++GS D + ++DL A + R + HT DV +V F ++ +
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 285 IYSGSDDNLCKVWD 298
+ S S D K+W+
Sbjct: 488 V-SASRDRTIKLWN 500
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV----LMGHLEGITFI 322
AHT V + ++ +I S S D +W L K GV L GH + +
Sbjct: 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWK---LTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 323 DSRGDGRYLISNGKDQAIKLWDI 345
DG++ +S D ++LWD+
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDL 459
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 21/220 (9%)
Query: 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV--TDTSLSPDQRHLVYASMSP 191
A G + V+G +R++D+++G + + TV D + +++V S
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227
Query: 192 IVHIVDVGSGTMESLANVTEIHD-GLDFSAADDGGYSFGIF-----SLK-FSTDGRELVA 244
+H+ + + S+ + E HD L F ++ Y G+ S++ S G +V+
Sbjct: 228 TLHVWKLPKES--SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 285
Query: 245 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 304
GS D+ + V+D+ K + HT + + + E I S S D ++WD
Sbjct: 286 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI-SASMDTTIRIWDLE---- 340
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
G+ L GH + + R ++L+S D +I+ WD
Sbjct: 341 NGELMYTLQGHTALVGLL--RLSDKFLVSAAADGSIRGWD 378
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 30/227 (13%)
Query: 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184
SR + ++ G+L + +IRI+ E I K +L++ + TV + SP +L
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL 76
Query: 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244
AS I E + + G+ + S+ ++ G L
Sbjct: 77 ASASFDATTCIWKKNQDDFECVTTLE--------------GHENEVKSVAWAPSGNLLAT 122
Query: 245 GSSDDCIYVY--DLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVW---- 297
S D ++V+ D E + +L +HT DV V + S L+ S S D+ K++
Sbjct: 123 CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW-HPSQELLASASYDDTVKLYREEE 181
Query: 298 -DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
D C L GH + + G+ L S D+ +++W
Sbjct: 182 DDWVC-------CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-------LRILAHTSDVNTVCFGDESGH 283
FS K + D L++GS D + ++ L + + + H V+ + E+
Sbjct: 31 FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90
Query: 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
I S D L ++WD R G +GH + + D R ++S G ++ IKLW
Sbjct: 91 AISSSWDKTL-RLWDLRT----GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Query: 344 DI 345
+I
Sbjct: 146 NI 147
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL--EANKLSLRILAHTSDVNTVCFGD--E 280
G+ ++S+ FS D R++++ ++ I ++++ E S H+ V+ V + +
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175
Query: 281 SGHLIYSGSDDNLCKVWDRR--CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ 338
S + + + WD R N + H + + +G+Y+ + GKD+
Sbjct: 176 SANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDK 235
Query: 339 AIKLWDIRKMS 349
+ +WDI ++
Sbjct: 236 KLLIWDILNLT 246
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 279 DESGHLIYSGSDDNLCKVW---DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335
+E ++ SGS D +W + G P L GH ++ + + + IS+
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 336 KDQAIKLWDIR 346
D+ ++LWD+R
Sbjct: 96 WDKTLRLWDLR 106
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
I S+ + +G L G+S + ++D++ K + +H++ V ++ + + +++ SGS
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGS 217
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
D R V L GH + + + DGR+L S G D + +W
Sbjct: 218 RSGHIHHHDVR---VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 30/186 (16%)
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
P + +S A++ +G+ G +++++++DV++ K +++ + S R SLS
Sbjct: 157 PGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQ-KRLRNMTSHSAR----VGSLS 207
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
+ L S S +H DV V E H A G+S + L+++ D
Sbjct: 208 WNSYILSSGSRSGHIHHHDV---------RVAEHH------VATLSGHSQEVCGLRWAPD 252
Query: 239 GRELVAGSSDDCIYVYDL---EANKLSLRILA-HTSDVNTVCFGDESGHLIYS--GSDDN 292
GR L +G +D+ + V+ E + L+ H V V + +++ + G+ D
Sbjct: 253 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 312
Query: 293 LCKVWD 298
++W+
Sbjct: 313 HIRIWN 318
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
I S+ + +G L G+S + ++D++ K + +H++ V ++ + + +++ SGS
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGS 206
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
D R V L GH + + + DGR+L S G D + +W
Sbjct: 207 RSGHIHHHDVR---VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 30/186 (16%)
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
P + +S A++ +G+ G +++++++DV++ K +++ + S R SLS
Sbjct: 146 PGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQ-KRLRNMTSHSAR----VGSLS 196
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
+ L S S +H DV V E H A G+S + L+++ D
Sbjct: 197 WNSYILSSGSRSGHIHHHDV---------RVAEHH------VATLSGHSQEVCGLRWAPD 241
Query: 239 GRELVAGSSDDCIYVYDL---EANKLSLRILA-HTSDVNTVCFGDESGHLIYS--GSDDN 292
GR L +G +D+ + V+ E + L+ H V V + +++ + G+ D
Sbjct: 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 301
Query: 293 LCKVWD 298
++W+
Sbjct: 302 HIRIWN 307
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 76/192 (39%), Gaps = 32/192 (16%)
Query: 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA------------DDG 224
++ QR ++ S P H DV S ++ SL I D +
Sbjct: 187 VTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH 246
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD--------VNTVC 276
G+ I S+KF DG+ GS D ++D+ L++ D V +V
Sbjct: 247 GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH-QLQVYNREPDRNDNELPIVTSVA 305
Query: 277 FGDESGHLIYSGSDDNLCKVWD----RRCLNVKGKPAGVLMGHLEG-ITFIDSRGDGRYL 331
F SG L+++G + C VWD LN+ G L EG I+ + DG L
Sbjct: 306 F-SISGRLLFAGYSNGDCYVWDTLLAEMVLNL-----GTLQNSHEGRISCLGLSSDGSAL 359
Query: 332 ISNGKDQAIKLW 343
+ D+ +K+W
Sbjct: 360 CTGSWDKNLKIW 371
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRILA------HTSDVNTVCFGDESGHLIYSGSDDNLCK 295
L+ GS D ++D+ + + I HT+DV ++ + ++ SGS D +
Sbjct: 173 LITGSGDQTCVLWDVTTGQ-RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231
Query: 296 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
+WD R + + GH I + DG+ + D +L+D+R
Sbjct: 232 LWDLR---ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285
+S +F L +S DG ++ + S+D I ++++ K+ I T D+ +I
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR------IEDQQLGII 291
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAG----VLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341
++ L + +N G V GH + IT + S DG+ L S + I
Sbjct: 292 WT--KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349
Query: 342 LWDIRKMSSN 351
WDI SN
Sbjct: 350 SWDISTGISN 359
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+++GS D+ + +++ K HT V++V + + G L S D +++
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY-NPDGSLFASTGGDGTIVLYN--- 218
Query: 302 LNVKGKPAGVL-------MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354
V G GV + H + + DG + S D+ IK+W++ + +
Sbjct: 219 -GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277
Query: 355 NLGFR 359
+G R
Sbjct: 278 PVGTR 282
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 18/125 (14%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCFGDESGHLI 285
I S+ FS +G LVA + Y + AN L HT+ V V + ++ L
Sbjct: 494 ITSVAFSNNGAFLVATDQSRKVIPYSV-ANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 552
Query: 286 YSGSDDNLCKVWDRR-----CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 340
+GS DN VW+ + +KG A M + + +++ ++S G+D I
Sbjct: 553 -TGSLDNSVIVWNMNKPSDHPIIIKGAHA---MSSVNSVIWLNET----TIVSAGQDSNI 604
Query: 341 KLWDI 345
K W++
Sbjct: 605 KFWNV 609
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
I S+ + +G L G+S + ++D++ K + +H++ V ++ + + +++ SGS
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGS 126
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
D R V L GH + + + DGR+L S G D + +W
Sbjct: 127 RSGHIHHHDVR---VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 30/186 (16%)
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
P + +S A++ +G+ G +++++++DV++ K +++ + S R SLS
Sbjct: 66 PGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQ-KRLRNMTSHSAR----VGSLS 116
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
+ L S S +H DV V E H A G+S + L+++ D
Sbjct: 117 WNSYILSSGSRSGHIHHHDV---------RVAEHH------VATLSGHSQEVCGLRWAPD 161
Query: 239 GRELVAGSSDDCIYVYDL---EANKLSLRILA-HTSDVNTVCFGDESGHLIYS--GSDDN 292
GR L +G +D+ + V+ E + L+ H V V + +++ + G+ D
Sbjct: 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 221
Query: 293 LCKVWD 298
++W+
Sbjct: 222 HIRIWN 227
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 11/141 (7%)
Query: 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNT 274
+DF A D S + K +++GS D + +++ E N L H V
Sbjct: 91 VDFEAHPDYIRSIAVHPTK-----PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID--SRGDGRYLI 332
V F + SG D KVW L + G G+ ++D D Y+I
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVW---SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 333 SNGKDQAIKLWDIRKMSSNAS 353
+ D IK+WD + S A+
Sbjct: 203 TASDDLTIKIWDYQTKSCVAT 223
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
+ + SDD K+WD + + L GH+ ++F +IS +D +K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 345 IRKMSSNASCNLGFR 359
+ N+G
Sbjct: 257 SSTYKVEKTLNVGLE 271
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 297
D ++ S D I ++D + + H S+V+ F + +I SGS+D K+W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIW 255
Query: 298 D------RRCLNVKGKPAGVLMGHLEGITFIDSRG--DGRYLISNGKDQ 338
+ + LNV + + + H G + G +G ++S G D+
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 11/141 (7%)
Query: 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNT 274
+DF A D S + K +++GS D + +++ E N L H V
Sbjct: 91 VDFEAHPDYIRSIAVHPTK-----PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID--SRGDGRYLI 332
V F + SG D KVW L + G G+ ++D D Y+I
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVW---SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 333 SNGKDQAIKLWDIRKMSSNAS 353
+ D IK+WD + S A+
Sbjct: 203 TASDDLTIKIWDYQTKSCVAT 223
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
+ + SDD K+WD + + L GH+ ++F +IS +D +K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 345 IRKMSSNASCNLGFR 359
+ N+G
Sbjct: 257 SSTYKVEKTLNVGLE 271
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 297
D ++ S D I ++D + + H S+V+ F + +I SGS+D K+W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIW 255
Query: 298 D------RRCLNVKGKPAGVLMGHLEGITFIDSRG--DGRYLISNGKDQ 338
+ + LNV + + + H G + G +G ++S G D+
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Query: 242 LVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300
+++GS D + +++ E N L H V V F + SG D KVW
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW--- 168
Query: 301 CLNVKGKPAGVLMGHLEGITFID--SRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354
L + G G+ ++D D Y+I+ D IK+WD + S A+
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
+ SDD K+WD + + L GH+ ++F +IS +D +K+W+
Sbjct: 203 TASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Query: 347 KMSSNASCNLGFR 359
+ N+G
Sbjct: 259 TYKVEKTLNVGLE 271
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 297
D ++ S D I ++D + + H S+V+ F + +I SGS+D K+W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIW 255
Query: 298 D------RRCLNVKGKPAGVLMGHLEG-ITFIDSRGD-GRYLISNGKDQ 338
+ + LNV + + + H G +I S D G ++S G D+
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV--CFGDESGHLIYS 287
+ +L +DG + V+G D + V+DL + AH+S+VN V C G ++ + S
Sbjct: 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT--IFLS 199
Query: 288 GSDDNLCKVWDRRCLNVKGKPA 309
+D +WD R K KPA
Sbjct: 200 CGEDGRILLWDTR----KPKPA 217
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Query: 242 LVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300
+++GS D + +++ E N L H V V F + SG D KVW
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW--- 168
Query: 301 CLNVKGKPAGVLMGHLEGITFID--SRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354
L + G G+ ++D D Y+I+ D IK+WD + S A+
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
+ + SDD K+WD + + L GH+ ++F +IS +D +K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 345 IRKMSSNASCNLGFR 359
+ N+G
Sbjct: 257 SSTYKVEKTLNVGLE 271
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD--- 298
++ S D I ++D + + H S+V+ F + +I SGS+D K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIWNSST 259
Query: 299 ---RRCLNVKGKPAGVLMGHLEG-ITFIDSRGD-GRYLISNGKDQ 338
+ LNV + + + H G +I S D G ++S G D+
Sbjct: 260 YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 225 GYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT-VCFGDESG 282
G I LKF+ + + A S + + D + N LR+ A + +N C D S
Sbjct: 162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN--ILRVFASSDTINIWFCSLDVSA 219
Query: 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIK 341
+ DN+ V LN+ GK L H + +T + + ++ DQ +K
Sbjct: 220 SSRMVVTGDNVGNV---ILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 342 LWDIRKMSSNAS 353
+WD+R++ AS
Sbjct: 277 IWDLRQVRGKAS 288
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 225 GYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT-VCFGDESG 282
G I LKF+ + + A S + + D + N LR+ A + +N C D S
Sbjct: 162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN--ILRVFASSDTINIWFCSLDVSA 219
Query: 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIK 341
+ DN+ V LN+ GK L H + +T + + ++ DQ +K
Sbjct: 220 SSRMVVTGDNVGNV---ILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 342 LWDIRKMSSNAS 353
+WD+R++ AS
Sbjct: 277 IWDLRQVRGKAS 288
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 225 GYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT-VCFGDESG 282
G I LKF+ + + A S + + D + N LR+ A + +N C D S
Sbjct: 163 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN--ILRVFASSDTINIWFCSLDVSA 220
Query: 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIK 341
+ DN+ V LN+ GK L H + +T + + ++ DQ +K
Sbjct: 221 SSRMVVTGDNVGNV---ILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 277
Query: 342 LWDIRKMSSNAS 353
+WD+R++ AS
Sbjct: 278 IWDLRQVRGKAS 289
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 21/166 (12%)
Query: 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS---TDGRELVAGSSDDCIYV 253
D G T S ++ D AD + ++S S T + G+ + +
Sbjct: 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 254 YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR----CLNV----K 305
DL++ S + H ++ V + +++ + S D+ K+WD R CL
Sbjct: 171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230
Query: 306 GKPAGVLM-------GHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
GK + + G + G+ F DG +L++ G D ++LW+
Sbjct: 231 GKKSQAVESANTAHNGKVNGLCFTS---DGLHLLTVGTDNRMRLWN 273
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 60/176 (34%), Gaps = 55/176 (31%)
Query: 229 GIFSLKFS-TDGRELVAGSSDDCIYVYDLE-ANKLSLRIL------------AHTSDVNT 274
GI +L +GR +++G SD I +YDLE +++ S H V T
Sbjct: 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVET 104
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNV------------------------------ 304
V + + S S D KVWD L
Sbjct: 105 VQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTR 164
Query: 305 ----------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMS 349
G + +L GH + I + Y+++ D +KLWD+R+ S
Sbjct: 165 GPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS 220
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH-LIYSG 288
+ + +S DG ++ S D ++DL +N+ +++I H + V T+ + + + +G
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-AIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 289 SDDNLCKVWDRRCLN 303
S D K WD R N
Sbjct: 148 SWDKTLKFWDTRSSN 162
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW---DRRCLNVKGKPAGVLMGHLEGITF 321
+ HT+ V + + + ++I SGS+D VW D + +P L GH + +
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 322 IDSRGDGR-YLISNGKDQAIKLWDI 345
+ + L+S G D I +WD+
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDV 161
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 24/165 (14%)
Query: 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCI 251
+ I D+ T ES +N T + G S+ D+ + SL ++ + A + S +
Sbjct: 138 IFIWDMNKCT-ESPSNYTPLTPGQSMSSVDE------VISLAWNQSLAHVFASAGSSNFA 190
Query: 252 YVYDLEANKLSLRILAHTS-------DVNTVCFGDESGHLIYS--GSD-DNLCKVWDRRC 301
++DL+A K + L++TS ++ V + ++ + + GSD D +WD R
Sbjct: 191 SIWDLKAKKEVIH-LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249
Query: 302 LNVKGKPAGVL-MGHLEGITFID-SRGDGRYLISNGKDQAIKLWD 344
N P L GH +GI +D D L+S+G+D + LW+
Sbjct: 250 ANT---PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325
+ H + +N + F +L+ S S D+ ++W+ + + GV GH + + D
Sbjct: 148 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYD 206
Query: 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
G ++S G D ++KLW +++S N SY+++ + P ++ + P
Sbjct: 207 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 258
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 187 ASMSPIVHIVDVGSGTMESLANVTE 211
S P+VH++DV SG ++SL N E
Sbjct: 1 GSHMPVVHVIDVESGNLQSLTNAIE 25
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325
+ H + +N + F +L+ S S D+ ++W+ + + GV GH + + D
Sbjct: 107 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYD 165
Query: 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
G ++S G D ++KLW +++S N SY+++ + P ++ + P
Sbjct: 166 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 217
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW---DRRCLNVKGKPAGVLMGHLEGITF 321
+ HT+ V + + + ++I SGS+D VW D + +P L GH + +
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 322 IDSRGDGR-YLISNGKDQAIKLWDI 345
+ + L+S G D I +WD+
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDV 161
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325
+ H + +N + F +L+ S S D+ ++W+ + + GV GH + + D
Sbjct: 112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYD 170
Query: 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
G ++S G D ++KLW +++S N SY+++ + P ++ + P
Sbjct: 171 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1OX4|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 187 ASMSPIVHIVDVGSGTMESLANVTE 211
S P+VH++DV SG ++SL N E
Sbjct: 1 GSHMPVVHVIDVESGNLQSLTNAIE 25
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325
+ H + +N + F +L+ S S D+ ++W+ + + GV GH + + D
Sbjct: 111 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYD 169
Query: 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
G ++S G D ++KLW +++S N SY+++ + P ++ + P
Sbjct: 170 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 221
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325
+ H + +N + F +L+ S S D+ ++W+ + + GV GH + + D
Sbjct: 111 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYD 169
Query: 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
G ++S G D ++KLW +++S N SY+++ + P ++ + P
Sbjct: 170 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 221
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 37/224 (16%)
Query: 164 LAKSLRWTVTDTSLSPDQRHLV----YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS 219
+ K +TV D P V +A + ++ + ++ G ++ L EI
Sbjct: 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL---REIEKAKPIK 69
Query: 220 AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFG 278
+FG SL+ R L G +++++LEA ++ + + H +N +
Sbjct: 70 CG-----TFGATSLQ----QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGI 120
Query: 279 DESGHL-----IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG--------ITFIDSR 325
G I +GS D KVWD R K P M ++G + F ++
Sbjct: 121 GGLGIGEGAPEIVTGSRDGTVKVWDPR---QKDDPVAN-MEPVQGENKRDCWTVAFGNAY 176
Query: 326 GDGRYLISNGKDQA-IKLWDIRKMSSNASCNL--GFRSYEWDYR 366
++ G D IKL+D+R M+ N+ G S E+D +
Sbjct: 177 NQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRK 220
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Query: 226 YSFGIFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRILA---HTSDVNTVCFGDE 280
+S GI + + +LV+ DD I V D A+K ++R +A HTS
Sbjct: 22 FSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS---------- 71
Query: 281 SGHLIYSGSDDNLCKVWDRRC---LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337
L+ +GS D+ +W + + ++ GH + + DG YL + +D
Sbjct: 72 ---LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD 128
Query: 338 QAIKLWDIRKMSSNASC 354
+++ +W+ + C
Sbjct: 129 KSVWIWETDESGEEYEC 145
>pdb|2RD7|A Chain A, Human Complement Membrane Attack Proteins Share A Common
Fold With Bacterial Cytolysins
Length = 367
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 226 YSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282
Y++G+++ KF D G + S IY Y L +K + L TS T CFG G
Sbjct: 200 YNYGMYA-KFINDYGTHYITSGSMGGIYEYILVIDKAKMESLGITSRDITTCFGGSLG 256
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDGRY 330
+N+VC+ E L++ G D + V G+ P L+GH + + S DG
Sbjct: 62 LNSVCYDSEKELLLFGGKDTXINGV---PLFATSGEDPLYTLIGHQGNVCSL-SFQDG-V 116
Query: 331 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390
+IS D+ K+W + N + + WD + + + + + L D+++ ++
Sbjct: 117 VISGSWDKTAKVWKEGSLVYNLQAH---NASVWDAKVVSF-SENKFLTASADKTIKLWQN 172
Query: 391 HSVLRTLIRCH 401
V++T H
Sbjct: 173 DKVIKTFSGIH 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,418,354
Number of Sequences: 62578
Number of extensions: 525665
Number of successful extensions: 1988
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1269
Number of HSP's gapped (non-prelim): 359
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)