Query 015438
Match_columns 407
No_of_seqs 552 out of 4232
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 06:18:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015438.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015438hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3.9E-44 8.4E-49 301.0 26.2 267 115-407 106-464 (480)
2 KOG0286 G-protein beta subunit 100.0 4.7E-42 1E-46 279.0 24.5 267 118-406 49-327 (343)
3 KOG0271 Notchless-like WD40 re 100.0 8E-41 1.7E-45 281.1 22.2 261 101-389 134-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-41 3.2E-46 288.9 17.9 255 107-389 200-458 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 7.7E-41 1.7E-45 284.6 20.9 256 122-407 173-443 (459)
6 KOG0279 G protein beta subunit 100.0 3.8E-37 8.3E-42 249.0 27.1 264 118-407 9-296 (315)
7 KOG0286 G-protein beta subunit 100.0 1.5E-36 3.2E-41 247.0 24.9 283 80-388 45-342 (343)
8 KOG0279 G protein beta subunit 100.0 3.1E-36 6.8E-41 243.7 24.1 250 115-389 54-311 (315)
9 KOG0263 Transcription initiati 100.0 1.7E-36 3.8E-41 277.1 24.4 209 119-351 446-654 (707)
10 KOG0263 Transcription initiati 100.0 4.7E-37 1E-41 280.8 19.9 251 117-392 371-650 (707)
11 KOG0645 WD40 repeat protein [G 100.0 1.1E-33 2.4E-38 228.1 30.0 249 117-390 7-260 (312)
12 KOG0265 U5 snRNP-specific prot 100.0 7.5E-34 1.6E-38 232.2 25.4 264 117-406 40-320 (338)
13 KOG0273 Beta-transducin family 100.0 3E-34 6.4E-39 247.6 23.6 252 124-388 235-520 (524)
14 KOG0284 Polyadenylation factor 100.0 1.9E-35 4.1E-40 250.7 15.5 255 108-389 122-378 (464)
15 KOG0284 Polyadenylation factor 100.0 7.5E-35 1.6E-39 247.1 18.0 256 123-406 95-362 (464)
16 KOG0295 WD40 repeat-containing 100.0 1.4E-33 3.1E-38 236.1 22.8 262 102-389 128-404 (406)
17 KOG0285 Pleiotropic regulator 100.0 2.6E-33 5.7E-38 234.0 22.0 249 112-389 139-387 (460)
18 KOG0291 WD40-repeat-containing 100.0 1.1E-32 2.4E-37 250.5 26.7 264 106-392 332-613 (893)
19 KOG0315 G-protein beta subunit 100.0 1.2E-32 2.6E-37 219.5 23.2 260 106-388 22-285 (311)
20 KOG0266 WD40 repeat-containing 100.0 2.8E-32 6.1E-37 255.0 28.6 260 122-405 157-433 (456)
21 KOG0282 mRNA splicing factor [ 100.0 1.4E-33 3E-38 244.4 17.9 258 108-389 198-503 (503)
22 KOG0315 G-protein beta subunit 100.0 3.2E-32 6.9E-37 217.1 23.0 213 116-351 75-293 (311)
23 KOG0285 Pleiotropic regulator 100.0 3.3E-32 7.2E-37 227.5 22.9 289 78-392 139-440 (460)
24 KOG0316 Conserved WD40 repeat- 100.0 9.9E-32 2.2E-36 212.6 23.2 265 112-405 5-281 (307)
25 KOG0266 WD40 repeat-containing 100.0 2.5E-31 5.4E-36 248.7 29.5 262 102-390 179-453 (456)
26 cd00200 WD40 WD40 domain, foun 100.0 3.7E-30 8.1E-35 227.8 31.2 261 118-406 3-273 (289)
27 PLN00181 protein SPA1-RELATED; 100.0 1.7E-30 3.7E-35 260.6 32.5 267 119-407 478-776 (793)
28 KOG0318 WD40 repeat stress pro 100.0 4.2E-30 9E-35 225.0 29.4 275 112-392 178-561 (603)
29 KOG0273 Beta-transducin family 100.0 9E-31 1.9E-35 226.2 24.6 266 112-407 167-465 (524)
30 KOG0295 WD40 repeat-containing 100.0 1.3E-31 2.7E-36 224.5 17.9 249 115-391 99-364 (406)
31 KOG0292 Vesicle coat complex C 100.0 3.4E-31 7.3E-36 244.6 22.5 260 106-391 33-321 (1202)
32 KOG0265 U5 snRNP-specific prot 100.0 1.1E-30 2.4E-35 213.7 22.5 261 101-386 66-333 (338)
33 KOG0281 Beta-TrCP (transducin 100.0 4.8E-32 1E-36 225.8 14.7 256 102-389 215-475 (499)
34 KOG0291 WD40-repeat-containing 100.0 3.8E-30 8.2E-35 234.1 27.5 243 124-390 265-549 (893)
35 KOG0645 WD40 repeat protein [G 100.0 1.3E-29 2.9E-34 204.6 25.9 244 121-389 58-309 (312)
36 KOG0276 Vesicle coat complex C 100.0 1.4E-30 3.1E-35 232.2 22.0 248 118-392 7-258 (794)
37 PTZ00421 coronin; Provisional 100.0 3.6E-29 7.7E-34 233.3 32.0 251 118-392 69-332 (493)
38 KOG1407 WD40 repeat protein [F 100.0 4.8E-30 1E-34 206.1 21.6 260 118-406 14-284 (313)
39 KOG0277 Peroxisomal targeting 100.0 1.7E-30 3.7E-35 207.8 18.1 244 124-389 60-307 (311)
40 KOG0296 Angio-associated migra 100.0 1.8E-29 3.8E-34 211.8 24.6 164 117-300 57-220 (399)
41 KOG0643 Translation initiation 100.0 2.7E-29 5.8E-34 202.4 23.7 259 117-407 3-300 (327)
42 KOG4283 Transcription-coupled 100.0 1E-29 2.2E-34 207.6 20.5 272 117-407 36-348 (397)
43 cd00200 WD40 WD40 domain, foun 100.0 1.2E-28 2.7E-33 218.1 29.1 259 103-389 30-289 (289)
44 KOG0319 WD40-repeat-containing 100.0 9.2E-30 2E-34 231.1 21.7 266 111-392 352-620 (775)
45 KOG0640 mRNA cleavage stimulat 100.0 1.1E-29 2.4E-34 208.8 19.8 255 116-389 104-381 (430)
46 KOG0306 WD40-repeat-containing 100.0 4.1E-29 8.9E-34 227.2 25.3 258 118-391 367-664 (888)
47 KOG0293 WD40 repeat-containing 100.0 2E-29 4.3E-34 214.6 21.7 291 74-392 208-514 (519)
48 KOG0313 Microtubule binding pr 100.0 2.9E-29 6.3E-34 211.5 21.9 273 112-392 132-419 (423)
49 KOG0318 WD40 repeat stress pro 100.0 4E-28 8.6E-33 212.6 29.3 283 98-406 33-332 (603)
50 KOG0293 WD40 repeat-containing 100.0 5E-29 1.1E-33 212.1 22.8 274 107-405 207-493 (519)
51 KOG0277 Peroxisomal targeting 100.0 3.9E-29 8.6E-34 200.0 20.7 240 127-389 11-263 (311)
52 KOG0276 Vesicle coat complex C 100.0 3.2E-29 6.8E-34 223.6 21.8 237 106-366 37-276 (794)
53 KOG0316 Conserved WD40 repeat- 100.0 1.3E-28 2.9E-33 194.9 22.0 262 100-390 35-298 (307)
54 PTZ00420 coronin; Provisional 100.0 7.4E-28 1.6E-32 225.5 30.7 251 116-391 66-334 (568)
55 KOG0282 mRNA splicing factor [ 100.0 3E-29 6.4E-34 217.6 19.6 247 73-344 197-503 (503)
56 KOG0772 Uncharacterized conser 100.0 5.6E-29 1.2E-33 217.4 21.0 287 110-405 153-468 (641)
57 KOG0283 WD40 repeat-containing 100.0 2.8E-29 6E-34 231.9 20.1 273 122-407 265-559 (712)
58 KOG0275 Conserved WD40 repeat- 100.0 8.8E-30 1.9E-34 210.6 13.5 248 122-389 211-507 (508)
59 KOG0310 Conserved WD40 repeat- 100.0 1.6E-28 3.5E-33 213.4 21.7 261 119-407 21-292 (487)
60 KOG0319 WD40-repeat-containing 100.0 7.3E-29 1.6E-33 225.4 20.4 227 100-347 383-620 (775)
61 PLN00181 protein SPA1-RELATED; 100.0 1.1E-27 2.5E-32 240.3 31.0 245 123-389 531-791 (793)
62 PTZ00421 coronin; Provisional 100.0 1.1E-27 2.5E-32 223.3 27.8 253 124-392 20-291 (493)
63 KOG0281 Beta-TrCP (transducin 100.0 1.7E-29 3.6E-34 210.7 13.6 229 123-390 196-427 (499)
64 KOG0292 Vesicle coat complex C 100.0 2.9E-28 6.2E-33 225.4 21.3 251 120-392 5-281 (1202)
65 KOG0300 WD40 repeat-containing 100.0 2.4E-28 5.1E-33 201.6 18.0 262 117-390 141-427 (481)
66 KOG0289 mRNA splicing factor [ 100.0 1.8E-27 3.9E-32 204.0 22.9 238 124-389 219-458 (506)
67 KOG2096 WD40 repeat protein [G 100.0 2.9E-27 6.3E-32 195.3 23.2 280 118-407 80-386 (420)
68 KOG0274 Cdc4 and related F-box 100.0 1.5E-27 3.3E-32 222.7 24.1 254 102-390 226-481 (537)
69 KOG0296 Angio-associated migra 100.0 6.5E-27 1.4E-31 196.4 24.8 220 102-346 84-398 (399)
70 KOG0305 Anaphase promoting com 100.0 2.7E-27 5.9E-32 213.2 23.9 264 100-391 193-461 (484)
71 KOG0264 Nucleosome remodeling 100.0 6.4E-28 1.4E-32 208.1 18.8 258 121-391 121-404 (422)
72 KOG0288 WD40 repeat protein Ti 100.0 1.1E-28 2.4E-33 210.1 13.9 276 105-406 156-443 (459)
73 KOG0289 mRNA splicing factor [ 100.0 4.6E-27 9.9E-32 201.5 23.4 263 102-388 239-503 (506)
74 KOG0313 Microtubule binding pr 100.0 2.5E-27 5.4E-32 199.9 21.0 222 103-347 168-419 (423)
75 KOG1446 Histone H3 (Lys4) meth 100.0 3.3E-26 7.2E-31 189.2 26.7 240 118-383 8-296 (311)
76 KOG0299 U3 snoRNP-associated p 100.0 5.1E-27 1.1E-31 202.6 22.5 268 117-407 135-438 (479)
77 KOG1407 WD40 repeat protein [F 100.0 6.4E-27 1.4E-31 188.1 21.5 250 102-382 40-292 (313)
78 PTZ00420 coronin; Provisional 100.0 3.4E-26 7.4E-31 214.4 28.5 231 142-390 50-292 (568)
79 KOG0643 Translation initiation 100.0 5.8E-26 1.2E-30 183.3 25.7 272 94-389 21-315 (327)
80 KOG0288 WD40 repeat protein Ti 100.0 1.4E-27 2.9E-32 203.5 16.3 283 77-389 162-459 (459)
81 KOG1332 Vesicle coat complex C 100.0 2.6E-27 5.6E-32 188.7 16.7 260 119-395 6-290 (299)
82 KOG0973 Histone transcription 100.0 7.9E-27 1.7E-31 221.1 22.9 266 120-389 9-353 (942)
83 KOG0641 WD40 repeat protein [G 100.0 2E-25 4.4E-30 176.0 25.8 259 124-405 32-330 (350)
84 KOG0275 Conserved WD40 repeat- 100.0 9.2E-28 2E-32 198.7 12.4 222 170-406 214-449 (508)
85 KOG0306 WD40-repeat-containing 99.9 9.1E-27 2E-31 212.1 18.6 208 119-347 449-665 (888)
86 KOG0310 Conserved WD40 repeat- 99.9 2E-26 4.4E-31 200.4 19.2 235 119-383 63-300 (487)
87 KOG0278 Serine/threonine kinas 99.9 4.4E-26 9.5E-31 182.3 18.8 263 115-391 5-297 (334)
88 KOG0278 Serine/threonine kinas 99.9 8.4E-27 1.8E-31 186.3 14.4 220 105-351 82-302 (334)
89 KOG0647 mRNA export protein (c 99.9 8.3E-26 1.8E-30 185.4 20.2 231 123-379 26-310 (347)
90 KOG0264 Nucleosome remodeling 99.9 4.8E-26 1E-30 196.6 19.7 218 116-347 169-405 (422)
91 KOG0305 Anaphase promoting com 99.9 1.2E-25 2.6E-30 202.6 22.7 245 128-406 181-443 (484)
92 KOG0641 WD40 repeat protein [G 99.9 5.2E-25 1.1E-29 173.7 23.2 246 120-389 85-347 (350)
93 KOG0268 Sof1-like rRNA process 99.9 5.1E-27 1.1E-31 196.9 12.6 269 106-407 48-328 (433)
94 KOG0308 Conserved WD40 repeat- 99.9 3.2E-26 6.9E-31 205.5 18.0 259 117-391 66-327 (735)
95 KOG0772 Uncharacterized conser 99.9 1.1E-25 2.4E-30 197.0 19.7 258 124-400 214-497 (641)
96 KOG1273 WD40 repeat protein [G 99.9 3.2E-25 6.9E-30 183.0 19.8 271 127-407 26-335 (405)
97 KOG0283 WD40 repeat-containing 99.9 3.1E-25 6.7E-30 205.3 21.9 207 115-347 360-577 (712)
98 KOG0640 mRNA cleavage stimulat 99.9 1.9E-25 4.2E-30 183.9 18.1 249 119-389 167-424 (430)
99 KOG0274 Cdc4 and related F-box 99.9 1.3E-24 2.7E-29 203.2 25.6 235 123-392 207-442 (537)
100 KOG0299 U3 snoRNP-associated p 99.9 5.9E-25 1.3E-29 190.0 20.6 233 121-380 199-443 (479)
101 KOG0300 WD40 repeat-containing 99.9 1.9E-24 4.1E-29 178.7 21.9 292 79-392 137-477 (481)
102 KOG0267 Microtubule severing p 99.9 9.9E-27 2.2E-31 211.0 9.2 242 118-387 22-263 (825)
103 KOG2055 WD40 repeat protein [G 99.9 4.1E-25 8.9E-30 191.0 18.7 314 46-391 189-512 (514)
104 KOG0268 Sof1-like rRNA process 99.9 1.4E-25 3E-30 188.3 15.3 260 101-393 86-347 (433)
105 KOG1036 Mitotic spindle checkp 99.9 1.2E-24 2.7E-29 179.2 20.0 229 124-382 13-294 (323)
106 KOG0646 WD40 repeat protein [G 99.9 1.4E-24 3E-29 188.0 21.0 222 122-355 79-316 (476)
107 KOG0294 WD40 repeat-containing 99.9 2.6E-24 5.6E-29 177.7 21.5 222 102-351 61-286 (362)
108 KOG0308 Conserved WD40 repeat- 99.9 2.6E-25 5.5E-30 199.7 15.4 217 129-365 29-261 (735)
109 KOG0302 Ribosome Assembly prot 99.9 1.4E-24 3E-29 183.3 18.5 214 121-350 148-382 (440)
110 KOG0269 WD40 repeat-containing 99.9 1.2E-24 2.6E-29 199.1 18.8 247 124-390 39-295 (839)
111 KOG1332 Vesicle coat complex C 99.9 3.7E-24 7.9E-29 170.8 17.1 217 115-346 47-286 (299)
112 KOG2055 WD40 repeat protein [G 99.9 1.8E-23 4E-28 180.9 22.2 262 124-405 213-493 (514)
113 KOG0973 Histone transcription 99.9 1.3E-23 2.7E-28 199.6 22.7 212 117-348 62-357 (942)
114 KOG0269 WD40 repeat-containing 99.9 1.5E-24 3.3E-29 198.4 15.0 236 126-384 89-333 (839)
115 KOG4328 WD40 protein [Function 99.9 1.3E-23 2.8E-28 181.6 19.8 261 117-392 179-451 (498)
116 KOG1539 WD repeat protein [Gen 99.9 8.5E-23 1.8E-27 188.5 25.9 291 93-392 171-649 (910)
117 KOG0639 Transducin-like enhanc 99.9 7.6E-24 1.7E-28 185.0 18.0 245 122-388 417-701 (705)
118 KOG0294 WD40 repeat-containing 99.9 5.8E-23 1.3E-27 169.7 21.4 243 116-392 35-282 (362)
119 KOG1274 WD40 repeat protein [G 99.9 1.7E-22 3.7E-27 188.4 26.6 259 121-406 10-282 (933)
120 KOG2445 Nuclear pore complex c 99.9 2.1E-22 4.6E-27 165.9 22.2 265 119-391 8-318 (361)
121 KOG1408 WD40 repeat protein [F 99.9 1.4E-22 3E-27 184.1 21.2 276 126-407 326-696 (1080)
122 KOG2919 Guanine nucleotide-bin 99.9 3.6E-22 7.8E-27 165.6 21.8 262 127-405 52-351 (406)
123 KOG0301 Phospholipase A2-activ 99.9 7.9E-23 1.7E-27 185.2 19.3 237 118-392 51-289 (745)
124 KOG0270 WD40 repeat-containing 99.9 1.1E-22 2.5E-27 175.2 18.9 244 128-392 177-450 (463)
125 KOG1446 Histone H3 (Lys4) meth 99.9 9.7E-22 2.1E-26 162.9 23.3 213 110-347 86-304 (311)
126 KOG0267 Microtubule severing p 99.9 2.6E-24 5.5E-29 195.5 8.8 198 116-337 62-259 (825)
127 KOG0301 Phospholipase A2-activ 99.9 2.7E-22 5.8E-27 181.7 19.6 241 117-392 7-250 (745)
128 KOG0650 WD40 repeat nucleolar 99.9 1.1E-21 2.3E-26 175.1 21.5 282 110-405 386-716 (733)
129 KOG0307 Vesicle coat complex C 99.9 5.1E-23 1.1E-27 196.4 13.9 248 124-392 64-328 (1049)
130 KOG4378 Nuclear protein COP1 [ 99.9 2.1E-22 4.6E-27 175.8 15.5 223 126-374 81-305 (673)
131 KOG0302 Ribosome Assembly prot 99.9 8E-22 1.7E-26 166.7 17.0 214 112-339 199-432 (440)
132 KOG1274 WD40 repeat protein [G 99.9 8.2E-21 1.8E-25 177.4 25.0 240 104-377 35-285 (933)
133 KOG0647 mRNA export protein (c 99.9 4.3E-21 9.2E-26 157.9 20.2 210 117-335 65-312 (347)
134 KOG1539 WD repeat protein [Gen 99.9 3.6E-21 7.9E-26 177.8 21.9 202 123-347 447-649 (910)
135 KOG1408 WD40 repeat protein [F 99.9 1.3E-21 2.8E-26 177.9 18.0 217 123-347 458-714 (1080)
136 KOG0646 WD40 repeat protein [G 99.9 3E-21 6.5E-26 167.5 19.4 232 137-392 51-308 (476)
137 KOG2048 WD40 repeat protein [G 99.9 2.8E-20 6E-25 168.4 25.9 228 122-373 67-302 (691)
138 KOG2048 WD40 repeat protein [G 99.9 2.6E-20 5.6E-25 168.6 25.6 242 123-392 24-276 (691)
139 KOG1007 WD repeat protein TSSC 99.9 3.2E-21 7E-26 157.7 17.8 264 118-404 57-340 (370)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5E-20 1.1E-24 164.9 27.2 243 118-393 25-281 (300)
141 KOG0321 WD40 repeat-containing 99.9 7.8E-21 1.7E-25 170.8 21.5 266 118-390 94-390 (720)
142 KOG2106 Uncharacterized conser 99.9 3E-20 6.4E-25 162.8 22.8 261 99-389 343-624 (626)
143 KOG4283 Transcription-coupled 99.9 1.1E-20 2.3E-25 155.1 18.8 219 167-391 41-276 (397)
144 KOG2919 Guanine nucleotide-bin 99.9 1.3E-20 2.8E-25 156.5 18.9 249 124-390 104-368 (406)
145 KOG1034 Transcriptional repres 99.9 3.9E-20 8.5E-25 153.9 21.2 254 118-389 32-381 (385)
146 KOG0270 WD40 repeat-containing 99.9 7E-21 1.5E-25 164.3 17.3 211 121-352 240-455 (463)
147 KOG2445 Nuclear pore complex c 99.9 1.4E-19 3.1E-24 149.4 24.0 241 102-346 33-318 (361)
148 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.3E-19 1.2E-23 158.3 29.8 244 136-407 1-261 (300)
149 KOG2096 WD40 repeat protein [G 99.9 1.3E-19 2.8E-24 150.3 22.7 290 78-389 74-400 (420)
150 KOG4378 Nuclear protein COP1 [ 99.9 1.6E-20 3.5E-25 164.1 18.1 275 101-404 9-303 (673)
151 KOG1063 RNA polymerase II elon 99.9 1.4E-20 3E-25 170.8 18.1 269 118-389 355-697 (764)
152 KOG0290 Conserved WD40 repeat- 99.9 3.6E-20 7.8E-25 151.7 16.9 212 121-350 93-322 (364)
153 KOG0321 WD40 repeat-containing 99.9 1.1E-19 2.5E-24 163.4 21.1 260 128-405 53-371 (720)
154 KOG2106 Uncharacterized conser 99.8 9.6E-19 2.1E-23 153.5 24.7 247 124-388 246-518 (626)
155 KOG1063 RNA polymerase II elon 99.8 4.4E-19 9.5E-24 161.1 22.7 253 119-392 262-649 (764)
156 KOG1272 WD40-repeat-containing 99.8 1.7E-21 3.7E-26 168.9 6.5 279 73-381 117-398 (545)
157 KOG0649 WD40 repeat protein [G 99.8 3.8E-19 8.2E-24 142.3 18.9 245 126-391 12-274 (325)
158 KOG0303 Actin-binding protein 99.8 4.1E-19 8.9E-24 151.3 18.8 242 135-393 43-296 (472)
159 KOG1007 WD repeat protein TSSC 99.8 4.8E-19 1E-23 145.0 18.3 209 122-347 121-362 (370)
160 KOG0639 Transducin-like enhanc 99.8 1.2E-19 2.6E-24 159.0 15.8 194 125-345 510-703 (705)
161 KOG0303 Actin-binding protein 99.8 9.4E-19 2E-23 149.1 20.1 213 119-351 76-299 (472)
162 KOG1034 Transcriptional repres 99.8 1.6E-19 3.5E-24 150.3 14.9 234 111-346 122-383 (385)
163 KOG1272 WD40-repeat-containing 99.8 2.5E-20 5.4E-25 161.8 10.4 233 124-390 129-361 (545)
164 KOG1036 Mitotic spindle checkp 99.8 2.4E-18 5.2E-23 142.3 21.1 206 106-336 76-294 (323)
165 KOG0642 Cell-cycle nuclear pro 99.8 2.5E-19 5.4E-24 159.2 16.3 224 118-353 288-568 (577)
166 KOG1587 Cytoplasmic dynein int 99.8 2.5E-18 5.5E-23 159.9 23.8 277 105-391 223-516 (555)
167 KOG1273 WD40 repeat protein [G 99.8 5.9E-19 1.3E-23 146.2 16.4 194 172-391 26-226 (405)
168 KOG0322 G-protein beta subunit 99.8 1.1E-18 2.4E-23 141.2 16.9 269 112-389 2-321 (323)
169 KOG1523 Actin-related protein 99.8 3.1E-18 6.6E-23 142.4 20.0 251 123-391 9-278 (361)
170 KOG0307 Vesicle coat complex C 99.8 1.8E-19 4E-24 172.4 12.5 212 119-349 111-330 (1049)
171 KOG1538 Uncharacterized conser 99.8 1.6E-18 3.6E-23 156.8 17.3 260 95-389 24-291 (1081)
172 KOG1517 Guanine nucleotide bin 99.8 1.2E-17 2.6E-22 158.5 23.3 264 122-393 1062-1335(1387)
173 KOG4328 WD40 protein [Function 99.8 3.5E-18 7.6E-23 148.3 17.5 254 116-390 226-494 (498)
174 KOG0644 Uncharacterized conser 99.8 3.5E-19 7.7E-24 164.8 12.0 238 119-388 185-465 (1113)
175 KOG2110 Uncharacterized conser 99.8 3.2E-17 6.9E-22 138.9 22.7 236 124-392 5-249 (391)
176 KOG1188 WD40 repeat protein [G 99.8 5E-18 1.1E-22 142.2 16.9 200 137-353 41-249 (376)
177 KOG1009 Chromatin assembly com 99.8 1.1E-17 2.4E-22 143.2 19.1 175 124-299 13-194 (434)
178 KOG4227 WD40 repeat protein [G 99.8 6.7E-18 1.5E-22 143.9 17.6 215 119-350 51-278 (609)
179 KOG0290 Conserved WD40 repeat- 99.8 2.6E-17 5.7E-22 135.1 20.2 254 125-395 45-322 (364)
180 KOG0771 Prolactin regulatory e 99.8 3.7E-18 8.1E-23 147.0 15.8 197 128-347 148-355 (398)
181 KOG1310 WD40 repeat protein [G 99.8 1.1E-17 2.3E-22 148.4 16.3 234 115-356 41-313 (758)
182 KOG1445 Tumor-specific antigen 99.8 9E-18 2E-22 151.3 15.0 205 132-349 587-801 (1012)
183 PRK01742 tolB translocation pr 99.8 1.3E-16 2.7E-21 149.3 23.4 202 113-346 192-401 (429)
184 KOG1538 Uncharacterized conser 99.8 5.3E-17 1.1E-21 147.2 18.8 246 126-407 14-276 (1081)
185 KOG1445 Tumor-specific antigen 99.8 3.9E-18 8.4E-23 153.6 10.9 198 177-392 587-799 (1012)
186 KOG1524 WD40 repeat-containing 99.8 5.1E-17 1.1E-21 143.8 17.2 249 122-406 12-268 (737)
187 KOG1188 WD40 repeat protein [G 99.8 4.2E-17 9.2E-22 136.7 15.7 219 114-346 60-346 (376)
188 KOG1009 Chromatin assembly com 99.8 2E-17 4.3E-22 141.6 13.7 169 170-350 14-199 (434)
189 PRK11028 6-phosphogluconolacto 99.8 1.3E-15 2.7E-20 138.2 26.6 250 124-391 34-304 (330)
190 KOG2394 WD40 protein DMR-N9 [G 99.7 3.3E-17 7.2E-22 145.0 15.1 212 134-351 183-457 (636)
191 KOG0650 WD40 repeat nucleolar 99.7 3.8E-17 8.2E-22 146.4 15.2 203 120-343 517-732 (733)
192 KOG2139 WD40 repeat protein [G 99.7 3.6E-16 7.8E-21 132.2 19.3 254 124-391 98-376 (445)
193 COG2319 FOG: WD40 repeat [Gene 99.7 2.8E-15 6.1E-20 140.3 27.8 244 119-390 60-313 (466)
194 KOG1963 WD40 repeat protein [G 99.7 5E-16 1.1E-20 145.3 21.8 254 121-392 202-539 (792)
195 KOG0771 Prolactin regulatory e 99.7 1.2E-16 2.6E-21 137.8 15.2 196 173-389 148-352 (398)
196 COG2319 FOG: WD40 repeat [Gene 99.7 7.8E-15 1.7E-19 137.3 28.8 263 103-392 86-360 (466)
197 KOG1524 WD40 repeat-containing 99.7 4.4E-16 9.5E-21 138.0 16.3 201 137-382 76-276 (737)
198 KOG4227 WD40 repeat protein [G 99.7 8.1E-16 1.8E-20 131.3 16.9 217 165-393 52-276 (609)
199 KOG2394 WD40 protein DMR-N9 [G 99.7 3.9E-15 8.4E-20 132.1 21.3 226 125-372 124-384 (636)
200 KOG2110 Uncharacterized conser 99.7 1.5E-14 3.2E-19 123.0 23.9 196 127-349 49-251 (391)
201 KOG0322 G-protein beta subunit 99.7 2E-15 4.4E-20 122.5 17.4 227 107-345 38-322 (323)
202 PRK03629 tolB translocation pr 99.7 2.5E-14 5.4E-19 133.6 27.2 205 114-347 188-407 (429)
203 KOG1310 WD40 repeat protein [G 99.7 2.5E-16 5.3E-21 139.9 12.6 214 164-392 45-304 (758)
204 KOG1517 Guanine nucleotide bin 99.7 1.2E-14 2.5E-19 138.6 23.9 270 106-393 1088-1383(1387)
205 KOG0649 WD40 repeat protein [G 99.7 1.8E-14 4E-19 115.7 20.8 198 120-347 58-275 (325)
206 PRK11028 6-phosphogluconolacto 99.7 5.1E-14 1.1E-18 127.7 25.2 209 125-347 80-305 (330)
207 KOG0642 Cell-cycle nuclear pro 99.7 2E-15 4.4E-20 134.6 15.2 197 114-316 334-573 (577)
208 PRK05137 tolB translocation pr 99.7 7.6E-14 1.7E-18 131.0 26.5 208 113-349 190-415 (435)
209 PRK04922 tolB translocation pr 99.7 6.9E-14 1.5E-18 131.1 25.4 206 113-347 192-412 (433)
210 KOG3881 Uncharacterized conser 99.7 1.2E-14 2.7E-19 124.2 18.1 217 123-354 104-328 (412)
211 KOG2111 Uncharacterized conser 99.6 5.9E-14 1.3E-18 117.1 20.5 237 127-392 8-257 (346)
212 KOG2111 Uncharacterized conser 99.6 5.1E-13 1.1E-17 111.5 25.9 178 146-349 75-259 (346)
213 KOG2139 WD40 repeat protein [G 99.6 2.3E-13 4.9E-18 115.5 24.0 205 123-348 139-385 (445)
214 KOG1240 Protein kinase contain 99.6 5.2E-14 1.1E-18 136.2 22.7 261 119-392 1043-1335(1431)
215 PF08662 eIF2A: Eukaryotic tra 99.6 4.8E-14 1E-18 116.4 19.6 153 173-351 9-183 (194)
216 KOG1587 Cytoplasmic dynein int 99.6 2.1E-14 4.5E-19 134.0 19.1 218 120-347 287-517 (555)
217 KOG1523 Actin-related protein 99.6 3.1E-14 6.8E-19 118.8 16.8 209 114-339 45-271 (361)
218 KOG1963 WD40 repeat protein [G 99.6 4.6E-13 9.9E-18 125.8 26.2 272 102-392 35-376 (792)
219 PRK01742 tolB translocation pr 99.6 1.9E-14 4.1E-19 134.7 17.3 200 145-380 183-389 (429)
220 KOG1334 WD40 repeat protein [G 99.6 6.5E-15 1.4E-19 129.2 13.0 213 116-344 134-364 (559)
221 PRK02889 tolB translocation pr 99.6 3.8E-13 8.3E-18 125.7 25.8 204 113-345 184-402 (427)
222 PF08662 eIF2A: Eukaryotic tra 99.6 1.6E-13 3.4E-18 113.3 19.4 156 128-311 9-185 (194)
223 PRK03629 tolB translocation pr 99.6 5.6E-13 1.2E-17 124.5 24.0 200 147-380 180-391 (429)
224 KOG0644 Uncharacterized conser 99.6 7.1E-15 1.5E-19 136.8 10.7 235 106-351 214-473 (1113)
225 PRK05137 tolB translocation pr 99.6 1.1E-12 2.4E-17 123.2 23.0 200 146-379 182-393 (435)
226 KOG2321 WD40 repeat protein [G 99.5 5.8E-13 1.3E-17 119.4 18.9 237 122-389 49-300 (703)
227 KOG0974 WD-repeat protein WDR6 99.5 3.4E-13 7.3E-18 128.8 17.5 201 125-349 88-291 (967)
228 KOG4547 WD40 repeat-containing 99.5 1.4E-12 3E-17 117.7 20.1 195 133-348 2-222 (541)
229 PF02239 Cytochrom_D1: Cytochr 99.5 1.2E-11 2.5E-16 112.4 26.5 248 128-393 40-349 (369)
230 KOG0280 Uncharacterized conser 99.5 1.9E-12 4.2E-17 107.0 18.6 214 145-372 45-266 (339)
231 PRK00178 tolB translocation pr 99.5 1.3E-11 2.8E-16 116.1 27.0 205 114-347 188-407 (430)
232 TIGR02800 propeller_TolB tol-p 99.5 6.3E-12 1.4E-16 118.0 23.8 204 113-345 178-396 (417)
233 PRK04792 tolB translocation pr 99.5 1.7E-11 3.7E-16 115.1 26.3 235 83-346 171-425 (448)
234 PRK02889 tolB translocation pr 99.5 1.3E-12 2.8E-17 122.2 18.3 203 146-380 176-388 (427)
235 PRK04922 tolB translocation pr 99.5 3.6E-12 7.8E-17 119.6 20.1 212 146-391 184-411 (433)
236 KOG3881 Uncharacterized conser 99.5 3.9E-12 8.4E-17 109.2 18.1 246 124-392 55-321 (412)
237 PRK01029 tolB translocation pr 99.5 4.2E-11 9.2E-16 111.6 25.4 214 114-350 174-407 (428)
238 KOG1064 RAVE (regulator of V-A 99.5 8.3E-13 1.8E-17 132.3 13.9 226 120-383 2204-2438(2439)
239 KOG1354 Serine/threonine prote 99.4 7.5E-12 1.6E-16 105.7 17.0 266 124-391 25-359 (433)
240 PF02239 Cytochrom_D1: Cytochr 99.4 7E-11 1.5E-15 107.4 24.7 195 137-355 6-211 (369)
241 KOG2321 WD40 repeat protein [G 99.4 5.3E-12 1.2E-16 113.4 16.9 213 129-354 138-351 (703)
242 PF10282 Lactonase: Lactonase, 99.4 3.5E-10 7.6E-15 102.8 29.1 262 125-391 37-322 (345)
243 TIGR02800 propeller_TolB tol-p 99.4 2.7E-11 5.8E-16 113.8 21.5 200 146-379 170-381 (417)
244 KOG1334 WD40 repeat protein [G 99.4 3.9E-12 8.5E-17 112.0 14.5 274 102-392 162-467 (559)
245 KOG2315 Predicted translation 99.4 1E-10 2.3E-15 105.0 23.7 133 227-372 270-413 (566)
246 KOG4497 Uncharacterized conser 99.4 2E-12 4.2E-17 108.6 10.7 206 175-407 14-223 (447)
247 KOG4497 Uncharacterized conser 99.4 6.1E-11 1.3E-15 99.8 17.8 240 124-377 48-417 (447)
248 KOG1409 Uncharacterized conser 99.4 4.5E-11 9.7E-16 101.1 16.7 226 121-347 65-395 (404)
249 KOG0280 Uncharacterized conser 99.3 9.1E-11 2E-15 97.3 16.4 209 124-350 69-288 (339)
250 PRK00178 tolB translocation pr 99.3 3.4E-10 7.4E-15 106.5 22.9 200 147-380 180-391 (430)
251 KOG1240 Protein kinase contain 99.3 1E-10 2.3E-15 113.9 18.1 176 165-354 1044-1233(1431)
252 KOG1354 Serine/threonine prote 99.3 1.1E-10 2.4E-15 98.8 13.9 211 124-349 84-362 (433)
253 KOG0309 Conserved WD40 repeat- 99.3 2E-11 4.3E-16 112.9 10.3 228 124-370 24-256 (1081)
254 PF10282 Lactonase: Lactonase, 99.3 1.3E-08 2.7E-13 92.7 28.6 209 124-346 86-322 (345)
255 PRK04792 tolB translocation pr 99.3 6.5E-10 1.4E-14 104.5 20.4 199 147-379 199-409 (448)
256 COG2706 3-carboxymuconate cycl 99.3 1.8E-08 4E-13 86.5 26.8 266 121-392 36-322 (346)
257 PRK01029 tolB translocation pr 99.3 1.2E-09 2.7E-14 101.8 21.6 205 146-378 165-386 (428)
258 KOG1409 Uncharacterized conser 99.2 4.4E-10 9.6E-15 95.2 15.9 213 119-350 19-274 (404)
259 KOG0974 WD-repeat protein WDR6 99.2 3.2E-10 6.9E-15 108.9 16.8 197 172-391 90-288 (967)
260 COG5354 Uncharacterized protei 99.2 3.1E-09 6.7E-14 94.7 21.2 274 115-407 23-372 (561)
261 KOG2695 WD40 repeat protein [G 99.2 7.4E-11 1.6E-15 99.9 10.2 168 185-372 228-402 (425)
262 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.5E-08 3.2E-13 90.3 24.9 216 132-354 53-338 (352)
263 KOG3914 WD repeat protein WDR4 99.2 4E-10 8.6E-15 97.5 13.3 163 172-355 65-232 (390)
264 COG2706 3-carboxymuconate cycl 99.2 5.8E-08 1.3E-12 83.5 25.4 207 128-348 92-323 (346)
265 PRK04043 tolB translocation pr 99.2 5.1E-08 1.1E-12 90.5 27.3 192 126-348 189-402 (419)
266 KOG3914 WD repeat protein WDR4 99.2 6.6E-10 1.4E-14 96.2 13.1 165 125-312 63-231 (390)
267 PF15492 Nbas_N: Neuroblastoma 99.2 5E-08 1.1E-12 81.4 23.5 213 130-354 3-267 (282)
268 KOG4547 WD40 repeat-containing 99.2 5E-09 1.1E-13 95.0 19.1 165 136-320 70-240 (541)
269 KOG1064 RAVE (regulator of V-A 99.2 2.7E-10 5.8E-15 114.9 11.9 187 170-391 2209-2398(2439)
270 COG4946 Uncharacterized protei 99.1 3E-08 6.6E-13 87.8 22.7 225 133-389 275-523 (668)
271 COG5170 CDC55 Serine/threonine 99.1 1.5E-09 3.3E-14 90.8 13.9 226 124-351 26-314 (460)
272 KOG4532 WD40-like repeat conta 99.1 2.6E-08 5.6E-13 81.9 20.3 238 136-392 84-332 (344)
273 KOG1832 HIV-1 Vpr-binding prot 99.1 6.7E-11 1.5E-15 111.6 5.5 216 118-378 1095-1317(1516)
274 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.4E-07 3.1E-12 84.1 26.2 227 146-392 27-331 (352)
275 PLN02919 haloacid dehalogenase 99.1 7.1E-08 1.5E-12 99.2 26.9 215 126-350 625-892 (1057)
276 COG4946 Uncharacterized protei 99.1 4.3E-08 9.4E-13 86.9 20.8 175 132-335 327-507 (668)
277 KOG4190 Uncharacterized conser 99.1 2.5E-10 5.4E-15 102.5 7.1 211 118-348 729-950 (1034)
278 COG5354 Uncharacterized protei 99.1 8.5E-08 1.8E-12 85.8 22.0 264 123-404 70-409 (561)
279 KOG2041 WD40 repeat protein [G 99.0 1.2E-08 2.6E-13 94.6 15.8 236 124-380 14-276 (1189)
280 KOG2314 Translation initiation 99.0 1.3E-07 2.9E-12 85.4 21.9 259 125-407 250-550 (698)
281 KOG0309 Conserved WD40 repeat- 99.0 9.3E-10 2E-14 102.1 8.6 221 112-347 54-340 (1081)
282 PLN02919 haloacid dehalogenase 99.0 4.3E-07 9.4E-12 93.6 28.3 256 128-392 571-889 (1057)
283 KOG4714 Nucleoporin [Nuclear s 99.0 3.5E-09 7.6E-14 86.6 10.4 168 115-300 80-254 (319)
284 PF04762 IKI3: IKI3 family; I 99.0 4.1E-07 8.8E-12 92.1 25.7 241 125-390 22-332 (928)
285 PRK04043 tolB translocation pr 99.0 5.6E-07 1.2E-11 83.6 24.7 177 171-379 189-384 (419)
286 KOG2041 WD40 repeat protein [G 99.0 1E-08 2.3E-13 95.0 12.5 198 117-337 64-279 (1189)
287 KOG4714 Nucleoporin [Nuclear s 99.0 1.4E-08 3E-13 83.1 11.9 149 180-347 100-255 (319)
288 KOG2315 Predicted translation 98.9 1.3E-07 2.8E-12 85.6 17.2 168 128-327 221-411 (566)
289 PF04762 IKI3: IKI3 family; I 98.9 5.9E-07 1.3E-11 90.9 23.7 214 122-348 73-335 (928)
290 PF07433 DUF1513: Protein of u 98.9 3.3E-06 7.1E-11 72.9 24.6 206 125-354 5-255 (305)
291 PF08450 SGL: SMP-30/Gluconola 98.9 3.2E-06 7E-11 73.2 25.1 215 129-370 4-232 (246)
292 PF00400 WD40: WD domain, G-be 98.8 9.9E-09 2.1E-13 60.6 5.8 38 307-344 2-39 (39)
293 KOG4190 Uncharacterized conser 98.8 1.7E-08 3.7E-13 91.0 9.0 221 102-344 755-986 (1034)
294 PF08450 SGL: SMP-30/Gluconola 98.8 2.9E-05 6.4E-10 67.2 28.9 182 127-334 42-243 (246)
295 KOG2695 WD40 repeat protein [G 98.8 2.7E-08 5.8E-13 84.7 8.0 162 130-313 217-385 (425)
296 PF15492 Nbas_N: Neuroblastoma 98.7 2.8E-06 6E-11 71.2 18.9 165 126-300 45-259 (282)
297 KOG4532 WD40-like repeat conta 98.7 9.3E-07 2E-11 73.0 15.8 129 127-266 161-291 (344)
298 KOG1275 PAB-dependent poly(A) 98.7 4.3E-07 9.3E-12 86.9 15.7 187 135-345 146-341 (1118)
299 TIGR03300 assembly_YfgL outer 98.7 1.3E-06 2.7E-11 81.0 18.4 228 136-388 145-376 (377)
300 KOG2314 Translation initiation 98.7 2.8E-06 6E-11 77.1 19.5 248 106-380 284-555 (698)
301 PF13360 PQQ_2: PQQ-like domai 98.7 8.8E-06 1.9E-10 70.1 22.4 189 135-351 35-235 (238)
302 KOG2066 Vacuolar assembly/sort 98.7 1.7E-06 3.7E-11 81.9 18.5 140 135-300 82-233 (846)
303 KOG1920 IkappaB kinase complex 98.7 1.9E-05 4.2E-10 78.3 25.8 217 124-348 68-324 (1265)
304 KOG0882 Cyclophilin-related pe 98.7 2.8E-07 6E-12 81.4 11.4 215 123-354 8-239 (558)
305 KOG1912 WD40 repeat protein [G 98.7 2.5E-06 5.3E-11 80.5 18.0 214 118-354 11-268 (1062)
306 COG5170 CDC55 Serine/threonine 98.7 4.1E-07 9E-12 76.6 11.5 219 170-391 27-309 (460)
307 PF00400 WD40: WD domain, G-be 98.6 1.5E-07 3.3E-12 55.5 6.1 39 259-298 1-39 (39)
308 PF06977 SdiA-regulated: SdiA- 98.6 3E-05 6.6E-10 66.0 22.2 211 118-343 15-247 (248)
309 KOG1275 PAB-dependent poly(A) 98.6 5.5E-07 1.2E-11 86.2 12.7 184 180-389 146-340 (1118)
310 KOG1645 RING-finger-containing 98.6 7.9E-06 1.7E-10 71.4 18.2 251 119-392 188-462 (463)
311 KOG1920 IkappaB kinase complex 98.6 3.1E-05 6.6E-10 77.0 24.2 200 169-392 68-323 (1265)
312 KOG1008 Uncharacterized conser 98.6 2.3E-08 5E-13 91.8 2.1 206 125-347 57-276 (783)
313 PF07433 DUF1513: Protein of u 98.6 2.7E-05 5.9E-10 67.3 20.6 194 115-340 47-279 (305)
314 KOG3621 WD40 repeat-containing 98.5 1.8E-06 4E-11 80.6 13.8 153 123-289 32-188 (726)
315 KOG2066 Vacuolar assembly/sort 98.5 5.5E-06 1.2E-10 78.5 16.9 184 124-348 39-235 (846)
316 TIGR03300 assembly_YfgL outer 98.5 2.2E-05 4.7E-10 72.7 21.1 178 137-343 191-376 (377)
317 PF11768 DUF3312: Protein of u 98.5 5E-06 1.1E-10 76.6 15.8 110 230-347 208-330 (545)
318 PF11768 DUF3312: Protein of u 98.5 3.7E-06 8E-11 77.4 14.6 114 122-240 257-370 (545)
319 KOG3617 WD40 and TPR repeat-co 98.5 9.1E-06 2E-10 77.5 17.4 109 128-257 19-131 (1416)
320 PF13360 PQQ_2: PQQ-like domai 98.5 0.00012 2.5E-09 63.1 22.3 180 145-351 2-196 (238)
321 KOG1912 WD40 repeat protein [G 98.5 4.1E-05 8.9E-10 72.6 20.0 218 106-347 37-305 (1062)
322 KOG2114 Vacuolar assembly/sort 98.4 6.4E-05 1.4E-09 72.1 20.8 212 131-354 30-251 (933)
323 PF08596 Lgl_C: Lethal giant l 98.4 0.00013 2.8E-09 66.9 22.1 238 126-377 3-321 (395)
324 KOG2114 Vacuolar assembly/sort 98.3 5.9E-05 1.3E-09 72.4 16.6 194 176-390 30-242 (933)
325 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00055 1.2E-08 62.6 21.5 246 124-377 42-342 (353)
326 KOG0882 Cyclophilin-related pe 98.2 2.3E-05 4.9E-10 69.6 11.5 211 119-353 48-312 (558)
327 COG0823 TolB Periplasmic compo 98.2 0.00011 2.5E-09 68.0 16.4 194 116-337 184-390 (425)
328 PRK02888 nitrous-oxide reducta 98.2 0.00024 5.3E-09 67.4 18.5 187 132-347 200-405 (635)
329 KOG1832 HIV-1 Vpr-binding prot 98.2 2.7E-06 5.9E-11 81.4 5.6 145 226-378 1100-1246(1516)
330 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0032 6.9E-08 52.5 22.0 139 136-296 23-161 (354)
331 PF04841 Vps16_N: Vps16, N-ter 98.1 0.003 6.5E-08 58.8 24.3 200 129-354 33-254 (410)
332 KOG1008 Uncharacterized conser 98.1 8.1E-07 1.7E-11 82.0 0.2 164 119-301 97-276 (783)
333 PF04053 Coatomer_WDAD: Coatom 98.1 0.00045 9.7E-09 64.4 18.0 180 125-342 33-219 (443)
334 PF06977 SdiA-regulated: SdiA- 98.1 0.0013 2.9E-08 56.1 19.2 203 167-388 19-247 (248)
335 PRK11138 outer membrane biogen 98.0 0.00051 1.1E-08 64.0 18.4 197 136-354 160-361 (394)
336 COG0823 TolB Periplasmic compo 98.0 0.00027 5.8E-09 65.6 15.5 156 170-349 193-361 (425)
337 PRK11138 outer membrane biogen 98.0 0.0015 3.2E-08 60.9 20.6 179 138-345 207-393 (394)
338 PRK02888 nitrous-oxide reducta 98.0 0.0011 2.4E-08 63.0 18.8 183 126-336 236-451 (635)
339 PF02897 Peptidase_S9_N: Proly 98.0 0.0084 1.8E-07 56.3 25.2 202 126-346 125-357 (414)
340 KOG3617 WD40 and TPR repeat-co 98.0 0.00032 6.9E-09 67.5 15.0 74 123-199 58-131 (1416)
341 KOG1645 RING-finger-containing 97.9 6E-05 1.3E-09 66.1 8.8 96 251-351 175-271 (463)
342 COG3204 Uncharacterized protei 97.9 0.0077 1.7E-07 51.4 20.0 180 120-312 81-270 (316)
343 PF06433 Me-amine-dh_H: Methyl 97.9 0.0068 1.5E-07 53.5 20.4 222 128-354 39-328 (342)
344 PF08553 VID27: VID27 cytoplas 97.9 0.00035 7.6E-09 68.7 13.9 144 238-389 492-645 (794)
345 COG3391 Uncharacterized conser 97.8 0.016 3.5E-07 53.5 23.4 202 126-354 75-291 (381)
346 PRK13616 lipoprotein LpqB; Pro 97.8 0.0036 7.8E-08 60.8 19.7 193 125-339 350-561 (591)
347 PF04053 Coatomer_WDAD: Coatom 97.8 0.00075 1.6E-08 62.9 14.5 141 171-347 34-174 (443)
348 PF08553 VID27: VID27 cytoplas 97.8 0.0016 3.5E-08 64.3 17.2 143 181-345 493-646 (794)
349 PF03178 CPSF_A: CPSF A subuni 97.8 0.0054 1.2E-07 55.4 19.7 179 146-347 2-203 (321)
350 smart00320 WD40 WD40 repeats. 97.8 7.8E-05 1.7E-09 42.8 5.2 38 307-344 3-40 (40)
351 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.0017 3.7E-08 59.4 16.1 229 133-377 1-295 (353)
352 PF08596 Lgl_C: Lethal giant l 97.7 0.0032 6.9E-08 58.0 17.6 202 119-336 81-326 (395)
353 COG3386 Gluconolactonase [Carb 97.7 0.015 3.2E-07 51.6 20.6 186 125-335 66-274 (307)
354 COG3391 Uncharacterized conser 97.7 0.031 6.8E-07 51.7 23.3 225 126-379 32-269 (381)
355 KOG3621 WD40 repeat-containing 97.7 0.00043 9.3E-09 65.3 10.8 117 229-347 35-155 (726)
356 KOG4640 Anaphase-promoting com 97.7 0.00031 6.6E-09 65.4 9.4 80 269-354 20-100 (665)
357 COG3490 Uncharacterized protei 97.6 0.007 1.5E-07 51.3 16.2 195 131-347 120-349 (366)
358 KOG2395 Protein involved in va 97.6 0.0033 7.3E-08 57.7 15.1 143 180-346 344-500 (644)
359 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.0086 1.9E-07 50.1 15.8 123 181-326 23-145 (354)
360 PF06433 Me-amine-dh_H: Methyl 97.6 0.021 4.5E-07 50.5 18.8 209 98-315 101-331 (342)
361 KOG4640 Anaphase-promoting com 97.5 0.00056 1.2E-08 63.8 9.4 92 229-326 22-115 (665)
362 PHA02713 hypothetical protein; 97.5 0.005 1.1E-07 59.9 16.4 187 135-347 303-534 (557)
363 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.018 3.8E-07 41.9 15.0 100 230-341 2-109 (111)
364 PF04841 Vps16_N: Vps16, N-ter 97.5 0.078 1.7E-06 49.5 23.0 199 125-344 81-285 (410)
365 smart00320 WD40 WD40 repeats. 97.4 0.00056 1.2E-08 39.0 5.7 39 259-298 2-40 (40)
366 PF00780 CNH: CNH domain; Int 97.4 0.028 6E-07 49.5 18.9 149 179-351 5-170 (275)
367 PF03178 CPSF_A: CPSF A subuni 97.4 0.058 1.3E-06 48.7 21.2 195 127-343 29-262 (321)
368 KOG2444 WD40 repeat protein [G 97.4 0.00083 1.8E-08 54.9 7.5 110 239-352 70-183 (238)
369 PF14870 PSII_BNR: Photosynthe 97.4 0.094 2E-06 46.3 21.4 156 228-388 145-301 (302)
370 PF14583 Pectate_lyase22: Olig 97.3 0.03 6.6E-07 50.5 16.8 197 131-350 42-276 (386)
371 KOG4499 Ca2+-binding protein R 97.3 0.032 7E-07 46.1 15.4 154 124-289 108-273 (310)
372 cd00216 PQQ_DH Dehydrogenases 97.2 0.093 2E-06 50.4 20.5 200 136-354 61-327 (488)
373 KOG2395 Protein involved in va 97.2 0.006 1.3E-07 56.1 11.4 144 236-388 342-497 (644)
374 PF12894 Apc4_WD40: Anaphase-p 97.1 0.002 4.3E-08 39.0 5.6 33 228-261 12-44 (47)
375 cd00216 PQQ_DH Dehydrogenases 97.1 0.15 3.2E-06 49.0 21.3 195 144-357 173-435 (488)
376 KOG4441 Proteins containing BT 97.1 0.047 1E-06 53.2 17.2 192 129-347 327-547 (571)
377 PF14870 PSII_BNR: Photosynthe 97.1 0.2 4.3E-06 44.3 23.8 235 124-385 16-255 (302)
378 KOG2079 Vacuolar assembly/sort 97.0 0.018 4E-07 57.4 13.7 105 135-256 98-202 (1206)
379 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.077 1.7E-06 38.6 14.7 100 127-252 2-109 (111)
380 PF00780 CNH: CNH domain; Int 97.0 0.22 4.9E-06 43.7 22.6 201 124-354 35-263 (275)
381 COG3386 Gluconolactonase [Carb 97.0 0.24 5.2E-06 44.1 19.4 202 131-354 31-250 (307)
382 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0042 9.2E-08 37.6 5.6 31 124-154 11-41 (47)
383 PRK13616 lipoprotein LpqB; Pro 96.9 0.03 6.5E-07 54.5 14.3 150 171-346 351-525 (591)
384 PHA03098 kelch-like protein; P 96.9 0.073 1.6E-06 51.9 17.3 188 134-347 293-512 (534)
385 PF10647 Gmad1: Lipoprotein Lp 96.9 0.26 5.7E-06 42.7 20.4 147 125-291 24-186 (253)
386 COG3204 Uncharacterized protei 96.8 0.27 5.8E-06 42.4 18.9 203 127-348 45-265 (316)
387 COG3490 Uncharacterized protei 96.8 0.096 2.1E-06 44.7 14.7 146 230-379 70-242 (366)
388 KOG2079 Vacuolar assembly/sort 96.8 0.0048 1.1E-07 61.3 8.2 101 238-345 98-202 (1206)
389 PF05694 SBP56: 56kDa selenium 96.7 0.45 9.8E-06 43.7 21.5 203 135-350 86-346 (461)
390 KOG2444 WD40 repeat protein [G 96.7 0.0026 5.7E-08 52.1 4.8 103 181-300 70-177 (238)
391 PF05096 Glu_cyclase_2: Glutam 96.7 0.35 7.6E-06 41.4 23.0 182 126-335 46-249 (264)
392 PF05694 SBP56: 56kDa selenium 96.6 0.59 1.3E-05 42.9 20.3 191 129-335 134-392 (461)
393 PF14727 PHTB1_N: PTHB1 N-term 96.5 0.73 1.6E-05 42.8 19.7 207 180-404 36-283 (418)
394 PF02897 Peptidase_S9_N: Proly 96.4 0.68 1.5E-05 43.5 19.6 160 171-349 125-312 (414)
395 PHA02790 Kelch-like protein; P 96.4 0.44 9.4E-06 45.7 18.1 184 135-347 271-471 (480)
396 KOG4441 Proteins containing BT 96.3 0.34 7.3E-06 47.4 16.9 193 133-349 282-502 (571)
397 KOG3630 Nuclear pore complex, 96.2 0.081 1.7E-06 53.5 12.2 153 171-334 102-261 (1405)
398 PF14761 HPS3_N: Hermansky-Pud 96.1 0.51 1.1E-05 38.9 14.6 144 182-345 29-213 (215)
399 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.1 1.5 3.2E-05 42.6 23.0 111 145-262 180-338 (527)
400 PF10647 Gmad1: Lipoprotein Lp 96.1 0.83 1.8E-05 39.6 18.2 148 171-339 25-188 (253)
401 KOG2280 Vacuolar assembly/sort 96.0 0.59 1.3E-05 45.5 16.6 187 146-355 64-255 (829)
402 PF05096 Glu_cyclase_2: Glutam 96.0 0.85 1.9E-05 39.2 17.2 133 138-288 102-249 (264)
403 PHA02713 hypothetical protein; 96.0 0.13 2.8E-06 50.2 12.9 144 135-300 351-533 (557)
404 PF07995 GSDH: Glucose / Sorbo 95.8 1.4 3.1E-05 39.9 17.9 243 126-380 3-323 (331)
405 PF12234 Rav1p_C: RAVE protein 95.8 0.5 1.1E-05 46.0 15.2 113 231-345 33-155 (631)
406 KOG4499 Ca2+-binding protein R 95.7 0.99 2.2E-05 37.6 15.8 135 229-370 110-261 (310)
407 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.7 2.1 4.7E-05 41.5 21.7 195 136-351 69-338 (527)
408 PF15390 DUF4613: Domain of un 95.7 1.9 4.1E-05 41.1 18.0 156 124-300 19-186 (671)
409 PF14583 Pectate_lyase22: Olig 95.7 0.37 8E-06 43.7 13.1 175 152-347 16-223 (386)
410 PRK10115 protease 2; Provision 95.6 2.9 6.2E-05 42.1 24.2 197 125-346 127-344 (686)
411 PF12234 Rav1p_C: RAVE protein 95.5 0.46 1E-05 46.2 14.1 124 126-257 31-156 (631)
412 PF10168 Nup88: Nuclear pore c 95.5 2.2 4.7E-05 42.8 19.1 78 123-201 83-181 (717)
413 KOG1897 Damage-specific DNA bi 95.4 3.5 7.7E-05 41.7 20.5 188 139-349 687-901 (1096)
414 PF14727 PHTB1_N: PTHB1 N-term 95.4 2.3 5.1E-05 39.5 24.6 152 135-300 36-204 (418)
415 PF15390 DUF4613: Domain of un 95.3 0.33 7.1E-06 45.9 11.8 121 122-257 54-186 (671)
416 PF10313 DUF2415: Uncharacteri 95.3 0.065 1.4E-06 31.5 4.7 31 270-300 1-33 (43)
417 COG5167 VID27 Protein involved 95.2 0.63 1.4E-05 43.3 13.1 144 180-347 478-633 (776)
418 PF14655 RAB3GAP2_N: Rab3 GTPa 95.2 2.6 5.7E-05 39.1 25.8 38 317-354 308-345 (415)
419 KOG3630 Nuclear pore complex, 95.2 0.16 3.5E-06 51.4 10.0 114 229-346 102-228 (1405)
420 PF10313 DUF2415: Uncharacteri 95.2 0.13 2.8E-06 30.2 5.7 32 125-156 1-35 (43)
421 TIGR02604 Piru_Ver_Nterm putat 95.2 1 2.3E-05 41.5 14.9 143 171-336 15-203 (367)
422 TIGR03118 PEPCTERM_chp_1 conse 95.0 2.3 5E-05 37.2 20.8 213 126-355 24-288 (336)
423 KOG1916 Nuclear protein, conta 94.9 0.037 8E-07 54.4 4.8 190 145-351 110-328 (1283)
424 PF10168 Nup88: Nuclear pore c 94.9 2.6 5.5E-05 42.4 17.5 91 168-259 83-181 (717)
425 TIGR02604 Piru_Ver_Nterm putat 94.9 2 4.3E-05 39.6 15.9 155 125-290 14-203 (367)
426 COG5167 VID27 Protein involved 94.8 1.5 3.3E-05 40.9 14.3 60 239-300 573-632 (776)
427 PRK10115 protease 2; Provision 94.8 5.2 0.00011 40.3 22.8 113 170-300 127-255 (686)
428 PHA03098 kelch-like protein; P 94.6 1.6 3.5E-05 42.6 15.5 147 179-348 293-466 (534)
429 PF08728 CRT10: CRT10; InterP 94.6 3.3 7.1E-05 41.1 16.9 157 136-299 49-245 (717)
430 KOG2377 Uncharacterized conser 94.4 1 2.2E-05 41.4 12.1 104 226-335 65-172 (657)
431 PLN02193 nitrile-specifier pro 94.4 4.9 0.00011 38.5 18.9 105 180-300 228-351 (470)
432 KOG2377 Uncharacterized conser 94.2 1.4 3.1E-05 40.4 12.6 146 129-289 27-173 (657)
433 PF08728 CRT10: CRT10; InterP 93.9 7 0.00015 38.9 17.5 115 229-345 102-245 (717)
434 KOG1897 Damage-specific DNA bi 93.9 8.5 0.00018 39.2 27.5 158 229-389 489-657 (1096)
435 PLN00033 photosystem II stabil 93.8 5.8 0.00013 36.9 24.5 150 229-390 240-398 (398)
436 KOG2247 WD40 repeat-containing 93.6 0.011 2.3E-07 54.0 -1.6 148 126-296 36-184 (615)
437 PRK13684 Ycf48-like protein; P 93.6 5.6 0.00012 36.1 23.9 154 228-392 173-332 (334)
438 PLN02153 epithiospecifier prot 93.5 5.8 0.00013 36.1 19.6 69 135-205 32-115 (341)
439 PF07995 GSDH: Glucose / Sorbo 93.5 5.4 0.00012 36.2 15.4 109 229-339 3-136 (331)
440 TIGR03074 PQQ_membr_DH membran 93.3 10 0.00023 38.5 23.3 210 136-354 194-485 (764)
441 PF07569 Hira: TUP1-like enhan 92.8 0.77 1.7E-05 38.7 8.4 72 132-204 18-100 (219)
442 PF07569 Hira: TUP1-like enhan 92.8 0.95 2.1E-05 38.2 8.9 80 177-260 18-98 (219)
443 TIGR03548 mutarot_permut cycli 92.6 7.6 0.00016 35.0 17.4 138 135-291 72-233 (323)
444 PF14781 BBS2_N: Ciliary BBSom 92.5 3.8 8.1E-05 31.1 12.5 106 175-300 4-125 (136)
445 COG4590 ABC-type uncharacteriz 92.2 1 2.3E-05 41.2 8.7 165 170-352 221-392 (733)
446 KOG4460 Nuclear pore complex, 92.1 11 0.00023 35.7 15.5 27 228-254 104-130 (741)
447 KOG1983 Tomosyn and related SN 92.1 4.9 0.00011 42.1 14.6 32 124-155 35-66 (993)
448 PLN02193 nitrile-specifier pro 92.0 12 0.00026 35.9 16.9 148 135-300 228-410 (470)
449 PF13449 Phytase-like: Esteras 91.9 9.4 0.0002 34.5 16.9 159 124-287 19-231 (326)
450 PF14655 RAB3GAP2_N: Rab3 GTPa 91.7 4 8.7E-05 38.0 12.2 102 165-267 303-408 (415)
451 COG3823 Glutamine cyclotransfe 91.7 6.7 0.00014 32.3 13.8 172 135-334 55-247 (262)
452 KOG2280 Vacuolar assembly/sort 91.6 13 0.00028 36.8 15.6 96 228-335 217-314 (829)
453 PRK14131 N-acetylneuraminic ac 91.5 12 0.00025 34.7 15.9 40 249-290 189-230 (376)
454 PF14761 HPS3_N: Hermansky-Pud 91.4 5.3 0.00011 33.1 11.2 106 240-349 29-166 (215)
455 PHA02790 Kelch-like protein; P 91.1 8.2 0.00018 37.1 14.2 142 134-300 317-470 (480)
456 PF12768 Rax2: Cortical protei 91.0 9.5 0.00021 33.5 13.2 94 190-300 15-123 (281)
457 KOG2247 WD40 repeat-containing 91.0 0.034 7.3E-07 51.0 -1.9 136 172-331 37-174 (615)
458 KOG1900 Nuclear pore complex, 90.9 3.5 7.5E-05 43.2 11.6 146 144-301 97-273 (1311)
459 TIGR03547 muta_rot_YjhT mutatr 90.8 13 0.00027 34.0 16.5 41 249-291 168-210 (346)
460 PF10214 Rrn6: RNA polymerase 90.7 22 0.00048 36.5 23.6 173 122-300 77-276 (765)
461 KOG4460 Nuclear pore complex, 90.6 6.7 0.00014 37.0 12.2 87 170-261 104-202 (741)
462 PLN00033 photosystem II stabil 90.6 14 0.00031 34.3 17.7 105 229-343 282-396 (398)
463 KOG1900 Nuclear pore complex, 90.5 3.1 6.7E-05 43.5 10.9 157 99-258 94-273 (1311)
464 TIGR03548 mutarot_permut cycli 90.4 13 0.00029 33.5 19.4 61 238-300 123-194 (323)
465 TIGR03547 muta_rot_YjhT mutatr 90.1 15 0.00032 33.6 16.8 22 135-156 63-95 (346)
466 COG5276 Uncharacterized conser 90.0 12 0.00027 32.6 23.0 155 171-350 88-245 (370)
467 PF12657 TFIIIC_delta: Transcr 90.0 3 6.5E-05 33.7 8.9 32 317-348 86-123 (173)
468 PRK13684 Ycf48-like protein; P 89.3 17 0.00036 33.1 24.9 109 269-385 172-282 (334)
469 TIGR02276 beta_rpt_yvtn 40-res 89.3 2.7 5.8E-05 24.3 6.1 40 237-277 1-41 (42)
470 TIGR03074 PQQ_membr_DH membran 89.2 24 0.00052 36.1 16.1 112 239-355 194-353 (764)
471 KOG1916 Nuclear protein, conta 88.9 0.36 7.8E-06 47.9 3.0 158 123-300 179-374 (1283)
472 TIGR03606 non_repeat_PQQ dehyd 88.7 17 0.00037 34.4 13.8 57 125-181 30-90 (454)
473 PF14781 BBS2_N: Ciliary BBSom 88.7 9 0.00019 29.2 13.9 115 128-261 2-129 (136)
474 PF02333 Phytase: Phytase; In 88.3 20 0.00044 32.9 22.3 196 134-347 66-291 (381)
475 PF07250 Glyoxal_oxid_N: Glyox 88.1 9.9 0.00021 32.6 10.8 127 131-269 73-209 (243)
476 PF12657 TFIIIC_delta: Transcr 88.0 4.2 9.1E-05 32.8 8.4 30 229-258 87-122 (173)
477 PF13449 Phytase-like: Esteras 87.9 21 0.00045 32.3 17.0 168 171-346 21-249 (326)
478 PF10395 Utp8: Utp8 family; I 87.7 31 0.00066 34.2 16.7 160 124-299 129-304 (670)
479 PF11715 Nup160: Nucleoporin N 86.8 3.3 7.2E-05 40.5 8.5 74 134-207 156-256 (547)
480 COG4257 Vgb Streptogramin lyas 86.7 20 0.00044 31.0 19.6 202 124-347 61-263 (353)
481 PF07676 PD40: WD40-like Beta 86.1 4.3 9.3E-05 23.1 5.5 29 315-343 7-38 (39)
482 COG5290 IkappaB kinase complex 85.9 41 0.00089 33.8 15.9 28 229-256 114-141 (1243)
483 PF11715 Nup160: Nucleoporin N 85.7 4.4 9.5E-05 39.7 8.7 87 179-265 156-256 (547)
484 COG4590 ABC-type uncharacteriz 85.6 3 6.5E-05 38.4 6.7 170 115-300 211-386 (733)
485 PF12768 Rax2: Cortical protei 85.4 25 0.00055 30.9 13.5 100 248-353 15-130 (281)
486 PRK14131 N-acetylneuraminic ac 85.2 32 0.00068 31.9 16.2 22 135-156 84-116 (376)
487 COG1770 PtrB Protease II [Amin 84.0 46 0.001 32.8 21.2 206 125-351 129-353 (682)
488 PLN02153 epithiospecifier prot 83.7 34 0.00074 31.1 18.9 69 135-205 85-173 (341)
489 COG4257 Vgb Streptogramin lyas 83.7 29 0.00062 30.2 20.8 194 124-348 103-307 (353)
490 TIGR03032 conserved hypothetic 83.3 25 0.00055 31.2 11.1 81 180-279 212-314 (335)
491 PF05935 Arylsulfotrans: Aryls 83.0 46 0.00099 32.0 21.3 133 130-266 153-310 (477)
492 PF07676 PD40: WD40-like Beta 82.3 4.9 0.00011 22.8 4.6 29 123-151 7-38 (39)
493 PF14269 Arylsulfotran_2: Aryl 82.3 36 0.00078 30.3 17.3 72 228-300 144-220 (299)
494 TIGR03118 PEPCTERM_chp_1 conse 80.9 40 0.00086 29.9 20.9 181 139-326 103-307 (336)
495 PF07250 Glyoxal_oxid_N: Glyox 80.7 31 0.00067 29.6 10.6 139 193-351 48-202 (243)
496 TIGR03606 non_repeat_PQQ dehyd 78.6 62 0.0013 30.8 14.1 59 172-239 32-90 (454)
497 smart00036 CNH Domain found in 78.5 49 0.0011 29.5 12.3 104 238-347 12-132 (302)
498 KOG3616 Selective LIM binding 78.4 38 0.00082 33.8 11.4 35 170-204 15-49 (1636)
499 PF11635 Med16: Mediator compl 78.1 87 0.0019 32.2 17.5 68 227-295 259-345 (753)
500 PF10214 Rrn6: RNA polymerase 77.8 90 0.0019 32.2 24.8 112 229-348 147-278 (765)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-44 Score=301.00 Aligned_cols=267 Identities=24% Similarity=0.321 Sum_probs=230.8
Q ss_pred CCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEE
Q 015438 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (407)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~ 194 (407)
+....+.+|.++|.|++|+|+|..||+|+.|.++++||+.+..+. ...++|...|.|++|+|||+.||+|+.||.|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~---~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL---FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc---eeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 445567899999999999999999999999999999999987444 35788999999999999999999999999999
Q ss_pred EEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeC-----CCCEEEEeeCCCeEEEEEcCCCeeeeeeeccC
Q 015438 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (407)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 269 (407)
+||.++++.... ...+|...|++++|.| ..++|++++.||.|+|||+..++++..+.+|.
T Consensus 183 lwdpktg~~~g~---------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT 247 (480)
T KOG0271|consen 183 LWDPKTGQQIGR---------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT 247 (480)
T ss_pred EecCCCCCcccc---------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc
Confidence 999998875432 2336888999999987 56799999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEeCccc-----------------------------------------------
Q 015438 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL----------------------------------------------- 302 (407)
Q Consensus 270 ~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~----------------------------------------------- 302 (407)
.+|+|++| ....+|++|+.|++|++|+....
T Consensus 248 ~~VTCvrw--GG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 248 ASVTCVRW--GGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred cceEEEEE--cCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 99999999 45668999999999999986510
Q ss_pred ----------------------------CCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccc
Q 015438 303 ----------------------------NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 303 ----------------------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (407)
....+++..+.+|..-|+.+.|+||++++|+++-|..|++||.++++.+.+
T Consensus 326 ~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~las- 404 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLAS- 404 (480)
T ss_pred HHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhh-
Confidence 012345556778999999999999999999999999999999999998876
Q ss_pred cCCCccccccceeeeCCCCCCccCCC-CCcceEEEe-----------CCccceeeEEEeeCCCCC
Q 015438 355 NLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYK-----------GHSVLRTLIRCHFSPVYR 407 (407)
Q Consensus 355 ~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~-----------gh~~~~~~~~~~fsp~~~ 407 (407)
+.+|...|..++++.|.|+|.++ .|.++++|+ ||.+ -|..+.||||++
T Consensus 405 ---fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~D--EVf~vDwspDG~ 464 (480)
T KOG0271|consen 405 ---FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHAD--EVFAVDWSPDGQ 464 (480)
T ss_pred ---hhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCc--eEEEEEecCCCc
Confidence 46678888889999999998765 689999997 6776 688999999975
No 2
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.7e-42 Score=279.04 Aligned_cols=267 Identities=19% Similarity=0.257 Sum_probs=230.4
Q ss_pred cccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEE
Q 015438 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd 197 (407)
.++.+|.+.|+++.|++|+++|++++.||.+.|||.-+..+.+.+.... ..|..++|+|.++++|.|+.|+.+.||+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s---~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS---SWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc---eeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 6789999999999999999999999999999999998876666544433 3699999999999999999999999999
Q ss_pred CCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEe
Q 015438 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (407)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 277 (407)
+.+.......+... ...+|++.+.|+.|-+|+ .|++++.|.+..+||+++++.+..+.+|.+.|.++.+
T Consensus 126 ls~~d~~g~~~v~r----------~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl 194 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSR----------ELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSL 194 (343)
T ss_pred cccccccccceeee----------eecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEec
Confidence 98664332222221 234688999999999855 6999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCC
Q 015438 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (407)
Q Consensus 278 s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (407)
+|.+++.+++|+-|+..++||+| .+.+++++.+|.+.|+++.|.|+|.-|++|++|++.++||+|...++..+.
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R----~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-- 268 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVR----SGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-- 268 (343)
T ss_pred CCCCCCeEEecccccceeeeecc----CcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec--
Confidence 86699999999999999999999 899999999999999999999999999999999999999999988887763
Q ss_pred CccccccceeeeCCCCCCccCCC-CCcceEEE-----------eCCccceeeEEEeeCCCC
Q 015438 358 FRSYEWDYRWMDYPPQARDLKHP-CDQSVATY-----------KGHSVLRTLIRCHFSPVY 406 (407)
Q Consensus 358 ~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~-----------~gh~~~~~~~~~~fsp~~ 406 (407)
......+|+.++||..||+|.++ .|....+| .||.+ .|..+..+||+
T Consensus 269 ~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG 327 (343)
T KOG0286|consen 269 HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDG 327 (343)
T ss_pred cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCC
Confidence 45567889999999999999875 44444444 58887 56666677775
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8e-41 Score=281.09 Aligned_cols=261 Identities=24% Similarity=0.359 Sum_probs=223.0
Q ss_pred cccccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC-
Q 015438 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP- 179 (407)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp- 179 (407)
+.|....+|+.....+.++..+|..-|.|++|+|||+.||+|+.||.|++||..+|..+.. .+.+|...|++++|.|
T Consensus 134 sGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~ 211 (480)
T KOG0271|consen 134 SGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPL 211 (480)
T ss_pred CCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeeccc
Confidence 3555666888877788889999999999999999999999999999999999999866554 5678989999999976
Q ss_pred ----CCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEE
Q 015438 180 ----DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (407)
Q Consensus 180 ----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 255 (407)
..++||+++.||.|+|||+..+.+..... ||+.+|+|++|--+| +|++|+.|++|++|+
T Consensus 212 hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls----------------gHT~~VTCvrwGG~g-liySgS~DrtIkvw~ 274 (480)
T KOG0271|consen 212 HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS----------------GHTASVTCVRWGGEG-LIYSGSQDRTIKVWR 274 (480)
T ss_pred ccCCCccceecccCCCCEEEEEccCceEEEEec----------------cCccceEEEEEcCCc-eEEecCCCceEEEEE
Confidence 57799999999999999999887654432 688899999997555 899999999999998
Q ss_pred cCCCeee-------------------------------------------------------------------------
Q 015438 256 LEANKLS------------------------------------------------------------------------- 262 (407)
Q Consensus 256 ~~~~~~~------------------------------------------------------------------------- 262 (407)
...|.+.
T Consensus 275 a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 275 ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred ccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence 6654321
Q ss_pred ------eeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeC
Q 015438 263 ------LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK 336 (407)
Q Consensus 263 ------~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 336 (407)
.++.+|..-|+.+.|| |++.++++++.|..|++||.+ +++.+.+++||...|+.++|+.|.++|++|+.
T Consensus 355 ~~kkpi~rmtgHq~lVn~V~fS-Pd~r~IASaSFDkSVkLW~g~----tGk~lasfRGHv~~VYqvawsaDsRLlVS~Sk 429 (480)
T KOG0271|consen 355 KSKKPITRMTGHQALVNHVSFS-PDGRYIASASFDKSVKLWDGR----TGKFLASFRGHVAAVYQVAWSADSRLLVSGSK 429 (480)
T ss_pred ccccchhhhhchhhheeeEEEC-CCccEEEEeecccceeeeeCC----CcchhhhhhhccceeEEEEeccCccEEEEcCC
Confidence 1233577788999998 899999999999999999999 99999999999999999999999999999999
Q ss_pred CCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCC-CCcceEEEe
Q 015438 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYK 389 (407)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~ 389 (407)
|.++++||+++.+..+. ..++.-.|-.+.++|||..++++ .|..++.|.
T Consensus 430 DsTLKvw~V~tkKl~~D----LpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 430 DSTLKVWDVRTKKLKQD----LPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceEEEEEeeeeeeccc----CCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999777654 55677788899999999887765 567777764
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-41 Score=288.90 Aligned_cols=255 Identities=21% Similarity=0.319 Sum_probs=229.3
Q ss_pred eeeeeccCCCCcccccCCCceEEEEECCC--CCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeE
Q 015438 107 MLSRYLPVNGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (407)
Q Consensus 107 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 184 (407)
.+|..........|.+|++.|.++.|+|. +..+|+|+.||++++|++++...+. ...+|...|..++|+|+|++|
T Consensus 200 kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~~L 276 (459)
T KOG0272|consen 200 KVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGKFL 276 (459)
T ss_pred eEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCcee
Confidence 45666667778899999999999999997 5689999999999999998864443 467788899999999999999
Q ss_pred EEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeee
Q 015438 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (407)
Q Consensus 185 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 264 (407)
++++.|.+-++||++++...... .||..+|.+++|+|||.++++|+.|..-+|||+++++++..
T Consensus 277 ~TasfD~tWRlWD~~tk~ElL~Q----------------EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~ 340 (459)
T KOG0272|consen 277 GTASFDSTWRLWDLETKSELLLQ----------------EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF 340 (459)
T ss_pred eecccccchhhcccccchhhHhh----------------cccccccceeEecCCCceeeccCccchhheeecccCcEEEE
Confidence 99999999999999988754332 37888999999999999999999999999999999999999
Q ss_pred eeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecC-CCCEEEEEeCCCcEEEE
Q 015438 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLW 343 (407)
Q Consensus 265 ~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~dg~i~iw 343 (407)
+.+|..+|.+|.|+ |+|..|+||+.|++++|||+| ....+..+.+|..-|+.+.|+| .|.+|+|++.|++++||
T Consensus 341 L~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR----~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 341 LAGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLR----MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIW 415 (459)
T ss_pred ecccccceeeEeEC-CCceEEeecCCCCcEEEeeec----ccccceecccccchhhheEecccCCeEEEEcccCcceeee
Confidence 99999999999998 899999999999999999999 7778999999999999999998 78999999999999999
Q ss_pred ECCCCCCcccccCCCccccccceeeeCCCCCCccC-CCCCcceEEEe
Q 015438 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK-HPCDQSVATYK 389 (407)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~v~~~~ 389 (407)
.-++.+++.. ..+|...|-+++.++++..++ ++.|++++.|.
T Consensus 416 s~~~~~~~ks----LaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 416 STRTWSPLKS----LAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCCcccchh----hcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999988765 567788899999999997665 56799999884
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.7e-41 Score=284.56 Aligned_cols=256 Identities=23% Similarity=0.282 Sum_probs=226.9
Q ss_pred cCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC--CCeEEEEeCCCeEEEEECC
Q 015438 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDVG 199 (407)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~dg~i~vwd~~ 199 (407)
+-+.+|..+.|+++++.||||+.+|.++||+..+.. ....+.+|...|.++.|+|. +..+|+++.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~---~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN---LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc---eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 457899999999999999999999999999998873 33457789999999999996 6789999999999999998
Q ss_pred CCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecC
Q 015438 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (407)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~ 279 (407)
+......+ .+|...|..++|+|+|++|++++.|.+-++||+++++.+....+|...|.+++|+
T Consensus 250 ~e~~l~~l----------------~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~- 312 (459)
T KOG0272|consen 250 QETPLQDL----------------EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ- 312 (459)
T ss_pred CCcchhhh----------------hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec-
Confidence 86544332 2677899999999999999999999999999999999988889999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCc
Q 015438 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (407)
Q Consensus 280 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (407)
++|.++++|+.|..-+|||+| ++.++..+.+|...|.+++|+|+|..|||||.|++++|||++..+.+.+ ..
T Consensus 313 ~DGSL~~tGGlD~~~RvWDlR----tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~----ip 384 (459)
T KOG0272|consen 313 PDGSLAATGGLDSLGRVWDLR----TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT----IP 384 (459)
T ss_pred CCCceeeccCccchhheeecc----cCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccccee----cc
Confidence 999999999999999999999 9999999999999999999999999999999999999999999988665 45
Q ss_pred cccccceeeeCCC-CCCcc-CCCCCcceEEEe-----------CCccceeeEEEeeCCCCC
Q 015438 360 SYEWDYRWMDYPP-QARDL-KHPCDQSVATYK-----------GHSVLRTLIRCHFSPVYR 407 (407)
Q Consensus 360 ~~~~~v~~~~~~~-~~~~l-~~~~~~~v~~~~-----------gh~~~~~~~~~~fsp~~~ 407 (407)
.|.--|+.|.|+| .|++| +++.|.++++|. ||.. .|+.|..|||.+
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~ 443 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQ 443 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCc
Confidence 5666778888998 45555 466788888886 6664 789999999864
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-37 Score=248.97 Aligned_cols=264 Identities=20% Similarity=0.201 Sum_probs=224.6
Q ss_pred cccccCCCceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCeEE--eEeeeccccceEEEEEEECCCCCeEEEEeCCCeEE
Q 015438 118 WPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~ 194 (407)
..+++|++.|..++..+. .+.+++++.|..+.+|++...... .......+|...|..+..++|+++.++++.|+.++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 467899999999999997 567889999999999998754211 12234567888999999999999999999999999
Q ss_pred EEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeecc--CCCe
Q 015438 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH--TSDV 272 (407)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v 272 (407)
+||+.+++....+. ||...|.+++|++|.+.|++|+.|.+|.+|++..... .++..+ ..-|
T Consensus 89 lWDl~~g~~t~~f~----------------GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WV 151 (315)
T KOG0279|consen 89 LWDLATGESTRRFV----------------GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWV 151 (315)
T ss_pred EEEecCCcEEEEEE----------------ecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcE
Confidence 99999986654443 5888999999999999999999999999999985444 444333 6889
Q ss_pred EEEEecCCC-CCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCc
Q 015438 273 NTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (407)
Q Consensus 273 ~~i~~s~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (407)
.|++|+|.. ..+|++++.|++|++||++ ..+....+.+|...++.+++||||...++|++||.+.+||++..+..
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~----~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l 227 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLR----NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL 227 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccC----CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee
Confidence 999999654 6799999999999999999 88888899999999999999999999999999999999999999887
Q ss_pred ccccCCCccccccceeeeCCCCCCccCCCCCcceEEEeCCc-------------c-----ceeeEEEeeCCCCC
Q 015438 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-------------V-----LRTLIRCHFSPVYR 407 (407)
Q Consensus 352 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh~-------------~-----~~~~~~~~fsp~~~ 407 (407)
..+ .+...|..+.|+|+...|+.+.+..|++|+-.+ + ...++.++||+|++
T Consensus 228 ysl-----~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~ 296 (315)
T KOG0279|consen 228 YSL-----EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ 296 (315)
T ss_pred Eec-----cCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc
Confidence 644 567789999999999999999999999998432 1 23467889998875
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=247.04 Aligned_cols=283 Identities=19% Similarity=0.284 Sum_probs=241.3
Q ss_pred cchhhhccCccCccC-----CCce-e--ccccccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEE
Q 015438 80 VSTVKMLAGREGNYS-----GRGR-F--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIY 151 (407)
Q Consensus 80 ~~~~~~~~~~~~~~~-----~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw 151 (407)
...-+.|.+|...+. ...+ + .+.+...++|+.+.+.+.+.+.--..-|..++|+|.|+++|.|+.|+...||
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 344477888876653 2222 1 4456677899999999999999999999999999999999999999999999
Q ss_pred EcCCC--e-EEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccc
Q 015438 152 DVERG--W-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF 228 (407)
Q Consensus 152 d~~~~--~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (407)
++.+. + .........+|.+.+.++.|-+ ...|++++.|.++.+||+++++....+. ||.+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~----------------GH~g 187 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH----------------GHTG 187 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec----------------CCcc
Confidence 99854 1 2233345678999999999977 5678999999999999999998766554 6899
Q ss_pred cEEEEEEeC-CCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCc
Q 015438 229 GIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 307 (407)
Q Consensus 229 ~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 307 (407)
.|.++.++| +++.+++|+.|+..++||++.+.++..|.+|.+.|++++|. |+|.-|++|+.|+++|+||+| ..+
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ff-P~G~afatGSDD~tcRlyDlR----aD~ 262 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFF-PSGDAFATGSDDATCRLYDLR----ADQ 262 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEc-cCCCeeeecCCCceeEEEeec----CCc
Confidence 999999999 99999999999999999999999999999999999999998 889999999999999999999 667
Q ss_pred eeeeecc--ccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCC-CCcc
Q 015438 308 PAGVLMG--HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQS 384 (407)
Q Consensus 308 ~~~~~~~--~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~ 384 (407)
.+..+.. -..+|++++||..|++|++|..|.++.+||.-+.+.... ..+|.-.|+++..+|||..++.+ .|.+
T Consensus 263 ~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~----L~GHeNRvScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 263 ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGV----LAGHENRVSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred EEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEE----eeccCCeeEEEEECCCCcEEEecchhHh
Confidence 7776652 245899999999999999999999999999887766554 45788899999999999888766 5888
Q ss_pred eEEE
Q 015438 385 VATY 388 (407)
Q Consensus 385 v~~~ 388 (407)
+++|
T Consensus 339 lriW 342 (343)
T KOG0286|consen 339 LRIW 342 (343)
T ss_pred eeec
Confidence 8887
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-36 Score=243.70 Aligned_cols=250 Identities=17% Similarity=0.217 Sum_probs=209.6
Q ss_pred CCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEE
Q 015438 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (407)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~ 194 (407)
.....+.+|...|..+..+++|++.++++.|+.+++||+.+++..+ .+.+|...|.+++|+||.+.+++|+.|.+|+
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~qivSGSrDkTik 130 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIK 130 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCceeecCCCcceee
Confidence 3455789999999999999999999999999999999999985444 4567888899999999999999999999999
Q ss_pred EEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCC--CCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCe
Q 015438 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (407)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 272 (407)
+|++.......... .+++..|+|++|+|+ ..+|++++.|++|++||+++.+....+.+|.+.+
T Consensus 131 lwnt~g~ck~t~~~---------------~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v 195 (315)
T KOG0279|consen 131 LWNTLGVCKYTIHE---------------DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV 195 (315)
T ss_pred eeeecccEEEEEec---------------CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccE
Confidence 99987654322221 123668999999998 6799999999999999999999999999999999
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcc
Q 015438 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (407)
Q Consensus 273 ~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (407)
+.+.+| ++|.++++|+.||.+.+||++ .++.+..+. |...|.+++|+|+..+|+.+. +..|+|||+.+...+.
T Consensus 196 ~t~~vS-pDGslcasGgkdg~~~LwdL~----~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 196 NTVTVS-PDGSLCASGGKDGEAMLWDLN----EGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVE 268 (315)
T ss_pred EEEEEC-CCCCEEecCCCCceEEEEEcc----CCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhh
Confidence 999998 899999999999999999999 888877775 788999999999988887766 4559999999998888
Q ss_pred cccCCCccc-----cccceeeeCCCCCCccCC-CCCcceEEEe
Q 015438 353 SCNLGFRSY-----EWDYRWMDYPPQARDLKH-PCDQSVATYK 389 (407)
Q Consensus 353 ~~~~~~~~~-----~~~v~~~~~~~~~~~l~~-~~~~~v~~~~ 389 (407)
.+....... ...-..++++++|.-|.+ -.|+.|++|+
T Consensus 269 ~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 269 ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred hccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 775443332 222346778999866554 4678888875
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.7e-36 Score=277.07 Aligned_cols=209 Identities=22% Similarity=0.354 Sum_probs=193.4
Q ss_pred ccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 015438 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~ 198 (407)
.+-+|.++|+.+.|+|+.++|++++.|++|++|.+.+...+ ....+|..+|.++.|+|.|-++|+++.|++.++|..
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~---V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL---VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeE---EEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 46799999999999999999999999999999999986433 346689999999999999999999999999999999
Q ss_pred CCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEec
Q 015438 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (407)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s 278 (407)
.......++. +|-..|.|+.|+|+..|+++|+.|.+|++||+.+|..++.|.+|.++|.+++||
T Consensus 523 d~~~PlRifa----------------ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~S 586 (707)
T KOG0263|consen 523 DHNKPLRIFA----------------GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFS 586 (707)
T ss_pred ccCCchhhhc----------------ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEc
Confidence 8766655543 577799999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCc
Q 015438 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (407)
Q Consensus 279 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (407)
++|.+|++|+.||.|++||+. .+.++..+.+|.+.|.++.|+.+|..||+||.|++|++||+.+....
T Consensus 587 -p~Gr~LaSg~ed~~I~iWDl~----~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 587 -PCGRYLASGDEDGLIKIWDLA----NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred -CCCceEeecccCCcEEEEEcC----CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 799999999999999999998 88999999999999999999999999999999999999999875544
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.7e-37 Score=280.78 Aligned_cols=251 Identities=22% Similarity=0.333 Sum_probs=221.0
Q ss_pred CcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCe--------EE--------------------eEeeecccc
Q 015438 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--------KI--------------------QKDILAKSL 168 (407)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--------~~--------------------~~~~~~~~~ 168 (407)
..++..-...+.|..|++++.+||.|..|..|++|.+...+ .+ .......+|
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 33444556789999999999999999999999999987310 00 111234689
Q ss_pred ceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC
Q 015438 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (407)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 248 (407)
.++|..+.|+|+.++|++++.|+++++|.+.+........ ||..+|.++.|+|.|-+||+++.|
T Consensus 451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~----------------GH~~PVwdV~F~P~GyYFatas~D 514 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK----------------GHLAPVWDVQFAPRGYYFATASHD 514 (707)
T ss_pred CCceeeeeecccccceeeccCCcceeeeecccceeEEEec----------------CCCcceeeEEecCCceEEEecCCC
Confidence 9999999999999999999999999999999887654433 688899999999999999999999
Q ss_pred CeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCC
Q 015438 249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG 328 (407)
Q Consensus 249 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 328 (407)
++.++|.....++++.+.+|-+.|.|+.|+ |+.+++++||.|.+||+||+. ++..++.+.||.++|++++|+|+|
T Consensus 515 ~tArLWs~d~~~PlRifaghlsDV~cv~FH-PNs~Y~aTGSsD~tVRlWDv~----~G~~VRiF~GH~~~V~al~~Sp~G 589 (707)
T KOG0263|consen 515 QTARLWSTDHNKPLRIFAGHLSDVDCVSFH-PNSNYVATGSSDRTVRLWDVS----TGNSVRIFTGHKGPVTALAFSPCG 589 (707)
T ss_pred ceeeeeecccCCchhhhcccccccceEEEC-CcccccccCCCCceEEEEEcC----CCcEEEEecCCCCceEEEEEcCCC
Confidence 999999999999999999999999999998 899999999999999999998 999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCC-CCcceEEEeCCc
Q 015438 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYKGHS 392 (407)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~gh~ 392 (407)
++|++|+.||.|++||+.+++.+..+ ..+...+..+.|+.+|.+|+++ .|.+|++|+-+.
T Consensus 590 r~LaSg~ed~~I~iWDl~~~~~v~~l----~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 590 RYLASGDEDGLIKIWDLANGSLVKQL----KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ceEeecccCCcEEEEEcCCCcchhhh----hcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999999999999999887765 3347778899999999888765 689999998654
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=228.09 Aligned_cols=249 Identities=19% Similarity=0.261 Sum_probs=206.7
Q ss_pred CcccccCCCceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCeEE-eEeeeccccceEEEEEEECCCCCeEEEEeCCCeEE
Q 015438 117 PWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (407)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~ 194 (407)
.+.+.+|.+.++.++|+|- |..||+++.|+.|+||+...+... ........|...|.+++|+|.|++|++++.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 4567899999999999998 889999999999999998853322 22334457889999999999999999999999999
Q ss_pred EEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC---eeeeeeeccCCC
Q 015438 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN---KLSLRILAHTSD 271 (407)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~ 271 (407)
||.-..++...+.. .+||...|.|++|+++|++||+++.|+.|.||.+..+ ++...++.|...
T Consensus 87 Iw~k~~~efecv~~--------------lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 87 IWKKEDGEFECVAT--------------LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred EeecCCCceeEEee--------------eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 99887666554332 3368889999999999999999999999999998744 577889999999
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCc
Q 015438 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (407)
Q Consensus 272 v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (407)
|..+.|+ |...+|++++.|++|++|+-.. ...-.+++++.+|...|.+++|++.|..|++++.|++|+||-+.+.-.
T Consensus 153 VK~V~WH-Pt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~- 229 (312)
T KOG0645|consen 153 VKHVIWH-PTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS- 229 (312)
T ss_pred ccEEEEc-CCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc-
Confidence 9999998 7788999999999999998763 336678999999999999999999999999999999999999774211
Q ss_pred ccccCCCccccccceeeeCCCCCCccCCCCCcceEEEeC
Q 015438 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390 (407)
Q Consensus 352 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~g 390 (407)
..+.+.+..+++. ++-+-+.+.|..+++|+-
T Consensus 230 -------~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 230 -------GMHSRALYDVPWD-NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred -------hhcccceEeeeec-ccceEeccCCCEEEEEEe
Confidence 1222334444445 677777788899999973
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.5e-34 Score=232.18 Aligned_cols=264 Identities=22% Similarity=0.335 Sum_probs=217.6
Q ss_pred CcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEE
Q 015438 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (407)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vw 196 (407)
...+.+|.+.|+.+.|+|+|.+||+|+.|..|.+|++... .......++|.+.|..+.|.+|++.|++++.|.+|+.|
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc--ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 3456899999999999999999999999999999997653 22333456899999999999999999999999999999
Q ss_pred ECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEE
Q 015438 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (407)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 275 (407)
|+++++.....+ +|..-|+++.-+.-| .++.+|+.|+++++||+++...++++. ...+++++
T Consensus 118 D~~tG~~~rk~k----------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv 180 (338)
T KOG0265|consen 118 DAETGKRIRKHK----------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAV 180 (338)
T ss_pred ecccceeeehhc----------------cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEE
Confidence 999998765544 466678888855444 367889999999999999998887763 56789999
Q ss_pred EecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCccccc
Q 015438 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (407)
Q Consensus 276 ~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (407)
.|. ..+..+.+|+-|+.|++||+| ....+..+.||..+|+.+..+|+|.++.+-+.|.++++||++.....+.+.
T Consensus 181 ~f~-d~s~qv~sggIdn~ikvWd~r----~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v 255 (338)
T KOG0265|consen 181 GFK-DTSDQVISGGIDNDIKVWDLR----KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCV 255 (338)
T ss_pred Eec-ccccceeeccccCceeeeccc----cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceE
Confidence 998 777788899999999999999 888999999999999999999999999999999999999999877665532
Q ss_pred ----CCCccccccceeeeCCCCCCccCCC-CCcceEEEe-----------CCccceeeEEEeeCCCC
Q 015438 356 ----LGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYK-----------GHSVLRTLIRCHFSPVY 406 (407)
Q Consensus 356 ----~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~-----------gh~~~~~~~~~~fsp~~ 406 (407)
......+-..-..+++|+++.+..+ .|+.+.+|+ ||. ..|+.+.|+|..
T Consensus 256 ~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e 320 (338)
T KOG0265|consen 256 KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTE 320 (338)
T ss_pred EEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCC
Confidence 2223334445567889999888765 455555554 665 378899999965
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3e-34 Score=247.65 Aligned_cols=252 Identities=17% Similarity=0.248 Sum_probs=208.8
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCce
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~ 203 (407)
+..|++++|+.+|..||+|+.||.++||+.... ....+..|.++|.++.|+..|.+|++++-|+++.+||..++..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~----l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN----LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCch----hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 478999999999999999999999999998754 3335677999999999999999999999999999999988877
Q ss_pred eccccccccc-cce------eeee------------------cCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCC
Q 015438 204 ESLANVTEIH-DGL------DFSA------------------ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (407)
Q Consensus 204 ~~~~~~~~~~-~~~------~~~~------------------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 258 (407)
.+.+.+.... -.+ .|.. ....+|.++|.+|.|+|.|.+|++++.|++++||....
T Consensus 311 ~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred EEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 6554443322 000 1111 01136999999999999999999999999999999998
Q ss_pred CeeeeeeeccCCCeEEEEecCC--------CCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCE
Q 015438 259 NKLSLRILAHTSDVNTVCFGDE--------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (407)
Q Consensus 259 ~~~~~~~~~~~~~v~~i~~s~~--------~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 330 (407)
......+.+|...|..+.|+|. .+..+++++.|++|++||+. .+.++..+..|..+|.+++|+|+|++
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~----~gv~i~~f~kH~~pVysvafS~~g~y 466 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE----SGVPIHTLMKHQEPVYSVAFSPNGRY 466 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc----CCceeEeeccCCCceEEEEecCCCcE
Confidence 8889999999999999999853 34588999999999999998 89999999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCcc-CCCCCcceEEE
Q 015438 331 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL-KHPCDQSVATY 388 (407)
Q Consensus 331 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~v~~~ 388 (407)
+|+|+.||.|.+|+.++++....... ...|..+.|+.+|..| ++..|+.+.+.
T Consensus 467 lAsGs~dg~V~iws~~~~~l~~s~~~-----~~~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTKTGKLVKSYQG-----TGGIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred EEecCCCCeeEeccccchheeEeecC-----CCeEEEEEEcCCCCEEEEEecCCCceEE
Confidence 99999999999999999988765422 2236667777777555 34566666554
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.9e-35 Score=250.71 Aligned_cols=255 Identities=18% Similarity=0.271 Sum_probs=218.6
Q ss_pred eeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEE
Q 015438 108 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (407)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 187 (407)
+|+-..-.-..++..|..+|.++.|+++|.++++|..+|.|++|+..-. .+ ......|...|++++|+|+...++++
T Consensus 122 LWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nV--k~~~ahh~eaIRdlafSpnDskF~t~ 198 (464)
T KOG0284|consen 122 LWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NV--KIIQAHHAEAIRDLAFSPNDSKFLTC 198 (464)
T ss_pred EecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hh--HHhhHhhhhhhheeccCCCCceeEEe
Confidence 4444344444577899999999999999999999999999999997643 11 12233444789999999999999999
Q ss_pred eCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeec
Q 015438 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (407)
Q Consensus 188 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 267 (407)
+.||+|+|||....+....+. ||.-.|.++.|+|.-.+|++|+.|..|++||.++++++.++..
T Consensus 199 SdDg~ikiWdf~~~kee~vL~----------------GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~ 262 (464)
T KOG0284|consen 199 SDDGTIKIWDFRMPKEERVLR----------------GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG 262 (464)
T ss_pred cCCCeEEEEeccCCchhheec----------------cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh
Confidence 999999999998776554442 5777899999999999999999999999999999999999999
Q ss_pred cCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecC-CCCEEEEEeCCCcEEEEECC
Q 015438 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIR 346 (407)
Q Consensus 268 ~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 346 (407)
|...|..+.|+ +++++|+++|.|..++++|+| ..+.+..+++|...|+++.|+| ...+|.+|+.||.|..|.+.
T Consensus 263 HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR----~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 263 HKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIR----TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred ccceEEEEEEc-CCCCeeEEccCCceEEEEehh----HhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 99999999998 788999999999999999999 7888999999999999999999 56788899999999999999
Q ss_pred CCCCcccccCCCccccccceeeeCCCCCCccCCC-CCcceEEEe
Q 015438 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYK 389 (407)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~ 389 (407)
..+++..+ ...+...|..+++.|=|.+|+.+ .|++++.|.
T Consensus 338 ~~~p~~~i---~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 338 LEEPLGEI---PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ccccccCC---CcccccceeeeeccccceeEeecCCCcceeeec
Confidence 76666655 44566677788999999999876 578888886
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.5e-35 Score=247.10 Aligned_cols=256 Identities=20% Similarity=0.308 Sum_probs=214.5
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 015438 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (407)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~ 202 (407)
-...|..+.|.|+|+.|++|+..|.+.+|+... ..-......|..+|+++.|++++.++++|..+|.|++|+..-..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence 357899999999999999999999999999743 22223456799999999999999999999999999999987543
Q ss_pred eeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCC
Q 015438 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282 (407)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~ 282 (407)
...... .|...|++++|+|+...|++++.||+|+|||....+.-..+.+|...|.++.|+ +..
T Consensus 172 Vk~~~a----------------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH-P~k 234 (464)
T KOG0284|consen 172 VKIIQA----------------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH-PTK 234 (464)
T ss_pred hHHhhH----------------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC-Ccc
Confidence 322211 244689999999999999999999999999999988888899999999999999 666
Q ss_pred CEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCcccc
Q 015438 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE 362 (407)
Q Consensus 283 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (407)
.++++|+.|+.|++||.| ++.++.++.+|...|.++.|+|++++|+|+|.|..++++|+++++.+..+ ..+.
T Consensus 235 gLiasgskDnlVKlWDpr----Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~----r~Hk 306 (464)
T KOG0284|consen 235 GLIASGSKDNLVKLWDPR----SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY----RGHK 306 (464)
T ss_pred ceeEEccCCceeEeecCC----CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh----hcch
Confidence 799999999999999999 99999999999999999999999999999999999999999999888764 4455
Q ss_pred ccceeeeCCCCC-Ccc-CCCCCcceEEEeCC----------ccceeeEEEeeCCCC
Q 015438 363 WDYRWMDYPPQA-RDL-KHPCDQSVATYKGH----------SVLRTLIRCHFSPVY 406 (407)
Q Consensus 363 ~~v~~~~~~~~~-~~l-~~~~~~~v~~~~gh----------~~~~~~~~~~fsp~~ 406 (407)
-++..++++|-. .++ +.+.|+.+.-|.-- .....+....|+|-+
T Consensus 307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlG 362 (464)
T KOG0284|consen 307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLG 362 (464)
T ss_pred hhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccc
Confidence 667777777753 344 45678888888622 222367778888853
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-33 Score=236.10 Aligned_cols=262 Identities=17% Similarity=0.250 Sum_probs=228.3
Q ss_pred ccccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCC
Q 015438 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (407)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (407)
-+..+..+.+...+....+.+|...|..++|+..|+++|+++.|-.+++||.++. ........+|...|.++.|-|.|
T Consensus 128 ~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~g 205 (406)
T KOG0295|consen 128 EDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLG 205 (406)
T ss_pred CCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecC
Confidence 3556667788888888889999999999999999999999999999999999863 22333456677789999999999
Q ss_pred CeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCee
Q 015438 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (407)
Q Consensus 182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 261 (407)
.++++++.|.+|+.|++.++-+...+. +|+..|..++.+.||.++++++.|.+|++|-+.++++
T Consensus 206 d~ilS~srD~tik~We~~tg~cv~t~~----------------~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~ 269 (406)
T KOG0295|consen 206 DHILSCSRDNTIKAWECDTGYCVKTFP----------------GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQC 269 (406)
T ss_pred CeeeecccccceeEEecccceeEEecc----------------CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchh
Confidence 999999999999999999998766554 5777999999999999999999999999999999999
Q ss_pred eeeeeccCCCeEEEEecCC--------------CCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCC
Q 015438 262 SLRILAHTSDVNTVCFGDE--------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (407)
Q Consensus 262 ~~~~~~~~~~v~~i~~s~~--------------~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 327 (407)
...++.|..+|.+++|.|. .++++.+++.|++|++||+. .+.++.++.+|...|..++|+|.
T Consensus 270 k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~----tg~cL~tL~ghdnwVr~~af~p~ 345 (406)
T KOG0295|consen 270 KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS----TGMCLFTLVGHDNWVRGVAFSPG 345 (406)
T ss_pred hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc----CCeEEEEEecccceeeeeEEcCC
Confidence 9999999999999999642 23699999999999999998 99999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCC-CCcceEEEe
Q 015438 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYK 389 (407)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~ 389 (407)
|+||+++.+|+++++||+++.++..+. ..+..-++.++|+.+..++..+ -|..+++|.
T Consensus 346 Gkyi~ScaDDktlrvwdl~~~~cmk~~----~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 346 GKYILSCADDKTLRVWDLKNLQCMKTL----EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CeEEEEEecCCcEEEEEeccceeeecc----CCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 999999999999999999998887664 3566678888998877655544 477777774
No 17
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.6e-33 Score=234.04 Aligned_cols=249 Identities=18% Similarity=0.193 Sum_probs=220.6
Q ss_pred ccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC
Q 015438 112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (407)
Q Consensus 112 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 191 (407)
.|.+...++.+|.+-|.|+++.|...+|++|+.|++|+|||+.+|... ....+|...|..+++|+-..|+++++.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk---ltltGhi~~vr~vavS~rHpYlFs~gedk 215 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK---LTLTGHIETVRGVAVSKRHPYLFSAGEDK 215 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE---EeecchhheeeeeeecccCceEEEecCCC
Confidence 444555688999999999999999999999999999999999998433 34667888999999999999999999999
Q ss_pred eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCC
Q 015438 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (407)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 271 (407)
.|+.||++..+.+.-. .||-..|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+
T Consensus 216 ~VKCwDLe~nkvIR~Y----------------hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~ 279 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHY----------------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP 279 (460)
T ss_pred eeEEEechhhhhHHHh----------------ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc
Confidence 9999999988765433 268889999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCc
Q 015438 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (407)
Q Consensus 272 v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (407)
|.++.+.|.++ .+++|+.|++|++||++ .++....+..|...|.+++.+|....+|+++.| .|+-|++..+.-.
T Consensus 280 V~~V~~~~~dp-qvit~S~D~tvrlWDl~----agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~ 353 (460)
T KOG0285|consen 280 VASVMCQPTDP-QVITGSHDSTVRLWDLR----AGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFL 353 (460)
T ss_pred ceeEEeecCCC-ceEEecCCceEEEeeec----cCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchh
Confidence 99999985555 57799999999999999 889999999999999999999999999998866 5999999987766
Q ss_pred ccccCCCccccccceeeeCCCCCCccCCCCCcceEEEe
Q 015438 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 389 (407)
Q Consensus 352 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~ 389 (407)
.. ...+..-+..++...|+-+++.++.+.+..|+
T Consensus 354 ~n----lsgh~~iintl~~nsD~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 354 QN----LSGHNAIINTLSVNSDGVLVSGGDNGSIMFWD 387 (460)
T ss_pred hc----cccccceeeeeeeccCceEEEcCCceEEEEEe
Confidence 54 45566678889999999999999989998886
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=250.49 Aligned_cols=264 Identities=17% Similarity=0.237 Sum_probs=217.5
Q ss_pred ceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEE
Q 015438 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (407)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 185 (407)
..+|.+....-.....+|...+.+++++|||+++|+|+.||.|+|||...+-+.. ++..|...|+.+.|+..++.++
T Consensus 332 LlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v---TFteHts~Vt~v~f~~~g~~ll 408 (893)
T KOG0291|consen 332 LLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV---TFTEHTSGVTAVQFTARGNVLL 408 (893)
T ss_pred EEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE---EeccCCCceEEEEEEecCCEEE
Confidence 3456665555566678999999999999999999999999999999999985554 5778888999999999999999
Q ss_pred EEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCC-eEEEEEcCCCeeeee
Q 015438 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLR 264 (407)
Q Consensus 186 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~ 264 (407)
+++.||+|+.||+........+..+.. ....|++..|.|.++++|+.|. .|.+|++++|+.+-.
T Consensus 409 ssSLDGtVRAwDlkRYrNfRTft~P~p---------------~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKRYRNFRTFTSPEP---------------IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI 473 (893)
T ss_pred EeecCCeEEeeeecccceeeeecCCCc---------------eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence 999999999999987766555443322 2578899999999999998875 599999999999999
Q ss_pred eeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEE
Q 015438 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (407)
Q Consensus 265 ~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd 344 (407)
+.+|.++|.+++|+ +.+..|++++.|.+||+||+-. ....+.++. +...++.++|+|+|+.|++++.||.|.+||
T Consensus 474 LsGHEgPVs~l~f~-~~~~~LaS~SWDkTVRiW~if~---s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 474 LSGHEGPVSGLSFS-PDGSLLASGSWDKTVRIWDIFS---SSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred hcCCCCcceeeEEc-cccCeEEeccccceEEEEEeec---cCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 99999999999998 8899999999999999999962 222344443 667899999999999999999999999999
Q ss_pred CCCCCCccccc----------------CCCccccccceeeeCCCCCCcc-CCCCCcceEEEeCCc
Q 015438 345 IRKMSSNASCN----------------LGFRSYEWDYRWMDYPPQARDL-KHPCDQSVATYKGHS 392 (407)
Q Consensus 345 ~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~v~~~~gh~ 392 (407)
+..+.+...+. .......-.++.+.|++||..+ +.+..+.|++|+.-.
T Consensus 549 ~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 549 IKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred hhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 99877764432 1122233557889999998555 556678899997544
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=219.47 Aligned_cols=260 Identities=16% Similarity=0.231 Sum_probs=205.5
Q ss_pred ceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEE
Q 015438 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (407)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 185 (407)
+.+|....+.....+..-.+.|+.+...|+++.||+++. -.|++||+.++... ......+|...|+++.|..+|+.++
T Consensus 22 IRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dgrWMy 99 (311)
T KOG0315|consen 22 IRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDGRWMY 99 (311)
T ss_pred eeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-ceeEEeccCCceEEEEEeecCeEEE
Confidence 334444444455566666889999999999999999865 67999999987543 3456677888899999999999999
Q ss_pred EEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeee
Q 015438 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265 (407)
Q Consensus 186 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 265 (407)
+|+.||+++|||++...+...+. +..+|+++..+|+...|++|.++|.|++||+....+...+
T Consensus 100 TgseDgt~kIWdlR~~~~qR~~~-----------------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 100 TGSEDGTVKIWDLRSLSCQRNYQ-----------------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL 162 (311)
T ss_pred ecCCCceEEEEeccCcccchhcc-----------------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence 99999999999999876655554 4458999999999999999999999999999988766655
Q ss_pred e-ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCccc--CCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEE
Q 015438 266 L-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL--NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 342 (407)
Q Consensus 266 ~-~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~i 342 (407)
. .....|.++... ++|.+++.+...|.+.+|++-.. .....|+..++.|...+..+.+|||+++|+++|.|.+++|
T Consensus 163 iPe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~i 241 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKI 241 (311)
T ss_pred CCCCCcceeeEEEc-CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEE
Confidence 3 334678999997 89999999999999999998532 1245677788999999999999999999999999999999
Q ss_pred EECCCCCCcccccCCCccccccceeeeCCCCCCccCC-CCCcceEEE
Q 015438 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH-PCDQSVATY 388 (407)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~v~~~ 388 (407)
|++..+-.+.....++..+.|+ .+||.++++|.. +.|..++.|
T Consensus 242 wn~~~~~kle~~l~gh~rWvWd---c~FS~dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 242 WNTDDFFKLELVLTGHQRWVWD---CAFSADGEYLVTASSDHTARLW 285 (311)
T ss_pred EecCCceeeEEEeecCCceEEe---eeeccCccEEEecCCCCceeec
Confidence 9999982222222334445554 468888877754 344444444
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.8e-32 Score=255.04 Aligned_cols=260 Identities=24% Similarity=0.317 Sum_probs=211.4
Q ss_pred cCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCC
Q 015438 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (407)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~ 201 (407)
.|...|.++.|+++|+.+++++.++.+++|+....+. .......+|...|.+++|+|+++++++++.|++|+|||+...
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 3488999999999999999999999999999976642 122233678889999999999999999999999999999433
Q ss_pred -ceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCC
Q 015438 202 -TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (407)
Q Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~ 280 (407)
.....+. +|...|++++|+|+++++++|+.|++|++||+++++++..+.+|.+.|++++|+ +
T Consensus 236 ~~~~~~l~----------------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~-~ 298 (456)
T KOG0266|consen 236 GRNLKTLK----------------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS-P 298 (456)
T ss_pred CeEEEEec----------------CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC-C
Confidence 4433332 688899999999999999999999999999999999999999999999999997 8
Q ss_pred CCCEEEEEeCCCcEEEEeCcccCCCCc--eeeeeccccCC--eEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccC
Q 015438 281 SGHLIYSGSDDNLCKVWDRRCLNVKGK--PAGVLMGHLEG--ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (407)
Q Consensus 281 ~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~--i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (407)
++++|++++.|+.|++||+. .+. ++..+.++... ++.+.|+|++.+|++++.|+.+++||++..+.+.....
T Consensus 299 d~~~l~s~s~d~~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLE----TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred CCCEEEEcCCCccEEEEECC----CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 99999999999999999998 666 56677776655 99999999999999999999999999999888776543
Q ss_pred CCccccccceeeeCCCCCCccCCC-CCcceEEEe-----------CCccceeeEEEeeCCC
Q 015438 357 GFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYK-----------GHSVLRTLIRCHFSPV 405 (407)
Q Consensus 357 ~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~-----------gh~~~~~~~~~~fsp~ 405 (407)
.... ...+....+++.+.++.++ .|..|..|+ ||+ ...+..++++|.
T Consensus 375 ~~~~-~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 375 HSNL-VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPT 433 (456)
T ss_pred cCCc-ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCC
Confidence 2222 1344444556677666554 466666665 563 235666677664
No 21
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.4e-33 Score=244.40 Aligned_cols=258 Identities=20% Similarity=0.273 Sum_probs=216.8
Q ss_pred eeeeccCCCCcccccCCCceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEE
Q 015438 108 LSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (407)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 186 (407)
...++|.+....+.+|+..|.++.|.| .+.+|++++.|+.|+||++.... .......+|..+|.+++|+++|..+++
T Consensus 198 ~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~s~~g~~fLS 275 (503)
T KOG0282|consen 198 ERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASFNNCGTSFLS 275 (503)
T ss_pred ceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhccccCCeeee
Confidence 456788888999999999999999999 89999999999999999998732 223357789999999999999999999
Q ss_pred EeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCCeeeeee
Q 015438 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI 265 (407)
Q Consensus 187 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~ 265 (407)
++.|+.|++||+++|++...+.... .++|+.|+|++ +.+++|+.|+.|+.||+++++.+..+
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~~~-----------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHLDK-----------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred eecceeeeeeccccceEEEEEecCC-----------------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence 9999999999999999877765443 57899999998 79999999999999999999999999
Q ss_pred eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccC----------------------------C-------------
Q 015438 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN----------------------------V------------- 304 (407)
Q Consensus 266 ~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~----------------------------~------------- 304 (407)
..|-+.|..+.|- +++..+++++.|+.++||+.+..- .
T Consensus 339 d~hLg~i~~i~F~-~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~ 417 (503)
T KOG0282|consen 339 DRHLGAILDITFV-DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP 417 (503)
T ss_pred HhhhhheeeeEEc-cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccc
Confidence 9999999999997 889999999999999999986110 0
Q ss_pred -CCceeeeecccc--CCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCC--CCccCC
Q 015438 305 -KGKPAGVLMGHL--EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ--ARDLKH 379 (407)
Q Consensus 305 -~~~~~~~~~~~~--~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~ 379 (407)
.......+.||. +.-..+.|||||++|++|+.||.+.+||.++.+.... .+.+..++..+.|.|. ..++++
T Consensus 418 ~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~----lkah~~~ci~v~wHP~e~Skvat~ 493 (503)
T KOG0282|consen 418 FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK----LKAHDQPCIGVDWHPVEPSKVATC 493 (503)
T ss_pred cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhc----cccCCcceEEEEecCCCcceeEec
Confidence 011112344553 3456788999999999999999999999999877665 3455667777888876 477788
Q ss_pred CCCcceEEEe
Q 015438 380 PCDQSVATYK 389 (407)
Q Consensus 380 ~~~~~v~~~~ 389 (407)
+.++.|++|+
T Consensus 494 ~w~G~Ikiwd 503 (503)
T KOG0282|consen 494 GWDGLIKIWD 503 (503)
T ss_pred ccCceeEecC
Confidence 8899999884
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.2e-32 Score=217.07 Aligned_cols=213 Identities=21% Similarity=0.277 Sum_probs=182.4
Q ss_pred CCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEE
Q 015438 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (407)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~v 195 (407)
+...+++|+..|.++.|..+|+++++|+.||+++|||++.-.. . ....+..+|+++..+|+...|++|..+|.|++
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~-q---R~~~~~spVn~vvlhpnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC-Q---RNYQHNSPVNTVVLHPNQTELISGDQSGNIRV 150 (311)
T ss_pred ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc-c---hhccCCCCcceEEecCCcceEEeecCCCcEEE
Confidence 4567899999999999999999999999999999999987322 2 22345578999999999999999999999999
Q ss_pred EECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC------eeeeeeeccC
Q 015438 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN------KLSLRILAHT 269 (407)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~ 269 (407)
||+....+....... ....|.++...|||.+++.+...|..++|++-.. +++.+++.|.
T Consensus 151 WDl~~~~c~~~liPe---------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~ 215 (311)
T KOG0315|consen 151 WDLGENSCTHELIPE---------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN 215 (311)
T ss_pred EEccCCccccccCCC---------------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc
Confidence 999877554332211 1137999999999999999999999999998654 3667788999
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 015438 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (407)
Q Consensus 270 ~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 349 (407)
+.+..+.+| |++++|++++.|.+++||+.... .+....+.+|...+..++||.||+||+||+.|+.+++||+..++
T Consensus 216 ~~il~C~lS-Pd~k~lat~ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 216 GHILRCLLS-PDVKYLATCSSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred ceEEEEEEC-CCCcEEEeecCCceEEEEecCCc---eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 999999998 89999999999999999999722 25566788999999999999999999999999999999999976
Q ss_pred Cc
Q 015438 350 SN 351 (407)
Q Consensus 350 ~~ 351 (407)
.+
T Consensus 292 ~v 293 (311)
T KOG0315|consen 292 EV 293 (311)
T ss_pred ee
Confidence 54
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.3e-32 Score=227.47 Aligned_cols=289 Identities=19% Similarity=0.244 Sum_probs=250.8
Q ss_pred cccchhhhccCccCccC------CCcee--ccccccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEE
Q 015438 78 LPVSTVKMLAGREGNYS------GRGRF--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIR 149 (407)
Q Consensus 78 ~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~ 149 (407)
.|+...+++.+|...+. ++..| .+.|+...+|++...+....+.+|-..|..+++|+--.|+++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 57899999999987652 34444 56788888999999999999999999999999999999999999999999
Q ss_pred EEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCcccc
Q 015438 150 IYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG 229 (407)
Q Consensus 150 iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (407)
.||++..+.+. ...+|-..|.+++.+|.-..|++|+.|.+++|||+++......+. ||...
T Consensus 219 CwDLe~nkvIR---~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~----------------GH~~~ 279 (460)
T KOG0285|consen 219 CWDLEYNKVIR---HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS----------------GHTNP 279 (460)
T ss_pred EEechhhhhHH---HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec----------------CCCCc
Confidence 99999875443 467888899999999999999999999999999999886554432 68889
Q ss_pred EEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCcee
Q 015438 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 309 (407)
Q Consensus 230 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 309 (407)
|.++.+.|....+++|+.|++|++||++.++.+..+..|...|.+++.+ |....|++++.| .|+-|++. .+..+
T Consensus 280 V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lh-P~e~~fASas~d-nik~w~~p----~g~f~ 353 (460)
T KOG0285|consen 280 VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLH-PKENLFASASPD-NIKQWKLP----EGEFL 353 (460)
T ss_pred ceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecC-CchhhhhccCCc-cceeccCC----ccchh
Confidence 9999999988889999999999999999999999999999999999998 778889999887 69999998 88889
Q ss_pred eeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCccccc----CCCccccccceeeeCCCCC-CccCCCCCcc
Q 015438 310 GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN----LGFRSYEWDYRWMDYPPQA-RDLKHPCDQS 384 (407)
Q Consensus 310 ~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~ 384 (407)
..+.+|..-|.+++.+.|| ++++|+++|.+.+||.+++-..+..+ .+.-..+..|....|...+ |++.+..|.+
T Consensus 354 ~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKt 432 (460)
T KOG0285|consen 354 QNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKT 432 (460)
T ss_pred hccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcc
Confidence 9999999999999998776 68899999999999999886655442 3344455667888898776 8889999999
Q ss_pred eEEEeCCc
Q 015438 385 VATYKGHS 392 (407)
Q Consensus 385 v~~~~gh~ 392 (407)
|++|+-..
T Consensus 433 Ik~~keDe 440 (460)
T KOG0285|consen 433 IKMYKEDE 440 (460)
T ss_pred eEEEeccc
Confidence 99998654
No 24
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.9e-32 Score=212.59 Aligned_cols=265 Identities=18% Similarity=0.238 Sum_probs=220.6
Q ss_pred ccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC
Q 015438 112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (407)
Q Consensus 112 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 191 (407)
.|++...+++.+.++|.++.|+-+|+|.++++.|.+|++|++..+..+. ...+|...|.+++.+.|+..+++|+.|.
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeeccccccccccccCCCCc
Confidence 4677788899999999999999999999999999999999999885554 4677888999999999999999999999
Q ss_pred eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC--eeeeeeeccC
Q 015438 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAHT 269 (407)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~ 269 (407)
.+.+||+++++....+. +|.+.|+.++|+.+...+++|+.|..+++||.++. +++..+....
T Consensus 82 ~v~vwDV~TGkv~Rr~r----------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFR----------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred eEEEEEcccCeeeeecc----------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 99999999998766554 68889999999999999999999999999999865 5777787778
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 015438 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (407)
Q Consensus 270 ~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 349 (407)
..|.+|..+ ++.+++|+.||++|.||+| .+....-+.+| +|++++|++|++..++++.|+++++.|-.+++
T Consensus 146 D~V~Si~v~---~heIvaGS~DGtvRtydiR----~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGk 216 (307)
T KOG0316|consen 146 DGVSSIDVA---EHEIVAGSVDGTVRTYDIR----KGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGK 216 (307)
T ss_pred CceeEEEec---ccEEEeeccCCcEEEEEee----cceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhH
Confidence 899999885 6789999999999999999 77776666554 89999999999999999999999999999999
Q ss_pred CcccccCCCccccccceeeeCCCCCCccCCCCCcceEEEeC---C-------ccceeeEEEeeCCC
Q 015438 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG---H-------SVLRTLIRCHFSPV 405 (407)
Q Consensus 350 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~g---h-------~~~~~~~~~~fsp~ 405 (407)
.+..... +...+..+.+--...+...+..+.|+.+..|+- + .....++.+.++|-
T Consensus 217 lL~sYkG-hkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 217 LLKSYKG-HKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPT 281 (307)
T ss_pred HHHHhcc-cccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccC
Confidence 8877633 444555555444444556666677888888862 1 11223567777763
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-31 Score=248.71 Aligned_cols=262 Identities=26% Similarity=0.312 Sum_probs=217.5
Q ss_pred ccccceeeeeccCC--CCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCC-CeEEeEeeeccccceEEEEEEEC
Q 015438 102 ADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLS 178 (407)
Q Consensus 102 ~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s 178 (407)
.+.....+...... ....+.+|...|.+++|+|+++++++++.|++|+|||+.. +..+ ....+|...|++++|+
T Consensus 179 ~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~---~~l~gH~~~v~~~~f~ 255 (456)
T KOG0266|consen 179 SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL---KTLKGHSTYVTSVAFS 255 (456)
T ss_pred CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEE---EEecCCCCceEEEEec
Confidence 33444455543333 4556689999999999999999999999999999999943 3333 3456899999999999
Q ss_pred CCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCC
Q 015438 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (407)
Q Consensus 179 p~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 258 (407)
|+++++++|+.|++|+|||++++++...+. +|...|++++|++++++|++++.|+.|++||+.+
T Consensus 256 p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~----------------~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~ 319 (456)
T KOG0266|consen 256 PDGNLLVSGSDDGTVRIWDVRTGECVRKLK----------------GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET 319 (456)
T ss_pred CCCCEEEEecCCCcEEEEeccCCeEEEeee----------------ccCCceEEEEECCCCCEEEEcCCCccEEEEECCC
Confidence 999999999999999999999977665443 5778999999999999999999999999999999
Q ss_pred Ce--eeeeeeccCCC--eEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCe---EEEEecCCCCEE
Q 015438 259 NK--LSLRILAHTSD--VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI---TFIDSRGDGRYL 331 (407)
Q Consensus 259 ~~--~~~~~~~~~~~--v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i---~~~~~s~~~~~l 331 (407)
+. ++..+..+... +++++|+ +++.++++++.|+.+++||++ .+..+..+.+|...+ .+...++.+.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~fs-p~~~~ll~~~~d~~~~~w~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (456)
T KOG0266|consen 320 GSKLCLKLLSGAENSAPVTSVQFS-PNGKYLLSASLDRTLKLWDLR----SGKSVGTYTGHSNLVRCIFSPTLSTGGKLI 394 (456)
T ss_pred CceeeeecccCCCCCCceeEEEEC-CCCcEEEEecCCCeEEEEEcc----CCcceeeecccCCcceeEecccccCCCCeE
Confidence 98 56677666655 9999998 899999999999999999998 888889999888753 344457899999
Q ss_pred EEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCC---CcceEEEeC
Q 015438 332 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC---DQSVATYKG 390 (407)
Q Consensus 332 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~~v~~~~g 390 (407)
++|+.|+.|.+||+.++..+..+... . ...+..+.+++...+++... |..+.+|+.
T Consensus 395 ~sg~~d~~v~~~~~~s~~~~~~l~~h-~--~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 395 YSGSEDGSVYVWDSSSGGILQRLEGH-S--KAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred EEEeCCceEEEEeCCccchhhhhcCC-C--CCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 99999999999999997776655331 1 66677888999988887764 888888864
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.7e-30 Score=227.84 Aligned_cols=261 Identities=27% Similarity=0.383 Sum_probs=217.0
Q ss_pred cccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEE
Q 015438 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd 197 (407)
..+.+|.++|.+++|+|++++|++++.+|.|++|++.++.... ....|...+..+.|+|+++++++++.+|.|++|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 4567899999999999999999999999999999998764333 2345666788999999999999999999999999
Q ss_pred CCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEe
Q 015438 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (407)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 277 (407)
+.+++...... .|...+.++.|+++++++++++.++.|.+||+++++....+..|...+.+++|
T Consensus 80 ~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 80 LETGECVRTLT----------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred cCcccceEEEe----------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 98764332221 24457999999999888888888999999999999888888889999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCC
Q 015438 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (407)
Q Consensus 278 s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (407)
+ +++.++++++.|+.|++||++ .++++..+..|...|.+++|+|+++.+++++.|+.|++||+++.+....+
T Consensus 144 ~-~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~--- 215 (289)
T cd00200 144 S-PDGTFVASSSQDGTIKLWDLR----TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL--- 215 (289)
T ss_pred c-CcCCEEEEEcCCCcEEEEEcc----ccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch---
Confidence 8 668888888889999999998 77788888889889999999999999999999999999999987665543
Q ss_pred CccccccceeeeCCCCCCccCCCC-CcceEEEeCCc---------cceeeEEEeeCCCC
Q 015438 358 FRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHS---------VLRTLIRCHFSPVY 406 (407)
Q Consensus 358 ~~~~~~~v~~~~~~~~~~~l~~~~-~~~v~~~~gh~---------~~~~~~~~~fsp~~ 406 (407)
..+...+..+.|+|++.++.++. ++.+.+|+... ....+..+.|+|+.
T Consensus 216 -~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 273 (289)
T cd00200 216 -RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDG 273 (289)
T ss_pred -hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCC
Confidence 23344788899999988888777 88888887542 11246777888864
No 27
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.7e-30 Score=260.56 Aligned_cols=267 Identities=17% Similarity=0.256 Sum_probs=208.3
Q ss_pred ccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCC----eEEeEeeeccccceEEEEEEECC-CCCeEEEEeCCCeE
Q 015438 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIV 193 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~i 193 (407)
.+..|.+.|.+++|+|+|++||+|+.|+.|+||++... ...........+...|.+++|+| ++.+|++++.||.|
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 34569999999999999999999999999999997542 11110111112234689999987 47899999999999
Q ss_pred EEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeC-CCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCe
Q 015438 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (407)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 272 (407)
++||+.+++..... .+|...|++++|+| ++.+|++|+.|+.|++||++++..+..+.. ...+
T Consensus 558 ~lWd~~~~~~~~~~----------------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v 620 (793)
T PLN00181 558 QVWDVARSQLVTEM----------------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANI 620 (793)
T ss_pred EEEECCCCeEEEEe----------------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-CCCe
Confidence 99999877543322 14777899999997 788999999999999999999988888764 4689
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCc-eeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCc
Q 015438 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (407)
Q Consensus 273 ~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (407)
.++.|+++++.+|++|+.|+.|++||++ ... ++..+.+|...|+++.|. ++.+|++++.|++|++||++.....
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~----~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLR----NPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECC----CCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence 9999977889999999999999999998 433 567788999999999997 7889999999999999999864211
Q ss_pred c--cccCCCccccccceeeeCCCCCCccCCC-CCcceEEEeCCc----------------------cceeeEEEeeCCCC
Q 015438 352 A--SCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYKGHS----------------------VLRTLIRCHFSPVY 406 (407)
Q Consensus 352 ~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~gh~----------------------~~~~~~~~~fsp~~ 406 (407)
. ........+...+..+.|++++.+|+++ .|+.+.+|+-.. ....+..++|+|+.
T Consensus 696 ~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 696 INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 0 1111133455667789999998888765 589999997321 11357889999986
Q ss_pred C
Q 015438 407 R 407 (407)
Q Consensus 407 ~ 407 (407)
+
T Consensus 776 ~ 776 (793)
T PLN00181 776 S 776 (793)
T ss_pred C
Confidence 3
No 28
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-30 Score=224.97 Aligned_cols=275 Identities=20% Similarity=0.239 Sum_probs=216.2
Q ss_pred ccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC
Q 015438 112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (407)
Q Consensus 112 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 191 (407)
.|-+-...+..|..=|+|+.|+|||.++|+++.||.|.|||=.+++.+..+.....|.+.|.+++|+||++.+++++.|.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 34444445678999999999999999999999999999999999988888777778999999999999999999999999
Q ss_pred eEEEEECCCCceeccccccccccce------------eee---------------ecCCCCccccEEEEEEeCCCCEEEE
Q 015438 192 IVHIVDVGSGTMESLANVTEIHDGL------------DFS---------------AADDGGYSFGIFSLKFSTDGRELVA 244 (407)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~------------~~~---------------~~~~~~~~~~v~~~~~s~~~~~l~~ 244 (407)
+++|||+.+.++.....+....+.. .++ .....||...|+++..+|++++|++
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S 337 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS 337 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe
Confidence 9999999998776555443321110 000 0112579999999999999999999
Q ss_pred eeCCCeEEEEEcCCCeee-----------eeeecc---------------------------------------------
Q 015438 245 GSSDDCIYVYDLEANKLS-----------LRILAH--------------------------------------------- 268 (407)
Q Consensus 245 ~~~dg~i~i~d~~~~~~~-----------~~~~~~--------------------------------------------- 268 (407)
|+.||.|.-||..++..- ..+..+
T Consensus 338 gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~ 417 (603)
T KOG0318|consen 338 GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDG 417 (603)
T ss_pred eccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCC
Confidence 999999999998765321 001000
Q ss_pred -------------------------CCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEE
Q 015438 269 -------------------------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (407)
Q Consensus 269 -------------------------~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~ 323 (407)
.-...+++++ ++++.++.|+.|+.|+||.+... .......+..|.++|+.++
T Consensus 418 ~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~-~~~~~vaVGG~Dgkvhvysl~g~--~l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 418 GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS-PDGSEVAVGGQDGKVHVYSLSGD--ELKEEAKLLEHRAAITDVA 494 (603)
T ss_pred CEEEEEecCcEEEEecCCcceeeccccccceEEEc-CCCCEEEEecccceEEEEEecCC--cccceeeeecccCCceEEE
Confidence 0112466777 78899999999999999999621 1133445667999999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCC-CcceEEEeCCc
Q 015438 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHS 392 (407)
Q Consensus 324 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~v~~~~gh~ 392 (407)
++||+.|||+|...+.+.+||+.+.+..... ..-|...|.+++++|+..+++.++ |.+|.+|.-..
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~~~~~---w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREVKTNR---WAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCceecce---eeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 9999999999999999999999987763322 445677899999999999988765 78888887443
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9e-31 Score=226.23 Aligned_cols=266 Identities=18% Similarity=0.249 Sum_probs=208.3
Q ss_pred ccCCCCcccccCCCceEEEEECCCCC-EEEEEeCCCeEEEEEcCCC-eEEeE------ee----eccccceEEEEEEECC
Q 015438 112 LPVNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERG-WKIQK------DI----LAKSLRWTVTDTSLSP 179 (407)
Q Consensus 112 ~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~------~~----~~~~~~~~v~~~~~sp 179 (407)
.|.....++. |..+|.+++|+|... .+++|+.|...++|++... ..... .. ........|++++|+.
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~ 245 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN 245 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC
Confidence 4444444555 999999999999877 8999999999999998641 00000 00 0011234599999999
Q ss_pred CCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC
Q 015438 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (407)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 259 (407)
+|..||+|+.||.+++|+........+- .|+++|.++.|+..|.+|++++.|+++.+||..++
T Consensus 246 ~G~~LatG~~~G~~riw~~~G~l~~tl~-----------------~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDGNLISTLG-----------------QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred CCCeEEEeecCcEEEEEecCchhhhhhh-----------------ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence 9999999999999999998765432222 37789999999999999999999999999999999
Q ss_pred eeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCc
Q 015438 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 339 (407)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~ 339 (407)
.....+.-|..+-.+|.| .+..-|++++.|+.|+|+-+. ...|+.++.+|.+.|.++.|+|.|.+|++++.|++
T Consensus 309 ~~~q~f~~~s~~~lDVdW--~~~~~F~ts~td~~i~V~kv~----~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T 382 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDW--QSNDEFATSSTDGCIHVCKVG----EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT 382 (524)
T ss_pred eEEEeeeeccCCccceEE--ecCceEeecCCCceEEEEEec----CCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence 999999889988788999 466779999999999999998 88999999999999999999999999999999999
Q ss_pred EEEEECCCCCCcccccCCCccccccceeeeCCCCC----------CccCCCCCcceEEEe-----------CCccceeeE
Q 015438 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA----------RDLKHPCDQSVATYK-----------GHSVLRTLI 398 (407)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~~~v~~~~-----------gh~~~~~~~ 398 (407)
++||++........+ ..+...|..+.++|++ .+++++.|.+|+.|+ .|.. +|.
T Consensus 383 lkiWs~~~~~~~~~l----~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVy 456 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDL----QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVY 456 (524)
T ss_pred eEeeecCCCcchhhh----hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceE
Confidence 999998776554433 2333333334444443 233444555555554 5654 899
Q ss_pred EEeeCCCCC
Q 015438 399 RCHFSPVYR 407 (407)
Q Consensus 399 ~~~fsp~~~ 407 (407)
.+.|||+.|
T Consensus 457 svafS~~g~ 465 (524)
T KOG0273|consen 457 SVAFSPNGR 465 (524)
T ss_pred EEEecCCCc
Confidence 999999975
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-31 Score=224.50 Aligned_cols=249 Identities=19% Similarity=0.205 Sum_probs=219.0
Q ss_pred CCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEE
Q 015438 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (407)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~ 194 (407)
..++.+.+|..+|+.+-|+|+-...++++.|.+|++||..++.. .....+|...|.++.|+..|++|++++.|-.+.
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---ERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh---hhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 55678889999999999999999999999999999999999855 335778888899999999999999999999999
Q ss_pred EEECCCC-ceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeE
Q 015438 195 IVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 273 (407)
Q Consensus 195 vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 273 (407)
+||..+. ++... .-+|...|.++.|-|.|.+|++++.|.+|++|++.++-++.++.+|..-|.
T Consensus 176 LWd~~~~~~c~ks----------------~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr 239 (406)
T KOG0295|consen 176 LWDFDTFFRCIKS----------------LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR 239 (406)
T ss_pred heeHHHHHHHHHH----------------hcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE
Confidence 9998753 11111 114666899999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCC---------------CCEEEEEeCCC
Q 015438 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---------------GRYLISNGKDQ 338 (407)
Q Consensus 274 ~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---------------~~~l~s~~~dg 338 (407)
.+..+ .+|.++++++.|.+|++|-+. ++.+...++.|.-+|-+++|.|. +.++.+++.|+
T Consensus 240 ~v~v~-~DGti~As~s~dqtl~vW~~~----t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 240 MVRVN-QDGTIIASCSNDQTLRVWVVA----TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred EEEec-CCeeEEEecCCCceEEEEEec----cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 99998 999999999999999999998 78888899999999999999773 35899999999
Q ss_pred cEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccC-CCCCcceEEEeCC
Q 015438 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK-HPCDQSVATYKGH 391 (407)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~v~~~~gh 391 (407)
+|++||+.++.++.++ .++.--|+.++|+|.|++|. +++|+++++|+-.
T Consensus 315 tIk~wdv~tg~cL~tL----~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTL----VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred eEEEEeccCCeEEEEE----ecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 9999999999888774 55555688999999997774 6788999999743
No 31
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-31 Score=244.60 Aligned_cols=260 Identities=18% Similarity=0.217 Sum_probs=224.1
Q ss_pred ceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEE
Q 015438 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (407)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 185 (407)
+.+|++........|++|.++|..++|+|.+.++++|+.|-.|+||+..+.+++ ....+|-..|..+.|++.-.+++
T Consensus 33 IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl---ftL~GHlDYVRt~~FHheyPWIl 109 (1202)
T KOG0292|consen 33 IQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL---FTLLGHLDYVRTVFFHHEYPWIL 109 (1202)
T ss_pred eeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh---hhhccccceeEEeeccCCCceEE
Confidence 556777777777889999999999999999999999999999999999887444 45778888999999999999999
Q ss_pred EEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCe-----
Q 015438 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----- 260 (407)
Q Consensus 186 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~----- 260 (407)
++|.|.+|+||+..++.++.... ||...|.|.+|+|....++++|-|-+|++||+..-+
T Consensus 110 SASDDQTIrIWNwqsr~~iavlt----------------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 110 SASDDQTIRIWNWQSRKCIAVLT----------------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKA 173 (1202)
T ss_pred EccCCCeEEEEeccCCceEEEEe----------------cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCC
Confidence 99999999999999999877654 688899999999999999999999999999985311
Q ss_pred ------------------------eeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeecccc
Q 015438 261 ------------------------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (407)
Q Consensus 261 ------------------------~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 316 (407)
....+.+|+..|+-++|+ +.-.+|++|+.|..|++|.+... +.-.+.+..+|.
T Consensus 174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-pTlpliVSG~DDRqVKlWrmnet--KaWEvDtcrgH~ 250 (1202)
T KOG0292|consen 174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNET--KAWEVDTCRGHY 250 (1202)
T ss_pred CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec-CCcceEEecCCcceeeEEEeccc--cceeehhhhccc
Confidence 113456899999999998 66679999999999999998622 344567888999
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCCcceEEEeCC
Q 015438 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (407)
Q Consensus 317 ~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh 391 (407)
..|+++-|+|....+++.|+|++|+|||+.+.+.+.++.. ....+-.++-.|...+++.+.|+-+.+|+-.
T Consensus 251 nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr----endRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 251 NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR----ENDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred CCcceEEecCccceeEecCCCccEEEEecccccceeeeec----cCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 9999999999999999999999999999999999887633 3334556778999999999999999888754
No 32
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.98 E-value=1.1e-30 Score=213.73 Aligned_cols=261 Identities=17% Similarity=0.252 Sum_probs=219.7
Q ss_pred cccccceeee-eccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC
Q 015438 101 AADCCHMLSR-YLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (407)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (407)
..|+.+++|+ +-..+..+++.+|.++|..+.|.+|++.+++++.|.+|+.||+++|++..+ ...|..-|+++.-+.
T Consensus 66 G~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk---~k~h~~~vNs~~p~r 142 (338)
T KOG0265|consen 66 GSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK---HKGHTSFVNSLDPSR 142 (338)
T ss_pred CCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh---hccccceeeecCccc
Confidence 3667788888 556688889999999999999999999999999999999999999976654 567777788887443
Q ss_pred CC-CeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCC
Q 015438 180 DQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (407)
Q Consensus 180 ~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 258 (407)
-| .++.+++.|+++++||+++......+. .+.+++++.|..++..+.+|+-|+.|++||++.
T Consensus 143 rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-----------------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~ 205 (338)
T KOG0265|consen 143 RGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-----------------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK 205 (338)
T ss_pred cCCeEEEecCCCceEEEEeecccchhhccc-----------------cceeEEEEEecccccceeeccccCceeeecccc
Confidence 34 456678899999999999887765553 223799999999999999999999999999999
Q ss_pred CeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccC----CeEEEEecCCCCEEEEE
Q 015438 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE----GITFIDSRGDGRYLISN 334 (407)
Q Consensus 259 ~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~s~ 334 (407)
+.....+.+|..+|+.+..+ ++|.++.+-+.|+++++||+|..-....++..+.+|.- ....++|+|+++++.+|
T Consensus 206 ~d~~~~lsGh~DtIt~lsls-~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ag 284 (338)
T KOG0265|consen 206 NDGLYTLSGHADTITGLSLS-RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAG 284 (338)
T ss_pred CcceEEeecccCceeeEEec-cCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccc
Confidence 99999999999999999998 88999999999999999999966555566888877643 34678899999999999
Q ss_pred eCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCcc-CCCCCcceE
Q 015438 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL-KHPCDQSVA 386 (407)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~v~ 386 (407)
+.|..+.+||......+.. ..++...|..+.|.|...+| .++.|..|.
T Consensus 285 s~dr~vyvwd~~~r~~lyk----lpGh~gsvn~~~Fhp~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 285 SADRFVYVWDTTSRRILYK----LPGHYGSVNEVDFHPTEPIILSCSSDKTIY 333 (338)
T ss_pred cccceEEEeecccccEEEE----cCCcceeEEEeeecCCCcEEEEeccCceeE
Confidence 9999999999988766654 56778889999999987666 455676543
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=4.8e-32 Score=225.81 Aligned_cols=256 Identities=20% Similarity=0.250 Sum_probs=211.2
Q ss_pred ccccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCC
Q 015438 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (407)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (407)
.|+...+|+.-......++.||++.|.|+.|.. +.+++|+.|.+|+|||+++++++.. ..+|...|..+.|+ .
T Consensus 215 rDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~t---lihHceaVLhlrf~--n 287 (499)
T KOG0281|consen 215 RDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNT---LIHHCEAVLHLRFS--N 287 (499)
T ss_pred ccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhH---HhhhcceeEEEEEe--C
Confidence 344555666666677778899999999999964 5999999999999999999976654 45677789999995 4
Q ss_pred CeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCee
Q 015438 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (407)
Q Consensus 182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 261 (407)
.++++++.|.++.|||+.+...+...... .||...|+.+.|+ .++|++++.|.+|++|++.+++.
T Consensus 288 g~mvtcSkDrsiaVWdm~sps~it~rrVL-------------vGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~ef 352 (499)
T KOG0281|consen 288 GYMVTCSKDRSIAVWDMASPTDITLRRVL-------------VGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEF 352 (499)
T ss_pred CEEEEecCCceeEEEeccCchHHHHHHHH-------------hhhhhheeeeccc--cceEEEecCCceEEEEeccceee
Confidence 58999999999999999877654443332 2688899999995 56999999999999999999999
Q ss_pred eeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEE
Q 015438 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341 (407)
Q Consensus 262 ~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~ 341 (407)
++++.+|...|.|+.+. ++++++|+.|.+|++||+. .|.++..+.||..-|.++.| |.+.+++|+.||+|+
T Consensus 353 vRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~----~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkik 423 (499)
T KOG0281|consen 353 VRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIE----CGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIK 423 (499)
T ss_pred ehhhhcccccceehhcc---CeEEEecCCCceEEEEecc----ccHHHHHHhchHHhhhheee--cCceeeeccccceEE
Confidence 99999999999998874 7899999999999999998 89999999999999999999 678899999999999
Q ss_pred EEECCCCCCcccc-----cCCCccccccceeeeCCCCCCccCCCCCcceEEEe
Q 015438 342 LWDIRKMSSNASC-----NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 389 (407)
Q Consensus 342 iwd~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~ 389 (407)
+||+.+....... ......+...|-.+.|.. -+++++..|..|-+|+
T Consensus 424 vWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~-fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 424 VWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE-FQIISSSHDDTILIWD 475 (499)
T ss_pred EEecccccCCcccccchHHHhhhhccceeEEEeecc-eEEEeccCCCeEEEEE
Confidence 9999987655221 122233444455555543 5778888899999997
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=3.8e-30 Score=234.08 Aligned_cols=243 Identities=21% Similarity=0.321 Sum_probs=207.0
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeC-CCeEEEEECCCCc
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGT 202 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~i~vwd~~~~~ 202 (407)
...|++.+|++.-+.||+|-..|...+|.+..-..++..... ..+|..++|+..|.+||.|+. -|.+.||+..+..
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis---~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs 341 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSIS---DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES 341 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecc---cceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence 478999999999999999999999999999887666664433 337999999999999999865 4899999998776
Q ss_pred eeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCC
Q 015438 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282 (407)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~ 282 (407)
.+... .+|...+++++++|||+++++|+.||.|+|||..++-|..++..|.+.|+.++|+ ..+
T Consensus 342 YVlKQ----------------QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~-~~g 404 (893)
T KOG0291|consen 342 YVLKQ----------------QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT-ARG 404 (893)
T ss_pred eeeec----------------cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE-ecC
Confidence 53322 2678899999999999999999999999999999999999999999999999998 999
Q ss_pred CEEEEEeCCCcEEEEeCcccC----------------------------------------CCCceeeeeccccCCeEEE
Q 015438 283 HLIYSGSDDNLCKVWDRRCLN----------------------------------------VKGKPAGVLMGHLEGITFI 322 (407)
Q Consensus 283 ~~l~s~~~d~~i~vwd~~~~~----------------------------------------~~~~~~~~~~~~~~~i~~~ 322 (407)
+.+++++.||+|+.||+..+. .+|+.+..+.||.++|.++
T Consensus 405 ~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l 484 (893)
T KOG0291|consen 405 NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL 484 (893)
T ss_pred CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceee
Confidence 999999999999999986111 2577778889999999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCC-CcceEEEeC
Q 015438 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKG 390 (407)
Q Consensus 323 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~v~~~~g 390 (407)
+|+|++..|++++.|.+|++||+-......+ .-....++..++|.|+|+-|+++. |+.|..|+.
T Consensus 485 ~f~~~~~~LaS~SWDkTVRiW~if~s~~~vE----tl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 485 SFSPDGSLLASGSWDKTVRIWDIFSSSGTVE----TLEIRSDVLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred EEccccCeEEeccccceEEEEEeeccCceee----eEeeccceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 9999999999999999999999876533221 124456788999999999998764 678888873
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.3e-29 Score=204.57 Aligned_cols=244 Identities=18% Similarity=0.146 Sum_probs=201.4
Q ss_pred ccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 015438 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (407)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~ 200 (407)
++|+..|..++|+|.|++||+|+-|.++.||.-..+ .........+|...|.+++|+++|++||++++|..|-||.+..
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de 136 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE 136 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC
Confidence 479999999999999999999999999999987755 3444567889999999999999999999999999999999985
Q ss_pred CceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcC---CCeeeeeeeccCCCeEEEEe
Q 015438 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---ANKLSLRILAHTSDVNTVCF 277 (407)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~v~~i~~ 277 (407)
+.......+ ..+|+..|..+.|+|...+|++++.|.+|++|+-. ...++.++.+|...|.+++|
T Consensus 137 ddEfec~aV-------------L~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F 203 (312)
T KOG0645|consen 137 DDEFECIAV-------------LQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAF 203 (312)
T ss_pred CCcEEEEee-------------eccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEe
Confidence 543322222 12477789999999999999999999999999876 34688999999999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccc---
Q 015438 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC--- 354 (407)
Q Consensus 278 s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--- 354 (407)
+ +.|..|++++.|++++||-.. ..- -.-|...++.+.|. ...|++++.|+.|++|.-...-..+.+
T Consensus 204 ~-~~G~rl~s~sdD~tv~Iw~~~----~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~ 272 (312)
T KOG0645|consen 204 D-NIGSRLVSCSDDGTVSIWRLY----TDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLL 272 (312)
T ss_pred c-CCCceEEEecCCcceEeeeec----cCc----chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHH
Confidence 7 889999999999999999865 111 11377889999997 457999999999999987643222222
Q ss_pred cCCCccccccceeeeCCC--CCCccCCCCCcceEEEe
Q 015438 355 NLGFRSYEWDYRWMDYPP--QARDLKHPCDQSVATYK 389 (407)
Q Consensus 355 ~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~v~~~~ 389 (407)
......|..+|..+.+.| .+++++.++|+.+++|+
T Consensus 273 ~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 273 AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred HhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 123567778999999999 67888899999999986
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-30 Score=232.18 Aligned_cols=248 Identities=19% Similarity=0.239 Sum_probs=217.7
Q ss_pred cccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEE
Q 015438 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd 197 (407)
..+..++..|.++.|+|...+++++-..|.|.|||.++...+..... ..-+|.+..|-+..+++++|+.|..|+||+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV---~~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV---SEVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee---cccchhhheeeeccceEEEecCCceEEEEe
Confidence 34556899999999999999999999999999999998755554333 334799999999999999999999999999
Q ss_pred CCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC-eeeeeeeccCCCeEEEE
Q 015438 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVC 276 (407)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~ 276 (407)
.++.+....+. +|..-|.+++.+|...++++++.|.+|++||-+.. .+...+.+|...|.+++
T Consensus 84 ynt~ekV~~Fe----------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 84 YNTGEKVKTFE----------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA 147 (794)
T ss_pred cccceeeEEee----------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence 99987655443 57779999999999999999999999999998754 67888999999999999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCC--CCEEEEEeCCCcEEEEECCCCCCcccc
Q 015438 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 277 ~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (407)
|+|.+.+.+++++-|++|+||.+. ...+..++.+|..+|+++.+-+- -.+|++|+.|.+|+|||..+.+++++
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslg----s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T- 222 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLG----SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT- 222 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcC----CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH-
Confidence 999999999999999999999998 78889999999999999999764 47999999999999999999888776
Q ss_pred cCCCccccccceeeeCCCCCCccC-CCCCcceEEEeCCc
Q 015438 355 NLGFRSYEWDYRWMDYPPQARDLK-HPCDQSVATYKGHS 392 (407)
Q Consensus 355 ~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~v~~~~gh~ 392 (407)
..+|...|+.+.|.|.-.++. .+-|+++++|...+
T Consensus 223 ---LeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 223 ---LEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred ---hhcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 566788899999999976665 55689999997654
No 37
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.6e-29 Score=233.33 Aligned_cols=251 Identities=15% Similarity=0.106 Sum_probs=186.0
Q ss_pred cccccCCCceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCeEE----eEeeeccccceEEEEEEECCCC-CeEEEEeCCC
Q 015438 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSP 191 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg 191 (407)
..+.+|.+.|.+++|+| ++++|++|+.|+.|+|||+.++... .......+|...|.+++|+|++ ++|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 45789999999999999 8899999999999999999764211 1223456788899999999985 6899999999
Q ss_pred eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCC
Q 015438 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (407)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 271 (407)
.|+|||++++.....+. +|...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.+|.+.
T Consensus 149 tVrIWDl~tg~~~~~l~----------------~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIK----------------CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred EEEEEECCCCeEEEEEc----------------CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence 99999999876433221 36668999999999999999999999999999999998888888765
Q ss_pred -eEEEEecCCCCCEEEEEe----CCCcEEEEeCcccCCCCceeeeeccc-cCCeEEEEecCCCCEEEEEe-CCCcEEEEE
Q 015438 272 -VNTVCFGDESGHLIYSGS----DDNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNG-KDQAIKLWD 344 (407)
Q Consensus 272 -v~~i~~s~~~~~~l~s~~----~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~~-~dg~i~iwd 344 (407)
+..+.|. +++..+++++ .|+.|++||++.. ..++.....+ ...+....|++++++|++++ .|+.|++||
T Consensus 213 ~~~~~~w~-~~~~~ivt~G~s~s~Dr~VklWDlr~~---~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwd 288 (493)
T PTZ00421 213 KSQRCLWA-KRKDLIITLGCSKSQQRQIMLWDTRKM---ASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFE 288 (493)
T ss_pred cceEEEEc-CCCCeEEEEecCCCCCCeEEEEeCCCC---CCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEE
Confidence 3467887 4555555543 4789999999832 2344443323 34566677999999999888 499999999
Q ss_pred CCCCCCcccccCCCccccccceeeeCCCCCCccCCCCCcceEEEeCCc
Q 015438 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS 392 (407)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh~ 392 (407)
+++.+...... .....+.+.+.|.|.. .+-+..-...+.|+-+.
T Consensus 289 l~~~~~~~~~~---~~s~~~~~g~~~~pk~-~~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 289 LMNERLTFCSS---YSSVEPHKGLCMMPKW-SLDTRKCEIARFYALTY 332 (493)
T ss_pred eeCCceEEEee---ccCCCCCcceEecccc-cccccceeeeEEEEecC
Confidence 99876543321 1122334555565532 23333445556666554
No 38
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.8e-30 Score=206.06 Aligned_cols=260 Identities=17% Similarity=0.317 Sum_probs=215.3
Q ss_pred cccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC-CCCeEEEEeCCCeEEEE
Q 015438 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV 196 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~i~vw 196 (407)
..+.+|...|.+++|+.+|..|++|+.|+.+.+|+++..+ ........+|...|-.++|+| ....+++++.|..|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh-hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 4567889999999999999999999999999999998763 333445667887899999988 56789999999999999
Q ss_pred ECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEE
Q 015438 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (407)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 276 (407)
|++++++........ .=.-+.|+|+|.++++++.|..|.+.|.++.+.+... .....+..++
T Consensus 93 d~r~~k~~~~i~~~~-----------------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~ 154 (313)
T KOG1407|consen 93 DIRSGKCTARIETKG-----------------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEIS 154 (313)
T ss_pred EeccCcEEEEeeccC-----------------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeee
Confidence 999998765543222 2234889999999999999999999999998887665 3556788899
Q ss_pred ecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccC
Q 015438 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (407)
Q Consensus 277 ~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (407)
|+ .++++++.....|.|.|.... ..+++..+.+|...-.++.|+|+|++||+|+.|-.+.+||+...-++..
T Consensus 155 w~-~~nd~Fflt~GlG~v~ILsyp----sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~--- 226 (313)
T KOG1407|consen 155 WN-NSNDLFFLTNGLGCVEILSYP----SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERC--- 226 (313)
T ss_pred ec-CCCCEEEEecCCceEEEEecc----ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhee---
Confidence 98 788888888888999999987 8899999999999999999999999999999999999999998766543
Q ss_pred CCccccccceeeeCCCCCCccCCCCCcc-e---------EEEeCCccceeeEEEeeCCCC
Q 015438 357 GFRSYEWDYRWMDYPPQARDLKHPCDQS-V---------ATYKGHSVLRTLIRCHFSPVY 406 (407)
Q Consensus 357 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~-v---------~~~~gh~~~~~~~~~~fsp~~ 406 (407)
+....|+|+.+.|+.+|++|++++.+. | ++|+-+- ......|+|+|..
T Consensus 227 -isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~-~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 227 -ISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC-EGPTFTVAWHPKR 284 (313)
T ss_pred -eccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec-cCCceeEEecCCC
Confidence 677899999999999999999887533 2 2222221 2356788999863
No 39
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-30 Score=207.83 Aligned_cols=244 Identities=17% Similarity=0.231 Sum_probs=195.8
Q ss_pred CCceEEEEECCCC-CEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC-CCCeEEEEeCCCeEEEEECCCC
Q 015438 124 TSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSG 201 (407)
Q Consensus 124 ~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~i~vwd~~~~ 201 (407)
...+..++|+++. +.+++++.||+++|||+... -..+...++|..+|.++.|++ +.+.+++++.|++|++|+...+
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence 6789999999964 57888999999999995432 234456788999999999998 4667888899999999999876
Q ss_pred ceeccccccccccceeeeecCCCCccccEEEEEEeC-CCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCC
Q 015438 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (407)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~ 280 (407)
.....+. ||...|....|+| .++.+++++.|+++++||++..-....+..|...+.++.|+..
T Consensus 138 ~Sv~Tf~----------------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky 201 (311)
T KOG0277|consen 138 NSVQTFN----------------GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY 201 (311)
T ss_pred cceEeec----------------CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeeccccc
Confidence 6544432 5778999999999 5679999999999999999865444458899999999999988
Q ss_pred CCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCC-CEEEEEeCCCcEEEEECCCCCCcccccCCCc
Q 015438 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (407)
Q Consensus 281 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (407)
+.++++||+.|+.|++||+|+. ..++..+.+|.-.|..+.|||.. ..|++++.|-+++|||.............+.
T Consensus 202 ~~~vl~Tg~vd~~vr~wDir~~---r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht 278 (311)
T KOG0277|consen 202 NHNVLATGGVDNLVRGWDIRNL---RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT 278 (311)
T ss_pred CCcEEEecCCCceEEEEehhhc---cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence 9999999999999999999954 46788999999999999999964 6789999999999999986655444322233
Q ss_pred cccccceeeeCCCCCCccCCCCCcceEEEe
Q 015438 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYK 389 (407)
Q Consensus 360 ~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~ 389 (407)
.....+.+-.+ ..+.+-.++.|+.+.+|+
T Consensus 279 EFv~g~Dws~~-~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 279 EFVCGLDWSLF-DPGQVASTGWDELLYVWN 307 (311)
T ss_pred eEEeccccccc-cCceeeecccccceeeec
Confidence 33333333333 235666678899999997
No 40
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.8e-29 Score=211.80 Aligned_cols=164 Identities=22% Similarity=0.263 Sum_probs=145.7
Q ss_pred CcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEE
Q 015438 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (407)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vw 196 (407)
...|..|+.+|++++.+|+.+++++|+.|..-.||+..++... ....+|+..|+++.|+.++.+||+|..+|.|.||
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~---~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA---GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce---eEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 4568899999999999999999999999999999999998633 3467888899999999999999999999999999
Q ss_pred ECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEE
Q 015438 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (407)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 276 (407)
+..++.....+. . .-..+.=+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|..++++=.
T Consensus 134 ~~stg~~~~~~~-~---------------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~ 197 (399)
T KOG0296|consen 134 KVSTGGEQWKLD-Q---------------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGE 197 (399)
T ss_pred EcccCceEEEee-c---------------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccc
Confidence 999887654332 0 112577799999999999999999999999998877888999999999999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEeCc
Q 015438 277 FGDESGHLIYSGSDDNLCKVWDRR 300 (407)
Q Consensus 277 ~s~~~~~~l~s~~~d~~i~vwd~~ 300 (407)
|. |+|+.++++..||+|++||+.
T Consensus 198 f~-pdGKr~~tgy~dgti~~Wn~k 220 (399)
T KOG0296|consen 198 FI-PDGKRILTGYDDGTIIVWNPK 220 (399)
T ss_pred cc-CCCceEEEEecCceEEEEecC
Confidence 98 679999999999999999997
No 41
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.7e-29 Score=202.42 Aligned_cols=259 Identities=19% Similarity=0.257 Sum_probs=218.2
Q ss_pred CcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEE
Q 015438 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (407)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vw 196 (407)
|..+.+|..+++.+.++.+|.+|++++.|..+.||-..+|+.+. ...+|.+.|+++..+.+.+.+++|+.|.++++|
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 46788999999999999999999999999999999988886665 477899999999999999999999999999999
Q ss_pred ECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC-----CCeEEEEEcC-------CCeeeee
Q 015438 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYDLE-------ANKLSLR 264 (407)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~ 264 (407)
|+++++......... +|..+.|+++|++++..+. .+.|.++|++ ..+++.+
T Consensus 80 Dv~tGk~la~~k~~~-----------------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 80 DVETGKQLATWKTNS-----------------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred EcCCCcEEEEeecCC-----------------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 999999876655332 7899999999998887754 3679999998 4567788
Q ss_pred eeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCC-ceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 015438 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (407)
Q Consensus 265 ~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw 343 (407)
+..+.+.++.+-|. +.++.|++|..||.|.+||++ ++ +.+.+...|...|+.+.+++|..+++|++.|.+-++|
T Consensus 143 I~t~~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~----~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 143 IPTPDSKITSALWG-PLGETIIAGHEDGSISIYDAR----TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLV 217 (327)
T ss_pred ecCCccceeeeeec-ccCCEEEEecCCCcEEEEEcc----cCceeeechhhhccccccccccCCcceEEecccCccceee
Confidence 88889999999997 889999999999999999998 65 5566667899999999999999999999999999999
Q ss_pred ECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCC--------------------------cceEEEeCCccceee
Q 015438 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD--------------------------QSVATYKGHSVLRTL 397 (407)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------------------------~~v~~~~gh~~~~~~ 397 (407)
|+++.+.+.++ ....++.+.+++|....+..+.+ +-+..++||=- ++
T Consensus 218 D~~tl~v~Kty-----~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG--PI 290 (327)
T KOG0643|consen 218 DVRTLEVLKTY-----TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG--PI 290 (327)
T ss_pred eccceeeEEEe-----eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc--Cc
Confidence 99998887665 34567777888886544333221 23556677753 68
Q ss_pred EEEeeCCCCC
Q 015438 398 IRCHFSPVYR 407 (407)
Q Consensus 398 ~~~~fsp~~~ 407 (407)
..++|||+++
T Consensus 291 NsvAfhPdGk 300 (327)
T KOG0643|consen 291 NSVAFHPDGK 300 (327)
T ss_pred ceeEECCCCc
Confidence 8899999975
No 42
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=1e-29 Score=207.56 Aligned_cols=272 Identities=17% Similarity=0.229 Sum_probs=208.5
Q ss_pred CcccccCCCceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCe------------EEeEeeeccccceEEEEEEECC-CCC
Q 015438 117 PWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW------------KIQKDILAKSLRWTVTDTSLSP-DQR 182 (407)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~~v~~~~~sp-~~~ 182 (407)
......|.+.|+++...+ .|+++++|+.||.|.+||+++.. ++........|...|.++.|-| |.-
T Consensus 36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 445677999999999998 68999999999999999997642 1112223456888999999999 566
Q ss_pred eEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCC---CCEEEEeeCCCeEEEEEcCCC
Q 015438 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEAN 259 (407)
Q Consensus 183 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~i~d~~~~ 259 (407)
.+.+++.|.+++|||.++.+....+++.. .|.+-+++|- ..+||+|..+-.|++.|+.+|
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~me~-----------------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG 178 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFKMEG-----------------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG 178 (397)
T ss_pred eeecccccceEEEeecccceeeEEeecCc-----------------eeehhhcChhhhcceEEEEecCCCcEEEEeccCC
Confidence 78888999999999999988766665443 5778888883 458899999999999999999
Q ss_pred eeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccC-----------CCCceeeeeccccCCeEEEEecCCC
Q 015438 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-----------VKGKPAGVLMGHLEGITFIDSRGDG 328 (407)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~-----------~~~~~~~~~~~~~~~i~~~~~s~~~ 328 (407)
.....+.+|.+.|.++.|+|...-.|++|+.||.|++||+|... .....++.-..|.+.|..++|+.++
T Consensus 179 s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~ 258 (397)
T KOG4283|consen 179 SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA 258 (397)
T ss_pred cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc
Confidence 99999999999999999998888899999999999999998320 0011112234678889999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCCccccc-----CCCcccccccee------eeCCCCC--CccCCCCCcceEEEeCCccce
Q 015438 329 RYLISNGKDQAIKLWDIRKMSSNASCN-----LGFRSYEWDYRW------MDYPPQA--RDLKHPCDQSVATYKGHSVLR 395 (407)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~v~~------~~~~~~~--~~l~~~~~~~v~~~~gh~~~~ 395 (407)
.++++++.|..+++|+..+++....-. .........+++ +-|+.++ .++.......|+.|++| .+
T Consensus 259 ~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--~k 336 (397)
T KOG4283|consen 259 RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--LK 336 (397)
T ss_pred hhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecc--cc
Confidence 999999999999999998876533211 111111111221 2233333 45567788899999999 67
Q ss_pred eeEEEeeCCCCC
Q 015438 396 TLIRCHFSPVYR 407 (407)
Q Consensus 396 ~~~~~~fsp~~~ 407 (407)
++..+.|-|+++
T Consensus 337 ~i~c~~~~~~fq 348 (397)
T KOG4283|consen 337 RINCAAYRPDFE 348 (397)
T ss_pred eeeEEeecCchh
Confidence 888888888864
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.2e-28 Score=218.10 Aligned_cols=259 Identities=25% Similarity=0.372 Sum_probs=214.3
Q ss_pred cccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCC
Q 015438 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (407)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 182 (407)
+....++..........+..|...+..+.|+|+++++++++.+|.|++|++.++..... ...|...+.++.|+|+++
T Consensus 30 ~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~ 106 (289)
T cd00200 30 DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT---LTGHTSYVSSVAFSPDGR 106 (289)
T ss_pred CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE---EeccCCcEEEEEEcCCCC
Confidence 44455666665556677788999999999999999999999999999999987644433 335666799999999988
Q ss_pred eEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeee
Q 015438 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (407)
Q Consensus 183 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 262 (407)
++++++.++.|.+||+.+++...... .|...|.+++|+|++.++++++.++.|++||+++++.+
T Consensus 107 ~~~~~~~~~~i~~~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 170 (289)
T cd00200 107 ILSSSSRDKTIKVWDVETGKCLTTLR----------------GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170 (289)
T ss_pred EEEEecCCCeEEEEECCCcEEEEEec----------------cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc
Confidence 88888889999999998665433222 24557999999999999998888999999999999988
Q ss_pred eeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEE
Q 015438 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 342 (407)
Q Consensus 263 ~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~i 342 (407)
..+..|...+.+++|+ ++++.+++++.|+.|++||++ .++.+..+..|...+.+++|+|++.++++++.||.|++
T Consensus 171 ~~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i 245 (289)
T cd00200 171 ATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLS----TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245 (289)
T ss_pred eeEecCccccceEEEC-CCcCEEEEecCCCcEEEEECC----CCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEE
Confidence 8888899999999998 777788888889999999998 67888888789999999999999999998888999999
Q ss_pred EECCCCCCcccccCCCccccccceeeeCCCCCCccC-CCCCcceEEEe
Q 015438 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK-HPCDQSVATYK 389 (407)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~v~~~~ 389 (407)
||+.+.+....+. .+...+..+.|++++.++. .+.|+.+++|+
T Consensus 246 ~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 246 WDLRTGECVQTLS----GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCceeEEEcc----ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999876655542 4455788999999965554 56678888874
No 44
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=9.2e-30 Score=231.15 Aligned_cols=266 Identities=18% Similarity=0.203 Sum_probs=215.7
Q ss_pred eccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCe-EEeEeeeccccceEEEEEEECCC-CCeEEEEe
Q 015438 111 YLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPD-QRHLVYAS 188 (407)
Q Consensus 111 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~ 188 (407)
..++....++.+|+..|.++....+|.+|++|+.|.++++|.++++. .........+|...|.+++++.. ..+|++++
T Consensus 352 ~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS 431 (775)
T KOG0319|consen 352 TLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS 431 (775)
T ss_pred ecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEec
Confidence 34555556889999999999977788999999999999999885432 22223346788889999999775 45788999
Q ss_pred CCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeecc
Q 015438 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (407)
Q Consensus 189 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 268 (407)
.|+++++|++...+......... .......|...|++++.+|+.++|++||.|.+.+||+++.......+.+|
T Consensus 432 ~D~tlK~W~l~~s~~~~~~~~~~-------~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH 504 (775)
T KOG0319|consen 432 QDCTLKLWDLPKSKETAFPIVLT-------CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH 504 (775)
T ss_pred CCceEEEecCCCcccccccceeh-------hhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC
Confidence 99999999998632211110000 00011246678999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 015438 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (407)
Q Consensus 269 ~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 348 (407)
...|.++.|+ +..++++|+|.|++|+||.+. +..++.++.||...|..+.|-.+|..|++++.||-|++|++++.
T Consensus 505 ~RGvw~V~Fs-~~dq~laT~SgD~TvKIW~is----~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 505 TRGVWCVSFS-KNDQLLATCSGDKTVKIWSIS----TFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred ccceEEEEec-cccceeEeccCCceEEEEEec----cceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 9999999998 788899999999999999998 89999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCccccccceeeeCCCCCCcc-CCCCCcceEEEeCCc
Q 015438 349 SSNASCNLGFRSYEWDYRWMDYPPQARDL-KHPCDQSVATYKGHS 392 (407)
Q Consensus 349 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~v~~~~gh~ 392 (407)
.+..++ ..|.-.+-.+..++...++ ..+.|+.+..|+--+
T Consensus 580 eC~~tl----D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 580 ECEMTL----DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred hhhhhh----hhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 888764 4455555566677776544 456788888887543
No 45
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=208.80 Aligned_cols=255 Identities=21% Similarity=0.287 Sum_probs=198.4
Q ss_pred CCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCC------------Ce---EEeEeeeccccceEEEEEEECCC
Q 015438 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER------------GW---KIQKDILAKSLRWTVTDTSLSPD 180 (407)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~------------~~---~~~~~~~~~~~~~~v~~~~~sp~ 180 (407)
....+..|.+++.+.+|+|||.++|+|+.|-.|+|.|++. +. .-..+..+..|..+|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 3446778999999999999999999999999999999862 11 11223355678889999999999
Q ss_pred CCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCe
Q 015438 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (407)
Q Consensus 181 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 260 (407)
...|++|+.|++|+++|.........++... ...+|.++.|+|.|.+|++|....++++||+.+.+
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~q--------------d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ--------------DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhh--------------ccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence 9999999999999999998655433333221 22379999999999999999999999999999998
Q ss_pred eeeee---eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeec-cccC-CeEEEEecCCCCEEEEEe
Q 015438 261 LSLRI---LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLE-GITFIDSRGDGRYLISNG 335 (407)
Q Consensus 261 ~~~~~---~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~-~i~~~~~s~~~~~l~s~~ 335 (407)
+...- ..|.+.|+++.++ +.+++.++++.||.|++||-- ..+++.++. .|.+ .|.+..|..+|+|++++|
T Consensus 250 cfvsanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGV----S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG 324 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGV----SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG 324 (430)
T ss_pred EeeecCcccccccceeEEEec-CCccEEEEeccCCcEEeeccc----cHHHHHHHHhhcCCceeeeEEEccCCeEEeecC
Confidence 76543 3688999999998 899999999999999999986 788888775 4543 689999999999999999
Q ss_pred CCCcEEEEECCCCCCcccccCC-CccccccceeeeCCCCCCccCCCCC--cceEEEe
Q 015438 336 KDQAIKLWDIRKMSSNASCNLG-FRSYEWDYRWMDYPPQARDLKHPCD--QSVATYK 389 (407)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~--~~v~~~~ 389 (407)
+|..+++|.+.++..+.+.... ..+...--+...|+.+..++..++. ..+..|+
T Consensus 325 ~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWd 381 (430)
T KOG0640|consen 325 KDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWD 381 (430)
T ss_pred CcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecc
Confidence 9999999999999888776421 1111111122345555555555443 3445554
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.1e-29 Score=227.25 Aligned_cols=258 Identities=19% Similarity=0.249 Sum_probs=210.4
Q ss_pred cccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeee---------------------------------
Q 015438 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL--------------------------------- 164 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------------------- 164 (407)
..+.+|...|.++++|.+...+++|+ .+.|+||+..+.+++.....
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 35578999999999999887777774 47899999887654433211
Q ss_pred ----ccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCce--eccccccccccceeeeecCCCCccccEEEEEEeCC
Q 015438 165 ----AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM--ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238 (407)
Q Consensus 165 ----~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 238 (407)
...|.+.|++++.+||++.+++|+.|.+|++||..--.. ....+.........+ .-...|.|+++|||
T Consensus 446 l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL------el~ddvL~v~~Spd 519 (888)
T KOG0306|consen 446 LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL------ELEDDVLCVSVSPD 519 (888)
T ss_pred hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE------eccccEEEEEEcCC
Confidence 146788899999999999999999999999999752111 000000011110011 12337999999999
Q ss_pred CCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCC
Q 015438 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 318 (407)
Q Consensus 239 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 318 (407)
|++|+++--|.+|++|-+.+.+....+.+|.-||.|+..+ +++++++|||.|..|++|-+. -|.+..++.+|...
T Consensus 520 gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS-~DSklivTgSADKnVKiWGLd----FGDCHKS~fAHdDS 594 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS-PDSKLIVTGSADKNVKIWGLD----FGDCHKSFFAHDDS 594 (888)
T ss_pred CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEecc-CCcCeEEeccCCCceEEeccc----cchhhhhhhcccCc
Confidence 9999999999999999999999999999999999999998 899999999999999999998 89999999999999
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccC-CCCCcceEEEeCC
Q 015438 319 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK-HPCDQSVATYKGH 391 (407)
Q Consensus 319 i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~v~~~~gh 391 (407)
|.++.|-|+...++++|.|+.|+-||-.+++..+. ...|...+.+++.+|+|+++. ++.|.+|+.|.--
T Consensus 595 vm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~----L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 595 VMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK----LDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred eeEEEEcccceeEEEecCcceEEeechhhhhhhee----eccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 99999999999999999999999999999888765 566778899999999996665 5578999999643
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-29 Score=214.56 Aligned_cols=291 Identities=16% Similarity=0.241 Sum_probs=232.5
Q ss_pred CCCCcccchhhhccCccCc-----cCCCceec---cccccceeeeeccCCC---CcccccCCCceEEEEECCCCCEEEEE
Q 015438 74 GKRHLPVSTVKMLAGREGN-----YSGRGRFS---AADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSADGSLFVAG 142 (407)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~s~~~~~l~~~ 142 (407)
.+...|..+...+..|... ++.+|++. ..+.+.++|...+... ..++.+|..+|..+.||||.++|+++
T Consensus 208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence 3455666777777777654 47888883 3556667777766655 66789999999999999999999999
Q ss_pred eCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecC
Q 015438 143 FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (407)
Q Consensus 143 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (407)
+.+..+.+||+.+|...... ..++...+.+++|.|||..+++|+.|+.+..||+.......-...
T Consensus 288 g~~e~~~lwDv~tgd~~~~y--~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv------------- 352 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLY--PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV------------- 352 (519)
T ss_pred CchHheeeccCCcchhhhhc--ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc-------------
Confidence 99999999999999655442 233566799999999999999999999999999986643221111
Q ss_pred CCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCccc
Q 015438 223 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 302 (407)
Q Consensus 223 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~ 302 (407)
....|.+++..+||+++++...|..|++++.++......+ ....+|++++.| .+++++++.=.+..+++||+.
T Consensus 353 ---r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS-~d~k~~LvnL~~qei~LWDl~-- 425 (519)
T KOG0293|consen 353 ---RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSIS-KDGKLALVNLQDQEIHLWDLE-- 425 (519)
T ss_pred ---ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEc-CCCcEEEEEcccCeeEEeecc--
Confidence 1126899999999999999999999999999877665444 456789999998 999999999999999999998
Q ss_pred CCCCceeeeeccccCC--eEEEEecC-CCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCC-CccC
Q 015438 303 NVKGKPAGVLMGHLEG--ITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-RDLK 378 (407)
Q Consensus 303 ~~~~~~~~~~~~~~~~--i~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 378 (407)
..+.+..+.||... |-.-+|-. +..++++|++|+.|+||+..+++.+.+ ..+|.-.+.+++++|.. ++++
T Consensus 426 --e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~----LsGHs~~vNcVswNP~~p~m~A 499 (519)
T KOG0293|consen 426 --ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV----LSGHSKTVNCVSWNPADPEMFA 499 (519)
T ss_pred --hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe----ecCCcceeeEEecCCCCHHHhh
Confidence 77888899999765 33344543 558999999999999999999998876 45677889999999875 5665
Q ss_pred C-CCCcceEEEeCCc
Q 015438 379 H-PCDQSVATYKGHS 392 (407)
Q Consensus 379 ~-~~~~~v~~~~gh~ 392 (407)
+ ++|++|++|.-..
T Consensus 500 SasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 500 SASDDGTIRIWGPSD 514 (519)
T ss_pred ccCCCCeEEEecCCc
Confidence 5 4689999997654
No 48
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.9e-29 Score=211.49 Aligned_cols=273 Identities=19% Similarity=0.244 Sum_probs=216.0
Q ss_pred ccCCCCcccccCCCceEEEEECCCCC---EEEEEeCCCeEEEEEcCCCeEEe-EeeeccccceEEEEEEECCCCCeEEEE
Q 015438 112 LPVNGPWPVDQTTSRAYVSQFSADGS---LFVAGFQASQIRIYDVERGWKIQ-KDILAKSLRWTVTDTSLSPDQRHLVYA 187 (407)
Q Consensus 112 ~~~~~~~~~~~h~~~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~ 187 (407)
..++....+.+|.++|.+++|..... .|++++.|.++++|..+.+.... ......+|...|-++...+++..+++|
T Consensus 132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg 211 (423)
T KOG0313|consen 132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG 211 (423)
T ss_pred cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEee
Confidence 45666778899999999998865444 59999999999999988764332 222345899999999999999999999
Q ss_pred eCCCeEEEEECCCCceeccccc---------cccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCC
Q 015438 188 SMSPIVHIVDVGSGTMESLANV---------TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (407)
Q Consensus 188 ~~dg~i~vwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 258 (407)
+.|..|.||+..+......... .....+.........||+.+|.++.|++ ...+++++.|.+|+.||+.+
T Consensus 212 S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet 290 (423)
T KOG0313|consen 212 SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET 290 (423)
T ss_pred cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec
Confidence 9999999999443221111000 0001111222233568999999999998 66899999999999999999
Q ss_pred CeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCC-CEEEEEeCC
Q 015438 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKD 337 (407)
Q Consensus 259 ~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~~d 337 (407)
+..+..+.. ...+.++..+ +..++|++|+.|..|++||.|... .....+++.+|...|.++.|+|.. ..|++++.|
T Consensus 291 g~~~~~~~~-~ksl~~i~~~-~~~~Ll~~gssdr~irl~DPR~~~-gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D 367 (423)
T KOG0313|consen 291 GGLKSTLTT-NKSLNCISYS-PLSKLLASGSSDRHIRLWDPRTGD-GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD 367 (423)
T ss_pred ccceeeeec-CcceeEeecc-cccceeeecCCCCceeecCCCCCC-CceeEEeeecchhhhhheecCCCCceEEEEEecC
Confidence 999888754 6689999998 688999999999999999999663 445667899999999999999955 568899999
Q ss_pred CcEEEEECCCCC-CcccccCCCccccccceeeeCCCCCCccCCCCCcceEEEeCCc
Q 015438 338 QAIKLWDIRKMS-SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS 392 (407)
Q Consensus 338 g~i~iwd~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh~ 392 (407)
+++++||+|+.+ ++.. +..+.-.+-++.+...+.++..+.|..+++|++..
T Consensus 368 ~t~klWDvRS~k~plyd----I~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 368 NTVKLWDVRSTKAPLYD----IAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred CeEEEEEeccCCCccee----eccCCceEEEEeccCCceEEeccCcceEEEecccc
Confidence 999999999988 4444 34446667788888888999999999999999865
No 49
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=4e-28 Score=212.64 Aligned_cols=283 Identities=18% Similarity=0.220 Sum_probs=223.2
Q ss_pred eeccccccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEE
Q 015438 98 RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (407)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (407)
-+...+++.++..+-......++.+|..+++...|||.|-|+|+|...|.|+|||......+.+. ......++|.+++|
T Consensus 33 ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKn-ef~v~aG~I~Di~W 111 (603)
T KOG0318|consen 33 ILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKN-EFQVLAGPIKDISW 111 (603)
T ss_pred EEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeee-eeeeccccccccee
Confidence 34556677777787777788899999999999999999999999999999999998764333322 23345568999999
Q ss_pred CCCCCeEEEEeCC----CeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCC-EEEEeeCCCeEE
Q 015438 178 SPDQRHLVYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIY 252 (407)
Q Consensus 178 sp~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~ 252 (407)
+++++.|++.++. |.+.+||..+. ... ..||...|+++.|-|... .+++|+.|++|.
T Consensus 112 d~ds~RI~avGEGrerfg~~F~~DSG~S--vGe----------------i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ 173 (603)
T KOG0318|consen 112 DFDSKRIAAVGEGRERFGHVFLWDSGNS--VGE----------------ITGHSRRINSVDFKPSRPFRIATGSDDNTVA 173 (603)
T ss_pred CCCCcEEEEEecCccceeEEEEecCCCc--cce----------------eeccceeEeeeeccCCCceEEEeccCCCeEE
Confidence 9999999987643 35666765432 111 226888999999999775 799999999999
Q ss_pred EEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeec---cccCCeEEEEecCCCC
Q 015438 253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---GHLEGITFIDSRGDGR 329 (407)
Q Consensus 253 i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~ 329 (407)
+|+=.-.+....+..|..-|.++.|+ |+|.++++.+.||+|.+||-. ++..+..+. +|.+.|.+++|+||+.
T Consensus 174 ffeGPPFKFk~s~r~HskFV~~VRys-PDG~~Fat~gsDgki~iyDGk----tge~vg~l~~~~aHkGsIfalsWsPDs~ 248 (603)
T KOG0318|consen 174 FFEGPPFKFKSSFREHSKFVNCVRYS-PDGSRFATAGSDGKIYIYDGK----TGEKVGELEDSDAHKGSIFALSWSPDST 248 (603)
T ss_pred EeeCCCeeeeecccccccceeeEEEC-CCCCeEEEecCCccEEEEcCC----CccEEEEecCCCCccccEEEEEECCCCc
Confidence 99977777778888999999999998 789999999999999999998 889998888 8999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeee-------CCCCC--CccCCCCCcceEEEeCCccceeeEEE
Q 015438 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD-------YPPQA--RDLKHPCDQSVATYKGHSVLRTLIRC 400 (407)
Q Consensus 330 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~--~~l~~~~~~~v~~~~gh~~~~~~~~~ 400 (407)
.|+|++.|.+++|||+.+.+...++..+.......+-++. .+..| .++...+...+++..||. +.+..+
T Consensus 249 ~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaL 326 (603)
T KOG0318|consen 249 QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITAL 326 (603)
T ss_pred eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccc--cceeEE
Confidence 9999999999999999999888777544332222222222 22222 444455566788888997 366666
Q ss_pred eeCCCC
Q 015438 401 HFSPVY 406 (407)
Q Consensus 401 ~fsp~~ 406 (407)
.-+||.
T Consensus 327 tv~~d~ 332 (603)
T KOG0318|consen 327 TVSPDG 332 (603)
T ss_pred EEcCCC
Confidence 777764
No 50
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5e-29 Score=212.12 Aligned_cols=274 Identities=20% Similarity=0.265 Sum_probs=214.4
Q ss_pred eeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEE
Q 015438 107 MLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (407)
Q Consensus 107 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 186 (407)
+....+|.+..+++..|+.+|+-+.||++|++||+++.|.+..||.+.....+.......+|..+|..+.||||.++|++
T Consensus 207 c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLla 286 (519)
T KOG0293|consen 207 CGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLA 286 (519)
T ss_pred cCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEe
Confidence 34466788889999999999999999999999999999999999998766555555677889999999999999999999
Q ss_pred EeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeee
Q 015438 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (407)
Q Consensus 187 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 266 (407)
++.+..+.+||+.++........ ++...+.+++|.|||..+++|+.|+.+..||+.. ..+...+
T Consensus 287 Cg~~e~~~lwDv~tgd~~~~y~~---------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~ 350 (519)
T KOG0293|consen 287 CGFDEVLSLWDVDTGDLRHLYPS---------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWE 350 (519)
T ss_pred cCchHheeeccCCcchhhhhccc---------------CcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhccc
Confidence 99999999999999986544321 2445899999999999999999999999999974 4444444
Q ss_pred cc-CCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 015438 267 AH-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (407)
Q Consensus 267 ~~-~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~ 345 (407)
+- ...|.+++.+ ++|+++++.+.|..|++++.. ........ ....+|++++.|.|++++++.=.+..+++||+
T Consensus 351 gvr~~~v~dlait-~Dgk~vl~v~~d~~i~l~~~e----~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl 424 (519)
T KOG0293|consen 351 GVRDPKVHDLAIT-YDGKYVLLVTVDKKIRLYNRE----ARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDL 424 (519)
T ss_pred ccccceeEEEEEc-CCCcEEEEEecccceeeechh----hhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeec
Confidence 33 3568999998 899999999999999999986 33333222 34568999999999999999999999999999
Q ss_pred CCCCCcccccCCCccccccceeeeCCCCCCccCCCC-Ccc-----------eEEEeCCccceeeEEEeeCCC
Q 015438 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQS-----------VATYKGHSVLRTLIRCHFSPV 405 (407)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~-----------v~~~~gh~~~~~~~~~~fsp~ 405 (407)
...+.+..+.. ++....-|++.---.+..++++++ |+. +.++.||+ ++|..|+|+|.
T Consensus 425 ~e~~lv~kY~G-hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs--~~vNcVswNP~ 493 (519)
T KOG0293|consen 425 EENKLVRKYFG-HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS--KTVNCVSWNPA 493 (519)
T ss_pred chhhHHHHhhc-ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc--ceeeEEecCCC
Confidence 97666555432 333333343322223334554443 444 55556888 58999999996
No 51
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-29 Score=200.05 Aligned_cols=240 Identities=20% Similarity=0.248 Sum_probs=186.3
Q ss_pred eEEEEECCC-CCEEEEEe-------CCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC-CCeEEEEeCCCeEEEEE
Q 015438 127 AYVSQFSAD-GSLFVAGF-------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVD 197 (407)
Q Consensus 127 v~~~~~s~~-~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~i~vwd 197 (407)
=+++.|||- .++||++. ..|.+.|.++..+..+...... .-...+.+++|+++ .+.+++++.||.+++||
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEec
Confidence 357889992 23333321 3688999998654444433322 23345999999996 56777889999999999
Q ss_pred CCCCceeccccccccccceeeeecCCCCccccEEEEEEeCC-CCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEE
Q 015438 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (407)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 276 (407)
+.-... .+... .+|..+|.++.|++. +..+++++.|++|++|+..-++.+.++.+|...|...+
T Consensus 90 ~~~~s~-Pi~~~--------------kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~ 154 (311)
T KOG0277|consen 90 LTMPSK-PIHKF--------------KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA 154 (311)
T ss_pred cCCCCc-chhHH--------------HhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe
Confidence 543221 12111 247779999999994 55788889999999999999999999999999999999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecC-CCCEEEEEeCCCcEEEEECCCCCCccccc
Q 015438 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (407)
Q Consensus 277 ~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (407)
|+|..++++++++.|+++++||+|. .++.+. +..|...|.++.|+. +.+.|+||+.|+.|++||+++.+.+...
T Consensus 155 ~sp~~~nlfas~Sgd~~l~lwdvr~---~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e- 229 (311)
T KOG0277|consen 155 FSPHIPNLFASASGDGTLRLWDVRS---PGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE- 229 (311)
T ss_pred cCCCCCCeEEEccCCceEEEEEecC---CCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccccee-
Confidence 9999999999999999999999983 455554 888999999999987 6788999999999999999998866443
Q ss_pred CCCccccccceeeeCCCCC-CccC-CCCCcceEEEe
Q 015438 356 LGFRSYEWDYRWMDYPPQA-RDLK-HPCDQSVATYK 389 (407)
Q Consensus 356 ~~~~~~~~~v~~~~~~~~~-~~l~-~~~~~~v~~~~ 389 (407)
...+...|+.+.|||.. .+|+ ++.|-++++|+
T Consensus 230 --L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 230 --LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWD 263 (311)
T ss_pred --ecCCceEEEEEecCcchhhHhhhccccceEEecc
Confidence 57889999999999986 4444 34566667765
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.2e-29 Score=223.65 Aligned_cols=237 Identities=18% Similarity=0.261 Sum_probs=200.7
Q ss_pred ceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEE
Q 015438 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (407)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 185 (407)
..+|++........++--.-+|.+..|-+..+++++|+.|..|+||+..+++++.. +..|...|.+++.+|...+++
T Consensus 37 V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~---FeAH~DyIR~iavHPt~P~vL 113 (794)
T KOG0276|consen 37 VQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT---FEAHSDYIRSIAVHPTLPYVL 113 (794)
T ss_pred eEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEE---eeccccceeeeeecCCCCeEE
Confidence 34555555444555566678999999999999999999999999999999876654 667888999999999999999
Q ss_pred EEeCCCeEEEEECCCCc-eeccccccccccceeeeecCCCCccccEEEEEEeC-CCCEEEEeeCCCeEEEEEcCCCeeee
Q 015438 186 YASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSL 263 (407)
Q Consensus 186 ~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 263 (407)
+++.|-.|++||.+..- +.+. ..||..-|.+++|+| |.+.+++++-|++|++|.+.+..+..
T Consensus 114 tsSDDm~iKlW~we~~wa~~qt----------------feGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf 177 (794)
T KOG0276|consen 114 TSSDDMTIKLWDWENEWACEQT----------------FEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF 177 (794)
T ss_pred ecCCccEEEEeeccCceeeeeE----------------EcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce
Confidence 99999999999997542 2222 236888999999999 55799999999999999999999999
Q ss_pred eeeccCCCeEEEEecCC-CCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEE
Q 015438 264 RILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 342 (407)
Q Consensus 264 ~~~~~~~~v~~i~~s~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~i 342 (407)
++.+|...|+|+.+-+. +..+|++|+.|.+|+|||.. +..+++++.||...|..+.|+|.-..+++|++||+|+|
T Consensus 178 Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ----tk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvri 253 (794)
T KOG0276|consen 178 TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ----TKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRI 253 (794)
T ss_pred eeeccccCcceEEeccCCCcceEEecCCCceEEEeecc----hHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEE
Confidence 99999999999999632 23599999999999999998 88999999999999999999999999999999999999
Q ss_pred EECCCCCCcccccCCCccccccce
Q 015438 343 WDIRKMSSNASCNLGFRSYEWDYR 366 (407)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~v~ 366 (407)
|+-.+.+...+... .....|.|.
T Consensus 254 Whs~Ty~lE~tLn~-gleRvW~I~ 276 (794)
T KOG0276|consen 254 WNSKTYKLEKTLNY-GLERVWCIA 276 (794)
T ss_pred ecCcceehhhhhhc-CCceEEEEe
Confidence 99999887766543 223345443
No 53
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-28 Score=194.92 Aligned_cols=262 Identities=17% Similarity=0.190 Sum_probs=215.0
Q ss_pred ccccccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC
Q 015438 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (407)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (407)
-..++...+|+...+.......+|..+|..++.+.|...|++|+.|..|.+||+.+|+...+ ..+|.+.|+.+.|+.
T Consensus 35 cGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr---~rgH~aqVNtV~fNe 111 (307)
T KOG0316|consen 35 CGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRR---FRGHLAQVNTVRFNE 111 (307)
T ss_pred cCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeee---cccccceeeEEEecC
Confidence 34567777888888888889999999999999999999999999999999999999966654 678889999999999
Q ss_pred CCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC
Q 015438 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (407)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 259 (407)
+...+++|+.|..+++||.++....++..+.+.. ..|.++..+ +..|++|+.||+++.||++.+
T Consensus 112 esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~--------------D~V~Si~v~--~heIvaGS~DGtvRtydiR~G 175 (307)
T KOG0316|consen 112 ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK--------------DGVSSIDVA--EHEIVAGSVDGTVRTYDIRKG 175 (307)
T ss_pred cceEEEeccccceeEEEEcccCCCCccchhhhhc--------------CceeEEEec--ccEEEeeccCCcEEEEEeecc
Confidence 9999999999999999999988766555444332 368888775 668999999999999999999
Q ss_pred eeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCe--EEEEecCCCCEEEEEeCC
Q 015438 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI--TFIDSRGDGRYLISNGKD 337 (407)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i--~~~~~s~~~~~l~s~~~d 337 (407)
+...-.. ..+|++++|+ ++++..+.++.|+++++.|-. +++.+..+.+|...- ..++++.....+++|++|
T Consensus 176 ~l~sDy~--g~pit~vs~s-~d~nc~La~~l~stlrLlDk~----tGklL~sYkGhkn~eykldc~l~qsdthV~sgSED 248 (307)
T KOG0316|consen 176 TLSSDYF--GHPITSVSFS-KDGNCSLASSLDSTLRLLDKE----TGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSED 248 (307)
T ss_pred eeehhhc--CCcceeEEec-CCCCEEEEeeccceeeecccc----hhHHHHHhcccccceeeeeeeecccceeEEeccCC
Confidence 8766554 4589999998 899999999999999999998 999999999997754 455677888899999999
Q ss_pred CcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCCcceEEEeC
Q 015438 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390 (407)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~g 390 (407)
|.|.+||+.....+..+.. .....++.+++.|...-+..+.+..+..|.+
T Consensus 249 G~Vy~wdLvd~~~~sk~~~---~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~ 298 (307)
T KOG0316|consen 249 GKVYFWDLVDETQISKLSV---VSTVIVTDLSCHPTMDDFITATGHGDLFWYQ 298 (307)
T ss_pred ceEEEEEeccceeeeeecc---CCceeEEeeecccCccceeEecCCceeceee
Confidence 9999999998877665422 2222367788888765554555544444433
No 54
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=7.4e-28 Score=225.53 Aligned_cols=251 Identities=14% Similarity=0.141 Sum_probs=181.6
Q ss_pred CCcccccCCCceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCeE-Ee----EeeeccccceEEEEEEECCCCCeE-EEEe
Q 015438 116 GPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWK-IQ----KDILAKSLRWTVTDTSLSPDQRHL-VYAS 188 (407)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~-~~----~~~~~~~~~~~v~~~~~sp~~~~l-~~~~ 188 (407)
....+.+|.+.|.+++|+|+ +.+||+|+.|+.|+|||+.++.. .. ......+|...|.+++|+|++..+ ++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 34567899999999999997 78999999999999999976421 11 112345688889999999998764 6889
Q ss_pred CCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeecc
Q 015438 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (407)
Q Consensus 189 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 268 (407)
.|+.|+|||+++++...... +...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.+|
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~-----------------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQIN-----------------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred CCCeEEEEECCCCcEEEEEe-----------------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 99999999999876432221 2236999999999999999999999999999999999999999
Q ss_pred CCCeEEEE-----ecCCCCCEEEEEeCCC----cEEEEeCcccCCCCceeeeec--cccCCeEEEEecCCCCEEEEEeCC
Q 015438 269 TSDVNTVC-----FGDESGHLIYSGSDDN----LCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISNGKD 337 (407)
Q Consensus 269 ~~~v~~i~-----~s~~~~~~l~s~~~d~----~i~vwd~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~s~~~d 337 (407)
.+.+.+.. |+ +++.+|++++.|+ .|+|||++. ...++..+. .+.+.+...-..++|.++++|+.|
T Consensus 209 ~g~~~s~~v~~~~fs-~d~~~IlTtG~d~~~~R~VkLWDlr~---~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 209 DGGKNTKNIWIDGLG-GDDNYILSTGFSKNNMREMKLWDLKN---TTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred cCCceeEEEEeeeEc-CCCCEEEEEEcCCCCccEEEEEECCC---CCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 88764433 33 5677888887764 799999983 244555443 222333333335568899999999
Q ss_pred CcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCCcceEEEeCC
Q 015438 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (407)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh 391 (407)
++|++|++..... ..+ .......+++.+.|.|... +-+..-...+.|+-+
T Consensus 285 ~tIr~~e~~~~~~-~~l--~~~~s~~p~~g~~f~Pkr~-~dv~~cEi~R~~kl~ 334 (568)
T PTZ00420 285 GNCRYYQHSLGSI-RKV--NEYKSCSPFRSFGFLPKQI-CDVYKCEIGRVYKNE 334 (568)
T ss_pred CeEEEEEccCCcE-Eee--cccccCCCccceEEccccc-cCchhhhHhHHhhhc
Confidence 9999999987532 111 1222445566777877543 333333445556554
No 55
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=3e-29 Score=217.62 Aligned_cols=247 Identities=19% Similarity=0.235 Sum_probs=205.2
Q ss_pred CCCCCcccchhhhccCccCccCCCcee---------ccccccceeeeecc-CCCCcccccCCCceEEEEECCCCCEEEEE
Q 015438 73 PGKRHLPVSTVKMLAGREGNYSGRGRF---------SAADCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAG 142 (407)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~~~ 142 (407)
+.+..+|...+..+.+|..+++....| ...|....+|+... .....++.+|+.+|..++|+++|..|+++
T Consensus 197 ~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 197 EERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSA 276 (503)
T ss_pred cceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeee
Confidence 344556778888999999888765544 23556667887776 78888999999999999999999999999
Q ss_pred eCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCC-CeEEEEeCCCeEEEEECCCCceeccccccccccceeeeec
Q 015438 143 FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (407)
Q Consensus 143 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (407)
+.|+.|++||+++|.++...... ..++++.|+|++ +.+++|+.|+.|+.||+++++..+...
T Consensus 277 sfD~~lKlwDtETG~~~~~f~~~----~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd------------- 339 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRFHLD----KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD------------- 339 (503)
T ss_pred ecceeeeeeccccceEEEEEecC----CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-------------
Confidence 99999999999999777654433 258999999998 889999999999999999998544322
Q ss_pred CCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeee-------------------------------------
Q 015438 222 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR------------------------------------- 264 (407)
Q Consensus 222 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~------------------------------------- 264 (407)
.|-+.|..+.|-++|+++++.+.|++++||+.+..-++..
T Consensus 340 ---~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 340 ---RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred ---hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccc
Confidence 3666899999999999999999999999999875432211
Q ss_pred ---------eecc--CCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCC-CEEE
Q 015438 265 ---------ILAH--TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLI 332 (407)
Q Consensus 265 ---------~~~~--~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~ 332 (407)
+.+| .+.-..+.|| ++|.+|++|+.||.+.+||.+ +.+.+..+.+|..++..+.|+|.. ..+|
T Consensus 417 ~~r~nkkK~feGh~vaGys~~v~fS-pDG~~l~SGdsdG~v~~wdwk----t~kl~~~lkah~~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 417 PFRLNKKKRFEGHSVAGYSCQVDFS-PDGRTLCSGDSDGKVNFWDWK----TTKLVSKLKAHDQPCIGVDWHPVEPSKVA 491 (503)
T ss_pred ccccCHhhhhcceeccCceeeEEEc-CCCCeEEeecCCccEEEeech----hhhhhhccccCCcceEEEEecCCCcceeE
Confidence 1123 2345678998 899999999999999999999 889999999999999999999954 6799
Q ss_pred EEeCCCcEEEEE
Q 015438 333 SNGKDQAIKLWD 344 (407)
Q Consensus 333 s~~~dg~i~iwd 344 (407)
||+.||.|++||
T Consensus 492 t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 492 TCGWDGLIKIWD 503 (503)
T ss_pred ecccCceeEecC
Confidence 999999999997
No 56
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=5.6e-29 Score=217.40 Aligned_cols=287 Identities=17% Similarity=0.256 Sum_probs=209.9
Q ss_pred eeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeE----EeEeeeccccceEEEEEEECCCCCeEE
Q 015438 110 RYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSPDQRHLV 185 (407)
Q Consensus 110 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~sp~~~~l~ 185 (407)
...|......+.+|+..|.++++.|.|..|++|+.|-.|++||+..... ...+... ....|.++.|++.+..|+
T Consensus 153 ~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~--E~h~i~sl~ys~Tg~~iL 230 (641)
T KOG0772|consen 153 KLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC--ETHQINSLQYSVTGDQIL 230 (641)
T ss_pred hcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcc--cccccceeeecCCCCeEE
Confidence 4466666778899999999999999999999999999999999875321 1112222 233799999999999999
Q ss_pred EEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCCee-ee
Q 015438 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL-SL 263 (407)
Q Consensus 186 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~-~~ 263 (407)
+.+.....+|+|-...+.....+-.... .......||...++|.+|+|.. ..+++++.||++++||+...+. +.
T Consensus 231 vvsg~aqakl~DRdG~~~~e~~KGDQYI----~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 231 VVSGSAQAKLLDRDGFEIVEFSKGDQYI----RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred EEecCcceeEEccCCceeeeeeccchhh----hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 9888899999997665543332221111 1112235799999999999966 4799999999999999976542 22
Q ss_pred eee-----ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccC--CeEEEEecCCCCEEEEEeC
Q 015438 264 RIL-----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDGRYLISNGK 336 (407)
Q Consensus 264 ~~~-----~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~s~~~ 336 (407)
.+. +..-+++.++|+ +++++||+|+.||.|.+|+.+... .......-.+|.. .|++|+||+||++|++-|.
T Consensus 307 Vik~k~~~g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred EEeeccCCCcccCceeeecC-CCcchhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccccchhhhccC
Confidence 222 233468999998 899999999999999999986332 1122334456776 8999999999999999999
Q ss_pred CCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCC-------CcceEEEeCCc---------cceeeEEE
Q 015438 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-------DQSVATYKGHS---------VLRTLIRC 400 (407)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~~~v~~~~gh~---------~~~~~~~~ 400 (407)
|+++++||++.+++......++ ..-.+-+...|||+.++|..+. .+.+..|+.-+ ....|.+|
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~ 463 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRC 463 (641)
T ss_pred CCceeeeeccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEE
Confidence 9999999999988765443221 2234456678999999998653 24455555322 12357888
Q ss_pred eeCCC
Q 015438 401 HFSPV 405 (407)
Q Consensus 401 ~fsp~ 405 (407)
.|+|-
T Consensus 464 ~Whpk 468 (641)
T KOG0772|consen 464 LWHPK 468 (641)
T ss_pred eecch
Confidence 88873
No 57
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.8e-29 Score=231.93 Aligned_cols=273 Identities=15% Similarity=0.161 Sum_probs=187.9
Q ss_pred cCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEE--CCCCCeEEEEeCCCeEEEEE--
Q 015438 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL--SPDQRHLVYASMSPIVHIVD-- 197 (407)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~~dg~i~vwd-- 197 (407)
.|.+.|+++.||+||+|||+|+.|+.|+||.+........ ... .-.++-+ +.++..-.+.+..+.+.=-.
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~---~~~---~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRV---AEG---DSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcc---ccc---ccchhhhhhhhccccCccccccccccccccc
Confidence 8999999999999999999999999999999876422110 000 0111111 11111111111110000000
Q ss_pred CCCCceecccccc-ccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEE
Q 015438 198 VGSGTMESLANVT-EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (407)
Q Consensus 198 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 276 (407)
.++.....-..+. ....-..-......||.+.|.++.|+.++ +|++++.|.+|++|++...+++..| .|...|+||+
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-ecCCeeEEEE
Confidence 0000000000000 00000011122345899999999999766 8999999999999999999999888 7999999999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccC
Q 015438 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (407)
Q Consensus 277 ~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (407)
|+|.|.++|++|+-||.||||++. ...+..+.....-|++++|.|||++.+.|+.+|.+++|+....+.......
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~-----d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSIS-----DKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred ecccCCCcEeecccccceEEeecC-----cCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 999999999999999999999995 445555555668899999999999999999999999999998776655431
Q ss_pred C----CccccccceeeeCCCCC--CccCCCCCcceEEEeC-----------CccceeeEEEeeCCCCC
Q 015438 357 G----FRSYEWDYRWMDYPPQA--RDLKHPCDQSVATYKG-----------HSVLRTLIRCHFSPVYR 407 (407)
Q Consensus 357 ~----~~~~~~~v~~~~~~~~~--~~l~~~~~~~v~~~~g-----------h~~~~~~~~~~fsp~~~ 407 (407)
. .+.....|+.+.|.|.. ++|....|..|++|+| ..+....++..|+.|++
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk 559 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGK 559 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCC
Confidence 1 11222257777766543 5888889999999887 55667789999999875
No 58
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.8e-30 Score=210.61 Aligned_cols=248 Identities=20% Similarity=0.236 Sum_probs=199.9
Q ss_pred cCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeE-----eeeccccceEEEEEEECCCCCeEEEEeCCCeEEEE
Q 015438 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK-----DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (407)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vw 196 (407)
+..+.+.|..|||||++|++|+.||-|.+||..+|+.... ...+.-+..+|.|+.||.|...||+|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 5577889999999999999999999999999988742211 11223356689999999999999999999999999
Q ss_pred ECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEE
Q 015438 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (407)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 276 (407)
.++++.+...+.. +|+..|+|+.|+.|+..+++++.|-++++.-+++|++++.+++|.+.|+...
T Consensus 291 ri~tG~ClRrFdr---------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 291 RIETGQCLRRFDR---------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT 355 (508)
T ss_pred EEecchHHHHhhh---------------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence 9999998765532 4677899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEeCcccC----------------------------------------CCCceeeeecc--
Q 015438 277 FGDESGHLIYSGSDDNLCKVWDRRCLN----------------------------------------VKGKPAGVLMG-- 314 (407)
Q Consensus 277 ~s~~~~~~l~s~~~d~~i~vwd~~~~~----------------------------------------~~~~~~~~~~~-- 314 (407)
|. ++|+.+++++.||+|++|+.+..+ ..++.+.++..
T Consensus 356 ft-~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGk 434 (508)
T KOG0275|consen 356 FT-DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGK 434 (508)
T ss_pred Ec-CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCC
Confidence 98 899999999999999999986110 01222222211
Q ss_pred -ccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCC-CCcceEEEe
Q 015438 315 -HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYK 389 (407)
Q Consensus 315 -~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~ 389 (407)
..+...+++.+|.|.++...++|+.++.|.+.+++...+ ...++-++-.++-.|...+++.. .|+.++.|+
T Consensus 435 REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t----l~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 435 REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT----LPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee----eecccccccccccCcccchhhhhcccchhhhcC
Confidence 122344667899999999999999999999999877554 44566667777778888887764 467777764
No 59
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-28 Score=213.41 Aligned_cols=261 Identities=19% Similarity=0.240 Sum_probs=206.1
Q ss_pred ccccCCCceEEEEECCCCCE-EEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEE
Q 015438 119 PVDQTTSRAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd 197 (407)
.+....+.|.+++|+|...+ +|++ ..-.+.||+..+.........+ ...|.++.|..||++|++|...|.|+|+|
T Consensus 21 ~~~ke~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k~~srF---k~~v~s~~fR~DG~LlaaGD~sG~V~vfD 96 (487)
T KOG0310|consen 21 PVHKEHNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRKTFSRF---KDVVYSVDFRSDGRLLAAGDESGHVKVFD 96 (487)
T ss_pred ccccccCcceeEecCCCCCCceEEe-cccEEEEEecchhhhhhhHHhh---ccceeEEEeecCCeEEEccCCcCcEEEec
Confidence 33444678999999997665 4444 3457999998775333333333 34699999999999999999999999999
Q ss_pred CCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEE
Q 015438 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (407)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 276 (407)
+.+......+ .+|+.+|..+.|+|++ ..+++|+.|+.+++||+.+......+.+|...|.|.+
T Consensus 97 ~k~r~iLR~~----------------~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 97 MKSRVILRQL----------------YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred cccHHHHHHH----------------hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 7664332222 2578899999999965 5788899999999999999887668899999999999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccC
Q 015438 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (407)
Q Consensus 277 ~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (407)
|+|.+++++++|+.||.|++||+|. ....+.++ .|..+|..+.+-|.|..|++++ ...|++||+-++.+....
T Consensus 161 ~~~~~~hivvtGsYDg~vrl~DtR~---~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~-- 233 (487)
T KOG0310|consen 161 ISPANDHIVVTGSYDGKVRLWDTRS---LTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTS-- 233 (487)
T ss_pred cccCCCeEEEecCCCceEEEEEecc---CCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhh--
Confidence 9999999999999999999999993 22555555 4999999999999999999988 578999999977665543
Q ss_pred CCccccccceeeeCCCCC-CccCCCCCcceEEEeC------Cc--cceeeEEEeeCCCCC
Q 015438 357 GFRSYEWDYRWMDYPPQA-RDLKHPCDQSVATYKG------HS--VLRTLIRCHFSPVYR 407 (407)
Q Consensus 357 ~~~~~~~~v~~~~~~~~~-~~l~~~~~~~v~~~~g------h~--~~~~~~~~~fsp~~~ 407 (407)
...|.-.|+++.+..++ |+++.+-|+.+++|+- |+ ....++.+..|||.+
T Consensus 234 -~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 234 -MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQ 292 (487)
T ss_pred -hhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCc
Confidence 33477889999998775 7778888999999982 22 234677788888653
No 60
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.3e-29 Score=225.35 Aligned_cols=227 Identities=17% Similarity=0.226 Sum_probs=195.2
Q ss_pred ccccccceeeeeccCC----CCcccccCCCceEEEEECCCC-CEEEEEeCCCeEEEEEcCCCeEEeE------eeecccc
Q 015438 100 SAADCCHMLSRYLPVN----GPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQK------DILAKSL 168 (407)
Q Consensus 100 ~~~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~------~~~~~~~ 168 (407)
-+.|+..++|++-... ......+|++.|.+++++..+ .+|++++.|+++++|++...+.... ......|
T Consensus 383 ~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH 462 (775)
T KOG0319|consen 383 GSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH 462 (775)
T ss_pred ecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh
Confidence 3456777788772222 222447999999999998765 5789999999999999976322111 1234568
Q ss_pred ceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC
Q 015438 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (407)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 248 (407)
...|++++.+|+.+++|+|+.|.+.+||+++.......+. ||+..|.|+.|+|..+.++++|.|
T Consensus 463 dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs----------------GH~RGvw~V~Fs~~dq~laT~SgD 526 (775)
T KOG0319|consen 463 DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS----------------GHTRGVWCVSFSKNDQLLATCSGD 526 (775)
T ss_pred cccccceEecCCCceEEecccccceeeecccCceEEEEee----------------CCccceEEEEeccccceeEeccCC
Confidence 8899999999999999999999999999999666544433 788899999999999999999999
Q ss_pred CeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCC
Q 015438 249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG 328 (407)
Q Consensus 249 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 328 (407)
++|+||.+.+..++.++.+|...|..+.|- .++..|++++.||.|++|+++ +..++.++.+|...|.+++.+|.+
T Consensus 527 ~TvKIW~is~fSClkT~eGH~~aVlra~F~-~~~~qliS~~adGliKlWnik----t~eC~~tlD~H~DrvWaL~~~~~~ 601 (775)
T KOG0319|consen 527 KTVKIWSISTFSCLKTFEGHTSAVLRASFI-RNGKQLISAGADGLIKLWNIK----TNECEMTLDAHNDRVWALSVSPLL 601 (775)
T ss_pred ceEEEEEeccceeeeeecCccceeEeeeee-eCCcEEEeccCCCcEEEEecc----chhhhhhhhhccceeEEEeecCcc
Confidence 999999999999999999999999999997 889999999999999999999 899999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCC
Q 015438 329 RYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~~ 347 (407)
.+++||+.||.|.+|.=.+
T Consensus 602 ~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 602 DMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred ceeEecCCCeEEEEeecCc
Confidence 9999999999999997444
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.1e-27 Score=240.28 Aligned_cols=245 Identities=19% Similarity=0.221 Sum_probs=195.9
Q ss_pred CCCceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC-CCCeEEEEeCCCeEEEEECCC
Q 015438 123 TTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGS 200 (407)
Q Consensus 123 h~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~i~vwd~~~ 200 (407)
+...|.+++|+| ++.+|++++.||.|+|||+.++..+. ....|...|++++|+| ++.+|++|+.|+.|++||+.+
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~ 607 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC
Confidence 456899999987 47899999999999999999875443 3456888999999997 788999999999999999988
Q ss_pred CceeccccccccccceeeeecCCCCccccEEEEEEe-CCCCEEEEeeCCCeEEEEEcCCCe-eeeeeeccCCCeEEEEec
Q 015438 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-TDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFG 278 (407)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~i~~s 278 (407)
+....... +...|.++.|+ +++.+|++|+.||.|++||+++.+ .+..+.+|...|.++.|.
T Consensus 608 ~~~~~~~~-----------------~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~ 670 (793)
T PLN00181 608 GVSIGTIK-----------------TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV 670 (793)
T ss_pred CcEEEEEe-----------------cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe
Confidence 76543322 11268899995 478999999999999999998765 566778999999999995
Q ss_pred CCCCCEEEEEeCCCcEEEEeCcccC--CCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccC
Q 015438 279 DESGHLIYSGSDDNLCKVWDRRCLN--VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (407)
Q Consensus 279 ~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (407)
++.+|++++.|+.|++||++... ....++..+.+|...+..++|+|++.+|++|+.|+.|++|+.........+..
T Consensus 671 --~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 671 --DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred --CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 57789999999999999997321 12357788999999999999999999999999999999999876543322110
Q ss_pred C---------CccccccceeeeCCCCCCccC-CCCCcceEEEe
Q 015438 357 G---------FRSYEWDYRWMDYPPQARDLK-HPCDQSVATYK 389 (407)
Q Consensus 357 ~---------~~~~~~~v~~~~~~~~~~~l~-~~~~~~v~~~~ 389 (407)
. ...+...|..+.|+|++..|+ ++.++.|++|+
T Consensus 749 ~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 749 KTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred ccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 0 122334588999999986654 55678899885
No 62
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.1e-27 Score=223.27 Aligned_cols=253 Identities=16% Similarity=0.123 Sum_probs=188.7
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEE----------eEeeeccccceEEEEEEECC-CCCeEEEEeCCCe
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI----------QKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPI 192 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~ 192 (407)
-..|.....++++..+++++.+.....|+...+..+ .......+|.+.|.+++|+| ++++|++|+.|++
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 345566667777666777777777777775444221 11123457888999999999 8899999999999
Q ss_pred EEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCCeeeeeeeccCCC
Q 015438 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (407)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 271 (407)
|++||+..+....... . ......+|...|.+++|+|++ ++|++|+.|++|++||+++++.+..+..|...
T Consensus 100 IkIWdi~~~~~~~~~~--~-------~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 100 IMGWGIPEEGLTQNIS--D-------PIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEEecCCCccccccC--c-------ceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999997653211000 0 001123578899999999986 69999999999999999999998899899999
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCC-eEEEEecCCCCEEEEEe----CCCcEEEEECC
Q 015438 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-ITFIDSRGDGRYLISNG----KDQAIKLWDIR 346 (407)
Q Consensus 272 v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~s~~----~dg~i~iwd~~ 346 (407)
|.+++|+ +++.+|++++.|+.|++||++ .++.+..+.+|.+. +..+.|.+++..|++++ .|+.|++||++
T Consensus 171 V~sla~s-pdG~lLatgs~Dg~IrIwD~r----sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 171 ITSLEWN-LDGSLLCTTSKDKKLNIIDPR----DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred eEEEEEE-CCCCEEEEecCCCEEEEEECC----CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 9999998 789999999999999999999 78888888888765 45678999888887765 47899999999
Q ss_pred CCCCcccccCCCccccccceeeeCCCCCCccCCC--CCcceEEEeCCc
Q 015438 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP--CDQSVATYKGHS 392 (407)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~v~~~~gh~ 392 (407)
+......... ......+....|++++.+|..+ .|+.|++|+-..
T Consensus 246 ~~~~p~~~~~--~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 246 KMASPYSTVD--LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred CCCCceeEec--cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 8764332211 0111223345678998777654 489999997543
No 63
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.7e-29 Score=210.73 Aligned_cols=229 Identities=24% Similarity=0.336 Sum_probs=195.7
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 015438 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (407)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~ 202 (407)
....|+|+.+. ...+++|..|++|+|||..+-.+. ....+|.+.|.|+.| +.+.|++|+.|.+|+|||+++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~---~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECL---KILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHH---HhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc
Confidence 46789999996 456999999999999998775333 356789999999998 56799999999999999999998
Q ss_pred eeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCe---eeeeeeccCCCeEEEEecC
Q 015438 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILAHTSDVNTVCFGD 279 (407)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~i~~s~ 279 (407)
+....- +|...|..+.|+ ..++++++.|.+|.+||+.... +...+.+|...|+.+.|+
T Consensus 269 ~l~tli----------------hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd- 329 (499)
T KOG0281|consen 269 PLNTLI----------------HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD- 329 (499)
T ss_pred hhhHHh----------------hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc-
Confidence 866543 366689999997 4489999999999999998764 345577999999999995
Q ss_pred CCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCc
Q 015438 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (407)
Q Consensus 280 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (407)
.+++++++.|.+|++|++. ++..+.++.+|..+|.++.+ .|+++++|+.|.+|++||+..++++.. ..
T Consensus 330 --~kyIVsASgDRTikvW~~s----t~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRv----Le 397 (499)
T KOG0281|consen 330 --DKYIVSASGDRTIKVWSTS----TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV----LE 397 (499)
T ss_pred --cceEEEecCCceEEEEecc----ceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHH----Hh
Confidence 4599999999999999998 99999999999999999888 799999999999999999999988765 44
Q ss_pred cccccceeeeCCCCCCccCCCCCcceEEEeC
Q 015438 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390 (407)
Q Consensus 360 ~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~g 390 (407)
+++--|+++.|.. .++++.+.|+.|++|+-
T Consensus 398 GHEeLvRciRFd~-krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 398 GHEELVRCIRFDN-KRIVSGAYDGKIKVWDL 427 (499)
T ss_pred chHHhhhheeecC-ceeeeccccceEEEEec
Confidence 5666788888854 68888999999999984
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.9e-28 Score=225.42 Aligned_cols=251 Identities=18% Similarity=0.219 Sum_probs=211.2
Q ss_pred cccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 015438 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (407)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~ 199 (407)
++.-+..|..++|+|...+++++-..|.|++||..-+..+. .+.+|.++|..+.|+|++.++++|+.|-.|+||+..
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 44557889999999999999999999999999988764443 467899999999999999999999999999999999
Q ss_pred CCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecC
Q 015438 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (407)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~ 279 (407)
+..+.-... ||-..|..+.|++.-.+|+++|.|-+|+||+..+++++..+++|...|.|..|+
T Consensus 82 ~rrclftL~----------------GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh- 144 (1202)
T KOG0292|consen 82 TRRCLFTLL----------------GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH- 144 (1202)
T ss_pred cceehhhhc----------------cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC-
Confidence 887654332 677789999999999999999999999999999999999999999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEeCcccC-------------------------CCCceeeeeccccCCeEEEEecCCCCEEEEE
Q 015438 280 ESGHLIYSGSDDNLCKVWDRRCLN-------------------------VKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334 (407)
Q Consensus 280 ~~~~~l~s~~~d~~i~vwd~~~~~-------------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 334 (407)
|...+++++|-|.+|||||+.-.. ...-....+.||..+|+.++|+|.-..|++|
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG 224 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG 224 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec
Confidence 778899999999999999985211 0111234678999999999999999999999
Q ss_pred eCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCC-CccCCCCCcceEEEeCCc
Q 015438 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-RDLKHPCDQSVATYKGHS 392 (407)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~v~~~~gh~ 392 (407)
+.|..|++|.++..+. .+... -.+|--+|+++-|+|.. -+|+.+-|+++++|+-.+
T Consensus 225 ~DDRqVKlWrmnetKa-WEvDt-crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETKA-WEVDT-CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred CCcceeeEEEeccccc-eeehh-hhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 9999999999886543 11111 34566788999999975 555667899999998543
No 65
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.4e-28 Score=201.64 Aligned_cols=262 Identities=17% Similarity=0.222 Sum_probs=212.2
Q ss_pred CcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEE
Q 015438 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (407)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vw 196 (407)
...+.+|...|+.++-......+.+++.|.+-+||.++++.++. ...+|.+.|++++|++.+.++++++.|++.+||
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~---~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA---TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeecccccee---eecccccceeeEEeccccceEEEccCCcchHHH
Confidence 45678999999999998888889999999999999999997665 467899999999999999999999999999999
Q ss_pred ECC------CCcee-------cccccc---------cccc--ceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEE
Q 015438 197 DVG------SGTME-------SLANVT---------EIHD--GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (407)
Q Consensus 197 d~~------~~~~~-------~~~~~~---------~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 252 (407)
... ..... ...... ...+ .+........+|...|.+..|-..|+.+++++.|.+..
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 722 11000 000000 0001 12333344467889999999999999999999999999
Q ss_pred EEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEE
Q 015438 253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI 332 (407)
Q Consensus 253 i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 332 (407)
+||+++++++..+.+|....+.++-+ +..+++++++.|.+.++||+| ..-..+..+.||...|+++.|..+. .++
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstH-ptQrLVvTsSrDtTFRLWDFR---eaI~sV~VFQGHtdtVTS~vF~~dd-~vV 372 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTH-PTQRLVVTSSRDTTFRLWDFR---EAIQSVAVFQGHTDTVTSVVFNTDD-RVV 372 (481)
T ss_pred eeeeccCceeccccCcchhccccccC-CcceEEEEeccCceeEeccch---hhcceeeeecccccceeEEEEecCC-cee
Confidence 99999999999999999999999998 788999999999999999998 2456788999999999999998765 589
Q ss_pred EEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCC-cceEEEeC
Q 015438 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD-QSVATYKG 390 (407)
Q Consensus 333 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~v~~~~g 390 (407)
+|+.|.+|++||++++...... -....++..++.+..+.+++.+.| +.|++|+-
T Consensus 373 SgSDDrTvKvWdLrNMRsplAT----IRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSPLAT----IRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred ecCCCceEEEeeeccccCccee----eecCCccceeEeecCCceEEeccCCceEEEEec
Confidence 9999999999999998764321 123455677788888888888865 67888873
No 66
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.8e-27 Score=203.95 Aligned_cols=238 Identities=16% Similarity=0.246 Sum_probs=202.0
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCce
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~ 203 (407)
...+.++...|....+++|+.|..+.++|...+. ....+++|...|+.+.++|+...+++++.|..|+||.......
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q---~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ---ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhh---hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence 3567888888887889999999999999988763 3346788999999999999999999999999999999876553
Q ss_pred eccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeecc--CCCeEEEEecCCC
Q 015438 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH--TSDVNTVCFGDES 281 (407)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~i~~s~~~ 281 (407)
..... .|..+|+.+..+|+|.||++++.|++..+.|++++..+...... .-.+++.+|+ |+
T Consensus 296 ~~~~~----------------~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH-pD 358 (506)
T KOG0289|consen 296 PTSSR----------------PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH-PD 358 (506)
T ss_pred ccccc----------------cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc-CC
Confidence 32221 36668999999999999999999999999999999987765432 2348999998 89
Q ss_pred CCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccc
Q 015438 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 361 (407)
Q Consensus 282 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (407)
|.+|.+|..|+.|+|||+. ....+..+.+|.++|..++|+.+|.||+++++|+.|++||+|+.+...++....
T Consensus 359 gLifgtgt~d~~vkiwdlk----s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~--- 431 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLK----SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE--- 431 (506)
T ss_pred ceEEeccCCCceEEEEEcC----CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc---
Confidence 9999999999999999998 777888999999999999999999999999999999999999998777764422
Q ss_pred cccceeeeCCCCCCccCCCCCcceEEEe
Q 015438 362 EWDYRWMDYPPQARDLKHPCDQSVATYK 389 (407)
Q Consensus 362 ~~~v~~~~~~~~~~~l~~~~~~~v~~~~ 389 (407)
...+..+.|.+.|.+|..+ +..+.+|.
T Consensus 432 ~~~v~s~~fD~SGt~L~~~-g~~l~Vy~ 458 (506)
T KOG0289|consen 432 KKEVNSLSFDQSGTYLGIA-GSDLQVYI 458 (506)
T ss_pred cccceeEEEcCCCCeEEee-cceeEEEE
Confidence 2367889999999998776 45555554
No 67
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.9e-27 Score=195.25 Aligned_cols=280 Identities=16% Similarity=0.180 Sum_probs=203.5
Q ss_pred cccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCe-----EEeEeeeccccceEEEEEEECCCCCeEEEEe-CCC
Q 015438 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-----KIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSP 191 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg 191 (407)
..+.+|.+.|++++|+.||++||+++.|+.|+||+++.-. .+... .... ..+.+.|+||-+-+++.. ...
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~d---hpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYD---HPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCC---CceEEEECCCcceEEEEEccCC
Confidence 4678999999999999999999999999999999987631 11111 1122 378899999987766654 556
Q ss_pred eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCC
Q 015438 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (407)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 271 (407)
++++|.+...+-..........+...| ...|+..+..+-...++.+|++++.|..|.+|+++ |+.+..+......
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f----~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~ 230 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEF----ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS 230 (420)
T ss_pred EEEEEEeeecccCCCCccccccccccc----chhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc
Confidence 899998764332111111100010111 12356677778888888999999999999999999 8888888777777
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCcccC----CCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 015438 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN----VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 272 v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 347 (407)
-+..+.| |+|+++++++..-.|++|.+--.+ .+-..+..+.||.+.|+.++|+++.+.++|.+.||+++|||++-
T Consensus 231 n~~aavS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 231 NYDAAVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ccceeeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 7888998 899999999999999999863110 12345567899999999999999999999999999999999763
Q ss_pred C----CCccccc---CCCccccccceeeeCCCCCCccCCCCCcceEEEeCCc----------cceeeEEEeeCCCCC
Q 015438 348 M----SSNASCN---LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS----------VLRTLIRCHFSPVYR 407 (407)
Q Consensus 348 ~----~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh~----------~~~~~~~~~fsp~~~ 407 (407)
. +....+. ............+..+|.+..|+.+.+..++.|.... ....+..+.|+|++|
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~ 386 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGK 386 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCc
Confidence 2 2221111 1122222333478899999999999999999996321 112577789999875
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.5e-27 Score=222.67 Aligned_cols=254 Identities=22% Similarity=0.214 Sum_probs=215.9
Q ss_pred ccccceeeeeccCCCCcc-cccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC
Q 015438 102 ADCCHMLSRYLPVNGPWP-VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (407)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (407)
.++.+.+|...+...... +.+|.+.|+++++..-+.+|++|+.|.++++||..+|.+... ..+|...|.++.. .
T Consensus 226 ~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~---l~gh~stv~~~~~--~ 300 (537)
T KOG0274|consen 226 DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS---LQGHTSSVRCLTI--D 300 (537)
T ss_pred CCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE---ecCCCceEEEEEc--c
Confidence 344444777777777777 999999999999998889999999999999999999977664 4578888988886 4
Q ss_pred CCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCe
Q 015438 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (407)
Q Consensus 181 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 260 (407)
...+++|+.|.+|++|+++++....+.. +|.++|.++..+ +.++++|+.|++|.+||+.+++
T Consensus 301 ~~~~~sgs~D~tVkVW~v~n~~~l~l~~----------------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 301 PFLLVSGSRDNTVKVWDVTNGACLNLLR----------------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK 362 (537)
T ss_pred CceEeeccCCceEEEEeccCcceEEEec----------------cccccEEEEEec--CCEEEEEecCceEEEEEhhhce
Confidence 4578888999999999999888766553 477899999997 7799999999999999999999
Q ss_pred eeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCC-ceeeeeccccCCeEEEEecCCCCEEEEEeCCCc
Q 015438 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 339 (407)
Q Consensus 261 ~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~ 339 (407)
++..+.+|...|.++.+. .. +.+++|+.|++|++||++ .. +++..+.+|.+-+..+.+ .+++|++++.|++
T Consensus 363 cl~sl~gH~~~V~sl~~~-~~-~~~~Sgs~D~~IkvWdl~----~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 363 CLKSLSGHTGRVYSLIVD-SE-NRLLSGSLDTTIKVWDLR----TKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT 434 (537)
T ss_pred eeeeecCCcceEEEEEec-Cc-ceEEeeeeccceEeecCC----chhhhhhhhcCCccccccccc--ccceeEecccccc
Confidence 999999999999999885 32 889999999999999998 66 899999999998877766 6889999999999
Q ss_pred EEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCCcceEEEeC
Q 015438 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390 (407)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~g 390 (407)
|++||...++++.+.... +...+..+.+. +..+++...++.+.+|+-
T Consensus 435 Ik~WD~~~~~~~~~~~~~---~~~~v~~l~~~-~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 435 IKLWDAEEGECLRTLEGR---HVGGVSALALG-KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred EEEeecccCceeeeeccC---CcccEEEeecC-cceEEEEecCCeeEEEec
Confidence 999999999988876442 44555555555 677888889999999963
No 69
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=6.5e-27 Score=196.43 Aligned_cols=220 Identities=17% Similarity=0.220 Sum_probs=187.5
Q ss_pred ccccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCC
Q 015438 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (407)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (407)
.|....+|..-.+..+..+.+|...|.++.|+.+|.+||+|..+|.|+||...++....... .....+.=+.|+|.+
T Consensus 84 gDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~---~e~~dieWl~WHp~a 160 (399)
T KOG0296|consen 84 GDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD---QEVEDIEWLKWHPRA 160 (399)
T ss_pred CCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee---cccCceEEEEecccc
Confidence 56667788888888888999999999999999999999999999999999999985554433 222246668999999
Q ss_pred CeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCee
Q 015438 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (407)
Q Consensus 182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 261 (407)
..|++|+.||.+-+|.+.++...+++. ||+.++++=.|.|+|+.++++..||+|++||+.++++
T Consensus 161 ~illAG~~DGsvWmw~ip~~~~~kv~~----------------Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 161 HILLAGSTDGSVWMWQIPSQALCKVMS----------------GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred cEEEeecCCCcEEEEECCCcceeeEec----------------CCCCCcccccccCCCceEEEEecCceEEEEecCCCce
Confidence 999999999999999998864433332 5777899999999999999999999999999988776
Q ss_pred eeeee---------------------------------------------------------------------------
Q 015438 262 SLRIL--------------------------------------------------------------------------- 266 (407)
Q Consensus 262 ~~~~~--------------------------------------------------------------------------- 266 (407)
+..+.
T Consensus 225 ~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G 304 (399)
T KOG0296|consen 225 LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACG 304 (399)
T ss_pred eEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcc
Confidence 44331
Q ss_pred --------------------ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecC
Q 015438 267 --------------------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (407)
Q Consensus 267 --------------------~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 326 (407)
.|..+|+.+.|- + ..+|++++.+|.|+.||.| +++.+..+.||..+|..++++|
T Consensus 305 ~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~-~-t~~l~t~c~~g~v~~wDaR----tG~l~~~y~GH~~~Il~f~ls~ 378 (399)
T KOG0296|consen 305 SVDGTIAIYDLAASTLRHICEHEDGVTKLKWL-N-TDYLLTACANGKVRQWDAR----TGQLKFTYTGHQMGILDFALSP 378 (399)
T ss_pred cccceEEEEecccchhheeccCCCceEEEEEc-C-cchheeeccCceEEeeecc----ccceEEEEecCchheeEEEEcC
Confidence 245677888885 4 6788999999999999999 9999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECC
Q 015438 327 DGRYLISNGKDQAIKLWDIR 346 (407)
Q Consensus 327 ~~~~l~s~~~dg~i~iwd~~ 346 (407)
+.++++|+|.|++.+||++.
T Consensus 379 ~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 379 QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCcEEEEecCCCeEEEEecC
Confidence 99999999999999999875
No 70
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-27 Score=213.22 Aligned_cols=264 Identities=17% Similarity=0.193 Sum_probs=218.7
Q ss_pred ccccccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC
Q 015438 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (407)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (407)
.+.+.+.++|....+......+.+...|+++.|+++|.+||+|..+|.|.|||....+.+... ...|...|-+++|+
T Consensus 193 Valg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~--~~~h~~rvg~laW~- 269 (484)
T KOG0305|consen 193 VALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL--RGSHASRVGSLAWN- 269 (484)
T ss_pred EEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc--cCCcCceeEEEecc-
Confidence 334556667777666655555556899999999999999999999999999999876555432 22278889999997
Q ss_pred CCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC
Q 015438 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (407)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 259 (407)
+..+.+|+.++.|..+|++..+.... . ..+|...|..++|++|+.++|+|+.|+.+.|||....
T Consensus 270 -~~~lssGsr~~~I~~~dvR~~~~~~~-~--------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 270 -SSVLSSGSRDGKILNHDVRISQHVVS-T--------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred -CceEEEecCCCcEEEEEEecchhhhh-h--------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence 67889999999999999987764332 1 2257889999999999999999999999999999888
Q ss_pred eeeeeeeccCCCeEEEEecCCCCCEEEEEe--CCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEe--
Q 015438 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-- 335 (407)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-- 335 (407)
.++..+..|.+.|.+++|+|-...+||+|+ .|+.|++||.. .+..+..+. ..+.|..|.|++..+-|+++-
T Consensus 334 ~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~----~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 334 EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN----TGARIDSVD-TGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC----CCcEecccc-cCCceeeEEEcCCCCEEEEecCC
Confidence 999999999999999999999999999986 68999999998 888887765 456799999999987777653
Q ss_pred CCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCcc-CCCCCcceEEEeCC
Q 015438 336 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL-KHPCDQSVATYKGH 391 (407)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~v~~~~gh 391 (407)
.++.|.||+..+++.+.. ...|...|-+++.+|+|..+ ..+.|++++.|+--
T Consensus 409 s~n~i~lw~~ps~~~~~~----l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 409 SENQITLWKYPSMKLVAE----LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred CCCcEEEEeccccceeee----ecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 577899999999777665 56677789999999998555 56689999999743
No 71
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=6.4e-28 Score=208.10 Aligned_cols=258 Identities=15% Similarity=0.205 Sum_probs=201.2
Q ss_pred ccCCCceEEEEECCCCCE-EEEEeCCCeEEEEEcCCCeEEe-------EeeeccccceEEEEEEECCC-CCeEEEEeCCC
Q 015438 121 DQTTSRAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQ-------KDILAKSLRWTVTDTSLSPD-QRHLVYASMSP 191 (407)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg 191 (407)
-.|.+.|+.+.+.|.... +|+.+..+.|.|||..+..... ......+|...-.+++|++. .-.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 468999999999997765 5566778899999986532111 12245567666788999985 45788999999
Q ss_pred eEEEEECCCCcee-ccccccccccceeeeecCCCCccccEEEEEEeCC-CCEEEEeeCCCeEEEEEcC--CCeeeeeeec
Q 015438 192 IVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLE--ANKLSLRILA 267 (407)
Q Consensus 192 ~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~ 267 (407)
.|++||+...... ....... ...+|...|..++|++- ..+|++++.|+.+.|||++ +.++.....+
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~----------~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKT----------IFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred cEEEEeccccccCCccccceE----------EeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 9999999865542 1111111 12368889999999994 4588999999999999999 5566677789
Q ss_pred cCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCC-CCEEEEEeCCCcEEEEECC
Q 015438 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIR 346 (407)
Q Consensus 268 ~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~~dg~i~iwd~~ 346 (407)
|.++|.|++|+|.++.+||+|+.|++|.+||+|+. .+++.++.+|...|.++.|+|+ ...||+++.|+.+.|||+.
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL---~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL---NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhc---ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 99999999999999999999999999999999964 4588999999999999999995 4678899999999999998
Q ss_pred CCCCccc----------ccCCCccccccceeeeCCCCCC--ccCCCCCcceEEEeCC
Q 015438 347 KMSSNAS----------CNLGFRSYEWDYRWMDYPPQAR--DLKHPCDQSVATYKGH 391 (407)
Q Consensus 347 ~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~~v~~~~gh 391 (407)
.....+. ....+++|...|..+.++|... +.+++.|+.+.+|+=.
T Consensus 348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 7655432 1122667777788888888863 3346788999999744
No 72
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=210.07 Aligned_cols=276 Identities=18% Similarity=0.223 Sum_probs=231.3
Q ss_pred cceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeE
Q 015438 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (407)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 184 (407)
-+++...+|......++.|.+.|..+.|-++...|++|+.|..|++|++...+ ........+..++|+++.|.++++.+
T Consensus 156 d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 156 DHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred chhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCceE
Confidence 56778889999999999999999999999999999999999999999987653 22333455666789999999999999
Q ss_pred EEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeee
Q 015438 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (407)
Q Consensus 185 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 264 (407)
++++.|+.+++|++........+. ||+..|+++.|......+++|+.|.+|++||+....+.++
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLs----------------GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLS----------------GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhc----------------ccccceeeehhhccccceeeccccchhhhhhhhhhheecc
Confidence 999999999999999876544432 6888999999998777799999999999999999888777
Q ss_pred eeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEE
Q 015438 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (407)
Q Consensus 265 ~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd 344 (407)
+. ....+.+|+.+ ...+++|..|++|++||.| ...+......+. .|+++..+++|..|.+++.|.++.+.|
T Consensus 299 ~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~R----s~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viD 369 (459)
T KOG0288|consen 299 VL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIR----SADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVID 369 (459)
T ss_pred cc-ccccccceEec---ceeeeecccccceEEEecc----CCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeee
Confidence 63 45567788875 5678899999999999999 778888877665 899999999999999999999999999
Q ss_pred CCCCCCcccccCCCccccccceeeeCCCCCCccCCC-CCcceEEEeCCc-----------cceeeEEEeeCCCC
Q 015438 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYKGHS-----------VLRTLIRCHFSPVY 406 (407)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~gh~-----------~~~~~~~~~fsp~~ 406 (407)
+++......+...--....+++.+.|||++.+++.+ .|+.|++|.-.+ ..-.+..+.|+|.+
T Consensus 370 lRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG 443 (459)
T KOG0288|consen 370 LRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG 443 (459)
T ss_pred cccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC
Confidence 999888777765444556678899999999888765 689999997321 11147888898865
No 73
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=4.6e-27 Score=201.47 Aligned_cols=263 Identities=19% Similarity=0.209 Sum_probs=208.8
Q ss_pred ccccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCC
Q 015438 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (407)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (407)
.+...++.+....+...++.||+..|+.+.|+|+...+++++.|..|+||...... .......|..+|+.+..+|.|
T Consensus 239 ~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---~~~~~~~h~~~V~~ls~h~tg 315 (506)
T KOG0289|consen 239 EDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---EPTSSRPHEEPVTGLSLHPTG 315 (506)
T ss_pred CCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc---CccccccccccceeeeeccCC
Confidence 44455666666677778899999999999999999999999999999999987653 333456688899999999999
Q ss_pred CeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCee
Q 015438 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (407)
Q Consensus 182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 261 (407)
.||++++.|++..+.|++++......... ...-.+++.+|+|||.+|.+|+.||.|+|||+.++..
T Consensus 316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~--------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~ 381 (506)
T KOG0289|consen 316 EYLLSASNDGTWAFSDISSGSQLTVVSDE--------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN 381 (506)
T ss_pred cEEEEecCCceEEEEEccCCcEEEEEeec--------------cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc
Confidence 99999999999999999998765443321 1122689999999999999999999999999999999
Q ss_pred eeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccc-cCCeEEEEecCCCCEEEEEeCCCcE
Q 015438 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAI 340 (407)
Q Consensus 262 ~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~~~dg~i 340 (407)
+..|.+|.++|..|+|+ .+|.+|++++.|+.|++||+| +.+...++.-. ..+|.+++|.+.|.+|+.++.|=.|
T Consensus 382 ~a~Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLR----Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 382 VAKFPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLR----KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred cccCCCCCCceeEEEec-cCceEEEEEecCCeEEEEEeh----hhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 99999999999999998 999999999999999999999 55555555422 2369999999999999999766555
Q ss_pred EEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCC-CCcceEEE
Q 015438 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATY 388 (407)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~ 388 (407)
++++ +.+...+.......+....+.+.|....++++.+ .|..+++|
T Consensus 457 y~~~--k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 457 YICK--KKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEEe--cccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 5554 3333333333344445566778888888777654 45555554
No 74
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.5e-27 Score=199.87 Aligned_cols=222 Identities=20% Similarity=0.284 Sum_probs=183.6
Q ss_pred cccceeeeeccCCC----CcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCC----------------------
Q 015438 103 DCCHMLSRYLPVNG----PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG---------------------- 156 (407)
Q Consensus 103 ~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---------------------- 156 (407)
++...+|..-+... ..+-.||...|-+++..++|.++++|+.|.+|+||+....
T Consensus 168 Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred CceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 34444554443322 2233599999999999999999999999999999993221
Q ss_pred eEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEe
Q 015438 157 WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (407)
Q Consensus 157 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 236 (407)
..........+|..+|.++.|++ ...+++++.|.+|+.||++++.......... .++|+..+
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-----------------sl~~i~~~ 309 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-----------------SLNCISYS 309 (423)
T ss_pred cccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc-----------------ceeEeecc
Confidence 01122345678999999999987 7789999999999999999988765544322 68999999
Q ss_pred CCCCEEEEeeCCCeEEEEEcCCCe---eeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCc-eeeee
Q 015438 237 TDGRELVAGSSDDCIYVYDLEANK---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGVL 312 (407)
Q Consensus 237 ~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~ 312 (407)
|..++|++|+.|..+++||.+++. ....+.+|.+-|.++.|+|.+..+|++|+.|+++++||+| ..+ ++..+
T Consensus 310 ~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR----S~k~plydI 385 (423)
T KOG0313|consen 310 PLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR----STKAPLYDI 385 (423)
T ss_pred cccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec----cCCCcceee
Confidence 999999999999999999999764 4466789999999999999999999999999999999999 444 99999
Q ss_pred ccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 015438 313 MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 313 ~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 347 (407)
.+|...|.++.|+ ++.+|++||.|++|+|+.-..
T Consensus 386 ~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 386 AGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred ccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 9999999999997 466899999999999997654
No 75
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.3e-26 Score=189.22 Aligned_cols=240 Identities=16% Similarity=0.225 Sum_probs=195.4
Q ss_pred cccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEee----------------------------------
Q 015438 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI---------------------------------- 163 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------------------------- 163 (407)
..+....+.|.++.|+++|.++++++.|..++|||..+++.+..+.
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 3455568899999999999999999999999999988764332211
Q ss_pred -------eccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEe
Q 015438 164 -------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (407)
Q Consensus 164 -------~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 236 (407)
...+|...|++++.+|-+..+++++.|++|++||++..++...+.... -..++|+
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~------------------~pi~AfD 149 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG------------------RPIAAFD 149 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC------------------CcceeEC
Confidence 126788899999999999999999999999999999887776665432 2358999
Q ss_pred CCCCEEEEeeCCCeEEEEEcCCC--eeeeeee---ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeee
Q 015438 237 TDGRELVAGSSDDCIYVYDLEAN--KLSLRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 311 (407)
Q Consensus 237 ~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~---~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 311 (407)
|+|-++|++.....|++||++.- .+..++. ......+.|.|| ++|++|+.++..+.+++.|.- .|.....
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS-~dGK~iLlsT~~s~~~~lDAf----~G~~~~t 224 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFS-PDGKSILLSTNASFIYLLDAF----DGTVKST 224 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEc-CCCCEEEEEeCCCcEEEEEcc----CCcEeee
Confidence 99999999988889999999864 2334433 335678999998 899999999999999999997 7888888
Q ss_pred eccccCCe---EEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCCc
Q 015438 312 LMGHLEGI---TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (407)
Q Consensus 312 ~~~~~~~i---~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 383 (407)
+.++...- ...+|+||++++++|+.||+|.+|+++++..+..... ....+++++.|+|.--+++.++..
T Consensus 225 fs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~---~~~~~~~~~~fnP~~~mf~sa~s~ 296 (311)
T KOG1446|consen 225 FSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG---PNGGPVSCVRFNPRYAMFVSASSN 296 (311)
T ss_pred EeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC---CCCCCccccccCCceeeeeecCce
Confidence 87775432 5678999999999999999999999999988877633 367788888899987777665543
No 76
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.1e-27 Score=202.63 Aligned_cols=268 Identities=17% Similarity=0.143 Sum_probs=219.0
Q ss_pred CcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEee--------------ec-cccceEEEEEEECCCC
Q 015438 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--------------LA-KSLRWTVTDTSLSPDQ 181 (407)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------~~-~~~~~~v~~~~~sp~~ 181 (407)
...+..|.-+|.+++++|+.++.++++.+++|.-|++.+++...... .. ..|...+.+++.|+|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 45667899999999999999999999999999999998875431111 11 2677889999999999
Q ss_pred CeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCee
Q 015438 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (407)
Q Consensus 182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 261 (407)
++|++|+.|..|.||+..+.+....+. +|.+.|.+++|-.....+++++.|+.|++|++.....
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~----------------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFK----------------GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhccc----------------ccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 999999999999999999987665432 6888999999998888999999999999999999999
Q ss_pred eeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEE
Q 015438 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341 (407)
Q Consensus 262 ~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~ 341 (407)
+.++.+|++.|..|... ..++.+.+|+.|+++++|++. ......+.+|.+.+-+++|-.+ ..|++|+.+|.|.
T Consensus 279 vetlyGHqd~v~~IdaL-~reR~vtVGgrDrT~rlwKi~-----eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDAL-SRERCVTVGGRDRTVRLWKIP-----EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIA 351 (479)
T ss_pred HHHHhCCccceeeechh-cccceEEeccccceeEEEecc-----ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEE
Confidence 99999999999999987 667777777799999999994 3344467788889999999754 5699999999999
Q ss_pred EEECCCCCCcccccCCCccccc--------cceeeeCCCCCCccCCC-CCcceEEEeCCccc------------eeeEEE
Q 015438 342 LWDIRKMSSNASCNLGFRSYEW--------DYRWMDYPPQARDLKHP-CDQSVATYKGHSVL------------RTLIRC 400 (407)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~~~-~~~~v~~~~gh~~~------------~~~~~~ 400 (407)
+|++-+.+++.+....++...- =++.++..|...+++++ ++++|+.|+-..+. .+|..+
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl 431 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSL 431 (479)
T ss_pred EeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEE
Confidence 9999999998876543332211 25677778888888765 58999999876652 345666
Q ss_pred eeCCCCC
Q 015438 401 HFSPVYR 407 (407)
Q Consensus 401 ~fsp~~~ 407 (407)
+|+++++
T Consensus 432 ~f~~sgk 438 (479)
T KOG0299|consen 432 AFSNSGK 438 (479)
T ss_pred EEccCCC
Confidence 7777653
No 77
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=6.4e-27 Score=188.14 Aligned_cols=250 Identities=16% Similarity=0.171 Sum_probs=209.6
Q ss_pred ccccceeeeeccCC--CCcccccCCCceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEEC
Q 015438 102 ADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (407)
Q Consensus 102 ~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (407)
.+....++...+.+ ......+|.+.|-.++|+|. ...|++++.|.+|++||...+++........+ =.-+.|+
T Consensus 40 ~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e----ni~i~ws 115 (313)
T KOG1407|consen 40 FDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE----NINITWS 115 (313)
T ss_pred cCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc----ceEEEEc
Confidence 44445555554442 23455789999999999984 57899999999999999999988876554433 2347899
Q ss_pred CCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCC
Q 015438 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (407)
Q Consensus 179 p~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 258 (407)
|+|+++++++.|..|...|.++.+....... ...+..++|+.++.+++..+..|+|.|.....
T Consensus 116 p~g~~~~~~~kdD~it~id~r~~~~~~~~~~-----------------~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps 178 (313)
T KOG1407|consen 116 PDGEYIAVGNKDDRITFIDARTYKIVNEEQF-----------------KFEVNEISWNNSNDLFFLTNGLGCVEILSYPS 178 (313)
T ss_pred CCCCEEEEecCcccEEEEEecccceeehhcc-----------------cceeeeeeecCCCCEEEEecCCceEEEEeccc
Confidence 9999999999999999999987765443332 23688899998888888887889999999999
Q ss_pred CeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCC
Q 015438 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ 338 (407)
Q Consensus 259 ~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg 338 (407)
-+++..+++|...+.||.|+ |+|++||+|+.|..+.+||+. +.-++..+..+.-+|..++|+.||++||+|++|.
T Consensus 179 Lkpv~si~AH~snCicI~f~-p~GryfA~GsADAlvSLWD~~----ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh 253 (313)
T KOG1407|consen 179 LKPVQSIKAHPSNCICIEFD-PDGRYFATGSADALVSLWDVD----ELICERCISRLDWPVRTLSFSHDGRMLASASEDH 253 (313)
T ss_pred cccccccccCCcceEEEEEC-CCCceEeeccccceeeccChh----HhhhheeeccccCceEEEEeccCcceeeccCccc
Confidence 99999999999999999997 899999999999999999998 8888999999999999999999999999999999
Q ss_pred cEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCC
Q 015438 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 382 (407)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 382 (407)
.|-|=++.++..+..+ .+..+...++++|...+|+-++|
T Consensus 254 ~IDIA~vetGd~~~eI-----~~~~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 254 FIDIAEVETGDRVWEI-----PCEGPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred eEEeEecccCCeEEEe-----eccCCceeEEecCCCceeeEEec
Confidence 9999999999887654 34556667889999999987665
No 78
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=3.4e-26 Score=214.40 Aligned_cols=231 Identities=16% Similarity=0.167 Sum_probs=171.9
Q ss_pred EeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC-CCeEEEEeCCCeEEEEECCCCceeccccccccccceeeee
Q 015438 142 GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (407)
Q Consensus 142 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 220 (407)
|+.++.|++|+...... .....+|...|.+++|+|+ +.+|++|+.|+.|+|||+.++..... .... ..
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~i~~-------p~ 118 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-EIKD-------PQ 118 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-cccc-------ce
Confidence 55678899999876432 3345678889999999996 78999999999999999986432100 0000 00
Q ss_pred cCCCCccccEEEEEEeCCCCE-EEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 015438 221 ADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 299 (407)
Q Consensus 221 ~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~ 299 (407)
....+|...|.+++|+|++.. |++++.|++|++||+++++.+..+. |...|.+++|+ ++|.+|++++.|+.|+|||+
T Consensus 119 ~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws-pdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 119 CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN-IKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC-CCCCEEEEEecCCEEEEEEC
Confidence 012357789999999999875 5789999999999999998777774 66789999998 88999999999999999999
Q ss_pred cccCCCCceeeeeccccCCeEEE-----EecCCCCEEEEEeCCC----cEEEEECCCCCCcccccCCCccccccceeeeC
Q 015438 300 RCLNVKGKPAGVLMGHLEGITFI-----DSRGDGRYLISNGKDQ----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 370 (407)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~i~~~-----~~s~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 370 (407)
+ .+..+..+.+|.+.+... .|++++.+|++++.|+ .|+|||+++........ .+......+.....
T Consensus 197 R----sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~-~ld~~~~~L~p~~D 271 (568)
T PTZ00420 197 R----KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM-SIDNASAPLIPHYD 271 (568)
T ss_pred C----CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE-EecCCccceEEeee
Confidence 9 788888899998765432 3568999999988774 79999999754322211 12223333344445
Q ss_pred CCCCCccCC-CCCcceEEEeC
Q 015438 371 PPQARDLKH-PCDQSVATYKG 390 (407)
Q Consensus 371 ~~~~~~l~~-~~~~~v~~~~g 390 (407)
++++.++.+ ..|+.|++|.-
T Consensus 272 ~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 272 ESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred CCCCCEEEEEECCCeEEEEEc
Confidence 666766654 48899999975
No 79
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=5.8e-26 Score=183.26 Aligned_cols=272 Identities=17% Similarity=0.153 Sum_probs=211.7
Q ss_pred CCCceecc-ccccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEE
Q 015438 94 SGRGRFSA-ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV 172 (407)
Q Consensus 94 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 172 (407)
.++..|+. .|...-+|....++......+|++.|+|++.+.+.+++++|+.|.++++||+++|+.+...... .+|
T Consensus 21 eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~----~~V 96 (327)
T KOG0643|consen 21 EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN----SPV 96 (327)
T ss_pred CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC----Cee
Confidence 45555644 4445557888899999999999999999999999999999999999999999999877664433 369
Q ss_pred EEEEECCCCCeEEEEeC-----CCeEEEEECCCCcee-----ccccccccccceeeeecCCCCccccEEEEEEeCCCCEE
Q 015438 173 TDTSLSPDQRHLVYASM-----SPIVHIVDVGSGTME-----SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (407)
Q Consensus 173 ~~~~~sp~~~~l~~~~~-----dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 242 (407)
..+.|+++|++++.+.. .+.|.++|++..... ....+. .+...++.+-|.|-++.|
T Consensus 97 k~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~--------------t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 97 KRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP--------------TPDSKITSALWGPLGETI 162 (327)
T ss_pred EEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec--------------CCccceeeeeecccCCEE
Confidence 99999999999888754 468999999844311 111111 122478999999999999
Q ss_pred EEeeCCCeEEEEEcCCCe-eeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEE
Q 015438 243 VAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 321 (407)
Q Consensus 243 ~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~ 321 (407)
++|..||.|.+||+++++ .+.....|...|+.++++ ++..++++++.|.+-++||.+ +...+.++. ...+|++
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~----tl~v~Kty~-te~PvN~ 236 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVR----TLEVLKTYT-TERPVNT 236 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhcccccccccc-CCcceEEecccCccceeeecc----ceeeEEEee-ecccccc
Confidence 999999999999999984 555567899999999998 889999999999999999998 777777776 4578999
Q ss_pred EEecCCCCEEEEEeCCCc--EEEEECCCCCCcccc--------cCCCccccccceeeeCCCCCCccCCCC-CcceEEEe
Q 015438 322 IDSRGDGRYLISNGKDQA--IKLWDIRKMSSNASC--------NLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYK 389 (407)
Q Consensus 322 ~~~s~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~v~~~~ 389 (407)
.+++|.-..++.|+.... |.-=+.+.++-...+ ....+.|-.++..++|+|+|...+++. |+.|++..
T Consensus 237 aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 237 AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence 999998777777664332 333333333322222 244678889999999999998888765 67777653
No 80
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.4e-27 Score=203.47 Aligned_cols=283 Identities=14% Similarity=0.168 Sum_probs=218.6
Q ss_pred CcccchhhhccCccCccCCC------cee--ccccccceeeeeccCC--CCcccccCCCceEEEEECCCCCEEEEEeCCC
Q 015438 77 HLPVSTVKMLAGREGNYSGR------GRF--SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQAS 146 (407)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg 146 (407)
..|......+..++..+... ..| ...++.+.+|+..+.+ ....+.+-.+.|+.+.|.++++.+++++.|+
T Consensus 162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~ 241 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDK 241 (459)
T ss_pred ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCC
Confidence 34555555666665554221 222 3356667788887776 6667888899999999999999999999999
Q ss_pred eEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCc
Q 015438 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY 226 (407)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (407)
.+++|+++...... .+.+|...|+++.|......+++|+.|.+|++||+....+........
T Consensus 242 ~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S--------------- 303 (459)
T KOG0288|consen 242 NLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS--------------- 303 (459)
T ss_pred ceeeeeccchhhhh---hhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc---------------
Confidence 99999998874333 466799999999998877779999999999999999876654433221
Q ss_pred cccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCC
Q 015438 227 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 306 (407)
Q Consensus 227 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 306 (407)
.+.+|+.+ ...+++|..|++|++||.++..+......+. .|+++..+ .++..+.+++.|.++.+.|++ ..
T Consensus 304 --~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls-~~g~~lLsssRDdtl~viDlR----t~ 373 (459)
T KOG0288|consen 304 --QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLS-MDGLELLSSSRDDTLKVIDLR----TK 373 (459)
T ss_pred --cccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeec-cCCeEEeeecCCCceeeeecc----cc
Confidence 45666665 5578999999999999999999988887654 99999998 888888899999999999998 55
Q ss_pred ceeeeeccc----cCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCC-CC
Q 015438 307 KPAGVLMGH----LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH-PC 381 (407)
Q Consensus 307 ~~~~~~~~~----~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~ 381 (407)
.....+.+. ....+.+.|||++.|+++||.||.|+||++.+++........ .....|.+++|+|.|+.|.+ ..
T Consensus 374 eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s--~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 374 EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS--TSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC--CCCcceEEEEEcCCCchhhcccC
Confidence 555555432 234889999999999999999999999999999887655322 22226899999999866654 45
Q ss_pred CcceEEEe
Q 015438 382 DQSVATYK 389 (407)
Q Consensus 382 ~~~v~~~~ 389 (407)
+..+.+|+
T Consensus 452 ~~~v~lW~ 459 (459)
T KOG0288|consen 452 QKAVTLWT 459 (459)
T ss_pred CcceEecC
Confidence 66666663
No 81
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.6e-27 Score=188.67 Aligned_cols=260 Identities=18% Similarity=0.146 Sum_probs=202.9
Q ss_pred ccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC--CCCeEEEEeCCCeEEEE
Q 015438 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV 196 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~dg~i~vw 196 (407)
+-..|...|..+...-.|++|||++.|++|+|+.+.+......+..+.+|.++|..++|.. .|.+||+++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 4567899999999888999999999999999999988755555667889999999999966 79999999999999999
Q ss_pred ECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCC--CCEEEEeeCCCeEEEEEcCCC---eeeeeeeccCCC
Q 015438 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN---KLSLRILAHTSD 271 (407)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~ 271 (407)
.-+.+...+.... ..|...|++++|.|. |-.|++++.||.|.|.+.+.. ...+....|.-.
T Consensus 86 ke~~g~w~k~~e~--------------~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 86 KEENGRWTKAYEH--------------AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred ecCCCchhhhhhh--------------hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 9888855433322 247789999999995 458999999999999998764 222345589999
Q ss_pred eEEEEecCCC--C-----------CEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCC----CEEEEE
Q 015438 272 VNTVCFGDES--G-----------HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG----RYLISN 334 (407)
Q Consensus 272 v~~i~~s~~~--~-----------~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~----~~l~s~ 334 (407)
|++++|.|.. | +.|++|+.|+.|+||+.... .-..-..+.+|...|..++|.|.- .+|+++
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence 9999998652 2 56999999999999999732 223445589999999999999953 589999
Q ss_pred eCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCC-CCcceEEEeCCccce
Q 015438 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYKGHSVLR 395 (407)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~gh~~~~ 395 (407)
+.||+|.||-.+.......... .......+-.+.+|..|.+|+++ +|+.+.+|+-..+..
T Consensus 230 SqDg~viIwt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 230 SQDGTVIIWTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred cCCCcEEEEEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 9999999998874322221111 22233334567789999999876 567788888665543
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=7.9e-27 Score=221.13 Aligned_cols=266 Identities=18% Similarity=0.159 Sum_probs=205.0
Q ss_pred cccCCCceEEEEECCCCCEEEEEe--CCCeEEEEEcCCC--------e-EEeEeeeccccceEEEEEEECCCCCeEEEEe
Q 015438 120 VDQTTSRAYVSQFSADGSLFVAGF--QASQIRIYDVERG--------W-KIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188 (407)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~--------~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 188 (407)
+.++...|.+++.+|+|..+|+|+ .|+.++||+.+.- . ..........|.+.|+|+.|+|||++||+|+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 445567899999999999999999 8999999997531 1 1122234567888999999999999999999
Q ss_pred CCCeEEEEECCCCceeccccccccccc--eeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeee
Q 015438 189 MSPIVHIVDVGSGTMESLANVTEIHDG--LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (407)
Q Consensus 189 ~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 266 (407)
+|+.|.||+.........+........ -.-......+|...|.+++|+|++.+|++++.|++|.+||.++.+.+..+.
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 999999999874111111110000000 000111234688899999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccC-------------------------------------------
Q 015438 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN------------------------------------------- 303 (407)
Q Consensus 267 ~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~------------------------------------------- 303 (407)
+|.+.|..+.|. |-|++|++-+.|++|+||++....
T Consensus 169 ~H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 169 GHQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred cccccccceEEC-CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 999999999995 999999999999999999964110
Q ss_pred -----CCCceeeeeccccCCeEEEEecCC-------------CC----EEEEEeCCCcEEEEECCCCCCcccccCCCccc
Q 015438 304 -----VKGKPAGVLMGHLEGITFIDSRGD-------------GR----YLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 361 (407)
Q Consensus 304 -----~~~~~~~~~~~~~~~i~~~~~s~~-------------~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (407)
...+.-..+-||..++.++.|+|. .. .+|+|+.|++|.||.....+++..+ +...
T Consensus 248 ~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi---~~lf 324 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI---HNLF 324 (942)
T ss_pred EEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh---hhhh
Confidence 011222346689999999999882 11 5788999999999999888887766 4556
Q ss_pred cccceeeeCCCCCC-ccCCCCCcceEEEe
Q 015438 362 EWDYRWMDYPPQAR-DLKHPCDQSVATYK 389 (407)
Q Consensus 362 ~~~v~~~~~~~~~~-~l~~~~~~~v~~~~ 389 (407)
...|..|.++|||. +++++.|++|..++
T Consensus 325 ~~SI~DmsWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 325 NKSIVDMSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred cCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence 67788899999995 55778899998886
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2e-25 Score=176.02 Aligned_cols=259 Identities=22% Similarity=0.275 Sum_probs=200.0
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcC------CC------eEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVE------RG------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~------~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 191 (407)
...|.+++|+|.|.+.++|+...+++|-... .+ .+.......+.|.+.|.|.+|+|+|++|++|+.|.
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 5679999999999999999999998876432 11 01112234567889999999999999999999999
Q ss_pred eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCC----CCEEEEee-CCCeEEEEEcCCCeeeeeee
Q 015438 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVAGS-SDDCIYVYDLEANKLSLRIL 266 (407)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~ 266 (407)
+|++...+...+...-.- +.| .-|.+.|..++|-.+ +.+|++++ .|..|++-|...++....+.
T Consensus 112 ~ik~l~fn~dt~~~~g~d------le~-----nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHD------LEF-----NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred eEEEEecccccccccCcc------eee-----eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 999988776544322111 111 136678999999753 34677654 46789999999999999999
Q ss_pred ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeecc--c-----cCCeEEEEecCCCCEEEEEeCCCc
Q 015438 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--H-----LEGITFIDSRGDGRYLISNGKDQA 339 (407)
Q Consensus 267 ~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~-----~~~i~~~~~s~~~~~l~s~~~dg~ 339 (407)
+|.+-|.++-- -++-++++|+.|.+|++||+| -..++.++.. | .+.|.+++..|.|++|++|-.|..
T Consensus 181 ghtghilalys--wn~~m~~sgsqdktirfwdlr----v~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss 254 (350)
T KOG0641|consen 181 GHTGHILALYS--WNGAMFASGSQDKTIRFWDLR----VNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS 254 (350)
T ss_pred CCcccEEEEEE--ecCcEEEccCCCceEEEEeee----ccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence 99999988732 358899999999999999999 5566665532 2 356999999999999999999999
Q ss_pred EEEEECCCCCCcccccCCCccccccceeeeCCCCCCcc-CCCCCcceEEEe---------------CCccceeeEEEeeC
Q 015438 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL-KHPCDQSVATYK---------------GHSVLRTLIRCHFS 403 (407)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~v~~~~---------------gh~~~~~~~~~~fs 403 (407)
..+||++.+..++. ...+..+|+++.|+|...++ .++.|..|++-+ .|.+ .+|.|.|+
T Consensus 255 c~lydirg~r~iq~----f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd--k~i~~rwh 328 (350)
T KOG0641|consen 255 CMLYDIRGGRMIQR----FHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD--KAIQCRWH 328 (350)
T ss_pred eEEEEeeCCceeee----eCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccC--ceEEEEec
Confidence 99999999888776 45678899999999998554 566676666554 3443 67889999
Q ss_pred CC
Q 015438 404 PV 405 (407)
Q Consensus 404 p~ 405 (407)
|.
T Consensus 329 ~~ 330 (350)
T KOG0641|consen 329 PQ 330 (350)
T ss_pred Cc
Confidence 85
No 84
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=9.2e-28 Score=198.70 Aligned_cols=222 Identities=20% Similarity=0.255 Sum_probs=174.7
Q ss_pred eEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCC
Q 015438 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (407)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 249 (407)
..+-|..|||||++|++|+-||.|.+|+..+++...-.+...... .--+...|.|+.|+.|..++++|+.||
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~--------fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDN--------FMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcc--------eeecccceEEEeecccHHHhhccCcCC
Confidence 348899999999999999999999999999987654333221110 012445899999999999999999999
Q ss_pred eEEEEEcCCCeeeeeee-ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCC
Q 015438 250 CIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG 328 (407)
Q Consensus 250 ~i~i~d~~~~~~~~~~~-~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 328 (407)
.|++|.+++|.+++.+. +|...|+++.|+ .++..+++++.|.++++.-++ .++++..++||.+.|+...|++||
T Consensus 286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlK----SGK~LKEfrGHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLK----SGKCLKEFRGHSSYVNEATFTDDG 360 (508)
T ss_pred cEEEEEEecchHHHHhhhhhccCeeEEEEc-cCcchhhcccccceEEEeccc----cchhHHHhcCccccccceEEcCCC
Confidence 99999999999999987 899999999998 777788899999999999998 999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeC-CCC-CCccCCCCCcc----------eEEEe-CCccce
Q 015438 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY-PPQ-ARDLKHPCDQS----------VATYK-GHSVLR 395 (407)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~-~~~l~~~~~~~----------v~~~~-gh~~~~ 395 (407)
.++++++.||+|++|+.++.+++.++... ....++..+-. +.+ ..++.+...++ ++.|. |.....
T Consensus 361 ~~iisaSsDgtvkvW~~KtteC~~Tfk~~--~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgG 438 (508)
T KOG0275|consen 361 HHIISASSDGTVKVWHGKTTECLSTFKPL--GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGG 438 (508)
T ss_pred CeEEEecCCccEEEecCcchhhhhhccCC--CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCC
Confidence 99999999999999999999998887542 23344443332 222 24444444333 34442 333333
Q ss_pred eeEEEeeCCCC
Q 015438 396 TLIRCHFSPVY 406 (407)
Q Consensus 396 ~~~~~~fsp~~ 406 (407)
-.+.++.||-+
T Consensus 439 dFi~~~lSpkG 449 (508)
T KOG0275|consen 439 DFINAILSPKG 449 (508)
T ss_pred ceEEEEecCCC
Confidence 45777777753
No 85
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=9.1e-27 Score=212.11 Aligned_cols=208 Identities=22% Similarity=0.348 Sum_probs=180.6
Q ss_pred ccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCC-----Ce--EEeEe--eeccccceEEEEEEECCCCCeEEEEeC
Q 015438 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----GW--KIQKD--ILAKSLRWTVTDTSLSPDQRHLVYASM 189 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-----~~--~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~ 189 (407)
....|.+.|+.++.+||++.+++|+.|.+|++||..- +. +.... ...-.....|.|+.+|||+++|+++-.
T Consensus 449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL 528 (888)
T KOG0306|consen 449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL 528 (888)
T ss_pred hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec
Confidence 3458999999999999999999999999999999742 11 10000 001122346999999999999999999
Q ss_pred CCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccC
Q 015438 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (407)
Q Consensus 190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 269 (407)
|.+|+||-+.+-+..- ...||.-+|.||..+||++++++|+.|.+|+||-+.-|.+-+.+.+|+
T Consensus 529 dnTVkVyflDtlKFfl----------------sLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHd 592 (888)
T KOG0306|consen 529 DNTVKVYFLDTLKFFL----------------SLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHD 592 (888)
T ss_pred cCeEEEEEecceeeee----------------eecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhccc
Confidence 9999999998765422 234799999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 015438 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 270 ~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 347 (407)
..|.++.|. |...++.+++.|+.|+-||-. ....++.+.+|...|.+++.+|+|.++++++.|.+|++|....
T Consensus 593 DSvm~V~F~-P~~~~FFt~gKD~kvKqWDg~----kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 593 DSVMSVQFL-PKTHLFFTCGKDGKVKQWDGE----KFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred CceeEEEEc-ccceeEEEecCcceEEeechh----hhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999998 578889999999999999998 7889999999999999999999999999999999999999765
No 86
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-26 Score=200.37 Aligned_cols=235 Identities=21% Similarity=0.274 Sum_probs=189.1
Q ss_pred ccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC-CCeEEEEeCCCeEEEEE
Q 015438 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVD 197 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~i~vwd 197 (407)
.+......|+++.|-.||++||+|...|.|+|||..+. . .......|..+|..+.|+|+ +..|++|++|+.+++||
T Consensus 63 ~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-~--iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 63 TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-V--ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-H--HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 35567889999999999999999999999999995542 1 22346778889999999995 55667788899999999
Q ss_pred CCCCceeccccccccccceeeeecCCCCccccEEEEEEeCC-CCEEEEeeCCCeEEEEEcCCC-eeeeeeeccCCCeEEE
Q 015438 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTV 275 (407)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i 275 (407)
+.+.... . ...+|+..|.|.+|+|- +.++++|+.||.|++||+++. ..+..+ .|..+|..+
T Consensus 140 ~s~a~v~--~--------------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~v 202 (487)
T KOG0310|consen 140 LSTAYVQ--A--------------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESV 202 (487)
T ss_pred cCCcEEE--E--------------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeE
Confidence 9887631 1 12268889999999995 558999999999999999987 566666 799999999
Q ss_pred EecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCccccc
Q 015438 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (407)
Q Consensus 276 ~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (407)
.+- +.|.++++++. ..|+|||+- ..++.+..+..|...|||+.+..++..|++++-|+.|++||+.+.+....+
T Consensus 203 l~l-psgs~iasAgG-n~vkVWDl~---~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~- 276 (487)
T KOG0310|consen 203 LAL-PSGSLIASAGG-NSVKVWDLT---TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW- 276 (487)
T ss_pred EEc-CCCCEEEEcCC-CeEEEEEec---CCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee-
Confidence 998 77888888864 489999996 134445555569999999999999999999999999999998887765533
Q ss_pred CCCccccccceeeeCCCCCCccCCCCCc
Q 015438 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (407)
Q Consensus 356 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 383 (407)
....+|-.++.+|+++.+..+-.+
T Consensus 277 ----~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 277 ----KYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred ----ecccceeeEEecCCCceEEEeccc
Confidence 334567788889988777766443
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=4.4e-26 Score=182.26 Aligned_cols=263 Identities=13% Similarity=0.158 Sum_probs=218.2
Q ss_pred CCCcccccCCCceEEEEECC---CCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC
Q 015438 115 NGPWPVDQTTSRAYVSQFSA---DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (407)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 191 (407)
+.|.+..+|+.+|-.++||| +|-+|++++.|+.-.+-+-++|..+.. +.+|.+.|++.+++.+....++++.|-
T Consensus 5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt---feghkgavw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT---FEGHKGAVWSATLNKNATRAASAAADF 81 (334)
T ss_pred cCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe---eeccCcceeeeecCchhhhhhhhcccc
Confidence 34677789999999999996 788999999999998888888866654 678888999999999988899999999
Q ss_pred eEEEEECCCCceeccccccccccceeeeec--------------------------CCCCccccEEEEEEeCCCCEEEEe
Q 015438 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAA--------------------------DDGGYSFGIFSLKFSTDGRELVAG 245 (407)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~v~~~~~s~~~~~l~~~ 245 (407)
+-+|||.-++.....+..........|... ...+|++.|..+-|....+.|++.
T Consensus 82 takvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 999999988876555544433333333222 225789999999999999999999
Q ss_pred eCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEec
Q 015438 246 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (407)
Q Consensus 246 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 325 (407)
+.|++|++||.++++.+..+. ...+|+++.++ ++|++|.+ ...+.|.+||.. ...++..+. -...|.+.+++
T Consensus 162 add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs-~dG~ilTi-a~gssV~Fwdak----sf~~lKs~k-~P~nV~SASL~ 233 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVS-QDGRILTI-AYGSSVKFWDAK----SFGLLKSYK-MPCNVESASLH 233 (334)
T ss_pred ccCCceEEEEeccCcEEEEEe-cCCCCcceeec-cCCCEEEE-ecCceeEEeccc----cccceeecc-Ccccccccccc
Confidence 999999999999999999885 57789999998 88887744 567799999998 666666654 34568999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCC-CCcceEEEeCC
Q 015438 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYKGH 391 (407)
Q Consensus 326 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~gh 391 (407)
|+...++.|++|..++.||..++..+..+ .+.+-.+|.++.|+|+|-+-+++ .|++|++|+-.
T Consensus 234 P~k~~fVaGged~~~~kfDy~TgeEi~~~---nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 234 PKKEFFVAGGEDFKVYKFDYNTGEEIGSY---NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred CCCceEEecCcceEEEEEeccCCceeeec---ccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 99999999999999999999999887764 46777899999999999888766 58999999843
No 88
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=8.4e-27 Score=186.34 Aligned_cols=220 Identities=16% Similarity=0.226 Sum_probs=184.2
Q ss_pred cceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeE
Q 015438 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (407)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 184 (407)
...+|+...+.....+ .|..-|.+++|+.|.++|++|+.+..++|||++..+ .......+|.+.|..+.|....+.|
T Consensus 82 takvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~--App~E~~ghtg~Ir~v~wc~eD~~i 158 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK--APPKEISGHTGGIRTVLWCHEDKCI 158 (334)
T ss_pred hhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCC--CCchhhcCCCCcceeEEEeccCceE
Confidence 3445555554444443 478899999999999999999999999999997643 2333456788899999999999999
Q ss_pred EEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeee
Q 015438 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (407)
Q Consensus 185 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 264 (407)
++++.|++|++||..++...+.+.... .|+++..+++|++|.++ ..+.|.+||..+..+++.
T Consensus 159 LSSadd~tVRLWD~rTgt~v~sL~~~s-----------------~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs 220 (334)
T KOG0278|consen 159 LSSADDKTVRLWDHRTGTEVQSLEFNS-----------------PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKS 220 (334)
T ss_pred EeeccCCceEEEEeccCcEEEEEecCC-----------------CCcceeeccCCCEEEEe-cCceeEEeccccccceee
Confidence 999999999999999998876665433 79999999999876665 566799999999988887
Q ss_pred eeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeee-ccccCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 015438 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (407)
Q Consensus 265 ~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw 343 (407)
+. -...|.+...+ |+...+++|+.|..++.||.. ++..+..+ .+|.++|.++.|+|+|...++|++||+|++|
T Consensus 221 ~k-~P~nV~SASL~-P~k~~fVaGged~~~~kfDy~----TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 221 YK-MPCNVESASLH-PKKEFFVAGGEDFKVYKFDYN----TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred cc-Ccccccccccc-CCCceEEecCcceEEEEEecc----CCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 74 45678999998 556899999999999999998 88888886 8999999999999999999999999999999
Q ss_pred ECCCCCCc
Q 015438 344 DIRKMSSN 351 (407)
Q Consensus 344 d~~~~~~~ 351 (407)
.+...+..
T Consensus 295 Qt~~~~~~ 302 (334)
T KOG0278|consen 295 QTTPGKTY 302 (334)
T ss_pred EecCCCch
Confidence 98876553
No 89
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=8.3e-26 Score=185.38 Aligned_cols=231 Identities=15% Similarity=0.128 Sum_probs=179.3
Q ss_pred CCCceEEEEECC-CCCEEEEEeCCCeEEEEEcCCC-eEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 015438 123 TTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (407)
Q Consensus 123 h~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~ 200 (407)
-...|.+++||| ...++++++.||+||+|+++.. .... .....|.++|.+++|+.||..+++|+-|+.+++||+.+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 467899999999 5566778999999999999873 2222 34567888999999999999999999999999999999
Q ss_pred CceeccccccccccceeeeecCCCCccccEEEEEEeCCCC--EEEEeeCCCeEEEEEcCCCeeeeeeecc----------
Q 015438 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILAH---------- 268 (407)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------- 268 (407)
++...+. .|..+|.++.|-+... .|++|+.|.+|+.||++...++.++...
T Consensus 104 ~Q~~~v~-----------------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~ 166 (347)
T KOG0647|consen 104 GQVSQVA-----------------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY 166 (347)
T ss_pred CCeeeee-----------------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC
Confidence 9765544 3777999999988665 8999999999999999987766554311
Q ss_pred -------------------------------CCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccC
Q 015438 269 -------------------------------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317 (407)
Q Consensus 269 -------------------------------~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 317 (407)
.-.+.||+.. .+....+.|+-+|.+-|..+.... .+.-..++.|..
T Consensus 167 pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f-~d~~~~alGsiEGrv~iq~id~~~--~~~nFtFkCHR~ 243 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACF-QDKDGFALGSIEGRVAIQYIDDPN--PKDNFTFKCHRS 243 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEE-ecCCceEeeeecceEEEEecCCCC--ccCceeEEEecc
Confidence 1124566665 455555777778877777776221 134445666652
Q ss_pred ---------CeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCC
Q 015438 318 ---------GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (407)
Q Consensus 318 ---------~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 379 (407)
.|++|+|+|.-..|+|+|.||+..+||-.....+.+ ...+..+|++..|+.+|.+++-
T Consensus 244 ~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~----s~~~~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 244 TNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT----SETHPQPITCCSFNRNGSIFAY 310 (347)
T ss_pred CCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhc----cCcCCCccceeEecCCCCEEEE
Confidence 478899999999999999999999999887666544 4567788999999999988763
No 90
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=4.8e-26 Score=196.57 Aligned_cols=218 Identities=15% Similarity=0.214 Sum_probs=178.0
Q ss_pred CCcccccCCCceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCeE----EeEeeeccccceEEEEEEECC-CCCeEEEEeC
Q 015438 116 GPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSP-DQRHLVYASM 189 (407)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~ 189 (407)
....+.+|...-++++|++... .|++++.|+.|++||+..... +.......+|...|..++|+| +..++++++.
T Consensus 169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC
Confidence 3447889999999999999643 688999999999999875422 444556778999999999999 4567888999
Q ss_pred CCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeC-CCCEEEEeeCCCeEEEEEcCCC-eeeeeeec
Q 015438 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN-KLSLRILA 267 (407)
Q Consensus 190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~ 267 (407)
|+.+.|||++++ ...... ...+|...|+|++|+| ++..||+|+.|++|.+||++.. +++.++.+
T Consensus 249 d~~L~iwD~R~~-~~~~~~-------------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~ 314 (422)
T KOG0264|consen 249 DGKLMIWDTRSN-TSKPSH-------------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG 314 (422)
T ss_pred CCeEEEEEcCCC-CCCCcc-------------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC
Confidence 999999999974 211111 1225888999999999 5568899999999999999975 57788999
Q ss_pred cCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccC----------CCCceeeeeccccCCeEEEEecCCCCE-EEEEeC
Q 015438 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN----------VKGKPAGVLMGHLEGITFIDSRGDGRY-LISNGK 336 (407)
Q Consensus 268 ~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~----------~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~s~~~ 336 (407)
|...|.+|.|+|....+|++++.|+.+.|||+.... ....++..-.||...|..++|+|+..+ |++.++
T Consensus 315 H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae 394 (422)
T KOG0264|consen 315 HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE 394 (422)
T ss_pred CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC
Confidence 999999999999999999999999999999996321 123445667799999999999998765 667889
Q ss_pred CCcEEEEECCC
Q 015438 337 DQAIKLWDIRK 347 (407)
Q Consensus 337 dg~i~iwd~~~ 347 (407)
|+.+.||++..
T Consensus 395 DN~LqIW~~s~ 405 (422)
T KOG0264|consen 395 DNILQIWQMAE 405 (422)
T ss_pred CceEEEeeccc
Confidence 99999999874
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-25 Score=202.62 Aligned_cols=245 Identities=19% Similarity=0.255 Sum_probs=194.6
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccc
Q 015438 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (407)
Q Consensus 128 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 207 (407)
.-++|+ ..+.+|+| ....|++|+..++.... +... +...|+++.|+++|.+|++|..+|.|.|||....+....+
T Consensus 181 nlldWs-s~n~laVa-lg~~vylW~~~s~~v~~-l~~~--~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVA-LGQSVYLWSASSGSVTE-LCSF--GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred hHhhcc-cCCeEEEE-ecceEEEEecCCCceEE-eEec--CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc
Confidence 345788 44566666 45689999998885332 2222 2567999999999999999999999999999877654433
Q ss_pred cccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeee-eeccCCCeEEEEecCCCCCEEE
Q 015438 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDESGHLIY 286 (407)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~s~~~~~~l~ 286 (407)
.. .|...|.+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...|..++|+ +++++++
T Consensus 256 ~~---------------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-~d~~~lA 317 (484)
T KOG0305|consen 256 RG---------------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-PDGNQLA 317 (484)
T ss_pred cC---------------CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC-CCCCeec
Confidence 21 267789999998 66899999999999999998876665 88999999999998 9999999
Q ss_pred EEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecC-CCCEEEEEe--CCCcEEEEECCCCCCcccccCCCccccc
Q 015438 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (407)
Q Consensus 287 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (407)
+|+.|+.+.|||.. ...+...+..|...|.+++|+| ....||+|+ .|+.|++||..+++.+.... ...
T Consensus 318 SGgnDN~~~Iwd~~----~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-----tgs 388 (484)
T KOG0305|consen 318 SGGNDNVVFIWDGL----SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-----TGS 388 (484)
T ss_pred cCCCccceEeccCC----CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-----cCC
Confidence 99999999999997 7788899999999999999999 556788876 69999999999988876543 344
Q ss_pred cceeeeCCCCCCccCC--------------CCCcceEEEeCCccceeeEEEeeCCCC
Q 015438 364 DYRWMDYPPQARDLKH--------------PCDQSVATYKGHSVLRTLIRCHFSPVY 406 (407)
Q Consensus 364 ~v~~~~~~~~~~~l~~--------------~~~~~v~~~~gh~~~~~~~~~~fsp~~ 406 (407)
.|..+.|++..+-|++ +.-..+..+.||+. .|+.+.+|||+
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg 443 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDG 443 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCC
Confidence 5666667666543332 23334555568987 69999999996
No 92
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.2e-25 Score=173.72 Aligned_cols=246 Identities=21% Similarity=0.254 Sum_probs=185.1
Q ss_pred cccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCC--eEEeEeeeccccceEEEEEEECC----CCCeEEEEe-CCCe
Q 015438 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSP----DQRHLVYAS-MSPI 192 (407)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~-~dg~ 192 (407)
-..|.+.|+|.+|+|+|++|++|+.|..|++..+... ........+.-|.+.|..++|-. .+..|++++ .|..
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 3679999999999999999999999999999876542 22223344566888999999954 355666654 4566
Q ss_pred EEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeec-----
Q 015438 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA----- 267 (407)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----- 267 (407)
|++-|...++..... .||++-|.++ ++-++-++++|++|.+|++||++-..++..+..
T Consensus 165 iy~tdc~~g~~~~a~----------------sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~ 227 (350)
T KOG0641|consen 165 IYITDCGRGQGFHAL----------------SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG 227 (350)
T ss_pred EEEeecCCCCcceee----------------cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCC
Confidence 777777766543322 2577777665 344688999999999999999998888877641
Q ss_pred --cCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 015438 268 --HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (407)
Q Consensus 268 --~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~ 345 (407)
..+.|.++++. |.|++|++|-.|....+||+| .+.+++.+..|...|.++.|+|...||++++.|..|++-|+
T Consensus 228 glessavaav~vd-psgrll~sg~~dssc~lydir----g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 228 GLESSAVAAVAVD-PSGRLLASGHADSSCMLYDIR----GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred CcccceeEEEEEC-CCcceeeeccCCCceEEEEee----CCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence 23578999995 899999999999999999999 89999999999999999999999999999999999999998
Q ss_pred CCCC--Ccc-cccCCCccccccceeeeCCCCCCccCCCCCcceEEEe
Q 015438 346 RKMS--SNA-SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 389 (407)
Q Consensus 346 ~~~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~ 389 (407)
...- ++. .+...++ .-.|++-.-+.+-.++..+.|.++..|.
T Consensus 303 qgdla~el~~~vv~ehk--dk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 303 QGDLAHELPIMVVAEHK--DKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred ccchhhcCceEEEEecc--CceEEEEecCccceeeeccCcceEEEec
Confidence 7531 111 1111111 2223332233345777788888877774
No 93
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.1e-27 Score=196.91 Aligned_cols=269 Identities=12% Similarity=0.117 Sum_probs=213.4
Q ss_pred ceeeeeccCCCCcccccCCCceEEEEECCCC-CEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeE
Q 015438 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (407)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 184 (407)
..+.+++...-...+.+|...|.|++=+|.. ..+|+|+.||.|+|||+....+.. ....|.+.|..+++.. ..+
T Consensus 48 tKleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~~~ 122 (433)
T KOG0268|consen 48 TKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--TSF 122 (433)
T ss_pred HHHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--cce
Confidence 3344444444455679999999999999987 789999999999999998764443 4667888999999976 678
Q ss_pred EEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeee
Q 015438 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (407)
Q Consensus 185 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 264 (407)
++++.|.+|+.|.++.. ....+. ..+.+..+.-+..+..+++++++ |.|||..-..++..
T Consensus 123 ~tvgdDKtvK~wk~~~~-p~~til-----------------g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~s 182 (433)
T KOG0268|consen 123 FTVGDDKTVKQWKIDGP-PLHTIL-----------------GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSS 182 (433)
T ss_pred EEecCCcceeeeeccCC-cceeee-----------------ccccccccccccccccccccCce--eeecccccCCccce
Confidence 89999999999998763 111111 11245666666667788888764 99999998999999
Q ss_pred eeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEE
Q 015438 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (407)
Q Consensus 265 ~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd 344 (407)
+......|.++.|+|....+|++++.|+.|.+||+| ...++..+. ....-+.|+|+|.+--+++|++|..++.||
T Consensus 183 mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R----~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~D 257 (433)
T KOG0268|consen 183 MSWGADSISSVKFNPVETSILASCASDRSIVLYDLR----QASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYD 257 (433)
T ss_pred eecCCCceeEEecCCCcchheeeeccCCceEEEecc----cCCccceee-eeccccceecCccccceeeccccccceehh
Confidence 988888999999998888999999999999999999 777766553 234557899999888899999999999999
Q ss_pred CCCCCCcccccCCCccccccceeeeCCCCCCccCC-CCCcceEEEeC---Cccc-------eeeEEEeeCCCCC
Q 015438 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH-PCDQSVATYKG---HSVL-------RTLIRCHFSPVYR 407 (407)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~v~~~~g---h~~~-------~~~~~~~fsp~~~ 407 (407)
++..+..... +..+...+..++|+|.|+-+++ +.|.+|++|.. |+-. -.|..|.||-|.|
T Consensus 258 mR~l~~p~~v---~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 258 MRNLSRPLNV---HKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK 328 (433)
T ss_pred hhhhcccchh---hcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc
Confidence 9998876655 7778888999999999976655 56999999974 4311 2377888887754
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.2e-26 Score=205.51 Aligned_cols=259 Identities=15% Similarity=0.225 Sum_probs=208.8
Q ss_pred CcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEE-CCCCCeEEEEeCCCeEEE
Q 015438 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL-SPDQRHLVYASMSPIVHI 195 (407)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~~~dg~i~v 195 (407)
...++.|...|+.+....+|+.|++++.|-+|++|+...+. .........|...|.|++. .++...+|+|+.|+.|.+
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence 45678999999999999999999999999999999988763 2333456678889999999 888999999999999999
Q ss_pred EECCCCceeccccccccccceeeeecCCC-CccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEE
Q 015438 196 VDVGSGTMESLANVTEIHDGLDFSAADDG-GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (407)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 274 (407)
||++++....+..... ....... |+..+|.+++.++.|..|++|+..+.+++||.++++.+..+++|...|.+
T Consensus 145 WDin~~~~~l~~s~n~------~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ 218 (735)
T KOG0308|consen 145 WDINTGTATLVASFNN------VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRV 218 (735)
T ss_pred EEccCcchhhhhhccc------cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEE
Confidence 9999874311111111 1111122 67789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccc
Q 015438 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 275 i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (407)
+..+ ++|..+++++.||+|++||++ ..+++.++..|...|.++..+|+=..+.+|+.||.|..=|+++.....-
T Consensus 219 ll~~-dDGt~~ls~sSDgtIrlWdLg----qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tl- 292 (735)
T KOG0308|consen 219 LLVN-DDGTRLLSASSDGTIRLWDLG----QQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTL- 292 (735)
T ss_pred EEEc-CCCCeEeecCCCceEEeeecc----ccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheE-
Confidence 9998 899999999999999999998 8899999999999999999999999999999999999999999533222
Q ss_pred cCCCccccccceeeeCCCC-CCccCCCCCcceEEEeCC
Q 015438 355 NLGFRSYEWDYRWMDYPPQ-ARDLKHPCDQSVATYKGH 391 (407)
Q Consensus 355 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~v~~~~gh 391 (407)
......++..+....+ ..++....|..|+.|.+-
T Consensus 293 ---ick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 293 ---ICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ---eecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 1222333333333322 233555667777777654
No 95
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=196.98 Aligned_cols=258 Identities=19% Similarity=0.223 Sum_probs=194.7
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeE---------EeEeeeccccceEEEEEEECCC-CCeEEEEeCCCeE
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK---------IQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIV 193 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~i 193 (407)
...|.+++|++.|..|++.+.....+|+|-+.... +......++|...++|.+|+|+ ...+++++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 55899999999999999998889999999764322 1223345789999999999996 4578899999999
Q ss_pred EEEECCCCce-eccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCee---eeeeeccC
Q 015438 194 HIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAHT 269 (407)
Q Consensus 194 ~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~ 269 (407)
++||++..+. ..+ +.....++..-.++.++|+++|+.||+|..||.|.+|+...... +..-.+|.
T Consensus 294 RiWdv~~~k~q~qV-----------ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~ 362 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQV-----------IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHL 362 (641)
T ss_pred EEEecCCchhheeE-----------EeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccC
Confidence 9999986542 111 12222335566899999999999999999999999999865421 22233677
Q ss_pred C--CeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccC--CeEEEEecCCCCEEEEEeC------CCc
Q 015438 270 S--DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDGRYLISNGK------DQA 339 (407)
Q Consensus 270 ~--~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~s~~~------dg~ 339 (407)
. .|+||.|| .+|++|++-+.|+++++||+|. ..+++....+... +-+.++|||+.++|+||+. .|.
T Consensus 363 ~g~~Itsi~FS-~dg~~LlSRg~D~tLKvWDLrq---~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 363 PGQDITSISFS-YDGNYLLSRGFDDTLKVWDLRQ---FKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGT 438 (641)
T ss_pred CCCceeEEEec-cccchhhhccCCCceeeeeccc---cccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCce
Confidence 6 89999998 9999999999999999999994 4566666665433 4578999999999999873 578
Q ss_pred EEEEECCCCCCcccccCCCccccccceeeeCCCC-CCccCCCCCcceEEEe-CCccceeeEEE
Q 015438 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ-ARDLKHPCDQSVATYK-GHSVLRTLIRC 400 (407)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~v~~~~-gh~~~~~~~~~ 400 (407)
+.+||-.+...++.+.. ....|..+.++|. +++++...|+.+++|- -|...|.+..|
T Consensus 439 L~f~d~~t~d~v~ki~i----~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S~RGak~c 497 (641)
T KOG0772|consen 439 LFFFDRMTLDTVYKIDI----STASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNESIRGAKLC 497 (641)
T ss_pred EEEEeccceeeEEEecC----CCceEEEEeecchhhheeeecCCCceEEEECccccccchhhe
Confidence 99999999888776532 2445555666776 4666777778887764 44445554444
No 96
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.2e-25 Score=182.99 Aligned_cols=271 Identities=17% Similarity=0.221 Sum_probs=197.7
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceecc
Q 015438 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (407)
Q Consensus 127 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~ 206 (407)
..|+.|++.|.+||+|+.||.|.|||+.+.. +.. ....|..+|++++||++|+.|++++.|..|.+||+..+.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar--~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IAR--MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhh--hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 7899999999999999999999999998853 222 3567888999999999999999999999999999999887554
Q ss_pred ccccccccceeeeec------------------------------CCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEc
Q 015438 207 ANVTEIHDGLDFSAA------------------------------DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (407)
Q Consensus 207 ~~~~~~~~~~~~~~~------------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 256 (407)
+.+....-+..+-+. .++.......+..|.+.|++|++|...|.+.++|.
T Consensus 103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 443322211111000 00111112223458889999999999999999999
Q ss_pred CCCeeeeeeeccC-CCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCC-----Cceeeeecc--ccCCeEEEEecCCC
Q 015438 257 EANKLSLRILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMG--HLEGITFIDSRGDG 328 (407)
Q Consensus 257 ~~~~~~~~~~~~~-~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~-----~~~~~~~~~--~~~~i~~~~~s~~~ 328 (407)
.+.+++..++... ..|..|.++ ..|..|+.-+.|..||.|+++..... ..+.+.+.. ....-.+++|+.+|
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred chheeeeeeeechheeeeEEEEe-ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 9999998887666 789999997 89999999999999999998732211 111122221 12234678899999
Q ss_pred CEEEEEe-CCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCCcceEEEeCCccceeeEEEeeCCCCC
Q 015438 329 RYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYR 407 (407)
Q Consensus 329 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh~~~~~~~~~~fsp~~~ 407 (407)
.|+++++ ....++||.-..+..+..+....+....+| .+.|-..++++-..+.+.+|.-....++ ..|.||||
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV---~whp~rp~i~si~sg~v~iw~~~~~enw---safAPdFq 335 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDV---NWHPVRPIIASIASGVVYIWAVVQVENW---SAFAPDFQ 335 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeecCCchhheeec---ccccceeeeeeccCCceEEEEeecccch---hhcCchHH
Confidence 9998877 456799999998887766533222333344 4455555666667889999976654444 78999885
No 97
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.1e-25 Score=205.31 Aligned_cols=207 Identities=17% Similarity=0.220 Sum_probs=171.5
Q ss_pred CCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC-CCCeEEEEeCCCeE
Q 015438 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIV 193 (407)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~i 193 (407)
++...+.||.+.|..+.||.+ .+|++++.|.+|++|++....++... .|..-|+|++|+| |.+++++|+.|+.|
T Consensus 360 kP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F----~HndfVTcVaFnPvDDryFiSGSLD~Kv 434 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF----SHNDFVTCVAFNPVDDRYFISGSLDGKV 434 (712)
T ss_pred cchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE----ecCCeeEEEEecccCCCcEeecccccce
Confidence 344466899999999999976 57889999999999999987666542 4677899999999 88999999999999
Q ss_pred EEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeec--c---
Q 015438 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA--H--- 268 (407)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~--- 268 (407)
+||++...+......+. .-|++++|.|||+..++|+.+|.+++|+....+....... +
T Consensus 435 RiWsI~d~~Vv~W~Dl~-----------------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 435 RLWSISDKKVVDWNDLR-----------------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred EEeecCcCeeEeehhhh-----------------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 99999877654333222 2599999999999999999999999999998776544321 1
Q ss_pred ---CCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccC--CeEEEEecCCCCEEEEEeCCCcEEEE
Q 015438 269 ---TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDGRYLISNGKDQAIKLW 343 (407)
Q Consensus 269 ---~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~s~~~dg~i~iw 343 (407)
...|+.+.|.|.+...+++.+.|..|||||.+ +..++..++|+.. .-....|+.||++|+++++|..|++|
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~----~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGR----DKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEecc----chhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 22799999998887778888999999999998 7788888887644 23566799999999999999999999
Q ss_pred ECCC
Q 015438 344 DIRK 347 (407)
Q Consensus 344 d~~~ 347 (407)
++..
T Consensus 574 ~~~~ 577 (712)
T KOG0283|consen 574 KNDS 577 (712)
T ss_pred eCCC
Confidence 9744
No 98
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.9e-25 Score=183.88 Aligned_cols=249 Identities=18% Similarity=0.235 Sum_probs=200.9
Q ss_pred ccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 015438 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~ 198 (407)
.+-.|..+|+++.|+|....|++|+.|++|+++|+.......... .-....+|.++.|+|.|.+|++|..-..+++||+
T Consensus 167 TlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K-~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv 245 (430)
T KOG0640|consen 167 TLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFK-VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDV 245 (430)
T ss_pred ehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHH-HhhccceeeeEeecCCCceEEEecCCCceeEEec
Confidence 566899999999999999999999999999999987531111111 1122347999999999999999999999999999
Q ss_pred CCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeee-ccC-CCeEEEE
Q 015438 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHT-SDVNTVC 276 (407)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~-~~v~~i~ 276 (407)
++-++....+ +..+|++.|+++.+++.|++.++|+.||.|++||--+++++.++. +|. ..|.+..
T Consensus 246 ~T~Qcfvsan-------------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~ 312 (430)
T KOG0640|consen 246 NTYQCFVSAN-------------PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAV 312 (430)
T ss_pred cceeEeeecC-------------cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEE
Confidence 9887643322 445788999999999999999999999999999999999988875 454 4688899
Q ss_pred ecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccC-----CeEEEEecCCCCEEEEEeC-CCcEEEEECCCCCC
Q 015438 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-----GITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSS 350 (407)
Q Consensus 277 ~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-----~i~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~ 350 (407)
|. .+++++++++.|..+++|.+. ++.++..+.|-.. --+...|+....|++.-.+ .+.+.-||-++...
T Consensus 313 Ft-kn~kyiLsSG~DS~vkLWEi~----t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr 387 (430)
T KOG0640|consen 313 FT-KNGKYILSSGKDSTVKLWEIS----TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR 387 (430)
T ss_pred Ec-cCCeEEeecCCcceeeeeeec----CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh
Confidence 97 999999999999999999998 8899988876421 2345568888888877664 67899999999766
Q ss_pred cccccCCCccccccceeeeCCCCC-CccCCCCCcceEEEe
Q 015438 351 NASCNLGFRSYEWDYRWMDYPPQA-RDLKHPCDQSVATYK 389 (407)
Q Consensus 351 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~v~~~~ 389 (407)
+... ...+...++|+.-+|.+ -++.++.|...+-|.
T Consensus 388 ~~l~---slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 388 VALL---SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred hhhc---ccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 5544 45677889999999987 555677777777774
No 99
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=203.23 Aligned_cols=235 Identities=22% Similarity=0.265 Sum_probs=195.5
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 015438 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (407)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~ 202 (407)
+...+.+..|. ..++++++.++.|++|+..++..+.. ...+|.+.|.++++..-+.+|++|+.|.++++||+.+++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence 67788888898 56799999999999999998754443 367899999999998778899999999999999999999
Q ss_pred eeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCC
Q 015438 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282 (407)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~ 282 (407)
+...+. +|...|.++... ..++++|+.|.+|++|++.++..+..+.+|.++|.++..+ +
T Consensus 283 C~~~l~----------------gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~ 341 (537)
T KOG0274|consen 283 CTHSLQ----------------GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---E 341 (537)
T ss_pred EEEEec----------------CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---C
Confidence 877664 577788888775 4478889999999999999999999998899999999995 7
Q ss_pred CEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCC-CCcccccCCCccc
Q 015438 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM-SSNASCNLGFRSY 361 (407)
Q Consensus 283 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~ 361 (407)
.++++|+.|++|++||++ .++++..+.+|...|+++.+.+. ..+++|+.|++|++||+++. ++..++.. +
T Consensus 342 ~~lvsgs~d~~v~VW~~~----~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~----h 412 (537)
T KOG0274|consen 342 PLLVSGSYDGTVKVWDPR----TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG----H 412 (537)
T ss_pred CEEEEEecCceEEEEEhh----hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC----C
Confidence 899999999999999999 99999999999999999988655 89999999999999999999 66655422 2
Q ss_pred cccceeeeCCCCCCccCCCCCcceEEEeCCc
Q 015438 362 EWDYRWMDYPPQARDLKHPCDQSVATYKGHS 392 (407)
Q Consensus 362 ~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh~ 392 (407)
..-+..+. .-+..+++...|+.|++|+...
T Consensus 413 ~~~v~~l~-~~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 413 TSLVSSLL-LRDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred cccccccc-cccceeEeccccccEEEeeccc
Confidence 22221111 1234666677788899987554
No 100
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.9e-25 Score=189.95 Aligned_cols=233 Identities=16% Similarity=0.189 Sum_probs=189.3
Q ss_pred ccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 015438 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (407)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~ 200 (407)
.+|...|.+++.|+||++||+|+.|..|.||+.++...+. ...+|.+.|.+++|-.....|++++.|..|++|+++.
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence 4899999999999999999999999999999999975554 3678999999999998888999999999999999987
Q ss_pred CceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCC
Q 015438 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (407)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~ 280 (407)
......+ .||+..|..|....-++.+-+|+.|+++++|++.... ...+.++.+.+.|++|-
T Consensus 276 ~s~vetl----------------yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~I-- 336 (479)
T KOG0299|consen 276 LSYVETL----------------YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFI-- 336 (479)
T ss_pred hHHHHHH----------------hCCccceeeechhcccceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEe--
Confidence 6544332 2688899999988888888888899999999995443 34566889999999995
Q ss_pred CCCEEEEEeCCCcEEEEeCcccCCCCceeeeec-cc-----------cCCeEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 015438 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GH-----------LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (407)
Q Consensus 281 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~-----------~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 348 (407)
+...|++|+.+|.|.+|++- +.+++.+.. +| ..+|++++..|...++++|+.+|.|++|-+..+
T Consensus 337 n~~HfvsGSdnG~IaLWs~~----KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 337 NDEHFVSGSDNGSIALWSLL----KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cccceeeccCCceEEEeeec----ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 56678999999999999997 667766543 22 237999999999999999999999999999876
Q ss_pred CCcccccCCCccccccceeeeCCCCCCccCCC
Q 015438 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380 (407)
Q Consensus 349 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 380 (407)
-....... .-....-|+.+.|+++|+.+.++
T Consensus 413 ~r~i~~l~-~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 413 LRAINLLY-SLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccceee-ecccccEEEEEEEccCCCEEEEe
Confidence 33222211 11244557888999999855443
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-24 Score=178.70 Aligned_cols=292 Identities=16% Similarity=0.169 Sum_probs=228.1
Q ss_pred ccchhhhccCccCccCCC--------ceeccccccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEE
Q 015438 79 PVSTVKMLAGREGNYSGR--------GRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRI 150 (407)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~i 150 (407)
....++.+.||..++-.. ..-.+++....+|.+-...+.....+|.+.|++++|++.+.++++++.|++-.|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 345567788887776311 112456777788888888888899999999999999999999999999999999
Q ss_pred EEc------CC-----C-------------------------eEE-eEeeeccccceEEEEEEECCCCCeEEEEeCCCeE
Q 015438 151 YDV------ER-----G-------------------------WKI-QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (407)
Q Consensus 151 wd~------~~-----~-------------------------~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i 193 (407)
|.. .. + -.+ .....+.+|...|.+..|-..++.+++++.|.+.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 972 11 0 011 1223456788899999999999999999999999
Q ss_pred EEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC-eeeeeeeccCCCe
Q 015438 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDV 272 (407)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v 272 (407)
.+||+++++....+. ||....+.++-+|..+++++.+.|.+.++||++.. ..+..|.+|...|
T Consensus 297 nlwDVEtge~v~~Lt----------------GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtV 360 (481)
T KOG0300|consen 297 NLWDVETGEVVNILT----------------GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTV 360 (481)
T ss_pred eeeeeccCceecccc----------------CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccce
Confidence 999999998765543 67778999999999999999999999999999843 4567789999999
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcc
Q 015438 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (407)
Q Consensus 273 ~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (407)
+++.|. .+..+++|+.|.+|++||+++ ...++.++. ..++++.++.+..+..|+.--.+..|++||++......
T Consensus 361 TS~vF~--~dd~vVSgSDDrTvKvWdLrN---MRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR 434 (481)
T KOG0300|consen 361 TSVVFN--TDDRVVSGSDDRTVKVWDLRN---MRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR 434 (481)
T ss_pred eEEEEe--cCCceeecCCCceEEEeeecc---ccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCcccc
Confidence 999996 455688999999999999994 345666665 45789999999888888888888899999998654432
Q ss_pred cccCCCccccccceeeeC---CCCCCccCCCCCcceEEEeCCc
Q 015438 353 SCNLGFRSYEWDYRWMDY---PPQARDLKHPCDQSVATYKGHS 392 (407)
Q Consensus 353 ~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~~~v~~~~gh~ 392 (407)
.-.....++.--+++.++ +|-..++.++-|+.+.-|+-..
T Consensus 435 lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 435 LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred CCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 222223344445555555 5667889999999998887554
No 102
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=9.9e-27 Score=211.05 Aligned_cols=242 Identities=17% Similarity=0.258 Sum_probs=212.4
Q ss_pred cccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEE
Q 015438 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd 197 (407)
+.+..|...|.++..-..++.+++|+.|..+-+|.+..-..+ ..+.+|..+|.++.|+++..+|++|+.+|+|++||
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i---~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI---TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh---heeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence 345678889999998778899999999999999998764333 34678999999999999999999999999999999
Q ss_pred CCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEe
Q 015438 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (407)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 277 (407)
++.......+ .+|...+.++.|+|.+.+++.|+.|+.+.+||.+..-+...+.+|...|..+.|
T Consensus 99 leeAk~vrtL----------------tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~l 162 (825)
T KOG0267|consen 99 LEEAKIVRTL----------------TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRL 162 (825)
T ss_pred hhhhhhhhhh----------------hccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEee
Confidence 9977654422 257778999999999999999999999999999988899999999999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCC
Q 015438 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (407)
Q Consensus 278 s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (407)
+ |+|.+++.|+.|..++|||+. .++.+..|..|.+.+..+.|+|..-.+++|+.|++|++||+++++.+..
T Consensus 163 s-P~Gr~v~~g~ed~tvki~d~~----agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s---- 233 (825)
T KOG0267|consen 163 S-PDGRWVASGGEDNTVKIWDLT----AGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS---- 233 (825)
T ss_pred c-CCCceeeccCCcceeeeeccc----ccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec----
Confidence 8 899999999999999999998 8999999999999999999999999999999999999999998776554
Q ss_pred CccccccceeeeCCCCCCccCCCCCcceEE
Q 015438 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVAT 387 (407)
Q Consensus 358 ~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~ 387 (407)
.+.....+++..|+|+++.+.++....+.+
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~q~sl~~ 263 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGEQISLSE 263 (825)
T ss_pred cCCccCCceeeeecCCceeeecCchhhhhh
Confidence 334477899999999999999887766654
No 103
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.1e-25 Score=190.98 Aligned_cols=314 Identities=17% Similarity=0.238 Sum_probs=233.0
Q ss_pred CCCchhHHHHHhhhhccCCccccccc-cCCCCCcccchhhhccCccCccCCCceeccccccceeeeeccCCCCcccccCC
Q 015438 46 PLSALDHEIAQLTKLKSEPKEHFSKE-VPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTT 124 (407)
Q Consensus 46 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 124 (407)
....|+.....+.+++....+.+... ...-.++|..++.+.+| +.+..++...+...- ...+-+.--.
T Consensus 189 ~s~~Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG----~d~~lrifqvDGk~N-------~~lqS~~l~~ 257 (514)
T KOG2055|consen 189 RSKLLPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAG----LDGTLRIFQVDGKVN-------PKLQSIHLEK 257 (514)
T ss_pred ccccCCCceeeeEeecccccCCcCcCCceEEEecCCCceEEEec----CCCcEEEEEecCccC-------hhheeeeecc
Confidence 33445555555555555555544433 23344566666655555 344444444332210 0111122236
Q ss_pred CceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCeEEeEeeecccc-ceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 015438 125 SRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (407)
Q Consensus 125 ~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~ 202 (407)
.+|.+++|+|+|. .+++++....++.||+.+.+.. +.....++ ...+..+..+|++++|+..+..|.|++....+++
T Consensus 258 fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e 336 (514)
T KOG2055|consen 258 FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE 336 (514)
T ss_pred CccceeeecCCCceEEEecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh
Confidence 7999999999999 8999999999999999887432 22222222 3357788999999999999999999999999998
Q ss_pred eeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCe--EEEEecCC
Q 015438 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV--NTVCFGDE 280 (407)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v--~~i~~s~~ 280 (407)
.+..+++.. .|..++|+.+++.|++.+.+|.|++||+++.+++..+.. .+.| +++|.+ .
T Consensus 337 li~s~KieG-----------------~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S-~ 397 (514)
T KOG2055|consen 337 LITSFKIEG-----------------VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCIS-L 397 (514)
T ss_pred hhheeeecc-----------------EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeec-C
Confidence 877666443 689999999999999999999999999999999888864 3334 566776 7
Q ss_pred CCCEEEEEeCCCcEEEEeCccc--CCCCceeeeeccccCCeEEEEecCCCCEEEEEe--CCCcEEEEECCCCCCcccccC
Q 015438 281 SGHLIYSGSDDNLCKVWDRRCL--NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSSNASCNL 356 (407)
Q Consensus 281 ~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~ 356 (407)
++.+||+|+..|.|.|||..+- ....+|+..+......|++++|++|++.||.+| .+..+++-.+.+.+....+..
T Consensus 398 ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~ 477 (514)
T KOG2055|consen 398 NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT 477 (514)
T ss_pred CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC
Confidence 8999999999999999996521 235678888888889999999999999998887 478899999999877766655
Q ss_pred CCccccccceeeeCCCCCCccCCCC-CcceEEEeCC
Q 015438 357 GFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGH 391 (407)
Q Consensus 357 ~~~~~~~~v~~~~~~~~~~~l~~~~-~~~v~~~~gh 391 (407)
.......+++|+|+|.+.+++++. ++.+..|+-|
T Consensus 478 -~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 478 -SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred -CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 356667789999999999999886 5778888765
No 104
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.4e-25 Score=188.34 Aligned_cols=260 Identities=15% Similarity=0.161 Sum_probs=210.1
Q ss_pred cccccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC
Q 015438 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (407)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (407)
+.|....+|++......+.+..|.+.|..|++.. ..+++++.|.+|+.|.++.. .... +.. ...+..+.-+..
T Consensus 86 s~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~t-ilg---~s~~~gIdh~~~ 158 (433)
T KOG0268|consen 86 SCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHT-ILG---KSVYLGIDHHRK 158 (433)
T ss_pred ccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-ccee-eec---cccccccccccc
Confidence 3566677999999999999999999999999998 66888999999999998753 2222 222 224677777777
Q ss_pred CCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCC-EEEEeeCCCeEEEEEcCCC
Q 015438 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEAN 259 (407)
Q Consensus 181 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~ 259 (407)
+..++++|. .|.|||.....+...+.+.. ..|.++.|+|... .|+++..|+.|.+||++++
T Consensus 159 ~~~FaTcGe--~i~IWD~~R~~Pv~smswG~----------------Dti~svkfNpvETsILas~~sDrsIvLyD~R~~ 220 (433)
T KOG0268|consen 159 NSVFATCGE--QIDIWDEQRDNPVSSMSWGA----------------DSISSVKFNPVETSILASCASDRSIVLYDLRQA 220 (433)
T ss_pred cccccccCc--eeeecccccCCccceeecCC----------------CceeEEecCCCcchheeeeccCCceEEEecccC
Confidence 788888875 58999998776655444321 2689999999654 7788889999999999999
Q ss_pred eeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCc
Q 015438 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 339 (407)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~ 339 (407)
+++.++. ....-+.|+|+| ....|++|+.|..++.||+|. -..++....+|.+.|..++|+|.|+-|++||.|.+
T Consensus 221 ~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~---l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks 295 (433)
T KOG0268|consen 221 SPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRN---LSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS 295 (433)
T ss_pred Cccceee-eeccccceecCc-cccceeeccccccceehhhhh---hcccchhhcccceeEEEeccCCCcchhccccccce
Confidence 9988764 345667899996 788899999999999999994 45788899999999999999999999999999999
Q ss_pred EEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCC-CCcceEEEeCCcc
Q 015438 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYKGHSV 393 (407)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~gh~~ 393 (407)
|+||.++.+...... +...-..|.++.||-|.+++.++ +|..|+.|++...
T Consensus 296 IRIf~~~~~~SRdiY---htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 296 IRIFPVNHGHSRDIY---HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred EEEeecCCCcchhhh---hHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 999999998776665 33444567788999999887665 5688999998754
No 105
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.2e-24 Score=179.18 Aligned_cols=229 Identities=17% Similarity=0.204 Sum_probs=182.7
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCce
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~ 203 (407)
...|..+.|+|.+..|++++.||.+++|++.... ....-.|..++.+++|.+ ...+++|+.||.|+.+|++++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~----l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS----LKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh----hhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc
Confidence 5789999999999999999999999999998752 223345677999999976 56799999999999999998876
Q ss_pred eccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCC
Q 015438 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (407)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~ 283 (407)
..+. .|..+|.||.+++-...+++|+.|++|++||.+.......+. ....|.++..+ ++
T Consensus 88 ~~ig-----------------th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~---g~ 146 (323)
T KOG1036|consen 88 DQIG-----------------THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS---GN 146 (323)
T ss_pred eeec-----------------cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc---CC
Confidence 5443 366689999999988899999999999999999765555554 34478888764 77
Q ss_pred EEEEEeCCCcEEEEeCcccCCC------------------------------C--------------ceeeeeccccC--
Q 015438 284 LIYSGSDDNLCKVWDRRCLNVK------------------------------G--------------KPAGVLMGHLE-- 317 (407)
Q Consensus 284 ~l~s~~~d~~i~vwd~~~~~~~------------------------------~--------------~~~~~~~~~~~-- 317 (407)
.|+.|+.|..+.+||+|..... | .....++.|..
T Consensus 147 ~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~ 226 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSE 226 (323)
T ss_pred EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeeccc
Confidence 8899999999999999833200 0 11122334432
Q ss_pred -------CeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCC
Q 015438 318 -------GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 382 (407)
Q Consensus 318 -------~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 382 (407)
+|++++|+|-...|+||+.||.|.+||+.+.+.+..+ ......|..++|+.+|..|+.+++
T Consensus 227 ~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~----~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 227 KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL----AKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhc----cCCCCceEEEEeccCCCeEEEEec
Confidence 6999999999999999999999999999998877664 333667889999999999998754
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=188.02 Aligned_cols=222 Identities=19% Similarity=0.225 Sum_probs=180.9
Q ss_pred cCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCC
Q 015438 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (407)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~ 201 (407)
-..++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+.. ...|-..|+++.|+-|+.+|++|+.||.|.+|.+..-
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v---~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV---LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHH---HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee
Confidence 3468899999999999999998999999999999965543 4667788999999999999999999999999997532
Q ss_pred ceeccccccccccceeeeecCCCCccccEEEEEEeCCC--CEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecC
Q 015438 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG--RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (407)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~ 279 (407)
--.... ......+...+|+-+|+++...+.| .+|++++.|.++++||+..+..+.++ ..+..+.+++..
T Consensus 156 v~a~~~-------~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-~fp~si~av~lD- 226 (476)
T KOG0646|consen 156 VSADND-------HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-TFPSSIKAVALD- 226 (476)
T ss_pred cccccC-------CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-ecCCcceeEEEc-
Confidence 110000 0011122234688899999988754 58999999999999999999988887 467789999996
Q ss_pred CCCCEEEEEeCCCcEEEEeCcccC------------CCCceeeeeccccC--CeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 015438 280 ESGHLIYSGSDDNLCKVWDRRCLN------------VKGKPAGVLMGHLE--GITFIDSRGDGRYLISNGKDQAIKLWDI 345 (407)
Q Consensus 280 ~~~~~l~s~~~d~~i~vwd~~~~~------------~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~s~~~dg~i~iwd~ 345 (407)
|.+..+++|+.+|.|.+.++.... ..+..+..+.||.. .|++++.+-||..|++|+.||.|+|||+
T Consensus 227 pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 227 PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred ccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 888899999999999998875322 23455677889988 9999999999999999999999999999
Q ss_pred CCCCCccccc
Q 015438 346 RKMSSNASCN 355 (407)
Q Consensus 346 ~~~~~~~~~~ 355 (407)
.+.+++.+..
T Consensus 307 ~S~Q~iRtl~ 316 (476)
T KOG0646|consen 307 YSKQCIRTLQ 316 (476)
T ss_pred chHHHHHHHh
Confidence 9887766553
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.6e-24 Score=177.66 Aligned_cols=222 Identities=18% Similarity=0.227 Sum_probs=186.3
Q ss_pred ccccceeeeeccCCCCcccccCCCceEEEEECCCCC--EEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC
Q 015438 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS--LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (407)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 179 (407)
.|..+.+.++........+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+...- ......+.|.+.|+.++.+|
T Consensus 61 sDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W---~~~~slK~H~~~Vt~lsiHP 137 (362)
T KOG0294|consen 61 SDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW---ELLKSLKAHKGQVTDLSIHP 137 (362)
T ss_pred CCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe---EEeeeecccccccceeEecC
Confidence 556667778888888889999999999999999875 8999999999999998763 23335677888899999999
Q ss_pred CCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC
Q 015438 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (407)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 259 (407)
.+++-++.+.|+.++.||+-.++.....++.. .-..+.|+|.|.+++.+..++ |-+|-+.+.
T Consensus 138 S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-----------------~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A 199 (362)
T KOG0294|consen 138 SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-----------------KATLVSWSPQGDHFVVSGRNK-IDIYQLDNA 199 (362)
T ss_pred CCceEEEEcCCceeeeehhhcCccceeeccCC-----------------cceeeEEcCCCCEEEEEeccE-EEEEecccH
Confidence 99999999999999999999887655554432 234499999999999988775 999999888
Q ss_pred eeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEe--cCCCCEEEEEeCC
Q 015438 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS--RGDGRYLISNGKD 337 (407)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~s~~~d 337 (407)
+....+.. ...+.++.| .++..|++|+.|+.|++||.. ...+...+.+|...|-.+.+ .|++.+|+|++.|
T Consensus 200 ~v~~~i~~-~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~d----s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD 272 (362)
T KOG0294|consen 200 SVFREIEN-PKRILCATF--LDGSELLVGGDNEWISLKDTD----SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSD 272 (362)
T ss_pred hHhhhhhc-cccceeeee--cCCceEEEecCCceEEEeccC----CCccceeeecchhheeeeEEEecCCceEEEEeccC
Confidence 77666643 355777777 578889999999999999998 78999999999999999984 6788999999999
Q ss_pred CcEEEEECCCCCCc
Q 015438 338 QAIKLWDIRKMSSN 351 (407)
Q Consensus 338 g~i~iwd~~~~~~~ 351 (407)
|.|+|||++..+..
T Consensus 273 G~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 273 GFIKVWDIDMETKK 286 (362)
T ss_pred ceEEEEEccccccC
Confidence 99999999987443
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.6e-25 Score=199.73 Aligned_cols=217 Identities=19% Similarity=0.311 Sum_probs=176.9
Q ss_pred EEEEC-CCCCEEEEEeCCCeEEEEEcCCCeE---EeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCcee
Q 015438 129 VSQFS-ADGSLFVAGFQASQIRIYDVERGWK---IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (407)
Q Consensus 129 ~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~ 204 (407)
++..+ |.+++|++|+.||.|++|++..... .........|...|.++....+++.|++++.|-+|++|+...+...
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 44444 3567899999999999999865322 1123345678888999999999999999999999999999866421
Q ss_pred ccccccccccceeeeecCCCCccccEEEEEE-eCCCCEEEEeeCCCeEEEEEcCCCe--ee--------eeee-ccCCCe
Q 015438 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKF-STDGRELVAGSSDDCIYVYDLEANK--LS--------LRIL-AHTSDV 272 (407)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~--~~--------~~~~-~~~~~v 272 (407)
.... .+.|...|.|+++ .++...+|+|+-|+.|.+||+.++. .+ ..+. ++..+|
T Consensus 109 c~st--------------ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 109 CMST--------------IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred hHhh--------------hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 1111 1247779999999 7788899999999999999999772 22 2223 778899
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcc
Q 015438 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (407)
Q Consensus 273 ~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (407)
++++.+ +.+.+|++|+..+.|++||.+ .++.+..++||...|..+..++||+.+++++.||+|++||+...+++.
T Consensus 175 YSLA~N-~t~t~ivsGgtek~lr~wDpr----t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 175 YSLAMN-QTGTIIVSGGTEKDLRLWDPR----TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA 249 (735)
T ss_pred eeeecC-CcceEEEecCcccceEEeccc----cccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceee
Confidence 999998 788999999999999999999 889999999999999999999999999999999999999999999988
Q ss_pred cccCCCccccccc
Q 015438 353 SCNLGFRSYEWDY 365 (407)
Q Consensus 353 ~~~~~~~~~~~~v 365 (407)
++.. +....|..
T Consensus 250 T~~v-H~e~VWaL 261 (735)
T KOG0308|consen 250 TYIV-HKEGVWAL 261 (735)
T ss_pred eEEe-ccCceEEE
Confidence 8654 33345544
No 109
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=183.26 Aligned_cols=214 Identities=19% Similarity=0.280 Sum_probs=168.8
Q ss_pred ccCCCceEEEEECCCC--CEEEEEeCCCeEEEEEcCCC-------------eEEeEeeeccccceEEEEEEECCC-CCeE
Q 015438 121 DQTTSRAYVSQFSADG--SLFVAGFQASQIRIYDVERG-------------WKIQKDILAKSLRWTVTDTSLSPD-QRHL 184 (407)
Q Consensus 121 ~~h~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~-------------~~~~~~~~~~~~~~~v~~~~~sp~-~~~l 184 (407)
-.|.+.++-+.-++-+ .+.|+=+..|.|+||++... .....+....+|...=..++|||- ...|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 4678888888887765 45556677899999997431 112234456677778899999993 2347
Q ss_pred EEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCC---e
Q 015438 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEAN---K 260 (407)
Q Consensus 185 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~---~ 260 (407)
++|.--+.|++|...++.... ...+..+|+..|-.++|||.. ..|++|+.||+|+|||++.+ .
T Consensus 228 lsGDc~~~I~lw~~~~g~W~v-------------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKV-------------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred ccCccccceEeeeeccCceee-------------cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc
Confidence 777777889999988865422 112233588899999999965 48999999999999999988 3
Q ss_pred eeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCC-CCEEEEEeCCCc
Q 015438 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQA 339 (407)
Q Consensus 261 ~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~~dg~ 339 (407)
++. .++|.+.|+.|.|+ ....+|++|+.||+++|||+|..+ .++++..+.-|..+|+++.|+|. ...|+++|.|..
T Consensus 295 ~~~-~kAh~sDVNVISWn-r~~~lLasG~DdGt~~iwDLR~~~-~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q 371 (440)
T KOG0302|consen 295 AVS-TKAHNSDVNVISWN-RREPLLASGGDDGTLSIWDLRQFK-SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ 371 (440)
T ss_pred eeE-eeccCCceeeEEcc-CCcceeeecCCCceEEEEEhhhcc-CCCcceeEEeccCCeeEEEeccccCceEEeccCCCc
Confidence 333 37899999999998 555599999999999999999876 56899999999999999999995 467888899999
Q ss_pred EEEEECCCCCC
Q 015438 340 IKLWDIRKMSS 350 (407)
Q Consensus 340 i~iwd~~~~~~ 350 (407)
|.+||+.-...
T Consensus 372 itiWDlsvE~D 382 (440)
T KOG0302|consen 372 ITIWDLSVEAD 382 (440)
T ss_pred EEEEEeeccCC
Confidence 99999976544
No 110
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.2e-24 Score=199.11 Aligned_cols=247 Identities=16% Similarity=0.224 Sum_probs=189.8
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEE----eEeeeccccceEEEEEEECC-CCCeEEEEeCCCeEEEEEC
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDV 198 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~i~vwd~ 198 (407)
.....+|...++-..++.++. ..++||.+...... ............+.++.|.. +.++||+++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 456777888898888888865 56888876543111 11111111223466788875 5789999999999999999
Q ss_pred CCCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEe
Q 015438 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (407)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 277 (407)
............ ..|...++++.|++.. .+|++|++||+|++||++..+...++.+....|.+|+|
T Consensus 118 nk~~rnk~l~~f-------------~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~f 184 (839)
T KOG0269|consen 118 NKSIRNKLLTVF-------------NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKF 184 (839)
T ss_pred CccccchhhhHh-------------hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceee
Confidence 863222221111 1477799999999854 68999999999999999999888888888889999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCC
Q 015438 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (407)
Q Consensus 278 s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (407)
+|..++.|+++...|.+.+||+|. ..++...+.+|.++|.++.|+|++.+|||||.|+.|+|||+...+.....
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlRq---p~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~--- 258 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLRQ---PDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH--- 258 (839)
T ss_pred ccCCCceEEEecCCceEEEeeccC---chhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee---
Confidence 999999999999999999999993 56778889999999999999999999999999999999999976554432
Q ss_pred CccccccceeeeCCCCCCccCC----CCCcceEEEeC
Q 015438 358 FRSYEWDYRWMDYPPQARDLKH----PCDQSVATYKG 390 (407)
Q Consensus 358 ~~~~~~~v~~~~~~~~~~~l~~----~~~~~v~~~~g 390 (407)
.-....++..+.|-|..+.... ..|-.|.+|+-
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEee
Confidence 2245677888888887644432 24777888874
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.7e-24 Score=170.77 Aligned_cols=217 Identities=17% Similarity=0.236 Sum_probs=173.6
Q ss_pred CCCcccccCCCceEEEEECC--CCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC--CCeEEEEeCC
Q 015438 115 NGPWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMS 190 (407)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d 190 (407)
.....|.+|.++|+.++|.. -|.+||+++.||.|.||.-+++ ...+......|...|++++|.|. |-.|+.++.|
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence 34567899999999999988 7999999999999999998887 44444556678889999999995 6788999999
Q ss_pred CeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCC---C-----------CEEEEeeCCCeEEEEEc
Q 015438 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---G-----------RELVAGSSDDCIYVYDL 256 (407)
Q Consensus 191 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~-----------~~l~~~~~dg~i~i~d~ 256 (407)
|.|.|++.+....-....+ ...|...|++++|.|- | +.|++|+.|..|+||+.
T Consensus 126 G~vsvl~~~~~g~w~t~ki-------------~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~ 192 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGWTTSKI-------------VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKF 192 (299)
T ss_pred CcEEEEEEcCCCCccchhh-------------hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeec
Confidence 9999999876521111111 1247778999999995 4 56999999999999999
Q ss_pred CCCe--eeeeeeccCCCeEEEEecCCCC---CEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEE
Q 015438 257 EANK--LSLRILAHTSDVNTVCFGDESG---HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL 331 (407)
Q Consensus 257 ~~~~--~~~~~~~~~~~v~~i~~s~~~~---~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 331 (407)
..++ .-.+|.+|.+-|..++|+|..+ ..|++++.||++.||..+.. ........+......+..++|+..|+.|
T Consensus 193 ~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e-~e~wk~tll~~f~~~~w~vSWS~sGn~L 271 (299)
T KOG1332|consen 193 DSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE-YEPWKKTLLEEFPDVVWRVSWSLSGNIL 271 (299)
T ss_pred CCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc-cCcccccccccCCcceEEEEEeccccEE
Confidence 8763 3345889999999999997654 47999999999999988722 1222233344456789999999999999
Q ss_pred EEEeCCCcEEEEECC
Q 015438 332 ISNGKDQAIKLWDIR 346 (407)
Q Consensus 332 ~s~~~dg~i~iwd~~ 346 (407)
+.++.|+.|.+|.-+
T Consensus 272 aVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 272 AVSGGDNKVTLWKEN 286 (299)
T ss_pred EEecCCcEEEEEEeC
Confidence 999999999999744
No 112
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-23 Score=180.85 Aligned_cols=262 Identities=11% Similarity=0.144 Sum_probs=202.7
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCC-eEEEEeCCCeEEEEECCCCc
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGT 202 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~i~vwd~~~~~ 202 (407)
.+.|+++.|+|....+++++.|+.++||.++..... .+....-...+|.+..|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 689999999999999999999999999998754211 1112222345899999999999 88999999999999999988
Q ss_pred eeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCC
Q 015438 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282 (407)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~ 282 (407)
...+....... ...+.....++++++|+..+..|.|++....+++.+..++ -.+.|..++|+ .++
T Consensus 292 ~~k~~~~~g~e-------------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fs-Sds 356 (514)
T KOG2055|consen 292 VTKLKPPYGVE-------------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFS-SDS 356 (514)
T ss_pred cccccCCCCcc-------------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEe-cCC
Confidence 77665544322 1246678889999999999999999999999999988885 47889999998 888
Q ss_pred CEEEEEeCCCcEEEEeCcccCCCCceeeeeccccC-CeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCccc--ccCCCc
Q 015438 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS--CNLGFR 359 (407)
Q Consensus 283 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~ 359 (407)
+.|++++.+|.|.+||++ ...++..+....+ .-++++.+++|.|||+|+..|.|-|||.++.-.-.. -.....
T Consensus 357 k~l~~~~~~GeV~v~nl~----~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLR----QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred cEEEEEcCCceEEEEecC----CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence 999999999999999999 6677777763322 236778889999999999999999999765321111 011244
Q ss_pred cccccceeeeCCCCCCccCCCCC---cc--------eEEEeC----CccceeeEEEeeCCC
Q 015438 360 SYEWDYRWMDYPPQARDLKHPCD---QS--------VATYKG----HSVLRTLIRCHFSPV 405 (407)
Q Consensus 360 ~~~~~v~~~~~~~~~~~l~~~~~---~~--------v~~~~g----h~~~~~~~~~~fsp~ 405 (407)
.....|+.|.|+++..+|+.++. +. ..+|.. .+....+..+.|||-
T Consensus 433 NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~ 493 (514)
T KOG2055|consen 433 NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN 493 (514)
T ss_pred hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC
Confidence 56678999999999999997653 22 223332 334556888999994
No 113
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1.3e-23 Score=199.57 Aligned_cols=212 Identities=19% Similarity=0.256 Sum_probs=173.9
Q ss_pred CcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCC----------C-----eEEeEeeeccccceEEEEEEECCCC
Q 015438 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER----------G-----WKIQKDILAKSLRWTVTDTSLSPDQ 181 (407)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----------~-----~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (407)
......|.+.|.|+.|+|||++||+|+.|+.|.||.... | +.........+|...|.++.|+|++
T Consensus 62 l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~ 141 (942)
T KOG0973|consen 62 LCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD 141 (942)
T ss_pred heeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc
Confidence 445678999999999999999999999999999999772 0 1223444567799999999999999
Q ss_pred CeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCee
Q 015438 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (407)
Q Consensus 182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 261 (407)
.+|++++.|++|.||+..+.+....+. +|.+.|..+.|.|-|++||+-+.|++|++|++.+...
T Consensus 142 ~~lvS~s~DnsViiwn~~tF~~~~vl~----------------~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i 205 (942)
T KOG0973|consen 142 SLLVSVSLDNSVIIWNAKTFELLKVLR----------------GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI 205 (942)
T ss_pred cEEEEecccceEEEEccccceeeeeee----------------cccccccceEECCccCeeeeecCCceEEEEEccccee
Confidence 999999999999999999885544433 5788899999999999999999999999998654222
Q ss_pred e----------------------------------------------------eeeeccCCCeEEEEecCC-----C---
Q 015438 262 S----------------------------------------------------LRILAHTSDVNTVCFGDE-----S--- 281 (407)
Q Consensus 262 ~----------------------------------------------------~~~~~~~~~v~~i~~s~~-----~--- 281 (407)
. ..|-+|.+++.++.|+|. .
T Consensus 206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng 285 (942)
T KOG0973|consen 206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNG 285 (942)
T ss_pred eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccC
Confidence 1 123478999999999862 1
Q ss_pred ----CC----EEEEEeCCCcEEEEeCcccCCCCceeeeecc-ccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 015438 282 ----GH----LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (407)
Q Consensus 282 ----~~----~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 348 (407)
++ .+|+|+.|+.|.||... ..+|+..... ....|..++|+|||..|+++|.||+|.+..+...
T Consensus 286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~----~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 286 TSTQPNCYYCIAAVGSQDRSLSVWNTA----LPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CccCCCcceEEEEEecCCccEEEEecC----CCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 22 78899999999999986 5666655432 2457999999999999999999999999998753
No 114
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.5e-24 Score=198.44 Aligned_cols=236 Identities=15% Similarity=0.210 Sum_probs=174.6
Q ss_pred ceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC-CCeEEEEeCCCeEEEEECCCCce
Q 015438 126 RAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTM 203 (407)
Q Consensus 126 ~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~i~vwd~~~~~~ 203 (407)
.+..++|.. +.++||+++..|.|.+||+.....-..+..+..|...++++.|++. ..+|++|+.||.|++||++....
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 455667774 4678999999999999999763222333467889999999999984 56788999999999999997765
Q ss_pred eccccccccccceeeeecCCCCccccEEEEEEeC-CCCEEEEeeCCCeEEEEEcCCC-eeeeeeeccCCCeEEEEecCCC
Q 015438 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDES 281 (407)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~s~~~ 281 (407)
...+. +....|.+++|+| .+.+|+++...|.+.+||++.. ++...+.+|.++|.++.|+ |+
T Consensus 169 ~~t~~----------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwh-Pn 231 (839)
T KOG0269|consen 169 KSTFR----------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWH-PN 231 (839)
T ss_pred ccccc----------------ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeec-CC
Confidence 44433 2334799999999 5678999999999999999875 4677888999999999999 59
Q ss_pred CCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCC-EEEEEe--CCCcEEEEECCCCCCcccccCCC
Q 015438 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNG--KDQAIKLWDIRKMSSNASCNLGF 358 (407)
Q Consensus 282 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~ 358 (407)
+.+|||||.|+.|+|||.... ..+++.++. ...+|..+.|.|... .|++++ .|-.|+|||++..=.+... .
T Consensus 232 r~~lATGGRDK~vkiWd~t~~--~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t---~ 305 (839)
T KOG0269|consen 232 REWLATGGRDKMVKIWDMTDS--RAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT---F 305 (839)
T ss_pred CceeeecCCCccEEEEeccCC--CccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccccccee---e
Confidence 999999999999999999632 223333332 346899999999765 566666 4788999999975444433 2
Q ss_pred ccccccceeeeCCC--CCCccCCCCCcc
Q 015438 359 RSYEWDYRWMDYPP--QARDLKHPCDQS 384 (407)
Q Consensus 359 ~~~~~~v~~~~~~~--~~~~l~~~~~~~ 384 (407)
..+.-.++.+++.. ...++.++.|++
T Consensus 306 ~eH~~~vt~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 306 LEHTDSVTGIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred eccCccccceeccCCCceeeEeecCccH
Confidence 33333444444443 123344444444
No 115
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=1.3e-23 Score=181.62 Aligned_cols=261 Identities=16% Similarity=0.211 Sum_probs=196.7
Q ss_pred CcccccCCCceEEEEECCCC--CEEEEEeCCCeEEEEEcCCC-eEEeEeeeccccceEEEEEEECC-CCCeEEEEeCCCe
Q 015438 117 PWPVDQTTSRAYVSQFSADG--SLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPI 192 (407)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~ 192 (407)
..+..-+.++|++++|+|.. +++|+|...|+|-+||+.+. ...........|..+|.++.|+| +...+++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 34556789999999999965 47888999999999999532 22334456778889999999999 4568889999999
Q ss_pred EEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCee-eeeeeccCCC
Q 015438 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSD 271 (407)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~ 271 (407)
|++-|++......+..... ....+.++.|+.+...++.+..=|...+||++++.. ...+..|...
T Consensus 259 iR~~D~~~~i~e~v~s~~~--------------d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDT--------------DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred eeeeeecchhhHHHhhcCc--------------cceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence 9999999876655544321 222677889998888888887778999999998764 6677789999
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECC----C
Q 015438 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR----K 347 (407)
Q Consensus 272 v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~----~ 347 (407)
|..|+++|-...+|+|++.|++.+|||+|.......++.....|.-.|.+..|||.+-.|+|.+.|..|+|||.. .
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK 404 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc
Confidence 999999999999999999999999999997654444455566799999999999988889999999999999984 3
Q ss_pred CCCcccccCC--CccccccceeeeCCCCCCccCCCC-CcceEEEeCCc
Q 015438 348 MSSNASCNLG--FRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHS 392 (407)
Q Consensus 348 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-~~~v~~~~gh~ 392 (407)
.....++... ...+...+.+ .|.|+-.++.++. -+-|-+|++..
T Consensus 405 ~~p~~~I~Hn~~t~RwlT~fKA-~W~P~~~li~vg~~~r~IDv~~~~~ 451 (498)
T KOG4328|consen 405 DEPLGTIPHNNRTGRWLTPFKA-AWDPDYNLIVVGRYPRPIDVFDGNG 451 (498)
T ss_pred CCccceeeccCcccccccchhh-eeCCCccEEEEeccCcceeEEcCCC
Confidence 3333332211 2222333332 3566666665543 34466776543
No 116
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=8.5e-23 Score=188.48 Aligned_cols=291 Identities=17% Similarity=0.184 Sum_probs=222.3
Q ss_pred cCCCceeccccccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEE
Q 015438 93 YSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV 172 (407)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 172 (407)
|-........+....+|+.-..+....+.++...|+++.=+|-=..+|.|..+|.|.|+++..++.+... +...+.|
T Consensus 171 YLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF---k~d~g~V 247 (910)
T KOG1539|consen 171 YLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF---KQDWGRV 247 (910)
T ss_pred heeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE---Eccccce
Confidence 4444444445566778888888889999999999999999999999999999999999999998666543 2224689
Q ss_pred EEEEECCCCCeEEE-EeCCCeEEEEECCCCceeccccccc--cc------------------cceeeeecC---------
Q 015438 173 TDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTMESLANVTE--IH------------------DGLDFSAAD--------- 222 (407)
Q Consensus 173 ~~~~~sp~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~--~~------------------~~~~~~~~~--------- 222 (407)
++++|..||+.+++ |+..|.+.+||++..+......-.. .. +.+......
T Consensus 248 tslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~L 327 (910)
T KOG1539|consen 248 TSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLL 327 (910)
T ss_pred eEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhe
Confidence 99999999886655 5566999999998765433222000 00 000000000
Q ss_pred -----------------C--------------------------------------------------------------
Q 015438 223 -----------------D-------------------------------------------------------------- 223 (407)
Q Consensus 223 -----------------~-------------------------------------------------------------- 223 (407)
.
T Consensus 328 R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R 407 (910)
T KOG1539|consen 328 RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR 407 (910)
T ss_pred eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch
Confidence 0
Q ss_pred ---------------------------CC----------ccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeee-
Q 015438 224 ---------------------------GG----------YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI- 265 (407)
Q Consensus 224 ---------------------------~~----------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~- 265 (407)
+. ....+++++.++.|++.+.|+..|.|-+|++.+|-....+
T Consensus 408 E~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~ 487 (910)
T KOG1539|consen 408 EKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG 487 (910)
T ss_pred hhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc
Confidence 00 1246789999999999999999999999999999877777
Q ss_pred --eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccC-------------------------------------CCC
Q 015438 266 --LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-------------------------------------VKG 306 (407)
Q Consensus 266 --~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~-------------------------------------~~~ 306 (407)
..|.++|+.++.. ..++.+++++.+|.+++||..... .+.
T Consensus 488 ~~~ah~~~V~gla~D-~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~ 566 (910)
T KOG1539|consen 488 DSPAHKGEVTGLAVD-GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR 566 (910)
T ss_pred cCccccCceeEEEec-CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh
Confidence 5899999999994 888999999999999999986211 112
Q ss_pred ceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCC--Ccc
Q 015438 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC--DQS 384 (407)
Q Consensus 307 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~ 384 (407)
+.++.+.||...|++++|||||++|++++.|++|++||+.++..+..+ ....+...+.|+|+|.+|+... ..-
T Consensus 567 kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-----~vd~~~~sls~SPngD~LAT~Hvd~~g 641 (910)
T KOG1539|consen 567 KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-----LVDSPCTSLSFSPNGDFLATVHVDQNG 641 (910)
T ss_pred hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-----ecCCcceeeEECCCCCEEEEEEecCce
Confidence 344557789999999999999999999999999999999998886643 3455678899999999998653 355
Q ss_pred eEEEeCCc
Q 015438 385 VATYKGHS 392 (407)
Q Consensus 385 v~~~~gh~ 392 (407)
|.+|..-+
T Consensus 642 IylWsNks 649 (910)
T KOG1539|consen 642 IYLWSNKS 649 (910)
T ss_pred EEEEEchh
Confidence 77776544
No 117
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=7.6e-24 Score=184.98 Aligned_cols=245 Identities=18% Similarity=0.211 Sum_probs=190.3
Q ss_pred cCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCe---EEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 015438 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW---KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (407)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~ 198 (407)
.|..-|.++++|...+++++|+. |.|+|||+.... .+..+ ........|.++.+.|||+.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqL-dcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQL-DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccc-cccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 68889999999999999999975 889999996531 11111 11223446999999999999999999999999999
Q ss_pred CCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEec
Q 015438 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (407)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s 278 (407)
..........+.. -.-.+..++.+||.+..+++..||.|.|||+.....++.|.+|...+.||.++
T Consensus 495 AapTprikaelts--------------sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 495 AAPTPRIKAELTS--------------SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred cCCCcchhhhcCC--------------cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence 8765432222211 11156789999999999999999999999999999999999999999999998
Q ss_pred CCCCCEEEEEeCCCcEEEEeCcccC------------------------------------CCCceeeeeccccCCeEEE
Q 015438 279 DESGHLIYSGSDDNLCKVWDRRCLN------------------------------------VKGKPAGVLMGHLEGITFI 322 (407)
Q Consensus 279 ~~~~~~l~s~~~d~~i~vwd~~~~~------------------------------------~~~~~~~~~~~~~~~i~~~ 322 (407)
.+|..|.+|+-|++||.||+|... ..+.....+.-|.+-|.++
T Consensus 561 -~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSl 639 (705)
T KOG0639|consen 561 -KDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSL 639 (705)
T ss_pred -CCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEE
Confidence 899999999999999999998211 0111222344577889999
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCCc-ceEEE
Q 015438 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ-SVATY 388 (407)
Q Consensus 323 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~v~~~ 388 (407)
.|.+.|+++++.+.|+.+-.|...-+..+... ....+|.+...+-+.+++..++++ .-.+|
T Consensus 640 KFa~cGkwfvStGkDnlLnawrtPyGasiFqs-----kE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred EecccCceeeecCchhhhhhccCccccceeec-----cccCcceeeeeccCceEEEecCCCcceEEE
Confidence 99999999999999999999999988776543 234456667777788777766554 43444
No 118
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.8e-23 Score=169.75 Aligned_cols=243 Identities=14% Similarity=0.149 Sum_probs=185.5
Q ss_pred CCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCC--eEEEEeCCCeE
Q 015438 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYASMSPIV 193 (407)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~dg~i 193 (407)
+.+.+..|.++|++++.+ +.++|+|+.|.+|+|||+.+...+.. ...|.+.|+++.|.+... .|++|+.||.|
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~---ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGI---LLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcc---eeccccceEEEEecCCcchhheeeecCCCcE
Confidence 356788999999999996 89999999999999999988654443 345677899999999765 89999999999
Q ss_pred EEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeE
Q 015438 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 273 (407)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 273 (407)
.+|+.....+...++ +|.+.|+.++.+|.+++.++.+.|+.+++||+-.++.-..+.. ....+
T Consensus 110 ~iw~~~~W~~~~slK----------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at 172 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLK----------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKAT 172 (362)
T ss_pred EEEEcCCeEEeeeec----------------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcce
Confidence 999998776544333 5777899999999999999999999999999998876555432 33445
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCccc
Q 015438 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (407)
Q Consensus 274 ~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (407)
.+.|+ +.|.+++.++.+ .|-+|.+. .......+.. ...+.++.|- ++..|++|+.|+.|.+||-....+...
T Consensus 173 ~v~w~-~~Gd~F~v~~~~-~i~i~q~d----~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~ 244 (362)
T KOG0294|consen 173 LVSWS-PQGDHFVVSGRN-KIDIYQLD----NASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTE 244 (362)
T ss_pred eeEEc-CCCCEEEEEecc-EEEEEecc----cHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCcccee
Confidence 59998 778888777765 68999886 4444333322 2346666665 577899999999999999998666554
Q ss_pred ccCCCccccccceeeeC--CCCC-CccCCCCCcceEEEeCCc
Q 015438 354 CNLGFRSYEWDYRWMDY--PPQA-RDLKHPCDQSVATYKGHS 392 (407)
Q Consensus 354 ~~~~~~~~~~~v~~~~~--~~~~-~~l~~~~~~~v~~~~gh~ 392 (407)
+ ..|...|..+.+ .|++ .++++++|+.|++|+-.-
T Consensus 245 ~----~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 245 F----LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred e----ecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 3 334444444442 3444 455678899999998654
No 119
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.7e-22 Score=188.43 Aligned_cols=259 Identities=15% Similarity=0.207 Sum_probs=208.3
Q ss_pred ccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 015438 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (407)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~ 200 (407)
..|+..-+.++|.|+|.+|++++.||.|++|+......... ....+...|.+++- ++.+|++|+.+++|.+|.+.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~--ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE--TIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc--hhhccCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence 46888899999999999999999999999999765421111 11214556777665 566999999999999999988
Q ss_pred CceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCC
Q 015438 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (407)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~ 280 (407)
++...++.. .+.++.+++|+.+|+++|.|+.|-.|++.++.+......+++|.++|.++.|+ +
T Consensus 86 ~~~~~iL~R----------------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~-p 148 (933)
T KOG1274|consen 86 GEEDTILAR----------------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD-P 148 (933)
T ss_pred CCccceeee----------------eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc-C
Confidence 876544332 22379999999999999999999999999999999999999999999999997 8
Q ss_pred CCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccc--------cCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcc
Q 015438 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH--------LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (407)
Q Consensus 281 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (407)
.+++||+.+.||.|++||+. .+....++.+- ...+..++|+|+|..|+..+.|+.|++|+........
T Consensus 149 ~~~fLAvss~dG~v~iw~~~----~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f 224 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQ----DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF 224 (933)
T ss_pred CCCEEEEEecCceEEEEEcc----cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehe
Confidence 89999999999999999998 55555554432 3356789999998889999999999999999998877
Q ss_pred cccCCCccccccceeeeCCCCCCccCCC-CCcceEEEeCC-----ccceeeEEEeeCCCC
Q 015438 353 SCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYKGH-----SVLRTLIRCHFSPVY 406 (407)
Q Consensus 353 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~gh-----~~~~~~~~~~fsp~~ 406 (407)
.+....... .+..+.|+|.|.+|+.+ -++.|.+|+-. .-.+.|....|-|+.
T Consensus 225 ~Lr~~~~ss--~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 225 KLRDKLSSS--KFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNA 282 (933)
T ss_pred eeccccccc--ceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEEEecCCCC
Confidence 764433332 38899999999999766 58999999765 234566677787753
No 120
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.1e-22 Score=165.93 Aligned_cols=265 Identities=15% Similarity=0.095 Sum_probs=188.1
Q ss_pred ccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCC-eEEeEeeeccccceEEEEEEECC--CCCeEEEEeCCCeEEE
Q 015438 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHI 195 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~dg~i~v 195 (407)
+..+|..-|.++.|.+.|+++|+++.|++|+|||.++. ........-..|.+.|..+.|.+ -|+.+|+++.|+++.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 34678999999999999999999999999999996543 22333344567888999999965 5899999999999999
Q ss_pred EECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCC--CCEEEEeeCCCeEEEEEcCCC------eeeeeee-
Q 015438 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN------KLSLRIL- 266 (407)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~------~~~~~~~- 266 (407)
|.-........- ...............|++++|.|. |-.+++++.||.++||+.-.. .....+.
T Consensus 88 WEE~~~~~~~~~-------~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 88 WEEQEKSEEAHG-------RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred eeeccccccccc-------ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 986422111100 000111111234558999999994 568999999999999986543 2222232
Q ss_pred ------ccCCCeEEEEecCC--CCCEEEEEeCC-----CcEEEEeCcccCCCCceeeeeccccCCeEEEEecCC----CC
Q 015438 267 ------AHTSDVNTVCFGDE--SGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD----GR 329 (407)
Q Consensus 267 ------~~~~~v~~i~~s~~--~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----~~ 329 (407)
.+..+..|+.|+|. ...+|+.|+.+ +.++||...........+..+.+|..+|+.++|.|+ -.
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCcee
Confidence 35677889999843 34688888766 588999876333345567788899999999999995 35
Q ss_pred EEEEEeCCCcEEEEECCCCCC------------ccc----ccCCCccccccceeeeCCCCCCccCC-CCCcceEEEeCC
Q 015438 330 YLISNGKDQAIKLWDIRKMSS------------NAS----CNLGFRSYEWDYRWMDYPPQARDLKH-PCDQSVATYKGH 391 (407)
Q Consensus 330 ~l~s~~~dg~i~iwd~~~~~~------------~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~v~~~~gh 391 (407)
.||+++.|| |+||.++.... ... ....+..|...+-.+.|+-.|.+|++ ++|++|+.|+..
T Consensus 241 ~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 241 LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 789999999 99999984210 000 11224445555556777888887764 678999999865
No 121
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.4e-22 Score=184.11 Aligned_cols=276 Identities=19% Similarity=0.210 Sum_probs=201.1
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC-----------CCeEEEEeCCCeEE
Q 015438 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----------QRHLVYASMSPIVH 194 (407)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----------~~~l~~~~~dg~i~ 194 (407)
..-++.|++...+|.....|..++|||++.-.++.+......|...|+++.--|- ...+++++.|++|+
T Consensus 326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred ceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 3457889999999999999999999999886555555555556666777665441 23488999999999
Q ss_pred EEECCCCceecccccccccc---------------------ceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEE
Q 015438 195 IVDVGSGTMESLANVTEIHD---------------------GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV 253 (407)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 253 (407)
+|++.......+........ .++-......+....+.+++.+|+|++||+|...|++++
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRV 485 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEE
Confidence 99998633222211000000 000011111234568999999999999999999999999
Q ss_pred EEcCCCeeeeeeeccCCCeEEEEecCCC--CCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCC-------------
Q 015438 254 YDLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG------------- 318 (407)
Q Consensus 254 ~d~~~~~~~~~~~~~~~~v~~i~~s~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~------------- 318 (407)
||+...+.+..+.+|...|.|+.|+-+. .++|++++.|..|+|||+.. ...+++++.+|...
T Consensus 486 y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r---ny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 486 YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR---NYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc---ccchhhhhcccccceeEEEEeecCCce
Confidence 9999999999999999999999998442 46899999999999999862 23333444444433
Q ss_pred ------------------------------------eEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCcccc
Q 015438 319 ------------------------------------ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE 362 (407)
Q Consensus 319 ------------------------------------i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (407)
++.++..|..+++++++.|..|+|||+.++++...+.. ...+.
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg-s~~~e 641 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG-SRDHE 641 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc-cccCC
Confidence 44555566677899999999999999999999887754 44455
Q ss_pred ccceeeeCCCCCCccCCC-CCcceEEEe-----------CCccceeeEEEeeCCCCC
Q 015438 363 WDYRWMDYPPQARDLKHP-CDQSVATYK-----------GHSVLRTLIRCHFSPVYR 407 (407)
Q Consensus 363 ~~v~~~~~~~~~~~l~~~-~~~~v~~~~-----------gh~~~~~~~~~~fsp~~~ 407 (407)
.+.--+...|.|-+++.+ .|.++.+|+ ||+. -|..+-|+||-|
T Consensus 642 G~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE--~VTG~kF~nDCk 696 (1080)
T KOG1408|consen 642 GDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE--AVTGVKFLNDCK 696 (1080)
T ss_pred CceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch--heeeeeecccch
Confidence 556667778888777654 567777776 7876 677888888743
No 122
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=3.6e-22 Score=165.64 Aligned_cols=262 Identities=20% Similarity=0.271 Sum_probs=191.4
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCC----e---EEe---EeeeccccceEEEEEEEC-------CCCCeEEEEeC
Q 015438 127 AYVSQFSADGSLFVAGFQASQIRIYDVERG----W---KIQ---KDILAKSLRWTVTDTSLS-------PDQRHLVYASM 189 (407)
Q Consensus 127 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~---~~~---~~~~~~~~~~~v~~~~~s-------p~~~~l~~~~~ 189 (407)
...+.|||||..|++-+.|..+++|++... . ... ...........|...+|- |+..++++++.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 346789999999999999999999997532 0 000 001111223467777774 67889999999
Q ss_pred CCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEc-CCCee--ee-ee
Q 015438 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL-EANKL--SL-RI 265 (407)
Q Consensus 190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~--~~-~~ 265 (407)
+.-|++||.-+++...........+. -....+++|+|||.+|++| ...+|++||+ +.+.. +. ++
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de-----------~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDE-----------YTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHh-----------hhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence 99999999999987665544332211 1135689999999999977 4678999999 55431 11 11
Q ss_pred ----eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeC-CCcE
Q 015438 266 ----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAI 340 (407)
Q Consensus 266 ----~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-dg~i 340 (407)
.+..+-+.+++|+|.+...++.|+....+-||.-. ...++..+-+|.++|+.+.|.++|+.|++|+. |..|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~----~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD----GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecC----CCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 13467789999999999999999999988888776 77899999999999999999999999999984 8899
Q ss_pred EEEECCCCCCcccccCCCcc-ccccceeeeCCCCCCccCCC-CCcceEEEeCCccc----------eeeEEEeeCCC
Q 015438 341 KLWDIRKMSSNASCNLGFRS-YEWDYRWMDYPPQARDLKHP-CDQSVATYKGHSVL----------RTLIRCHFSPV 405 (407)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~gh~~~----------~~~~~~~fsp~ 405 (407)
.+||+|..+........+.. ....| .....|++++|+++ .++.|.+|+-..-. ..+..|.++|.
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceE-EEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcc
Confidence 99999987664433222222 23333 23557889999988 79999999854311 24566677774
No 123
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=7.9e-23 Score=185.17 Aligned_cols=237 Identities=16% Similarity=0.217 Sum_probs=194.2
Q ss_pred cccccCCCceEE-EEECC-CCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEE
Q 015438 118 WPVDQTTSRAYV-SQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (407)
Q Consensus 118 ~~~~~h~~~v~~-~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~v 195 (407)
..+.+|.+-|.+ +++-+ ++-.+++|+.|..|.+|.+.+..++. .+.+|...|.++....++. +++|+.|.++++
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~-~iSgSWD~Takv 126 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKV 126 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc-eEecccccceEE
Confidence 346677777777 88876 44469999999999999998875544 5788999999999777776 999999999999
Q ss_pred EECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEE
Q 015438 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (407)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 275 (407)
|....-... ..+|+..|.++..-|.+ .+++|+.|.+|++|.- ++.++++.+|.+.|..+
T Consensus 127 W~~~~l~~~------------------l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL 185 (745)
T KOG0301|consen 127 WRIGELVYS------------------LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGL 185 (745)
T ss_pred ecchhhhcc------------------cCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccchhheeee
Confidence 987533221 23688999999999988 7999999999999975 78889999999999999
Q ss_pred EecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCccccc
Q 015438 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (407)
Q Consensus 276 ~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (407)
++- + +.-|++++.||.|++|++ .+..+..+.+|..-|++++...++..++++++|++++||+.. .+.+.+.
T Consensus 186 ~vl-~-~~~flScsNDg~Ir~w~~-----~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~ 256 (745)
T KOG0301|consen 186 AVL-D-DSHFLSCSNDGSIRLWDL-----DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT 256 (745)
T ss_pred EEe-c-CCCeEeecCCceEEEEec-----cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe
Confidence 996 3 334779999999999999 689999999999999999988888999999999999999988 3333321
Q ss_pred CCCccccccceeeeCCCCCCccCCCCCcceEEEeCCc
Q 015438 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS 392 (407)
Q Consensus 356 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh~ 392 (407)
. .....|++ .+-++|.+++.++|+.|++|.-..
T Consensus 257 l-PttsiWsa---~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 257 L-PTTSIWSA---KVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred c-CccceEEE---EEeeCCCEEEeccCceEEEEEecc
Confidence 1 22345554 445789999999999999998664
No 124
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-22 Score=175.23 Aligned_cols=244 Identities=18% Similarity=0.197 Sum_probs=182.3
Q ss_pred EEEEECC-------CCCEEEEEeCCCeEEEEEcCCCeEEeE------------------eeeccccceEEEEEEECCC-C
Q 015438 128 YVSQFSA-------DGSLFVAGFQASQIRIYDVERGWKIQK------------------DILAKSLRWTVTDTSLSPD-Q 181 (407)
Q Consensus 128 ~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~------------------~~~~~~~~~~v~~~~~sp~-~ 181 (407)
.|++|.. -|+++|.|+.|..|.|||++-...+.. .....+|...|.+++|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666643 267999999999999999864322111 1112357777888888875 5
Q ss_pred CeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCC-CCEEEEeeCCCeEEEEEcCCCe
Q 015438 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK 260 (407)
Q Consensus 182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~ 260 (407)
+.||+|+.|.+|++||+.++++...+. .|...|.++.|+|. ..+|++|+.|++|.+.|++...
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~----------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~ 320 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSIT----------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS 320 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehh----------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCcc
Confidence 578899999999999999998866654 25568999999995 4689999999999999999644
Q ss_pred eeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCC-CCEEEEEeCCCc
Q 015438 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQA 339 (407)
Q Consensus 261 ~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~~dg~ 339 (407)
.....-.-.+.|..++|.|...+.+++++.||+|+-+|+|. .++++.++..|.++|.+|++++. ..+|+|++.|+.
T Consensus 321 ~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~---~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 321 NSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN---PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred ccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCC---CCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 33333345788999999988899999999999999999994 56999999999999999999874 467889999999
Q ss_pred EEEEECCCCCCcccccCCCccccccceeeeCCCCC-CccCCC-CCcceEEEeCCc
Q 015438 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-RDLKHP-CDQSVATYKGHS 392 (407)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~~~~v~~~~gh~ 392 (407)
|++|++............. ......++++.|+. ..++.+ ....+++|+--.
T Consensus 398 Vklw~~~~~~~~~v~~~~~--~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 398 VKLWKFDVDSPKSVKEHSF--KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred EEEEeecCCCCcccccccc--cccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 9999998655533321111 11125667777764 333333 344577776443
No 125
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=9.7e-22 Score=162.91 Aligned_cols=213 Identities=16% Similarity=0.206 Sum_probs=169.9
Q ss_pred eeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeC
Q 015438 110 RYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (407)
Q Consensus 110 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 189 (407)
.+...+-..-+.||...|..++.+|-+..+++++.|++|++||++..++........ -..++|.|+|-++|++..
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-----~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-----RPIAAFDPEGLIFALANG 160 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-----CcceeECCCCcEEEEecC
Confidence 444455566788999999999999999999999999999999999665444332221 234789999999999988
Q ss_pred CCeEEEEECCCCceec--cccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeec
Q 015438 190 SPIVHIVDVGSGTMES--LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (407)
Q Consensus 190 dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 267 (407)
...|++||++.-.... .+.+.. +...+.+.|.|+|||++|+.++..+.+++.|.-+|..+..+..
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~-------------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~ 227 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITD-------------NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG 227 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCC-------------CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee
Confidence 8899999998643322 222111 2334789999999999999999999999999999998888876
Q ss_pred cCCCe---EEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeecc-ccCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 015438 268 HTSDV---NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (407)
Q Consensus 268 ~~~~v---~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~dg~i~iw 343 (407)
+...- ...+|+ |+++++++|+.||+|.+|+++ ++..+..+.+ +.+++.++.|+|.-.++++++ ..+-+|
T Consensus 228 ~~~~~~~~~~a~ft-Pds~Fvl~gs~dg~i~vw~~~----tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 228 YPNAGNLPLSATFT-PDSKFVLSGSDDGTIHVWNLE----TGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred ccCCCCcceeEEEC-CCCcEEEEecCCCcEEEEEcC----CCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence 65443 567887 899999999999999999998 8999999998 688999999999776666654 567788
Q ss_pred ECCC
Q 015438 344 DIRK 347 (407)
Q Consensus 344 d~~~ 347 (407)
=...
T Consensus 301 ~p~~ 304 (311)
T KOG1446|consen 301 LPDE 304 (311)
T ss_pred eccc
Confidence 6543
No 126
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2.6e-24 Score=195.54 Aligned_cols=198 Identities=20% Similarity=0.274 Sum_probs=174.7
Q ss_pred CCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEE
Q 015438 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (407)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~v 195 (407)
...-+.+|.++|.++.|+++..+|++|+.+|+|++||++.++.++ .+.+|...+.++.|+|-+.+.+.|+.|+.+.+
T Consensus 62 ~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~i 138 (825)
T KOG0267|consen 62 AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGEFFASGSTDTDLKI 138 (825)
T ss_pred hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceEEecccccccccee
Confidence 334478999999999999999999999999999999999875554 45678788999999999999999999999999
Q ss_pred EECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEE
Q 015438 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (407)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 275 (407)
||.+...+..... +|...|.++.|+|+|++++.|++|.+++|||+..|+.+..|..|.+.+..+
T Consensus 139 wD~Rk~Gc~~~~~----------------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sl 202 (825)
T KOG0267|consen 139 WDIRKKGCSHTYK----------------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSL 202 (825)
T ss_pred hhhhccCceeeec----------------CCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccccccc
Confidence 9998665554432 466689999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCC
Q 015438 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (407)
Q Consensus 276 ~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d 337 (407)
.|+ +..-++++|+.|+++++||++ +...+........+|.+++|+|++..+++|...
T Consensus 203 e~h-p~e~Lla~Gs~d~tv~f~dle----tfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 203 EFH-PLEVLLAPGSSDRTVRFWDLE----TFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccC-chhhhhccCCCCceeeeeccc----eeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 998 778899999999999999998 667777777778899999999999988877654
No 127
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=2.7e-22 Score=181.73 Aligned_cols=241 Identities=16% Similarity=0.228 Sum_probs=190.8
Q ss_pred CcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEE-EEECC-CCCeEEEEeCCCeEE
Q 015438 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD-TSLSP-DQRHLVYASMSPIVH 194 (407)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~sp-~~~~l~~~~~dg~i~ 194 (407)
...+.+|...|..+++.+. ..+++++.||++++|+-..+.-+. .....++.+-|.. +++-+ ++-.+++|+.|..+.
T Consensus 7 s~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~-~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLE-THAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred EEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCccccc-ceecccCcceeeccceeccccCcceEeecccceEE
Confidence 4578899999999997754 478999999999999976543332 2234445555555 77765 444699999999999
Q ss_pred EEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEE
Q 015438 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (407)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 274 (407)
+|...+..+..++. ||...|.+++...++. +++||.|.++++|-. +++...+.+|...|.+
T Consensus 85 v~~~~~~~P~~~Lk----------------gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLK----------------GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWA 145 (745)
T ss_pred EEecCCCCchhhhh----------------ccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheee
Confidence 99998887655543 6888999999888887 999999999999976 4666678999999999
Q ss_pred EEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccc
Q 015438 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 275 i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (407)
++.- +.+ .++||+.|.+|++|.- ++.+.++.+|...|..+++-+++ .|++++.||.|++|++ ++..+.+.
T Consensus 146 v~~l-~e~-~~vTgsaDKtIklWk~------~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~ 215 (745)
T KOG0301|consen 146 VASL-PEN-TYVTGSADKTIKLWKG------GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEM 215 (745)
T ss_pred eeec-CCC-cEEeccCcceeeeccC------CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeee
Confidence 9987 444 7889999999999974 58889999999999999998764 4889999999999999 55555443
Q ss_pred cCCCccccccceeee-CCCCCCccCCCCCcceEEEeCCc
Q 015438 355 NLGFRSYEWDYRWMD-YPPQARDLKHPCDQSVATYKGHS 392 (407)
Q Consensus 355 ~~~~~~~~~~v~~~~-~~~~~~~l~~~~~~~v~~~~gh~ 392 (407)
.++..-+.+++ ..+++-+++++-|+++++|+...
T Consensus 216 ----~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e 250 (745)
T KOG0301|consen 216 ----HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE 250 (745)
T ss_pred ----eccceEEEEEEecCCCCeEEEecCCceEEEeecCc
Confidence 23333334444 67778888999999999999763
No 128
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.1e-21 Score=175.05 Aligned_cols=282 Identities=15% Similarity=0.163 Sum_probs=206.6
Q ss_pred eeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCC--eEEEE
Q 015438 110 RYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYA 187 (407)
Q Consensus 110 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~ 187 (407)
+.+|+.....+.+|++.|.++...|.|.+|++|+.||+|+||.+.+|.++....... .|.|++|+|.+. .||++
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~----~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS----EIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc----eeEEEEecCCCCceeEEEE
Confidence 456778888899999999999999999999999999999999999998887755433 599999999755 34444
Q ss_pred eCCCeEEEEECCCCceecc------cccc---ccccceeeeecC------------CCCccccEEEEEEeCCCCEEEEee
Q 015438 188 SMSPIVHIVDVGSGTMESL------ANVT---EIHDGLDFSAAD------------DGGYSFGIFSLKFSTDGRELVAGS 246 (407)
Q Consensus 188 ~~dg~i~vwd~~~~~~~~~------~~~~---~~~~~~~~~~~~------------~~~~~~~v~~~~~s~~~~~l~~~~ 246 (407)
. ...+.|.+..-|..+.. +... ............ .-.|...|..+.|+..|.||++..
T Consensus 462 ~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 462 V-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred e-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 3 34466665543321111 0000 000000000000 002455789999999999999875
Q ss_pred C---CCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEE
Q 015438 247 S---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (407)
Q Consensus 247 ~---dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~ 323 (407)
. ...|.|+++...+...-|....+.|.++.|+ +...+|++++ ...|+|||+. ....+..+....-.|..++
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FH-Ps~p~lfVaT-q~~vRiYdL~----kqelvKkL~tg~kwiS~ms 614 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFH-PSKPYLFVAT-QRSVRIYDLS----KQELVKKLLTGSKWISSMS 614 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEec-CCCceEEEEe-ccceEEEehh----HHHHHHHHhcCCeeeeeee
Confidence 5 3569999998777666676677889999999 4555565655 4589999997 6666777766667899999
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCC-cceEEEe-------------
Q 015438 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD-QSVATYK------------- 389 (407)
Q Consensus 324 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~v~~~~------------- 389 (407)
.+|.|.-|+.|+.|+.+..+|+.-....... ...+.-.++.|+|++.-.+++++.| +.+.+|.
T Consensus 615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~---lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpli 691 (733)
T KOG0650|consen 615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKT---LRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLI 691 (733)
T ss_pred ecCCCCeEEEecCCCeeEEEEcccCcchhHH---hhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCce
Confidence 9999999999999999999999977665543 5677788999999999989988765 6655554
Q ss_pred -------CCcc--ceeeEEEeeCCC
Q 015438 390 -------GHSV--LRTLIRCHFSPV 405 (407)
Q Consensus 390 -------gh~~--~~~~~~~~fsp~ 405 (407)
||.. ...|+.+.|+|.
T Consensus 692 VPlK~L~gH~~~~~~gVLd~~wHP~ 716 (733)
T KOG0650|consen 692 VPLKRLRGHEKTNDLGVLDTIWHPR 716 (733)
T ss_pred EeeeeccCceeecccceEeecccCC
Confidence 5643 234788899984
No 129
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.1e-23 Score=196.40 Aligned_cols=248 Identities=17% Similarity=0.241 Sum_probs=192.7
Q ss_pred CCceEEEEECCCCCE----EEEEeCCCeEEEEEcCC---CeEEeEeeeccccceEEEEEEECCCCC-eEEEEeCCCeEEE
Q 015438 124 TSRAYVSQFSADGSL----FVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHI 195 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~----l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~i~v 195 (407)
..+.+.++|.+.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++... +||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 567889999998876 88889999999999865 333444456678999999999999655 9999999999999
Q ss_pred EECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCCeeeeeeeccCC--Ce
Q 015438 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTS--DV 272 (407)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v 272 (407)
||+...+...... .......|.+++|+..- +.|++++.+|.+.|||++..+.+..+..+.+ .+
T Consensus 144 WDlnn~~tP~~~~--------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~ 209 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG--------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHC 209 (1049)
T ss_pred eccCCcCCCCCCC--------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccce
Confidence 9998754322211 01133479999999744 5789999999999999999988877765544 47
Q ss_pred EEEEecCCCCCEEEEEeCCC---cEEEEeCcccCCCCceeeeeccccCCeEEEEecCCC-CEEEEEeCCCcEEEEECCCC
Q 015438 273 NTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKM 348 (407)
Q Consensus 273 ~~i~~s~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~ 348 (407)
..+.|+|.....+++++.|. .|.+||+|. ...+++.+++|..+|.++.|++.+ ++|++++.|+.|.+|+.+++
T Consensus 210 S~l~WhP~~aTql~~As~dd~~PviqlWDlR~---assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 210 SVLAWHPDHATQLLVASGDDSAPVIQLWDLRF---ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred eeeeeCCCCceeeeeecCCCCCceeEeecccc---cCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 88999988888888887764 699999994 567888889999999999999866 89999999999999999999
Q ss_pred CCcccccCCCccccccceeeeCCCCC-CccCC-CCCcceEEEeCCc
Q 015438 349 SSNASCNLGFRSYEWDYRWMDYPPQA-RDLKH-PCDQSVATYKGHS 392 (407)
Q Consensus 349 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~-~~~~~v~~~~gh~ 392 (407)
+.+..+.. ...+.. .+.|+|.. .++++ .-++.|.+|.-++
T Consensus 287 Evl~~~p~-~~nW~f---dv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 287 EVLGELPA-QGNWCF---DVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred eEeeecCC-CCccee---eeeecCCCcchhhhheeccceeeeeeec
Confidence 98887643 222333 34555554 34444 4588899987554
No 130
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=2.1e-22 Score=175.77 Aligned_cols=223 Identities=15% Similarity=0.218 Sum_probs=180.2
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceec
Q 015438 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (407)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~ 205 (407)
.-.|++......++++|+..+.|+|||+... .++ ...++|...|+++.++....+||+++..|.|.|..+.++....
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-l~h--r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt 157 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAK-LIH--RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT 157 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHH-HHh--hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc
Confidence 4455555555689999999999999999853 222 2467888999999999999999999999999999998886544
Q ss_pred cccccccccceeeeecCCCCccccEEEEEEeCCCC-EEEEeeCCCeEEEEEcCCCeeeee-eeccCCCeEEEEecCCCCC
Q 015438 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDESGH 283 (407)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~s~~~~~ 283 (407)
.+.... ...|.-+.|+|..+ +|.+++.+|.|.+||+....++.. ...|..+...|+|+|.+..
T Consensus 158 ~f~~~s---------------gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~ 222 (673)
T KOG4378|consen 158 TFTIDS---------------GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEA 222 (673)
T ss_pred ceecCC---------------CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccc
Confidence 443221 12467899999776 567789999999999988777655 4589999999999999999
Q ss_pred EEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccc
Q 015438 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (407)
Q Consensus 284 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (407)
+|++.+.|..|.+||.+ .......+. ...+.+.++|.++|.+|++|+..|.|..||+|..+.+... ...+..
T Consensus 223 l~vsVG~Dkki~~yD~~----s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v---~sah~~ 294 (673)
T KOG4378|consen 223 LLVSVGYDKKINIYDIR----SQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV---RSAHDA 294 (673)
T ss_pred eEEEecccceEEEeecc----cccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceE---eeeccc
Confidence 99999999999999998 444444443 4567899999999999999999999999999998887766 555666
Q ss_pred cceeeeCCCCC
Q 015438 364 DYRWMDYPPQA 374 (407)
Q Consensus 364 ~v~~~~~~~~~ 374 (407)
.|++++|-+..
T Consensus 295 sVt~vafq~s~ 305 (673)
T KOG4378|consen 295 SVTRVAFQPSP 305 (673)
T ss_pred ceeEEEeeecc
Confidence 68888886553
No 131
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=8e-22 Score=166.69 Aligned_cols=214 Identities=15% Similarity=0.209 Sum_probs=164.9
Q ss_pred ccCCCCcccccCCCceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC-CCeEEEEeC
Q 015438 112 LPVNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASM 189 (407)
Q Consensus 112 ~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~ 189 (407)
...++...+.+|...=++++|||-.. .|++|..-+.|++|...++.-......+.+|...|-.++|||. ...|++|+-
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 34456678899999999999999432 3778878889999999887544444556679999999999995 567889999
Q ss_pred CCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCC---Ceeeeeee
Q 015438 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---NKLSLRIL 266 (407)
Q Consensus 190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~ 266 (407)
||+|+|||++.+........ ..|.+.|+.|.|+..-.+||+|+.||++.|||+++ ++++..++
T Consensus 279 DgsIrIWDiRs~~~~~~~~~--------------kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk 344 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVST--------------KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK 344 (440)
T ss_pred CceEEEEEecCCCccceeEe--------------eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE
Confidence 99999999998743322221 14677899999999888999999999999999986 46788999
Q ss_pred ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCC---------CC---ceeeeecccc--CCeEEEEecCCC-CEE
Q 015438 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV---------KG---KPAGVLMGHL--EGITFIDSRGDG-RYL 331 (407)
Q Consensus 267 ~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~---------~~---~~~~~~~~~~--~~i~~~~~s~~~-~~l 331 (407)
-|..+|++|.|+|.+...|++++.|.+|.+||+..... .+ -+-+.+.-|. ..+..+.|++.- -+|
T Consensus 345 ~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~l 424 (440)
T KOG0302|consen 345 YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLL 424 (440)
T ss_pred eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeE
Confidence 99999999999998899999999999999999862210 01 1111222342 246778898854 466
Q ss_pred EEEeCCCc
Q 015438 332 ISNGKDQA 339 (407)
Q Consensus 332 ~s~~~dg~ 339 (407)
++.+.||.
T Consensus 425 vsTa~dGf 432 (440)
T KOG0302|consen 425 VSTAIDGF 432 (440)
T ss_pred EEecccce
Confidence 77777774
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=8.2e-21 Score=177.35 Aligned_cols=240 Identities=15% Similarity=0.206 Sum_probs=182.2
Q ss_pred ccceeeeeccC-CCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCC
Q 015438 104 CCHMLSRYLPV-NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (407)
Q Consensus 104 ~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 182 (407)
.....|..... +.|..+..+...|.+++... .+|++|+.+++|.+|.+..+..-..+.. ..-++.+++|+.+|+
T Consensus 35 g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~~~~~iL~R---ftlp~r~~~v~g~g~ 109 (933)
T KOG1274|consen 35 GDIRKWKTNSDEEEPETIDISGELVSSIACYS--NHFLTGSEQNTVLRYKFPSGEEDTILAR---FTLPIRDLAVSGSGK 109 (933)
T ss_pred CceEEeecCCcccCCchhhccCceeEEEeecc--cceEEeeccceEEEeeCCCCCccceeee---eeccceEEEEecCCc
Confidence 33334444333 67777777888888888764 4899999999999999988743222212 223689999999999
Q ss_pred eEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeee
Q 015438 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (407)
Q Consensus 183 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 262 (407)
++|.|+.|-.|++.++.......... +|.++|.++.|+|++++||+.+.||.|++||+.++.+.
T Consensus 110 ~iaagsdD~~vK~~~~~D~s~~~~lr----------------gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 110 MIAAGSDDTAVKLLNLDDSSQEKVLR----------------GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred EEEeecCceeEEEEeccccchheeec----------------ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhh
Confidence 99999999999999998765544332 57889999999999999999999999999999998876
Q ss_pred eeeec--------cCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeecc--ccCCeEEEEecCCCCEEE
Q 015438 263 LRILA--------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLI 332 (407)
Q Consensus 263 ~~~~~--------~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~ 332 (407)
..+.+ ....+..++|+|..| .|+..+.|+.|++|+.. .......+.. +...+..++|+|+|.|||
T Consensus 174 ~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~----~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 174 KTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRK----GWELQFKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred hhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccC----CceeheeecccccccceEEEEEcCCCcEEe
Confidence 66542 134567899995545 55566778999999997 6666666553 445589999999999999
Q ss_pred EEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCcc
Q 015438 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 377 (407)
Q Consensus 333 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 377 (407)
+++.||.|.|||+.+... ......|.+++|.|+..-+
T Consensus 249 As~~~g~I~vWnv~t~~~--------~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 249 ASTLDGQILVWNVDTHER--------HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred eeccCCcEEEEecccchh--------ccccceeEEEecCCCCCee
Confidence 999999999999998322 2223446666676665433
No 133
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=4.3e-21 Score=157.89 Aligned_cols=210 Identities=16% Similarity=0.181 Sum_probs=162.8
Q ss_pred CcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCC--eEEEEeCCCeEE
Q 015438 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYASMSPIVH 194 (407)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~dg~i~ 194 (407)
+.....|.++|.+++|+.||..+++|+.|+.+++||+.++... ....|..+|.++.|-+... .|++|+.|.+|+
T Consensus 65 ~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlK 140 (347)
T KOG0647|consen 65 PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLK 140 (347)
T ss_pred chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEeccccccee
Confidence 4566789999999999999999999999999999999998332 2456888999999987554 899999999999
Q ss_pred EEECCCCceecccccccccccee-----------------eeecC--------CCCccccEEEEEEeCCCCEEEEeeCCC
Q 015438 195 IVDVGSGTMESLANVTEIHDGLD-----------------FSAAD--------DGGYSFGIFSLKFSTDGRELVAGSSDD 249 (407)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~-----------------~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~dg 249 (407)
.||++.........+.+.....+ +.... .......+.|++..++....+.|+-.|
T Consensus 141 fWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 141 FWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG 220 (347)
T ss_pred ecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc
Confidence 99999876654444332211100 00000 011344688999999888889999999
Q ss_pred eEEEEEcCCC--eeeeeeeccCC---------CeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCC
Q 015438 250 CIYVYDLEAN--KLSLRILAHTS---------DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 318 (407)
Q Consensus 250 ~i~i~d~~~~--~~~~~~~~~~~---------~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 318 (407)
.+-|..+..+ +.-..++.|.. .|++|+|+| ....|+|++.||++.+||-. ....+.....|..+
T Consensus 221 rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkd----ar~kLk~s~~~~qp 295 (347)
T KOG0647|consen 221 RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKD----ARTKLKTSETHPQP 295 (347)
T ss_pred eEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEEecch----hhhhhhccCcCCCc
Confidence 9999998876 44445666652 478899995 55578899999999999987 66777788889999
Q ss_pred eEEEEecCCCCEEEEEe
Q 015438 319 ITFIDSRGDGRYLISNG 335 (407)
Q Consensus 319 i~~~~~s~~~~~l~s~~ 335 (407)
|++++|+.+|.+++-+.
T Consensus 296 Itcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 296 ITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cceeEecCCCCEEEEEe
Confidence 99999999999887554
No 134
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=3.6e-21 Score=177.83 Aligned_cols=202 Identities=19% Similarity=0.242 Sum_probs=175.7
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 015438 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (407)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~ 202 (407)
....+.+++.++.|++.+.|...|.|-+|++++|...........|..+|++++...-++.+++++.+|.+.+||.....
T Consensus 447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence 35789999999999999999999999999999985444433346788999999998889999999999999999999877
Q ss_pred eeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCC
Q 015438 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282 (407)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~ 282 (407)
......+.. .+.++..+.....++.+..|-.|.++|..+.+.++.+.+|.+.|++++|| ++|
T Consensus 527 l~~~l~l~~-----------------~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS-~Dg 588 (910)
T KOG1539|consen 527 LKKSLRLGS-----------------SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS-PDG 588 (910)
T ss_pred eeeeeccCC-----------------CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC-CCC
Confidence 544433322 67888888888899999999999999999999999999999999999998 899
Q ss_pred CEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCC-CcEEEEECCC
Q 015438 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-QAIKLWDIRK 347 (407)
Q Consensus 283 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-g~i~iwd~~~ 347 (407)
++|++++.|++|++||+. ++.++..+. -..+.+++.|+|+|.+|||...| .-|++|-=++
T Consensus 589 rWlisasmD~tIr~wDlp----t~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 589 RWLISASMDSTIRTWDLP----TGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred cEEEEeecCCcEEEEecc----CcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 999999999999999998 888877664 46688999999999999999988 6699997443
No 135
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=1.3e-21 Score=177.89 Aligned_cols=217 Identities=18% Similarity=0.229 Sum_probs=175.6
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC---CCCeEEEEeCCCeEEEEECC
Q 015438 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQRHLVYASMSPIVHIVDVG 199 (407)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~dg~i~vwd~~ 199 (407)
-...+.+++.||+|++||+|..-|+++||++..- ........|...|.|+.|+. ..++||+++.|.-|+|||+.
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l---~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL---EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhh---hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 3567999999999999999999999999999864 33345667889999999985 36789999999999999987
Q ss_pred CCce-eccc-cccccccceeeeecCC--------------------------------CCccccEEEEEEeCCCCEEEEe
Q 015438 200 SGTM-ESLA-NVTEIHDGLDFSAADD--------------------------------GGYSFGIFSLKFSTDGRELVAG 245 (407)
Q Consensus 200 ~~~~-~~~~-~~~~~~~~~~~~~~~~--------------------------------~~~~~~v~~~~~s~~~~~l~~~ 245 (407)
..-. .... ........++|..... .-....+.+|+..|+.++++++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence 5321 1000 0001111111211110 1123468899999999999999
Q ss_pred eCCCeEEEEEcCCCeeeeeee---ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEE
Q 015438 246 SSDDCIYVYDLEANKLSLRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (407)
Q Consensus 246 ~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~ 322 (407)
++|..|+|||+++++.++.|+ .|.+....+... |.|.|+++.+.|+++.++|.- .++++..+.||...|+.+
T Consensus 615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lD-PSgiY~atScsdktl~~~Df~----sgEcvA~m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILD-PSGIYLATSCSDKTLCFVDFV----SGECVAQMTGHSEAVTGV 689 (1080)
T ss_pred ecccceEEEeccccceeeeecccccCCCceEEEEEC-CCccEEEEeecCCceEEEEec----cchhhhhhcCcchheeee
Confidence 999999999999999998887 466778888884 899999999999999999998 999999999999999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCC
Q 015438 323 DSRGDGRYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 323 ~~s~~~~~l~s~~~dg~i~iwd~~~ 347 (407)
.|.+|.+.|++.+.||.|.||.+..
T Consensus 690 kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 690 KFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eecccchhheeecCCceEEEEECch
Confidence 9999999999999999999999875
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3e-21 Score=167.52 Aligned_cols=232 Identities=17% Similarity=0.179 Sum_probs=183.8
Q ss_pred CEEEEEeC-CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccc
Q 015438 137 SLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (407)
Q Consensus 137 ~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 215 (407)
.+++++.. ...|.+|.+............ .++|.+++-+|+|.+|+.|+..|.|++|.+.+|.......
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~---Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~------- 120 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVL---PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS------- 120 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhccc---ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-------
Confidence 45555543 457999998765444422333 3379999999999999999999999999999998766553
Q ss_pred eeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcC---------CCeeeeeeeccCCCeEEEEecCC-CCCEE
Q 015438 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---------ANKLSLRILAHTSDVNTVCFGDE-SGHLI 285 (407)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~~v~~i~~s~~-~~~~l 285 (407)
+|-..|+|+.|+.||.+|++|+.||.|.+|++. +-+++..+..|.-+|+++...+. ....+
T Consensus 121 ---------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl 191 (476)
T KOG0646|consen 121 ---------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARL 191 (476)
T ss_pred ---------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceE
Confidence 355589999999999999999999999999864 34577888899999999988633 34589
Q ss_pred EEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcc------------c
Q 015438 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA------------S 353 (407)
Q Consensus 286 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~------------~ 353 (407)
+++|.|.++++||+. .+..+.++. ....+.+++.+|-++.++.|+.+|.|.+.++.+..... +
T Consensus 192 ~TaS~D~t~k~wdlS----~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t 266 (476)
T KOG0646|consen 192 YTASEDRTIKLWDLS----LGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT 266 (476)
T ss_pred EEecCCceEEEEEec----cceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence 999999999999997 777776664 56789999999999999999999999999987765111 1
Q ss_pred ccCCCccccc--cceeeeCCCCCCccCCCC-CcceEEEeCCc
Q 015438 354 CNLGFRSYEW--DYRWMDYPPQARDLKHPC-DQSVATYKGHS 392 (407)
Q Consensus 354 ~~~~~~~~~~--~v~~~~~~~~~~~l~~~~-~~~v~~~~gh~ 392 (407)
......++.. .|++++.+-||.+|.+++ |+.+.+|+-.+
T Consensus 267 ~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 267 QINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred eeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 1122334444 899999999999998775 89999998654
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.8e-20 Score=168.44 Aligned_cols=228 Identities=15% Similarity=0.147 Sum_probs=180.1
Q ss_pred cCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCC
Q 015438 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (407)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~ 201 (407)
+-+..|.+++|++. ..|++.+.+|.|.-||+.+.+.... .....+.|++++.+|.+..++.|+.||.+..++...+
T Consensus 67 ~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~~~~---~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~ 142 (691)
T KOG2048|consen 67 PEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLKQKYN---IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD 142 (691)
T ss_pred CCCCceeeEEEccC-CeEEeecCCceEEEEecccCceeEE---ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc
Confidence 34788999999954 4577777899999999999866554 3344558999999999999999999998888887776
Q ss_pred ceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeee-------c-cCCCeE
Q 015438 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-------A-HTSDVN 273 (407)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~-~~~~v~ 273 (407)
.......+. ..++.|.++.|+|++..|+.|+.||.|++||..++..+.... . ...-|.
T Consensus 143 ~I~~~r~l~--------------rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW 208 (691)
T KOG2048|consen 143 KITYKRSLM--------------RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW 208 (691)
T ss_pred eEEEEeecc--------------cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence 654332222 234589999999999999999999999999999987665222 1 233467
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCccc
Q 015438 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (407)
Q Consensus 274 ~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (407)
++.|- ....|++|...|+|.+||.. .+..++.+..|...|.+++..+++.+++++|.|+.|..|...+.+....
T Consensus 209 Sv~~L--rd~tI~sgDS~G~V~FWd~~----~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv 282 (691)
T KOG2048|consen 209 SVLFL--RDSTIASGDSAGTVTFWDSI----FGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWV 282 (691)
T ss_pred EEEEe--ecCcEEEecCCceEEEEccc----CcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcccee
Confidence 77775 44578899999999999998 8999999999999999999999999999999999999999887765333
Q ss_pred ccCCCccccccceeeeCCCC
Q 015438 354 CNLGFRSYEWDYRWMDYPPQ 373 (407)
Q Consensus 354 ~~~~~~~~~~~v~~~~~~~~ 373 (407)
.......+..++++|+..++
T Consensus 283 ~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 283 INSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred eeccccCCcccceeeeeecc
Confidence 33334556666666665544
No 138
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.6e-20 Score=168.63 Aligned_cols=242 Identities=14% Similarity=0.231 Sum_probs=193.3
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 015438 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (407)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~ 202 (407)
-..+|.++||+.+.+.||.+-.+|.|.||++..++.....+.. +....|.+++|++ +..|++.+.+|.|.-||+.+.+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEcc-CCeEEeecCCceEEEEecccCc
Confidence 3678999999999999999999999999999998666554444 4566799999995 5567888899999999999887
Q ss_pred eeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeee--eeeccCCCeEEEEecCC
Q 015438 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFGDE 280 (407)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~i~~s~~ 280 (407)
....... ..+.|.+++.+|.+..+++|++||.++.++...++... .+....+.|.+++|+ +
T Consensus 102 ~~~~~d~----------------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~-~ 164 (691)
T KOG2048|consen 102 QKYNIDS----------------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN-P 164 (691)
T ss_pred eeEEecC----------------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec-C
Confidence 6443322 33489999999999999999999988888888776543 344557899999998 8
Q ss_pred CCCEEEEEeCCCcEEEEeCcccCCCCceeeeec----c----ccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcc
Q 015438 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM----G----HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (407)
Q Consensus 281 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~----~----~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (407)
++..+++|+.||.|++||.. .+..+.... + ...-|.++.|-.++ .|++|..-|+|.+||-..+...+
T Consensus 165 ~~~~i~~Gs~Dg~Iriwd~~----~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiq 239 (691)
T KOG2048|consen 165 TGTKIAGGSIDGVIRIWDVK----SGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQ 239 (691)
T ss_pred CccEEEecccCceEEEEEcC----CCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhh
Confidence 88889999999999999998 555554111 1 12236778777554 69999999999999999988776
Q ss_pred cccCCCccccccceeeeCCCC-CCccCCCCCcceEEEeCCc
Q 015438 353 SCNLGFRSYEWDYRWMDYPPQ-ARDLKHPCDQSVATYKGHS 392 (407)
Q Consensus 353 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~v~~~~gh~ 392 (407)
. +..+..+|.+++..++ .++++++-|+.+.-|.-.+
T Consensus 240 S----~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 240 S----HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred h----hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecC
Confidence 5 6778889999999888 5777788888888886444
No 139
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=3.2e-21 Score=157.66 Aligned_cols=264 Identities=16% Similarity=0.195 Sum_probs=187.7
Q ss_pred cccccCCCceEEEEECCCCC-EEEEEeCC-------CeEEEEEcCCCeEE------eEeee-ccccceEEEEEEECCCCC
Q 015438 118 WPVDQTTSRAYVSQFSADGS-LFVAGFQA-------SQIRIYDVERGWKI------QKDIL-AKSLRWTVTDTSLSPDQR 182 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~d-------g~i~iwd~~~~~~~------~~~~~-~~~~~~~v~~~~~sp~~~ 182 (407)
.+|..|.+.|+.++-+|-.+ .|+++..+ -.+.||.+...... ..... ...+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 35678899999999999655 45555432 24789998653211 11111 123445799999999999
Q ss_pred eEEEEeCCCeEEEEECCCCcee-ccccccccccceeeeecCCCCccccEEEEEEeC--CCCEEEEeeCCCeEEEEEcCCC
Q 015438 183 HLVYASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEAN 259 (407)
Q Consensus 183 ~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~ 259 (407)
.+++-. |..|.+|++..+..+ ...... ...++....++-+|+| +|+.+++. .|+++..||+++.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss-----------~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSS-----------ESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTM 203 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeeccc-----------ccccccceecccccCCCCccceEEEe-CCCcEEEEEccch
Confidence 998865 788999999876652 111111 1123455678889999 77777765 5889999999998
Q ss_pred eeeeeee-ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCC-CCEEEEEeCC
Q 015438 260 KLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKD 337 (407)
Q Consensus 260 ~~~~~~~-~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~~d 337 (407)
+....+. +|...|..+.|+|....+|++|+.||.|+|||.|. ...++..+.+|...|.++.|+|. .++|++||.|
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~---tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK---TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC---CCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 8766664 78888999999988888999999999999999993 67889999999999999999994 5678899999
Q ss_pred CcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCCcceEEEeCCccceeeEEEeeCC
Q 015438 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 404 (407)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh~~~~~~~~~~fsp 404 (407)
..|.+|-..+-+..+.+............. +. .+ ...=.|+.+.+|+-|.+ .|..+.||.
T Consensus 281 s~V~Lsca~svSSE~qi~~~~dese~e~~d---se-er-~kpL~dg~l~tydehED--SVY~~aWSs 340 (370)
T KOG1007|consen 281 SAVNLSCASSVSSEQQIEFEDDESESEDED---SE-ER-VKPLQDGQLETYDEHED--SVYALAWSS 340 (370)
T ss_pred ceeEEEeccccccccccccccccccCcchh---hH-Hh-ccccccccccccccccc--ceEEEeecc
Confidence 999999987765444332221111111100 00 01 01124788999999986 788888874
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=5e-20 Score=164.89 Aligned_cols=243 Identities=16% Similarity=0.146 Sum_probs=171.0
Q ss_pred cccccCCCceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEE-eCCCeEEE
Q 015438 118 WPVDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHI 195 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~dg~i~v 195 (407)
..+..+ ..+.+++|+|+++.+ ++++.++.|++||+.++....... .+. .+..+.|+|+++.++++ +.++.|++
T Consensus 25 ~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 25 RTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---SGP-DPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred EEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---CCC-CccEEEECCCCCEEEEEcCCCCeEEE
Confidence 344444 346789999999976 566778999999998875544321 122 25678999999977665 56899999
Q ss_pred EECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCC-eEEEEEcCCCeeeeeeeccCCCeEE
Q 015438 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHTSDVNT 274 (407)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~ 274 (407)
||+.+......... ...+.+++|+|+++++++++.++ .+.+||..+++....+.. ...+..
T Consensus 100 ~d~~~~~~~~~~~~-----------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~ 161 (300)
T TIGR03866 100 IDIETRKVLAEIPV-----------------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRF 161 (300)
T ss_pred EECCCCeEEeEeeC-----------------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccE
Confidence 99987654332211 11357799999999999888765 577889988877655433 345578
Q ss_pred EEecCCCCCEEE-EEeCCCcEEEEeCcccCCCCceeeeecccc-----C--CeEEEEecCCCCEEEE-EeCCCcEEEEEC
Q 015438 275 VCFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-----E--GITFIDSRGDGRYLIS-NGKDQAIKLWDI 345 (407)
Q Consensus 275 i~~s~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-----~--~i~~~~~s~~~~~l~s-~~~dg~i~iwd~ 345 (407)
++|+ +++++|+ ++..++.|++||++ .++.+..+..+. . ....++|+|++++++. .+.++.|.+||+
T Consensus 162 ~~~s-~dg~~l~~~~~~~~~v~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 162 AEFT-ADGKELWVSSEIGGTVSVIDVA----TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred EEEC-CCCCEEEEEcCCCCEEEEEEcC----cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 9998 6777765 44568999999998 666555443221 1 2356889999998654 455778999999
Q ss_pred CCCCCcccccCCCccccccceeeeCCCCCCccCCC--CCcceEEEeCCcc
Q 015438 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP--CDQSVATYKGHSV 393 (407)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~v~~~~gh~~ 393 (407)
++++...... ....+..+.|+|++..|.++ .++.|.+|+-.+.
T Consensus 237 ~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 237 KTYEVLDYLL-----VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred CCCcEEEEEE-----eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 8876654321 12346688999999887653 4789999997763
No 141
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=7.8e-21 Score=170.83 Aligned_cols=266 Identities=18% Similarity=0.210 Sum_probs=188.9
Q ss_pred cccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC-CCeEEEEeCCCeEEEE
Q 015438 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIV 196 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~i~vw 196 (407)
.....|...|..+.|.|....|++++.|.++++||+..+...... ...+|.+.|.+++|.|. ...|++|+.||.|.||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-eecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 445689999999999997778999999999999999987555443 56789999999999995 4577889999999999
Q ss_pred ECCCCceeccc----cccccccc-------eeeeecCCCCccccEEE---EEEeCCCCEEEEeeC-CCeEEEEEcCCCee
Q 015438 197 DVGSGTMESLA----NVTEIHDG-------LDFSAADDGGYSFGIFS---LKFSTDGRELVAGSS-DDCIYVYDLEANKL 261 (407)
Q Consensus 197 d~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~ 261 (407)
|++-....... .+...+++ ..-.......+...|.+ +.+..|...||+++. |+.|++||+++...
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 99854421111 11111111 11111112234444554 555668888998887 99999999997654
Q ss_pred eee--------eecc---CCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCe--EEEEecCCC
Q 015438 262 SLR--------ILAH---TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI--TFIDSRGDG 328 (407)
Q Consensus 262 ~~~--------~~~~---~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i--~~~~~s~~~ 328 (407)
... +.-| .-.+.++.. +..|.+|++.+.|+.|.+|+++.. ...++..+.++...- ..-..+||+
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~l-DssGt~L~AsCtD~sIy~ynm~s~--s~sP~~~~sg~~~~sf~vks~lSpd~ 329 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLIL-DSSGTYLFASCTDNSIYFYNMRSL--SISPVAEFSGKLNSSFYVKSELSPDD 329 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEe-cCCCCeEEEEecCCcEEEEecccc--CcCchhhccCcccceeeeeeecCCCC
Confidence 322 1122 234667777 377888888888999999999854 344555565553321 122368999
Q ss_pred CEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeC--CCCCCccCCCCCcceEEEeC
Q 015438 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY--PPQARDLKHPCDQSVATYKG 390 (407)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~~~v~~~~g 390 (407)
.+|++|+.|....+|.+.+.+....... .+...|+++.+ ++...++++.+|..+++|.-
T Consensus 330 ~~l~SgSsd~~ayiw~vs~~e~~~~~l~---Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 330 CSLLSGSSDEQAYIWVVSSPEAPPALLL---GHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred ceEeccCCCcceeeeeecCccCChhhhh---CcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 9999999999999999999988877744 44445555555 45678898999999999975
No 142
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=3e-20 Score=162.80 Aligned_cols=261 Identities=13% Similarity=0.158 Sum_probs=199.6
Q ss_pred eccccccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEEC
Q 015438 99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (407)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (407)
+....+..++...+...-..+..+|....+.++.+|+.+.+++++.|+.+++|+ + .+...... ...++.++.|+
T Consensus 343 ~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~~wt~~----~~d~~~~~~fh 416 (626)
T KOG2106|consen 343 LVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKLEWTKI----IEDPAECADFH 416 (626)
T ss_pred EEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C-CceeEEEE----ecCceeEeecc
Confidence 344555667777777777788899999999999999999999999999999999 3 22333322 23368999999
Q ss_pred CCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCC
Q 015438 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (407)
Q Consensus 179 p~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 258 (407)
|.| .+|.|+..|...|.|.++.....+..- ..++++++|+|+|.+||+|+.|+.|++|.+..
T Consensus 417 psg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-----------------~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 417 PSG-VVAVGTATGRWFVLDTETQDLVTIHTD-----------------NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred Ccc-eEEEeeccceEEEEecccceeEEEEec-----------------CCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 999 999999999999999998765544331 33799999999999999999999999999875
Q ss_pred Cee-eeee-eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeee------------------ccccCC
Q 015438 259 NKL-SLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL------------------MGHLEG 318 (407)
Q Consensus 259 ~~~-~~~~-~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~------------------~~~~~~ 318 (407)
... .... ..+.++|+.+.|| .++++|.+-+.|-.|..|... ..+.+... ..+...
T Consensus 479 ~g~~y~r~~k~~gs~ithLDwS-~Ds~~~~~~S~d~eiLyW~~~----~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~ 553 (626)
T KOG2106|consen 479 NGRKYSRVGKCSGSPITHLDWS-SDSQFLVSNSGDYEILYWKPS----ECKQITSVKDVKWATYTCTLGFEVFGGSDGTD 553 (626)
T ss_pred CCcEEEEeeeecCceeEEeeec-CCCceEEeccCceEEEEEccc----cCcccceecceeeeeeEEEEEEEEecccCCch
Confidence 432 2222 2344899999998 899999999999999999543 11111111 124445
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCC-CCCccCCCCCcceEEEe
Q 015438 319 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP-QARDLKHPCDQSVATYK 389 (407)
Q Consensus 319 i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~v~~~~ 389 (407)
|..++-+.+...+++|.+.|+|++|.....+....+.. ...+..-+..++|.. +..+++.+.|.+|..|.
T Consensus 554 i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he-~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 554 INAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHE-YGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred HHHhhhhhhhhhhhccccCceEEEEccccCCCccccee-eccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 66777777889999999999999999887665544322 556777788899965 45777788899988885
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.1e-20 Score=155.09 Aligned_cols=219 Identities=17% Similarity=0.225 Sum_probs=164.3
Q ss_pred ccceEEEEEEECC-CCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeC-CCCEEEE
Q 015438 167 SLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVA 244 (407)
Q Consensus 167 ~~~~~v~~~~~sp-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~ 244 (407)
.|.+.|+++...+ .|+++++|+.||.|.+||++.........+...+.. .+...-..+|...|.++.|-| |..++.+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c-~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKC-IVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheee-eccccCCccceeeeeeeEEeeecCceeec
Confidence 4666788888877 689999999999999999986441111000000000 112223457999999999999 5568999
Q ss_pred eeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCC--CCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEE
Q 015438 245 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (407)
Q Consensus 245 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~ 322 (407)
++-|.++++||..+.+....+. .++.|.+-+++|-. ..++++|..|-.|++.|+. .+.....+.||...|.++
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~----SGs~sH~LsGHr~~vlaV 194 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA----SGSFSHTLSGHRDGVLAV 194 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc----CCcceeeeccccCceEEE
Confidence 9999999999999998877774 46778888888643 3477888888999999998 899999999999999999
Q ss_pred EecCCCCE-EEEEeCCCcEEEEECCCCC-Ccccc----------cCCCccccccceeeeCCCCCCcc-CCCCCcceEEEe
Q 015438 323 DSRGDGRY-LISNGKDQAIKLWDIRKMS-SNASC----------NLGFRSYEWDYRWMDYPPQARDL-KHPCDQSVATYK 389 (407)
Q Consensus 323 ~~s~~~~~-l~s~~~dg~i~iwd~~~~~-~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~v~~~~ 389 (407)
.|+|...+ |++|+.||.|++||++.-. +...+ ......+...+..++|+.+++.+ .++.|+.++.|+
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 99997765 6789999999999999752 11111 01133455667889999998655 567888899997
Q ss_pred CC
Q 015438 390 GH 391 (407)
Q Consensus 390 gh 391 (407)
-.
T Consensus 275 ~~ 276 (397)
T KOG4283|consen 275 ME 276 (397)
T ss_pred cc
Confidence 44
No 144
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=156.48 Aligned_cols=249 Identities=19% Similarity=0.265 Sum_probs=185.2
Q ss_pred CCceEEEEEC-------CCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccce---EEEEEEECCCCCeEEEEeCCCeE
Q 015438 124 TSRAYVSQFS-------ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMSPIV 193 (407)
Q Consensus 124 ~~~v~~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~dg~i 193 (407)
...|+..+|- |+..++|+.+.+.-|++||.-+|+... ......|.. ...+++|+|||.+|++| ....|
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lra-Sy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrci 181 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRA-SYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCI 181 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeecccccccc-chhhhhhHHhhhhheeEEecCCCCeEeec-ccceE
Confidence 5677888886 677899999999999999999884332 223333332 34689999999999876 56789
Q ss_pred EEEECC-CCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCCeeeeeeeccCCC
Q 015438 194 HIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (407)
Q Consensus 194 ~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 271 (407)
+++|+. .+.......... ....+..+-|.+++|+|-. +.+++|+....+=||.-..+.++..+-+|.+.
T Consensus 182 rvFdt~RpGr~c~vy~t~~---------~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG 252 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTTVT---------KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG 252 (406)
T ss_pred EEeeccCCCCCCcchhhhh---------cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC
Confidence 999994 443222211111 1122456679999999954 58999999999999988888999999999999
Q ss_pred eEEEEecCCCCCEEEEEeC-CCcEEEEeCcccCCCCceeeeeccccC-CeEE--EEecCCCCEEEEEeCCCcEEEEECCC
Q 015438 272 VNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMGHLE-GITF--IDSRGDGRYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 272 v~~i~~s~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~-~i~~--~~~s~~~~~l~s~~~dg~i~iwd~~~ 347 (407)
|+.++|+ ++|+.|++|.. |-.|..||+|. ...++..+..|.. .=.. ....|++++|++|+.||.|++||++.
T Consensus 253 vThL~~~-edGn~lfsGaRk~dkIl~WDiR~---~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 253 VTHLQWC-EDGNKLFSGARKDDKILCWDIRY---SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred eeeEEec-cCcCeecccccCCCeEEEEeehh---ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 9999998 88888888874 67999999993 5677888887766 2223 34578999999999999999999998
Q ss_pred CCCcccccCCCccccccceeeeCCCCCCccCCCCCcceEEEeC
Q 015438 348 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390 (407)
Q Consensus 348 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~g 390 (407)
.-..... .......+..++++|-..+++.++++.+..+.-
T Consensus 329 ~gn~~sv---~~~~sd~vNgvslnP~mpilatssGqr~f~~~~ 368 (406)
T KOG2919|consen 329 LGNEVSV---TGNYSDTVNGVSLNPIMPILATSSGQRIFKYPK 368 (406)
T ss_pred CCCcccc---cccccccccceecCcccceeeeccCceeecCCC
Confidence 4332221 333444566788888888888887776666643
No 145
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=3.9e-20 Score=153.95 Aligned_cols=254 Identities=17% Similarity=0.215 Sum_probs=185.8
Q ss_pred cccccCCCceEEEEECC----C-CCEEEEEeCCCeEEEEEcCCCe--EEeEeeeccccceEEEEEEECCC----CCeEEE
Q 015438 118 WPVDQTTSRAYVSQFSA----D-GSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPD----QRHLVY 186 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~----~-~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~sp~----~~~l~~ 186 (407)
.+.++|+.+|..++|++ + -..+|++ ..+.+.||...... ++........+......++|+-+ ..++|+
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatv-G~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATV-GGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEe-CCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 35578899999999985 2 2345555 45679999876542 33333333456667888888764 457899
Q ss_pred EeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCCeeeeee
Q 015438 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI 265 (407)
Q Consensus 187 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~ 265 (407)
++.-|.|+|.|+.+++...... +|...|+.+.+.|+. +++++++.|..|++|++++..++..+
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~----------------ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYR----------------GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred ecceeEEEEEecchhhhcccee----------------ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 9999999999999887654433 577899999999965 68999999999999999999998776
Q ss_pred ---eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccC--------------CC-----------------------
Q 015438 266 ---LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN--------------VK----------------------- 305 (407)
Q Consensus 266 ---~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~--------------~~----------------------- 305 (407)
.+|.+.|.++.|+ .++.+|++++.|.+|++|++...+ .+
T Consensus 175 GG~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrny 253 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNY 253 (385)
T ss_pred cccccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccch
Confidence 4799999999998 889999999999999999987110 00
Q ss_pred -------------------------Cce----------------eeeeccccCCeEEEE--ecCCCCEEEEEeCCCcEEE
Q 015438 306 -------------------------GKP----------------AGVLMGHLEGITFID--SRGDGRYLISNGKDQAIKL 342 (407)
Q Consensus 306 -------------------------~~~----------------~~~~~~~~~~i~~~~--~s~~~~~l~s~~~dg~i~i 342 (407)
++. +..+.-....|..+. |+|-+++||.|...|.|.+
T Consensus 254 VDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 254 VDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 000 000000111233443 4666889999999999999
Q ss_pred EECCCCCCcccccCCCccccccceeeeCCCCCCccC-CCCCcceEEEe
Q 015438 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK-HPCDQSVATYK 389 (407)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~v~~~~ 389 (407)
||+++..+...-...+......|+..+|+.++++|. +.+|.+|..|+
T Consensus 334 wdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 334 WDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 999998775332233455667789999999998775 45667777764
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=7e-21 Score=164.28 Aligned_cols=211 Identities=15% Similarity=0.217 Sum_probs=162.9
Q ss_pred ccCCCceEEEEECCCC-CEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC-CCeEEEEeCCCeEEEEEC
Q 015438 121 DQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDV 198 (407)
Q Consensus 121 ~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~i~vwd~ 198 (407)
.+|+..|.+++|+..- ..||+|+.|.+|++||+.++++... ...|...|.++.|+|. ...|++|+.|++|.+.|.
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s---~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSS---ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCccee---hhhcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence 3799999999999864 5788999999999999999966543 4467889999999994 678999999999999999
Q ss_pred CCCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCC-eeeeeeeccCCCeEEEE
Q 015438 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVC 276 (407)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~ 276 (407)
+........ + ...+.|-.+.|.|.. ..+++++.||+|+-+|++.. +++.++.+|.++|.+|+
T Consensus 317 R~~~~s~~~-w---------------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~ 380 (463)
T KOG0270|consen 317 RDPSNSGKE-W---------------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLS 380 (463)
T ss_pred cCccccCce-E---------------EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEE
Confidence 853221110 0 022378899999955 57888899999999999976 89999999999999999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCC-CEEEEEeCCCcEEEEECCCCCCcc
Q 015438 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNA 352 (407)
Q Consensus 277 ~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~ 352 (407)
++.....++++++.|+.|++|++.... .+.+..-.-.-+...|.++.|+- -+|+.||..+.++|||+.+...+.
T Consensus 381 ~n~~~p~~l~t~s~d~~Vklw~~~~~~--~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 381 VNIQTPGLLSTASTDKVVKLWKFDVDS--PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred ecCCCCcceeeccccceEEEEeecCCC--CcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 998889999999999999999996321 11111111112234556677755 457788888899999998865543
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.4e-19 Score=149.37 Aligned_cols=241 Identities=16% Similarity=0.252 Sum_probs=173.5
Q ss_pred ccccceeeeeccCCCCcc----cccCCCceEEEEECC--CCCEEEEEeCCCeEEEEEcCC------CeEEeEeeeccccc
Q 015438 102 ADCCHMLSRYLPVNGPWP----VDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVER------GWKIQKDILAKSLR 169 (407)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~----~~~h~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~~ 169 (407)
.++...++........|. ...|.+.|..+.|.+ -|+.+|+++.|+++.||.-.. +.............
T Consensus 33 sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr 112 (361)
T KOG2445|consen 33 SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR 112 (361)
T ss_pred CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCC
Confidence 444455555434444443 357999999999987 489999999999999998521 12223334455567
Q ss_pred eEEEEEEECCC--CCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCC---CCEEEE
Q 015438 170 WTVTDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVA 244 (407)
Q Consensus 170 ~~v~~~~~sp~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~ 244 (407)
..|+++.|.|. |-.||+++.||.|+||+.-..-....-.+.. .+..-..+.+.+.....|+.|+|. ..+|++
T Consensus 113 ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~---Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAv 189 (361)
T KOG2445|consen 113 SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH---EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAV 189 (361)
T ss_pred cceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh---hhhhccCCcccccCcceEEeeccccccCceEEE
Confidence 78999999994 7789999999999999876432222111111 111112233456668899999984 357888
Q ss_pred eeCC-----CeEEEEEcCCC----eeeeeeeccCCCeEEEEecCCCC---CEEEEEeCCCcEEEEeCccc----------
Q 015438 245 GSSD-----DCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDESG---HLIYSGSDDNLCKVWDRRCL---------- 302 (407)
Q Consensus 245 ~~~d-----g~i~i~d~~~~----~~~~~~~~~~~~v~~i~~s~~~~---~~l~s~~~d~~i~vwd~~~~---------- 302 (407)
|+.+ +.++||..... ..+..+..|..+|++|+|.|.-| ++|++++.|| |+||.++..
T Consensus 190 gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~ 268 (361)
T KOG2445|consen 190 GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVL 268 (361)
T ss_pred EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhccc
Confidence 8766 46888876433 34566779999999999997655 5899999999 999998721
Q ss_pred ------CCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 015438 303 ------NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (407)
Q Consensus 303 ------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~ 346 (407)
+..-+.+..+.+|.+.|..+.|+-.|..|++.|.||.|++|...
T Consensus 269 ~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 269 APDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred CCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 11223455677899999999999999999999999999999865
No 148
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=5.3e-19 Score=158.26 Aligned_cols=244 Identities=14% Similarity=0.145 Sum_probs=168.8
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeE-EEEeCCCeEEEEECCCCceecccccccccc
Q 015438 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (407)
Q Consensus 136 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 214 (407)
+..+++++.|+.|++||+.++....... .+. .+.++.|+|+++.+ ++++.++.|++||+.+++.......
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~---~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----- 71 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFP---VGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS----- 71 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEE---CCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-----
Confidence 3578899999999999998876554432 222 36789999999877 5567889999999988765432211
Q ss_pred ceeeeecCCCCccccEEEEEEeCCCCEEEEe-eCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCC-
Q 015438 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN- 292 (407)
Q Consensus 215 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~- 292 (407)
+ ..+..++|+|+++.++++ ..++.|++||+++.+.+..+.. ...+.+++|+ ++++++++++.++
T Consensus 72 -----------~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~-~dg~~l~~~~~~~~ 137 (300)
T TIGR03866 72 -----------G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS-PDGKIVVNTSETTN 137 (300)
T ss_pred -----------C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC-CCCCEEEEEecCCC
Confidence 0 124568999999977654 5689999999998887776643 3456889998 7888888888765
Q ss_pred cEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEe-CCCcEEEEECCCCCCcccccCCC---ccccccceee
Q 015438 293 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGF---RSYEWDYRWM 368 (407)
Q Consensus 293 ~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~v~~~ 368 (407)
.+.+||.+ .+..+.... ....+..++|+|++++|++++ .++.|++||+++++....+.... .........+
T Consensus 138 ~~~~~d~~----~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i 212 (300)
T TIGR03866 138 MAHFIDTK----TYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGI 212 (300)
T ss_pred eEEEEeCC----CCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccce
Confidence 57788987 555544332 233567899999999886554 69999999999887654432111 0111123357
Q ss_pred eCCCCCCcc--CCCCCcceEEEeCCccc--------eeeEEEeeCCCCC
Q 015438 369 DYPPQARDL--KHPCDQSVATYKGHSVL--------RTLIRCHFSPVYR 407 (407)
Q Consensus 369 ~~~~~~~~l--~~~~~~~v~~~~gh~~~--------~~~~~~~fsp~~~ 407 (407)
.|+|+++.+ +.+.++.+.+|+..+.. ..+..+.|+|+++
T Consensus 213 ~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~ 261 (300)
T TIGR03866 213 KLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEK 261 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCC
Confidence 789999863 34556678888764321 1244577888864
No 149
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.3e-19 Score=150.30 Aligned_cols=290 Identities=13% Similarity=0.132 Sum_probs=202.5
Q ss_pred cccchhhhccCccCcc-----CCCcee---ccccccceeeeecc--CCCCccc--ccCCCceEEEEECCCCCEEEEE-eC
Q 015438 78 LPVSTVKMLAGREGNY-----SGRGRF---SAADCCHMLSRYLP--VNGPWPV--DQTTSRAYVSQFSADGSLFVAG-FQ 144 (407)
Q Consensus 78 ~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~--~~~~~~~--~~h~~~v~~~~~s~~~~~l~~~-~~ 144 (407)
...-.+..|.+|...+ +.+++. ...|+.+.+|..-. .+.-..+ .---+..+.+.|+||-+-+++. -.
T Consensus 74 ~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 74 VHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred ccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc
Confidence 3444566778877665 445554 23455555654322 1111111 1112356788999998766654 44
Q ss_pred CCeEEEEEcCCCeE---------EeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccc
Q 015438 145 ASQIRIYDVERGWK---------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (407)
Q Consensus 145 dg~i~iwd~~~~~~---------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 215 (407)
...+++|.+..... .-.......|...+..+-...++++|++++.|..|.+|++. |+.........
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq---- 228 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ---- 228 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc----
Confidence 56799998754211 11111234455667777778889999999999999999998 55544333221
Q ss_pred eeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCC---C-----eeeeeeeccCCCeEEEEecCCCCCEEEE
Q 015438 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---N-----KLSLRILAHTSDVNTVCFGDESGHLIYS 287 (407)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~---~-----~~~~~~~~~~~~v~~i~~s~~~~~~l~s 287 (407)
..-...+.+|+|++|++++-.-.|++|.+-- | +.+..+.+|...|...+|+ ++...+++
T Consensus 229 ------------~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs-n~S~r~vt 295 (420)
T KOG2096|consen 229 ------------SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS-NSSTRAVT 295 (420)
T ss_pred ------------ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC-CCcceeEE
Confidence 1345678999999999999888999998732 2 2456788999999999998 78888999
Q ss_pred EeCCCcEEEEeCccc---CCCCceeeee----ccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCcc
Q 015438 288 GSDDNLCKVWDRRCL---NVKGKPAGVL----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360 (407)
Q Consensus 288 ~~~d~~i~vwd~~~~---~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (407)
.+.||++++||+.-. ....+.+... ..-.+....++++|+|..|+.+. ...++++..+.++....+ ...
T Consensus 296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~---e~~ 371 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPEL---EDI 371 (420)
T ss_pred EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhH---HHh
Confidence 999999999998621 1122222222 11223345899999999888665 567999999998887776 567
Q ss_pred ccccceeeeCCCCCCccCCCCCcceEEEe
Q 015438 361 YEWDYRWMDYPPQARDLKHPCDQSVATYK 389 (407)
Q Consensus 361 ~~~~v~~~~~~~~~~~l~~~~~~~v~~~~ 389 (407)
+...|.+++|+++|++++..+|+.++++.
T Consensus 372 h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 372 HSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred hcCceeeEEecCCCcEEeeecceeeeeec
Confidence 88899999999999999999999999986
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.6e-20 Score=164.11 Aligned_cols=275 Identities=14% Similarity=0.129 Sum_probs=195.4
Q ss_pred cccccceeeeeccCCCCcccccCC--CceEEEEECCCCCEEEE--EeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEE
Q 015438 101 AADCCHMLSRYLPVNGPWPVDQTT--SRAYVSQFSADGSLFVA--GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (407)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (407)
..+....+++.........+..|+ -.+..+.|+.... |++ .+.|..|++|.-... ..............-.|++
T Consensus 9 S~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~~~Cv~ 86 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK-TPEVPRVRKLTGDNAFCVA 86 (673)
T ss_pred ccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCC-CCccceeeccccchHHHHh
Confidence 344445555554444444444442 3488899988664 444 345788999975432 1111111111111234444
Q ss_pred ECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEc
Q 015438 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (407)
Q Consensus 177 ~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 256 (407)
......++++|+..+.|+|||++...+.... .+|+..|+++.++-...+||+++..|.|.|..+
T Consensus 87 ~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~l----------------kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 87 CASQSLYEISGGQSGCVKIWDLRAKLIHRFL----------------KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred hhhcceeeeccCcCceeeehhhHHHHHhhhc----------------cCCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 4445689999999999999999854433222 257789999999999999999999999999999
Q ss_pred CCCeeeeeeeccCC-CeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeee-eccccCCeEEEEecCC-CCEEEE
Q 015438 257 EANKLSLRILAHTS-DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGD-GRYLIS 333 (407)
Q Consensus 257 ~~~~~~~~~~~~~~-~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~-~~~l~s 333 (407)
.++.....|....+ .|.-+.|+|....+|.+++.+|.|.+||+. ...++.. ...|..+...|+|+|. ..+|++
T Consensus 151 ~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~----g~sp~~~~~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 151 KTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ----GMSPIFHASEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred ccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc----CCCcccchhhhccCCcCcceecCCccceEEE
Confidence 99988777765534 455899998788889999999999999997 4444443 4579999999999995 567889
Q ss_pred EeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCC-c------------ceEEEeCCccceeeEEE
Q 015438 334 NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD-Q------------SVATYKGHSVLRTLIRC 400 (407)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~------------~v~~~~gh~~~~~~~~~ 400 (407)
.|.|..|.+||++..+....+ ....+++.++|+++|.+|+.+.. + .|.+...|.. .|.++
T Consensus 227 VG~Dkki~~yD~~s~~s~~~l-----~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~--sVt~v 299 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQASTDRL-----TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA--SVTRV 299 (673)
T ss_pred ecccceEEEeeccccccccee-----eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc--ceeEE
Confidence 999999999999976655433 45678899999999999988753 3 3455556776 46777
Q ss_pred eeCC
Q 015438 401 HFSP 404 (407)
Q Consensus 401 ~fsp 404 (407)
+|-|
T Consensus 300 afq~ 303 (673)
T KOG4378|consen 300 AFQP 303 (673)
T ss_pred Eeee
Confidence 7755
No 151
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=1.4e-20 Score=170.76 Aligned_cols=269 Identities=11% Similarity=0.160 Sum_probs=195.6
Q ss_pred cccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcC-CCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEE
Q 015438 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vw 196 (407)
....||.+.|..++|+|.|.+|++++.|.+-|++-.- .....+....++-|...++|++|-+....+++|.....+++|
T Consensus 355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF 434 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVF 434 (764)
T ss_pred cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeee
Confidence 3567999999999999999999999999999999765 223345566677788899999998877778888888999999
Q ss_pred ECCCCcee----------------------ccc-----ccc--cccccee----ee------------------------
Q 015438 197 DVGSGTME----------------------SLA-----NVT--EIHDGLD----FS------------------------ 219 (407)
Q Consensus 197 d~~~~~~~----------------------~~~-----~~~--~~~~~~~----~~------------------------ 219 (407)
+....-.. ... ... ....+.. +.
T Consensus 435 ~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tL 514 (764)
T KOG1063|consen 435 EAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTL 514 (764)
T ss_pred cCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhcc
Confidence 76431000 000 000 0000000 00
Q ss_pred ---ecCCCCccccEEEEEEeCCCCEEEEeeCC-----CeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCC
Q 015438 220 ---AADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD 291 (407)
Q Consensus 220 ---~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d 291 (407)
.+...||...|++++.+|+++++|++... ..|++|+..+...+..+..|.-.|+.++|| +++++|++.+.|
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS-pdg~~LLsvsRD 593 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS-PDGRYLLSVSRD 593 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC-CCCcEEEEeecC
Confidence 01115789999999999999999998754 359999999998888899999999999998 899999999999
Q ss_pred CcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCC--CCcccccCCCccccccceeee
Q 015438 292 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM--SSNASCNLGFRSYEWDYRWMD 369 (407)
Q Consensus 292 ~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~v~~~~ 369 (407)
+++.+|...............+.|..-|.+++|+|++.+|+|+|.|.+|++|..... +....+ ........++.++
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~--a~~~~~~aVTAv~ 671 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF--ACLKFSLAVTAVA 671 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh--chhccCCceeeEE
Confidence 999999875222122223346789989999999999999999999999999999887 333321 1223344555555
Q ss_pred CCC-----CCCccCCCC-CcceEEEe
Q 015438 370 YPP-----QARDLKHPC-DQSVATYK 389 (407)
Q Consensus 370 ~~~-----~~~~l~~~~-~~~v~~~~ 389 (407)
+.| .+.+++++- .+.|.+|+
T Consensus 672 ~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 672 YLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred eeccccccccceEEEEecccEEEEEe
Confidence 533 233555553 45566665
No 152
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=3.6e-20 Score=151.72 Aligned_cols=212 Identities=14% Similarity=0.195 Sum_probs=163.7
Q ss_pred ccCCCceEEEEECCCCC-----EEEEEeCCCeEEEEEcCCCe-EEeE-----eeeccccceEEEEEEECC-CCCeEEEEe
Q 015438 121 DQTTSRAYVSQFSADGS-----LFVAGFQASQIRIYDVERGW-KIQK-----DILAKSLRWTVTDTSLSP-DQRHLVYAS 188 (407)
Q Consensus 121 ~~h~~~v~~~~~s~~~~-----~l~~~~~dg~i~iwd~~~~~-~~~~-----~~~~~~~~~~v~~~~~sp-~~~~l~~~~ 188 (407)
..|.-+++.+.|.|+.. +||+.+ ..+++|.+...+ .+.. ......+..+++++.|+. +-++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 46889999999999863 566553 479999987421 1111 111234566899999987 677888999
Q ss_pred CCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCCeeeeeeec
Q 015438 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILA 267 (407)
Q Consensus 189 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 267 (407)
-|-++.|||++++....+..- .-+|..+|..++|...+ +.||+.+.||.|++||++..+....+..
T Consensus 171 iDTTCTiWdie~~~~~~vkTQ-------------LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE 237 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQ-------------LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE 237 (364)
T ss_pred ccCeEEEEEEeeccccceeeE-------------EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec
Confidence 999999999998732111100 01366689999999865 4899999999999999998765444432
Q ss_pred ---cCCCeEEEEecCCCCCEEEEEeCC-CcEEEEeCcccCCCCceeeeeccccCCeEEEEecCC-CCEEEEEeCCCcEEE
Q 015438 268 ---HTSDVNTVCFGDESGHLIYSGSDD-NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKL 342 (407)
Q Consensus 268 ---~~~~v~~i~~s~~~~~~l~s~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~~dg~i~i 342 (407)
...+...++|++.+.+++++-..| ..|.|.|+| ..+.++..+++|.+.|++++|.|. ...|+|+|.|..+.+
T Consensus 238 ~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR---~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qali 314 (364)
T KOG0290|consen 238 DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR---VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALI 314 (364)
T ss_pred CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec---CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEE
Confidence 245788999999999999987766 589999999 477899999999999999999995 578999999999999
Q ss_pred EECCCCCC
Q 015438 343 WDIRKMSS 350 (407)
Q Consensus 343 wd~~~~~~ 350 (407)
||+..+-.
T Consensus 315 WDl~q~~~ 322 (364)
T KOG0290|consen 315 WDLQQMPR 322 (364)
T ss_pred Eecccccc
Confidence 99987644
No 153
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=1.1e-19 Score=163.39 Aligned_cols=260 Identities=19% Similarity=0.229 Sum_probs=175.8
Q ss_pred EEEEECC---CCCEEEEEeCCCeEEEEEcCCCeEE---eEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCC
Q 015438 128 YVSQFSA---DGSLFVAGFQASQIRIYDVERGWKI---QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (407)
Q Consensus 128 ~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~ 201 (407)
.+..|++ ....|+.+..||.|.++|.....-. ..+.....|...|.++.|-|....|++++.|.++++||+++.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 3466765 3457889999999999998653111 123345678889999999997788999999999999999988
Q ss_pred ceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCCee-------------------
Q 015438 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL------------------- 261 (407)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~------------------- 261 (407)
.+..... .-||.+.|.+++|.|.. ..|++|+.||.|.|||++-...
T Consensus 133 ~l~G~~~--------------~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 133 RLVGGRL--------------NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred eeeccee--------------ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 7655421 12688899999999965 5889999999999999873320
Q ss_pred --------eeeeeccCCC----eEEEEecCCCCCEEEEEeC-CCcEEEEeCcccCCC--Ccee--eeeccc---cCCeEE
Q 015438 262 --------SLRILAHTSD----VNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVK--GKPA--GVLMGH---LEGITF 321 (407)
Q Consensus 262 --------~~~~~~~~~~----v~~i~~s~~~~~~l~s~~~-d~~i~vwd~~~~~~~--~~~~--~~~~~~---~~~i~~ 321 (407)
+....++... |+.+.| .|...|++++. |+.|+|||+|..... ..+. ..+..| .-++++
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 0111123333 455666 67788888887 999999999843211 1122 222223 336788
Q ss_pred EEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCC-CCcceEEE------------
Q 015438 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATY------------ 388 (407)
Q Consensus 322 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~------------ 388 (407)
+..+..|.+|++.+.|++|++|++.+................-+..-..+|++..++++ .|....+|
T Consensus 277 L~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l 356 (720)
T KOG0321|consen 277 LILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL 356 (720)
T ss_pred EEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh
Confidence 88888899999999999999999998766543322111111112223357777666654 45554444
Q ss_pred eCCccceeeEEEeeCCC
Q 015438 389 KGHSVLRTLIRCHFSPV 405 (407)
Q Consensus 389 ~gh~~~~~~~~~~fsp~ 405 (407)
.||+. .|..|+|.|-
T Consensus 357 ~Ght~--eVt~V~w~pS 371 (720)
T KOG0321|consen 357 LGHTR--EVTTVRWLPS 371 (720)
T ss_pred hCcce--EEEEEeeccc
Confidence 47775 4556666653
No 154
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=9.6e-19 Score=153.46 Aligned_cols=247 Identities=13% Similarity=0.154 Sum_probs=179.5
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCce
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~ 203 (407)
..-|.|++|.++|+ +++|..+|.|.||+..+.+.... . ..|.+.|.+++.-.+|.+|- |+.|..|..||-.-.+.
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~-~--~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~ 320 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQ-V--HAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKL 320 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeE-e--eecCCceEEEEEecCccEee-cCccceEEecccccccc
Confidence 36799999999997 67899999999999876543333 2 27888899999998987655 99999999999332211
Q ss_pred ecccccccccccee--------eee----------c-------CCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCC
Q 015438 204 ESLANVTEIHDGLD--------FSA----------A-------DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (407)
Q Consensus 204 ~~~~~~~~~~~~~~--------~~~----------~-------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 258 (407)
....+++....+. +-. . ...+|......++.+|+...++++++|+.+++|+ .
T Consensus 321 -r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~ 397 (626)
T KOG2106|consen 321 -RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--D 397 (626)
T ss_pred -ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--C
Confidence 1111111100000 000 0 0025677888999999999999999999999999 3
Q ss_pred CeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCC
Q 015438 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ 338 (407)
Q Consensus 259 ~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg 338 (407)
.++.-.. .-..++.|+.|+ +.+ .++.|+..|...+.|.. +...+ .+....++++.++|+|+|.+||.|+.|+
T Consensus 398 ~k~~wt~-~~~d~~~~~~fh-psg-~va~Gt~~G~w~V~d~e----~~~lv-~~~~d~~~ls~v~ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 398 HKLEWTK-IIEDPAECADFH-PSG-VVAVGTATGRWFVLDTE----TQDLV-TIHTDNEQLSVVRYSPDGAFLAVGSHDN 469 (626)
T ss_pred CceeEEE-EecCceeEeecc-Ccc-eEEEeeccceEEEEecc----cceeE-EEEecCCceEEEEEcCCCCEEEEecCCC
Confidence 3443332 346789999998 667 89999999999999997 54444 3433488999999999999999999999
Q ss_pred cEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCC-cceEEE
Q 015438 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD-QSVATY 388 (407)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~v~~~ 388 (407)
.|.||-+........... +....+++.+.|++|++++...+. --|--|
T Consensus 470 ~iyiy~Vs~~g~~y~r~~--k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVG--KCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eEEEEEECCCCcEEEEee--eecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 999999986554443322 233388999999999988876543 334444
No 155
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=4.4e-19 Score=161.09 Aligned_cols=253 Identities=16% Similarity=0.239 Sum_probs=185.5
Q ss_pred ccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEe--Eeeec--cccceEEEEEEECCCCCeEEEEeCCCeEE
Q 015438 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ--KDILA--KSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~dg~i~ 194 (407)
.+.||.+-|+++.|+|.+..|++++.|.++.||..++..-+. ..... .+.........|+|+++.+++-+..|-.+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 345999999999999999999999999999999987641121 11111 12234588999999999999999999999
Q ss_pred EEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC---------------
Q 015438 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--------------- 259 (407)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--------------- 259 (407)
+|.......= .......||...|.++.|+|.|.+|++.+.|-+-++|-.-..
T Consensus 342 lWkt~d~~~w-------------~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy 408 (764)
T KOG1063|consen 342 LWKTKDKTFW-------------TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY 408 (764)
T ss_pred EEeccCccce-------------eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccc
Confidence 9983221110 011123468888999999999999988888876655421100
Q ss_pred --------------------ee----------------------------------------------------------
Q 015438 260 --------------------KL---------------------------------------------------------- 261 (407)
Q Consensus 260 --------------------~~---------------------------------------------------------- 261 (407)
+.
T Consensus 409 Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~ 488 (764)
T KOG1063|consen 409 DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVC 488 (764)
T ss_pred cceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccccee
Confidence 00
Q ss_pred -----------------------------eeeeeccCCCeEEEEecCCCCCEEEEEeCC-----CcEEEEeCcccCCCCc
Q 015438 262 -----------------------------SLRILAHTSDVNTVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGK 307 (407)
Q Consensus 262 -----------------------------~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~ 307 (407)
+.++.+|...|.+++.+ ++++++++++.. ..|++|+.. .-.
T Consensus 489 ~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s-~~gnliASaCKS~~~ehAvI~lw~t~----~W~ 563 (764)
T KOG1063|consen 489 AETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAIS-PTGNLIASACKSSLKEHAVIRLWNTA----NWL 563 (764)
T ss_pred eecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEec-CCCCEEeehhhhCCccceEEEEEecc----chh
Confidence 11223577789999998 899999998754 469999997 667
Q ss_pred eeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCccc---ccCCCccccccceeeeCCCCCC-ccCCCCCc
Q 015438 308 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS---CNLGFRSYEWDYRWMDYPPQAR-DLKHPCDQ 383 (407)
Q Consensus 308 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~ 383 (407)
.++.+.+|.-.|+.++|||||++|++.+.|.++.+|.......... +...+....|+ ..++|++. +.+++.|.
T Consensus 564 ~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWd---csW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 564 QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWD---CSWSPDEKYFATASRDK 640 (764)
T ss_pred hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEE---cccCcccceeEEecCCc
Confidence 7778999999999999999999999999999999999854333221 12334555565 45788887 55677899
Q ss_pred ceEEEeCCc
Q 015438 384 SVATYKGHS 392 (407)
Q Consensus 384 ~v~~~~gh~ 392 (407)
.|++|.-..
T Consensus 641 ~VkVW~~~~ 649 (764)
T KOG1063|consen 641 KVKVWEEPD 649 (764)
T ss_pred eEEEEeccC
Confidence 999997543
No 156
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=1.7e-21 Score=168.92 Aligned_cols=279 Identities=14% Similarity=0.127 Sum_probs=213.0
Q ss_pred CCCCCcccchhhhccCccCccCCCcee--ccccccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEE
Q 015438 73 PGKRHLPVSTVKMLAGREGNYSGRGRF--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRI 150 (407)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~i 150 (407)
....++..-.++.+.+....|..+|+. ......++....|.+.....-......|..+.|-.+.++||++ +...++|
T Consensus 117 ~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yv 195 (545)
T KOG1272|consen 117 ASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYV 195 (545)
T ss_pred HhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEE
Confidence 334445555566777777788888886 4455667777777777777767778999999999999988887 5688999
Q ss_pred EEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccE
Q 015438 151 YDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI 230 (407)
Q Consensus 151 wd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 230 (407)
||-. |..++++.... .|..+.|-|..-+|++++..|.++.-|+.+|+....+... .+.+
T Consensus 196 YD~~-GtElHClk~~~----~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~----------------~G~~ 254 (545)
T KOG1272|consen 196 YDNN-GTELHCLKRHI----RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG----------------AGRT 254 (545)
T ss_pred ecCC-CcEEeehhhcC----chhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc----------------CCcc
Confidence 9954 55566543332 4899999999999999999999999999999886655432 2367
Q ss_pred EEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceee
Q 015438 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 310 (407)
Q Consensus 231 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 310 (407)
..|+-+|-...+-+|..+|+|.+|.....+++..+..|.++|.+|++. ++|++++|.+.|..++|||+| ....+.
T Consensus 255 ~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~-~~G~YMaTtG~Dr~~kIWDlR----~~~ql~ 329 (545)
T KOG1272|consen 255 DVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVD-RGGRYMATTGLDRKVKIWDLR----NFYQLH 329 (545)
T ss_pred chhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEEC-CCCcEEeecccccceeEeeec----cccccc
Confidence 789999988899999999999999999999999999999999999996 999999999999999999999 444555
Q ss_pred eeccccCCeEEEEecCCCCEEEEEeCCCcEEEEE-CCCCCCcccccCCCccccccceeeeCCCCCCccCCCC
Q 015438 311 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD-IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 381 (407)
Q Consensus 311 ~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 381 (407)
++.. ..+...+++|..| +++.+....|.||. .-.+.......--.......|..+.|.|-..+|.++.
T Consensus 330 t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 330 TYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred eeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence 5543 3466788888766 66667778899994 3332211111111222334788888988888877654
No 157
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.8e-19 Score=142.25 Aligned_cols=245 Identities=16% Similarity=0.198 Sum_probs=169.1
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCe-------EEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 015438 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGW-------KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (407)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~ 198 (407)
.|.+-+|+|.+++|++|..+|.|.+..+..-. -.........|.++|..++|. ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 45666899999999999999999999875420 011223447899999999997 45677765 499999987
Q ss_pred CCCce-eccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEe
Q 015438 199 GSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (407)
Q Consensus 199 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 277 (407)
+.... .....+.+....... ..-..-.|++|-..|..+-++.++.|+.++-||+++++..+.+++|.+.|.++.-
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~----~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQV----DAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVG 164 (325)
T ss_pred hhhhhhccchhhhhhcCcccc----CcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence 64332 111111111110000 0011226899999998877777779999999999999999999999999999998
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccc---------c-CCeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 015438 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---------L-EGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 278 s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~---------~-~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 347 (407)
- .....+++|+.||++|+||++ +++.+..+... . ..|-+++- +..+|+.|+ .-.+.+|++++
T Consensus 165 R-~~~~qilsG~EDGtvRvWd~k----t~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrs 236 (325)
T KOG0649|consen 165 R-NANGQILSGAEDGTVRVWDTK----TQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRS 236 (325)
T ss_pred c-ccCcceeecCCCccEEEEecc----ccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccC
Confidence 4 344457799999999999999 77777766432 1 23555655 556777655 67899999999
Q ss_pred CCCcccccCCCccccccceeeeCCCCCCccCCCCCcceEEEeCC
Q 015438 348 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (407)
Q Consensus 348 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh 391 (407)
.++...+.. ...+..+.|.. ..++..+.++.+.-|+-.
T Consensus 237 se~t~vfpi-----pa~v~~v~F~~-d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 237 SESTCVFPI-----PARVHLVDFVD-DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CCceEEEec-----ccceeEeeeec-ceEEEeccccceeeeeec
Confidence 988776532 22334444433 345555666677666533
No 158
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=4.1e-19 Score=151.30 Aligned_cols=242 Identities=13% Similarity=0.147 Sum_probs=172.9
Q ss_pred CCCEEEE---EeCCCeEEEEEcCC-CeEEeEeeeccccceEEEEEEECC-CCCeEEEEeCCCeEEEEECCCCceeccccc
Q 015438 135 DGSLFVA---GFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (407)
Q Consensus 135 ~~~~l~~---~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 209 (407)
+.+++|. ++..|...+.-+.. |+.-.......+|.++|..++|+| +...||+|+.|.+|.||.+..+.......-
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 3455554 23344555555432 333333345678999999999999 677889999999999999976654322210
Q ss_pred cccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEE
Q 015438 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG 288 (407)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~ 288 (407)
......||...|.-++|+|.. +.|++++.|.+|.+||+.+++.+..+. |..-|.+++|+ .+|.+|++.
T Consensus 123 ---------pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn-~dGs~l~Tt 191 (472)
T KOG0303|consen 123 ---------PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFN-RDGSLLCTT 191 (472)
T ss_pred ---------ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEec-cCCceeeee
Confidence 011234788899999999965 588999999999999999999988886 99999999998 999999999
Q ss_pred eCCCcEEEEeCcccCCCCceeeeeccccCC-eEEEEecCCCCEEEEEe---CCCcEEEEECCCCCCcccccCCCcccccc
Q 015438 289 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-ITFIDSRGDGRYLISNG---KDQAIKLWDIRKMSSNASCNLGFRSYEWD 364 (407)
Q Consensus 289 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (407)
+.|..|||||.| .++.+..-.+|.+. -..+-|-.+|..+-||- .+..+-+||-.+.+....+..- .....
T Consensus 192 ckDKkvRv~dpr----~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el--DtSnG 265 (472)
T KOG0303|consen 192 CKDKKVRVIDPR----RGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL--DTSNG 265 (472)
T ss_pred cccceeEEEcCC----CCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEe--ccCCc
Confidence 999999999999 88999888888763 34556777888444443 4788999999988776433210 11111
Q ss_pred ceeeeCCCCCCc--cCCCCCcceEEEeCCcc
Q 015438 365 YRWMDYPPQARD--LKHPCDQSVATYKGHSV 393 (407)
Q Consensus 365 v~~~~~~~~~~~--l~~~~~~~v~~~~gh~~ 393 (407)
|-.--|.++..+ |+..+|+.|+.|.-...
T Consensus 266 vl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 266 VLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 222223565544 45567888888875443
No 159
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=4.8e-19 Score=145.03 Aligned_cols=209 Identities=13% Similarity=0.188 Sum_probs=162.7
Q ss_pred cCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEe-Eee--eccccceEEEEEEECC--CCCeEEEEeCCCeEEEE
Q 015438 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ-KDI--LAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV 196 (407)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~--~~~~~~~~v~~~~~sp--~~~~l~~~~~dg~i~vw 196 (407)
.+-+.|.|+.|.|++..+++-. |..|.+|+++.+..+. ... ...++....++-+|+| +++.+++. .|+++..|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence 4567999999999999998875 7899999998875532 221 1123455788899999 67777775 57899999
Q ss_pred ECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCC-EEEEeeCCCeEEEEEcCCC-eeeeeeeccCCCeEE
Q 015438 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNT 274 (407)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~ 274 (407)
|+++......+. .+|...|..+.|+|+-+ +|++|+.||.|++||.+.. .++..+.+|...|.+
T Consensus 199 D~RT~~~~~sI~---------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 199 DLRTMKKNNSIE---------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred Eccchhhhcchh---------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 999765432221 24666899999999875 7889999999999999865 478889999999999
Q ss_pred EEecCCCCCEEEEEeCCCcEEEEeCcccC-------------------------CCCceeeeeccccCCeEEEEecCCC-
Q 015438 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLN-------------------------VKGKPAGVLMGHLEGITFIDSRGDG- 328 (407)
Q Consensus 275 i~~s~~~~~~l~s~~~d~~i~vwd~~~~~-------------------------~~~~~~~~~~~~~~~i~~~~~s~~~- 328 (407)
+.|+|...+++++|+.|..|.+|-..... .....+.++..|...|++++|+.-.
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 99999999999999999999999754111 1123445677899999999998754
Q ss_pred CEEEEEeCCCcEEEEECCC
Q 015438 329 RYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~~ 347 (407)
-.||+-+.||.+.|=.+..
T Consensus 344 WiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 344 WIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eeEEEeccCceEEeecCCh
Confidence 4567788999999877654
No 160
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=1.2e-19 Score=158.98 Aligned_cols=194 Identities=18% Similarity=0.257 Sum_probs=166.7
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCcee
Q 015438 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (407)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~ 204 (407)
-..++++.+||.+..++++.||.|.|||+.+...+. .+.+|...+.|+..++||..|-+|+.|.+|+-||++++...
T Consensus 510 paCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr---qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql 586 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR---QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL 586 (705)
T ss_pred hhhhhhhcCCccceeeeeccCCcEEEEEcccceeee---cccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh
Confidence 466888999999999999999999999999874444 46788888999999999999999999999999999987654
Q ss_pred ccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCE
Q 015438 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284 (407)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~ 284 (407)
.... ....|.++.++|++.++++|-+++.|.+......+. ..+..|.+.|.++.|+ ..|++
T Consensus 587 qqhd-----------------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlhlheScVLSlKFa-~cGkw 647 (705)
T KOG0639|consen 587 QQHD-----------------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLHLHESCVLSLKFA-YCGKW 647 (705)
T ss_pred hhhh-----------------hhhhheecccCCCccceeeecccCcEEEEecCCccc-eeecccccEEEEEEec-ccCce
Confidence 3322 234799999999999999999999999998765443 5566899999999998 89999
Q ss_pred EEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 015438 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (407)
Q Consensus 285 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~ 345 (407)
+++.+.|+.+..|... -+..+.... ..+.|.++..+.|.++|+||+.|..-.||.+
T Consensus 648 fvStGkDnlLnawrtP----yGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTP----YGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeecCchhhhhhccCc----cccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999987 666666554 4578999999999999999999988888875
No 161
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=9.4e-19 Score=149.12 Aligned_cols=213 Identities=17% Similarity=0.212 Sum_probs=166.8
Q ss_pred ccccCCCceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCeEE----eEeeeccccceEEEEEEECCC-CCeEEEEeCCCe
Q 015438 119 PVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPI 192 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~ 192 (407)
.+.+|+++|..++|+| +...||+|+.|.+|.||.+..+... .....+.+|...|--++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 5679999999999999 4567899999999999998654221 223456789999999999995 567889999999
Q ss_pred EEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCC-
Q 015438 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD- 271 (407)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~- 271 (407)
|.+|++.+++..-.+. |..-|.+++|+.+|.+|++.+.|..|+|||.++++.+..-.+|.+.
T Consensus 156 v~iWnv~tgeali~l~-----------------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k 218 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-----------------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK 218 (472)
T ss_pred EEEEeccCCceeeecC-----------------CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCC
Confidence 9999999997543322 5568999999999999999999999999999999998877777653
Q ss_pred eEEEEecCCCCCEEEEEe---CCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEe-CCCcEEEEECCC
Q 015438 272 VNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK 347 (407)
Q Consensus 272 v~~i~~s~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~dg~i~iwd~~~ 347 (407)
-..+.|- .++.++.||. .+..+-+||..+.. ..-....+. ..++|.---|.+|...+..+| .|+.|+-|.+.+
T Consensus 219 ~~Raifl-~~g~i~tTGfsr~seRq~aLwdp~nl~-eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 219 PARAIFL-ASGKIFTTGFSRMSERQIALWDPNNLE-EPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred cceeEEe-ccCceeeeccccccccceeccCccccc-CcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 3445565 6777555553 46789999987543 223333343 456787778899999887776 599999999988
Q ss_pred CCCc
Q 015438 348 MSSN 351 (407)
Q Consensus 348 ~~~~ 351 (407)
..+.
T Consensus 296 d~P~ 299 (472)
T KOG0303|consen 296 EPPF 299 (472)
T ss_pred CCce
Confidence 6643
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=1.6e-19 Score=150.31 Aligned_cols=234 Identities=11% Similarity=0.098 Sum_probs=171.3
Q ss_pred eccCCCCcccccCCCceEEEEECCCC-CEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeC
Q 015438 111 YLPVNGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (407)
Q Consensus 111 ~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 189 (407)
....+...-+.+|...|+.+.|.|+. +++++++.|..|++|++++..++...-...+|...|.++.|++++.+|++++.
T Consensus 122 ~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGm 201 (385)
T KOG1034|consen 122 VVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGM 201 (385)
T ss_pred cchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCC
Confidence 33444555678999999999999975 68889999999999999999888887788899999999999999999999999
Q ss_pred CCeEEEEECCCCceecccccc----ccccc-------eeeee-cCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEc-
Q 015438 190 SPIVHIVDVGSGTMESLANVT----EIHDG-------LDFSA-ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL- 256 (407)
Q Consensus 190 dg~i~vwd~~~~~~~~~~~~~----~~~~~-------~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~- 256 (407)
|.+|.+|++...+........ ..... ..|.. ....-|...|.|+.|- |+++++-+-++.|..|-.
T Consensus 202 Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pg 279 (385)
T KOG1034|consen 202 DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPG 279 (385)
T ss_pred cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecc
Confidence 999999999854432111110 00000 01111 1334578888888886 678999898999999987
Q ss_pred CCCe-------------eeeeeeccCCCeEEEEec-CCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEE
Q 015438 257 EANK-------------LSLRILAHTSDVNTVCFG-DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (407)
Q Consensus 257 ~~~~-------------~~~~~~~~~~~v~~i~~s-~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~ 322 (407)
+-.+ .+..+.-....+.-+.|+ ++-.+.|+.|...|.|.+||+++.+........-..-...|...
T Consensus 280 kl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~ 359 (385)
T KOG1034|consen 280 KLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQT 359 (385)
T ss_pred hhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeee
Confidence 2111 223333445566666654 25577899999999999999985543211111111224568999
Q ss_pred EecCCCCEEEEEeCCCcEEEEECC
Q 015438 323 DSRGDGRYLISNGKDQAIKLWDIR 346 (407)
Q Consensus 323 ~~s~~~~~l~s~~~dg~i~iwd~~ 346 (407)
+|+.||..|+..+.|++|.-||..
T Consensus 360 sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 360 SFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eecccCcEEEEEeCCCcEEEEEee
Confidence 999999999999999999999964
No 163
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=2.5e-20 Score=161.75 Aligned_cols=233 Identities=17% Similarity=0.230 Sum_probs=191.5
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCce
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~ 203 (407)
...-+.+.++.+|++++.|+..|.|..+|..++.....+.. ...|.++.|-.+.+++|++ ....++|||-..-+.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEE
Confidence 44567899999999999999999999999998754443322 2259999999998888886 457899999765554
Q ss_pred eccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCC
Q 015438 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (407)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~ 283 (407)
-++... ..|..+.|-|..-+|++++..|.+..-|+.+|+.+..+....+.+..++-+ |-.-
T Consensus 204 HClk~~------------------~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN-P~Na 264 (545)
T KOG1272|consen 204 HCLKRH------------------IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN-PYNA 264 (545)
T ss_pred eehhhc------------------CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC-Cccc
Confidence 444322 268889999999899999999999999999999999998888999999998 5566
Q ss_pred EEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccc
Q 015438 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (407)
Q Consensus 284 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (407)
.+-+|...|+|.+|... ...++..+..|.++|.+|++.++|+|++|+|.|..|+|||+++...+.+... -.
T Consensus 265 Vih~GhsnGtVSlWSP~----skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-----p~ 335 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPN----SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-----PH 335 (545)
T ss_pred eEEEcCCCceEEecCCC----CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-----CC
Confidence 88899999999999998 7788888999999999999999999999999999999999999987766533 23
Q ss_pred cceeeeCCCCCCccCCCCCcceEEEeC
Q 015438 364 DYRWMDYPPQARDLKHPCDQSVATYKG 390 (407)
Q Consensus 364 ~v~~~~~~~~~~~l~~~~~~~v~~~~g 390 (407)
+...+++|.. -+|+++.+..+.+|.+
T Consensus 336 ~a~~ls~Sqk-glLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 336 PASNLSLSQK-GLLALSYGDHVQIWKD 361 (545)
T ss_pred Cccccccccc-cceeeecCCeeeeehh
Confidence 3444555544 4667777788888864
No 164
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=2.4e-18 Score=142.27 Aligned_cols=206 Identities=14% Similarity=0.132 Sum_probs=159.7
Q ss_pred ceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEE
Q 015438 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (407)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 185 (407)
.+..-.+.......+..|..+|.|+.+++....+++|+.|+.|++||......... ......|.++.. .++.|+
T Consensus 76 ~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~----~d~~kkVy~~~v--~g~~Lv 149 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT----FDQGKKVYCMDV--SGNRLV 149 (323)
T ss_pred eEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccc----cccCceEEEEec--cCCEEE
Confidence 34444556666778889999999999999888999999999999999886322222 122236888876 577899
Q ss_pred EEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC----ee
Q 015438 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KL 261 (407)
Q Consensus 186 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~ 261 (407)
+|+.+..+.+||+++......... ....-.+.|+++-|++.-+++++-||.|.+=.+... +.
T Consensus 150 Vg~~~r~v~iyDLRn~~~~~q~re--------------S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRNLDEPFQRRE--------------SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred EeecCceEEEEEcccccchhhhcc--------------ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhh
Confidence 999999999999987654221110 112337899999998888999999999988777655 33
Q ss_pred eeeeeccC---------CCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEE
Q 015438 262 SLRILAHT---------SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI 332 (407)
Q Consensus 262 ~~~~~~~~---------~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 332 (407)
...|+.|. -+|++|+|+| -...|+||+.||.|.+||+. ..+.+..+......|.+++|+.+|..||
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~----~rKrl~q~~~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLF----NRKRLKQLAKYETSISSLSFSMDGSLLA 290 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccCc----chhhhhhccCCCCceEEEEeccCCCeEE
Confidence 44555553 2689999994 46689999999999999998 7788888877777899999999999999
Q ss_pred EEeC
Q 015438 333 SNGK 336 (407)
Q Consensus 333 s~~~ 336 (407)
+++.
T Consensus 291 ia~s 294 (323)
T KOG1036|consen 291 IASS 294 (323)
T ss_pred EEec
Confidence 9874
No 165
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=2.5e-19 Score=159.20 Aligned_cols=224 Identities=12% Similarity=0.243 Sum_probs=178.0
Q ss_pred cccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCC-----CeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCe
Q 015438 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 192 (407)
..+..|...|..++|.|....|++++.||.|++|+++. ...+.....+..|.++|.|+++.+++..+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 36678999999999999999999999999999999933 2345556678899999999999999999999999999
Q ss_pred EEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeee------
Q 015438 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL------ 266 (407)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------ 266 (407)
|+.|++....- . ....+. ..-.....||...|+.+++++....|++++.||+++.|+.....+ ..+.
T Consensus 368 I~~w~~p~n~d-p----~ds~dp-~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g 440 (577)
T KOG0642|consen 368 IRCWNLPPNQD-P----DDSYDP-SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHG 440 (577)
T ss_pred eeeeccCCCCC-c----ccccCc-chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccC
Confidence 99998862211 0 000000 011122347999999999999998999999999999998764433 0000
Q ss_pred ----------------------------------------------ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCc
Q 015438 267 ----------------------------------------------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (407)
Q Consensus 267 ----------------------------------------------~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~ 300 (407)
.-...+..+.++ +...+.+++..|+.|+++|..
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~-~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH-PTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec-CCCCeeEecccCCceeccccc
Confidence 001234566676 666888999999999999998
Q ss_pred ccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCccc
Q 015438 301 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (407)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (407)
.+.++.....|...++++++.|+|-+|++++.||.+++|.+....+...
T Consensus 520 ----~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 520 ----TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred ----ccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 8999999999999999999999999999999999999999987655543
No 166
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.83 E-value=2.5e-18 Score=159.89 Aligned_cols=277 Identities=14% Similarity=0.119 Sum_probs=197.2
Q ss_pred cceeeeeccCCCCcccccCCCceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCeEE--e-EeeeccccceEEEEEEECCC
Q 015438 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKI--Q-KDILAKSLRWTVTDTSLSPD 180 (407)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~--~-~~~~~~~~~~~v~~~~~sp~ 180 (407)
..++|.+.....+...-.-...|.|++|+|. ..++|.|..+|+|.+||+..+... . .......|..+++.+.|..+
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 4566666655666666677899999999994 567888889999999999876431 1 11234567888999999765
Q ss_pred CC--eEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCC-CCEEEEeeCCCeEEEEEcC
Q 015438 181 QR--HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLE 257 (407)
Q Consensus 181 ~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~ 257 (407)
.. -+++++.||.|..|+++.-............ ............+++++|.+. -..+++|+.+|.|+.-+-.
T Consensus 303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~----~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK----KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred CCCCceEEEecCCcEeeeeccccccchhhcccccc----cccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 44 4999999999999987643321111111000 000011123347899999984 4689999999998874433
Q ss_pred CCe--------eeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCC-
Q 015438 258 ANK--------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG- 328 (407)
Q Consensus 258 ~~~--------~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~- 328 (407)
..+ ....+..|.++|.++.++|-...++++++ |.+++||.... ...++..+..+...|++++|||..
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~---~~~Pl~~~~~~~~~v~~vaWSptrp 454 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDV---IASPLLSLDSSPDYVTDVAWSPTRP 454 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccC---CCCcchhhhhccceeeeeEEcCcCc
Confidence 221 23345578999999999987777777777 99999999752 456777787788889999999965
Q ss_pred CEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCC-cceEEEeCC
Q 015438 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD-QSVATYKGH 391 (407)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~v~~~~gh 391 (407)
..|+++..||.|.+||+......+....... ......+.+++.+++|++++. +.+.+|+-.
T Consensus 455 avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 455 AVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred eEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 5677788899999999998766655433222 556677888999999998864 677777653
No 167
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5.9e-19 Score=146.20 Aligned_cols=194 Identities=19% Similarity=0.134 Sum_probs=154.2
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeE
Q 015438 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251 (407)
Q Consensus 172 v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 251 (407)
..|+.|++.|.+||+|+.+|.|.|||+.+......+ .+|..+|++++||++|+.|++++.|..|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l----------------saH~~pi~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML----------------SAHVRPITSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhh----------------hccccceeEEEecCCCCEeeeecCCcee
Confidence 678999999999999999999999999987644333 2577799999999999999999999999
Q ss_pred EEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccc------cCCeEEEEec
Q 015438 252 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSR 325 (407)
Q Consensus 252 ~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~------~~~i~~~~~s 325 (407)
.+||+..+.++..+. ..++|....|+|.+.+..++.-.+..-.+-++. . +.+.+... .....+..|.
T Consensus 90 ~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s----~--~~h~~Lp~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS----D--PKHSVLPKDDDGDLNSSASHGVFD 162 (405)
T ss_pred EEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEec----C--CceeeccCCCcccccccccccccc
Confidence 999999999988885 678999999998888887777666666666664 2 11111111 1112233589
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCC-CCCcceEEEeCC
Q 015438 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH-PCDQSVATYKGH 391 (407)
Q Consensus 326 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~v~~~~gh 391 (407)
+.|+++++|...|.+.++|..+.+++..+... ....|..+-|+-.|+.+.. ..|+.|++|...
T Consensus 163 r~g~yIitGtsKGkllv~~a~t~e~vas~rit---s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 163 RRGKYIITGTSKGKLLVYDAETLECVASFRIT---SVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred CCCCEEEEecCcceEEEEecchheeeeeeeec---hheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 99999999999999999999999887765322 2467888889988877665 579999999864
No 168
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=141.20 Aligned_cols=269 Identities=14% Similarity=0.187 Sum_probs=188.1
Q ss_pred ccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC
Q 015438 112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (407)
Q Consensus 112 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 191 (407)
.|..+.+++..|.+.|+++.|..+++ |.+|...|.|++|++.+.+...... ..+...|+.+.--|+ ..|.+-+.|+
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r--~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIR--LFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhh--hhccceeeceeecCC-cchhhcCCCc
Confidence 35566778889999999999998876 8889999999999998864443221 135567888888887 5688889999
Q ss_pred eEEEEECCCCceeccccccccccce-ee------------------------------------eecCCCCccccEEEEE
Q 015438 192 IVHIVDVGSGTMESLANVTEIHDGL-DF------------------------------------SAADDGGYSFGIFSLK 234 (407)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~-~~------------------------------------~~~~~~~~~~~v~~~~ 234 (407)
.+.+|++.-+....+..+...+-++ .+ ...+..+..+.+.|..
T Consensus 78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 9999999764332221110000000 00 0000112344566666
Q ss_pred EeC-CCC--EEEEeeCCCeEEEEEcCCCeee----------eeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcc
Q 015438 235 FST-DGR--ELVAGSSDDCIYVYDLEANKLS----------LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 301 (407)
Q Consensus 235 ~s~-~~~--~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~ 301 (407)
+.. .+. ++++|-++|.|.+||+.++..+ .....|..+|.++.+. +.-+.=++|+.+..+..|.+..
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya-s~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA-SSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec-hhhcCCcCCCccccceeeeecc
Confidence 443 233 5777889999999999987433 3334689999999996 4444456788888999999863
Q ss_pred cCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCC-
Q 015438 302 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP- 380 (407)
Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 380 (407)
.....+.-....-...+|..+...||++.+||+|.|+.||||+-+++.++... +-|...+.+++|+|+..+++.+
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL----kyHsagvn~vAfspd~~lmAaas 312 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL----KYHSAGVNAVAFSPDCELMAAAS 312 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh----hhhhcceeEEEeCCCCchhhhcc
Confidence 21111211222223457889999999999999999999999999999988764 4556789999999997777655
Q ss_pred CCcceEEEe
Q 015438 381 CDQSVATYK 389 (407)
Q Consensus 381 ~~~~v~~~~ 389 (407)
.|..|..|+
T Consensus 313 kD~rISLWk 321 (323)
T KOG0322|consen 313 KDARISLWK 321 (323)
T ss_pred CCceEEeee
Confidence 578888886
No 169
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=3.1e-18 Score=142.35 Aligned_cols=251 Identities=13% Similarity=0.087 Sum_probs=190.7
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEEC-CCC
Q 015438 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 201 (407)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~-~~~ 201 (407)
...+|+|.+|++|+..+|++.....|.||...........-....|...|+.+.|+|..+.|++++.|..-+||.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 4578999999999999999999999999998877544555567789999999999999999999999999999998 444
Q ss_pred ceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeee----eeeeccCCCeEEEEe
Q 015438 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS----LRILAHTSDVNTVCF 277 (407)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~i~~ 277 (407)
+......+.. ++...+++.|+|..+.|++|+.-..|.||-++...-- ..-..+.+.|.++.|
T Consensus 89 ~WkptlvLlR--------------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW 154 (361)
T KOG1523|consen 89 TWKPTLVLLR--------------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW 154 (361)
T ss_pred eeccceeEEE--------------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec
Confidence 4443333322 4447999999999999999999999999988754321 112256788999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCcccC--------------CCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 015438 278 GDESGHLIYSGSDDNLCKVWDRRCLN--------------VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (407)
Q Consensus 278 s~~~~~~l~s~~~d~~i~vwd~~~~~--------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw 343 (407)
+ +++-+|++|+.|+.+|||..--.. .-+..+..+....+.|..+.|+|+|..|+-.+.|..+.+=
T Consensus 155 h-pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 155 H-PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred c-CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 8 788899999999999999753100 1122333343456789999999999999999999999999
Q ss_pred ECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCCcceEEEeCC
Q 015438 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (407)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh 391 (407)
|-....+.... ......+...+.|-.+..+++.+.|-.-..|...
T Consensus 234 da~~p~~~v~~---~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~~ 278 (361)
T KOG1523|consen 234 DAAGPSERVQS---VATAQLPLLSVSWISENSVVAAGYDCGPVLFVTD 278 (361)
T ss_pred ecCCCchhccc---hhhccCCceeeEeecCCceeecCCCCCceEEEec
Confidence 98876532211 2233367777777777777777766444444433
No 170
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.8e-19 Score=172.41 Aligned_cols=212 Identities=16% Similarity=0.155 Sum_probs=169.5
Q ss_pred ccccCCCceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC-CCeEEEEeCCCeEEEE
Q 015438 119 PVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIV 196 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~i~vw 196 (407)
....|++.|..+.|++.+. +||+|+.||.|.|||+.+-......- .......|.+++|+.. ...|++++.+|.+.||
T Consensus 111 ~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iW 189 (1049)
T KOG0307|consen 111 TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIW 189 (1049)
T ss_pred hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceec
Confidence 4578999999999999765 99999999999999998742222211 1223456999999874 5677888999999999
Q ss_pred ECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCC-EEEEeeCCC---eEEEEEcCCC-eeeeeeeccCCC
Q 015438 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDD---CIYVYDLEAN-KLSLRILAHTSD 271 (407)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg---~i~i~d~~~~-~~~~~~~~~~~~ 271 (407)
|++..+.+ +.+... +....+..++|+|++. .|++++.|. .|.+||++.- .+++.+++|...
T Consensus 190 Dlr~~~pi--i~ls~~------------~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G 255 (1049)
T KOG0307|consen 190 DLRKKKPI--IKLSDT------------PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG 255 (1049)
T ss_pred cccCCCcc--cccccC------------CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccc
Confidence 99977543 222211 1113588999999874 677776654 6999999864 467778899999
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCC-EEEEEeCCCcEEEEECCCCC
Q 015438 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMS 349 (407)
Q Consensus 272 v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~ 349 (407)
|.++.|++.|.++|++++.|+.|.+|+.. +++.+..+.....++..+.|.|... .|+.++-||.|.||.+....
T Consensus 256 ilslsWc~~D~~lllSsgkD~~ii~wN~~----tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSGKDNRIICWNPN----TGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeccCCCCchhhhcccCCCCeeEecCC----CceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999998888999999999999999998 8899999988888999999999665 78888899999999998765
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=156.84 Aligned_cols=260 Identities=18% Similarity=0.246 Sum_probs=198.0
Q ss_pred CCceeccccccceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEE
Q 015438 95 GRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 174 (407)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 174 (407)
+...+.++++...+.+.-.+.....+.+|...|+|++|+.||+++|+|+.|..|.+|+..-. -.....|...|.|
T Consensus 24 GsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-----G~LkYSH~D~IQC 98 (1081)
T KOG1538|consen 24 GTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-----GILKYSHNDAIQC 98 (1081)
T ss_pred CceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-----ceeeeccCCeeeE
Confidence 34445667777777777778888999999999999999999999999999999999986532 2234568889999
Q ss_pred EEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEE
Q 015438 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (407)
Q Consensus 175 ~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 254 (407)
+.|+|-...|++++.+ ..-+|........... ....|.+++|..||++++.|-.||+|.+-
T Consensus 99 MsFNP~~h~LasCsLs-dFglWS~~qK~V~K~k------------------ss~R~~~CsWtnDGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 99 MSFNPITHQLASCSLS-DFGLWSPEQKSVSKHK------------------SSSRIICCSWTNDGQYLALGMFNGTISIR 159 (1081)
T ss_pred eecCchHHHhhhcchh-hccccChhhhhHHhhh------------------hheeEEEeeecCCCcEEEEeccCceEEee
Confidence 9999999999998764 3568887655433221 12268999999999999999999999998
Q ss_pred EcCCCeeeeeee---ccCCCeEEEEecCCCC----CEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCC
Q 015438 255 DLEANKLSLRIL---AHTSDVNTVCFGDESG----HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (407)
Q Consensus 255 d~~~~~~~~~~~---~~~~~v~~i~~s~~~~----~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 327 (407)
+- +++....+. +...+|.+|+|+|..+ .+++......++.+|.+ .++.+..-+...-...++++-++
T Consensus 160 Nk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-----sG~~Igk~r~L~FdP~CisYf~N 233 (1081)
T KOG1538|consen 160 NK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-----SGKQIGKDRALNFDPCCISYFTN 233 (1081)
T ss_pred cC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-----cceeecccccCCCCchhheeccC
Confidence 64 344444444 4678999999997554 57888888889999988 56766655545556678999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCC-CcceEEEe
Q 015438 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYK 389 (407)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~v~~~~ 389 (407)
|.+++.||.|+.+.+|-- .+-.+.+.-. ...+.|. ++..|+++.++.++ |+++.-|.
T Consensus 234 GEy~LiGGsdk~L~~fTR-~GvrLGTvg~-~D~WIWt---V~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 234 GEYILLGGSDKQLSLFTR-DGVRLGTVGE-QDSWIWT---VQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CcEEEEccCCCceEEEee-cCeEEeeccc-cceeEEE---EEEccCCceEEEEEccCeeehhh
Confidence 999999999999999973 3333333311 4455555 45678888877764 78888775
No 172
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.2e-17 Score=158.50 Aligned_cols=264 Identities=17% Similarity=0.161 Sum_probs=189.4
Q ss_pred cCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC--CCCeEEEEeCCCeEEEEECC
Q 015438 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVG 199 (407)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~dg~i~vwd~~ 199 (407)
+...+-..+.|+|-...++++.....|+|||.+.+..+............|+.+.+-. |..++++++.||.|+||+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 3445677889999999999998778999999998876655444444455688888855 56789999999999999754
Q ss_pred CCc--eeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeee-ccCCCeEEEE
Q 015438 200 SGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVC 276 (407)
Q Consensus 200 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~ 276 (407)
... ...+........+... ...... .-+.|.....+|++++.-..|+|||....+++..+. +....|+++.
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~-----~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLP-----GARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred ccccCCceeEEeeccccccCc-----cCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec
Confidence 321 1111111111011000 001111 346788766677777778899999999877776654 3445678887
Q ss_pred ecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCC--eEEEEecCCCCE-EEEEeCCCcEEEEECCCCCCccc
Q 015438 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG--ITFIDSRGDGRY-LISNGKDQAIKLWDIRKMSSNAS 353 (407)
Q Consensus 277 ~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~ 353 (407)
-+-..|+++++|..||.|++||.|... ....+...+.|... |..+.+.+.|-- |++|+.||.|++||+|+. ...+
T Consensus 1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~-~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~ 1293 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAP-PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKET 1293 (1387)
T ss_pred ccccCCceEEEeecCCceEEeecccCC-ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-cccc
Confidence 765678999999999999999999654 23567788888877 999999887754 999999999999999985 2222
Q ss_pred ccCCCccc--cccceeeeCCCCCCccCCCCCcceEEEeCCcc
Q 015438 354 CNLGFRSY--EWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 393 (407)
Q Consensus 354 ~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh~~ 393 (407)
+....... +...++|..+++..++++++.+.+++|+-...
T Consensus 1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGE 1335 (1387)
T ss_pred cceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChh
Confidence 22212222 23589999999999999999999999986543
No 173
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=3.5e-18 Score=148.25 Aligned_cols=254 Identities=16% Similarity=0.184 Sum_probs=180.3
Q ss_pred CCcccccCCCceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEE
Q 015438 116 GPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (407)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~ 194 (407)
....+..|..+|.++.|+|. -..+++.+.||+|++-|++++. .............+.++.|+.+...++++..=|...
T Consensus 226 ~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~ 304 (498)
T KOG4328|consen 226 GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI-SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFN 304 (498)
T ss_pred ceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchh-hHHHhhcCccceeeeeccccCCCccEEEeecccceE
Confidence 33456789999999999995 4678899999999999998752 112222222344578889999888888888878999
Q ss_pred EEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCCe----eeeeeeccC
Q 015438 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANK----LSLRILAHT 269 (407)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~ 269 (407)
+||++++...... + . -|...|.+++++|-. .+|++++.|++++|||++.-. ++.....|.
T Consensus 305 ~iD~R~~~s~~~~-~-~-------------lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr 369 (498)
T KOG4328|consen 305 VIDLRTDGSEYEN-L-R-------------LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR 369 (498)
T ss_pred EEEeecCCccchh-h-h-------------hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccc
Confidence 9999876542111 0 0 144479999999955 589999999999999998642 234445899
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccC------CeEEEEecCCCCEEEEEeCCCcEEEE
Q 015438 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE------GITFIDSRGDGRYLISNGKDQAIKLW 343 (407)
Q Consensus 270 ~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~s~~~dg~i~iw 343 (407)
..|.+..|||.++. |+|.+.|..|+|||..+......+...+. |.. ......|.|+..++++|..-..|-|+
T Consensus 370 rsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~ 447 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVF 447 (498)
T ss_pred ceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEE
Confidence 99999999977777 88999999999999853322344444443 221 23456799999999999999999999
Q ss_pred ECCCCCCcccccCCCccccccce-eeeCCCCCCccCCCC--CcceEEEeC
Q 015438 344 DIRKMSSNASCNLGFRSYEWDYR-WMDYPPQARDLKHPC--DQSVATYKG 390 (407)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~--~~~v~~~~g 390 (407)
|-..++.+..+ +......|. -..|+|-+..++++. .+.|.+|..
T Consensus 448 ~~~~~q~v~el---~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 448 DGNGGQMVCEL---HDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cCCCCEEeeec---cCccccccccceeecccccceeccCCccceEEEEec
Confidence 98877655443 222222222 235788877555554 455666644
No 174
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=3.5e-19 Score=164.79 Aligned_cols=238 Identities=17% Similarity=0.281 Sum_probs=180.6
Q ss_pred ccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 015438 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~ 198 (407)
.+.+|...|+|+.|...|.++++|+.|..++||..+++.++. ...+|.+.|+.++.+.+..++++++.|..|++|.+
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 456899999999999999999999999999999999885554 57889999999999999999999999999999999
Q ss_pred CCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCe--------------eeee
Q 015438 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--------------LSLR 264 (407)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~ 264 (407)
..+....++. ||++.|++++|+|-. +.+.||++++||.+-.- .+..
T Consensus 262 ~~~~pvsvLr----------------ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s 321 (1113)
T KOG0644|consen 262 PDGAPVSVLR----------------GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDS 321 (1113)
T ss_pred CCCchHHHHh----------------ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceee
Confidence 9998776654 688999999999965 67889999999987110 0000
Q ss_pred ee----------------ccCCCeEEEEecCCCC-----------CEEEEEeCCCcEEEEeCcccCCCCceeeeeccccC
Q 015438 265 IL----------------AHTSDVNTVCFGDESG-----------HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317 (407)
Q Consensus 265 ~~----------------~~~~~v~~i~~s~~~~-----------~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 317 (407)
+. +......+++|. ... .+.+++-.+..+++|++. .+..+..+.+|..
T Consensus 322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~-~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~----~g~l~H~l~ghsd 396 (1113)
T KOG0644|consen 322 ILFENNGDRFLTGSRDGEARNHEFEQLAWR-SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY----TGQLLHNLMGHSD 396 (1113)
T ss_pred eeccccccccccccCCcccccchhhHhhhh-ccceEEEeccccccccceeeeeeeEeeeeecc----cchhhhhhccccc
Confidence 00 001111222222 222 233344455678888887 8888889999999
Q ss_pred CeEEEEecC-CCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCC-cceEEE
Q 015438 318 GITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD-QSVATY 388 (407)
Q Consensus 318 ~i~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~v~~~ 388 (407)
.+..+.++| +.+...+++.||...|||+-.+.+......+ ...+..-.||++|.-++.+.+ +.+.++
T Consensus 397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g----h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG----HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc----cceeeccccCCCCceEecCCCCCceEEe
Confidence 999999999 4556678999999999999998887765432 233344579999977776655 555555
No 175
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=3.2e-17 Score=138.91 Aligned_cols=236 Identities=14% Similarity=0.190 Sum_probs=177.8
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCC--CeEEEEECCCC
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHIVDVGSG 201 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--g~i~vwd~~~~ 201 (407)
...+..+.|+.+...|..|+.|| -++|+.+.-.+.. ........|..+-|+.. ++|..+.+ ..+++++++.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccC
Confidence 45677788999999999999887 6888876543211 11222335666777654 55555443 35899998877
Q ss_pred ceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeec---cCCCeEEEEec
Q 015438 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVNTVCFG 278 (407)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~i~~s 278 (407)
..+...... ..|.++.++. +.|+++-++. |+|||+++.+.+.++.. +...+.+++++
T Consensus 79 ~~ICe~~fp-----------------t~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n 138 (391)
T KOG2110|consen 79 TTICEIFFP-----------------TSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPN 138 (391)
T ss_pred ceEEEEecC-----------------CceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccC
Confidence 766554432 2788899864 4677776654 99999999999888753 44456666665
Q ss_pred CCCCCEEEEEe--CCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCc-EEEEECCCCCCccccc
Q 015438 279 DESGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IKLWDIRKMSSNASCN 355 (407)
Q Consensus 279 ~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~ 355 (407)
..+.+++-=+ ..|.|.+||.. +.+++..+..|.+.+.+++|+++|.+|||+++.|+ |||+.+.+++.+.++.
T Consensus 139 -~~n~ylAyp~s~t~GdV~l~d~~----nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR 213 (391)
T KOG2110|consen 139 -NANCYLAYPGSTTSGDVVLFDTI----NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR 213 (391)
T ss_pred -CCCceEEecCCCCCceEEEEEcc----cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence 4455666432 35899999998 88999999999999999999999999999999998 8999999999999987
Q ss_pred CCCccccccceeeeCCCCCCccCCC-CCcceEEEeCCc
Q 015438 356 LGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYKGHS 392 (407)
Q Consensus 356 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~gh~ 392 (407)
.+.. -..+..++|+|++.+|++. +.++|++|+-..
T Consensus 214 RG~~--~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 214 RGTY--PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CCce--eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 6654 5678899999999999764 569999998543
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5e-18 Score=142.24 Aligned_cols=200 Identities=16% Similarity=0.238 Sum_probs=153.5
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC--CCCeEEEEeCCCeEEEEECCCCceecccccccccc
Q 015438 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (407)
Q Consensus 137 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 214 (407)
..+|++...|.|++||..++..+.. ++.+...+..+.|.. ....+.+++.||+|++||+++......+......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~---fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE---FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe---ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence 5688888999999999999765554 444555677888866 4567889999999999999987665544432211
Q ss_pred ceeeeecCCCCccccEEEEEEeCCCCEEEEeeC----CCeEEEEEcCCCee-eee-eeccCCCeEEEEecCCCCCEEEEE
Q 015438 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEANKL-SLR-ILAHTSDVNTVCFGDESGHLIYSG 288 (407)
Q Consensus 215 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~-~~~~~~~v~~i~~s~~~~~~l~s~ 288 (407)
..+..+++.+-.++.+++|+. +-.|.+||.+..+. +.. ...|...|++++|+|.+.++|++|
T Consensus 117 ------------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 117 ------------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred ------------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 125667777667788888864 56799999998765 444 357999999999999999999999
Q ss_pred eCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCC-CEEEEEeCCCcEEEEECCCCCCccc
Q 015438 289 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNAS 353 (407)
Q Consensus 289 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (407)
+.||.|.+||+...+ ....+...-.|.+.|..+.|..++ +.|.+-+..++..+|+++.+++...
T Consensus 185 SvDGLvnlfD~~~d~-EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~ 249 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDN-EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW 249 (376)
T ss_pred cccceEEeeecCCCc-chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence 999999999997443 223333344578889999998877 4588888899999999998875543
No 177
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=1.1e-17 Score=143.19 Aligned_cols=175 Identities=19% Similarity=0.209 Sum_probs=133.3
Q ss_pred CCceEEEEECCCCC-EEEEEeCCCeEEEEEcCCC------eEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEE
Q 015438 124 TSRAYVSQFSADGS-LFVAGFQASQIRIYDVERG------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (407)
Q Consensus 124 ~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vw 196 (407)
..+|..+.|.++.. .+|+|+.|..|+||-+..+ ..+.....+..|...|+++.|+|+|..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56899999999876 9999999999999987543 2444455677889999999999999999999999999999
Q ss_pred ECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEE
Q 015438 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (407)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 276 (407)
-...-.......-...............+|...|..++|+|++.++++++.|..+++||+..|+....+..|...|..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 87631110000000000000111122345888999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEeC
Q 015438 277 FGDESGHLIYSGSDDNLCKVWDR 299 (407)
Q Consensus 277 ~s~~~~~~l~s~~~d~~i~vwd~ 299 (407)
|. +.++++++-+.|...+++++
T Consensus 173 wD-pl~qyv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 173 WD-PLNQYVASKSSDRHPEGFSA 194 (434)
T ss_pred cc-hhhhhhhhhccCcccceeee
Confidence 95 77777777777765555443
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=6.7e-18 Score=143.89 Aligned_cols=215 Identities=16% Similarity=0.136 Sum_probs=165.3
Q ss_pred ccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCe--EEeE--eeeccccceEEEEEEECCCCCeEEEEeCCCeEE
Q 015438 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--KIQK--DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~--~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~ 194 (407)
-+.+|.+.|+++.||.++++||+|+.|..+++|+++... +..+ ......|...|.|++|....+++.+|..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 457899999999999999999999999999999986421 1111 123445678899999999999999999999999
Q ss_pred EEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCe-ee--eeeeccCCC
Q 015438 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LS--LRILAHTSD 271 (407)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~--~~~~~~~~~ 271 (407)
.-|+++.+.+.+.... ...+.|..+..+|..+.|++.+.++.|.+||.+... +. ..+......
T Consensus 131 ~HDiEt~qsi~V~~~~--------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~ 196 (609)
T KOG4227|consen 131 KHDIETKQSIYVANEN--------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKN 196 (609)
T ss_pred eeecccceeeeeeccc--------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcc
Confidence 9999998876555422 244589999999999999999999999999998765 22 222234566
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeee---ccccC---CeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 015438 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL---MGHLE---GITFIDSRGDGRYLISNGKDQAIKLWDI 345 (407)
Q Consensus 272 v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~---~i~~~~~s~~~~~l~s~~~dg~i~iwd~ 345 (407)
...+.|+|..+.+|++.+..+-+-+||+|.. ..++... .+... .-.++.|+|+|+.|++--....-.+||+
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~---~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQ---ARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeeccc---cchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 7889999999999999999999999999843 2222222 12211 2256779999999988777777777887
Q ss_pred CCCCC
Q 015438 346 RKMSS 350 (407)
Q Consensus 346 ~~~~~ 350 (407)
.+..+
T Consensus 274 ~S~R~ 278 (609)
T KOG4227|consen 274 ISQRC 278 (609)
T ss_pred ecccc
Confidence 76444
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=2.6e-17 Score=135.06 Aligned_cols=254 Identities=16% Similarity=0.218 Sum_probs=176.3
Q ss_pred CceEEEEECC--C-CCEEEEEeC----CCeEEEEEcCC--CeEEeEeeeccccceEEEEEEECCCCC-----eEEEEeCC
Q 015438 125 SRAYVSQFSA--D-GSLFVAGFQ----ASQIRIYDVER--GWKIQKDILAKSLRWTVTDTSLSPDQR-----HLVYASMS 190 (407)
Q Consensus 125 ~~v~~~~~s~--~-~~~l~~~~~----dg~i~iwd~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~-----~l~~~~~d 190 (407)
-.++++.|+. + +.+||.|+. .+.|.|..++. ++.+.. ....|..+++.+.|.|+.. +||+++
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~--a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-- 120 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED--ANFDHPYPVTKLMWIPDSKGVYPDLLATSS-- 120 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc--CCCCCCCCccceEecCCccccCcchhhccc--
Confidence 4577888884 2 346888764 45677766543 322222 2246888999999999863 555543
Q ss_pred CeEEEEECCCC--ceeccccccccccceeeeecCCCCccccEEEEEEeC-CCCEEEEeeCCCeEEEEEcCCCe---eeee
Q 015438 191 PIVHIVDVGSG--TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK---LSLR 264 (407)
Q Consensus 191 g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~ 264 (407)
..+++|.+... ....... +..+....+..++++..|+. +.++|.+.+-|.+..|||++++. ....
T Consensus 121 D~LRlWri~~ee~~~~~~~~---------L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQSV---------LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred CeEEEEeccCcCCceehhhh---------hccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 57999998743 2111111 11112234566899999997 66799999999999999999863 3556
Q ss_pred eeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecC-CCCEEEEEeCCC-cEEE
Q 015438 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQ-AIKL 342 (407)
Q Consensus 265 ~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~dg-~i~i 342 (407)
+-+|...|..|+|....-+.|++.+.||.+|+||+|... ....+..-.....+...++|++ |-+++||-..|. .|.|
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le-HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i 270 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE-HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI 270 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc-cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence 779999999999986567899999999999999999543 1222222222245788899987 557888877654 5999
Q ss_pred EECCCCCCcccccCCCccccccceeeeCCCCC--CccCCCCCcceEEEeCCccce
Q 015438 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA--RDLKHPCDQSVATYKGHSVLR 395 (407)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~~v~~~~gh~~~~ 395 (407)
-|+|.......- ...|...|..+++.|.. .+.++++|...-+|+-++..+
T Consensus 271 LDiR~P~tpva~---L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 271 LDIRVPCTPVAR---LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred EEecCCCcceeh---hhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 999986544332 55677778888887774 555667788888898776533
No 180
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.7e-18 Score=146.96 Aligned_cols=197 Identities=17% Similarity=0.197 Sum_probs=150.1
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccc
Q 015438 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (407)
Q Consensus 128 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 207 (407)
.+++|+++|..+++|+.||.+|||+..+.. .......|...|.++.|+||+++|++-+.| ..+||+++++......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~---t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML---TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch---hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 789999999999999999999999976642 223455677789999999999999999999 8999999998544333
Q ss_pred cccccccceeeeecCCCCccccEEEEEEeCCC---C--EEEEeeCCCeEEEEEcCCCee-----eeeeeccCCCeEEEEe
Q 015438 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG---R--ELVAGSSDDCIYVYDLEANKL-----SLRILAHTSDVNTVCF 277 (407)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~--~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~i~~ 277 (407)
.... ....+..+.|+.++ . .++....-+.|..||+...+. ..+.......|+++++
T Consensus 224 t~~~--------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 224 TPFS--------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred CCcc--------------cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 2111 11245667888776 3 233334456677777654332 1112223457999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCcccCCCCceee-eeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 015438 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 278 s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 347 (407)
+ ++|++++.|+.||.|-|++.. +.+.++ ..+.|...|+.+.|+||.+++++.+.|....|..+.-
T Consensus 290 S-~dGkf~AlGT~dGsVai~~~~----~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 290 S-DDGKFLALGTMDGSVAIYDAK----SLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred c-CCCcEEEEeccCCcEEEEEec----eeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 8 999999999999999999997 555544 3457999999999999999999999999999888765
No 181
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.1e-17 Score=148.43 Aligned_cols=234 Identities=14% Similarity=0.237 Sum_probs=169.8
Q ss_pred CCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC--CCCeEEEEeCCCe
Q 015438 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPI 192 (407)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~dg~ 192 (407)
.....+.||++-|+|+.|+.+|.+|++|+.|-.+.|||.-..+.+.. ...+|...|.++.|-| +.+.+++|..|..
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs--I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS--ISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee--eecccccceeEEeeeccCCCeEEEeccCcce
Confidence 34567899999999999999999999999999999999886544443 4567888999999999 5778899999999
Q ss_pred EEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCCeee---------
Q 015438 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLS--------- 262 (407)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~--------- 262 (407)
|+++|+...+....-. +......-...|...|..++-.|++ +.+.++++||+|+-+|++....-
T Consensus 119 i~lfdl~~~~~~~~d~------~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~ 192 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDH------GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI 192 (758)
T ss_pred EEEEeccccccccccc------CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence 9999998533211100 0011111122467788899999988 78999999999999999863211
Q ss_pred -eeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccC--------------CCCceeeeec-ccc----------
Q 015438 263 -LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN--------------VKGKPAGVLM-GHL---------- 316 (407)
Q Consensus 263 -~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~--------------~~~~~~~~~~-~~~---------- 316 (407)
..+...--...++.++|.+..+|++|+.|-..++||.|... ....++.-+. +|.
T Consensus 193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~ 272 (758)
T KOG1310|consen 193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRY 272 (758)
T ss_pred HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccc
Confidence 11111223467899999999999999999999999955110 0111222221 221
Q ss_pred -CCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccC
Q 015438 317 -EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (407)
Q Consensus 317 -~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (407)
..++-+.|+|+|.-|+..-....|+++|+...+....+..
T Consensus 273 ~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~ 313 (758)
T KOG1310|consen 273 ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFL 313 (758)
T ss_pred eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecC
Confidence 1256778999998888777777899999999887665543
No 182
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=9e-18 Score=151.29 Aligned_cols=205 Identities=21% Similarity=0.249 Sum_probs=152.2
Q ss_pred ECCCCCEEEE--EeCCCeEEEEEcCCCeEEeEe-eeccccceEEEEEEECC-CCCeEEEEeCCCeEEEEECCCCceeccc
Q 015438 132 FSADGSLFVA--GFQASQIRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLA 207 (407)
Q Consensus 132 ~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 207 (407)
|+.+..++|+ ++..|.|-||++....++..- .........|+++.|.| |...|++++.||.|++|.+..+......
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 4455555554 455789999999764222211 11112344699999999 7889999999999999999876543332
Q ss_pred cccccccceeeeecCCCCccccEEEEEEeCC-CCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEE
Q 015438 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 286 (407)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~ 286 (407)
..... ...+|...|+++.|+|- ...|++++.|.+|++||+.+++....+.+|.+.|..++|| ++|+.++
T Consensus 667 ~tPe~---------~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWS-pdGr~~A 736 (1012)
T KOG1445|consen 667 MTPEK---------ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWS-PDGRRIA 736 (1012)
T ss_pred CCcce---------eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEEC-CCCccee
Confidence 22111 12247778999999994 4689999999999999999999999999999999999998 8999999
Q ss_pred EEeCCCcEEEEeCcccCCCCceeeeeccccC-CeEEEEecCCCCEEEEEeCCC----cEEEEECCCCC
Q 015438 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQ----AIKLWDIRKMS 349 (407)
Q Consensus 287 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~~~dg----~i~iwd~~~~~ 349 (407)
+.+.||+|++|..+. ..++++.-.+..+ .--.+.|.-||++++..+.|. .|.+||..+..
T Consensus 737 tVcKDg~~rVy~Prs---~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 737 TVCKDGTLRVYEPRS---REQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred eeecCceEEEeCCCC---CCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence 999999999999983 3344444333322 224567888999999888654 58899887754
No 183
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=1.3e-16 Score=149.27 Aligned_cols=202 Identities=17% Similarity=0.145 Sum_probs=136.7
Q ss_pred cCCCCcccccCCCceEEEEECCCCCEEEEEeCC---CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEe-
Q 015438 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS- 188 (407)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~- 188 (407)
.+.....+..|...+...+|||||+.|+.++.+ ..|++||+.++.... .....++ ...++|+|||+.|+.++
T Consensus 192 dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~---~~~~~wSPDG~~La~~~~ 267 (429)
T PRK01742 192 DGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGH---NGAPAFSPDGSRLAFASS 267 (429)
T ss_pred CCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCc---cCceeECCCCCEEEEEEe
Confidence 344456677888899999999999999987653 369999998874322 2222332 44689999999988764
Q ss_pred CCCeEEE--EECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEee-CCCeEEEEEcCCC-eeeee
Q 015438 189 MSPIVHI--VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEAN-KLSLR 264 (407)
Q Consensus 189 ~dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~ 264 (407)
.+|.+.| ||+.++....+. .+...+....|+|||+.|+.++ .+|...||++... .....
T Consensus 268 ~~g~~~Iy~~d~~~~~~~~lt-----------------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 268 KDGVLNIYVMGANGGTPSQLT-----------------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred cCCcEEEEEEECCCCCeEeec-----------------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 6776554 566655433221 1223567899999999777655 5677777776432 22222
Q ss_pred eeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEE
Q 015438 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (407)
Q Consensus 265 ~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd 344 (407)
+ .+.. ..+.|+ ++++.|+..+.++ +.+||+. .+........+ ....++|+|||++|+.++.++.+.+|+
T Consensus 331 l-~~~~--~~~~~S-pDG~~ia~~~~~~-i~~~Dl~----~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 331 V-GGRG--YSAQIS-ADGKTLVMINGDN-VVKQDLT----SGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred e-cCCC--CCccCC-CCCCEEEEEcCCC-EEEEECC----CCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEE
Confidence 3 3333 457898 7888888877765 5569987 55443222222 235678999999999999999998888
Q ss_pred CC
Q 015438 345 IR 346 (407)
Q Consensus 345 ~~ 346 (407)
+.
T Consensus 400 ~~ 401 (429)
T PRK01742 400 LV 401 (429)
T ss_pred EE
Confidence 64
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.76 E-value=5.3e-17 Score=147.22 Aligned_cols=246 Identities=15% Similarity=0.134 Sum_probs=185.5
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceec
Q 015438 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (407)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~ 205 (407)
.|+.++|-|||..|+.+. +..+.|||...|..+. ..++|...|.+++|+.||+.+++|+.|..|.+|.-.-.....
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccccc---ccccccceEEEEEEccCCceeccCCCceeEEEecccccceee
Confidence 789999999999988874 4679999999985444 578899999999999999999999999999999865332221
Q ss_pred cccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEE
Q 015438 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (407)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l 285 (407)
. .|...|.||.|+|-...|++++-+ ..-+|........ +. .....+.+++|. .+|++|
T Consensus 90 Y------------------SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~-kss~R~~~CsWt-nDGqyl 147 (1081)
T KOG1538|consen 90 Y------------------SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KH-KSSSRIICCSWT-NDGQYL 147 (1081)
T ss_pred e------------------ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hh-hhheeEEEeeec-CCCcEE
Confidence 1 367789999999999999998765 3678887654332 22 235678899997 999999
Q ss_pred EEEeCCCcEEEEeCcccCCCCcee---eeeccccCCeEEEEecCCC-----CEEEEEeCCCcEEEEECCCCCCcccccCC
Q 015438 286 YSGSDDNLCKVWDRRCLNVKGKPA---GVLMGHLEGITFIDSRGDG-----RYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (407)
Q Consensus 286 ~s~~~d~~i~vwd~~~~~~~~~~~---~~~~~~~~~i~~~~~s~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (407)
+.|-.+|+|.+-+.. +++. ...-|..++|.+++|+|.. ..++......++.++.+...... .
T Consensus 148 alG~~nGTIsiRNk~-----gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig-----k 217 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNKN-----GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIG-----K 217 (1081)
T ss_pred EEeccCceEEeecCC-----CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeec-----c
Confidence 999999999998653 3333 3333577899999999853 46888888999999987652211 1
Q ss_pred CccccccceeeeCCCCCCc-cCCCCCcceEEEeCCc--------cceeeEEEeeCCCCC
Q 015438 358 FRSYEWDYRWMDYPPQARD-LKHPCDQSVATYKGHS--------VLRTLIRCHFSPVYR 407 (407)
Q Consensus 358 ~~~~~~~v~~~~~~~~~~~-l~~~~~~~v~~~~gh~--------~~~~~~~~~fsp~~~ 407 (407)
.+....+..++.+-++|.+ |..++|+.+..|+-.. ..-++..|.-.|..|
T Consensus 218 ~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ 276 (1081)
T KOG1538|consen 218 DRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQ 276 (1081)
T ss_pred cccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCc
Confidence 3345667778888888755 4567889999997443 223567777777654
No 185
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=3.9e-18 Score=153.62 Aligned_cols=198 Identities=16% Similarity=0.216 Sum_probs=149.0
Q ss_pred ECCCCCeEEE--EeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeC-CCCEEEEeeCCCeEEE
Q 015438 177 LSPDQRHLVY--ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYV 253 (407)
Q Consensus 177 ~sp~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 253 (407)
|+.+...+++ ++..|.|-||+++......--.+.... ....|+++.|+| |...|++++.||.|++
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~------------Ngt~vtDl~WdPFD~~rLAVa~ddg~i~l 654 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF------------NGTLVTDLHWDPFDDERLAVATDDGQINL 654 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc------------cCceeeecccCCCChHHeeecccCceEEE
Confidence 4445556655 466789999999865432222222211 223699999999 6678999999999999
Q ss_pred EEcCCC-------eeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecC
Q 015438 254 YDLEAN-------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (407)
Q Consensus 254 ~d~~~~-------~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 326 (407)
|.+..+ .+-..+..|...|+++.|+|-..+.|++++.|-+|++||++ .++....+.+|.+.|..++|+|
T Consensus 655 Wr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~----~~~~~~~l~gHtdqIf~~AWSp 730 (1012)
T KOG1445|consen 655 WRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA----NAKLYSRLVGHTDQIFGIAWSP 730 (1012)
T ss_pred EEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh----hhhhhheeccCcCceeEEEECC
Confidence 998754 34456788999999999999899999999999999999999 7888889999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCC-C----CCcceEEEeCCc
Q 015438 327 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH-P----CDQSVATYKGHS 392 (407)
Q Consensus 327 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~----~~~~v~~~~gh~ 392 (407)
+|+.+++.+.||+|++|.-++......--. ......-..+.|.-+|+++.+ + +.+.|.+|+..+
T Consensus 731 dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~--gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 731 DGRRIATVCKDGTLRVYEPRSREQPVYEGK--GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred CCcceeeeecCceEEEeCCCCCCCccccCC--CCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 999999999999999999998776543321 222222333445556666543 2 346677777665
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=5.1e-17 Score=143.82 Aligned_cols=249 Identities=14% Similarity=0.204 Sum_probs=173.5
Q ss_pred cCCCceEEEEECCCCCEEEEEeCCCeEEEE-EcCCCeEEeEeeeccccceEEEEEEEC-------CCCCeEEEEeCCCeE
Q 015438 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIY-DVERGWKIQKDILAKSLRWTVTDTSLS-------PDQRHLVYASMSPIV 193 (407)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~v~~~~~s-------p~~~~l~~~~~dg~i 193 (407)
.|...|.|+.|+.+...+.++. |..+.+| |+.+. ........... -.+.+-.- .....|+.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~-s~~~~~~p~df--~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRD-SVEVAKLPDDF--VPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccch-hhhhhhCCccc--CCccccccccccCCCCCcceEEEEcCCceE
Confidence 4667778999998887776665 4555555 44332 11111111110 00111111 124578888999999
Q ss_pred EEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeE
Q 015438 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 273 (407)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 273 (407)
.+.+-.... ... ...|.+.+.+-.|+|+|.-|+++++||.|++|.- +|-...++.....+|.
T Consensus 88 ~il~k~~rV-E~s----------------v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 88 VILNKSARV-ERS----------------ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIR 149 (737)
T ss_pred EEecccchh-hhh----------------hhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeE
Confidence 988743322 111 1247779999999999999999999999999984 4555455556678999
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCccc
Q 015438 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (407)
Q Consensus 274 ~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (407)
|++|.|.+.+.+++.+ +.+.|=.+. ....+..+++|.+-|.++.|++....+++||+|-..+|||-.-. .+..
T Consensus 150 c~~W~p~S~~vl~c~g--~h~~IKpL~----~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-~Lf~ 222 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQG--GHISIKPLA----ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-NLFT 222 (737)
T ss_pred EEEECCCCCceEEecC--CeEEEeecc----cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc-cccc
Confidence 9999877777776654 455555555 44556678899999999999999999999999999999996543 2222
Q ss_pred ccCCCccccccceeeeCCCCCCccCCCCCcceEEEeCCccceeeEEEeeCCCC
Q 015438 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (407)
Q Consensus 354 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh~~~~~~~~~~fsp~~ 406 (407)
...+..++++++|.|+ .++++++-.+++ |. ..+...+..+.||||+
T Consensus 223 ----S~~~ey~ITSva~npd-~~~~v~S~nt~R-~~-~p~~GSifnlsWS~DG 268 (737)
T KOG1524|consen 223 ----SAAEEYAITSVAFNPE-KDYLLWSYNTAR-FS-SPRVGSIFNLSWSADG 268 (737)
T ss_pred ----CChhccceeeeeeccc-cceeeeeeeeee-ec-CCCccceEEEEEcCCC
Confidence 5678899999999999 777776666666 22 1234579999999997
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.2e-17 Score=136.74 Aligned_cols=219 Identities=13% Similarity=0.145 Sum_probs=158.2
Q ss_pred CCCCcccccCCCceEEEEECC--CCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEe---
Q 015438 114 VNGPWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS--- 188 (407)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--- 188 (407)
.+....+.++...++.++|.. ....+.+++.||.|++||++................+..+++.+..++.+++|+
T Consensus 60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~ 139 (376)
T KOG1188|consen 60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELT 139 (376)
T ss_pred hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccc
Confidence 334566788889999999987 467789999999999999988755554443333345688888877888888875
Q ss_pred -CCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCC-CCEEEEeeCCCeEEEEEcCCCe---eee
Q 015438 189 -MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK---LSL 263 (407)
Q Consensus 189 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~---~~~ 263 (407)
.+-.|.+||++..+.. +... ...|...|++++|+|+ .++|++|+.||.|.+||++... .+.
T Consensus 140 ~s~A~v~lwDvR~~qq~-l~~~-------------~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~ 205 (376)
T KOG1188|consen 140 RSDASVVLWDVRSEQQL-LRQL-------------NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL 205 (376)
T ss_pred cCceEEEEEEeccccch-hhhh-------------hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH
Confidence 3568999999876542 1111 1247779999999995 4699999999999999997542 222
Q ss_pred eeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccC----------------------------------------
Q 015438 264 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN---------------------------------------- 303 (407)
Q Consensus 264 ~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~---------------------------------------- 303 (407)
..-.+...|.++.|..+..+.|.+-+......+|++....
T Consensus 206 ~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g 285 (376)
T KOG1188|consen 206 HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAG 285 (376)
T ss_pred HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEec
Confidence 2225677788999974444567788888888888875111
Q ss_pred -----------------CCCceeeeecc-ccCCeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 015438 304 -----------------VKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (407)
Q Consensus 304 -----------------~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~ 346 (407)
...+.+..+.+ |..-|.++.|...+.++.|||+||.+.+|...
T Consensus 286 ~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 286 TDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 01122223333 44556777888788999999999999999963
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=2e-17 Score=141.64 Aligned_cols=169 Identities=15% Similarity=0.185 Sum_probs=139.9
Q ss_pred eEEEEEEECCCCC-eEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC
Q 015438 170 WTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (407)
Q Consensus 170 ~~v~~~~~sp~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 248 (407)
.+|..+.|.++.. .|++|+.|..|++|-++.+....-. ...........|...|+++.|+|+|.+|++|+.+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-------~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~ 86 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-------MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG 86 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-------eeEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence 3699999998776 9999999999999999865443210 0001112344688899999999999999999999
Q ss_pred CeEEEEEcC--------C--------CeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeee
Q 015438 249 DCIYVYDLE--------A--------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 312 (407)
Q Consensus 249 g~i~i~d~~--------~--------~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 312 (407)
|.|.+|-.. + ....+.+.+|...+..++|+ ++++++++++.|+.+++||+. .++.+..+
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws-~d~~~l~s~s~dns~~l~Dv~----~G~l~~~~ 161 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS-PDSNFLVSGSVDNSVRLWDVH----AGQLLAIL 161 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc-CCCceeeeeeccceEEEEEec----cceeEeec
Confidence 999999765 2 23445677899999999998 899999999999999999999 99999999
Q ss_pred ccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 015438 313 MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (407)
Q Consensus 313 ~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (407)
.+|...|..++|.|-.+++++-+.|...+.+++...+.
T Consensus 162 ~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred cccccccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence 99999999999999999999999998888877765443
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=1.3e-15 Score=138.20 Aligned_cols=250 Identities=15% Similarity=0.127 Sum_probs=160.1
Q ss_pred CCceEEEEECCCCCEEEEEe-CCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeC-CCeEEEEECCCC
Q 015438 124 TSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSG 201 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~i~vwd~~~~ 201 (407)
.+....++++|++++|++++ .++.|.+|+++....+...... ........++|+|++++|++++. ++.|.+|+++..
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 45677899999999987664 4788999998732122111111 11223678999999999988764 789999999743
Q ss_pred c-eeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEee-CCCeEEEEEcCCCeeee-------eeeccCCCe
Q 015438 202 T-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSL-------RILAHTSDV 272 (407)
Q Consensus 202 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~-------~~~~~~~~v 272 (407)
. ........ .+......++++|+++++++++ .++.|.+||+.+...+. ... .....
T Consensus 113 g~~~~~~~~~--------------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p 177 (330)
T PRK11028 113 GIPVAPIQII--------------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGP 177 (330)
T ss_pred CCCCCceeec--------------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCC
Confidence 2 11111100 0111356788999999886554 56899999997643221 111 23345
Q ss_pred EEEEecCCCCCEEEEEeC-CCcEEEEeCcccCCCCceeeeeccc------cCCeEEEEecCCCCEEEEEeC-CCcEEEEE
Q 015438 273 NTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSRGDGRYLISNGK-DQAIKLWD 344 (407)
Q Consensus 273 ~~i~~s~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~s~~~-dg~i~iwd 344 (407)
..+.|+ +++++++++.. ++.|.+||+.......+.+..+..+ ......+.++|++++|+++.. ++.|.+|+
T Consensus 178 ~~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 178 RHMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred ceEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 789998 78888877765 8999999996211112233333221 112346889999999998864 78999999
Q ss_pred CCCCCCcccccCCCccccccceeeeCCCCCCccCCCC--CcceEEEeCC
Q 015438 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC--DQSVATYKGH 391 (407)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~v~~~~gh 391 (407)
+........... ........+.+.++|+++.|.++. ++.|.+|+-.
T Consensus 257 i~~~~~~~~~~~-~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 257 VSEDGSVLSFEG-HQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EeCCCCeEEEeE-EEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 976433222211 111123455688999998887653 6889999754
No 190
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.75 E-value=3.3e-17 Score=145.02 Aligned_cols=212 Identities=20% Similarity=0.268 Sum_probs=152.6
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeEEeEeeec--cccceEEEEEEECCC-CCeEEEEeCCCeEEEEECCCCceecccccc
Q 015438 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILA--KSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVT 210 (407)
Q Consensus 134 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~sp~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 210 (407)
|.+--++.|-.-|.|.++|.... .+.++... ......|+++.|-|. ...++++-.+|.+++||.+-..........
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45556778888899999987652 22211111 112357999999994 456667788999999987422111000000
Q ss_pred ccccceeeeecCCC------------CccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEec
Q 015438 211 EIHDGLDFSAADDG------------GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (407)
Q Consensus 211 ~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s 278 (407)
...++-.|..+... --.+.|+..+|+|||++||+.++||.++|||..+.+++..++..-+...|++||
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 00000011111000 013478999999999999999999999999999999888888888999999998
Q ss_pred CCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCC-------------------------------
Q 015438 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD------------------------------- 327 (407)
Q Consensus 279 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~------------------------------- 327 (407)
+||++|++|+.|..|.||.+. ..+.+..-.+|.++|+.++|+|-
T Consensus 342 -PDGKyIvtGGEDDLVtVwSf~----erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~ 416 (636)
T KOG2394|consen 342 -PDGKYIVTGGEDDLVTVWSFE----ERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGT 416 (636)
T ss_pred -CCccEEEecCCcceEEEEEec----cceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCC
Confidence 899999999999999999998 88999999999999999999830
Q ss_pred ----C-------------CEEEEEeCCCcEEEEECCCCCCc
Q 015438 328 ----G-------------RYLISNGKDQAIKLWDIRKMSSN 351 (407)
Q Consensus 328 ----~-------------~~l~s~~~dg~i~iwd~~~~~~~ 351 (407)
+ ..|.+.+.|-.+.+||+......
T Consensus 417 ~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 417 GSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred CCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence 1 24667788999999999865443
No 191
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=3.8e-17 Score=146.36 Aligned_cols=203 Identities=21% Similarity=0.215 Sum_probs=163.1
Q ss_pred cccCCCceEEEEECCCCCEEEEEeCC---CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEE
Q 015438 120 VDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (407)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vw 196 (407)
.-.|...|..+.|+..|.||++...+ ..|.|+++...... ..+....+.|.++.|+|...+|++++. ..|+||
T Consensus 517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ---~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiY 592 (733)
T KOG0650|consen 517 VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ---SPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIY 592 (733)
T ss_pred EEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc---CchhhcCCceeEEEecCCCceEEEEec-cceEEE
Confidence 34678899999999999999987653 56999998875333 223334456999999999999998875 679999
Q ss_pred ECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC-eeeeeeeccCCCeEEE
Q 015438 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTV 275 (407)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i 275 (407)
|+........... ....|..++.+|.|..|+.|+.|+.+..||+.-. ++.+++..|...+.++
T Consensus 593 dL~kqelvKkL~t----------------g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~V 656 (733)
T KOG0650|consen 593 DLSKQELVKKLLT----------------GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSV 656 (733)
T ss_pred ehhHHHHHHHHhc----------------CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhh
Confidence 9987554332211 1227899999999999999999999999999754 6778888999999999
Q ss_pred EecCCCCCEEEEEeCCCcEEEEeCcccC-----CCCceeeeeccccCC----eEEEEecCCCCEEEEEeCCCcEEEE
Q 015438 276 CFGDESGHLIYSGSDDNLCKVWDRRCLN-----VKGKPAGVLMGHLEG----ITFIDSRGDGRYLISNGKDQAIKLW 343 (407)
Q Consensus 276 ~~s~~~~~~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~~~~~~~----i~~~~~s~~~~~l~s~~~dg~i~iw 343 (407)
+|+ ..-.+|++|+.||++.||.-.-.+ .---++..+.+|... |..+.|+|...+|++++.||+|++|
T Consensus 657 a~H-~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 657 AFH-KRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhc-cccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 998 778899999999999998754221 124567788888654 8899999999999999999999998
No 192
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.6e-16 Score=132.19 Aligned_cols=254 Identities=15% Similarity=0.142 Sum_probs=166.5
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC-CCeEEEEeCCCeEEEEECCCCc
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGT 202 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~i~vwd~~~~~ 202 (407)
+..+..++|++.-..+|++..|-.|++|+-... .... .....+..|++++|-|. +..|++|+..| |.+|......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~--Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTK--LKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC-CCce--ecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccc
Confidence 567889999997777889999999999997652 2222 22233456999999995 55777887765 8899876432
Q ss_pred ee-ccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC-CCeEEEEEcCCCeeeeeeeccCCCeEEEEecCC
Q 015438 203 ME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (407)
Q Consensus 203 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~ 280 (407)
.. ........+ ........|| ..|++|+|++||..+++++- |..|.|||..++..+.......+.+.-+.|| |
T Consensus 174 n~~r~~~~~s~~---~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS-P 248 (445)
T KOG2139|consen 174 NANRNIRMMSTH---HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS-P 248 (445)
T ss_pred cccccccccccc---chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc-C
Confidence 21 111111111 1112223344 58999999999999998875 5689999999988765554566788999998 8
Q ss_pred CCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCccccc-----
Q 015438 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN----- 355 (407)
Q Consensus 281 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----- 355 (407)
++.+|++++-|+..++|.... ......-. --.+.|...+|+|+|++|+.+. .|.-++|.+.-..+.....
T Consensus 249 dgd~lfaAt~davfrlw~e~q---~wt~erw~-lgsgrvqtacWspcGsfLLf~~-sgsp~lysl~f~~~~~~~~~~~~~ 323 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQENQ---SWTKERWI-LGSGRVQTACWSPCGSFLLFAC-SGSPRLYSLTFDGEDSVFLRPQSI 323 (445)
T ss_pred CCCEEEEecccceeeeehhcc---cceeccee-ccCCceeeeeecCCCCEEEEEE-cCCceEEEEeecCCCccccCcccc
Confidence 899999999999999996641 22222222 2344899999999999877555 2445556554322211111
Q ss_pred ---------------CCCccccccceeeeCCCCCCccCCC--CCcceEEEeCC
Q 015438 356 ---------------LGFRSYEWDYRWMDYPPQARDLKHP--CDQSVATYKGH 391 (407)
Q Consensus 356 ---------------~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~v~~~~gh 391 (407)
.+..-......++++.|.|.+|++. ....|..|++|
T Consensus 324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~ 376 (445)
T KOG2139|consen 324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLH 376 (445)
T ss_pred eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhh
Confidence 1122234456788888888777653 23334444444
No 193
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.74 E-value=2.8e-15 Score=140.29 Aligned_cols=244 Identities=29% Similarity=0.425 Sum_probs=185.9
Q ss_pred ccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCe-EEeEeeeccccceEEEEEEE-CCCCC-eEEEEeC-CCeEE
Q 015438 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSL-SPDQR-HLVYASM-SPIVH 194 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~-sp~~~-~l~~~~~-dg~i~ 194 (407)
.+..|...+.++.|.+.+..++.++.|+.+.+|+...+. .......... ..+..+.+ ++++. .++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEECCCcceEEeccCCCCccEE
Confidence 567889999999999999999999999999999998874 3332222111 34666666 88887 5555444 89999
Q ss_pred EEECCC-CceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC-CCeEEEEEcCCCeeeeeeeccCCCe
Q 015438 195 IVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDV 272 (407)
Q Consensus 195 vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v 272 (407)
+|+... ....... ..|...|..+.|+|++..+++++. ++.+++|++..++.+..+..|...|
T Consensus 138 ~~~~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 201 (466)
T COG2319 138 LWDLSTPGKLIRTL----------------EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201 (466)
T ss_pred EEEecCCCeEEEEE----------------ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence 999987 3222211 135568899999999998888885 9999999999988888888899999
Q ss_pred EEEEecCCCCC-EEEEEeCCCcEEEEeCcccCCCCceee-eeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 015438 273 NTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (407)
Q Consensus 273 ~~i~~s~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (407)
.+++|+ +++. ++++++.|+.|++||.. .+..+. .+.+|.... ...|+|++.++++++.|+.+++|+++....
T Consensus 202 ~~~~~~-~~~~~~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 202 SSLAFS-PDGGLLIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred EEEEEc-CCcceEEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 999998 6676 55555899999999887 666666 688888775 448999998999999999999999998776
Q ss_pred -cccccCCCccccccceeeeCCCCCCccC-CCCCcceEEEeC
Q 015438 351 -NASCNLGFRSYEWDYRWMDYPPQARDLK-HPCDQSVATYKG 390 (407)
Q Consensus 351 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~v~~~~g 390 (407)
.... ..+...+..+.|.|++..+. .+.|+.+.+|+.
T Consensus 276 ~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 276 LLRTL----SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred EEEEE----ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEc
Confidence 2222 23356677778888654444 444566777754
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5e-16 Score=145.30 Aligned_cols=254 Identities=12% Similarity=0.044 Sum_probs=174.7
Q ss_pred ccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCC-CeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 015438 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (407)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~ 199 (407)
..|...++|.++||+++++|+|..||.|.+|.--. ...-......+=|..+|.++.|+++|.+|++|+..+.+.+|.++
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 46777899999999999999999999999997433 11112222344466789999999999999999999999999999
Q ss_pred CCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeec-----------c
Q 015438 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-----------H 268 (407)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~ 268 (407)
+++..-+.++. ++|..+.++||+.+.+....|..|.+....+......+.+ .
T Consensus 282 T~~kqfLPRLg-----------------s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~ 344 (792)
T KOG1963|consen 282 TGKKQFLPRLG-----------------SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRP 344 (792)
T ss_pred CCCcccccccC-----------------CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccc
Confidence 98844333322 3799999999999999999999999998765443333221 1
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEeCccc----------------------------------------------
Q 015438 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL---------------------------------------------- 302 (407)
Q Consensus 269 ~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~---------------------------------------------- 302 (407)
.+-.+.++++ +..+.++-.+..|.|.+||+-..
T Consensus 345 ~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~ 423 (792)
T KOG1963|consen 345 QSLTTGVSID-PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKF 423 (792)
T ss_pred cccceeEEEc-CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhh
Confidence 2234455665 33444555556666666665310
Q ss_pred -----------------CCCCcee-eeeccccCCeEEEEec-CCC-CEEEEEeCCCcEEEEECCCCCC------cccccC
Q 015438 303 -----------------NVKGKPA-GVLMGHLEGITFIDSR-GDG-RYLISNGKDQAIKLWDIRKMSS------NASCNL 356 (407)
Q Consensus 303 -----------------~~~~~~~-~~~~~~~~~i~~~~~s-~~~-~~l~s~~~dg~i~iwd~~~~~~------~~~~~~ 356 (407)
..+.... .....|...+...++. +.. ..+++++.||.++||-+...+. ...|..
T Consensus 424 ~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~ 503 (792)
T KOG1963|consen 424 NFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKA 503 (792)
T ss_pred hccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEee
Confidence 0000000 1122455555555543 333 3789999999999999954433 333322
Q ss_pred CCccccccceeeeCCCCCCccCCCCCcceEEEeCCc
Q 015438 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS 392 (407)
Q Consensus 357 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh~ 392 (407)
-..-+-.+++...|+.||.+|+++.++.|.+|+-.+
T Consensus 504 i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 504 IGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred eeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 222346678889999999999999999999998765
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.2e-16 Score=137.79 Aligned_cols=196 Identities=14% Similarity=0.118 Sum_probs=142.5
Q ss_pred EEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEE
Q 015438 173 TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (407)
Q Consensus 173 ~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 252 (407)
..++|+++|..+++++.||+++||+..+........ .|...|.++.|+|||+.|++-+.| ..+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~----------------~~~~eV~DL~FS~dgk~lasig~d-~~~ 210 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI----------------AHHAEVKDLDFSPDGKFLASIGAD-SAR 210 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH----------------hhcCccccceeCCCCcEEEEecCC-ceE
Confidence 678999999999999999999999976554332211 366689999999999999999999 899
Q ss_pred EEEcCCCeeeeeeec--cCCCeEEEEecCCCC---CEEE--EEeCCCcEEEEeCcccCCC-CceeeeeccccCCeEEEEe
Q 015438 253 VYDLEANKLSLRILA--HTSDVNTVCFGDESG---HLIY--SGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDS 324 (407)
Q Consensus 253 i~d~~~~~~~~~~~~--~~~~v~~i~~s~~~~---~~l~--s~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~i~~~~~ 324 (407)
||+.+++..+..... .+.-...+.|+ .++ .+++ .-..-+.|+.||+..-... --+..........|++++.
T Consensus 211 VW~~~~g~~~a~~t~~~k~~~~~~cRF~-~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 211 VWSVNTGAALARKTPFSKDEMFSSCRFS-VDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred EEEeccCchhhhcCCcccchhhhhceec-ccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 999999977665542 22335667776 444 3332 2334467777776421101 0012222223457999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccC-CCCCcceEEEe
Q 015438 325 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK-HPCDQSVATYK 389 (407)
Q Consensus 325 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~v~~~~ 389 (407)
+++|++++.|+.||.|-|++..+++.++.. ...|..-|+.+.|+|+.+.+. .+.+...++++
T Consensus 290 S~dGkf~AlGT~dGsVai~~~~~lq~~~~v---k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 290 SDDGKFLALGTMDGSVAIYDAKSLQRLQYV---KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred cCCCcEEEEeccCCcEEEEEeceeeeeEee---hhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 999999999999999999999999887766 446677899999999987765 44555555543
No 196
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.73 E-value=7.8e-15 Score=137.26 Aligned_cols=263 Identities=24% Similarity=0.342 Sum_probs=184.5
Q ss_pred cccceeeeeccCC-CCcccccCC-CceEEEEE-CCCCC-EEEEEeC-CCeEEEEEcCC-CeEEeEeeeccccceEEEEEE
Q 015438 103 DCCHMLSRYLPVN-GPWPVDQTT-SRAYVSQF-SADGS-LFVAGFQ-ASQIRIYDVER-GWKIQKDILAKSLRWTVTDTS 176 (407)
Q Consensus 103 ~~~~~~~~~~~~~-~~~~~~~h~-~~v~~~~~-s~~~~-~l~~~~~-dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~ 176 (407)
+....++...... ....+..+. ..+..+.+ ++++. .++..+. |+.+.+|+... ..... ....|...|..++
T Consensus 86 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~ 162 (466)
T COG2319 86 DGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLA 162 (466)
T ss_pred CCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEE
Confidence 3334444444433 334444433 37777777 88887 5555444 89999999987 32332 3445666799999
Q ss_pred ECCCCCeEEEEeC-CCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCC-EEEEeeCCCeEEEE
Q 015438 177 LSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVY 254 (407)
Q Consensus 177 ~sp~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~ 254 (407)
|+|++..+++++. ++.+++|++..+....... +|...|.+++|+|++. .+++++.|+.|++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~w 226 (466)
T COG2319 163 FSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA----------------GHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226 (466)
T ss_pred ECCCCCEEEecCCCCCceEEEEcCCCceEEeec----------------cCCCceEEEEEcCCcceEEEEecCCCcEEEE
Confidence 9999998888885 9999999998744433322 2566899999999998 55555899999999
Q ss_pred EcCCCeeee-eeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCce-eeeeccccCCeEEEEecCCCCEEE
Q 015438 255 DLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP-AGVLMGHLEGITFIDSRGDGRYLI 332 (407)
Q Consensus 255 d~~~~~~~~-~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~ 332 (407)
|...+..+. .+..|...+ ...|+ +++.++++++.|+.+++||.+. ... +..+.+|...|.++.|+|++..++
T Consensus 227 d~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 300 (466)
T COG2319 227 DLSTGKLLRSTLSGHSDSV-VSSFS-PDGSLLASGSSDGTIRLWDLRS----SSSLLRTLSGHSSSVLSVAFSPDGKLLA 300 (466)
T ss_pred ECCCCcEEeeecCCCCcce-eEeEC-CCCCEEEEecCCCcEEEeeecC----CCcEEEEEecCCccEEEEEECCCCCEEE
Confidence 998777777 577887775 44787 6668888999999999999983 332 444467889999999999999999
Q ss_pred EEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCC-CCccCC-CCCcceEEEeCCc
Q 015438 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ-ARDLKH-PCDQSVATYKGHS 392 (407)
Q Consensus 333 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~-~~~~~v~~~~gh~ 392 (407)
+++.|+.+.+||+.+........ ...+...+..+.++++ ..+... ..++.+..|....
T Consensus 301 ~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 360 (466)
T COG2319 301 SGSSDGTVRLWDLETGKLLSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360 (466)
T ss_pred EeeCCCcEEEEEcCCCceEEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCC
Confidence 99999999999988876555442 1112224555666333 233333 3556666665544
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=4.4e-16 Score=137.97 Aligned_cols=201 Identities=14% Similarity=0.158 Sum_probs=156.1
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccce
Q 015438 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL 216 (407)
Q Consensus 137 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 216 (407)
..|+.++.||.+.|.+-.. ++. .....|.+.+.+-.|+|+|.-|++++.||.|++|.-. |-......
T Consensus 76 d~~~i~s~DGkf~il~k~~--rVE--~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~-------- 142 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA--RVE--RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVV-------- 142 (737)
T ss_pred ceEEEEcCCceEEEecccc--hhh--hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHh--------
Confidence 4688888999999988543 122 2345688889999999999999999999999999853 32211111
Q ss_pred eeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 015438 217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296 (407)
Q Consensus 217 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~v 296 (407)
....+|.|++|.|+.+.++.+. .+.+.|=.+.....+...++|++-|.++.|+ +..+++++|+.|-..+|
T Consensus 143 --------Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~-~~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 143 --------QNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWS-TQSNIIASGGEDFRFKI 212 (737)
T ss_pred --------hcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecC-ccccceeecCCceeEEe
Confidence 0222799999999887666653 4578888888777788889999999999998 77889999999999999
Q ss_pred EeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCc
Q 015438 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 376 (407)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 376 (407)
||. .+.++..-..|.-+|++++|+|+ ..++.++. +++++ .+.....+-.+++|+||..
T Consensus 213 WD~-----~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~---------------~~p~~GSifnlsWS~DGTQ 270 (737)
T KOG1524|consen 213 WDA-----QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF---------------SSPRVGSIFNLSWSADGTQ 270 (737)
T ss_pred ecc-----cCcccccCChhccceeeeeeccc-cceeeeee-eeeee---------------cCCCccceEEEEEcCCCce
Confidence 998 68888888899999999999999 55565553 44442 2223445667889999999
Q ss_pred cCCCCC
Q 015438 377 LKHPCD 382 (407)
Q Consensus 377 l~~~~~ 382 (407)
+++++.
T Consensus 271 ~a~gt~ 276 (737)
T KOG1524|consen 271 ATCGTS 276 (737)
T ss_pred eecccc
Confidence 988764
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=8.1e-16 Score=131.34 Aligned_cols=217 Identities=12% Similarity=0.054 Sum_probs=153.7
Q ss_pred ccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEE
Q 015438 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (407)
Q Consensus 165 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 244 (407)
..+|.+.|.++.|+.++++|++|+.|..+++|+++..-...+.+... + ....|...|.|++|+...+.+++
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~------~---~~~~H~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG------V---MEHPHRSNIFSLEFDLENRFLYS 122 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce------e---ccCccccceEEEEEccCCeeEec
Confidence 35688889999999999999999999999999987432211111000 0 11236678999999998899999
Q ss_pred eeCCCeEEEEEcCCCeeeeeeeccC---CCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEE
Q 015438 245 GSSDDCIYVYDLEANKLSLRILAHT---SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 321 (407)
Q Consensus 245 ~~~dg~i~i~d~~~~~~~~~~~~~~---~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~ 321 (407)
|..+++|...|+++.+.+..+ .|. +.|+.+..+ |..+.|++.+.++.|.+||.|.....+.++. +.........
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~-P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~~~~F~t 199 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQH-PTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-PANSGKNFYT 199 (609)
T ss_pred CCCcceeEeeecccceeeeee-cccCcccceeecccC-CCCceEEEEecCceEEEEeccCCCCCCceee-ecCCCcccee
Confidence 999999999999998877665 344 489999999 5588999999999999999995432333332 2233445678
Q ss_pred EEecCCC-CEEEEEeCCCcEEEEECCCCCCccccc---CCCccccccceeeeCCCCC-CccCCCCCcceEEEeCCcc
Q 015438 322 IDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCN---LGFRSYEWDYRWMDYPPQA-RDLKHPCDQSVATYKGHSV 393 (407)
Q Consensus 322 ~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~v~~~~gh~~ 393 (407)
+.|+|.. .+|++.+..+.+-+||+++........ .+..........+.|+|.| ++++.-...+-..|+-|+.
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ 276 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc
Confidence 8899954 678889999999999999865533222 1122222333456688887 4555545555555555543
No 199
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.70 E-value=3.9e-15 Score=132.10 Aligned_cols=226 Identities=16% Similarity=0.274 Sum_probs=156.2
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccc-cceEEEEEEE-----CCCCCeEEEEeCCCeEEEEEC
Q 015438 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSL-----SPDQRHLVYASMSPIVHIVDV 198 (407)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~-----sp~~~~l~~~~~dg~i~vwd~ 198 (407)
+.+....++-.|++|+..-. ..+++|+...+..+...+.... ......|-.| .|.+--+++|-..|.|.+.|.
T Consensus 124 g~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred cceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecc
Confidence 34556666777888877643 5699999875422222111100 0011233333 456777888888899999887
Q ss_pred CCCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCC------------------
Q 015438 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEAN------------------ 259 (407)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~------------------ 259 (407)
...+...++...... .+..|+|+.|-|.+ ..++++-.+|.+++||..-.
T Consensus 203 ~~~~~sklfne~r~i------------~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~ 270 (636)
T KOG2394|consen 203 INFEVSKLFNEERLI------------NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFA 270 (636)
T ss_pred hhhHHHHhhhhcccc------------cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeE
Confidence 664333333222111 23479999999954 46777888999999975310
Q ss_pred ----------eeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCC
Q 015438 260 ----------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 329 (407)
Q Consensus 260 ----------~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 329 (407)
.++..+....+.|...+|+ ++|++||+.+.||.+||||.. +.+.+..++..-++..+++|+|||+
T Consensus 271 i~t~ksk~~rNPv~~w~~~~g~in~f~FS-~DG~~LA~VSqDGfLRvF~fd----t~eLlg~mkSYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 271 ILTSKSKKTRNPVARWHIGEGSINEFAFS-PDGKYLATVSQDGFLRIFDFD----TQELLGVMKSYFGGLLCVCWSPDGK 345 (636)
T ss_pred EeeeeccccCCccceeEeccccccceeEc-CCCceEEEEecCceEEEeecc----HHHHHHHHHhhccceEEEEEcCCcc
Confidence 1122223345678899999 599999999999999999998 6677777777788999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCC
Q 015438 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 372 (407)
Q Consensus 330 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 372 (407)
||++|++|.-|.||.+...+.+... ..+..| |+.|+|.|
T Consensus 346 yIvtGGEDDLVtVwSf~erRVVARG---qGHkSW-Vs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEERRVVARG---QGHKSW-VSVVAFDP 384 (636)
T ss_pred EEEecCCcceEEEEEeccceEEEec---cccccc-eeeEeecc
Confidence 9999999999999999987776554 333344 45667776
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=1.5e-14 Score=122.96 Aligned_cols=196 Identities=14% Similarity=0.195 Sum_probs=150.8
Q ss_pred eEEEEECCCCCEEEEEeCC--CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCcee
Q 015438 127 AYVSQFSADGSLFVAGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (407)
Q Consensus 127 v~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~ 204 (407)
|--+-|+. .++|..+.+ +.++++++..+..+....... +|.++.++ .+.|+++-.+ .|+|||+++-+..
T Consensus 49 IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt----~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklL 119 (391)
T KOG2110|consen 49 IVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPT----SILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLL 119 (391)
T ss_pred EEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEecCC----ceEEEEEc--cceEEEEEcc-cEEEEecccceee
Confidence 33444553 455555443 459999998876665544333 59999985 4466666554 4999999988776
Q ss_pred ccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEee--CCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCC
Q 015438 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282 (407)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~ 282 (407)
..+.... .+...+.++++++.+.+++.-+ ..|.|.+||+.+-+.+..+.+|.+++.+++|+ ++|
T Consensus 120 hTI~t~~-------------~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs-~~G 185 (391)
T KOG2110|consen 120 HTIETTP-------------PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFS-PDG 185 (391)
T ss_pred hhhhccC-------------CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEEC-CCC
Confidence 6554332 1333577777777777888743 46899999999999999999999999999998 999
Q ss_pred CEEEEEeCCCc-EEEEeCcccCCCCceeeeeccc--cCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 015438 283 HLIYSGSDDNL-CKVWDRRCLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (407)
Q Consensus 283 ~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 349 (407)
.+|||++..|+ ||||.+. +++.+..++.- ...|.+++|+|++.+|++.|..++|.+|.+....
T Consensus 186 ~llATASeKGTVIRVf~v~----~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 186 TLLATASEKGTVIRVFSVP----EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CEEEEeccCceEEEEEEcC----CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999999884 8999998 88999888743 3358999999999999999999999999998654
No 201
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.70 E-value=2e-15 Score=122.49 Aligned_cols=227 Identities=15% Similarity=0.131 Sum_probs=158.7
Q ss_pred eeeeeccCCCCcccc-cCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeee---------------------
Q 015438 107 MLSRYLPVNGPWPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL--------------------- 164 (407)
Q Consensus 107 ~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------- 164 (407)
.+|.+........++ .|...|+.+.--|+ ..+.+-+.|..+.+|++.-+.-+.....
T Consensus 38 ~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eq 116 (323)
T KOG0322|consen 38 KMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQ 116 (323)
T ss_pred EEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchh
Confidence 355655555555666 67788999998887 4577777899999998765211100000
Q ss_pred ---c--------------------------cccceEEEEEEECC-CC--CeEEEEeCCCeEEEEECCCCceecccccccc
Q 015438 165 ---A--------------------------KSLRWTVTDTSLSP-DQ--RHLVYASMSPIVHIVDVGSGTMESLANVTEI 212 (407)
Q Consensus 165 ---~--------------------------~~~~~~v~~~~~sp-~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 212 (407)
. ....+.+.+..|.. ++ -++++|-.+|.+.+||+.++..+-.++ ..
T Consensus 117 ll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~--~~ 194 (323)
T KOG0322|consen 117 LLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP--QS 194 (323)
T ss_pred heecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc--cc
Confidence 0 01112344444322 12 245667789999999999874321111 10
Q ss_pred ccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC--e--eeeeeeccCCCeEEEEecCCCCCEEEEE
Q 015438 213 HDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--K--LSLRILAHTSDVNTVCFGDESGHLIYSG 288 (407)
Q Consensus 213 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~--~~~~~~~~~~~v~~i~~s~~~~~~l~s~ 288 (407)
. ........|..+|.++.|.+.-..=++|+.+..+.+|.+... . .-..+......|..+.+- +++++++++
T Consensus 195 ~----kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIR-pD~KIlATA 269 (323)
T KOG0322|consen 195 S----KVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIR-PDGKILATA 269 (323)
T ss_pred c----ccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEc-cCCcEEeec
Confidence 0 001122347779999999986666677888888999988643 2 112223334568888995 899999999
Q ss_pred eCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 015438 289 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (407)
Q Consensus 289 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~ 345 (407)
+.|+.||||..+ +..++..+.-|...|.+++|+|+...+|++++|++|.+|++
T Consensus 270 GWD~RiRVyswr----tl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 270 GWDHRIRVYSWR----TLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCcEEEEEec----cCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999 89999999999999999999999999999999999999986
No 202
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.5e-14 Score=133.55 Aligned_cols=205 Identities=16% Similarity=0.133 Sum_probs=138.3
Q ss_pred CCCCcccccCCCceEEEEECCCCCEEEEEeC---CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEE-eC
Q 015438 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SM 189 (407)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~ 189 (407)
+.....+..+...+...+|||||+.|+..+. +..|.+|++.++... ....... .+..+.|+|||+.|+.. +.
T Consensus 188 g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~---~~~~~~~SPDG~~La~~~~~ 263 (429)
T PRK03629 188 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPR---HNGAPAFSPDGSKLAFALSK 263 (429)
T ss_pred CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCC---CcCCeEECCCCCEEEEEEcC
Confidence 3445556667788999999999999987542 457999999887432 2222222 24568999999988865 34
Q ss_pred CC--eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC-C--eEEEEEcCCCeeeee
Q 015438 190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLR 264 (407)
Q Consensus 190 dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~ 264 (407)
+| .|++||+.++....+.. +...+....|+|||+.|+..+.+ + .|+++|+.+++. ..
T Consensus 264 ~g~~~I~~~d~~tg~~~~lt~-----------------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 264 TGSLNLYVMDLASGQIRQVTD-----------------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred CCCcEEEEEECCCCCEEEccC-----------------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EE
Confidence 44 58999998876543322 11246678999999988877654 3 566667776654 34
Q ss_pred eeccCCCeEEEEecCCCCCEEEEEeCC---CcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCc--
Q 015438 265 ILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-- 339 (407)
Q Consensus 265 ~~~~~~~v~~i~~s~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~-- 339 (407)
+...........|+ ++|++|+..+.+ ..|.+||+. .+.. ..+... .......|+|||++|+.++.++.
T Consensus 326 lt~~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~----~g~~-~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~ 398 (429)
T PRK03629 326 ITWEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLA----TGGV-QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGS 398 (429)
T ss_pred eecCCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECC----CCCe-EEeCCC-CCCCCceECCCCCEEEEEEcCCCce
Confidence 44444556678998 778877766543 358889986 4433 333321 22346789999999999987765
Q ss_pred -EEEEECCC
Q 015438 340 -IKLWDIRK 347 (407)
Q Consensus 340 -i~iwd~~~ 347 (407)
+.++++..
T Consensus 399 ~l~~~~~~G 407 (429)
T PRK03629 399 VLNLVSTDG 407 (429)
T ss_pred EEEEEECCC
Confidence 66677643
No 203
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.5e-16 Score=139.92 Aligned_cols=214 Identities=19% Similarity=0.216 Sum_probs=153.0
Q ss_pred eccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeC--CCCE
Q 015438 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRE 241 (407)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~ 241 (407)
.+.+|.+.|.++.|+.+|.+|++|+.|-.+.|||.-..+....+ ..||...|.++.|-| +.++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI---------------~TgHtaNIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI---------------STGHTANIFSVKFVPYTNNRI 109 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee---------------ecccccceeEEeeeccCCCeE
Confidence 45789999999999999999999999999999998755544333 226888999999999 4568
Q ss_pred EEEeeCCCeEEEEEcCCC----------eeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCC---CCce
Q 015438 242 LVAGSSDDCIYVYDLEAN----------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV---KGKP 308 (407)
Q Consensus 242 l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~---~~~~ 308 (407)
+++|..|..|+++|+... .....+..|...|..|+..|..++.+.+++.||+|+-+|+|.... ...+
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~ 189 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC 189 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc
Confidence 999999999999999842 234456678899999999877779999999999999999994211 0101
Q ss_pred e---eeeccccCCeEEEEecCC-CCEEEEEeCCCcEEEEECCCCCCcc------------------cccCCCc-------
Q 015438 309 A---GVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNA------------------SCNLGFR------- 359 (407)
Q Consensus 309 ~---~~~~~~~~~i~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~------------------~~~~~~~------- 359 (407)
. ..+....-...++..+|. ..+|+.|+.|-..++||.+...+.. .+..++.
T Consensus 190 ~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~ 269 (758)
T KOG1310|consen 190 PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNL 269 (758)
T ss_pred cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccc
Confidence 1 111122234678889985 5789999999999999965432211 1111111
Q ss_pred -cccccceeeeCCCCCCcc-CCCCCcceEEEeCCc
Q 015438 360 -SYEWDYRWMDYPPQARDL-KHPCDQSVATYKGHS 392 (407)
Q Consensus 360 -~~~~~v~~~~~~~~~~~l-~~~~~~~v~~~~gh~ 392 (407)
......++++|+|+|.-| ..-+++.|..|+-|.
T Consensus 270 ~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 270 DRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred ccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 111225778889987444 444566777776554
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=1.2e-14 Score=138.57 Aligned_cols=270 Identities=16% Similarity=0.090 Sum_probs=179.2
Q ss_pred ceeeeeccCCCCcccccC---CCceEEEEECC--CCCEEEEEeCCCeEEEEEcCCC-----eEEeEeeecc----ccceE
Q 015438 106 HMLSRYLPVNGPWPVDQT---TSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERG-----WKIQKDILAK----SLRWT 171 (407)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h---~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~----~~~~~ 171 (407)
+.+|++...+...-+..+ ...|..+.+-. |..++++|+.||.|+||+-... +.+....... ...+.
T Consensus 1088 i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~ 1167 (1387)
T KOG1517|consen 1088 IRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGT 1167 (1387)
T ss_pred EEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCC
Confidence 445555444443333332 46788888876 3467999999999999974322 1111111111 11111
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeC-CCCEEEEeeCCCe
Q 015438 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDC 250 (407)
Q Consensus 172 v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~ 250 (407)
=.-+.|.....+|++++.-..|+|||+.......-.... -...|+++.-+. .|+.|++|..||.
T Consensus 1168 ~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~---------------s~t~vTaLS~~~~~gn~i~AGfaDGs 1232 (1387)
T KOG1517|consen 1168 GLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG---------------SSTLVTALSADLVHGNIIAAGFADGS 1232 (1387)
T ss_pred CeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC---------------CCccceeecccccCCceEEEeecCCc
Confidence 133577777777777777889999999876654333221 122566666554 4689999999999
Q ss_pred EEEEEcCCCe---eeeeeeccCCC--eEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeecccc--C-CeEEE
Q 015438 251 IYVYDLEANK---LSLRILAHTSD--VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL--E-GITFI 322 (407)
Q Consensus 251 i~i~d~~~~~---~~~~~~~~~~~--v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~-~i~~~ 322 (407)
|++||.+... .+...+.|... |..+.+.+..-..|++|+.||.|++||+|.. ..........|. + ..+++
T Consensus 1233 vRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~--~~e~~~~iv~~~~yGs~lTal 1310 (1387)
T KOG1517|consen 1233 VRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS--SKETFLTIVAHWEYGSALTAL 1310 (1387)
T ss_pred eEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC--cccccceeeeccccCccceee
Confidence 9999998653 45667788877 9999997423335899999999999999943 111122222232 3 48999
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCCCCcccc--cCCCccccccceeeeCCCCCCccCCC-CCcceEEEeCCcc
Q 015438 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASC--NLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYKGHSV 393 (407)
Q Consensus 323 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~gh~~ 393 (407)
..+++...+|+|+. +.|+||++...+..... ..........+.+++|+|..-+++++ .|..|.+|.-+..
T Consensus 1311 ~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1311 TVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 99999999999998 99999998754332211 11133455667999999998888766 5788888877654
No 205
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.8e-14 Score=115.65 Aligned_cols=198 Identities=12% Similarity=0.201 Sum_probs=143.7
Q ss_pred cccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCe------EEeEeeecc----ccceEEEEEEECCCCCeEEEEeC
Q 015438 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW------KIQKDILAK----SLRWTVTDTSLSPDQRHLVYASM 189 (407)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~ 189 (407)
..+|.++|+.++|. ..+|++|+ ||.|+=|...... ++....... ...-.|+++...|..+-++.++.
T Consensus 58 eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG 134 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG 134 (325)
T ss_pred ccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC
Confidence 37999999999999 35566664 6999988754321 111111110 01124889999998888888889
Q ss_pred CCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccC
Q 015438 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (407)
Q Consensus 190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 269 (407)
|+.++-||+++++....++ ||+..|.++.--.....+++|++||++++||+++++.+..+....
T Consensus 135 D~~~y~~dlE~G~i~r~~r----------------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk 198 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYR----------------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYK 198 (325)
T ss_pred CeEEEEEEecCCEEEEEEc----------------CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecccc
Confidence 9999999999998766554 688899999885555579999999999999999999887765322
Q ss_pred ----------CCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCc
Q 015438 270 ----------SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 339 (407)
Q Consensus 270 ----------~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~ 339 (407)
..|.+++. +..+|++|+ ...+.+|++| ...+...+. ...++..+.|. ...+++++..+.
T Consensus 199 ~~~~lRp~~g~wigala~---~edWlvCGg-Gp~lslwhLr----sse~t~vfp-ipa~v~~v~F~--~d~vl~~G~g~~ 267 (325)
T KOG0649|consen 199 NPNLLRPDWGKWIGALAV---NEDWLVCGG-GPKLSLWHLR----SSESTCVFP-IPARVHLVDFV--DDCVLIGGEGNH 267 (325)
T ss_pred ChhhcCcccCceeEEEec---cCceEEecC-CCceeEEecc----CCCceEEEe-cccceeEeeee--cceEEEeccccc
Confidence 22445544 466776665 4589999999 555555553 34567788884 456888888889
Q ss_pred EEEEECCC
Q 015438 340 IKLWDIRK 347 (407)
Q Consensus 340 i~iwd~~~ 347 (407)
|.-|.+.-
T Consensus 268 v~~~~l~G 275 (325)
T KOG0649|consen 268 VQSYTLNG 275 (325)
T ss_pred eeeeeecc
Confidence 99998775
No 206
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=5.1e-14 Score=127.69 Aligned_cols=209 Identities=11% Similarity=0.099 Sum_probs=134.2
Q ss_pred CceEEEEECCCCCEEEEEeC-CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEe-CCCeEEEEECCCCc
Q 015438 125 SRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGT 202 (407)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~i~vwd~~~~~ 202 (407)
+....++|+|+++++++++. ++.|.+|++++...+........+......++++|+++++++++ .++.|.+||+.+..
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 34678999999998888764 78999999974211111111111222367788999999887655 56899999997633
Q ss_pred eecc-ccc-cccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC-CCeEEEEEcCC--Ce--eeeeeecc------C
Q 015438 203 MESL-ANV-TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA--NK--LSLRILAH------T 269 (407)
Q Consensus 203 ~~~~-~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~--~~--~~~~~~~~------~ 269 (407)
.... ... .... .......+.|+|+|++++++.. ++.|.+||+.. ++ .+..+... .
T Consensus 160 ~l~~~~~~~~~~~------------~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 160 HLVAQEPAEVTTV------------EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred cccccCCCceecC------------CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 2110 000 0000 0113567899999999988876 89999999973 22 23333221 1
Q ss_pred CCeEEEEecCCCCCEEEEEe-CCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeC-CCcEEEEECCC
Q 015438 270 SDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRK 347 (407)
Q Consensus 270 ~~v~~i~~s~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-dg~i~iwd~~~ 347 (407)
.....+.++ +++++++++. .++.|.+|++.......+.+..... ......+.++|+|++|+++.. +++|.+|+++.
T Consensus 228 ~~~~~i~~~-pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 228 RWAADIHIT-PDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred ccceeEEEC-CCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 123468897 7888888875 4789999998621111112222211 124567899999999998775 89999998864
No 207
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=2e-15 Score=134.63 Aligned_cols=197 Identities=14% Similarity=0.094 Sum_probs=149.9
Q ss_pred CCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCC-------eEEeEeeeccccceEEEEEEECCCCCeEEE
Q 015438 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-------WKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (407)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 186 (407)
.++.+.+.+|.++|.|++..+++..+++|+.||+|+.|++... ....-.-...+|...|+.+++|+....|++
T Consensus 334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls 413 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS 413 (577)
T ss_pred eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee
Confidence 3456788999999999999999999999999999999965421 111112245678889999999999999999
Q ss_pred EeCCCeEEEEECCCCceeccccccc---cccceeeeecC----------------------------C-----CCccccE
Q 015438 187 ASMSPIVHIVDVGSGTMESLANVTE---IHDGLDFSAAD----------------------------D-----GGYSFGI 230 (407)
Q Consensus 187 ~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~----------------------------~-----~~~~~~v 230 (407)
++.||++++|+...... ..+.... .+-.+++.... . ......+
T Consensus 414 cs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~i 492 (577)
T KOG0642|consen 414 CSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQI 492 (577)
T ss_pred ecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCcc
Confidence 99999999999876554 1111110 00011110000 0 0112356
Q ss_pred EEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceee
Q 015438 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 310 (407)
Q Consensus 231 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 310 (407)
.-+.++|.+.+.+++..|+.|+++|..+++++.....|...++++++- ++|-+|++++.|+.+++|.+. ...++.
T Consensus 493 n~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~-~ng~~l~s~s~d~sv~l~kld----~k~~~~ 567 (577)
T KOG0642|consen 493 NKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAID-PNGPYLMSGSHDGSVRLWKLD----VKTCVL 567 (577)
T ss_pred ceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeec-CCCceEEeecCCceeehhhcc----chheee
Confidence 778899999999999999999999999999999999999999999996 889999999999999999997 555555
Q ss_pred eecccc
Q 015438 311 VLMGHL 316 (407)
Q Consensus 311 ~~~~~~ 316 (407)
....|.
T Consensus 568 es~~~r 573 (577)
T KOG0642|consen 568 ESTAHR 573 (577)
T ss_pred cccccc
Confidence 555443
No 208
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=7.6e-14 Score=131.03 Aligned_cols=208 Identities=17% Similarity=0.123 Sum_probs=142.1
Q ss_pred cCCCCcccccCCCceEEEEECCCCCEEEEEeC---CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEE-Ee
Q 015438 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-AS 188 (407)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~ 188 (407)
.+..+..+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.... . ..+.+.+....|+|||+.|+. .+
T Consensus 190 dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l---~~~~g~~~~~~~SPDG~~la~~~~ 265 (435)
T PRK05137 190 DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-V---GNFPGMTFAPRFSPDGRKVVMSLS 265 (435)
T ss_pred CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-e---ecCCCcccCcEECCCCCEEEEEEe
Confidence 45556677788899999999999999888754 4689999998874422 1 123335778899999998764 44
Q ss_pred CCC--eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC-C--CeEEEEEcCCCeeee
Q 015438 189 MSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D--DCIYVYDLEANKLSL 263 (407)
Q Consensus 189 ~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--g~i~i~d~~~~~~~~ 263 (407)
.++ .|++||+.++....+.. +........|+|||+.|+..+. + ..|+++|+.+++. .
T Consensus 266 ~~g~~~Iy~~d~~~~~~~~Lt~-----------------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~ 327 (435)
T PRK05137 266 QGGNTDIYTMDLRSGTTTRLTD-----------------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-R 327 (435)
T ss_pred cCCCceEEEEECCCCceEEccC-----------------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-E
Confidence 554 48888988776543321 1123556899999998887764 2 3689999876654 3
Q ss_pred eeeccCCCeEEEEecCCCCCEEEEEeCC---CcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCC---
Q 015438 264 RILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD--- 337 (407)
Q Consensus 264 ~~~~~~~~v~~i~~s~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d--- 337 (407)
.+..+...+....|+ ++++.|+..+.+ ..|.+||+. .+ ....+. ....+..+.|+|||++|+..+.+
T Consensus 328 ~lt~~~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~----~~-~~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~ 400 (435)
T PRK05137 328 RISFGGGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPD----GS-GERILT-SGFLVEGPTWAPNGRVIMFFRQTPGS 400 (435)
T ss_pred EeecCCCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECC----CC-ceEecc-CCCCCCCCeECCCCCEEEEEEccCCC
Confidence 444445567778998 778887766543 367888874 22 233332 22346778999999998766542
Q ss_pred ---CcEEEEECCCCC
Q 015438 338 ---QAIKLWDIRKMS 349 (407)
Q Consensus 338 ---g~i~iwd~~~~~ 349 (407)
..+.++|+....
T Consensus 401 ~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 401 GGAPKLYTVDLTGRN 415 (435)
T ss_pred CCcceEEEEECCCCc
Confidence 257777876543
No 209
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=6.9e-14 Score=131.15 Aligned_cols=206 Identities=17% Similarity=0.107 Sum_probs=139.2
Q ss_pred cCCCCcccccCCCceEEEEECCCCCEEEEEeC---CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEE-Ee
Q 015438 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-AS 188 (407)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~ 188 (407)
....+..+..+...+.+.+|+|||+.|+.++. ...|.+||+.++.... .... .+...++.|+|||+.|+. .+
T Consensus 192 ~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~---~g~~~~~~~SpDG~~l~~~~s 267 (433)
T PRK04922 192 DGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASF---RGINGAPSFSPDGRRLALTLS 267 (433)
T ss_pred CCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccC---CCCccCceECCCCCEEEEEEe
Confidence 34556667778889999999999999998764 3469999998874322 1112 223557899999998764 44
Q ss_pred CCC--eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC-CC--eEEEEEcCCCeeee
Q 015438 189 MSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVYDLEANKLSL 263 (407)
Q Consensus 189 ~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~~ 263 (407)
.+| .|++||+.++....+.. +.......+|+|||+.|+.++. +| .|+++|+.+++..
T Consensus 268 ~~g~~~Iy~~d~~~g~~~~lt~-----------------~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~- 329 (433)
T PRK04922 268 RDGNPEIYVMDLGSRQLTRLTN-----------------HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE- 329 (433)
T ss_pred CCCCceEEEEECCCCCeEECcc-----------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-
Confidence 555 69999998876543321 1113456899999998887764 34 4778888776543
Q ss_pred eeeccCCCeEEEEecCCCCCEEEEEeCCC---cEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCC---
Q 015438 264 RILAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD--- 337 (407)
Q Consensus 264 ~~~~~~~~v~~i~~s~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d--- 337 (407)
.+..+......++|+ ++++.|+..+.++ .|.+||+. .+... .+. +......+.|+|||++|+..+.+
T Consensus 330 ~lt~~g~~~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~----~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~ 402 (433)
T PRK04922 330 RLTFQGNYNARASVS-PDGKKIAMVHGSGGQYRIAVMDLS----TGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGR 402 (433)
T ss_pred EeecCCCCccCEEEC-CCCCEEEEEECCCCceeEEEEECC----CCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCc
Confidence 333334445578998 7888887665433 69999986 44443 333 22244567899999988877653
Q ss_pred CcEEEEECCC
Q 015438 338 QAIKLWDIRK 347 (407)
Q Consensus 338 g~i~iwd~~~ 347 (407)
+.|.++++..
T Consensus 403 ~~L~~~~~~g 412 (433)
T PRK04922 403 GVLAAVSTDG 412 (433)
T ss_pred eEEEEEECCC
Confidence 3577777754
No 210
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.2e-14 Score=124.20 Aligned_cols=217 Identities=15% Similarity=0.189 Sum_probs=161.2
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEE-EEeCC--CeEEEEECC
Q 015438 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMS--PIVHIVDVG 199 (407)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d--g~i~vwd~~ 199 (407)
-.++|..++.. + ..|++|-.+|.+.+|..+.+..-............+..+.-++....++ +|+.. ..+.+||++
T Consensus 104 ~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 104 GTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred ccccccchhhc-C-CEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 35566666654 2 3577788899999999885421111111111122477777777665555 58888 789999999
Q ss_pred CCceecccccccccc-ceeeeecCCCCccccEEEEEEeCC--CCEEEEeeCCCeEEEEEcCCC-eeeeeeeccCCCeEEE
Q 015438 200 SGTMESLANVTEIHD-GLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTV 275 (407)
Q Consensus 200 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i 275 (407)
..+. ++......+ .+.+. -.-+++++.|-+. ...|++++.-+.|++||.+.+ +++..+.-...+++++
T Consensus 182 ~~~q--iw~aKNvpnD~L~Lr------VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~ 253 (412)
T KOG3881|consen 182 QSKQ--IWSAKNVPNDRLGLR------VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST 253 (412)
T ss_pred ccee--eeeccCCCCccccce------eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence 7733 322222211 11111 1126788999987 789999999999999999865 5778888788999999
Q ss_pred EecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeee-eccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccc
Q 015438 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 276 ~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (407)
... ++++++++|..-+.+..||+| .++.+.. +.+..+.|+++..+|.+++|+++|-|..|||+|+.+.+.+..+
T Consensus 254 ~l~-p~gn~Iy~gn~~g~l~~FD~r----~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 254 GLT-PSGNFIYTGNTKGQLAKFDLR----GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred eec-CCCcEEEEecccchhheeccc----CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 997 899999999999999999999 7777666 8888999999999999999999999999999999997766544
No 211
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=5.9e-14 Score=117.06 Aligned_cols=237 Identities=15% Similarity=0.185 Sum_probs=158.0
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEE-EeCC------CeEEEEECC
Q 015438 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMS------PIVHIVDVG 199 (407)
Q Consensus 127 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d------g~i~vwd~~ 199 (407)
...++|+.|...+++|..+| .+||+.+--+.........+ .-.+..+-| ..++|+. |+.+ ..|.|||=.
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~-G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDG-GFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccC-chhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 44589999999999887665 99999865211111111111 112333333 2344443 4333 479999954
Q ss_pred CCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcC-CCeeeeeeecc--CCCeEEEE
Q 015438 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAH--TSDVNTVC 276 (407)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~--~~~v~~i~ 276 (407)
...+...+. ...+|.++.+.++ .|++.. .+.|++|... ..+.++.+... ...+.+++
T Consensus 84 k~~~i~el~-----------------f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 84 KERCIIELS-----------------FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred cCcEEEEEE-----------------eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence 444333322 2237999999765 566665 4579999987 44555555432 23344444
Q ss_pred ecCCCCCEEEEE-eCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCc-EEEEECCCCCCcccc
Q 015438 277 FGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IKLWDIRKMSSNASC 354 (407)
Q Consensus 277 ~s~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~ 354 (407)
-+ .+..+|+.= -.-|.|.|-|+.... ..+-..+.+|.+.|.+++.+.+|..+||+|..|+ |||||..+++.+.++
T Consensus 144 ~~-~~k~~LafPg~k~GqvQi~dL~~~~--~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~ 220 (346)
T KOG2111|consen 144 PT-SNKSLLAFPGFKTGQVQIVDLASTK--PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL 220 (346)
T ss_pred CC-CCceEEEcCCCccceEEEEEhhhcC--cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee
Confidence 33 333444443 356999999997321 1134678899999999999999999999999998 999999999999887
Q ss_pred cCCCccccccceeeeCCCCCCccCCCCC-cceEEEeCCc
Q 015438 355 NLGFRSYEWDYRWMDYPPQARDLKHPCD-QSVATYKGHS 392 (407)
Q Consensus 355 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~v~~~~gh~ 392 (407)
..+ ....++.+|+|||+..+|++++| +++++|.-+.
T Consensus 221 RRG--~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 221 RRG--VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ecC--CchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 443 34567899999999999988765 8999998664
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=5.1e-13 Score=111.55 Aligned_cols=178 Identities=17% Similarity=0.224 Sum_probs=129.0
Q ss_pred CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCC-ceeccccccccccceeeeecCCC
Q 015438 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDG 224 (407)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 224 (407)
+.|.|||-....++..... ..+|.++.+.++ .|++. ..+.|+||..... +....+.....+
T Consensus 75 NkviIWDD~k~~~i~el~f----~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NP----------- 136 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSF----NSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNP----------- 136 (346)
T ss_pred ceEEEEecccCcEEEEEEe----ccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCC-----------
Confidence 4699999555544444332 336999999765 45554 4578999998733 322222211111
Q ss_pred CccccEEEEEEeCCCCEEEE-eeCCCeEEEEEcCCCee--eeeeeccCCCeEEEEecCCCCCEEEEEeCCCc-EEEEeCc
Q 015438 225 GYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKL--SLRILAHTSDVNTVCFGDESGHLIYSGSDDNL-CKVWDRR 300 (407)
Q Consensus 225 ~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~-i~vwd~~ 300 (407)
....+++-..+..+||. |-.-|.|.|-|+...+. ...+.+|.+.|.|++.+ .+|.++||+|..|+ |||||..
T Consensus 137 ---kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 137 ---KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALN-LQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred ---CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEc-CCccEEEEeccCcEEEEEEEcC
Confidence 12434443334445554 45679999999987655 46778999999999998 89999999999885 8999998
Q ss_pred ccCCCCceeeeeccc--cCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 015438 301 CLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (407)
Q Consensus 301 ~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 349 (407)
++.++..++.- ...|.+++|||++.+|+++|+.|+|.|+.++...
T Consensus 213 ----~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 213 ----DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ----CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 88999888632 3469999999999999999999999999998644
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.3e-13 Score=115.49 Aligned_cols=205 Identities=21% Similarity=0.203 Sum_probs=136.7
Q ss_pred CCCceEEEEECCCC-CEEEEEeCCCeEEEEEcCCCeEE-----------eEeeeccccceEEEEEEECCCCCeEEEEe-C
Q 015438 123 TTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKI-----------QKDILAKSLRWTVTDTSLSPDQRHLVYAS-M 189 (407)
Q Consensus 123 h~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~ 189 (407)
-...|+|++|-|.+ .-|+.|+. +-|.||..+..-.. .......+| .+|+++.|.+||..+++++ .
T Consensus 139 sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred hhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence 36789999999965 56777766 45999987532111 111223344 5799999999999999987 4
Q ss_pred CCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccC
Q 015438 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (407)
Q Consensus 190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 269 (407)
|..|.|||..++....+... ..+.+.-+.|||||.+|++++-|+..++|...............
T Consensus 217 sssi~iWdpdtg~~~pL~~~----------------glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs 280 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPK----------------GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS 280 (445)
T ss_pred cceEEEEcCCCCCccccccc----------------CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC
Confidence 56899999999987766522 11268889999999999999999999999654333223333456
Q ss_pred CCeEEEEecCCCCC-EEEEEeCCCcEEEEeCcccC--CCCc------ee---eeec------c---ccCCeEEEEecCCC
Q 015438 270 SDVNTVCFGDESGH-LIYSGSDDNLCKVWDRRCLN--VKGK------PA---GVLM------G---HLEGITFIDSRGDG 328 (407)
Q Consensus 270 ~~v~~i~~s~~~~~-~l~s~~~d~~i~vwd~~~~~--~~~~------~~---~~~~------~---~~~~i~~~~~s~~~ 328 (407)
+.|...+|+ +.|. +|++++.. -++|.+.... .... .+ ..+. + ..+++.+++|+|.|
T Consensus 281 grvqtacWs-pcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG 357 (445)
T KOG2139|consen 281 GRVQTACWS-PCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG 357 (445)
T ss_pred Cceeeeeec-CCCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC
Confidence 699999998 5555 44555443 3344332100 0000 01 0110 1 13578899999999
Q ss_pred CEEEEEeCCC--------cEEEEECCCC
Q 015438 329 RYLISNGKDQ--------AIKLWDIRKM 348 (407)
Q Consensus 329 ~~l~s~~~dg--------~i~iwd~~~~ 348 (407)
.+||+.-+.+ .|.+||.++.
T Consensus 358 eyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 358 EYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred CEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 9999876543 3777887764
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.64 E-value=5.2e-14 Score=136.18 Aligned_cols=261 Identities=11% Similarity=0.085 Sum_probs=174.4
Q ss_pred ccccCCCceEEEEECCCC-CEEEEEeCCCeEEEEEcCCC----eEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeE
Q 015438 119 PVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i 193 (407)
.+..|...|..++.++.. .+|++|+.||+|++|+...- ..............++.++.+.+.+..+|+++.||.|
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 456788999999988765 99999999999999998642 1122222233245578999999999999999999999
Q ss_pred EEEECCCCceeccccccccccceeeeecCCCCccccEEE-EEEeC-CCC-EEEEeeCCCeEEEEEcCCCeeeeee--ecc
Q 015438 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS-LKFST-DGR-ELVAGSSDDCIYVYDLEANKLSLRI--LAH 268 (407)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~--~~~ 268 (407)
++.+++.............. ......+.+.+ -+|.. .+. .++.+...+.|..||+++....-.+ ...
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri--------~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRI--------PNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EEEEccccccccceeeeeec--------ccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 99999763111111000000 00011112333 33332 233 7888889999999999987654433 245
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeec-cccCCeEEEEecC---CCCEEEEEe--CCCcEEE
Q 015438 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRG---DGRYLISNG--KDQAIKL 342 (407)
Q Consensus 269 ~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~i~~~~~s~---~~~~l~s~~--~dg~i~i 342 (407)
.+.|++++.+ +.++++++|+..|.+.+||+| -+.++..+. ++..+|..+..+| .....++++ ..+.|.+
T Consensus 1195 hG~vTSi~id-p~~~WlviGts~G~l~lWDLR----F~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1195 HGLVTSIVID-PWCNWLVIGTSRGQLVLWDLR----FRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred ccceeEEEec-CCceEEEEecCCceEEEEEee----cCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 6789999997 888899999999999999999 777777664 4456788877765 334555554 4778999
Q ss_pred EECCCCCCcccccCC--C--------------ccccccceeeeCCCCCCccCCCCCcceEEEeCCc
Q 015438 343 WDIRKMSSNASCNLG--F--------------RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS 392 (407)
Q Consensus 343 wd~~~~~~~~~~~~~--~--------------~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh~ 392 (407)
|++.++.....+... . ......+.+..-.+.+-++..+.|..|+.|+--.
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 999998655444221 0 1111122233334556677778888888887554
No 215
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.64 E-value=4.8e-14 Score=116.36 Aligned_cols=153 Identities=19% Similarity=0.264 Sum_probs=109.2
Q ss_pred EEEEECCCCCeEEEEeC----------CCeEEEEECCCCc-eeccccccccccceeeeecCCCCccccEEEEEEeCCCCE
Q 015438 173 TDTSLSPDQRHLVYASM----------SPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (407)
Q Consensus 173 ~~~~~sp~~~~l~~~~~----------dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 241 (407)
..+.|+|+|++|++-.. -+...+|.++... ......+ ...++|.+++|+|+|+.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l---------------~~~~~I~~~~WsP~g~~ 73 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL---------------KKEGPIHDVAWSPNGNE 73 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec---------------cCCCceEEEEECcCCCE
Confidence 35789999988876433 1234555553221 1111111 12236999999999998
Q ss_pred EEEe--eCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCC---CcEEEEeCcccCCCCceeeeecccc
Q 015438 242 LVAG--SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHL 316 (407)
Q Consensus 242 l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~ 316 (407)
|++. ..++.|.+||++ ++.+..+ +...+..|.|+ |+|++|++++.+ |.|.+||.+ +.+.+.... |
T Consensus 74 favi~g~~~~~v~lyd~~-~~~i~~~--~~~~~n~i~ws-P~G~~l~~~g~~n~~G~l~~wd~~----~~~~i~~~~-~- 143 (194)
T PF08662_consen 74 FAVIYGSMPAKVTLYDVK-GKKIFSF--GTQPRNTISWS-PDGRFLVLAGFGNLNGDLEFWDVR----KKKKISTFE-H- 143 (194)
T ss_pred EEEEEccCCcccEEEcCc-ccEeEee--cCCCceEEEEC-CCCCEEEEEEccCCCcEEEEEECC----CCEEeeccc-c-
Confidence 7654 456799999997 6666665 35678899998 889999998754 679999998 677776654 3
Q ss_pred CCeEEEEecCCCCEEEEEeC------CCcEEEEECCCCCCc
Q 015438 317 EGITFIDSRGDGRYLISNGK------DQAIKLWDIRKMSSN 351 (407)
Q Consensus 317 ~~i~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~ 351 (407)
..++.++|+|||++|++++. |+.++||+.. ++.+
T Consensus 144 ~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l 183 (194)
T PF08662_consen 144 SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLL 183 (194)
T ss_pred CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEe
Confidence 35789999999999999874 7889999985 4443
No 216
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.63 E-value=2.1e-14 Score=134.02 Aligned_cols=218 Identities=11% Similarity=0.025 Sum_probs=158.6
Q ss_pred cccCCCceEEEEECCCCCE--EEEEeCCCeEEEEEcCCCeEEeEeee---cc------ccceEEEEEEECC-CCCeEEEE
Q 015438 120 VDQTTSRAYVSQFSADGSL--FVAGFQASQIRIYDVERGWKIQKDIL---AK------SLRWTVTDTSLSP-DQRHLVYA 187 (407)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~---~~------~~~~~v~~~~~sp-~~~~l~~~ 187 (407)
...|..+|..+.|-.+..- |++++.||.|..|+++.-........ .. .....+++++|.+ +-..+++|
T Consensus 287 ~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG 366 (555)
T KOG1587|consen 287 EVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVG 366 (555)
T ss_pred cccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEE
Confidence 3578999999999876555 99999999999998764211111000 00 1223588999988 45678899
Q ss_pred eCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcC-CCeeeeeee
Q 015438 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRIL 266 (407)
Q Consensus 188 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~ 266 (407)
+..|.|..-+-........ .....+. ....|.+.|.++.++|-+..++..+.|-+|+||... ...++..+.
T Consensus 367 Te~G~v~~~~r~g~~~~~~-~~~~~~~-------~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~ 438 (555)
T KOG1587|consen 367 TEEGKVYKGCRKGYTPAPE-VSYKGHS-------TFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD 438 (555)
T ss_pred cCCcEEEEEeccCCccccc-ccccccc-------cccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh
Confidence 9999887744332221110 0001000 122467799999999977655444459999999988 677888887
Q ss_pred ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 015438 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (407)
Q Consensus 267 ~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~ 346 (407)
.+...|++++|||.....|+++..||.|.+||+... ...++.+..-+....+.+.|+++|+.|+.|...|++.+|++.
T Consensus 439 ~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~--~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 439 SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD--DEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred hccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc--ccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 888889999999988999999999999999999743 345555555556667888899999999999999999999996
Q ss_pred C
Q 015438 347 K 347 (407)
Q Consensus 347 ~ 347 (407)
.
T Consensus 517 ~ 517 (555)
T KOG1587|consen 517 E 517 (555)
T ss_pred c
Confidence 4
No 217
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.62 E-value=3.1e-14 Score=118.76 Aligned_cols=209 Identities=11% Similarity=0.076 Sum_probs=151.0
Q ss_pred CCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeE
Q 015438 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (407)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i 193 (407)
-+...++..|...|++++|+|..+.|++++.|..-++|....+...........++..++++.|+|.++.||+|+....|
T Consensus 45 w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~i 124 (361)
T KOG1523|consen 45 WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLI 124 (361)
T ss_pred ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEE
Confidence 34567889999999999999999999999999999999984443444444455567789999999999999999999999
Q ss_pred EEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcC-----C----------
Q 015438 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-----A---------- 258 (407)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-----~---------- 258 (407)
.||-++...-=-+.+. ....+...|+++.|+|++-+|++|+.|+..++|..- .
T Consensus 125 sVcy~E~ENdWWVsKh------------ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk 192 (361)
T KOG1523|consen 125 SVCYYEQENDWWVSKH------------IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSK 192 (361)
T ss_pred EEEEEecccceehhhh------------hCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccC
Confidence 9998875432111110 011244579999999999999999999999998642 1
Q ss_pred ---CeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEe
Q 015438 259 ---NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (407)
Q Consensus 259 ---~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 335 (407)
|+.+..+....+.+..+.|+ ++|+.|+-.+.|..+.+-|.... .+.+.....-.-+..++.|-.+. .++.++
T Consensus 193 ~PFG~lm~E~~~~ggwvh~v~fs-~sG~~lawv~Hds~v~~~da~~p---~~~v~~~~~~~lP~ls~~~ise~-~vv~ag 267 (361)
T KOG1523|consen 193 MPFGQLMSEASSSGGWVHGVLFS-PSGNRLAWVGHDSTVSFVDAAGP---SERVQSVATAQLPLLSVSWISEN-SVVAAG 267 (361)
T ss_pred CcHHHHHHhhccCCCceeeeEeC-CCCCEeeEecCCCceEEeecCCC---chhccchhhccCCceeeEeecCC-ceeecC
Confidence 12233333456789999997 89999999999999999998621 11233333233566777775432 344455
Q ss_pred CCCc
Q 015438 336 KDQA 339 (407)
Q Consensus 336 ~dg~ 339 (407)
.|..
T Consensus 268 ~~c~ 271 (361)
T KOG1523|consen 268 YDCG 271 (361)
T ss_pred CCCC
Confidence 4533
No 218
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=4.6e-13 Score=125.80 Aligned_cols=272 Identities=15% Similarity=0.074 Sum_probs=179.9
Q ss_pred ccccceeeeeccCCCCcccccCCCceEEEEECCCCC---EEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEE------
Q 015438 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS---LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV------ 172 (407)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v------ 172 (407)
.+....+.....+.....+.+|..++..+.+.|... ++++++.+|.|++||...+..+............+
T Consensus 35 ~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a 114 (792)
T KOG1963|consen 35 TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQA 114 (792)
T ss_pred eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHh
Confidence 334444445555666778999999999999998654 67789999999999988774443322111000000
Q ss_pred -------------------------------------------------EEEEECCCCCeEEEEeCCCeEEEEECCCCce
Q 015438 173 -------------------------------------------------TDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (407)
Q Consensus 173 -------------------------------------------------~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~ 203 (407)
.++.+++.+.+.... .+..+.+|.......
T Consensus 115 ~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~~ 193 (792)
T KOG1963|consen 115 DISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV-HMCKIHIYFVPKHTK 193 (792)
T ss_pred CccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE-EeeeEEEEEecccce
Confidence 111111222211111 122344444433220
Q ss_pred eccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCC--C--eeeeeeeccCCCeEEEEecC
Q 015438 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--N--KLSLRILAHTSDVNTVCFGD 279 (407)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~--~--~~~~~~~~~~~~v~~i~~s~ 279 (407)
. . ........|...+++.+++|+++++++|..||.|.+|.--. . .....+..|...|.+++|+
T Consensus 194 ~-~-----------~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS- 260 (792)
T KOG1963|consen 194 H-T-----------SSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS- 260 (792)
T ss_pred e-e-----------ccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEe-
Confidence 0 0 00011124677789999999999999999999999996432 1 2335567899999999998
Q ss_pred CCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCc
Q 015438 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (407)
Q Consensus 280 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (407)
.+|.+|++|+..|.+.+|.+. +++ .+-+..-.++|..+.++||+.+.+....|+.|.+-...++....++..-..
T Consensus 261 ~~G~~LlSGG~E~VLv~Wq~~----T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~ 335 (792)
T KOG1963|consen 261 SDGAYLLSGGREGVLVLWQLE----TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP 335 (792)
T ss_pred cCCceEeecccceEEEEEeec----CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC
Confidence 899999999999999999997 555 333444678899999999999999999999999999987766555432111
Q ss_pred c-------ccccceeeeCCC-CCCccCCCCCcceEEEeCCc
Q 015438 360 S-------YEWDYRWMDYPP-QARDLKHPCDQSVATYKGHS 392 (407)
Q Consensus 360 ~-------~~~~v~~~~~~~-~~~~l~~~~~~~v~~~~gh~ 392 (407)
. ...-.+.+.++| .+.++..+.-+.|..|+-.+
T Consensus 336 ~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 336 PTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred CCccccccccccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence 1 122234566677 45666677778888887544
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.9e-14 Score=134.68 Aligned_cols=200 Identities=18% Similarity=0.198 Sum_probs=133.2
Q ss_pred CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCC---CeEEEEECCCCceeccccccccccceeeeec
Q 015438 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (407)
Q Consensus 145 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (407)
+..|.+||.+... ... ...+...+....|+|||+.|+.++.+ ..|++||+.++....+....
T Consensus 183 ~~~i~i~d~dg~~-~~~---lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~----------- 247 (429)
T PRK01742 183 PYEVRVADYDGFN-QFI---VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR----------- 247 (429)
T ss_pred eEEEEEECCCCCC-ceE---eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-----------
Confidence 4689999987653 222 23345578999999999999987653 47999999887643322111
Q ss_pred CCCCccccEEEEEEeCCCCEEEEee-CCCeE--EEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEe-CCCcEEEE
Q 015438 222 DDGGYSFGIFSLKFSTDGRELVAGS-SDDCI--YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVW 297 (407)
Q Consensus 222 ~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i--~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~-~d~~i~vw 297 (407)
+ ....++|+|||+.|++++ .+|.+ ++||+.+++. ..+..+...+..+.|+ ++++.|+.++ .++...||
T Consensus 248 ---g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~ 319 (429)
T PRK01742 248 ---G---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVY 319 (429)
T ss_pred ---C---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEE
Confidence 1 233589999999888764 57754 5557766654 5566677778899998 6777665544 67888888
Q ss_pred eCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCcc
Q 015438 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 377 (407)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 377 (407)
++.. .+.....+ .+.. ..+.|+|||++|+..+.++ +.+||+.+++..... .. +......|+|++++|
T Consensus 320 ~~~~---~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt-~~-----~~~~~~~~sPdG~~i 386 (429)
T PRK01742 320 RMSA---SGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS-ST-----FLDESPSISPNGIMI 386 (429)
T ss_pred EEEC---CCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec-CC-----CCCCCceECCCCCEE
Confidence 8752 22222222 3333 4578999999999888765 566999887643211 11 123456789999877
Q ss_pred CCC
Q 015438 378 KHP 380 (407)
Q Consensus 378 ~~~ 380 (407)
..+
T Consensus 387 ~~~ 389 (429)
T PRK01742 387 IYS 389 (429)
T ss_pred EEE
Confidence 754
No 220
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=6.5e-15 Score=129.24 Aligned_cols=213 Identities=16% Similarity=0.250 Sum_probs=161.9
Q ss_pred CCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC--CCCeEEEEeCCCeE
Q 015438 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIV 193 (407)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~dg~i 193 (407)
....|..|.+.|..+.|+..|..|++|+.|..|.+||...+..... ...+|...|....|-| +.+.+++++.||.+
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCce
Confidence 3456889999999999999999999999999999999987754433 4566777787778877 46789999999999
Q ss_pred EEEECC-CCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCCeeeeeee---cc
Q 015438 194 HIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL---AH 268 (407)
Q Consensus 194 ~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~ 268 (407)
++=.+. ++.......+ ..|.+.|..++.-|+. .-|.+++.|+.+.-+|+++..+...+. .+
T Consensus 212 r~s~i~~t~~~e~t~rl--------------~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~ 277 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRL--------------APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD 277 (559)
T ss_pred eeeeeccccceecceec--------------ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC
Confidence 987765 3333323322 2377789999999965 478999999999999999876543332 33
Q ss_pred CC---CeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCC--Cceeeeeccc------cCCeEEEEecCCCCEEEEEeCC
Q 015438 269 TS---DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK--GKPAGVLMGH------LEGITFIDSRGDGRYLISNGKD 337 (407)
Q Consensus 269 ~~---~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~~------~~~i~~~~~s~~~~~l~s~~~d 337 (407)
.. ....|+..|.+.+.+++|+.|-.+++||.|..... ..++..+..| ...|++++|+.++.-|.++-.|
T Consensus 278 ~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnD 357 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYND 357 (559)
T ss_pred CccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecc
Confidence 33 56789999888889999999999999999844211 1122333322 3469999999888888888889
Q ss_pred CcEEEEE
Q 015438 338 QAIKLWD 344 (407)
Q Consensus 338 g~i~iwd 344 (407)
-.|+++.
T Consensus 358 e~IYLF~ 364 (559)
T KOG1334|consen 358 EDIYLFN 364 (559)
T ss_pred cceEEec
Confidence 9999994
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=3.8e-13 Score=125.75 Aligned_cols=204 Identities=17% Similarity=0.096 Sum_probs=130.3
Q ss_pred cCCCCcccccCCCceEEEEECCCCCEEEEEeCC---CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEE-Ee
Q 015438 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-AS 188 (407)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~ 188 (407)
.+..+..+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++.... ..... +.+....|+||++.|+. .+
T Consensus 184 dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~---g~~~~~~~SPDG~~la~~~~ 259 (427)
T PRK02889 184 DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFK---GSNSAPAWSPDGRTLAVALS 259 (427)
T ss_pred CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCC---CCccceEECCCCCEEEEEEc
Confidence 344455666788899999999999999887643 459999998875432 21122 23568899999998875 56
Q ss_pred CCCeEEEE--ECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC-CCeEEEE--EcCCCeeee
Q 015438 189 MSPIVHIV--DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVY--DLEANKLSL 263 (407)
Q Consensus 189 ~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~--d~~~~~~~~ 263 (407)
.++...|| |+.++....+.. +........|+|||+.|+..+. +|...+| ++.+++. .
T Consensus 260 ~~g~~~Iy~~d~~~~~~~~lt~-----------------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~ 321 (427)
T PRK02889 260 RDGNSQIYTVNADGSGLRRLTQ-----------------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-Q 321 (427)
T ss_pred cCCCceEEEEECCCCCcEECCC-----------------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-E
Confidence 67765555 444443322211 1123456789999998877654 3444444 5555543 2
Q ss_pred eeeccCCCeEEEEecCCCCCEEEEEeCCC---cEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCC-c
Q 015438 264 RILAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-A 339 (407)
Q Consensus 264 ~~~~~~~~v~~i~~s~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg-~ 339 (407)
.+...........|+ ++|++|+..+.++ .|.+||+. .+... .+... .....+.|+|||++|+.++.++ .
T Consensus 322 ~lt~~g~~~~~~~~S-pDG~~Ia~~s~~~g~~~I~v~d~~----~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~ 394 (427)
T PRK02889 322 RVTFTGSYNTSPRIS-PDGKLLAYISRVGGAFKLYVQDLA----TGQVT-ALTDT-TRDESPSFAPNGRYILYATQQGGR 394 (427)
T ss_pred EEecCCCCcCceEEC-CCCCEEEEEEccCCcEEEEEEECC----CCCeE-EccCC-CCccCceECCCCCEEEEEEecCCC
Confidence 232233344568898 7888888776554 69999986 44433 33322 2346789999999998877544 2
Q ss_pred --EEEEEC
Q 015438 340 --IKLWDI 345 (407)
Q Consensus 340 --i~iwd~ 345 (407)
+.+.++
T Consensus 395 ~~l~~~~~ 402 (427)
T PRK02889 395 SVLAAVSS 402 (427)
T ss_pred EEEEEEEC
Confidence 444444
No 222
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=1.6e-13 Score=113.31 Aligned_cols=156 Identities=19% Similarity=0.228 Sum_probs=108.5
Q ss_pred EEEEECCCCCEEEEEeC----------CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEE--eCCCeEEE
Q 015438 128 YVSQFSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA--SMSPIVHI 195 (407)
Q Consensus 128 ~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~~dg~i~v 195 (407)
..+.|+|+|++|++-.. -+...||-++........... ...++|.+++|+|+++.|++. ..+..|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46789999998775433 134556655332111121222 223469999999999987654 45679999
Q ss_pred EECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC---CCeEEEEEcCCCeeeeeeeccCCCe
Q 015438 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDV 272 (407)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v 272 (407)
||++... ...+ ....++.+.|+|+|++|++++. .|.|.+||+++.+.+.... | ..+
T Consensus 88 yd~~~~~-i~~~------------------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~ 146 (194)
T PF08662_consen 88 YDVKGKK-IFSF------------------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDA 146 (194)
T ss_pred EcCcccE-eEee------------------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcE
Confidence 9996222 1111 1225788999999999999864 4679999999888887763 3 357
Q ss_pred EEEEecCCCCCEEEEEeC------CCcEEEEeCcccCCCCceeee
Q 015438 273 NTVCFGDESGHLIYSGSD------DNLCKVWDRRCLNVKGKPAGV 311 (407)
Q Consensus 273 ~~i~~s~~~~~~l~s~~~------d~~i~vwd~~~~~~~~~~~~~ 311 (407)
+.++|+ |+|++|++++. |+.++||+. .|+.+..
T Consensus 147 t~~~Ws-PdGr~~~ta~t~~r~~~dng~~Iw~~-----~G~~l~~ 185 (194)
T PF08662_consen 147 TDVEWS-PDGRYLATATTSPRLRVDNGFKIWSF-----QGRLLYK 185 (194)
T ss_pred EEEEEc-CCCCEEEEEEeccceeccccEEEEEe-----cCeEeEe
Confidence 899998 89999998864 788999998 4665544
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=5.6e-13 Score=124.51 Aligned_cols=200 Identities=16% Similarity=0.174 Sum_probs=130.6
Q ss_pred eEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeC---CCeEEEEECCCCceeccccccccccceeeeecCC
Q 015438 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (407)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (407)
.|.++|.+.... ... ..+...+...+|||||+.|+..+. +..|++|++.+++...+....
T Consensus 180 ~l~~~d~dg~~~-~~l---t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~------------- 242 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVV---HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP------------- 242 (429)
T ss_pred eEEEEcCCCCCC-EEe---ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-------------
Confidence 689999876532 221 123446899999999999987642 457999999887654433211
Q ss_pred CCccccEEEEEEeCCCCEEEEe-eCCC--eEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeC-CCcEEEE--
Q 015438 224 GGYSFGIFSLKFSTDGRELVAG-SSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DNLCKVW-- 297 (407)
Q Consensus 224 ~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~-d~~i~vw-- 297 (407)
..+..+.|+|||+.|+.. +.+| .|++||+.+++.. .+..+...+....|+ ++++.|+..+. ++...+|
T Consensus 243 ----~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wS-PDG~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 243 ----RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWF-PDSQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred ----CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEEC-CCCCEEEEEeCCCCCceEEEE
Confidence 123458999999988765 3344 5999999887654 444455677889998 77887766664 4455555
Q ss_pred eCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCC---CcEEEEECCCCCCcccccCCCccccccceeeeCCCCC
Q 015438 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (407)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 374 (407)
|+. .+. ...+...........|+|||++|+..+.+ ..|.+||+.+++... +.. .+......|+|||
T Consensus 317 d~~----~g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-----~~~~~~p~~SpDG 385 (429)
T PRK03629 317 NIN----GGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-----TFLDETPSIAPNG 385 (429)
T ss_pred ECC----CCC-eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-----CCCCCCceECCCC
Confidence 553 332 33343344455678999999999876643 358889998765322 111 1122345689999
Q ss_pred CccCCC
Q 015438 375 RDLKHP 380 (407)
Q Consensus 375 ~~l~~~ 380 (407)
+.|...
T Consensus 386 ~~i~~~ 391 (429)
T PRK03629 386 TMVIYS 391 (429)
T ss_pred CEEEEE
Confidence 877653
No 224
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.59 E-value=7.1e-15 Score=136.76 Aligned_cols=235 Identities=14% Similarity=0.138 Sum_probs=168.9
Q ss_pred ceeeeeccCCCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEE
Q 015438 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (407)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 185 (407)
..+|.+........+.||.+.|+.++.+.+..++++++.|..|++|.+.++..+. ...+|.+.|++++|+|-.
T Consensus 214 vKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~~---- 286 (1113)
T KOG0644|consen 214 VKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPRA---- 286 (1113)
T ss_pred eeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCccc----
Confidence 3466666666667778999999999999999999999999999999999985544 467888999999999954
Q ss_pred EEeCCCeEEEEECCCCceecccccc-----cccc-------ceeeeecCC--CCccccEEEEEEeCCCC-----------
Q 015438 186 YASMSPIVHIVDVGSGTMESLANVT-----EIHD-------GLDFSAADD--GGYSFGIFSLKFSTDGR----------- 240 (407)
Q Consensus 186 ~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~-------~~~~~~~~~--~~~~~~v~~~~~s~~~~----------- 240 (407)
+.+.||++++||.+-.......... .... +..+..... ....-.+.+++|...+-
T Consensus 287 sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~ 366 (1113)
T KOG0644|consen 287 SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSS 366 (1113)
T ss_pred cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccc
Confidence 7789999999998721111110000 0000 000000000 01111222333333332
Q ss_pred EEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeE
Q 015438 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (407)
Q Consensus 241 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~ 320 (407)
+.+++-.+-.+++|++.++.....+.+|...+..+.++|-+..+..+++.||...|||+- .+.+++.+..-...+.
T Consensus 367 ~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~----eg~pik~y~~gh~kl~ 442 (1113)
T KOG0644|consen 367 IVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW----EGIPIKHYFIGHGKLV 442 (1113)
T ss_pred cceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecc----cCCcceeeecccceee
Confidence 333333455688999999999888999999999999999999999999999999999997 7777776654345677
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEECCCCCCc
Q 015438 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (407)
Q Consensus 321 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (407)
..+|++||..++....-|.+.|......+..
T Consensus 443 d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 443 DGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred ccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 7889999999998888899999887655443
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.1e-12 Score=123.18 Aligned_cols=200 Identities=18% Similarity=0.188 Sum_probs=134.6
Q ss_pred CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeC---CCeEEEEECCCCceeccccccccccceeeeecC
Q 015438 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (407)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (407)
..|.++|.+... ... ...+...+....|+|||+.|+..+. +..|++||+.++....+..
T Consensus 182 ~~l~~~d~dg~~-~~~---lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-------------- 243 (435)
T PRK05137 182 KRLAIMDQDGAN-VRY---LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-------------- 243 (435)
T ss_pred eEEEEECCCCCC-cEE---EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec--------------
Confidence 378889886542 222 2234557999999999999988763 4689999998876543321
Q ss_pred CCCccccEEEEEEeCCCCEEE-EeeCCC--eEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeC-CC--cEEE
Q 015438 223 DGGYSFGIFSLKFSTDGRELV-AGSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKV 296 (407)
Q Consensus 223 ~~~~~~~v~~~~~s~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~-d~--~i~v 296 (407)
+.+.+....|+|||+.|+ +.+.++ .|++||+.+++. ..+..+........|+ ++++.|+..+. ++ .|.+
T Consensus 244 ---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s-pDG~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 244 ---FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS-PDGSQIVFESDRSGSPQLYV 318 (435)
T ss_pred ---CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc-CCCCEEEEEECCCCCCeEEE
Confidence 122466789999998775 444454 488889987765 4455666667789998 77887776653 33 6778
Q ss_pred EeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCC---CcEEEEECCCCCCcccccCCCccccccceeeeCCCC
Q 015438 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 373 (407)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 373 (407)
||+. .+ ....+..+...+....|+|||++|+..+.+ ..|.+||+..... ..+. ..+.+....|+|+
T Consensus 319 ~d~~----g~-~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-----~~~~~~~p~~spD 387 (435)
T PRK05137 319 MNAD----GS-NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-----SGFLVEGPTWAPN 387 (435)
T ss_pred EECC----CC-CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-----CCCCCCCCeECCC
Confidence 8875 33 333444344556778899999999877643 3588888765432 1111 1224567788999
Q ss_pred CCccCC
Q 015438 374 ARDLKH 379 (407)
Q Consensus 374 ~~~l~~ 379 (407)
|+.|..
T Consensus 388 G~~i~~ 393 (435)
T PRK05137 388 GRVIMF 393 (435)
T ss_pred CCEEEE
Confidence 987764
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=5.8e-13 Score=119.42 Aligned_cols=237 Identities=18% Similarity=0.255 Sum_probs=155.4
Q ss_pred cCCCceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCeEEeEeeeccccce-EEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 015438 122 QTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRW-TVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (407)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~dg~i~vwd~~ 199 (407)
+|...-+.|..+|||+|+ |+|...-.|++||+.+-... ...+... .|.-.-++-|-..++.-..|.+|.+-..-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK----FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK----FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee----eeecccccceeEEEeccchhhheEeecCceeeehhhc
Confidence 467788899999999985 46667889999999763111 1111122 23334445555556666666666543221
Q ss_pred CCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecC
Q 015438 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (407)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~ 279 (407)
|... ...++. .-.+|+++.-..-|++++....|+-++++.|..+..+....+.+++|..+
T Consensus 125 -G~hy-~~RIP~-----------------~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in- 184 (703)
T KOG2321|consen 125 -GRHY-RTRIPK-----------------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSIN- 184 (703)
T ss_pred -Ceee-eeecCc-----------------CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeec-
Confidence 1110 011110 23456666533335555556679999999999998888888999999998
Q ss_pred CCCCEEEEEeCCCcEEEEeCcccCCCCceeeeec------cccC-----CeEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 015438 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM------GHLE-----GITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (407)
Q Consensus 280 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~------~~~~-----~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 348 (407)
+...+|++|+.+|.|-+||.|+ ...+..+. .|.+ .|+++.|+.+|-.+++|+.+|.|.|||+++.
T Consensus 185 ~~hgLla~Gt~~g~VEfwDpR~----ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 185 EEHGLLACGTEDGVVEFWDPRD----KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred CccceEEecccCceEEEecchh----hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 6667999999999999999983 33333322 2333 3999999999999999999999999999998
Q ss_pred CCcccccCCCccccccceeeeCCCC--CCccCCCCCcceEEEe
Q 015438 349 SSNASCNLGFRSYEWDYRWMDYPPQ--ARDLKHPCDQSVATYK 389 (407)
Q Consensus 349 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~v~~~~ 389 (407)
+++.... .....++..+.|-+. +.-+.+.+...+++|+
T Consensus 261 ~pl~~kd---h~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd 300 (703)
T KOG2321|consen 261 KPLLVKD---HGYELPIKKLDWQDTDQQNKVVSMDKRILKIWD 300 (703)
T ss_pred Cceeecc---cCCccceeeecccccCCCceEEecchHHhhhcc
Confidence 8876542 233445555555333 3333344445555554
No 227
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=3.4e-13 Score=128.83 Aligned_cols=201 Identities=18% Similarity=0.219 Sum_probs=157.4
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccc-cceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCce
Q 015438 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (407)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~ 203 (407)
+.|....+.-+...++.+..++.+-+||...+....+...... .-....-+.++++.-++++|+--+.|.+|+......
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 3444455666777888888999999999887644433221110 011233345677888999999999999999872221
Q ss_pred eccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeee-eeeccCCCeEEEEecCCCC
Q 015438 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESG 282 (407)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~s~~~~ 282 (407)
.. ...||.+.|.++.|+.||+++++.|.|.++++|++.+.+... ...+|...|..++|. ++
T Consensus 168 p~----------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~-~n- 229 (967)
T KOG0974|consen 168 PI----------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL-PN- 229 (967)
T ss_pred cc----------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEec-cc-
Confidence 11 123688899999999999999999999999999999988765 566899999999998 44
Q ss_pred CEEEEEeCCCcEEEEeCcccCCCCceeeeeccccC-CeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 015438 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (407)
Q Consensus 283 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 349 (407)
.+++++.|.++++|+. .+..+..+.+|.. .|..++..++...++|++.|+.+++||+....
T Consensus 230 -~i~t~gedctcrvW~~-----~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGV-----NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred -eeEEeccceEEEEEec-----ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 8999999999999987 5667778888865 68999999999999999999999999987653
No 228
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.53 E-value=1.4e-12 Score=117.65 Aligned_cols=195 Identities=16% Similarity=0.164 Sum_probs=154.8
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEEC--------------------CCCCeEEEEeCCCe
Q 015438 133 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--------------------PDQRHLVYASMSPI 192 (407)
Q Consensus 133 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s--------------------p~~~~l~~~~~dg~ 192 (407)
.|...++|....||.++||+..+++............+..++..|. .+-..++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3556789999999999999998875444333322333445555552 23346777888999
Q ss_pred EEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCe
Q 015438 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (407)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 272 (407)
|.+|++..++....+. .+.|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.+......+
T Consensus 82 v~~ys~~~g~it~~~s--------------t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~ 147 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLS--------------TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV 147 (541)
T ss_pred EEEEEecCCeEEEEEe--------------cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence 9999999887654432 23477799999999998999999999999999999999999999989999
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCC-----CCEEEEE-eCCCcEEEEECC
Q 015438 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-----GRYLISN-GKDQAIKLWDIR 346 (407)
Q Consensus 273 ~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~s~-~~dg~i~iwd~~ 346 (407)
.+++++ +++.++++++ +.|++||+. +++.+..+.||.++|.+++|.-+ |.+++++ ..+..+.+|-++
T Consensus 148 ~sl~is-~D~~~l~~as--~~ik~~~~~----~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 148 SSLCIS-PDGKILLTAS--RQIKVLDIE----TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ceEEEc-CCCCEEEecc--ceEEEEEcc----CceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 999998 7798998886 589999998 89999999999999999999776 6666554 456678888877
Q ss_pred CC
Q 015438 347 KM 348 (407)
Q Consensus 347 ~~ 348 (407)
..
T Consensus 221 ~~ 222 (541)
T KOG4547|consen 221 KE 222 (541)
T ss_pred cc
Confidence 63
No 229
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.53 E-value=1.2e-11 Score=112.42 Aligned_cols=248 Identities=15% Similarity=0.171 Sum_probs=152.6
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEe-CCCeEEEEECCCCceecc
Q 015438 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESL 206 (407)
Q Consensus 128 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~i~vwd~~~~~~~~~ 206 (407)
..+.|+|||+++++++.||.|.++|+.+.+.+....... ....+++|+||++++++. ..+.+.++|.++.+....
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~----~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~ 115 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG----NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKT 115 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----CcceEEEcCCCCEEEEEecCCCceeEeccccccceee
Confidence 457899999999999999999999999987666654333 367899999999999875 689999999999887665
Q ss_pred ccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC-CCeEEEEEcCCCeeee-eeeccCCCeEEEEecCCCCCE
Q 015438 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHL 284 (407)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~s~~~~~~ 284 (407)
........ .+....+..+..+|....+++.-. .+.|.+.|....+.+. .............|. +++++
T Consensus 116 I~~~~~~~---------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~d-pdgry 185 (369)
T PF02239_consen 116 IPTGGMPV---------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFD-PDGRY 185 (369)
T ss_dssp EE--EE-T---------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE--TTSSE
T ss_pred cccccccc---------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccC-cccce
Confidence 44332211 112336778888898886655544 5889999987665432 222334567788997 77777
Q ss_pred EEEE-eCCCcEEEEeCcccC---------------------------------------------------CCCceeeee
Q 015438 285 IYSG-SDDNLCKVWDRRCLN---------------------------------------------------VKGKPAGVL 312 (407)
Q Consensus 285 l~s~-~~d~~i~vwd~~~~~---------------------------------------------------~~~~~~~~~ 312 (407)
++.+ ...+.|-++|..... ...+.+..+
T Consensus 186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I 265 (369)
T PF02239_consen 186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI 265 (369)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence 6654 445677777765110 012222223
Q ss_pred ccccCCeEEEEecCCCCEEEEE----eCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCC--CCc-ce
Q 015438 313 MGHLEGITFIDSRGDGRYLISN----GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP--CDQ-SV 385 (407)
Q Consensus 313 ~~~~~~i~~~~~s~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~-~v 385 (407)
.....+ ..+..+|+++++.+. ...++|.++|.++.+....+. ......+..+.|+++|+.+..+ .++ .|
T Consensus 266 ~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~---~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i 341 (369)
T PF02239_consen 266 PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT---PGPGKRVVHMEFNPDGKEVWVSVWDGNGAI 341 (369)
T ss_dssp E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH---HHHT--EEEEEE-TTSSEEEEEEE--TTEE
T ss_pred ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe---ccCCCcEeccEECCCCCEEEEEEecCCCEE
Confidence 323333 567779999999988 456899999999986654442 1122237789999999876654 334 89
Q ss_pred EEEeCCcc
Q 015438 386 ATYKGHSV 393 (407)
Q Consensus 386 ~~~~gh~~ 393 (407)
.+|+..+-
T Consensus 342 ~v~D~~Tl 349 (369)
T PF02239_consen 342 VVYDAKTL 349 (369)
T ss_dssp EEEETTTT
T ss_pred EEEECCCc
Confidence 99998874
No 230
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.52 E-value=1.9e-12 Score=107.02 Aligned_cols=214 Identities=19% Similarity=0.165 Sum_probs=147.4
Q ss_pred CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC---CCC-eEEEEeCCCeEEEEECCCCceeccccccccccceeeee
Q 015438 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (407)
Q Consensus 145 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 220 (407)
.|.+.+|++...+..............+..+.|+- ++. .++-+-..|.|.++..........++...... .
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k---i-- 119 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK---I-- 119 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh---h--
Confidence 46788898876533331111122233467777753 344 45556678888888765443322221111000 0
Q ss_pred cCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeee--eeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEe
Q 015438 221 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298 (407)
Q Consensus 221 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd 298 (407)
......++.|++.+..++++..+|.+.+-+....... ..++.|+-++....|+..+.+++++|+.|+.+..||
T Consensus 120 -----~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D 194 (339)
T KOG0280|consen 120 -----SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWD 194 (339)
T ss_pred -----hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEE
Confidence 0012467889999999999999999997666554433 378899999999999988899999999999999999
Q ss_pred CcccCCCCceeee-eccccCCeEEEEecC-CCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCC
Q 015438 299 RRCLNVKGKPAGV-LMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 372 (407)
Q Consensus 299 ~~~~~~~~~~~~~-~~~~~~~i~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 372 (407)
+|. .++.+.. .+-|..+|.++.-+| .+.+|+||+.|..|++||.|++.++.. .....+.+|.+.++.+..
T Consensus 195 ~R~---p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~-~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 195 IRI---PKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF-KAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred ecC---CcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc-cCccccceEEEEecchhh
Confidence 993 3344433 556889999998876 688999999999999999997765432 233557788888777654
No 231
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.3e-11 Score=116.11 Aligned_cols=205 Identities=15% Similarity=0.115 Sum_probs=132.8
Q ss_pred CCCCcccccCCCceEEEEECCCCCEEEEEeCC---CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEE-eC
Q 015438 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SM 189 (407)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~ 189 (407)
+..+..+..+...+...+|+|||+.|+..+.+ ..|.+|++.++.... ..... +.+....|+|||+.|+.. ..
T Consensus 188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~---g~~~~~~~SpDG~~la~~~~~ 263 (430)
T PRK00178 188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFE---GLNGAPAWSPDGSKLAFVLSK 263 (430)
T ss_pred CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCC---CCcCCeEECCCCCEEEEEEcc
Confidence 44456666778889999999999999876543 369999998874322 21122 235568999999988754 44
Q ss_pred CC--eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC-C--CeEEEEEcCCCeeeee
Q 015438 190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D--DCIYVYDLEANKLSLR 264 (407)
Q Consensus 190 dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~ 264 (407)
+| .|++||+.++....+.. +........|+|||+.|+..+. + ..|+++|+.+++...
T Consensus 264 ~g~~~Iy~~d~~~~~~~~lt~-----------------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~- 325 (430)
T PRK00178 264 DGNPEIYVMDLASRQLSRVTN-----------------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER- 325 (430)
T ss_pred CCCceEEEEECCCCCeEEccc-----------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-
Confidence 44 68888998876543321 1113455789999998876654 2 368888988776433
Q ss_pred eeccCCCeEEEEecCCCCCEEEEEeCC-C--cEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCC-C--
Q 015438 265 ILAHTSDVNTVCFGDESGHLIYSGSDD-N--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-Q-- 338 (407)
Q Consensus 265 ~~~~~~~v~~i~~s~~~~~~l~s~~~d-~--~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-g-- 338 (407)
+...........|+ ++++.++..+.+ + .|.+||+. .+.. ..+.. ........|+|||++|+..+.+ +
T Consensus 326 lt~~~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~----tg~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~ 398 (430)
T PRK00178 326 VTFVGNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQ----RGSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRG 398 (430)
T ss_pred eecCCCCccceEEC-CCCCEEEEEEccCCceEEEEEECC----CCCE-EEccC-CCCCCCceECCCCCEEEEEEecCCce
Confidence 32222334467898 677777766543 3 57888886 4433 22321 1222356899999999877643 3
Q ss_pred cEEEEECCC
Q 015438 339 AIKLWDIRK 347 (407)
Q Consensus 339 ~i~iwd~~~ 347 (407)
.|.++++..
T Consensus 399 ~l~~~~~~g 407 (430)
T PRK00178 399 VLMLVSING 407 (430)
T ss_pred EEEEEECCC
Confidence 466667643
No 232
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.51 E-value=6.3e-12 Score=118.04 Aligned_cols=204 Identities=17% Similarity=0.168 Sum_probs=137.8
Q ss_pred cCCCCcccccCCCceEEEEECCCCCEEEEEeCC---CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEE-e
Q 015438 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-S 188 (407)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~ 188 (407)
....+..+..+...+...+|+|+|++|+.+..+ ..|++||+.++..... . .+...+.++.|+||++.|+.. +
T Consensus 178 ~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~---~~~~~~~~~~~spDg~~l~~~~~ 253 (417)
T TIGR02800 178 DGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-A---SFPGMNGAPAFSPDGSKLAVSLS 253 (417)
T ss_pred CCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-e---cCCCCccceEECCCCCEEEEEEC
Confidence 345566677777889999999999999987654 4799999988743221 1 123346678999999987754 4
Q ss_pred CCC--eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC-C--eEEEEEcCCCeeee
Q 015438 189 MSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSL 263 (407)
Q Consensus 189 ~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~~~ 263 (407)
.++ .|++|++.++....+... ........|+|+|+.|+..+.. + .|+++|+.+++. .
T Consensus 254 ~~~~~~i~~~d~~~~~~~~l~~~-----------------~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~ 315 (417)
T TIGR02800 254 KDGNPDIYVMDLDGKQLTRLTNG-----------------PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-R 315 (417)
T ss_pred CCCCccEEEEECCCCCEEECCCC-----------------CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-E
Confidence 443 588999987764433221 1123456899999988776543 2 688899887764 3
Q ss_pred eeeccCCCeEEEEecCCCCCEEEEEeCCC---cEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCC--
Q 015438 264 RILAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-- 338 (407)
Q Consensus 264 ~~~~~~~~v~~i~~s~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg-- 338 (407)
.+..+...+..+.|+ +++++++.++.++ .|.+||+. .+. ...+... .......|+|+|++|+..+.++
T Consensus 316 ~l~~~~~~~~~~~~s-pdg~~i~~~~~~~~~~~i~~~d~~----~~~-~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~ 388 (417)
T TIGR02800 316 RLTFRGGYNASPSWS-PDGDLIAFVHREGGGFNIAVMDLD----GGG-ERVLTDT-GLDESPSFAPNGRMILYATTRGGR 388 (417)
T ss_pred EeecCCCCccCeEEC-CCCCEEEEEEccCCceEEEEEeCC----CCC-eEEccCC-CCCCCceECCCCCEEEEEEeCCCc
Confidence 444455667788998 7788888877765 78889986 332 2333222 2334568999999988877654
Q ss_pred -cEEEEEC
Q 015438 339 -AIKLWDI 345 (407)
Q Consensus 339 -~i~iwd~ 345 (407)
.+.+.+.
T Consensus 389 ~~l~~~~~ 396 (417)
T TIGR02800 389 GVLGLVST 396 (417)
T ss_pred EEEEEEEC
Confidence 3444443
No 233
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.7e-11 Score=115.10 Aligned_cols=235 Identities=14% Similarity=0.099 Sum_probs=140.3
Q ss_pred hhhccCccCccCCCceecccccc----ceee-eeccCCCCcccccCCCceEEEEECCCCCEEEEEeCC---CeEEEEEcC
Q 015438 83 VKMLAGREGNYSGRGRFSAADCC----HMLS-RYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVE 154 (407)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~ 154 (407)
+..+.|...-+.....|...... ..++ ....+.....+..+...+....|+|||+.|+..+.+ ..|.+||+.
T Consensus 171 ~~~ltG~~g~f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~ 250 (448)
T PRK04792 171 YEKLTGERGAFLTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIY 250 (448)
T ss_pred HHHhcCCCccccCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECC
Confidence 44555655555555555322111 1111 122334445566677888999999999999876542 358899998
Q ss_pred CCeEEeEeeeccccceEEEEEEECCCCCeEEE-EeCCC--eEEEEECCCCceeccccccccccceeeeecCCCCccccEE
Q 015438 155 RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF 231 (407)
Q Consensus 155 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 231 (407)
++.... ...... ......|+||++.|+. .+.++ .|+++|+.+++...+.. +.....
T Consensus 251 tg~~~~-lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~-----------------~~~~~~ 309 (448)
T PRK04792 251 TQVREK-VTSFPG---INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR-----------------HRAIDT 309 (448)
T ss_pred CCCeEE-ecCCCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc-----------------CCCCcc
Confidence 774322 222222 2446899999998876 45556 48888888776543321 111345
Q ss_pred EEEEeCCCCEEEEeeC-C--CeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeC-CC--cEEEEeCcccCCC
Q 015438 232 SLKFSTDGRELVAGSS-D--DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKVWDRRCLNVK 305 (407)
Q Consensus 232 ~~~~s~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~-d~--~i~vwd~~~~~~~ 305 (407)
..+|+|||+.|+..+. + ..|+++|+.+++... +..........+|+ +++++|+..+. ++ .|.++|+. .
T Consensus 310 ~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~S-pDG~~l~~~~~~~g~~~I~~~dl~----~ 383 (448)
T PRK04792 310 EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSIT-PDGRSMIMVNRTNGKFNIARQDLE----T 383 (448)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeEC-CCCCEEEEEEecCCceEEEEEECC----C
Confidence 6899999998877654 2 358888888776433 32222334457898 67777766554 44 45556765 3
Q ss_pred CceeeeeccccCCeEEEEecCCCCEEEEEeC-CCc--EEEEECC
Q 015438 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQA--IKLWDIR 346 (407)
Q Consensus 306 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-dg~--i~iwd~~ 346 (407)
+.. ..+... .......|+|||++|+..+. ++. +.+++.+
T Consensus 384 g~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 384 GAM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CCe-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 333 233222 12234579999998877664 333 6666763
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.3e-12 Score=122.22 Aligned_cols=203 Identities=20% Similarity=0.183 Sum_probs=128.1
Q ss_pred CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCC---CeEEEEECCCCceeccccccccccceeeeecC
Q 015438 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (407)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (407)
..|.++|.+.. ..... ..+...+.+.+|+||++.|+..+.+ ..|.+||+.+++...+...
T Consensus 176 ~~L~~~D~dG~-~~~~l---~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~------------- 238 (427)
T PRK02889 176 YQLQISDADGQ-NAQSA---LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF------------- 238 (427)
T ss_pred cEEEEECCCCC-CceEe---ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-------------
Confidence 45777776543 22221 2334468899999999999887643 4699999998865433211
Q ss_pred CCCccccEEEEEEeCCCCEEEE-eeCCCeEE--EEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeC-CCcEEEEe
Q 015438 223 DGGYSFGIFSLKFSTDGRELVA-GSSDDCIY--VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DNLCKVWD 298 (407)
Q Consensus 223 ~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~--i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~-d~~i~vwd 298 (407)
.+.+....|+|||+.|+. .+.+|... ++|+.++. ...+..+........|+ ++|+.|+..+. ++...+|.
T Consensus 239 ----~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS-pDG~~l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 239 ----KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS-PDGRSIYFTSDRGGAPQIYR 312 (427)
T ss_pred ----CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc-CCCCEEEEEecCCCCcEEEE
Confidence 113557899999998764 56676644 45555444 45555556566778998 77877765553 56667776
Q ss_pred CcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCC---cEEEEECCCCCCcccccCCCccccccceeeeCCCCCC
Q 015438 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 375 (407)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 375 (407)
+... .+. ...+..........+|+|||++|+..+.++ .|.+||+.+++..... .. . ......|+|+++
T Consensus 313 ~~~~--~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt---~~--~-~~~~p~~spdg~ 383 (427)
T PRK02889 313 MPAS--GGA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT---DT--T-RDESPSFAPNGR 383 (427)
T ss_pred EECC--CCc-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc---CC--C-CccCceECCCCC
Confidence 5411 222 222222223345678999999998777554 5999999876543211 11 1 124567899998
Q ss_pred ccCCC
Q 015438 376 DLKHP 380 (407)
Q Consensus 376 ~l~~~ 380 (407)
.|...
T Consensus 384 ~l~~~ 388 (427)
T PRK02889 384 YILYA 388 (427)
T ss_pred EEEEE
Confidence 87654
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.6e-12 Score=119.60 Aligned_cols=212 Identities=20% Similarity=0.155 Sum_probs=135.2
Q ss_pred CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCC---CeEEEEECCCCceeccccccccccceeeeecC
Q 015438 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (407)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (407)
..|.+||.+... ...+ ..+...+.+..|+||++.|+..+.. ..|++||+.+++...+....
T Consensus 184 ~~l~i~D~~g~~-~~~l---t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~------------ 247 (433)
T PRK04922 184 YALQVADSDGYN-PQTI---LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR------------ 247 (433)
T ss_pred EEEEEECCCCCC-ceEe---ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC------------
Confidence 368999986542 2222 2344468899999999999987643 47999999887654332211
Q ss_pred CCCccccEEEEEEeCCCCEEEE-eeCCC--eEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeC-CCc--EEE
Q 015438 223 DGGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DNL--CKV 296 (407)
Q Consensus 223 ~~~~~~~v~~~~~s~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~-d~~--i~v 296 (407)
+...++.|+|+|+.|+. .+.+| .|++||+.+++. ..+..+......++|+ ++++.|+.++. ++. |.+
T Consensus 248 -----g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s-pDG~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 248 -----GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA-PDGKSIYFTSDRGGRPQIYR 320 (433)
T ss_pred -----CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEE
Confidence 12346899999997754 44454 699999988765 4455555556788998 67887776653 454 666
Q ss_pred EeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCC---cEEEEECCCCCCcccccCCCccccccceeeeCCCC
Q 015438 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 373 (407)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 373 (407)
+|+. .++. ..+..+......++|+|||++|+..+.++ .|.+||+.+++... +. .. .+ .....|+|+
T Consensus 321 ~dl~----~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt--~~--~~-~~~p~~spd 389 (433)
T PRK04922 321 VAAS----GGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT--PG--SL-DESPSFAPN 389 (433)
T ss_pred EECC----CCCe-EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC--CC--CC-CCCceECCC
Confidence 6664 3332 22322333445789999999998765433 59999998765432 11 11 11 234578999
Q ss_pred CCccCCCC----CcceEEEeCC
Q 015438 374 ARDLKHPC----DQSVATYKGH 391 (407)
Q Consensus 374 ~~~l~~~~----~~~v~~~~gh 391 (407)
++.+.... ...+..++.+
T Consensus 390 G~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 390 GSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CCEEEEEEecCCceEEEEEECC
Confidence 98765432 2345555443
No 236
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=3.9e-12 Score=109.16 Aligned_cols=246 Identities=13% Similarity=0.136 Sum_probs=172.4
Q ss_pred CCceEEEEECCCCC--EEEEEeCCCeEEEEEcCCCeEEeEe---eeccccceEEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 015438 124 TSRAYVSQFSADGS--LFVAGFQASQIRIYDVERGWKIQKD---ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (407)
Q Consensus 124 ~~~v~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~ 198 (407)
...|..++|..+++ .+...+.+..+..+........... ........+|..++. -...|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~--~dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL--ADGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh--cCCEEEEEecCCcEEEEec
Confidence 45677778876654 3444446666776666554222211 112223345655554 2446888889999999999
Q ss_pred CCCceec--cccccccccceeeeecCCCCccccEEEEEEeCCCC-EEEEeeCC--CeEEEEEcCCCeeeeeeecc-----
Q 015438 199 GSGTMES--LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSD--DCIYVYDLEANKLSLRILAH----- 268 (407)
Q Consensus 199 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d--g~i~i~d~~~~~~~~~~~~~----- 268 (407)
+.+.... ...+.. ..++..|.-++... ++++|+.. ..+.+||+++.+.+..-+.-
T Consensus 133 k~~d~hss~l~~la~---------------g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLAT---------------GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred cCCccccccceeeec---------------CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 8654221 111111 12466666666554 55668888 78999999988654332211
Q ss_pred ----CCCeEEEEecCCC-CCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 015438 269 ----TSDVNTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (407)
Q Consensus 269 ----~~~v~~i~~s~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw 343 (407)
.-.++++.|-+.+ ...|++++.-+.+++||.+ ...+|+..+.--..+|+++...|+|+++++|..-|.+..|
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~---~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~F 274 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR---HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKF 274 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCc---ccCcceeEeccccCcceeeeecCCCcEEEEecccchhhee
Confidence 1235678887332 5689999999999999998 3567888888778899999999999999999999999999
Q ss_pred ECCCCCCcccccCCCccccccceeeeCCCCCCccCC-CCCcceEEEeCCc
Q 015438 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH-PCDQSVATYKGHS 392 (407)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~v~~~~gh~ 392 (407)
|++.++.+... .+.....++.+...|+.+++++ +-|+.+++|+..+
T Consensus 275 D~r~~kl~g~~---~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 275 DLRGGKLLGCG---LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cccCceeeccc---cCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 99999887765 5566677888888999888864 5699999999876
No 237
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=4.2e-11 Score=111.55 Aligned_cols=214 Identities=16% Similarity=0.130 Sum_probs=129.8
Q ss_pred CCCCcccccCCCceEEEEECCCCCEEE---EEeCC--CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEe
Q 015438 114 VNGPWPVDQTTSRAYVSQFSADGSLFV---AGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188 (407)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~~~~~l~---~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 188 (407)
+..+..+......+..-+|||||+.++ +...+ ..|.+.++.++.... +....+ ......|||||+.|+..+
T Consensus 174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g---~~~~p~wSPDG~~Laf~s 249 (428)
T PRK01029 174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQG---NQLMPTFSPRKKLLAFIS 249 (428)
T ss_pred CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCC---CccceEECCCCCEEEEEE
Confidence 344555655666778889999997532 33333 358888988774322 222222 345689999999988765
Q ss_pred C-CC----eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEee-CCCe--EEEEEcCC-C
Q 015438 189 M-SP----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDC--IYVYDLEA-N 259 (407)
Q Consensus 189 ~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~--i~i~d~~~-~ 259 (407)
. +| .+.+|++..+.......+.. +........+|+|||+.|+..+ .+|. |+++++.. +
T Consensus 250 ~~~g~~di~~~~~~~~~g~~g~~~~lt~-------------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 250 DRYGNPDLFIQSFSLETGAIGKPRRLLN-------------EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred CCCCCcceeEEEeecccCCCCcceEeec-------------CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 3 22 34446665432111111110 0111235679999999887765 4554 55555542 2
Q ss_pred eeeeeeeccCCCeEEEEecCCCCCEEEEEeCC---CcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeC
Q 015438 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK 336 (407)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 336 (407)
.....+..+...+....|+ ++|+.|+..+.+ ..|.+||+. .++. ..+......+....|+|||++|+..+.
T Consensus 317 ~~~~~lt~~~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~----~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLA----TGRD-YQLTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred cceEEeccCCCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECC----CCCe-EEccCCCCCccceEECCCCCEEEEEEC
Confidence 3334455555677889998 778877765543 368999986 4444 334333345678899999998875443
Q ss_pred ---CCcEEEEECCCCCC
Q 015438 337 ---DQAIKLWDIRKMSS 350 (407)
Q Consensus 337 ---dg~i~iwd~~~~~~ 350 (407)
...|.+||+..++.
T Consensus 391 ~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 391 NSNESELYLISLITKKT 407 (428)
T ss_pred CCCCceEEEEECCCCCE
Confidence 35688888877554
No 238
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=8.3e-13 Score=132.27 Aligned_cols=226 Identities=11% Similarity=0.156 Sum_probs=163.1
Q ss_pred cccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 015438 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (407)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~ 199 (407)
+..+-..|.++.=+|...+.++|+.||.|++|....+..+....... ...|+.+.|+.+|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g--~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG--NSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC--cchhhhhhhcccCCceeeeccCCceeecccC
Confidence 34456778888889999999999999999999988876666544332 2679999999999999999999999999987
Q ss_pred CCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEee---CCCeEEEEEcCCC---eeeeeeeccCCCeE
Q 015438 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLEAN---KLSLRILAHTSDVN 273 (407)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~---~~~~~~~~~~~~v~ 273 (407)
...... . ..|.....++.|-. ..+++++ .++.+.+||.--. ..+. ..|.+.++
T Consensus 2282 pk~~~s----~-------------qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT 2340 (2439)
T KOG1064|consen 2282 PKPYTS----W-------------QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGAT 2340 (2439)
T ss_pred Ccceec----c-------------ccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCce
Confidence 221111 1 12444566677764 4566653 5688999997432 2333 68999999
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCccc
Q 015438 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (407)
Q Consensus 274 ~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (407)
++++. |..++|++|+.+|.|++||++ ..+..+.+.. ++ ...+|++|+..|.++||++.....+..
T Consensus 2341 ~l~~~-P~~qllisggr~G~v~l~D~r----qrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2341 VLAYA-PKHQLLISGGRKGEVCLFDIR----QRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred EEEEc-CcceEEEecCCcCcEEEeehH----HHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhc
Confidence 99998 778899999999999999998 6666655543 44 567899999999999999999866665
Q ss_pred ccCCCccccc-cc--eeeeCCCCCCccCCCCCc
Q 015438 354 CNLGFRSYEW-DY--RWMDYPPQARDLKHPCDQ 383 (407)
Q Consensus 354 ~~~~~~~~~~-~v--~~~~~~~~~~~l~~~~~~ 383 (407)
+...+..... .. ..+...+.+|++.++.|+
T Consensus 2406 ~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2406 FPSEHAKQGFFRNIGMQINVGQCNRIFSCGADG 2438 (2439)
T ss_pred CchhhcccchhhhcCceeeeccCceEEEecCCC
Confidence 5332211111 00 223344556666666554
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.45 E-value=7.5e-12 Score=105.74 Aligned_cols=266 Identities=13% Similarity=0.167 Sum_probs=167.0
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeE--EeEeeecccc------------ceEEEEEEECCCC--CeEEEE
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--IQKDILAKSL------------RWTVTDTSLSPDQ--RHLVYA 187 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~------------~~~v~~~~~sp~~--~~l~~~ 187 (407)
..-|.++.|...|.+||+|..+|.|.++.-+.... .........| ...|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45688999999999999999999999997654321 0011111111 2358889998864 457777
Q ss_pred eCCCeEEEEECCCCceec-ccc--------------c--ccccc-ce--eeeecCCCCccccEEEEEEeCCCCEEEEeeC
Q 015438 188 SMSPIVHIVDVGSGTMES-LAN--------------V--TEIHD-GL--DFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (407)
Q Consensus 188 ~~dg~i~vwd~~~~~~~~-~~~--------------~--~~~~~-~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 247 (407)
+.|.+|++|.+....... -.. + ...++ .. ........+|..-|+++.++.|+..++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 899999999987543221 000 0 00000 00 01111225688889999999999988877 4
Q ss_pred CCeEEEEEcCCCee---eeeeecc-----CCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCC---CCc---------
Q 015438 248 DDCIYVYDLEANKL---SLRILAH-----TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV---KGK--------- 307 (407)
Q Consensus 248 dg~i~i~d~~~~~~---~~~~~~~-----~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~---~~~--------- 307 (407)
|=.|.+|+++-... +.-++.+ ..-|++..|+|..-++|+-++..|+|++.|+|.... ..+
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 67899999874332 1222222 234788999988899999999999999999982210 001
Q ss_pred eeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCC------------CccccccceeeeCCCCCC
Q 015438 308 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG------------FRSYEWDYRWMDYPPQAR 375 (407)
Q Consensus 308 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~ 375 (407)
...-+.+--..|..+.|+++|+|+++-. --+|++||++..........- ......+---..++.++.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 1111122234688899999999999765 378999999765544332110 112222333445566554
Q ss_pred -ccCCCCCcceEEEeCC
Q 015438 376 -DLKHPCDQSVATYKGH 391 (407)
Q Consensus 376 -~l~~~~~~~v~~~~gh 391 (407)
.++.+..+..++|.+.
T Consensus 343 ~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLA 359 (433)
T ss_pred eEecccccceEEEecCC
Confidence 4444556777777743
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.45 E-value=7e-11 Score=107.36 Aligned_cols=195 Identities=17% Similarity=0.140 Sum_probs=129.0
Q ss_pred CEE-EEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccc
Q 015438 137 SLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (407)
Q Consensus 137 ~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 215 (407)
+++ ++-..++.|.|.|..+.+.+........ .-..+.|+||++++++++.||.|.++|+.+.+.........
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~---~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---- 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGA---PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---- 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STT---EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCC---ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----
Confidence 444 4455689999999998766665443322 23447799999999999999999999999998765554322
Q ss_pred eeeeecCCCCccccEEEEEEeCCCCEEEEee-CCCeEEEEEcCCCeeeeeeecc-------CCCeEEEEecCCCCCEEEE
Q 015438 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAH-------TSDVNTVCFGDESGHLIYS 287 (407)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~i~~s~~~~~~l~s 287 (407)
....+++++||++++++. ..+.+.++|.++.+++..+... ...+..|..+|....++++
T Consensus 79 -------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 79 -------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp -------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred -------------CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence 467799999999988775 5899999999999998887643 3457788887444434444
Q ss_pred EeCCCcEEEEeCcccCCCCceee-eeccccCCeEEEEecCCCCEEEEE-eCCCcEEEEECCCCCCccccc
Q 015438 288 GSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCN 355 (407)
Q Consensus 288 ~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~ 355 (407)
.-..+.|-+.|.. ..+.+. .............|+|+++|++++ ..++.|-++|..+++....+.
T Consensus 146 lkd~~~I~vVdy~----d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 146 LKDTGEIWVVDYS----DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp ETTTTEEEEEETT----TSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred EccCCeEEEEEec----cccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 4455888888876 323222 222234456788999999987765 457789999999887665443
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=5.3e-12 Score=113.36 Aligned_cols=213 Identities=14% Similarity=0.176 Sum_probs=155.1
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceecccc
Q 015438 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (407)
Q Consensus 129 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 208 (407)
.++++.-..-|..++....|+-++++.|.-+..... ..+.++++..++-..+|++|+.+|.|..||.+.......+.
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~---~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET---DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEcccccccccccc---ccccceeeeecCccceEEecccCceEEEecchhhhhheeee
Confidence 344443222344444556799999999865544332 23469999999999999999999999999998876655444
Q ss_pred ccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeee-eccCCCeEEEEecCCCCCEEEE
Q 015438 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYS 287 (407)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~s~~~~~~l~s 287 (407)
.....+ .++.......|+++.|+.+|-.+++|+.+|.|+|||+++.+++..- ....-+|..+.|.+.+++--+.
T Consensus 215 ~~~~v~-----s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~ 289 (703)
T KOG2321|consen 215 AASSVN-----SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVV 289 (703)
T ss_pred cccccC-----CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEE
Confidence 332211 1112223346999999999999999999999999999999876543 2334678899997554443444
Q ss_pred EeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccc
Q 015438 288 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 288 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (407)
......++|||-. ++++...+.. ...+..+|+-|++-+++++-++..+..|=+...-+.+..
T Consensus 290 S~Dk~~~kiWd~~----~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrW 351 (703)
T KOG2321|consen 290 SMDKRILKIWDEC----TGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPRW 351 (703)
T ss_pred ecchHHhhhcccc----cCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccccCCCchh
Confidence 4556799999997 8888877764 445999999999999999999999998888876665543
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.44 E-value=3.5e-10 Score=102.83 Aligned_cols=262 Identities=17% Similarity=0.192 Sum_probs=158.6
Q ss_pred CceEEEEECCCCCEEEEEeC----CCeEEEEEcCCC-eEEeEeeeccccceEEEEEEECCCCCeEEEEe-CCCeEEEEEC
Q 015438 125 SRAYVSQFSADGSLFVAGFQ----ASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDV 198 (407)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~i~vwd~ 198 (407)
.....++++|++++|.++.. ++.|..|.+... ..+...............++++|++++|+++. .+|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 44567889999999998876 468999988763 23333222221223456789999999999987 4889999999
Q ss_pred CCC-ceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEee-CCCeEEEEEcCCCe--ee--eeee-ccCCC
Q 015438 199 GSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANK--LS--LRIL-AHTSD 271 (407)
Q Consensus 199 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~--~~--~~~~-~~~~~ 271 (407)
... .......... +.+. .............++.|+|+++++++.. ....|++|++.... .. ..+. .....
T Consensus 117 ~~~g~l~~~~~~~~-~~g~--g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 117 DDDGSLGEVVQTVR-HEGS--GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp CTTSEEEEEEEEEE-SEEE--ESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred cCCcccceeeeecc-cCCC--CCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 874 3322211110 0000 1111111223578899999999887754 34579999997654 21 2222 33455
Q ss_pred eEEEEecCCCCCEEEEEe-CCCcEEEEeCcccCCCCceeeeeccc------cCCeEEEEecCCCCEEEEEe-CCCcEEEE
Q 015438 272 VNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSRGDGRYLISNG-KDQAIKLW 343 (407)
Q Consensus 272 v~~i~~s~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~s~~-~dg~i~iw 343 (407)
...+.|+ +++++++... .++.|.++++.......+.+...... ......|.++|||++|.++. ..++|.+|
T Consensus 194 PRh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 194 PRHLAFS-PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVF 272 (345)
T ss_dssp EEEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred CcEEEEc-CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence 7889998 6777665554 57889999986221122222222211 12578899999999988766 57789999
Q ss_pred ECCCC-CCcccccCCCccccccceeeeCCCCCCccCCC--CCcceEEEeCC
Q 015438 344 DIRKM-SSNASCNLGFRSYEWDYRWMDYPPQARDLKHP--CDQSVATYKGH 391 (407)
Q Consensus 344 d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~v~~~~gh 391 (407)
+++.. ..+... ..........+.+.++|++++|.++ .++.|.+|+-+
T Consensus 273 ~~d~~~g~l~~~-~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 273 DLDPATGTLTLV-QTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EECTTTTTEEEE-EEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEecCCCceEEE-EEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 99533 222211 1112222235789999999988765 46788888653
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.43 E-value=2.7e-11 Score=113.77 Aligned_cols=200 Identities=21% Similarity=0.198 Sum_probs=130.4
Q ss_pred CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCC---CeEEEEECCCCceeccccccccccceeeeecC
Q 015438 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (407)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (407)
..|.++|.+... ..... .+...+....|+||+++|+.+... ..|++||+.++....+..
T Consensus 170 ~~l~~~d~~g~~-~~~l~---~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-------------- 231 (417)
T TIGR02800 170 YELQVADYDGAN-PQTIT---RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-------------- 231 (417)
T ss_pred ceEEEEcCCCCC-CEEee---cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--------------
Confidence 358888876432 22222 233458889999999999987644 479999998875433221
Q ss_pred CCCccccEEEEEEeCCCCEEEEe-eCCC--eEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeC-CC--cEEE
Q 015438 223 DGGYSFGIFSLKFSTDGRELVAG-SSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKV 296 (407)
Q Consensus 223 ~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~-d~--~i~v 296 (407)
+...+.+++|+|+|+.|+.. +.++ .|++||+.+++. ..+..+........|+ ++++.|+..+. ++ .|.+
T Consensus 232 ---~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 232 ---FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWS-PDGKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred ---CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEEC-CCCCEEEEEECCCCCceEEE
Confidence 11245568999999877653 4343 599999987754 3444455555678998 67877766554 33 5777
Q ss_pred EeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCC---cEEEEECCCCCCcccccCCCccccccceeeeCCCC
Q 015438 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 373 (407)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 373 (407)
+|+. .++ ...+..+...+..+.|+|+|++|+.++.++ .|.+||+.+....... . ........|+|+
T Consensus 307 ~d~~----~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~-~-----~~~~~~p~~spd 375 (417)
T TIGR02800 307 MDAD----GGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT-D-----TGLDESPSFAPN 375 (417)
T ss_pred EECC----CCC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc-C-----CCCCCCceECCC
Confidence 7775 333 334444555677889999999999888776 7899998874332111 1 111234568999
Q ss_pred CCccCC
Q 015438 374 ARDLKH 379 (407)
Q Consensus 374 ~~~l~~ 379 (407)
++.|..
T Consensus 376 g~~l~~ 381 (417)
T TIGR02800 376 GRMILY 381 (417)
T ss_pred CCEEEE
Confidence 876654
No 244
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=3.9e-12 Score=112.04 Aligned_cols=274 Identities=12% Similarity=0.185 Sum_probs=193.4
Q ss_pred ccccceeeeeccCCCCccc-ccCCCceEEEEECCC--CCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEEC
Q 015438 102 ADCCHMLSRYLPVNGPWPV-DQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (407)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (407)
.+...++|.+........+ .+|...|.-..|-|. .+.+++++.||.|++=.+.....+........|.++|..++.-
T Consensus 162 DD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~ 241 (559)
T KOG1334|consen 162 DDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVE 241 (559)
T ss_pred ccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeec
Confidence 4455667776665554444 689999999999884 4579999999999998876544455455667788899999999
Q ss_pred CCC-CeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCC-EEEEeeCCCeEEEEEc
Q 015438 179 PDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDL 256 (407)
Q Consensus 179 p~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~ 256 (407)
|+. ..|.+++.|+.+.-+|++.+.....+........ ..-....++.+|... .+++|+.|-.+++||.
T Consensus 242 p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~----------~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~ 311 (559)
T KOG1334|consen 242 PDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK----------ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQ 311 (559)
T ss_pred CCCCCcccccccccceeeeeeccCCccceeeeeccCCc----------cceeeeeEecCCCCccccccCChhhhhhhhcc
Confidence 964 5688899999999999988766544432221111 112567889999654 8999999999999998
Q ss_pred CCCee------eeeee------ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCC----------ceee-eec
Q 015438 257 EANKL------SLRIL------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG----------KPAG-VLM 313 (407)
Q Consensus 257 ~~~~~------~~~~~------~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~----------~~~~-~~~ 313 (407)
+.-.. +.++. ...-.|++++|+ .++.-|+++-.|-.|+++.-... .+ ..+. .++
T Consensus 312 R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-h~~sElLaSYnDe~IYLF~~~~~--~G~~p~~~s~~~~~~k~vYK 388 (559)
T KOG1334|consen 312 RRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-HDGSELLASYNDEDIYLFNKSMG--DGSEPDPSSPREQYVKRVYK 388 (559)
T ss_pred cchhhccccchhhhcCCccccccCcccceeEEec-CCccceeeeecccceEEeccccc--cCCCCCCCcchhhccchhhc
Confidence 75321 22222 223468999998 55555666677888999954311 11 2222 377
Q ss_pred cccC--CeEEEE-ecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCC-CCcceEEEe
Q 015438 314 GHLE--GITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYK 389 (407)
Q Consensus 314 ~~~~--~i~~~~-~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~v~~~~ 389 (407)
||.. .|..+- |-|...|+++|+.-|.|.||+-.+.+.+.-+.. .. ..|.|+.-+|..-+|+++ =|.-|++|.
T Consensus 389 GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg---Dr-~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 389 GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG---DR-HVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred ccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc---cc-ceEeccCCCCCCchhhccCCccceeeec
Confidence 8865 366665 578899999999999999999888776654422 22 267888888888888765 488899997
Q ss_pred CCc
Q 015438 390 GHS 392 (407)
Q Consensus 390 gh~ 392 (407)
--+
T Consensus 465 P~~ 467 (559)
T KOG1334|consen 465 PLT 467 (559)
T ss_pred CCc
Confidence 643
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1e-10 Score=105.05 Aligned_cols=133 Identities=20% Similarity=0.359 Sum_probs=97.0
Q ss_pred cccEEEEEEeCCCCEEEE--eeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCC---CcEEEEeCcc
Q 015438 227 SFGIFSLKFSTDGRELVA--GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRC 301 (407)
Q Consensus 227 ~~~v~~~~~s~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d---~~i~vwd~~~ 301 (407)
.++|.++.|+|+++.+++ |-.--.+.|||++ +.++..+ ..++-+++-|+ +.|++++.++.+ |.+-|||+.
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fn-p~g~ii~lAGFGNL~G~mEvwDv~- 344 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFN-PHGNIILLAGFGNLPGDMEVWDVP- 344 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEEC-CCCCEEEEeecCCCCCceEEEecc-
Confidence 568889999999986655 4456689999987 5565554 56788899998 889999888865 799999998
Q ss_pred cCCCCceeeeeccccCCeEEEEecCCCCEEEEEeC------CCcEEEEECCCCCCcccccCCCccccccceeeeCCC
Q 015438 302 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 372 (407)
Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 372 (407)
..+++..+... .-+-+.|+|||++|+|++. |+.++||+..-....... .....|.+.|-.|..
T Consensus 345 ---n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~---f~sEL~qv~W~P~~~ 413 (566)
T KOG2315|consen 345 ---NRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKM---FKSELLQVEWRPFND 413 (566)
T ss_pred ---chhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhh---hhHhHhheeeeecCC
Confidence 67777777543 3466789999999999874 889999998754332221 222345566655544
No 246
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.41 E-value=2e-12 Score=108.59 Aligned_cols=206 Identities=15% Similarity=0.152 Sum_probs=136.9
Q ss_pred EEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEE-eeCCCeEEE
Q 015438 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYV 253 (407)
Q Consensus 175 ~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i 253 (407)
++|||+|+++|+++.- .+.|-|.++-+...++.... .|.-+.|..+..++++ ...++.|.+
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cld-----------------ki~yieW~ads~~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLD-----------------KIVYIEWKADSCHILCVAYKDPKVQV 75 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHH-----------------HhhheeeeccceeeeeeeeccceEEE
Confidence 6899999999998875 78899988877665554322 5777899988876555 467889999
Q ss_pred EEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEE
Q 015438 254 YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLIS 333 (407)
Q Consensus 254 ~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 333 (407)
|++...+-..++.....++.+++|||...++|.+...|-.|.+|.+. +.+.. -+.-....+..++|+|||++.+.
T Consensus 76 wsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~----t~~~~-~~~~pK~~~kg~~f~~dg~f~ai 150 (447)
T KOG4497|consen 76 WSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLN----TQKGY-LLPHPKTNVKGYAFHPDGQFCAI 150 (447)
T ss_pred EEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEec----cceeE-EecccccCceeEEECCCCceeee
Confidence 99999998889988899999999995444788888899999999996 33332 23323456789999999999988
Q ss_pred EeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCC---cceEEEeCCccceeeEEEeeCCCCC
Q 015438 334 NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD---QSVATYKGHSVLRTLIRCHFSPVYR 407 (407)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~~v~~~~gh~~~~~~~~~~fsp~~~ 407 (407)
++.-...-..++-..+. -.+.........+.+.+.++|||..|++-+. -.|..|.- .-.+..+.|||+.|
T Consensus 151 ~sRrDCkdyv~i~~c~~-W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~---~lG~k~v~wsP~~q 223 (447)
T KOG4497|consen 151 LSRRDCKDYVQISSCKA-WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER---GLGLKFVEWSPCNQ 223 (447)
T ss_pred eecccHHHHHHHHhhHH-HHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeee---ccceeEEEeccccc
Confidence 87532211111111000 0011112333345556667777766665332 22223321 12466677887654
No 247
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.38 E-value=6.1e-11 Score=99.78 Aligned_cols=240 Identities=12% Similarity=0.138 Sum_probs=159.2
Q ss_pred CCceEEEEECCCCCEEEE-EeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEE-EEeCCCeEEEEECCCC
Q 015438 124 TSRAYVSQFSADGSLFVA-GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSG 201 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~dg~i~vwd~~~~ 201 (407)
-..|.-+.|..|..+++. ...++.|.+|++...+-..++ ......+.++.|||||+.|+ ++..+-.|.||.+.+.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI---deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI---DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe---ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc
Confidence 356778899998877665 466889999999876433332 23344699999999996555 5667889999999887
Q ss_pred ceeccccccccccceeeeecCC----------------------------------------------------------
Q 015438 202 TMESLANVTEIHDGLDFSAADD---------------------------------------------------------- 223 (407)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 223 (407)
+...+.......++..|.....
T Consensus 125 ~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv 204 (447)
T KOG4497|consen 125 KGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV 204 (447)
T ss_pred eeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee
Confidence 6544333333223322222111
Q ss_pred --CCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeee------------------------------------
Q 015438 224 --GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI------------------------------------ 265 (407)
Q Consensus 224 --~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------------------------------ 265 (407)
..-.-++..++|+|.+++|++|+.|+.+++.+--+.+....+
T Consensus 205 ~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~ 284 (447)
T KOG4497|consen 205 YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDL 284 (447)
T ss_pred eeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcc
Confidence 011246788999999999999999998888764333221100
Q ss_pred ------------------------e------ccCCCeEEEEecCCCCCEEEEEeCC--CcEEEEeCcccCCCCceeeeec
Q 015438 266 ------------------------L------AHTSDVNTVCFGDESGHLIYSGSDD--NLCKVWDRRCLNVKGKPAGVLM 313 (407)
Q Consensus 266 ------------------------~------~~~~~v~~i~~s~~~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~ 313 (407)
+ .....+.-++|+ .+..++++-... +.+-+||++ ..+.. ..-
T Consensus 285 ~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs-~Ds~y~aTrnd~~PnalW~Wdlq----~l~l~-avL 358 (447)
T KOG4497|consen 285 EAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS-CDSTYAATRNDKYPNALWLWDLQ----NLKLH-AVL 358 (447)
T ss_pred ccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec-CCceEEeeecCCCCceEEEEech----hhhhh-hhh
Confidence 0 012235568898 778788776543 679999997 43333 333
Q ss_pred cccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCcc
Q 015438 314 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 377 (407)
Q Consensus 314 ~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 377 (407)
....+|....|+|....|+.+.....+.+|...-...+. ....+..|..+.+..+|..+
T Consensus 359 iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~-----vP~~GF~i~~l~W~~~g~~i 417 (447)
T KOG4497|consen 359 IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-----VPKKGFNIQKLQWLQPGEFI 417 (447)
T ss_pred hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe-----cCCCCceeeeEEecCCCcEE
Confidence 356789999999999889988888889999977643332 33344667777776665444
No 248
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.37 E-value=4.5e-11 Score=101.12 Aligned_cols=226 Identities=16% Similarity=0.228 Sum_probs=159.0
Q ss_pred ccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCC-eEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 015438 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (407)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~ 199 (407)
.....++.++.+.++...|++|-..|++.-+.+... .+.........|...|..+-|+-..+.+++.+.|..+.---.+
T Consensus 65 ~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e 144 (404)
T KOG1409|consen 65 HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTE 144 (404)
T ss_pred hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeec
Confidence 345788999999999999999999999998877542 1222223345677889999998888888888888766443333
Q ss_pred CCceecccccccccc-------------------ceeeee------cCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEE
Q 015438 200 SGTMESLANVTEIHD-------------------GLDFSA------ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (407)
Q Consensus 200 ~~~~~~~~~~~~~~~-------------------~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 254 (407)
.+....-........ .+.+.. ....+|.+.+.+++|.+....|++|..|..|.+|
T Consensus 145 ~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~w 224 (404)
T KOG1409|consen 145 SGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMW 224 (404)
T ss_pred cCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEE
Confidence 332211111100000 000000 1124788999999999999999999999999999
Q ss_pred EcCCCe-eeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccC------------------------------
Q 015438 255 DLEANK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN------------------------------ 303 (407)
Q Consensus 255 d~~~~~-~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~------------------------------ 303 (407)
|+-.++ ....+.+|...|..++.. ..-..+++++.||.|.+|+.+...
T Consensus 225 digg~~g~~~el~gh~~kV~~l~~~-~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k 303 (404)
T KOG1409|consen 225 DIGGRKGTAYELQGHNDKVQALSYA-QHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRK 303 (404)
T ss_pred eccCCcceeeeeccchhhhhhhhhh-hhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhh
Confidence 997554 334567899999999887 667788899999999999986110
Q ss_pred ------------------------------------------------CCCceeeeeccccCCeEEEEecCCCCEEEEEe
Q 015438 304 ------------------------------------------------VKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (407)
Q Consensus 304 ------------------------------------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 335 (407)
.+..++..+..-..+|+.+.+...-..|+|+|
T Consensus 304 ~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG 383 (404)
T KOG1409|consen 304 QLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSG 383 (404)
T ss_pred hhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecC
Confidence 01112222322234688888888888999999
Q ss_pred CCCcEEEEECCC
Q 015438 336 KDQAIKLWDIRK 347 (407)
Q Consensus 336 ~dg~i~iwd~~~ 347 (407)
.|..|+|||+++
T Consensus 384 ~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 384 TDRVIKIWDVRS 395 (404)
T ss_pred CceEEEEEechh
Confidence 999999999986
No 249
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.34 E-value=9.1e-11 Score=97.26 Aligned_cols=209 Identities=18% Similarity=0.151 Sum_probs=143.6
Q ss_pred CCceEEEEECC---CCC-EEEEEeCCCeEEEEEcCCCeEEeEeeecccc---ceEEEEEEECCCCCeEEEEeCCCeEEEE
Q 015438 124 TSRAYVSQFSA---DGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSL---RWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (407)
Q Consensus 124 ~~~v~~~~~s~---~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~dg~i~vw 196 (407)
++.+..+.|.. +|. .++-+-..|.|.+|..........+...... .....++.|++.+..++++-.+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 45566677764 445 4566667899999986644322222211111 1125678899999999999999999866
Q ss_pred ECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCC-CCEEEEeeCCCeEEEEEcCC-Ceeeee-eeccCCCeE
Q 015438 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEA-NKLSLR-ILAHTSDVN 273 (407)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~-~~~~~~-~~~~~~~v~ 273 (407)
+............. +|..++....|+.. .+++++|+.|+.+..||++. ++.+.. .+.|...|.
T Consensus 149 ~~t~~~le~vq~wk--------------~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~ 214 (339)
T KOG0280|consen 149 YETEMVLEKVQTWK--------------VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVV 214 (339)
T ss_pred ecceeeeeeccccc--------------ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceE
Confidence 55444333322221 47778888888864 46899999999999999993 333333 457899999
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCC-EEEEEeCCCcEEEEECCCCCC
Q 015438 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSS 350 (407)
Q Consensus 274 ~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~ 350 (407)
+|.-+|+.+.++++|+.|..|++||.|+ -++++..-. -.++|..+.++|.-. .|+.+++-.-.+|-++.....
T Consensus 215 SI~ss~~~~~~I~TGsYDe~i~~~DtRn---m~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 215 SIYSSPPKPTYIATGSYDECIRVLDTRN---MGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVL 288 (339)
T ss_pred EEecCCCCCceEEEeccccceeeeehhc---ccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEeccccc
Confidence 9999999999999999999999999994 455554432 347899999998432 344455555566766665433
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=3.4e-10 Score=106.54 Aligned_cols=200 Identities=19% Similarity=0.192 Sum_probs=126.5
Q ss_pred eEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCC---CeEEEEECCCCceeccccccccccceeeeecCC
Q 015438 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (407)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (407)
.|.++|.+.+. .... ..+...+....|+|||+.|+..+.+ ..|.+|++.+++...+....
T Consensus 180 ~l~~~d~~g~~-~~~l---~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~------------- 242 (430)
T PRK00178 180 TLQRSDYDGAR-AVTL---LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE------------- 242 (430)
T ss_pred EEEEECCCCCC-ceEE---ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-------------
Confidence 47778877543 2222 1234468899999999999886643 37999999887654432211
Q ss_pred CCccccEEEEEEeCCCCEEEE-eeCCC--eEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEe-CCC--cEEEE
Q 015438 224 GGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDN--LCKVW 297 (407)
Q Consensus 224 ~~~~~~v~~~~~s~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~-~d~--~i~vw 297 (407)
+.+....|+|||+.|+. .+.+| .|++||+.+++. ..+..+........|+ ++++.|+..+ .++ .|.++
T Consensus 243 ----g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 243 ----GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred ----CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEE
Confidence 12446899999998774 44444 689999988765 3455555566778998 6777665554 334 57777
Q ss_pred eCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCC-C--cEEEEECCCCCCcccccCCCccccccceeeeCCCCC
Q 015438 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-Q--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (407)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 374 (407)
|+. .++.. .+...........|+|+|++|+..+.+ + .|.+||+.+++..... .. ..+ ....|+|+|
T Consensus 317 d~~----~g~~~-~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt---~~--~~~-~~p~~spdg 385 (430)
T PRK00178 317 NVN----GGRAE-RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT---DT--SLD-ESPSVAPNG 385 (430)
T ss_pred ECC----CCCEE-EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc---CC--CCC-CCceECCCC
Confidence 775 44332 222112233457899999999877643 3 4888999876542211 11 111 234689999
Q ss_pred CccCCC
Q 015438 375 RDLKHP 380 (407)
Q Consensus 375 ~~l~~~ 380 (407)
+.+...
T Consensus 386 ~~i~~~ 391 (430)
T PRK00178 386 TMLIYA 391 (430)
T ss_pred CEEEEE
Confidence 888653
No 251
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.32 E-value=1e-10 Score=113.90 Aligned_cols=176 Identities=16% Similarity=0.123 Sum_probs=121.7
Q ss_pred ccccceEEEEEEECCCC-CeEEEEeCCCeEEEEECCCCcee-ccccccccccceeeeecCCCCccccEEEEEEeCCCCEE
Q 015438 165 AKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (407)
Q Consensus 165 ~~~~~~~v~~~~~sp~~-~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 242 (407)
...|...|..++.++.. .++++|+.||+|++|+...-... ...+. ..++.. ....+.++.+.+.++.+
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS-----~ltys~-----~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARS-----ELTYSP-----EGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeee-----eEEEec-----cCCceEEEEeccCCCeE
Confidence 45667778888887765 99999999999999998743221 11100 011111 23378889999999999
Q ss_pred EEeeCCCeEEEEEcCCC--e-----eeeeeecc-CCCeEEE-EecCCCCC-EEEEEeCCCcEEEEeCcccCCCCceeeee
Q 015438 243 VAGSSDDCIYVYDLEAN--K-----LSLRILAH-TSDVNTV-CFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVL 312 (407)
Q Consensus 243 ~~~~~dg~i~i~d~~~~--~-----~~~~~~~~-~~~v~~i-~~s~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 312 (407)
|+++.||.|++.++... + ..+....+ .+.+.++ ++...... .++.+..-+.|..||++ ....+..+
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r----~~~~~w~l 1189 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR----MRHDAWRL 1189 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch----hhhhHHhh
Confidence 99999999999998752 1 11111112 2333333 33323333 78888889999999998 33333332
Q ss_pred c--cccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccc
Q 015438 313 M--GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 313 ~--~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (407)
+ ...+.|++++.+|.+.++++|+..|.+.+||+|=.......
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc
Confidence 2 23567999999999999999999999999999987766655
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=1.1e-10 Score=98.84 Aligned_cols=211 Identities=16% Similarity=0.238 Sum_probs=147.1
Q ss_pred CCceEEEEECCCCC--EEEEEeCCCeEEEEEcCCCeEE---------------------------------eEeeecccc
Q 015438 124 TSRAYVSQFSADGS--LFVAGFQASQIRIYDVERGWKI---------------------------------QKDILAKSL 168 (407)
Q Consensus 124 ~~~v~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~---------------------------------~~~~~~~~~ 168 (407)
...|..+.|.+++. .++..+.|.+|++|.+...... ........|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 56889999999765 4666778999999987532100 111223567
Q ss_pred ceEEEEEEECCCCCeEEEEeCCCeEEEEECCCC-ceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEee
Q 015438 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGS 246 (407)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~ 246 (407)
...|.++.++.|...++++ .|-.|.+|+++-. +...+.. ..+.....-+.-|++..|+|.. +.++..+
T Consensus 164 tyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVD---------IKP~nmEeLteVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVD---------IKPANMEELTEVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred eeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEE---------ccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence 7889999999999988875 5678999998732 2222211 1111222234468899999954 5788888
Q ss_pred CCCeEEEEEcCCCeee----eee------------eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceee
Q 015438 247 SDDCIYVYDLEANKLS----LRI------------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 310 (407)
Q Consensus 247 ~dg~i~i~d~~~~~~~----~~~------------~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 310 (407)
..|+|++.|++....- +.+ ..--..|..+.|+ .+|+++++-.. -+|++||+.. ..+++.
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs-~sGryilsRDy-ltvk~wD~nm---e~~pv~ 308 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFS-HSGRYILSRDY-LTVKLWDLNM---EAKPVE 308 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEc-cCCcEEEEecc-ceeEEEeccc---cCCcce
Confidence 9999999999853210 111 1123467899998 88999987643 5899999962 667777
Q ss_pred eeccccC------------C---eEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 015438 311 VLMGHLE------------G---ITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (407)
Q Consensus 311 ~~~~~~~------------~---i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 349 (407)
++.-|.. . -..++|+.++.+++||+..+..+++++..+.
T Consensus 309 t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 309 TYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 7665532 2 3468899999999999999999999966544
No 253
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.28 E-value=2e-11 Score=112.87 Aligned_cols=228 Identities=19% Similarity=0.298 Sum_probs=164.1
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC--CCeEEEEeCCCeEEEEECCCC
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDVGSG 201 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~dg~i~vwd~~~~ 201 (407)
.+.+.++..+|.|+-+|.++.-| +.+.|++........ ......+.|-.+.|+|. ..+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~-l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRW-LHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCcee-eeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 56788899999999999998766 677787764222211 22233456788899875 345555555566678988644
Q ss_pred ceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCCe-eeeeeeccCCCeEEEEecC
Q 015438 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGD 279 (407)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~i~~s~ 279 (407)
.-..+ .|..+ ||+..|+.+.|+|.. ..+++++.|..|..||+++.. ++..+..-......++|+-
T Consensus 102 s~~aI----------ef~lh---ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny 168 (1081)
T KOG0309|consen 102 SSNAI----------EFVLH---GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY 168 (1081)
T ss_pred Cccce----------EEEEe---cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc
Confidence 32221 12222 588899999999965 488999999999999999864 4455555566778899997
Q ss_pred CCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecC-CCCEEEEEeCCCcEEEEECCCCCCcccccCCC
Q 015438 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 358 (407)
Q Consensus 280 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (407)
.+++.+++ +..+.|++||+| ..+.++..+++|...|..++|.. ....+.+++.|++|++||..+...........
T Consensus 169 k~p~vlas-shg~~i~vwd~r---~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt 244 (1081)
T KOG0309|consen 169 KDPNVLAS-SHGNDIFVWDLR---KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT 244 (1081)
T ss_pred cCcchhhh-ccCCceEEEecc---CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence 77776654 566789999998 35678899999999999999865 33568899999999999998876665554445
Q ss_pred ccccccceeeeC
Q 015438 359 RSYEWDYRWMDY 370 (407)
Q Consensus 359 ~~~~~~v~~~~~ 370 (407)
....|.-+.++|
T Consensus 245 ~~piw~~r~~Pf 256 (1081)
T KOG0309|consen 245 NFPIWRGRYLPF 256 (1081)
T ss_pred cCcceecccccc
Confidence 555666666555
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.28 E-value=1.3e-08 Score=92.71 Aligned_cols=209 Identities=15% Similarity=0.215 Sum_probs=134.3
Q ss_pred CCceEEEEECCCCCEEEEEeC-CCeEEEEEcCCCeEEeEee-ec----------cccceEEEEEEECCCCCeEEEEe-CC
Q 015438 124 TSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDI-LA----------KSLRWTVTDTSLSPDQRHLVYAS-MS 190 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~-~~----------~~~~~~v~~~~~sp~~~~l~~~~-~d 190 (407)
......++++|++++|+++.. +|.|.++++.....+.... .. ........++.|+|+++++++.. ..
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence 345567999999999988864 8999999998732222221 11 11223478899999999888864 33
Q ss_pred CeEEEEECCCCc--eeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEee-CCCeEEEEEcC--CCee--ee
Q 015438 191 PIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLE--ANKL--SL 263 (407)
Q Consensus 191 g~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~--~~~~--~~ 263 (407)
..|.+|++.... ....... .. ........+.|+|+++++++.. .++.|.++++. +++. +.
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~-~~------------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSI-KV------------PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEE-EC------------STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEEEeCCCceEEEeecc-cc------------ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence 579999997655 2221111 00 1122577899999999876655 46789999988 4432 22
Q ss_pred eeec------cCCCeEEEEecCCCCCEEEEEe-CCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEe-
Q 015438 264 RILA------HTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG- 335 (407)
Q Consensus 264 ~~~~------~~~~v~~i~~s~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~- 335 (407)
.+.. .......|+++ +++++|+++. ..+.|.+|++.......+.+..+.........++++|+|++|+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~i~is-pdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAIS-PDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE--TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred EeeeccccccccCCceeEEEe-cCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 2211 11257889998 7788777765 5678999999522112233334433344578999999999999887
Q ss_pred CCCcEEEEECC
Q 015438 336 KDQAIKLWDIR 346 (407)
Q Consensus 336 ~dg~i~iwd~~ 346 (407)
.++.|.+|+++
T Consensus 312 ~s~~v~vf~~d 322 (345)
T PF10282_consen 312 DSNTVSVFDID 322 (345)
T ss_dssp TTTEEEEEEEE
T ss_pred CCCeEEEEEEe
Confidence 57789999875
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=6.5e-10 Score=104.48 Aligned_cols=199 Identities=21% Similarity=0.152 Sum_probs=121.4
Q ss_pred eEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCC---CeEEEEECCCCceeccccccccccceeeeecCC
Q 015438 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (407)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (407)
.|.++|.+.... ... ......+.+..|+|||+.|+..+.+ ..|++||+.+++...+....
T Consensus 199 ~l~i~d~dG~~~-~~l---~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~------------- 261 (448)
T PRK04792 199 QLMIADYDGYNE-QML---LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP------------- 261 (448)
T ss_pred EEEEEeCCCCCc-eEe---ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-------------
Confidence 577778765422 221 1233468889999999999886543 36899999887653332211
Q ss_pred CCccccEEEEEEeCCCCEEEE-eeCCC--eEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEe-CCC--cEEEE
Q 015438 224 GGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDN--LCKVW 297 (407)
Q Consensus 224 ~~~~~~v~~~~~s~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~-~d~--~i~vw 297 (407)
.......|+|||+.|+. .+.+| .|+++|+.+++. ..+..+.......+|+ ++++.|+..+ .++ .|.++
T Consensus 262 ----g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 262 ----GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRV 335 (448)
T ss_pred ----CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEE
Confidence 12345799999997765 45555 488889987765 4454555567788998 6777665554 344 46666
Q ss_pred eCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeC-CC--cEEEEECCCCCCcccccCCCccccccceeeeCCCCC
Q 015438 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (407)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 374 (407)
|+. .++. ..+..........+|+|||++|+..+. ++ .|.++|+.+++... +.. ...+ ....|+|++
T Consensus 336 dl~----~g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~----~~~d-~~ps~spdG 404 (448)
T PRK04792 336 NLA----SGKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS----TRLD-ESPSVAPNG 404 (448)
T ss_pred ECC----CCCE-EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC----CCCC-CCceECCCC
Confidence 765 3433 222222223345789999999887664 34 35567777664322 111 1111 123688998
Q ss_pred CccCC
Q 015438 375 RDLKH 379 (407)
Q Consensus 375 ~~l~~ 379 (407)
+.+..
T Consensus 405 ~~I~~ 409 (448)
T PRK04792 405 TMVIY 409 (448)
T ss_pred CEEEE
Confidence 87654
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=1.8e-08 Score=86.49 Aligned_cols=266 Identities=16% Similarity=0.165 Sum_probs=167.4
Q ss_pred ccCCCceEEEEECCCCCEEEEEeCC---CeEEEEEcCC--CeEEeEeeeccccceEEEEEEECCCCCeEEEEeC-CCeEE
Q 015438 121 DQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVER--GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVH 194 (407)
Q Consensus 121 ~~h~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~i~ 194 (407)
-...+.++-++|+|+++.|.++..+ |.|..|.++. |. +...........+...+++++++++++++.. .|.|.
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~-Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGR-LTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCe-EEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 3457788899999999998887654 6788877764 42 2222112222223477999999999999874 57999
Q ss_pred EEECCC-CceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC-CCeEEEEEcCCCeeeeee---eccC
Q 015438 195 IVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRI---LAHT 269 (407)
Q Consensus 195 vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~---~~~~ 269 (407)
++-+.. +.......... +.+. .++ ....+.-+....+.|++++|++..- -..|.+|++..++....- ....
T Consensus 115 v~p~~~dG~l~~~v~~~~-h~g~--~p~-~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G 190 (346)
T COG2706 115 VYPLQADGSLQPVVQVVK-HTGS--GPH-ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG 190 (346)
T ss_pred EEEcccCCccccceeeee-cCCC--CCC-ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC
Confidence 999965 43322211111 0000 000 0001112778899999999888743 236999999977643221 1334
Q ss_pred CCeEEEEecCCCCCEEEEEe-CCCcEEEEeCcccCCCCceeeeecc------ccCCeEEEEecCCCCEEEEEeC-CCcEE
Q 015438 270 SDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMG------HLEGITFIDSRGDGRYLISNGK-DQAIK 341 (407)
Q Consensus 270 ~~v~~i~~s~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~s~~~-dg~i~ 341 (407)
.....|.|+ +++++..+.+ -+++|-+|........-..++.+.. -..+..+|..++||++|.++.. ...|-
T Consensus 191 ~GPRHi~FH-pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 191 AGPRHIVFH-PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred CCcceEEEc-CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 556889998 8888877665 5899999998732112222322221 1234677889999999998864 45788
Q ss_pred EEECCCCCCcccccCCCccccccceeeeCCCCCCccCCC--CCcceEEEeCCc
Q 015438 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP--CDQSVATYKGHS 392 (407)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~v~~~~gh~ 392 (407)
+|.+........+.........-.+...|++++++|.++ .++.+.+|.-..
T Consensus 270 ~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 270 VFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred EEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 998876544333322223333335677889999888765 356788886543
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.2e-09 Score=101.80 Aligned_cols=205 Identities=11% Similarity=0.014 Sum_probs=122.0
Q ss_pred CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEE---EEeCC--CeEEEEECCCCceeccccccccccceeeee
Q 015438 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV---YASMS--PIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (407)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~---~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 220 (407)
..|.+.|.+.+... .+. .......+-.|+|||+.++ ++..+ ..|.+.++.+++...+....
T Consensus 165 ~~l~~~d~dG~~~~-~lt---~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~---------- 230 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLT---QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ---------- 230 (428)
T ss_pred ceEEEEcCCCCCce-Ecc---cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC----------
Confidence 36777787655322 211 1233466789999997532 33333 46888898877654443321
Q ss_pred cCCCCccccEEEEEEeCCCCEEEEeeC-----CCeEEEEEcCCC---eeeeeeeccCCCeEEEEecCCCCCEEEEEe-CC
Q 015438 221 ADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGS-DD 291 (407)
Q Consensus 221 ~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~~---~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~-~d 291 (407)
+.....+|+|||+.|+..+. +-.+..|++..+ +.........+.....+|+ ++|+.|+..+ .+
T Consensus 231 -------g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS-PDG~~Laf~s~~~ 302 (428)
T PRK01029 231 -------GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS-PDGTRLVFVSNKD 302 (428)
T ss_pred -------CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC-CCCCEEEEEECCC
Confidence 13445799999998877553 223444777653 3222222223345678998 7787666554 56
Q ss_pred CcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCC---CcEEEEECCCCCCcccccCCCccccccceee
Q 015438 292 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 368 (407)
Q Consensus 292 ~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 368 (407)
|...+|.+... ..+.....+..+...+....|+|||++|+..+.+ ..|.+||+.+++..... .....+...
T Consensus 303 g~~~ly~~~~~-~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-----~~~~~~~~p 376 (428)
T PRK01029 303 GRPRIYIMQID-PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-----TSPENKESP 376 (428)
T ss_pred CCceEEEEECc-ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-----CCCCCccce
Confidence 65555544210 0122334444455567788999999999876643 46999999887653221 112234557
Q ss_pred eCCCCCCccC
Q 015438 369 DYPPQARDLK 378 (407)
Q Consensus 369 ~~~~~~~~l~ 378 (407)
.|+|+++.|.
T Consensus 377 ~wSpDG~~L~ 386 (428)
T PRK01029 377 SWAIDSLHLV 386 (428)
T ss_pred EECCCCCEEE
Confidence 7899998765
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.25 E-value=4.4e-10 Score=95.22 Aligned_cols=213 Identities=15% Similarity=0.198 Sum_probs=149.9
Q ss_pred ccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCC-CeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEE
Q 015438 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd 197 (407)
.++||...|++...-|-..-+++.+.|.+++||--.+ ++....+ ......+++++.+.++...|+.|-..|++.-+.
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 4578888899888888888899999999999996443 3222221 122344689999999999999999999998887
Q ss_pred CCCCcee-ccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCC---------------------------
Q 015438 198 VGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--------------------------- 249 (407)
Q Consensus 198 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------------------- 249 (407)
+...-.. ...+.. ..|...+..+-|+.....+++.+.|.
T Consensus 97 ~sedfnkm~~~r~~-------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~ 163 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDY-------------LAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQF 163 (404)
T ss_pred hhhhhhhcchhhhh-------------hhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCce
Confidence 6532111 011111 12344455555544444444444443
Q ss_pred ------------eEEEEEc--CCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccc
Q 015438 250 ------------CIYVYDL--EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH 315 (407)
Q Consensus 250 ------------~i~i~d~--~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 315 (407)
.|.+..+ ..-.++.++.+|.+.+.+++|. +...+|.+|..|..+.+||+.- .......+.+|
T Consensus 164 d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd-~~~~~LfSg~~d~~vi~wdigg---~~g~~~el~gh 239 (404)
T KOG1409|consen 164 DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD-PGQRLLFSGASDHSVIMWDIGG---RKGTAYELQGH 239 (404)
T ss_pred eeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc-CCCcEEEeccccCceEEEeccC---Ccceeeeeccc
Confidence 3322222 2234556677899999999996 7788999999999999999962 23345677889
Q ss_pred cCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 015438 316 LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (407)
Q Consensus 316 ~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (407)
...|..+..-+--+.|++++.||.|.+||++....
T Consensus 240 ~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 240 NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred hhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 99999999888889999999999999999986543
No 259
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=3.2e-10 Score=108.94 Aligned_cols=197 Identities=15% Similarity=0.198 Sum_probs=141.7
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeE
Q 015438 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251 (407)
Q Consensus 172 v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 251 (407)
|....+.-+.+.++.++.+..+.+||...+.........+.- . -....-+.++++.-++++|+.-+.|
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~----~--------l~~~~~~g~s~~~~~i~~gsv~~~i 157 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERC----T--------LYSSLIIGDSAEELYIASGSVFGEI 157 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceE----E--------EEeEEEEeccCcEEEEEeccccccE
Confidence 444555667888999999999999999876543322211100 0 0012234455666689999999999
Q ss_pred EEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceee-eeccccCCeEEEEecCCCCE
Q 015438 252 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRY 330 (407)
Q Consensus 252 ~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~ 330 (407)
.+|+....+.-..+.+|.+.+.++.++ .+|.++++.|.|.++|+|++. +.+... ..-+|...|..++|.|+ .
T Consensus 158 ivW~~~~dn~p~~l~GHeG~iF~i~~s-~dg~~i~s~SdDRsiRlW~i~----s~~~~~~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 158 IVWKPHEDNKPIRLKGHEGSIFSIVTS-LDGRYIASVSDDRSIRLWPID----SREVLGCTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred EEEeccccCCcceecccCCceEEEEEc-cCCcEEEEEecCcceeeeecc----cccccCcccccccceeEEEEeccc--e
Confidence 999997544444678999999999998 999999999999999999998 444443 66789999999999988 8
Q ss_pred EEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCC-CccCCCCCcceEEEeCC
Q 015438 331 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-RDLKHPCDQSVATYKGH 391 (407)
Q Consensus 331 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~v~~~~gh 391 (407)
++|+++|.+.++|+.+- +.+..+......+.|. ++.++.. -.++.+.|+.++.|+-+
T Consensus 231 i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~---~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWK---IAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred eEEeccceEEEEEeccc-ceehhhhhhhhcceeE---EEEcCCceEEEeeccCcchhhhhhh
Confidence 99999999999996554 3333443333444443 4555554 44456778888888644
No 260
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.24 E-value=3.1e-09 Score=94.71 Aligned_cols=274 Identities=13% Similarity=0.077 Sum_probs=170.0
Q ss_pred CCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC---
Q 015438 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--- 191 (407)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg--- 191 (407)
.....+..-+-++..++|||.|.+|++... ..|.+|.-.....+.... |. .|..+.|+|++++|.+=+..+
T Consensus 23 ~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~----~~-~V~~~~fSP~~kYL~tw~~~pi~~ 96 (561)
T COG5354 23 VIHTRFESENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFR----HP-DVKYLDFSPNEKYLVTWSREPIIE 96 (561)
T ss_pred cccccccccCcchhheeecCcchheehhhc-cceEEccccchhheeeee----cC-CceecccCcccceeeeeccCCccC
Confidence 334445556788999999999999998765 459999877664333321 22 389999999999999865543
Q ss_pred ------------eEEEEECCCCceecccccccccc----ceeeeecCC-------------------CC------ccccE
Q 015438 192 ------------IVHIVDVGSGTMESLANVTEIHD----GLDFSAADD-------------------GG------YSFGI 230 (407)
Q Consensus 192 ------------~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~~-------------------~~------~~~~v 230 (407)
.+.+||+.++.....+....... -+.++.... .. ....|
T Consensus 97 pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 97 PEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGI 176 (561)
T ss_pred hhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccce
Confidence 49999999987654433222210 011111100 00 12457
Q ss_pred EEEEEeCCC--CEEEE-----eeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEe-----------CCC
Q 015438 231 FSLKFSTDG--RELVA-----GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-----------DDN 292 (407)
Q Consensus 231 ~~~~~s~~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~-----------~d~ 292 (407)
....|+|.+ ..|+. ++..+.+++|.+..++.+..-.-....-..+.|. ..|++|++-- ...
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksnKsyfges 255 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSNKSYFGES 255 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecccceeccc
Confidence 788888854 34444 3567889999998776655433333344568887 6666654321 124
Q ss_pred cEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEe--CCCcEEEEECCCCCCcccccCCCccccccceeeeC
Q 015438 293 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 370 (407)
Q Consensus 293 ~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 370 (407)
.+.+++++ ...+.......++|...+|.|.++.+++.+ .+-.+.++|++.. .... .....-.-+.|
T Consensus 256 nLyl~~~~-----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~------~Pe~~rNT~~f 323 (561)
T COG5354 256 NLYLLRIT-----ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY------FPEQKRNTIFF 323 (561)
T ss_pred eEEEEeec-----ccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe------cCCcccccccc
Confidence 67888885 333333335678999999999988776655 7889999999875 2111 12222334567
Q ss_pred CCCCCccCCCC----CcceEEEeCCc--------cceeeEEEeeCCCCC
Q 015438 371 PPQARDLKHPC----DQSVATYKGHS--------VLRTLIRCHFSPVYR 407 (407)
Q Consensus 371 ~~~~~~l~~~~----~~~v~~~~gh~--------~~~~~~~~~fsp~~~ 407 (407)
+|..+++..+. -+.+.+|+--. +.-+.-.|.||||.+
T Consensus 324 sp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~q 372 (561)
T COG5354 324 SPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQ 372 (561)
T ss_pred cCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCce
Confidence 78777665432 23344443221 112356788999874
No 261
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=7.4e-11 Score=99.91 Aligned_cols=168 Identities=18% Similarity=0.274 Sum_probs=126.1
Q ss_pred EEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC-----
Q 015438 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----- 259 (407)
Q Consensus 185 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----- 259 (407)
++.+.+..+-+-+++++-..... -++.|.++.|...+++++.|..+|.|..+|++.+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~------------------sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~ 289 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ------------------SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG 289 (425)
T ss_pred ecccccceeEEEEeecccccccc------------------cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC
Confidence 44455667778888877543322 2236888999998999999999999999999865
Q ss_pred eeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEE--ecCCCCEEEEEeCC
Q 015438 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID--SRGDGRYLISNGKD 337 (407)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~--~s~~~~~l~s~~~d 337 (407)
.+...+ -|.+.|+++..-..++++|++.+.+|+|++||+|..+ .++.+..+.||...-.-+- ..+....++++|.|
T Consensus 290 ~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K-~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 290 WCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK-CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred cceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhh-cccceeeeecccccccccccccccccceEEEccCe
Confidence 344444 5899999998875578899999999999999999432 2334888999966433333 46677889999999
Q ss_pred CcEEEEECCCCCCcccccCCCccccccceeeeCCC
Q 015438 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 372 (407)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 372 (407)
...+||.++.+..+.+..........++..++|..
T Consensus 368 cytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 99999999998887776655555555666666643
No 262
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.22 E-value=1.5e-08 Score=90.28 Aligned_cols=216 Identities=19% Similarity=0.218 Sum_probs=140.3
Q ss_pred ECCCCCEEEEEeC----------CCeEEEEEcCCCeEEeEeeecccc----ceEEEEEEECCCCCeEEEEe-C-CCeEEE
Q 015438 132 FSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKSL----RWTVTDTSLSPDQRHLVYAS-M-SPIVHI 195 (407)
Q Consensus 132 ~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~-~-dg~i~v 195 (407)
+||||+.|+++.. +..|.+||..+.+.+..+...... ......++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998877655 788999999998777665543221 12244689999999999876 3 689999
Q ss_pred EECCCCceeccccccccccceee------eecCCCC---------ccccEEEE--------------EEeC-CCCEEEEe
Q 015438 196 VDVGSGTMESLANVTEIHDGLDF------SAADDGG---------YSFGIFSL--------------KFST-DGRELVAG 245 (407)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~------~~~~~~~---------~~~~v~~~--------------~~s~-~~~~l~~~ 245 (407)
.|+.+++................ ..+.++. ....+... .|.+ +|+++++.
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 99999887654443322111110 0000000 00011111 2344 77777776
Q ss_pred eCCCeEEEEEcCCC-----eeeeeeec-------cCCCeEEEEecCCCCCEEEEEe----------CCCcEEEEeCcccC
Q 015438 246 SSDDCIYVYDLEAN-----KLSLRILA-------HTSDVNTVCFGDESGHLIYSGS----------DDNLCKVWDRRCLN 303 (407)
Q Consensus 246 ~~dg~i~i~d~~~~-----~~~~~~~~-------~~~~v~~i~~s~~~~~~l~s~~----------~d~~i~vwd~~~~~ 303 (407)
.+ |.|++.|+... +....+.. ..+...-++++ ++++.++... ..+.|.++|..
T Consensus 213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~-~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~--- 287 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH-RARDRIYLLADQRAKWTHKTASRFLFVVDAK--- 287 (352)
T ss_pred cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc-CCCCEEEEEecCCccccccCCCCEEEEEECC---
Confidence 66 99999996443 22222211 23344559998 5555555532 12579999998
Q ss_pred CCCceeeeeccccCCeEEEEecCCCC-EEEEEe-CCCcEEEEECCCCCCcccc
Q 015438 304 VKGKPAGVLMGHLEGITFIDSRGDGR-YLISNG-KDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 304 ~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~ 354 (407)
+.+.+..+.- ...+..++++||++ +|++.. .++.|.++|+.+++.+..+
T Consensus 288 -t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 288 -TGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred -CCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 7777777652 44788999999999 877666 5788999999998877654
No 263
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.19 E-value=4e-10 Score=97.49 Aligned_cols=163 Identities=17% Similarity=0.229 Sum_probs=113.5
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEECCCCce-eccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCC-
Q 015438 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD- 249 (407)
Q Consensus 172 v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg- 249 (407)
+..+..+|.++++|.+..+....++++..... ........ +. ..-+.+.|..+.....++..-|
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~------v~--------~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC------VP--------KRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee------cc--------cCcceeeeeeccceEEEEeecCC
Confidence 44556788899999988888877887765443 11111000 00 0234455555555454444444
Q ss_pred --eEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeee-ccccCCeEEEEecC
Q 015438 250 --CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRG 326 (407)
Q Consensus 250 --~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~i~~~~~s~ 326 (407)
.+.+|....+.+.. +-+|-+-+.+|+|+ +++++++++..|..|++-... ....+..+ .||..-|..++.-+
T Consensus 131 ~~~~di~s~~~~~~~~-~lGhvSml~dVavS-~D~~~IitaDRDEkIRvs~yp----a~f~IesfclGH~eFVS~isl~~ 204 (390)
T KOG3914|consen 131 VYSFDILSADSGRCEP-ILGHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYP----ATFVIESFCLGHKEFVSTISLTD 204 (390)
T ss_pred ceeeeeecccccCcch-hhhhhhhhheeeec-CCCCEEEEecCCceEEEEecC----cccchhhhccccHhheeeeeecc
Confidence 45555554455543 44899999999998 788999999999999998875 44444444 47999999999876
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCccccc
Q 015438 327 DGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (407)
Q Consensus 327 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (407)
+ +.|+++|.|++|++||+++++.+.++.
T Consensus 205 ~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 205 N-YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred C-ceeeecCCCCcEEEEecccCCcccccc
Confidence 4 458999999999999999999997763
No 264
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=5.8e-08 Score=83.48 Aligned_cols=207 Identities=14% Similarity=0.196 Sum_probs=137.2
Q ss_pred EEEEECCCCCEEEEEeC-CCeEEEEEcCCCeEEeEeeeccccceE----------EEEEEECCCCCeEEEEeC-CCeEEE
Q 015438 128 YVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWT----------VTDTSLSPDQRHLVYASM-SPIVHI 195 (407)
Q Consensus 128 ~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~----------v~~~~~sp~~~~l~~~~~-dg~i~v 195 (407)
.-++++++|++++++.. .|.|.++.+...-.+........|.+. +....+.|++++|++... -..|.+
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence 78999999999988765 688999998653222222222223222 788899999999998753 246999
Q ss_pred EECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC-CCeEEEEEcCCC-eeeeeee-------
Q 015438 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEAN-KLSLRIL------- 266 (407)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~------- 266 (407)
|++..+.........- . ....-.-|.|+|++++.++..+ +++|.+|..... ..+..++
T Consensus 172 y~~~dg~L~~~~~~~v-~------------~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 172 YDLDDGKLTPADPAEV-K------------PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred EEcccCcccccccccc-C------------CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 9999776543322111 0 1124677999999998777654 889999998763 2222222
Q ss_pred --ccCCCeEEEEecCCCCCEEEEEeC-CCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCC-CcEEE
Q 015438 267 --AHTSDVNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-QAIKL 342 (407)
Q Consensus 267 --~~~~~v~~i~~s~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-g~i~i 342 (407)
.......+|..+ ++|++|+++.. ...|-+|.+.........+.....+........|++.|++|+++..+ ..|.+
T Consensus 239 dF~g~~~~aaIhis-~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~v 317 (346)
T COG2706 239 DFTGTNWAAAIHIS-PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITV 317 (346)
T ss_pred ccCCCCceeEEEEC-CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEE
Confidence 123456788998 89999988753 34788888763211111222222334446788999999999998864 56999
Q ss_pred EECCCC
Q 015438 343 WDIRKM 348 (407)
Q Consensus 343 wd~~~~ 348 (407)
|.+...
T Consensus 318 f~~d~~ 323 (346)
T COG2706 318 FERDKE 323 (346)
T ss_pred EEEcCC
Confidence 987753
No 265
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=5.1e-08 Score=90.48 Aligned_cols=192 Identities=13% Similarity=0.094 Sum_probs=120.1
Q ss_pred ceEEEEECCCCCE-EEEEeC---CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEe-C--CCeEEEEEC
Q 015438 126 RAYVSQFSADGSL-FVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-M--SPIVHIVDV 198 (407)
Q Consensus 126 ~v~~~~~s~~~~~-l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~--dg~i~vwd~ 198 (407)
.+....|+|||+. ++..+. +..|.++|+.+++... +.. ..+......|+|||+.|+... . +..|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-Eec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 7788999999985 554433 3569999998874332 222 222355678999998877543 2 357888898
Q ss_pred CCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC-C--eEEEEEcCCCeeeeeeeccCCCeEEE
Q 015438 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLRILAHTSDVNTV 275 (407)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~v~~i 275 (407)
.++....+..... ......|+|||+.|+..+.. + .|++.|+.+++....... ... ..
T Consensus 265 ~~g~~~~LT~~~~-----------------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~ 324 (419)
T PRK04043 265 NTKTLTQITNYPG-----------------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NS 324 (419)
T ss_pred CCCcEEEcccCCC-----------------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--Cc
Confidence 8776544322111 12345799999987776643 2 689999988776333322 111 24
Q ss_pred EecCCCCCEEEEEeCC---------CcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCC-C--cEEEE
Q 015438 276 CFGDESGHLIYSGSDD---------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-Q--AIKLW 343 (407)
Q Consensus 276 ~~s~~~~~~l~s~~~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-g--~i~iw 343 (407)
.|+ ++|+.|+..+.. ..|.+.|+. .+. ...+... .......|+|||+.|+..+.+ + .+.+.
T Consensus 325 ~~S-PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~----~g~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 325 SVS-TYKNYIVYSSRETNNEFGKNTFNLYLISTN----SDY-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred eEC-CCCCEEEEEEcCCCcccCCCCcEEEEEECC----CCC-eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 898 677777665543 267777875 333 3334332 223358899999988766543 2 36666
Q ss_pred ECCCC
Q 015438 344 DIRKM 348 (407)
Q Consensus 344 d~~~~ 348 (407)
++...
T Consensus 398 ~l~g~ 402 (419)
T PRK04043 398 RLNYN 402 (419)
T ss_pred ecCCC
Confidence 66543
No 266
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.16 E-value=6.6e-10 Score=96.15 Aligned_cols=165 Identities=21% Similarity=0.220 Sum_probs=110.8
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEE---eCCCeEEEEECCCC
Q 015438 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA---SMSPIVHIVDVGSG 201 (407)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~~dg~i~vwd~~~~ 201 (407)
.....+..++.++++|.+..+....++++....+..+..........-+++.|..+......+ +....+.+|....+
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 344566788889999988888887777766543211111111111123344444444444444 34445555555443
Q ss_pred ceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeee-eccCCCeEEEEecCC
Q 015438 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDE 280 (407)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~s~~ 280 (407)
..... -||-.-+++++|+||+++|+++..|..|++-.......+..+ -+|..-|..++.-
T Consensus 143 ~~~~~-----------------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~-- 203 (390)
T KOG3914|consen 143 RCEPI-----------------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT-- 203 (390)
T ss_pred Ccchh-----------------hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--
Confidence 33222 257778999999999999999999999999887765555554 3799999999994
Q ss_pred CCCEEEEEeCCCcEEEEeCcccCCCCceeeee
Q 015438 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 312 (407)
Q Consensus 281 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 312 (407)
++..|++||.|++|++||++ +++.+..+
T Consensus 204 ~~~~LlS~sGD~tlr~Wd~~----sgk~L~t~ 231 (390)
T KOG3914|consen 204 DNYLLLSGSGDKTLRLWDIT----SGKLLDTC 231 (390)
T ss_pred cCceeeecCCCCcEEEEecc----cCCccccc
Confidence 56678999999999999998 77766544
No 267
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.16 E-value=5e-08 Score=81.41 Aligned_cols=213 Identities=19% Similarity=0.194 Sum_probs=133.9
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCe--EEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccc
Q 015438 130 SQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (407)
Q Consensus 130 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 207 (407)
++.+.+|+.||+. .|..|.|-...+.- .+.+....+...-.-..++||||+.+||.+...|+|+++|+.......+.
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 5678899988876 67888888766531 11222223333334678999999999999999999999999865543222
Q ss_pred cccccccceeeeecCCCCccccEEEEEEeCCC------CEEEEeeCCCeEEEEEcCCC-----eeeeeee---ccCCCeE
Q 015438 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG------RELVAGSSDDCIYVYDLEAN-----KLSLRIL---AHTSDVN 273 (407)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~~~~~dg~i~i~d~~~~-----~~~~~~~---~~~~~v~ 273 (407)
..... .+.....|..|.|-+.. ..|++-..+|.++-|-+..+ +....+. .+...|.
T Consensus 82 p~~~~----------~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~ 151 (282)
T PF15492_consen 82 PAMSF----------PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGIN 151 (282)
T ss_pred ccccc----------CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCcee
Confidence 21110 11233467777776532 24666677888877765322 2222222 2467899
Q ss_pred EEEecCCCCCEEEEEeC-CC----------cEEEEeCcccCCCCce-----------------ee-----ee---ccccC
Q 015438 274 TVCFGDESGHLIYSGSD-DN----------LCKVWDRRCLNVKGKP-----------------AG-----VL---MGHLE 317 (407)
Q Consensus 274 ~i~~s~~~~~~l~s~~~-d~----------~i~vwd~~~~~~~~~~-----------------~~-----~~---~~~~~ 317 (407)
++.++ +..++|+.|+. .. -+.-|.+-+..+-.++ .. .+ .....
T Consensus 152 ~~vy~-p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d 230 (282)
T PF15492_consen 152 SAVYH-PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQD 230 (282)
T ss_pred EEEEc-CCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCC
Confidence 99998 55566666653 21 2555654311000000 00 00 11245
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccc
Q 015438 318 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 318 ~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (407)
.|..+..||||..||+...+|.|.+|++.+.+.....
T Consensus 231 ~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 231 GIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred ceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 7899999999999999999999999999998776544
No 268
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.16 E-value=5e-09 Score=95.04 Aligned_cols=165 Identities=19% Similarity=0.162 Sum_probs=126.7
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccc
Q 015438 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (407)
Q Consensus 136 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 215 (407)
-..++-|...|.|.+|++..++. ........|.+.|.++.++.+...|.+++.|+.+..|+.......+.....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~i-t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~----- 143 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEI-TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ----- 143 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeE-EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-----
Confidence 34678888899999999988744 444455678889999999999999999999999999999988776655432
Q ss_pred eeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCC-----CCEEEEE-e
Q 015438 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES-----GHLIYSG-S 289 (407)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~-----~~~l~s~-~ 289 (407)
+..+.+++.+|||..+++++ +.|.+||+++++.+..|.+|.++|.++.|- .. |.+++++ .
T Consensus 144 -----------~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~-~~~~g~~G~~vLssa~ 209 (541)
T KOG4547|consen 144 -----------KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFT-TLIDGIIGKYVLSSAA 209 (541)
T ss_pred -----------CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEE-Eeccccccceeeeccc
Confidence 23688999999999999886 679999999999999999999999999996 44 4555544 4
Q ss_pred CCCcEEEEeCcccCCCCceeeeeccccCCeE
Q 015438 290 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (407)
Q Consensus 290 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~ 320 (407)
.+..+.+|-++...........+.....+++
T Consensus 210 ~~r~i~~w~v~~~~kkks~~~sl~~~dipv~ 240 (541)
T KOG4547|consen 210 AERGITVWVVEKEDKKKSLSCSLTVPDIPVT 240 (541)
T ss_pred cccceeEEEEEcccccchhheeeccCCCCeE
Confidence 5667888877632223333444444444443
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.16 E-value=2.7e-10 Score=114.92 Aligned_cols=187 Identities=16% Similarity=0.188 Sum_probs=146.3
Q ss_pred eEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCC
Q 015438 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (407)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 249 (407)
..|.++.=+|...+-++|+.||.+++|....++.....+.. |. ..|+.+.|+.+|+.+.++..||
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~--------------g~-s~vtr~~f~~qGnk~~i~d~dg 2273 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA--------------GN-SRVTRSRFNHQGNKFGIVDGDG 2273 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc--------------Cc-chhhhhhhcccCCceeeeccCC
Confidence 35888888999999999999999999999887765544332 12 5789999999999999999999
Q ss_pred eEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEe---CCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecC
Q 015438 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (407)
Q Consensus 250 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 326 (407)
.+.+|... .++....+.|.....+..|- . ..+++++ .++.+.+||.-.. +..-..-..|.++++++++.|
T Consensus 2274 ~l~l~q~~-pk~~~s~qchnk~~~Df~Fi-~--s~~~tag~s~d~~n~~lwDtl~~---~~~s~v~~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2274 DLSLWQAS-PKPYTSWQCHNKALSDFRFI-G--SLLATAGRSSDNRNVCLWDTLLP---PMNSLVHTCHDGGATVLAYAP 2346 (2439)
T ss_pred ceeecccC-CcceeccccCCccccceeee-e--hhhhccccCCCCCcccchhcccC---cccceeeeecCCCceEEEEcC
Confidence 99999987 77777888999999999996 3 5667665 4689999997522 222222378999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCCcceEEEeCC
Q 015438 327 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (407)
Q Consensus 327 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh 391 (407)
..+.|++||.+|.|++||++..+....++. ......++..+..+.+++|.-.
T Consensus 2347 ~~qllisggr~G~v~l~D~rqrql~h~~~~-------------~~~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------------LDTREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred cceEEEecCCcCcEEEeehHHHHHHHHhhh-------------hhhhheeeccCcccceEEEEcc
Confidence 999999999999999999998877655432 1233345555667778888643
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.14 E-value=3e-08 Score=87.83 Aligned_cols=225 Identities=19% Similarity=0.196 Sum_probs=151.7
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeec-cc---c--ceEEE---EEE-ECC-CCCeEEEEeCCCeEEEEECCCC
Q 015438 133 SADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KS---L--RWTVT---DTS-LSP-DQRHLVYASMSPIVHIVDVGSG 201 (407)
Q Consensus 133 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~---~--~~~v~---~~~-~sp-~~~~l~~~~~dg~i~vwd~~~~ 201 (407)
+.||+.++.. ..|.|.+||.++.. +..+... .- . ..-+. -+. |++ +|.+++..+. |...|.+...+
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~-lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDS-LEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCc-ceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 3567777765 45889999988752 2222111 10 0 00011 111 333 6788888776 56667665544
Q ss_pred ceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCC-eEEEEEcCCCeeeeeeeccCCCeEEEEecCC
Q 015438 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (407)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~ 280 (407)
-.+++ ++.+.|.-..+..+++-++.|..|| .+-|+|.++++. ..+...-+.|.++..+ +
T Consensus 352 ~~iqv------------------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs-~ 411 (668)
T COG4946 352 YSIQV------------------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVS-P 411 (668)
T ss_pred eeEEc------------------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEc-C
Confidence 43332 2444688888888888899999999 899999998875 4555677899999998 8
Q ss_pred CCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCC----cEEEEECCCCCCcccccC
Q 015438 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ----AIKLWDIRKMSSNASCNL 356 (407)
Q Consensus 281 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~ 356 (407)
+|+.++.+.....|-+.|+. ++++...-+...+-|+...|+|++++||-+--+| .|+++|+..++.....
T Consensus 412 dGK~~vvaNdr~el~vidid----ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-- 485 (668)
T COG4946 412 DGKKVVVANDRFELWVIDID----NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-- 485 (668)
T ss_pred CCcEEEEEcCceEEEEEEec----CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec--
Confidence 99999999888899999998 6665544445566799999999999999776554 5999999987654321
Q ss_pred CCccccccceeeeCCCCCCccC--------CCCCcceEEEe
Q 015438 357 GFRSYEWDYRWMDYPPQARDLK--------HPCDQSVATYK 389 (407)
Q Consensus 357 ~~~~~~~~v~~~~~~~~~~~l~--------~~~~~~v~~~~ 389 (407)
.....++ +-+|.|++++|- .+.|..+..|.
T Consensus 486 --T~ta~Df-sPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~ 523 (668)
T COG4946 486 --TPTAYDF-SPAFDPDGRYLYFLSARSLDPSNDRVIFNFS 523 (668)
T ss_pred --CCccccc-CcccCCCCcEEEEEeccccCCCCCeeEEEEE
Confidence 1111121 246888887664 34566665543
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.14 E-value=1.5e-09 Score=90.84 Aligned_cols=226 Identities=16% Similarity=0.266 Sum_probs=147.1
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEE-eE-eeecccc------------ceEEEEEEECCCC--CeEEEE
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI-QK-DILAKSL------------RWTVTDTSLSPDQ--RHLVYA 187 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~-~~~~~~~------------~~~v~~~~~sp~~--~~l~~~ 187 (407)
...|+++.|...|.++++|...|.|.+|.-+...-. .+ ....++| ...|..+.|..++ ..++.+
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 567999999999999999999999999986553211 10 0011222 2357788886643 356677
Q ss_pred eCCCeEEEEECCCCceeccc----------------------ccccc--ccc-eeeeec--CCCCccccEEEEEEeCCCC
Q 015438 188 SMSPIVHIVDVGSGTMESLA----------------------NVTEI--HDG-LDFSAA--DDGGYSFGIFSLKFSTDGR 240 (407)
Q Consensus 188 ~~dg~i~vwd~~~~~~~~~~----------------------~~~~~--~~~-~~~~~~--~~~~~~~~v~~~~~s~~~~ 240 (407)
+.|.+|++|.+.......+. ..... +.. +...+. ....|..-|+++.|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 88999999998654211000 00000 000 001111 1256788899999999888
Q ss_pred EEEEeeCCCeEEEEEcCCCee---eeeeeccC-----CCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCC-------
Q 015438 241 ELVAGSSDDCIYVYDLEANKL---SLRILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK------- 305 (407)
Q Consensus 241 ~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~-----~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~------- 305 (407)
.++++ .|=.|.+|++..... +.-++.|. .-|++..|+|..-+.+.-++..|.|++-|+|....-
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77776 567799999874332 22333343 347888999888888888899999999999832110
Q ss_pred -----CceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCc
Q 015438 306 -----GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (407)
Q Consensus 306 -----~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (407)
+..+.-+.+-...|..+.|+++|+++++-+ --+|+|||+++.+..
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~p 314 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNP 314 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCC
Confidence 111111223345688899999999998765 468999999986654
No 272
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.13 E-value=2.6e-08 Score=81.94 Aligned_cols=238 Identities=11% Similarity=0.020 Sum_probs=151.6
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEE-CCCCCeEEEEeCCCeEEEEECCCCceecccccccccc
Q 015438 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL-SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (407)
Q Consensus 136 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 214 (407)
..+||.|+..|...+|...+.+..... ...+...|+-+.= .-....+..++.|.++++.+++.+..........
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~--cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~--- 158 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQ--CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN--- 158 (344)
T ss_pred ccEEEeccccceeeeecccCcccceee--ecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc---
Confidence 457899999999999999865332221 2222221211111 1122346667888888888887654332222111
Q ss_pred ceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC-e-eee-eeeccCCCeEEEEecCCCCCEEEEEeCC
Q 015438 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-K-LSL-RILAHTSDVNTVCFGDESGHLIYSGSDD 291 (407)
Q Consensus 215 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~-~~~-~~~~~~~~v~~i~~s~~~~~~l~s~~~d 291 (407)
-.+.+++++++++++++.+....|..|.+... + .+. ........-.+..|+ .....+|+++.|
T Consensus 159 -------------~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s-~~~~~FAv~~Qd 224 (344)
T KOG4532|consen 159 -------------LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS-ENDLQFAVVFQD 224 (344)
T ss_pred -------------cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec-cCcceEEEEecC
Confidence 13788999999999999999999999988643 2 222 122334445678998 778899999999
Q ss_pred CcEEEEeCcccCCCCcee-eeeccccCCeEEEEecCCCC--EEEEEeCCCcEEEEECCCCCCcccccCC----Ccccccc
Q 015438 292 NLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGDGR--YLISNGKDQAIKLWDIRKMSSNASCNLG----FRSYEWD 364 (407)
Q Consensus 292 ~~i~vwd~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~ 364 (407)
|++.|||+|......... .+-..|.+.+..+.|++-|. +|+..-.-+.+.+-|+|+.+..+.+... .+....+
T Consensus 225 g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ 304 (344)
T KOG4532|consen 225 GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQH 304 (344)
T ss_pred CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccc
Confidence 999999999532111111 12234788999999998653 4555555788999999998776654321 2223334
Q ss_pred ceeeeCCCCCCccCCCCCcceEEEeCCc
Q 015438 365 YRWMDYPPQARDLKHPCDQSVATYKGHS 392 (407)
Q Consensus 365 v~~~~~~~~~~~l~~~~~~~v~~~~gh~ 392 (407)
+..-.|+.++.-+.++....+..|.-.+
T Consensus 305 ifgt~f~~~n~s~~v~~e~~~ae~ni~s 332 (344)
T KOG4532|consen 305 IFGTNFNNENESNDVKNELQGAEYNILS 332 (344)
T ss_pred cccccccCCCcccccccchhhheeeccc
Confidence 5555566666666666666666665554
No 273
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=6.7e-11 Score=111.57 Aligned_cols=216 Identities=19% Similarity=0.189 Sum_probs=154.3
Q ss_pred cccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC--eEEE
Q 015438 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHI 195 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg--~i~v 195 (407)
..+..|+...+|++|+.+.+.|+.|+..|.|++|++.+|.... ....|..+|+-+.-+.+|..+++.+... -..+
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcceeeeeccccCchHHH
Confidence 3677889999999999999999999999999999999984333 4567888999999899999888765433 4678
Q ss_pred EECCC-CceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeee----ccCC
Q 015438 196 VDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL----AHTS 270 (407)
Q Consensus 196 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~ 270 (407)
|++.+ +.....+. .-.++.|+..-..-+.|+....+.+||+.++.++.++. +...
T Consensus 1172 W~~~s~~~~~Hsf~--------------------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD--------------------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred hccccccCcccccc--------------------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence 99864 21111111 35678888765555666666779999999998766532 1222
Q ss_pred CeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 015438 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (407)
Q Consensus 271 ~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (407)
.-++..|+ |+..+++ .|| .+||+| ....+..+......+ .-.|+|+|..++..++ |||+++++.
T Consensus 1232 ~~n~a~Fs-P~D~LIl---ndG--vLWDvR----~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~l 1295 (1516)
T KOG1832|consen 1232 SNNLAHFS-PCDTLIL---NDG--VLWDVR----IPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKL 1295 (1516)
T ss_pred hccccccC-CCcceEe---eCc--eeeeec----cHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHH
Confidence 33678898 5555553 455 579999 556666665443222 2349999999998875 999999887
Q ss_pred cccccCCCccccccceeeeCCCCCCccC
Q 015438 351 NASCNLGFRSYEWDYRWMDYPPQARDLK 378 (407)
Q Consensus 351 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 378 (407)
+.. ....+-..+.|+..|.++.
T Consensus 1296 Lh~------VP~Ldqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1296 LHS------VPSLDQCAVTFNSTGDVMY 1317 (1516)
T ss_pred Hhc------CccccceEEEeccCccchh
Confidence 643 3445556677877776654
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.11 E-value=1.4e-07 Score=84.05 Aligned_cols=227 Identities=12% Similarity=0.067 Sum_probs=145.1
Q ss_pred CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeC----------CCeEEEEECCCCceeccccccccccc
Q 015438 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----------SPIVHIVDVGSGTMESLANVTEIHDG 215 (407)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~ 215 (407)
+.|.+.|..+.+.+..+..... ...+ +|||++.|+++.. +..|.+||+.+.+....+.+......
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~----P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL----PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC----Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 8899999999866655443332 2224 8999999887755 78999999999987665544321110
Q ss_pred eeeeecCCCCccccEEEEEEeCCCCEEEEee-C-CCeEEEEEcCCCeeeeeeeccC------------------C-----
Q 015438 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-S-DDCIYVYDLEANKLSLRILAHT------------------S----- 270 (407)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~------------------~----- 270 (407)
. .......++++|||++|++.. . +..|.+.|+.+++.+..+.... +
T Consensus 102 ~---------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v 172 (352)
T TIGR02658 102 L---------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKV 172 (352)
T ss_pred h---------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEE
Confidence 0 001234688999999888766 3 6889999999887765442110 0
Q ss_pred --------CeEEE--------------EecCCCCCEEEEEeCCCcEEEEeCcccCC-CCceeeeec-------cccCCeE
Q 015438 271 --------DVNTV--------------CFGDESGHLIYSGSDDNLCKVWDRRCLNV-KGKPAGVLM-------GHLEGIT 320 (407)
Q Consensus 271 --------~v~~i--------------~~s~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~-------~~~~~i~ 320 (407)
.+... .|.+.++.++..... |.|.+.|+..... ...+...+. -..+.+.
T Consensus 173 ~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q 251 (352)
T TIGR02658 173 GYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ 251 (352)
T ss_pred EecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcce
Confidence 01111 112236666666555 9999999642110 122222221 1234455
Q ss_pred EEEecCCCCEEEEEe----------CCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCC-ccCCC--CCcceEE
Q 015438 321 FIDSRGDGRYLISNG----------KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR-DLKHP--CDQSVAT 387 (407)
Q Consensus 321 ~~~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~--~~~~v~~ 387 (407)
-++++|+++.++... ..+.|.++|..+.+.+..+.. ......+.++||++ +|.+. .++.|.+
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-----G~~~~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-----GHEIDSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-----CCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence 699999999888743 225799999999888776533 23556788999999 55543 4677889
Q ss_pred EeCCc
Q 015438 388 YKGHS 392 (407)
Q Consensus 388 ~~gh~ 392 (407)
++..+
T Consensus 327 iD~~t 331 (352)
T TIGR02658 327 FDAET 331 (352)
T ss_pred EECcC
Confidence 98654
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=7.1e-08 Score=99.24 Aligned_cols=215 Identities=15% Similarity=0.171 Sum_probs=135.9
Q ss_pred ceEEEEECCCCCEEEEEe-CCCeEEEEEcCCCeEEeEeeec-------cc-------cceEEEEEEECC-CCCeEEEEeC
Q 015438 126 RAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILA-------KS-------LRWTVTDTSLSP-DQRHLVYASM 189 (407)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~-------~~~~v~~~~~sp-~~~~l~~~~~ 189 (407)
....+++++++..|+++. ..+.|+++|+.++. +..+... .+ .-.....++++| ++..+++.+.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 457899999888665554 45679999987763 2221110 00 011246789999 5566666677
Q ss_pred CCeEEEEECCCCceeccccccccccceeeeec-CCCCccccEEEEEEeCCCCEE-EEeeCCCeEEEEEcCCCeeeeeee-
Q 015438 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAA-DDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRIL- 266 (407)
Q Consensus 190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~- 266 (407)
++.|++||..++........ ... ...... .....-.....|+++|+++.| ++-+.++.|++||+.++.......
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~-G~~--~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg 780 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGD-GYE--RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG 780 (1057)
T ss_pred CCeEEEEECCCCeEEEEecC-Ccc--ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence 88999999987654221100 000 000000 000011245679999999854 455667899999998765321110
Q ss_pred ------------cc--------CCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeecc------------
Q 015438 267 ------------AH--------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG------------ 314 (407)
Q Consensus 267 ------------~~--------~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~------------ 314 (407)
.. -.....++++ ++|+++++-+.++.|++||.. .+... .+.+
T Consensus 781 ~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd-~dG~LYVADs~N~rIrviD~~----tg~v~-tiaG~G~~G~~dG~~~ 854 (1057)
T PLN02919 781 DPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA-KDGQIYVADSYNHKIKKLDPA----TKRVT-TLAGTGKAGFKDGKAL 854 (1057)
T ss_pred ccccCcccccccCCCCchhhhhccCCceeeEe-CCCcEEEEECCCCEEEEEECC----CCeEE-EEeccCCcCCCCCccc
Confidence 00 1123578887 788888888899999999986 33322 2221
Q ss_pred --ccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 015438 315 --HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (407)
Q Consensus 315 --~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (407)
.......++++++|+.+++-+.++.|++||+++.+.
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 223567899999999999999999999999998764
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.08 E-value=4.3e-08 Score=86.88 Aligned_cols=175 Identities=18% Similarity=0.148 Sum_probs=132.7
Q ss_pred ECC-CCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC-eEEEEECCCCceeccccc
Q 015438 132 FSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-IVHIVDVGSGTMESLANV 209 (407)
Q Consensus 132 ~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~ 209 (407)
|++ +|.+++..+. |...|.+...+..++ .++...|.-..+..+++-++.|..|| .+-|+|..+++......
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-----v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~- 399 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-----VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK- 399 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE-----cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-
Confidence 444 6888888876 778888876663332 23444588888888888999999999 89999999887654432
Q ss_pred cccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEe
Q 015438 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289 (407)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~ 289 (407)
.-+.|.++..+++|++++++.....+.+.|+.++.....-+...+-|+.+.|| ++++++|-+-
T Consensus 400 ----------------~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~-~nsr~iAYaf 462 (668)
T COG4946 400 ----------------DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWH-PNSRWIAYAF 462 (668)
T ss_pred ----------------CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEc-CCceeEEEec
Confidence 22379999999999999999999999999999998765555667789999998 8899998876
Q ss_pred CCC----cEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEe
Q 015438 290 DDN----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (407)
Q Consensus 290 ~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 335 (407)
-+| .|+++|+. .++. .......+.=.+-+|.||+++|.--+
T Consensus 463 P~gy~tq~Iklydm~----~~Ki-y~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 463 PEGYYTQSIKLYDMD----GGKI-YDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CcceeeeeEEEEecC----CCeE-EEecCCcccccCcccCCCCcEEEEEe
Confidence 665 69999996 4443 33333333345678999999876543
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=2.5e-10 Score=102.51 Aligned_cols=211 Identities=11% Similarity=0.159 Sum_probs=150.9
Q ss_pred cccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCC-e---EEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeE
Q 015438 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-W---KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i 193 (407)
..+.+|...|..++--.+.+-+++++.|.+|++|.+... . ..........|..+|.++.|-.+.++++++ ||-|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 345689999999887777888999999999999998642 1 122445677899999999999888888764 7889
Q ss_pred EEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEE-eeCCCeEEEEEcCCCeeeeeee-----c
Q 015438 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRIL-----A 267 (407)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~-----~ 267 (407)
++||.--+.......... ..+..+.|.|+. +-+...++. ++...+|+++|.+..+-...++ +
T Consensus 807 HlWDPFigr~Laq~~dap-----------k~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~ 874 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAP-----------KEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG 874 (1034)
T ss_pred eeecccccchhHhhhcCc-----------ccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence 999987665433221111 111222343332 113344444 4778899999999887666554 3
Q ss_pred cCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEE-EECC
Q 015438 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL-WDIR 346 (407)
Q Consensus 268 ~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~i-wd~~ 346 (407)
..+-+.++++. +.|+.++.+-..|.|.+.|.| +++.+..++.-.-....++ .|..+.|+....|.++.+ |.--
T Consensus 875 Pna~~R~iaVa-~~GN~lAa~LSnGci~~LDaR----~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 875 PNALTRAIAVA-DKGNKLAAALSNGCIAILDAR----NGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred CchheeEEEec-cCcchhhHHhcCCcEEEEecC----CCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhc
Confidence 34568899997 889999999999999999999 8888887775554444444 456677888888888888 8755
Q ss_pred CC
Q 015438 347 KM 348 (407)
Q Consensus 347 ~~ 348 (407)
.+
T Consensus 949 dg 950 (1034)
T KOG4190|consen 949 DG 950 (1034)
T ss_pred CC
Confidence 43
No 278
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.06 E-value=8.5e-08 Score=85.76 Aligned_cols=264 Identities=14% Similarity=0.158 Sum_probs=159.3
Q ss_pred CCCceEEEEECCCCCEEEEEeCC---------------CeEEEEEcCCCeEEeEeeecccc--ceEEEEEEECCCCCeEE
Q 015438 123 TTSRAYVSQFSADGSLFVAGFQA---------------SQIRIYDVERGWKIQKDILAKSL--RWTVTDTSLSPDQRHLV 185 (407)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~ 185 (407)
....|..+.|||++++|.+=+.. +.+.+||..++..+......... .++ -+.|+-+.+++|
T Consensus 70 ~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp--~~k~s~~D~y~A 147 (561)
T COG5354 70 RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWP--VLKFSIDDKYVA 147 (561)
T ss_pred ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccc--eeeeeecchhhh
Confidence 35679999999999999985432 35999999998655543332222 222 478888888777
Q ss_pred EEeCCCeEEEEECCCCceecc-ccccccccceeeeecCCCCcc----------------------------------ccE
Q 015438 186 YASMSPIVHIVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYS----------------------------------FGI 230 (407)
Q Consensus 186 ~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------------------------------~~v 230 (407)
-. -...++|+++ ++..... +.......-.+|...+.+.|. ..=
T Consensus 148 Rv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~ 225 (561)
T COG5354 148 RV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSG 225 (561)
T ss_pred hh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecc
Confidence 55 2346888886 3222110 110011111122222221110 011
Q ss_pred EEEEEeCCCCEEEEeeC-----------CCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEE--eCCCcEEEE
Q 015438 231 FSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG--SDDNLCKVW 297 (407)
Q Consensus 231 ~~~~~s~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~--~~d~~i~vw 297 (407)
..+.|++.|++|++-.. ...++++++....+.... .-.++|...+|.| .++.+++. -.+..+.++
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~ 303 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEP-LSSRFAVISGYMPASVSVF 303 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecc-cCCceeEEecccccceeec
Confidence 35778888987665311 245888888754443332 5588999999984 44444443 467899999
Q ss_pred eCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeC---CCcEEEEECCCCCCcccccCCCccccccceeeeCCCCC
Q 015438 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK---DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (407)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 374 (407)
|++ +..... .....-..+.|+|.+++++.++- .|.|-+||......... .-.....+...|+|++
T Consensus 304 ~lr-----~Nl~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~-----~~~~~n~s~~~wspd~ 371 (561)
T COG5354 304 DLR-----GNLRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAG-----AFNGLNTSYCDWSPDG 371 (561)
T ss_pred ccc-----cceEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEE-----EeecCCceEeeccCCc
Confidence 996 443333 34455567889999999999875 46799999876443321 1223344567789999
Q ss_pred CccCCC-------CCcceEEEeCCcc-ceeeEEEeeCC
Q 015438 375 RDLKHP-------CDQSVATYKGHSV-LRTLIRCHFSP 404 (407)
Q Consensus 375 ~~l~~~-------~~~~v~~~~gh~~-~~~~~~~~fsp 404 (407)
.++... -|..+.+|+-.+- .--+..+.|-|
T Consensus 372 qF~~~~~ts~k~~~Dn~i~l~~v~g~~~fel~~~~W~p 409 (561)
T COG5354 372 QFYDTDTTSEKLRVDNSIKLWDVYGAKVFELTNITWDP 409 (561)
T ss_pred eEEEecCCCcccccCcceEEEEecCchhhhhhhccccC
Confidence 877653 2678888874321 11244455554
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=1.2e-08 Score=94.63 Aligned_cols=236 Identities=8% Similarity=0.044 Sum_probs=160.7
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeE------------EeEeeeccccceEEEEEEECCCCCeEEEEeCCC
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK------------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 191 (407)
+....|+.|+.+..++|+|+.||.+++..+.+... +.......+|...|.-+.|+.+.+.|-++..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 45678999999999999999999999998865311 111234578999999999999999999999999
Q ss_pred eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCC
Q 015438 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (407)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 271 (407)
-|.||-+-.+....... .+....-|.+++|+.+|..|+..-.||.|.+=.+...+...+ .-....
T Consensus 94 lIiVWmlykgsW~EEMi--------------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK-eLkg~~ 158 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMI--------------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK-ELKGQL 158 (1189)
T ss_pred eEEEEeeecccHHHHHh--------------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch-hcchhe
Confidence 99999987776432221 112344689999999999999999999998888775443211 111223
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCccc---CCCCceeeee----ccccCCeEEEEe--------cCCCCEEEEEeC
Q 015438 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCL---NVKGKPAGVL----MGHLEGITFIDS--------RGDGRYLISNGK 336 (407)
Q Consensus 272 v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~----~~~~~~i~~~~~--------s~~~~~l~s~~~ 336 (407)
...+.|+ ++...++.+-..|.+.+||.... +....+.... ......|..+.| -||...|+.+-.
T Consensus 159 l~hv~ws-~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~ 237 (1189)
T KOG2041|consen 159 LAHVLWS-EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA 237 (1189)
T ss_pred ccceeec-ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc
Confidence 4578998 67777777888899999997411 0011111111 111223555555 347788999999
Q ss_pred CCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCC
Q 015438 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380 (407)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 380 (407)
.|.+.|-.-.+...+..+.. ...+....++++|.+|++.
T Consensus 238 nGr~QiMR~eND~~Pvv~dt-----gm~~vgakWnh~G~vLAvc 276 (1189)
T KOG2041|consen 238 NGRMQIMRSENDPEPVVVDT-----GMKIVGAKWNHNGAVLAVC 276 (1189)
T ss_pred CceehhhhhcCCCCCeEEec-----ccEeecceecCCCcEEEEc
Confidence 99988876555444433322 2333445567888777754
No 280
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=1.3e-07 Score=85.41 Aligned_cols=259 Identities=12% Similarity=0.085 Sum_probs=160.1
Q ss_pred CceEEEEECCCCCEEEEEeC-----------CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeE
Q 015438 125 SRAYVSQFSADGSLFVAGFQ-----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (407)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i 193 (407)
-.|.-+.|||+.+||++=+. ...+.|||+.+|...............-.-+.||.|++++|--.. ..|
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~si 328 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSI 328 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceE
Confidence 46888999999999998543 257999999999655544432222111233789999999997666 568
Q ss_pred EEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC-----CeEEEEEcCCCeeeeeeecc
Q 015438 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILAH 268 (407)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~ 268 (407)
.||+..+-.+.....+. -..|....|+|.+++||.-+.. ..+.+..+.+++.+++-..+
T Consensus 329 sIyEtpsf~lld~Kslk----------------i~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf 392 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLK----------------ISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF 392 (698)
T ss_pred EEEecCceeeecccccC----------------CccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccce
Confidence 89987764332222111 1268889999999988875432 35777777777766655444
Q ss_pred CCCeEEEEecCCCCCEEEEEe----------CCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeC--
Q 015438 269 TSDVNTVCFGDESGHLIYSGS----------DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-- 336 (407)
Q Consensus 269 ~~~v~~i~~s~~~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-- 336 (407)
.-.=..+-|- .+|.+|+.-- .--.+-|+.++. ..-++..+ .....|...+|-|.|..+++-+.
T Consensus 393 nVsDckLhWQ-k~gdyLcvkvdR~tK~~~~g~f~n~eIfrire---KdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~ 467 (698)
T KOG2314|consen 393 NVSDCKLHWQ-KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE---KDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNT 467 (698)
T ss_pred eeeccEEEec-cCCcEEEEEEEeeccccccceEeeEEEEEeec---cCCCceee-ecchheeeeeeccCCCeEEEEEccc
Confidence 4333445663 6677765421 112356666662 22233333 35678899999999988876553
Q ss_pred -CCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCC----CcceEEEeCC---------ccceeeEEEee
Q 015438 337 -DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC----DQSVATYKGH---------SVLRTLIRCHF 402 (407)
Q Consensus 337 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~~v~~~~gh---------~~~~~~~~~~f 402 (407)
..++.+|.+.+......+...... ...+.+.++|.|++++++. .+.+.-|+-. ..+-....+.|
T Consensus 468 ~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veW 545 (698)
T KOG2314|consen 468 VKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEW 545 (698)
T ss_pred cccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceE
Confidence 467999998852222222111111 3345678899999987643 4455555432 22233456677
Q ss_pred CCCCC
Q 015438 403 SPVYR 407 (407)
Q Consensus 403 sp~~~ 407 (407)
.|-+|
T Consensus 546 DPtGR 550 (698)
T KOG2314|consen 546 DPTGR 550 (698)
T ss_pred CCCCC
Confidence 77665
No 281
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.02 E-value=9.3e-10 Score=102.10 Aligned_cols=221 Identities=20% Similarity=0.275 Sum_probs=153.9
Q ss_pred ccCCCCcccccC-CCceEEEEECCCC--CEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCC-CeEEEE
Q 015438 112 LPVNGPWPVDQT-TSRAYVSQFSADG--SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYA 187 (407)
Q Consensus 112 ~~~~~~~~~~~h-~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~ 187 (407)
.|...+.-+... .-.|-.+.|+|.. .+-++......-.||++.....-.......+|...|+++.|+|.. ..++++
T Consensus 54 ~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatc 133 (1081)
T KOG0309|consen 54 DPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATC 133 (1081)
T ss_pred CCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeec
Confidence 344444433322 3356677888753 333444344556789886543333445567888899999999964 578889
Q ss_pred eCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC-eeeeeee
Q 015438 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRIL 266 (407)
Q Consensus 188 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~ 266 (407)
+-|..+..||+++....-.. ... -......++|+.....+.+.+....|.+||++.+ .++..++
T Consensus 134 svdt~vh~wd~rSp~~p~ys-~~~--------------w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K 198 (1081)
T KOG0309|consen 134 SVDTYVHAWDMRSPHRPFYS-TSS--------------WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK 198 (1081)
T ss_pred cccccceeeeccCCCcceee-eec--------------ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEec
Confidence 99999999999876432111 000 1124567899985555666667788999999876 4777888
Q ss_pred ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccC-------------------------------------------
Q 015438 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN------------------------------------------- 303 (407)
Q Consensus 267 ~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~------------------------------------------- 303 (407)
+|...|+.+.|+......+.+++.|++|++||.....
T Consensus 199 ~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n 278 (1081)
T KOG0309|consen 199 GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCEN 278 (1081)
T ss_pred ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccc
Confidence 8999999999986666778899999999999975110
Q ss_pred --------CCCceeeeeccccCCeEEEEecCC----------CCEEEEEeCCCcEEEEECCC
Q 015438 304 --------VKGKPAGVLMGHLEGITFIDSRGD----------GRYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 304 --------~~~~~~~~~~~~~~~i~~~~~s~~----------~~~l~s~~~dg~i~iwd~~~ 347 (407)
....++..+.||...|....|... .-.|+|=+.|..+++|-+.+
T Consensus 279 ~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 279 SDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 124577788888887776666432 23699999999999999875
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=4.3e-07 Score=93.57 Aligned_cols=256 Identities=12% Similarity=0.099 Sum_probs=152.4
Q ss_pred EEEEECCC-CCEEEEEeCCCeEEEEEcCCCeEEeEeee-cc----------ccceEEEEEEECCCCCeEEEEe-CCCeEE
Q 015438 128 YVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDIL-AK----------SLRWTVTDTSLSPDQRHLVYAS-MSPIVH 194 (407)
Q Consensus 128 ~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~----------~~~~~v~~~~~sp~~~~l~~~~-~dg~i~ 194 (407)
..++++++ +..+++-...+.|.+||.... .+..... .. ..-.....+++.++++.|+++. ....|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 667777777889999998654 2222111 00 0111357789999888666654 457899
Q ss_pred EEECCCCceeccccccccccceeeeecCCC--CccccEEEEEEeC-CCCEEEEeeCCCeEEEEEcCCCeeeeeeec----
Q 015438 195 IVDVGSGTMESLANVTEIHDGLDFSAADDG--GYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILA---- 267 (407)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---- 267 (407)
++|..++....+.... ..+..+...... ..-.....++++| ++.++++.+.++.|++||..++... .+.+
T Consensus 650 ~id~~~~~V~tlag~G--~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNETVRTLAGNG--TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEecCCCEEEEEeccC--cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 9998776543221100 000000000000 0011245799999 5556666777889999999876542 2211
Q ss_pred -----------cCCCeEEEEecCCCCC-EEEEEeCCCcEEEEeCcccCCCCceeee-------------ec--------c
Q 015438 268 -----------HTSDVNTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGV-------------LM--------G 314 (407)
Q Consensus 268 -----------~~~~v~~i~~s~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~-------------~~--------~ 314 (407)
.-.....|+++ ++++ ++++-+.++.|++||+. .+..... +- .
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~----tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLK----TGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred ccCCCCccccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECC----CCcEEEEEecccccCcccccccCCCCchhhh
Confidence 01234578998 5555 66666778999999986 3221100 00 0
Q ss_pred ccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCC---------ccccccceeeeCCCCCCccCC-CCCcc
Q 015438 315 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF---------RSYEWDYRWMDYPPQARDLKH-PCDQS 384 (407)
Q Consensus 315 ~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~-~~~~~ 384 (407)
.......++++++|+.+++-+.++.|++||..++......-.+. ...-.....++++++|+++.+ ..++.
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~ 881 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL 881 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence 11134688999999988888999999999998765432111100 011123567888899886554 45688
Q ss_pred eEEEeCCc
Q 015438 385 VATYKGHS 392 (407)
Q Consensus 385 v~~~~gh~ 392 (407)
|++|+-.+
T Consensus 882 Irvid~~~ 889 (1057)
T PLN02919 882 IRYLDLNK 889 (1057)
T ss_pred EEEEECCC
Confidence 89998655
No 283
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.01 E-value=3.5e-09 Score=86.57 Aligned_cols=168 Identities=8% Similarity=0.092 Sum_probs=109.2
Q ss_pred CCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEe-----C
Q 015438 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-----M 189 (407)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-----~ 189 (407)
.+.+++..|.++-.+-+.+--++.++++..||.+.+++.+.-..+...+ ...|.+ -.+.+....++.+.++. .
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i-~~~~~~-~as~~~~~~~~~i~s~~~g~~n~ 157 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRI-PSIHSG-SASRKICRHGNSILSGGCGNWNA 157 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhc-cccccc-ccccceeecccEEecCCcceEee
Confidence 4455566666666666667677889999999999999987631111111 111111 11122223344444432 2
Q ss_pred CCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-CEEEEeeCCCeEEEEEcCCCe-eeeeeec
Q 015438 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANK-LSLRILA 267 (407)
Q Consensus 190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~ 267 (407)
-+..+.|+++..+....... .-..|.+++-+|.. +.+++|+.||.+-+||.+... +...+..
T Consensus 158 ~d~~~a~~~~p~~t~~~~~~----------------~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a 221 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPSKK----------------ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA 221 (319)
T ss_pred ccceeeeccccccccccccc----------------ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH
Confidence 23455565543322111110 01148889989854 577889999999999998774 3445678
Q ss_pred cCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCc
Q 015438 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (407)
Q Consensus 268 ~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~ 300 (407)
|+.++..+-|+|.++..|++++.||.+-.||..
T Consensus 222 hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 222 HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred hhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 999999999999999999999999999999985
No 284
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.97 E-value=4.1e-07 Score=92.08 Aligned_cols=241 Identities=12% Similarity=0.110 Sum_probs=156.4
Q ss_pred CceEEEEECCCCCEEEEEeCCC----eEEEEEcCCCeEEeEeeec-----cccceEEEEEEECCCCCeEEEEeCCCeEEE
Q 015438 125 SRAYVSQFSADGSLFVAGFQAS----QIRIYDVERGWKIQKDILA-----KSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (407)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~~~dg~i~v 195 (407)
..+...+|.+..+.+..+.... .|.+-.............. ......|.++.+-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 4567777877665544433322 2334333322211111111 123457999999999999999999999999
Q ss_pred E----ECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeee---------
Q 015438 196 V----DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS--------- 262 (407)
Q Consensus 196 w----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~--------- 262 (407)
. +.........-.+ ..+|.+++||||+..|+..+.++++.+.+-. ..++
T Consensus 102 ~~~~~~~~~~~~E~VG~v-----------------d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~ 163 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSV-----------------DSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDD 163 (928)
T ss_pred EEccCCCCCceeEEEEEE-----------------cCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccc
Confidence 9 5554443332221 1279999999999999999999988776421 1111
Q ss_pred ---------------eeeec------------------------cCCCeEEEEecCCCCCEEEEEeC---C---CcEEEE
Q 015438 263 ---------------LRILA------------------------HTSDVNTVCFGDESGHLIYSGSD---D---NLCKVW 297 (407)
Q Consensus 263 ---------------~~~~~------------------------~~~~v~~i~~s~~~~~~l~s~~~---d---~~i~vw 297 (407)
..|.+ ....-..|+|- .||.++|+.+. . ..+|||
T Consensus 164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWR-GDG~yFAVss~~~~~~~~R~iRVy 242 (928)
T PF04762_consen 164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWR-GDGEYFAVSSVEPETGSRRVIRVY 242 (928)
T ss_pred cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEEC-CCCcEEEEEEEEcCCCceeEEEEE
Confidence 01100 22244678995 99999998875 2 579999
Q ss_pred eCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeC---CCcEEEEECCCCCCcccccCCCccccccceeeeCCCCC
Q 015438 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK---DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (407)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 374 (407)
+. +|....+-..-.+--.+++|.|.|++||+.-. ...|.+|. +++-....+..........+..+.|++++
T Consensus 243 ~R-----eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds 316 (928)
T PF04762_consen 243 SR-----EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDS 316 (928)
T ss_pred CC-----CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCC
Confidence 97 45544433322333357899999999998764 45577777 44444444544444456678999999999
Q ss_pred CccCCCCCcceEEEeC
Q 015438 375 RDLKHPCDQSVATYKG 390 (407)
Q Consensus 375 ~~l~~~~~~~v~~~~g 390 (407)
.+|++...+.|..|.-
T Consensus 317 ~iLAv~~~~~vqLWt~ 332 (928)
T PF04762_consen 317 EILAVWLEDRVQLWTR 332 (928)
T ss_pred CEEEEEecCCceEEEe
Confidence 9999987777999963
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=5.6e-07 Score=83.61 Aligned_cols=177 Identities=14% Similarity=0.113 Sum_probs=110.9
Q ss_pred EEEEEEECCCCCe-EEEEeC---CCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEee
Q 015438 171 TVTDTSLSPDQRH-LVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (407)
Q Consensus 171 ~v~~~~~sp~~~~-l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 246 (407)
......|+||++. ++..+. ...|+++|+.+++...+.... +......|+|||+.|+...
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~-----------------g~~~~~~~SPDG~~la~~~ 251 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ-----------------GMLVVSDVSKDGSKLLLTM 251 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC-----------------CcEEeeEECCCCCEEEEEE
Confidence 5778999999985 665443 357999999888765543211 1345678999998766543
Q ss_pred -C--CCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEe-CCC--cEEEEeCcccCCCCceeeeeccccCCeE
Q 015438 247 -S--DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDN--LCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (407)
Q Consensus 247 -~--dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~-~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~i~ 320 (407)
. +..|+++|+.+++. ..+..+........|+ ++|+.|+..+ ..+ .|.++|+. .+....... ... .
T Consensus 252 ~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~S-PDG~~I~F~Sdr~g~~~Iy~~dl~----~g~~~rlt~-~g~--~ 322 (419)
T PRK04043 252 APKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFV-EDDKRIVFVSDRLGYPNIFMKKLN----SGSVEQVVF-HGK--N 322 (419)
T ss_pred ccCCCcEEEEEECCCCcE-EEcccCCCccCccEEC-CCCCEEEEEECCCCCceEEEEECC----CCCeEeCcc-CCC--c
Confidence 2 35799999987764 4454444434566898 6776665554 334 57777775 444322221 111 1
Q ss_pred EEEecCCCCEEEEEeCC---------CcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCC
Q 015438 321 FIDSRGDGRYLISNGKD---------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (407)
Q Consensus 321 ~~~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 379 (407)
...|+|||++|+..+.. ..|.+.|+.++.... +.. . . ......|+|||+.+..
T Consensus 323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~--~--~-~~~~p~~SPDG~~I~f 384 (419)
T PRK04043 323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTA--N--G-VNQFPRFSSDGGSIMF 384 (419)
T ss_pred CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCC--C--C-CcCCeEECCCCCEEEE
Confidence 24899999998877643 267888887765322 111 1 1 1224678999987754
No 286
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=1e-08 Score=95.03 Aligned_cols=198 Identities=10% Similarity=0.079 Sum_probs=143.7
Q ss_pred CcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEE
Q 015438 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (407)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vw 196 (407)
.+.++||++.|..+.|+.+.+.|-+...+|.|.+|-+-+|...... ......+.|.+++|+.+|..++..-.||.|.|=
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVG 142 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence 4678999999999999999999999999999999999887433322 223345579999999999999999999999888
Q ss_pred ECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC-------eeeee----e
Q 015438 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-------KLSLR----I 265 (407)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~----~ 265 (407)
.++....-. ..+.. .-...+.|++|.+.++.+-.+|.+.+||.... .+... +
T Consensus 143 svdGNRIwg-KeLkg----------------~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~ 205 (1189)
T KOG2041|consen 143 SVDGNRIWG-KELKG----------------QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIF 205 (1189)
T ss_pred eeccceecc-hhcch----------------heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeee
Confidence 776554211 01100 02446889999999999999999999997632 11111 1
Q ss_pred eccCCCeEEEEec-------CCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCC
Q 015438 266 LAHTSDVNTVCFG-------DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (407)
Q Consensus 266 ~~~~~~v~~i~~s-------~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d 337 (407)
......+..+.|. ||+...|+.+-..|.+.+..-.+ ...|+..-. .-.|..+.|+++|..|+.+|.+
T Consensus 206 s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN---D~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 206 SNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN---DPEPVVVDT--GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred cCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC---CCCCeEEec--ccEeecceecCCCcEEEEccCc
Confidence 1122235556663 56778899999999998876541 334443332 3568899999999999999854
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.95 E-value=1.4e-08 Score=83.13 Aligned_cols=149 Identities=20% Similarity=0.354 Sum_probs=100.6
Q ss_pred CCCeEEEEeCCCeEEEEECCCCceecccc-ccccccceeeeecCCCCccccEEEEEEeCCCCEEEEee-----CCCeEEE
Q 015438 180 DQRHLVYASMSPIVHIVDVGSGTMESLAN-VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-----SDDCIYV 253 (407)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~i 253 (407)
.++.++++..||.+.+.+.+.. ..... .... |. .-.+.+....++.+.++. .-+..+.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~--~~~~~~i~~~-------------~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a 163 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKD--LALMSRIPSI-------------HS-GSASRKICRHGNSILSGGCGNWNAQDNFYA 163 (319)
T ss_pred cCCceEecCCCceEEEEechHH--Hhhhhhcccc-------------cc-cccccceeecccEEecCCcceEeeccceee
Confidence 4667999999999999998751 11111 1000 00 111222233344444332 1234667
Q ss_pred EEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecC-CCCEEE
Q 015438 254 YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLI 332 (407)
Q Consensus 254 ~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~ 332 (407)
|+++..+.+..-..-...|.+++-+|...+++++|+.||.+-+||.|.. ..++..+..|..+|..+-|+| ++..|+
T Consensus 164 ~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~---~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 164 NTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV---AMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred ecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccc---cchHHHHHHhhhhhhheeccCCCchhee
Confidence 7766443322211223349999999888889999999999999999943 466677889999999999999 678999
Q ss_pred EEeCCCcEEEEECCC
Q 015438 333 SNGKDQAIKLWDIRK 347 (407)
Q Consensus 333 s~~~dg~i~iwd~~~ 347 (407)
++++||.+..||-.+
T Consensus 241 t~sedGslw~wdas~ 255 (319)
T KOG4714|consen 241 TCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCcEEEEcCCC
Confidence 999999999999775
No 288
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.3e-07 Score=85.63 Aligned_cols=168 Identities=15% Similarity=0.169 Sum_probs=115.3
Q ss_pred EEEEECCCCCEEE-EEe--CC---------CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEE--EeCCCeE
Q 015438 128 YVSQFSADGSLFV-AGF--QA---------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY--ASMSPIV 193 (407)
Q Consensus 128 ~~~~~s~~~~~l~-~~~--~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~~dg~i 193 (407)
-.+.|++-|.-|+ .++ -| ..+++++++ |....... ...++|.++.|+|+++.+++ |-+-..+
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L---~k~GPVhdv~W~~s~~EF~VvyGfMPAkv 296 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPL---LKEGPVHDVTWSPSGREFAVVYGFMPAKV 296 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEec---CCCCCceEEEECCCCCEEEEEEecccceE
Confidence 3567877766322 222 12 368888877 33332222 23458999999999987766 4566789
Q ss_pred EEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC---CCeEEEEEcCCCeeeeeeeccCC
Q 015438 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTS 270 (407)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~ 270 (407)
.|+|++..-.. .+ -.++-+++-|+|.|++|+.++- .|.|-+||+.+.+++..+....
T Consensus 297 tifnlr~~~v~---df----------------~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~- 356 (566)
T KOG2315|consen 297 TIFNLRGKPVF---DF----------------PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN- 356 (566)
T ss_pred EEEcCCCCEeE---eC----------------CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-
Confidence 99998754321 11 1125678999999999888765 4789999999988888876544
Q ss_pred CeEEEEecCCCCCEEEEEeC------CCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCC
Q 015438 271 DVNTVCFGDESGHLIYSGSD------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (407)
Q Consensus 271 ~v~~i~~s~~~~~~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 327 (407)
-+-+.|+ ++|.+|+|++. |+.++||+. +|..+....-.. ....+.|-|-
T Consensus 357 -tt~~eW~-PdGe~flTATTaPRlrvdNg~Kiwhy-----tG~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 357 -TTVFEWS-PDGEYFLTATTAPRLRVDNGIKIWHY-----TGSLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred -ceEEEEc-CCCcEEEEEeccccEEecCCeEEEEe-----cCceeehhhhhH-hHhheeeeec
Confidence 4557998 88999988874 788999998 566665432111 4677788763
No 289
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.89 E-value=5.9e-07 Score=90.92 Aligned_cols=214 Identities=18% Similarity=0.209 Sum_probs=139.5
Q ss_pred cCCCceEEEEECCCCCEEEEEeCCCeEEEE----EcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEE
Q 015438 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIY----DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (407)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd 197 (407)
...+.|.++.|-++...++.+..+|.|.++ +..... +.. ...-...|.+++||||+..|+..+.++++.+..
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~---VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEI---VGSVDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEE---EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 446789999999999999999999999999 554431 111 112233599999999999999999999888864
Q ss_pred CCCCceeccccccccccc----e-------eeeecC------------------CCC---ccccEEEEEEeCCCCEEEEe
Q 015438 198 VGSGTMESLANVTEIHDG----L-------DFSAAD------------------DGG---YSFGIFSLKFSTDGRELVAG 245 (407)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~----~-------~~~~~~------------------~~~---~~~~v~~~~~s~~~~~l~~~ 245 (407)
-. ...+....+....-+ + ..+.++ +.+ ....-..++|-.||.++|+.
T Consensus 149 ~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 149 RD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred cc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 22 111100000000000 0 000000 000 22245679999999999988
Q ss_pred eC---C---CeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeC---CCcEEEEeCcccCCCCceeeeec---
Q 015438 246 SS---D---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKPAGVLM--- 313 (407)
Q Consensus 246 ~~---d---g~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~--- 313 (407)
+- . ..++||+-+ |.....-..-.+--.+++|. |.|++||+.-. ...|.+|... |-....+.
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErN-----GLrhgeF~l~~ 300 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERN-----GLRHGEFTLRF 300 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecC-----CcEeeeEecCC
Confidence 74 2 579999966 66544444334444678996 89999988764 3467777653 33333322
Q ss_pred -cccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 015438 314 -GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (407)
Q Consensus 314 -~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 348 (407)
.....|..++|++|+..||..-.|. |.+|-..+.
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 3456789999999999999977655 999998764
No 290
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.89 E-value=3.3e-06 Score=72.88 Aligned_cols=206 Identities=15% Similarity=0.140 Sum_probs=131.0
Q ss_pred CceEEEEECC-CCCEEEEEeCCC-eEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEe-----CCCeEEEEE
Q 015438 125 SRAYVSQFSA-DGSLFVAGFQAS-QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-----MSPIVHIVD 197 (407)
Q Consensus 125 ~~v~~~~~s~-~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-----~dg~i~vwd 197 (407)
.....++.+| .+..++.+-.-| ...+||..++..........+. .--=--.||+||++|++.- ..|.|-|||
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR-HFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR-HFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC-EEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 3455788899 455566666555 4788999998666544322211 1112257999999999863 357999999
Q ss_pred CCC-CceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC------------------CCeEEEEEcCC
Q 015438 198 VGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------------------DDCIYVYDLEA 258 (407)
Q Consensus 198 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------------dg~i~i~d~~~ 258 (407)
... -..+..+. . +.-.-..+.+.|||+.|+++.. +..+...|..+
T Consensus 84 ~~~~~~ri~E~~-----------s-----~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 84 AARGYRRIGEFP-----------S-----HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred CcCCcEEEeEec-----------C-----CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 982 22222111 1 1123445789999987777631 12466677888
Q ss_pred Ceeeee--e--eccCCCeEEEEecCCCCCEEEEEeCCCc-------EEEEeCcccCCCCceeeee-------ccccCCeE
Q 015438 259 NKLSLR--I--LAHTSDVNTVCFGDESGHLIYSGSDDNL-------CKVWDRRCLNVKGKPAGVL-------MGHLEGIT 320 (407)
Q Consensus 259 ~~~~~~--~--~~~~~~v~~i~~s~~~~~~l~s~~~d~~-------i~vwd~~~~~~~~~~~~~~-------~~~~~~i~ 320 (407)
++.+.+ + ..|...+..+++. .+|..++..-..|. |-+++.. ..+..+ ..-...|-
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~-~~G~V~~a~Q~qg~~~~~~PLva~~~~g------~~~~~~~~p~~~~~~l~~Y~g 220 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVD-GDGTVAFAMQYQGDPGDAPPLVALHRRG------GALRLLPAPEEQWRRLNGYIG 220 (305)
T ss_pred CceeeeeecCccccccceeeEEec-CCCcEEEEEecCCCCCccCCeEEEEcCC------CcceeccCChHHHHhhCCceE
Confidence 887766 3 2377789999997 77766555443332 3344332 222222 22346789
Q ss_pred EEEecCCCCEEEEEe-CCCcEEEEECCCCCCcccc
Q 015438 321 FIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 321 ~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 354 (407)
+|++++++.++++.+ ..+.+.+||..+++.+...
T Consensus 221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 221 SIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred EEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 999999998775555 7889999999998876544
No 291
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.88 E-value=3.2e-06 Score=73.19 Aligned_cols=215 Identities=17% Similarity=0.129 Sum_probs=133.8
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEEC-CCCCeEEEEeCCCeEEEEECCCCceecc
Q 015438 129 VSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS-PDQRHLVYASMSPIVHIVDVGSGTMESL 206 (407)
Q Consensus 129 ~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~dg~i~vwd~~~~~~~~~ 206 (407)
++.|.+ ++.++++-...+.|..|+..++.... ..... ...+.+. +++. |+++...+ +.++|..+++...+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~~----~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLPG----PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESSS----EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecCC----CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEE
Confidence 578998 67777777778999999998874322 12222 5566776 5654 55555544 55669988866554
Q ss_pred ccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC--------CeEEEEEcCCCeeeeeeeccCCCeEEEEec
Q 015438 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (407)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~i~~s 278 (407)
...... .......+.+++.|+|++.++.... |.|+.++.. ++..... ..-...+.|+|+
T Consensus 76 ~~~~~~-----------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s 142 (246)
T PF08450_consen 76 ADLPDG-----------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFS 142 (246)
T ss_dssp EEEETT-----------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEE
T ss_pred eeccCC-----------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEEC
Confidence 443210 0022368899999999966665433 568888887 5543333 345567899998
Q ss_pred CCCCCEE-EEEeCCCcEEEEeCcccCCCC---ceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccc
Q 015438 279 DESGHLI-YSGSDDNLCKVWDRRCLNVKG---KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 279 ~~~~~~l-~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (407)
++++.| ++-+..+.|..|++....... ..+..+....+..-.+++..+|++.++....+.|.++|.+ ++.+..+
T Consensus 143 -~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 143 -PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred -CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence 667655 566778899999986221101 1112222222347789999999988888889999999987 6654443
Q ss_pred cCCCccccccceeeeC
Q 015438 355 NLGFRSYEWDYRWMDY 370 (407)
Q Consensus 355 ~~~~~~~~~~v~~~~~ 370 (407)
... ...++.++|
T Consensus 221 ~~p----~~~~t~~~f 232 (246)
T PF08450_consen 221 ELP----VPRPTNCAF 232 (246)
T ss_dssp E-S----SSSEEEEEE
T ss_pred cCC----CCCEEEEEE
Confidence 221 224555555
No 292
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.85 E-value=9.9e-09 Score=60.64 Aligned_cols=38 Identities=34% Similarity=0.576 Sum_probs=36.4
Q ss_pred ceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEE
Q 015438 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (407)
Q Consensus 307 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd 344 (407)
+++..+.+|...|++++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999998
No 293
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=1.7e-08 Score=90.99 Aligned_cols=221 Identities=16% Similarity=0.127 Sum_probs=152.5
Q ss_pred ccccceeeeeccC-------CCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeecccc--ceEE
Q 015438 102 ADCCHMLSRYLPV-------NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL--RWTV 172 (407)
Q Consensus 102 ~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~v 172 (407)
.|....+|.+-|. ...++...|+.+|..+.|-.+-++++++ ||.|++||.--+..+........+ .+.|
T Consensus 755 kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~i 832 (1034)
T KOG4190|consen 755 KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNI 832 (1034)
T ss_pred CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCcee
Confidence 4455567766543 2456788999999999999999888765 789999998776554433222222 2334
Q ss_pred EEEEECCCCCeEEEE-eCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeE
Q 015438 173 TDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251 (407)
Q Consensus 173 ~~~~~sp~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 251 (407)
.++. +-+...++++ +...+|+++|.+..+.....++. ...+...-+.+++..+.|+.++++-.+|+|
T Consensus 833 kcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc-----------na~~Pna~~R~iaVa~~GN~lAa~LSnGci 900 (1034)
T KOG4190|consen 833 KCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVC-----------NAPGPNALTRAIAVADKGNKLAAALSNGCI 900 (1034)
T ss_pred Eecc-cCcchheeeeccchhhheeeecccccceeeEEec-----------cCCCCchheeEEEeccCcchhhHHhcCCcE
Confidence 4432 2244445554 77889999999987765444332 122344578999999999999999999999
Q ss_pred EEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEE-EeCcccCCCCceeeeeccccCCeEEEEecCCCCE
Q 015438 252 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV-WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (407)
Q Consensus 252 ~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~v-wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 330 (407)
.+.|.++|+.+..++........++- +..+.++....|.++.+ |..- .+...........+...+. .-|..
T Consensus 901 ~~LDaR~G~vINswrpmecdllqlaa--psdq~L~~saldHslaVnWhal----dgimh~q~kpppepahflq--svgpS 972 (1034)
T KOG4190|consen 901 AILDARNGKVINSWRPMECDLLQLAA--PSDQALAQSALDHSLAVNWHAL----DGIMHLQDKPPPEPAHFLQ--SVGPS 972 (1034)
T ss_pred EEEecCCCceeccCCcccchhhhhcC--chhHHHHhhcccceeEeeehhc----CCeeeeccCCCCcchhhhh--ccCce
Confidence 99999999999888766666666655 66778888888999988 8765 4444444443333332222 24666
Q ss_pred EEEEeCCCcEEEEE
Q 015438 331 LISNGKDQAIKLWD 344 (407)
Q Consensus 331 l~s~~~dg~i~iwd 344 (407)
|+++.....+.+|-
T Consensus 973 LV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 973 LVTAQNGNILGVYA 986 (1034)
T ss_pred eEEeccCcEEEEEe
Confidence 88887777788885
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.82 E-value=2.9e-05 Score=67.20 Aligned_cols=182 Identities=21% Similarity=0.175 Sum_probs=116.1
Q ss_pred eEEEEEC-CCCCEEEEEeCCCeEEEEEcCCCeEEeEeeec-cc-cceEEEEEEECCCCCeEEEEeCC--------CeEEE
Q 015438 127 AYVSQFS-ADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KS-LRWTVTDTSLSPDQRHLVYASMS--------PIVHI 195 (407)
Q Consensus 127 v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~-~~~~v~~~~~sp~~~~l~~~~~d--------g~i~v 195 (407)
...+++. +++.++ .+.. +.+.++|..++......... .. .....+++++.|+|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~-v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLY-VADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEE-EEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEE-EEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6777777 665544 4445 44666698887433222221 12 45578999999999977775543 55777
Q ss_pred EECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEE-EeeCCCeEEEEEcCCCee-------eeeeec
Q 015438 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKL-------SLRILA 267 (407)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~-------~~~~~~ 267 (407)
++.. ++....... -...+.|+|+|+++.|+ +-+..+.|..+++..... ...+..
T Consensus 120 ~~~~-~~~~~~~~~-----------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 181 (246)
T PF08450_consen 120 IDPD-GKVTVVADG-----------------LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG 181 (246)
T ss_dssp EETT-SEEEEEEEE-----------------ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS
T ss_pred ECCC-CeEEEEecC-----------------cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC
Confidence 7776 443222211 11467899999998765 556778899999863221 112222
Q ss_pred cCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEec-CCCCEEEEE
Q 015438 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISN 334 (407)
Q Consensus 268 ~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~s~ 334 (407)
..+....+++. .+|++.++....+.|.++|. .++.+..+.-....+++++|. ++.+.|+..
T Consensus 182 ~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p-----~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 182 GPGYPDGLAVD-SDGNLWVADWGGGRIVVFDP-----DGKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SSCEEEEEEEB-TTS-EEEEEETTTEEEEEET-----TSCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred CCcCCCcceEc-CCCCEEEEEcCCCEEEEECC-----CccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 22347789996 89998888888999999998 577777776555689999994 665555443
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=2.7e-08 Score=84.72 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=112.9
Q ss_pred EEECCC--CCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccc
Q 015438 130 SQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (407)
Q Consensus 130 ~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 207 (407)
++|+-+ |-. ++.+.+..|-+-|+++|-... +. ..+.|.++.|...++++..|..+|.|.++|++.+......
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~qs----f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~ 290 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS----FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW 290 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccccc----cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc
Confidence 356543 223 445567788999998872211 11 3345889999998999999999999999999866221111
Q ss_pred cccccccceeeeecCCCCccccEEEEEEeC-CCCEEEEeeCCCeEEEEEcCCCee---eeeeeccCCCeEEEEec-CCCC
Q 015438 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFG-DESG 282 (407)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~i~~s-~~~~ 282 (407)
..... -|...|+++..-. ++++|++.+.+|+|.+||++.-++ +..+.+|...-.-+-++ .+..
T Consensus 291 ~a~rl------------yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee 358 (425)
T KOG2695|consen 291 CAQRL------------YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE 358 (425)
T ss_pred ceEEE------------EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc
Confidence 11100 1555788887776 778899999999999999998777 77777776543333221 1445
Q ss_pred CEEEEEeCCCcEEEEeCcccCCCCceeeeec
Q 015438 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM 313 (407)
Q Consensus 283 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 313 (407)
..+++++.|...|||.++ .+..+.++.
T Consensus 359 g~I~s~GdDcytRiWsl~----~ghLl~tip 385 (425)
T KOG2695|consen 359 GSIFSVGDDCYTRIWSLD----SGHLLCTIP 385 (425)
T ss_pred ceEEEccCeeEEEEEecc----cCceeeccC
Confidence 577789999999999998 778777665
No 296
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.74 E-value=2.8e-06 Score=71.22 Aligned_cols=165 Identities=14% Similarity=0.164 Sum_probs=104.3
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeee----ccccceEEEEEEECCC------CCeEEEEeCCCeEEE
Q 015438 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL----AKSLRWTVTDTSLSPD------QRHLVYASMSPIVHI 195 (407)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~sp~------~~~l~~~~~dg~i~v 195 (407)
.=.-++||||+.+||.+...|+|++||+... .+..+.. .......|..+.|.+. ...|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 3457899999999999999999999998753 2222111 1112345667767442 224566677787777
Q ss_pred EECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC----C-------eEEEEEcCCCeeee-
Q 015438 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----D-------CIYVYDLEANKLSL- 263 (407)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g-------~i~i~d~~~~~~~~- 263 (407)
|-+..+....... .-.|.. ...+...|.++.++|..++|++|+.. + -+.-|.+-++.+..
T Consensus 124 y~vs~gt~q~y~e------~hsfsf--~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk 195 (282)
T PF15492_consen 124 YLVSVGTNQGYQE------NHSFSF--SSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK 195 (282)
T ss_pred EEEEcccCCccee------eEEEEe--cccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE
Confidence 7664332111111 001111 11245589999999999988887632 1 25566543322110
Q ss_pred ----------------------e--e----eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCc
Q 015438 264 ----------------------R--I----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (407)
Q Consensus 264 ----------------------~--~----~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~ 300 (407)
. + ......|..|..| |++.+|++...+|.|.+|++.
T Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS-Pdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 196 QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS-PDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred EccccCccccccccccceeeccceeeeeccccCCCceEEEEEC-CCCCEEEEEEcCCeEEEEecC
Confidence 0 0 1235678899998 899999999999999999997
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.74 E-value=9.3e-07 Score=73.01 Aligned_cols=129 Identities=13% Similarity=-0.009 Sum_probs=94.2
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceecc
Q 015438 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (407)
Q Consensus 127 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~ 206 (407)
+..++++++++++++.+....|..|.++.................-.+..|+.....+|++..||++.|||++.......
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 88899999999999999999999999876422222222222233356788999999999999999999999987654332
Q ss_pred ccccccccceeeeecCCCCccccEEEEEEeCCCC--EEEEeeCCCeEEEEEcCCCeeeeeee
Q 015438 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRIL 266 (407)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~ 266 (407)
.... ....|.+.+..+.|++.|. +|+..-.-+.+.+.|+++++....+.
T Consensus 241 ~~ss-----------trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 241 EISS-----------TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred hhcc-----------cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 2211 1224788999999998664 55555566789999999987554443
No 298
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.74 E-value=4.3e-07 Score=86.86 Aligned_cols=187 Identities=17% Similarity=0.121 Sum_probs=135.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceecccccccccc
Q 015438 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (407)
Q Consensus 135 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 214 (407)
++..++.|+....+..+|+.+........ .. ...|+-+. .+++++.+|...|+|.+-|.++.+.+..+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~-v~--a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------ 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN-VS--ASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFD------ 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeee-cc--CCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeee------
Confidence 34567778777888889988764433221 11 11255554 478899999999999999999887655443
Q ss_pred ceeeeecCCCCccccEEEEEEeCCCCEEEEeeC---------CCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEE
Q 015438 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (407)
Q Consensus 215 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l 285 (407)
.|++.|.++.. .|+.|++++. |..|+|||++..+.+.-+.-+.++ .-+.|+|.-...+
T Consensus 215 ----------aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~ 281 (1118)
T KOG1275|consen 215 ----------AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRL 281 (1118)
T ss_pred ----------ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceE
Confidence 47777865554 6888888875 446899999988877666555544 6678888888889
Q ss_pred EEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 015438 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (407)
Q Consensus 286 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~ 345 (407)
++++..|...+-|..........+..+......+.++++++++..|+.|..+|.|.+|--
T Consensus 282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 999999999999943211111223333334556999999999999999999999999983
No 299
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.72 E-value=1.3e-06 Score=80.96 Aligned_cols=228 Identities=13% Similarity=0.039 Sum_probs=127.5
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccce--EEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccc
Q 015438 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW--TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 213 (407)
Q Consensus 136 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 213 (407)
+..++.+..++.|..||.++|+.+........... ...+... .+..++.+..++.+..+|..+++..-........
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 222 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK 222 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence 44666777889999999988866554332211000 0001111 1346777888899999999888754322111000
Q ss_pred cceeeeecCCCCccccE-EEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCC
Q 015438 214 DGLDFSAADDGGYSFGI-FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN 292 (407)
Q Consensus 214 ~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~ 292 (407)
..... .....+ .+..+ .+..+++++.+|.++.||..+++.+-.... ........ .+..++.++.+|
T Consensus 223 g~~~~------~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~---~~~~vyv~~~~G 289 (377)
T TIGR03300 223 GRTEL------ERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPAV---DDNRLYVTDADG 289 (377)
T ss_pred CCCch------hhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeecc--CCccCceE---eCCEEEEECCCC
Confidence 00000 000000 01111 245788888899999999999987655431 11222223 355777888999
Q ss_pred cEEEEeCcccCCCCceeeeeccccC-CeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCC
Q 015438 293 LCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 371 (407)
Q Consensus 293 ~i~vwd~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 371 (407)
.+..+|.. +++.+........ ....... .+..|++++.+|.|.++|..+++.+........ .+......
T Consensus 290 ~l~~~d~~----tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~----~~~~sp~~ 359 (377)
T TIGR03300 290 VVVALDRR----SGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS----GIASPPVV 359 (377)
T ss_pred eEEEEECC----CCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC----ccccCCEE
Confidence 99999997 6666544422111 1222222 466889999999999999999887665432111 11111112
Q ss_pred CCCCccCCCCCcceEEE
Q 015438 372 PQARDLKHPCDQSVATY 388 (407)
Q Consensus 372 ~~~~~l~~~~~~~v~~~ 388 (407)
.+++++....|+.|..|
T Consensus 360 ~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 360 VGDGLLVQTRDGDLYAF 376 (377)
T ss_pred ECCEEEEEeCCceEEEe
Confidence 23455555556555544
No 300
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=2.8e-06 Score=77.14 Aligned_cols=248 Identities=13% Similarity=0.121 Sum_probs=148.9
Q ss_pred ceeeeeccCCCCcccccC--CCce-EEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCC
Q 015438 106 HMLSRYLPVNGPWPVDQT--TSRA-YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (407)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h--~~~v-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 182 (407)
.++|++..+.....+... ...+ .-+.||.|++++|--.. ..|.||+..+-..+..... ....|....|+|.++
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl---ki~gIr~FswsP~~~ 359 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL---KISGIRDFSWSPTSN 359 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc---CCccccCcccCCCcc
Confidence 445555444443333321 1122 23589999999997655 5799999776322222111 122488999999998
Q ss_pred eEEEEeCC-----CeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC----------
Q 015438 183 HLVYASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------- 247 (407)
Q Consensus 183 ~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------- 247 (407)
.||.=+.. ..+.+..+.+++.+...++... .-..|.|-.+|.+|++--.
T Consensus 360 llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV----------------sDckLhWQk~gdyLcvkvdR~tK~~~~g~ 423 (698)
T KOG2314|consen 360 LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV----------------SDCKLHWQKSGDYLCVKVDRHTKSKVKGQ 423 (698)
T ss_pred eEEEEcccccCCcceEEEEecCccceeeeccceee----------------eccEEEeccCCcEEEEEEEeeccccccce
Confidence 88874321 3566677766666555443322 1234677778888876321
Q ss_pred CCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeC---CCcEEEEeCcccCCCCceeeeeccccCCeEEEEe
Q 015438 248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS 324 (407)
Q Consensus 248 dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 324 (407)
-..+.|+.++..........-...|...+|- |.|+.+++-+. ..++.+|.+.........+..+.. ...+.+.|
T Consensus 424 f~n~eIfrireKdIpve~velke~vi~FaWE-P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfw 500 (698)
T KOG2314|consen 424 FSNLEIFRIREKDIPVEVVELKESVIAFAWE-PHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFW 500 (698)
T ss_pred EeeEEEEEeeccCCCceeeecchheeeeeec-cCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEE
Confidence 1235666666554322222456788899996 66666655443 357999988743223344444432 44678999
Q ss_pred cCCCCEEEEEe---CCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCC
Q 015438 325 RGDGRYLISNG---KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380 (407)
Q Consensus 325 s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 380 (407)
+|.|++++.++ ..|.+.++|+.-.....+ ........+-+.+.|.||++..+
T Consensus 501 sPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~----~~~eh~~at~veWDPtGRYvvT~ 555 (698)
T KOG2314|consen 501 SPKGRFVVVAALVSRRGDLEFYDTDYADLKDT----ASPEHFAATEVEWDPTGRYVVTS 555 (698)
T ss_pred cCCCcEEEEEEecccccceEEEecchhhhhhc----cCccccccccceECCCCCEEEEe
Confidence 99999998765 578999999885222111 11122334556678999888654
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.71 E-value=8.8e-06 Score=70.07 Aligned_cols=189 Identities=17% Similarity=0.150 Sum_probs=119.1
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceecccccccccc
Q 015438 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (407)
Q Consensus 135 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 214 (407)
++..+++++.++.|..||..+|+.+............ . ...+..+++++.++.|+.+|..+++..-........
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~- 108 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP- 108 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG----E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce----e-eecccccccccceeeeEecccCCcceeeeecccccc-
Confidence 5667777789999999999999777665543222221 1 124556677778889999999999875442111000
Q ss_pred ceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCC----------e-EEEEecCCCCC
Q 015438 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD----------V-NTVCFGDESGH 283 (407)
Q Consensus 215 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------v-~~i~~s~~~~~ 283 (407)
... ....+....++..++++..++.|..+|+++|+.+-........ + ..+.+ .++
T Consensus 109 ----------~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~- 174 (238)
T PF13360_consen 109 ----------PAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI--SDG- 174 (238)
T ss_dssp ----------TCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC--CTT-
T ss_pred ----------ccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE--ECC-
Confidence 000 1112222223778888888999999999999987776653322 1 23333 234
Q ss_pred EEEEEeCCCc-EEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCc
Q 015438 284 LIYSGSDDNL-CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (407)
Q Consensus 284 ~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (407)
.++.++.++. +.+ |+. +++.+.... ...+..+ ...++..|+.++.++.|.+||+++++..
T Consensus 175 ~v~~~~~~g~~~~~-d~~----tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 175 RVYVSSGDGRVVAV-DLA----TGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EEEEECCTSSEEEE-ETT----TTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred EEEEEcCCCeEEEE-ECC----CCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 6667777775 555 997 666553222 2233331 3457778888889999999999998653
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=1.7e-06 Score=81.89 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=98.8
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC-----CCeEEEEeCCCeEEEEECCCC-ceecccc
Q 015438 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----QRHLVYASMSPIVHIVDVGSG-TMESLAN 208 (407)
Q Consensus 135 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~~~dg~i~vwd~~~~-~~~~~~~ 208 (407)
+|.++++|+.||.|.|-.+.+.+...... ...++.+++++|+ .+.+++|+..| +.++.-+-- .....
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d----f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-- 154 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD----FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-- 154 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe----cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--
Confidence 49999999999999999998875544322 2336999999997 67899999988 666542210 00000
Q ss_pred ccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCe------EEEEecCCCC
Q 015438 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV------NTVCFGDESG 282 (407)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v------~~i~~s~~~~ 282 (407)
. .....++|.++.|. |++||-++.+| |++||+.+++.+..+......+ ..+.|. +.
T Consensus 155 --~-----------l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~--~~ 216 (846)
T KOG2066|consen 155 --V-----------LSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ--DE 216 (846)
T ss_pred --e-----------eecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec--CC
Confidence 0 01234589999995 77999998887 9999999998887765443333 457785 45
Q ss_pred CEEEEEeCCCcEEEEeCc
Q 015438 283 HLIYSGSDDNLCKVWDRR 300 (407)
Q Consensus 283 ~~l~s~~~d~~i~vwd~~ 300 (407)
..|+.|-.| +|+|..++
T Consensus 217 ~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 217 DRLVIGWGD-SVKICSIK 233 (846)
T ss_pred CeEEEecCC-eEEEEEEe
Confidence 566676554 78888887
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.69 E-value=1.9e-05 Score=78.30 Aligned_cols=217 Identities=16% Similarity=0.121 Sum_probs=135.6
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCce
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~ 203 (407)
.+.|.++.|..++..++.+..+|.|.+-|.++..... .......|.+++||||++.++..+..+++.+.+- +-.+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei----vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~ 142 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI----VGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEP 142 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee----eeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccc
Confidence 4689999999999999999999999999988752221 1223335999999999999999988888876542 1111
Q ss_pred eccccc----------cccccce-eeeecCCCC------------------ccccEEEEEEeCCCCEEEEe-----eCCC
Q 015438 204 ESLANV----------TEIHDGL-DFSAADDGG------------------YSFGIFSLKFSTDGRELVAG-----SSDD 249 (407)
Q Consensus 204 ~~~~~~----------~~~~~~~-~~~~~~~~~------------------~~~~v~~~~~s~~~~~l~~~-----~~dg 249 (407)
+....+ ....-+. ....+...| ....=++++|--||.++++. ....
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 111111 0000000 000000000 11123468999999999883 3337
Q ss_pred eEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEe---CCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecC
Q 015438 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (407)
Q Consensus 250 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 326 (407)
.|++||-+ +..-..-....+--.+++|- |.|.++++-. .|+.|.+|...-.. .+.-...+......+..++|+.
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErNGL~-hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERNGLR-HGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeec-CCCCeEeeeeecCCCCcEEEEecCCcc-ccccccCCcccccchheeeecC
Confidence 89999987 44322222223344678996 6888887753 45679998764111 2222222222233489999999
Q ss_pred CCCEEEE---EeCCCcEEEEECCCC
Q 015438 327 DGRYLIS---NGKDQAIKLWDIRKM 348 (407)
Q Consensus 327 ~~~~l~s---~~~dg~i~iwd~~~~ 348 (407)
++..|++ ......|++|-+.+.
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCCceeeeecccccceEEEEEecCe
Confidence 9999987 555566999998774
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.8e-07 Score=81.36 Aligned_cols=215 Identities=10% Similarity=0.028 Sum_probs=147.9
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeC-CCeEEEEECCCC
Q 015438 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSG 201 (407)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~i~vwd~~~~ 201 (407)
|...|+-+... -.+++.+++.||.++.|....-.-+.-......|...|.+++.+-++.++++.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 55556655544 3578999999999999986542222223344567777888999999999999777 999999999987
Q ss_pred ceeccccccccccceeeeecCCCCccccEEEEEEeCCCC--EEEEe-eCCCeEEEEEcCCCe--eeeeeeccCCCeEEEE
Q 015438 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAG-SSDDCIYVYDLEANK--LSLRILAHTSDVNTVC 276 (407)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~i~ 276 (407)
......++...+. ..++..++... .|+++ -.++.+.++|-.... ....-..|..+|.++.
T Consensus 87 DminmiKL~~lPg---------------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~ 151 (558)
T KOG0882|consen 87 DMINMIKLVDLPG---------------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIR 151 (558)
T ss_pred chhhhcccccCCC---------------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEE
Confidence 7665554443321 11222222211 34433 457889999976543 2233346899999999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEeCcc-cC-CCCceeee---------eccccCCeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 015438 277 FGDESGHLIYSGSDDNLCKVWDRRC-LN-VKGKPAGV---------LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (407)
Q Consensus 277 ~s~~~~~~l~s~~~d~~i~vwd~~~-~~-~~~~~~~~---------~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~ 345 (407)
++ +.+..+++....|.|.-|.... ++ +..+.... +.......+++.|+|+|..+.+-+.|..|+++++
T Consensus 152 y~-qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 152 YN-QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred ee-ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence 98 7788888988899999998861 10 01111111 1123445789999999999999999999999999
Q ss_pred CCCCCcccc
Q 015438 346 RKMSSNASC 354 (407)
Q Consensus 346 ~~~~~~~~~ 354 (407)
++++..+.+
T Consensus 231 KtGklvqei 239 (558)
T KOG0882|consen 231 KTGKLVQEI 239 (558)
T ss_pred ccchhhhhh
Confidence 999876654
No 305
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=2.5e-06 Score=80.47 Aligned_cols=214 Identities=14% Similarity=0.104 Sum_probs=148.2
Q ss_pred cccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC------------CCeEE
Q 015438 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD------------QRHLV 185 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~------------~~~l~ 185 (407)
..+..|+ -.++.|+|.| +||.|+. ..|.+.|..+-+.++ ....|...|+.+.|.|- .-.||
T Consensus 11 G~l~~sN--~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliA 83 (1062)
T KOG1912|consen 11 GPLSRSN--RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIA 83 (1062)
T ss_pred CCCCccc--ccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEE
Confidence 3444444 6688999987 5666654 678999987754444 34556678999999863 12567
Q ss_pred EEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeC---CC-CEEEEeeCCCeEEEEEcCCCee
Q 015438 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DG-RELVAGSSDDCIYVYDLEANKL 261 (407)
Q Consensus 186 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~~~~~dg~i~i~d~~~~~~ 261 (407)
++...|.|.+||...+..+..+. .+..++..++|-+ +. ..|++-....+|.+|+..+|+.
T Consensus 84 saD~~GrIil~d~~~~s~~~~l~----------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 84 SADISGRIILVDFVLASVINWLS----------------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred eccccCcEEEEEehhhhhhhhhc----------------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence 77788999999998776543332 2444788888877 23 4666667778999999999998
Q ss_pred eeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcc---cCCCCceeeeeccccC------------C--------
Q 015438 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC---LNVKGKPAGVLMGHLE------------G-------- 318 (407)
Q Consensus 262 ~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~------------~-------- 318 (407)
+-+.........|+.+.|-+...+..-+..|.+.+.+.-. +...++..+.-..|.. .
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa 227 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA 227 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence 8777666667888999888888888888888888877531 1223344433333322 0
Q ss_pred --e---EEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccc
Q 015438 319 --I---TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 319 --i---~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (407)
| ..++|+|.-+-++.......+.++|++-..++...
T Consensus 228 ~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vv 268 (1062)
T KOG1912|consen 228 YFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVV 268 (1062)
T ss_pred hHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEE
Confidence 1 13467887766666777888999999987776654
No 306
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.65 E-value=4.1e-07 Score=76.57 Aligned_cols=219 Identities=15% Similarity=0.118 Sum_probs=137.9
Q ss_pred eEEEEEEECCCCCeEEEEeCCCeEEEEECCCCc-eeccccccccccceeeeecCCCCccccEEEEEEeCCCC--EEEEee
Q 015438 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGS 246 (407)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~ 246 (407)
..|+++.|...|.+|++|...|.|.++.-+... +...+-..-......|.....-.-...|..+.|-.++. .++..+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 358999999999999999999999999765432 11111000000011111111112233678888887553 567777
Q ss_pred CCCeEEEEEcCCCee-------------------ee--------e----------------eeccCCCeEEEEecCCCCC
Q 015438 247 SDDCIYVYDLEANKL-------------------SL--------R----------------ILAHTSDVNTVCFGDESGH 283 (407)
Q Consensus 247 ~dg~i~i~d~~~~~~-------------------~~--------~----------------~~~~~~~v~~i~~s~~~~~ 283 (407)
.|.+|++|-+..... +. . -..|..-+.++.|+ .+..
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N-sD~e 185 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN-SDKE 185 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec-Cchh
Confidence 899999998753310 00 0 02466667889997 6666
Q ss_pred EEEEEeCCCcEEEEeCcccCCCCceeeeeccc-----cCCeEEEEecCC-CCEEEEEeCCCcEEEEECCCCC------Cc
Q 015438 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-----LEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMS------SN 351 (407)
Q Consensus 284 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-----~~~i~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~------~~ 351 (407)
.+++ ..|=.|.+|++.-.+... .+..+..| ..-|++..|+|. ...+.-++..|.|++-|+|... .+
T Consensus 186 t~lS-aDdLrINLWnl~i~D~sF-nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLLS-ADDLRINLWNLEIIDGSF-NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eeee-ccceeeeeccccccCCce-EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 5555 467789999986332111 12223333 345889999995 4566677789999999999422 11
Q ss_pred cccc------CCCccccccceeeeCCCCCCccCCCCCcceEEEeCC
Q 015438 352 ASCN------LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (407)
Q Consensus 352 ~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh 391 (407)
.... .........|+.+.|++.||++.+-+--++++|+..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvn 309 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVN 309 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecc
Confidence 1111 113345566888999999999999888999999854
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.62 E-value=1.5e-07 Score=55.47 Aligned_cols=39 Identities=31% Similarity=0.631 Sum_probs=36.0
Q ss_pred CeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEe
Q 015438 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298 (407)
Q Consensus 259 ~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd 298 (407)
++++..+.+|.+.|.+++|+ +++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~-~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWS-PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEE-TTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEe-cccccceeeCCCCEEEEEC
Confidence 36788899999999999998 7799999999999999997
No 308
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.62 E-value=3e-05 Score=65.98 Aligned_cols=211 Identities=14% Similarity=0.138 Sum_probs=116.6
Q ss_pred cccccCCCceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEE
Q 015438 118 WPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (407)
Q Consensus 118 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vw 196 (407)
+.+.+....+..++|+|+.. ++++....+.|..++.+ |+.+... ...+. +-.-.+++..++.++++.-.++.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i-~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI-PLDGF-GDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE-E-SS--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE-eCCCC-CCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 34555667799999999755 56666677888888875 5555443 33332 236778888888777776678999999
Q ss_pred ECCCCce-eccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCC---Ceeeeee-------
Q 015438 197 DVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---NKLSLRI------- 265 (407)
Q Consensus 197 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~------- 265 (407)
++..... ....... .+.......+...+-.++|+|.++.|+++-+..-..+|.+.. ...+...
T Consensus 92 ~~~~~~~~~~~~~~~------~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQ------KISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD 165 (248)
T ss_dssp EE----TT--EEEEE------EEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred EEeccccccchhhce------EEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc
Confidence 9854321 1111100 011111112444688999999888787777766666666543 1111111
Q ss_pred -eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeecccc---------CCeEEEEecCCCCEEEEEe
Q 015438 266 -LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL---------EGITFIDSRGDGRYLISNG 335 (407)
Q Consensus 266 -~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~s~~ 335 (407)
......+.+++++|.++++++.+.....|..+|. .++++..+.-.. ...-.|+|.++|++.++ +
T Consensus 166 ~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-----~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-s 239 (248)
T PF06977_consen 166 DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-----QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-S 239 (248)
T ss_dssp HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-----T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-E
T ss_pred ccceeccccceEEcCCCCeEEEEECCCCeEEEECC-----CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-c
Confidence 1234467899999999999999999999999996 577665443111 24678999999975554 4
Q ss_pred CCCcEEEE
Q 015438 336 KDQAIKLW 343 (407)
Q Consensus 336 ~dg~i~iw 343 (407)
+-+...+|
T Consensus 240 EpNlfy~f 247 (248)
T PF06977_consen 240 EPNLFYRF 247 (248)
T ss_dssp TTTEEEEE
T ss_pred CCceEEEe
Confidence 55544443
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.62 E-value=5.5e-07 Score=86.17 Aligned_cols=184 Identities=14% Similarity=0.192 Sum_probs=132.0
Q ss_pred CCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC
Q 015438 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (407)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 259 (407)
++..++.|+....+..+|+++.+......... ..|.-|+. +++++.+|...|+|.+-|.++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a----------------~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~ 207 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA----------------SGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF 207 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC----------------CceEEEEe--cCcEEEeecccceEEeecCCcC
Confidence 45567778888888899998887665554322 13555554 6789999999999999999999
Q ss_pred eeeeeeeccCCCeEEEEecCCCCCEEEEEeC---------CCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCC-CC
Q 015438 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSD---------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GR 329 (407)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~ 329 (407)
+.+.++.+|.+.|.++... |++|+++|. |..|+|||+| ..+.+..+.-+.++ .-+.|.|. ..
T Consensus 208 ~~iht~~aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLR----mmral~PI~~~~~P-~flrf~Psl~t 279 (1118)
T KOG1275|consen 208 ETIHTFDAHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLR----MMRALSPIQFPYGP-QFLRFHPSLTT 279 (1118)
T ss_pred ceeeeeeccccceeeeecc---CCeEEEeecccccccccccchhhhhhhh----hhhccCCcccccCc-hhhhhcccccc
Confidence 9999999999999888764 888888874 5668999999 44444444333333 56678884 35
Q ss_pred EEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCC-CcceEEEe
Q 015438 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYK 389 (407)
Q Consensus 330 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~v~~~~ 389 (407)
.++.++..|...+-|..+......-..........+..+.+++++..++.++ ++.|.+|.
T Consensus 280 ~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 280 RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 6888888999999995444333211111222333377888899998888764 78888887
No 310
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=7.9e-06 Score=71.42 Aligned_cols=251 Identities=16% Similarity=0.100 Sum_probs=140.1
Q ss_pred ccccCCCceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCC-eEEEEeCCCeEEEE
Q 015438 119 PVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIV 196 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~i~vw 196 (407)
.+..|...|..++|||..+ ++..++.+..|+|.|+++...+.... .+ ..+++++|.-|.. +|..|-..|.|.||
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---AY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---cc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 5567788999999999887 67888999999999999864443322 22 4699999988655 55566788999999
Q ss_pred ECCCCceeccccccccccceeeeecCCCCccccEEEEE------EeCCCCEEEEeeCCCeEEEEEcCCC----eeeeeee
Q 015438 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK------FSTDGRELVAGSSDDCIYVYDLEAN----KLSLRIL 266 (407)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~ 266 (407)
|++..+........... ..+|..++ ..+.|.+++..+.+ +..|.+... .++..+
T Consensus 264 D~R~~~~~~~e~~a~~t-------------~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel- 327 (463)
T KOG1645|consen 264 DMRQPEGPLMELVANVT-------------INPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL- 327 (463)
T ss_pred EccCCCchHhhhhhhhc-------------cCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc-
Confidence 99865432211111000 01222222 22345555555443 556665422 222222
Q ss_pred ccCCCeEEEEecCCCCCEEEEEeCCC---cEEEEeCcccCCCCceeeeec-cc-cCCe------EEEEecCCCCEEE-EE
Q 015438 267 AHTSDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKGKPAGVLM-GH-LEGI------TFIDSRGDGRYLI-SN 334 (407)
Q Consensus 267 ~~~~~v~~i~~s~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~-~~-~~~i------~~~~~s~~~~~l~-s~ 334 (407)
...+.+.++++++...++|++.-.+- +++.-=.+.....+.++...+ ++ .+.- ..+.-.++.++|+ ++
T Consensus 328 e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g 407 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG 407 (463)
T ss_pred CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEec
Confidence 33566777777755555665543321 111110011111333332221 11 1110 1111233445554 45
Q ss_pred eCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCCcceEEEeCCc
Q 015438 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS 392 (407)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~gh~ 392 (407)
+.-+.+.+||..+++.++++... ....+|..... ..+.+|+.=.|..+++|+..+
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~~--epv~Dicp~~~-n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLALS--EPVLDICPNDT-NGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred CCcceeEEeccchhheeeecccC--cceeecceeec-CCcchhhheecceEEEEecCC
Confidence 56678999999999988877543 33334332222 224567777788888887654
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.60 E-value=3.1e-05 Score=76.96 Aligned_cols=200 Identities=13% Similarity=0.109 Sum_probs=132.8
Q ss_pred ceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC
Q 015438 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (407)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 248 (407)
...|.++.|..+...++.+...|.|.+-|.++......-.+. ..|.+++|+||+..++..+..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd-----------------~GI~aaswS~Dee~l~liT~~ 130 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD-----------------NGISAASWSPDEELLALITGR 130 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc-----------------CceEEEeecCCCcEEEEEeCC
Confidence 357999999999999999999999999988877654433322 279999999999999999888
Q ss_pred CeEEEEEc----CCCeee-------------------eeeec---------------------cCCCeEEEEecCCCCCE
Q 015438 249 DCIYVYDL----EANKLS-------------------LRILA---------------------HTSDVNTVCFGDESGHL 284 (407)
Q Consensus 249 g~i~i~d~----~~~~~~-------------------~~~~~---------------------~~~~v~~i~~s~~~~~~ 284 (407)
.++.+-+- -.-+++ ..+.+ ..+.-++|+|- .+|++
T Consensus 131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR-gDg~~ 209 (1265)
T KOG1920|consen 131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR-GDGEY 209 (1265)
T ss_pred cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc-cCCcE
Confidence 87766532 111111 11221 11122459995 89999
Q ss_pred EEEEe-----CCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEe---CCCcEEEEECCCCCCcccccC
Q 015438 285 IYSGS-----DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG---KDQAIKLWDIRKMSSNASCNL 356 (407)
Q Consensus 285 l~s~~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~ 356 (407)
+++.. ..+.|+|||.. +..-..-..-..--.+++|-|.|..+++-. .|+.|.+|.- ++-....+..
T Consensus 210 fAVs~~~~~~~~RkirV~drE-----g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l 283 (1265)
T KOG1920|consen 210 FAVSFVESETGTRKIRVYDRE-----GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVL 283 (1265)
T ss_pred EEEEEEeccCCceeEEEeccc-----chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCcccccccc
Confidence 98843 33799999974 222111111222335789999999998764 4667999984 4433344433
Q ss_pred CCccccccceeeeCCCCCCccCC---CC-CcceEEEeCCc
Q 015438 357 GFRSYEWDYRWMDYPPQARDLKH---PC-DQSVATYKGHS 392 (407)
Q Consensus 357 ~~~~~~~~v~~~~~~~~~~~l~~---~~-~~~v~~~~gh~ 392 (407)
........+..+.|+.++.+|++ .. ...|+.|.--.
T Consensus 284 ~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 284 PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 33444444788899999999987 33 34488886443
No 312
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.57 E-value=2.3e-08 Score=91.81 Aligned_cols=206 Identities=17% Similarity=0.154 Sum_probs=133.9
Q ss_pred CceEEEEECCCC--CEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC-CCCeEEEEe----CCCeEEEEE
Q 015438 125 SRAYVSQFSADG--SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYAS----MSPIVHIVD 197 (407)
Q Consensus 125 ~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~----~dg~i~vwd 197 (407)
.-+.|+++.-+. ..+++|..+|.|.+-.+...... .....+.+..+.++++|++ |.+.||+|- .|..+.|||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 356677766543 46888999999999887654221 1223455667899999998 556677763 356899999
Q ss_pred CCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEe
Q 015438 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (407)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 277 (407)
+.++-..... ...|.. +......+++|..+.+++++|.....+.++|++.... .........+..+.+
T Consensus 136 i~s~ltvPke-------~~~fs~----~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tV 203 (783)
T KOG1008|consen 136 INSLLTVPKE-------SPLFSS----STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITV 203 (783)
T ss_pred cccccCCCcc-------cccccc----ccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhccccee
Confidence 9877321111 011111 1222455899998999999999999999999984321 122223456777888
Q ss_pred cCCCCCEEEEEeCCCcEEEEe-CcccCCCCceeeeeccccC----CeEEEEecCCCC-EEEEEe-CCCcEEEEECCC
Q 015438 278 GDESGHLIYSGSDDNLCKVWD-RRCLNVKGKPAGVLMGHLE----GITFIDSRGDGR-YLISNG-KDQAIKLWDIRK 347 (407)
Q Consensus 278 s~~~~~~l~s~~~d~~i~vwd-~~~~~~~~~~~~~~~~~~~----~i~~~~~s~~~~-~l~s~~-~dg~i~iwd~~~ 347 (407)
.|-.++++++-. ||.|-+|| .+. -..++..+..... .+..++|.|... .+++.. ..++|+++|+..
T Consensus 204 dp~~~nY~cs~~-dg~iAiwD~~rn---ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 204 DPFSPNYFCSNS-DGDIAIWDTYRN---IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCCCCCceeccc-cCceeeccchhh---hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 766888886655 99999999 442 2233333332222 388999999543 344444 467899999874
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.57 E-value=2.7e-05 Score=67.33 Aligned_cols=194 Identities=21% Similarity=0.265 Sum_probs=119.5
Q ss_pred CCCcccccCCCceEEEEECCCCCEEEEEeC-----CCeEEEEEcCCC-eEEeEeeeccccceEEEEEEECCCCCeEEEEe
Q 015438 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188 (407)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 188 (407)
..-.-|.+| -.||+||++|++.-. .|.|-|||...+ .++.+ ...+.-....+.+.||++.|+++.
T Consensus 47 ~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E---~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 47 PPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGE---FPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred CCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeE---ecCCCcChhhEEEcCCCCEEEEEc
Confidence 344555666 379999999998643 478999999843 22322 333333456788999998888763
Q ss_pred C------------------CCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCC-
Q 015438 189 M------------------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD- 249 (407)
Q Consensus 189 ~------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg- 249 (407)
. +..+...|..+++......+. ..-|...|.-+++.++|..++..-..|
T Consensus 118 GGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp------------~~~~~lSiRHLa~~~~G~V~~a~Q~qg~ 185 (305)
T PF07433_consen 118 GGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP------------PDLHQLSIRHLAVDGDGTVAFAMQYQGD 185 (305)
T ss_pred CCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC------------ccccccceeeEEecCCCcEEEEEecCCC
Confidence 1 123444555555543332221 123666899999999987655543333
Q ss_pred ------eEEEEEcCCCeeeeeee-------ccCCCeEEEEecCCCCCEEE-EEeCCCcEEEEeCcccCCCCceeeeeccc
Q 015438 250 ------CIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGH 315 (407)
Q Consensus 250 ------~i~i~d~~~~~~~~~~~-------~~~~~v~~i~~s~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 315 (407)
-|-+++.. +.+..+. .-.+.+-+|+++ .++.+++ |+-..+.+.+||.. ++..+....
T Consensus 186 ~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~-~~g~~ia~tsPrGg~~~~~d~~----tg~~~~~~~-- 256 (305)
T PF07433_consen 186 PGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAAD-RDGRLIAVTSPRGGRVAVWDAA----TGRLLGSVP-- 256 (305)
T ss_pred CCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEe-CCCCEEEEECCCCCEEEEEECC----CCCEeeccc--
Confidence 24444433 2222222 345789999998 6776664 45567899999998 777766553
Q ss_pred cCCeEEEEecCCCCEEEEEeCCCcE
Q 015438 316 LEGITFIDSRGDGRYLISNGKDQAI 340 (407)
Q Consensus 316 ~~~i~~~~~s~~~~~l~s~~~dg~i 340 (407)
-..+..++-.+++ ++++.+. |.+
T Consensus 257 l~D~cGva~~~~~-f~~ssG~-G~~ 279 (305)
T PF07433_consen 257 LPDACGVAPTDDG-FLVSSGQ-GQL 279 (305)
T ss_pred cCceeeeeecCCc-eEEeCCC-ccE
Confidence 2346677777666 5665554 443
No 314
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.55 E-value=1.8e-06 Score=80.56 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=108.5
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 015438 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (407)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~ 202 (407)
|...|.--+++..+++++.|+.-|.+++|+-..+..... ...+..+.+..+..|++..++|+|+..|.|.|+-+....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc--cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 345566667888899999999999999999876632221 222234456777889999999999999999999887644
Q ss_pred eeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCe----eeeeeeccCCCeEEEEec
Q 015438 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFG 278 (407)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~i~~s 278 (407)
......... .+..|...|++++|++++..+++|...|.|..-.+.+.. ....+....+.|..+.+.
T Consensus 110 p~~~~~~t~----------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 110 PRDLDYVTP----------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CCcceeecc----------ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 332222221 222377799999999999999999999999988887621 222333456788888774
Q ss_pred CCCCCEEEEEe
Q 015438 279 DESGHLIYSGS 289 (407)
Q Consensus 279 ~~~~~~l~s~~ 289 (407)
.+.+|++..
T Consensus 180 --q~~LLVStl 188 (726)
T KOG3621|consen 180 --QSYLLVSTL 188 (726)
T ss_pred --cceehHhhh
Confidence 455555443
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=5.5e-06 Score=78.53 Aligned_cols=184 Identities=14% Similarity=0.162 Sum_probs=127.1
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCce
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~ 203 (407)
...+.|++++ +++|+.|..+|.|++++.... . .. ...|... ..+|.++++|+.||+|.|-.+-+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~---~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KT---NFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-cc---ccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 3456677776 578999999999999997653 1 11 1112111 56899999999999999999887765
Q ss_pred eccccccccccceeeeecCCCCccccEEEEEEeCC-----CCEEEEeeCCCeEEEEEcCC--CeeeeeeeccCCCeEEEE
Q 015438 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-----GRELVAGSSDDCIYVYDLEA--NKLSLRILAHTSDVNTVC 276 (407)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~v~~i~ 276 (407)
....... .++.+++++|+ .+.+++|+.-| +.++.-+- .+....+....++|.+++
T Consensus 106 ~~~~df~-----------------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~ 167 (846)
T KOG2066|consen 106 ITQYDFK-----------------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIK 167 (846)
T ss_pred ceeEecC-----------------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEE
Confidence 5444322 27899999997 45799999888 77775431 111124556789999999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCC------eEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 015438 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG------ITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (407)
Q Consensus 277 ~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~------i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 348 (407)
|. |+++|-++.+| |+|||+. ..+.+..+...... ...+.|.++.+.+ -|+..+|+|..++..
T Consensus 168 W~---g~lIAWand~G-v~vyd~~----~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV--IGW~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 168 WR---GNLIAWANDDG-VKVYDTP----TRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV--IGWGDSVKICSIKKR 235 (846)
T ss_pred ec---CcEEEEecCCC-cEEEecc----ccceeeccCCCCCCCCcccCCCceEecCCCeEE--EecCCeEEEEEEecc
Confidence 95 78898887765 8999997 55555544432222 3456787665433 355678999999843
No 316
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.54 E-value=2.2e-05 Score=72.73 Aligned_cols=178 Identities=15% Similarity=0.136 Sum_probs=111.9
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEeEeeeccccc-e---EEEEEEECC--CCCeEEEEeCCCeEEEEECCCCceecccccc
Q 015438 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-W---TVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVT 210 (407)
Q Consensus 137 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~---~v~~~~~sp--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 210 (407)
..++.+..++.+..+|..+|+.+.......... . .+..+.-+| .+..+++++.+|.++.||..+++..-.....
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~ 270 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS 270 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC
Confidence 467778888999999999886554322111000 0 000111111 3557788888999999999988654322110
Q ss_pred ccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeecc-CCCeEEEEecCCCCCEEEEEe
Q 015438 211 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGS 289 (407)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~i~~s~~~~~~l~s~~ 289 (407)
...... ..+..+++++.+|.++.+|..+++.+-..... ......... .+..+++++
T Consensus 271 ------------------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~ 327 (377)
T TIGR03300 271 ------------------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGD 327 (377)
T ss_pred ------------------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEe
Confidence 111122 24567888889999999999999876544221 122223233 356888999
Q ss_pred CCCcEEEEeCcccCCCCceeeeeccccCCeE-EEEecCCCCEEEEEeCCCcEEEE
Q 015438 290 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT-FIDSRGDGRYLISNGKDQAIKLW 343 (407)
Q Consensus 290 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~s~~~dg~i~iw 343 (407)
.+|.|.++|.. +++.+..+..+...+. +..+. + ..|+.++.||.|..|
T Consensus 328 ~~G~l~~~d~~----tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 328 FEGYLHWLSRE----DGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEECC----CCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 99999999998 7888887775554332 22332 3 358889999998876
No 317
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.52 E-value=5e-06 Score=76.57 Aligned_cols=110 Identities=19% Similarity=0.229 Sum_probs=77.2
Q ss_pred EEEEEEeC-CCCEEEEe----eCCCe----EEEEEcCCCee--e--eeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 015438 230 IFSLKFST-DGRELVAG----SSDDC----IYVYDLEANKL--S--LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296 (407)
Q Consensus 230 v~~~~~s~-~~~~l~~~----~~dg~----i~i~d~~~~~~--~--~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~v 296 (407)
..++.|+. +...+.+. +.+|. -.+|++...+. + ..+ ...+.|.+++++ ++...++.|+.||.|.+
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~s-p~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARS-PSEDKLVLGCEDGSIIL 285 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecC-cccceEEEEecCCeEEE
Confidence 35666765 33344443 22333 35666654432 1 122 567789999998 78889999999999999
Q ss_pred EeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 015438 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 347 (407)
||.. .+ +..+....-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus 286 yD~~----~~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 286 YDTT----RG--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEcC----CC--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9986 22 222333445678999999999999999999999999763
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.51 E-value=3.7e-06 Score=77.41 Aligned_cols=114 Identities=14% Similarity=0.147 Sum_probs=77.8
Q ss_pred cCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCC
Q 015438 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (407)
Q Consensus 122 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~ 201 (407)
.+.+.|.|++++|+.+.|+.|+.||.|.+||...+..... ...-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-----eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 4678999999999999999999999999999877632221 12234788999999999999999999999999755
Q ss_pred ceeccccccccccceeeeecCCCCccccEEEEEEeCCCC
Q 015438 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (407)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 240 (407)
.........+..+...+.....-.+...+..++|.+...
T Consensus 332 pi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~ 370 (545)
T PF11768_consen 332 PIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQ 370 (545)
T ss_pred ccceeeccccCCCccEEeeehhccCcchhheeEeccCCC
Confidence 432222222222111222222223444566777775443
No 319
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=9.1e-06 Score=77.55 Aligned_cols=109 Identities=13% Similarity=0.200 Sum_probs=83.2
Q ss_pred EEEEECCCCCEEEEEeC----CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCce
Q 015438 128 YVSQFSADGSLFVAGFQ----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (407)
Q Consensus 128 ~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~ 203 (407)
+-..|+|...+||+++- .|.|.||- ++|++... ...+- .+++++|+|..-.|+.|=.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~-Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD-VTYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc-cccce---ehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 34579999999988753 68899985 55643322 22222 377899999988899988889999999876654
Q ss_pred eccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcC
Q 015438 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (407)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 257 (407)
-... ..|+.+|..+.||++|..++++..-|.|.+|...
T Consensus 94 htv~----------------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVV----------------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeec----------------cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 2221 1377799999999999999999999999999875
No 320
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.46 E-value=0.00012 Score=63.08 Aligned_cols=180 Identities=18% Similarity=0.147 Sum_probs=113.3
Q ss_pred CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCC
Q 015438 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (407)
Q Consensus 145 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (407)
+|.|..||..+|+.+............+ +.. .+++..+++++.++.|+.||..+++..-.........
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~-~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~---------- 69 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPV-ATA-VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS---------- 69 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEE-ETE-EEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG----------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCcc-ceE-EEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc----------
Confidence 6889999999998877764422222222 112 2356678888899999999999998654444322110
Q ss_pred CccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeee-eccCC---CeEEEEecCCCCCEEEEEeCCCcEEEEeCc
Q 015438 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTS---DVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (407)
Q Consensus 225 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~---~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~ 300 (407)
.. . ...+..+++++.++.|+.+|..+++.+-.. ..... ........ ..++.++.+..++.|..+|++
T Consensus 70 ---~~---~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 70 ---GA---P--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-VDGDRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp ---SG---E--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-EETTEEEEEETCSEEEEEETT
T ss_pred ---ce---e--eecccccccccceeeeEecccCCcceeeeeccccccccccccccCce-EecCEEEEEeccCcEEEEecC
Confidence 01 1 224556777778889999999999987773 32211 11122221 237788888889999999998
Q ss_pred ccCCCCceeeeeccccCC----------e-EEEEecCCCCEEEEEeCCCcEEEEECCCCCCc
Q 015438 301 CLNVKGKPAGVLMGHLEG----------I-TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (407)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~----------i-~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (407)
+++.+......... + ..+.+. ++ .++.++.++.+..+|+.+++.+
T Consensus 141 ----tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~ 196 (238)
T PF13360_consen 141 ----TGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKL 196 (238)
T ss_dssp ----TTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEE
T ss_pred ----CCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEE
Confidence 88887776553322 1 222233 44 6777777775444499998744
No 321
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=4.1e-05 Score=72.56 Aligned_cols=218 Identities=12% Similarity=0.043 Sum_probs=143.8
Q ss_pred ceeeeeccCCCCcccccCCCceEEEEECCCC------------CEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEE
Q 015438 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADG------------SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT 173 (407)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 173 (407)
..+.+....+..+.++.|...|+.+.|.|.. -+||++...|.|.+||...+..+. ....+..++.
T Consensus 37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~q 113 (1062)
T KOG1912|consen 37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQ 113 (1062)
T ss_pred EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchh
Confidence 3344555667778889999999999998742 256777788999999998763332 3456677889
Q ss_pred EEEECC---CC-CeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeC-CCCEEEEeeCC
Q 015438 174 DTSLSP---DQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSD 248 (407)
Q Consensus 174 ~~~~sp---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d 248 (407)
.++|-| +. ..|++-.....|.+|+..+|+..-..... .....|+.+.| |.+.+..-+..
T Consensus 114 dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys----------------~~iLs~f~~DPfd~rh~~~l~s~ 177 (1062)
T KOG1912|consen 114 DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS----------------HEILSCFRVDPFDSRHFCVLGSK 177 (1062)
T ss_pred heeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC----------------CcceeeeeeCCCCcceEEEEccC
Confidence 999976 33 45666677789999999998764322211 11356688888 55566666666
Q ss_pred CeEEEEEcCC-------CeeeeeeeccCC-------------------------CeEEEEecCCCCCEEEEEeCCCcEEE
Q 015438 249 DCIYVYDLEA-------NKLSLRILAHTS-------------------------DVNTVCFGDESGHLIYSGSDDNLCKV 296 (407)
Q Consensus 249 g~i~i~d~~~-------~~~~~~~~~~~~-------------------------~v~~i~~s~~~~~~l~s~~~d~~i~v 296 (407)
|.|.+.+.-. ++....-..|.. ....++|+|.-.+.++. .....+.+
T Consensus 178 g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv 256 (1062)
T KOG1912|consen 178 GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLV 256 (1062)
T ss_pred ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEE
Confidence 7676665431 111111111111 01235667555555444 45678999
Q ss_pred EeCcccCCCCceeeeeccccCCeEEEEecCCC--CEEEEEeCCCcEEEEECCC
Q 015438 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~s~~~dg~i~iwd~~~ 347 (407)
+|+. -..++....-..+.+.-+.+-|++ ..|+..-.||.+.+|--+.
T Consensus 257 ~dle----~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 257 FDLE----YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred Ecch----hhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 9997 556666666566677778887765 4688888999999998665
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=6.4e-05 Score=72.15 Aligned_cols=212 Identities=11% Similarity=0.058 Sum_probs=128.6
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceE-EEEEEECCCCCeEEEEeCCC-----eEEEEECCCCcee
Q 015438 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT-VTDTSLSPDQRHLVYASMSP-----IVHIVDVGSGTME 204 (407)
Q Consensus 131 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~~~~dg-----~i~vwd~~~~~~~ 204 (407)
+|++.+..+|.|+.+|.|.+.+-.- .. ......+... |..+....+..+|++.+.|+ .|+||+++..+..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~--~~--~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF--QL--IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc--ee--eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 5788899999999999998887432 12 1122222223 33333333446777766554 5999999754321
Q ss_pred ccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcC----CCeeeeeeeccCCCeEEEEecCC
Q 015438 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE----ANKLSLRILAHTSDVNTVCFGDE 280 (407)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~v~~i~~s~~ 280 (407)
........+ .......+....++.+++.+.+-+.+|+|-.+|.|..+.=. .+....-......+|+.+.+. .
T Consensus 106 ~sP~c~~~~---ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~-~ 181 (933)
T KOG2114|consen 106 NSPQCLYEH---RIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR-S 181 (933)
T ss_pred CCcceeeee---eeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe-c
Confidence 110000000 11111112245578899999999999999999999988421 112222223456799999997 6
Q ss_pred CCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccc
Q 015438 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 281 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (407)
++..++-......|.+|.+.. ....+..+..|..++.|.+|++....++.++ +..|.+||....+.-..+
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~g---r~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSG---RTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred CCceeEEEEecceeEEEEecC---CCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 666533333345799999861 1222455777888889999987655455444 467999998865544333
No 323
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.41 E-value=0.00013 Score=66.94 Aligned_cols=238 Identities=13% Similarity=0.118 Sum_probs=127.5
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEE----------------------------------------eEeeec
Q 015438 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI----------------------------------------QKDILA 165 (407)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~----------------------------------------~~~~~~ 165 (407)
.|..+.|+++..-|++|...|.|.||.....+.. ......
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999888999999999999875322110 001111
Q ss_pred cccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeC-----CC-
Q 015438 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DG- 239 (407)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~- 239 (407)
....++|++++.| |=-++|+|..+|.+.|.|++....+....+.... ........|+++.|.. |+
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~--------~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESF--------LSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG----------T-SS----EEEEEEEEEE-TTSSS
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccc--------cccccccCeeEEEEEEEecCCCcc
Confidence 2235678999986 5558999999999999999887765544433300 0111333577788873 33
Q ss_pred --CEEEEeeCCCeEEEEEcC--C-Ce----eeeeeeccCCCeEEEEe-cCCC--------------------CCEEEEEe
Q 015438 240 --RELVAGSSDDCIYVYDLE--A-NK----LSLRILAHTSDVNTVCF-GDES--------------------GHLIYSGS 289 (407)
Q Consensus 240 --~~l~~~~~dg~i~i~d~~--~-~~----~~~~~~~~~~~v~~i~~-s~~~--------------------~~~l~s~~ 289 (407)
-.+++|+..|.+.+|.+- . +. .......+.++|..|.. +..+ ..++++ .
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-v 232 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-V 232 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-E
Confidence 378899999999999874 1 11 11122245566666553 1111 124434 4
Q ss_pred CCCcEEEEeCcccCCCCceeeeeccccCCeEEEEec-----CCCCEEEEEeCCCcEEEEECCCCCCcccccCCCcccccc
Q 015438 290 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-----GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWD 364 (407)
Q Consensus 290 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (407)
.+..+|++... +.+..............+.+- ..+..|++-..+|.|+++.+...+.+.............
T Consensus 233 Se~~irv~~~~----~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~ 308 (395)
T PF08596_consen 233 SESDIRVFKPP----KSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRR 308 (395)
T ss_dssp -SSEEEEE-TT-------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHH
T ss_pred cccceEEEeCC----CCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccc
Confidence 46789999986 445444433222222334442 356778888899999999999988876654322211122
Q ss_pred ceeeeCCCCCCcc
Q 015438 365 YRWMDYPPQARDL 377 (407)
Q Consensus 365 v~~~~~~~~~~~l 377 (407)
+....++++|.++
T Consensus 309 ~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 309 LSSSSISRNGDIF 321 (395)
T ss_dssp HTT-EE-TTS-EE
T ss_pred ccccEECCCCCEE
Confidence 2334445555544
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=5.9e-05 Score=72.38 Aligned_cols=194 Identities=14% Similarity=0.159 Sum_probs=121.3
Q ss_pred EECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCcccc-EEEEEEeCCCCEEEEeeCCC-----
Q 015438 176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG-IFSLKFSTDGRELVAGSSDD----- 249 (407)
Q Consensus 176 ~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg----- 249 (407)
+|++.+..++.|+.+|.|.+++-.-.. ..-+. .+... |..+....+..+|++.+.|+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~~-~~~fq----------------a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~ 92 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQL-IRGFQ----------------AYEQSIVQFLYILNKQNFLFSVGEDEQGNPV 92 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccccee-eehhe----------------ecchhhhhHhhcccCceEEEEEeecCCCCce
Confidence 467889999999999998887643211 11111 11112 33333333445777766654
Q ss_pred eEEEEEcCCC------eee--eeeec-----cCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeecccc
Q 015438 250 CIYVYDLEAN------KLS--LRILA-----HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (407)
Q Consensus 250 ~i~i~d~~~~------~~~--~~~~~-----~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 316 (407)
.|++||++.. +++ ..+.. ...++.+++++ .+-+.+|+|-.+|.|..+.-.-....+....-...-.
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs-~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~ 171 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS-EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK 171 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE-ccccEEEEEecCcEEEEEcCcchhccccceeeeccCC
Confidence 5999998643 223 11222 35678899998 7788999999999999986431111222222222345
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCCcceEEEeC
Q 015438 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390 (407)
Q Consensus 317 ~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~~~g 390 (407)
.+||++++..++..++....-..|.+|.+....+.... ...++.++.+.+|++...-+.++.+..+..|+.
T Consensus 172 ~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~---ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~s 242 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKV---LDNNGISLNCSSFSDGTYQFICAGSEFLYFYDS 242 (933)
T ss_pred CCceeeEEecCCceeEEEEecceeEEEEecCCCcceee---eccCCccceeeecCCCCccEEEecCceEEEEcC
Confidence 68999999988887444444567999999854422111 456777888888888766555666666666653
No 325
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.20 E-value=0.00055 Score=62.63 Aligned_cols=246 Identities=10% Similarity=0.068 Sum_probs=121.9
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeecccc--------------ceEEEEEEECCCCCeEEEEeC
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL--------------RWTVTDTSLSPDQRHLVYASM 189 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------------~~~v~~~~~sp~~~~l~~~~~ 189 (407)
...+....|||+|+.+|... ++.|.+++..++...+........ -..-..+.||||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788999999999999884 688999998777333221111000 011346789999999998654
Q ss_pred C-CeEEEE---ECCCCce----ecccccc---ccccceee-------------eec-CCCCccccEEEEEEeCCCCEEEE
Q 015438 190 S-PIVHIV---DVGSGTM----ESLANVT---EIHDGLDF-------------SAA-DDGGYSFGIFSLKFSTDGRELVA 244 (407)
Q Consensus 190 d-g~i~vw---d~~~~~~----~~~~~~~---~~~~~~~~-------------~~~-~~~~~~~~v~~~~~s~~~~~l~~ 244 (407)
| ..|..+ +...... ....+.. .......+ ... .......-+..+.|.++++.|++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 3 222222 2221110 0000000 00000000 000 00012335788999999984444
Q ss_pred eeCC-----CeEEEEEcCCCeeeeeeec-cCCC---eEEEEec-CCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeecc
Q 015438 245 GSSD-----DCIYVYDLEANKLSLRILA-HTSD---VNTVCFG-DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG 314 (407)
Q Consensus 245 ~~~d-----g~i~i~d~~~~~~~~~~~~-~~~~---v~~i~~s-~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 314 (407)
.-.+ ..+.++|..++.....+.. ..+. -..+.+. +.+..++.....+|.-+||-+.. .+.....+..
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~---~~~~~~~lT~ 277 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL---DGGKPRQLTS 277 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET---TSSEEEESS-
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc---cccceecccc
Confidence 3322 2477888877654333321 2222 2245553 56666777777888666655441 3444455554
Q ss_pred ccCCeEE-EEecCCCCEEE-EEeCC--Cc--EEEEECCCCCCcccccCCCccccccceeeeCCCCCCcc
Q 015438 315 HLEGITF-IDSRGDGRYLI-SNGKD--QA--IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 377 (407)
Q Consensus 315 ~~~~i~~-~~~s~~~~~l~-s~~~d--g~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 377 (407)
..-.|+. +.++++++.|. ++..+ +. |..-++.....+..+......+ ....|||+++++
T Consensus 278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~----~~~~~Spdg~y~ 342 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH----YSASFSPDGKYY 342 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT----EEEEE-TTSSEE
T ss_pred CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc----eEEEECCCCCEE
Confidence 5556755 66888876654 45442 23 4444555111221111111111 466788887665
No 326
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.3e-05 Score=69.65 Aligned_cols=211 Identities=14% Similarity=0.052 Sum_probs=141.4
Q ss_pred ccccCCCceEEEEECCCCCEEEEEeC-CCeEEEEEcCCCeEEeE--eeeccccceEEEEEEECCCC--CeEEEE-eCCCe
Q 015438 119 PVDQTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQK--DILAKSLRWTVTDTSLSPDQ--RHLVYA-SMSPI 192 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~sp~~--~~l~~~-~~dg~ 192 (407)
.+..|.+.|.+++.+-+|.++.+++. |..++++|+++-..+.- ....++ .+ ++..+|.. ..|+++ -.++.
T Consensus 48 hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg---~a-~wv~skGd~~s~IAVs~~~sg~ 123 (558)
T KOG0882|consen 48 HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG---FA-EWVTSKGDKISLIAVSLFKSGK 123 (558)
T ss_pred hhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC---ce-EEecCCCCeeeeEEeecccCCC
Confidence 44578888999999999999999777 99999999987533211 111222 11 12223321 134433 46789
Q ss_pred EEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCC------Ceee----
Q 015438 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA------NKLS---- 262 (407)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~------~~~~---- 262 (407)
+.|+|-....+..... ..-|..+|.++.+++.+..+++....|.|.-|.... .+..
T Consensus 124 i~VvD~~~d~~q~~~f--------------kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K 189 (558)
T KOG0882|consen 124 IFVVDGFGDFCQDGYF--------------KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELK 189 (558)
T ss_pred cEEECCcCCcCcccee--------------cccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccccc
Confidence 9999976554322111 123667899999999999999999999999998873 1111
Q ss_pred -----eeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeec------------------------
Q 015438 263 -----LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM------------------------ 313 (407)
Q Consensus 263 -----~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~------------------------ 313 (407)
..+........++.|+ +++..+.+-+.|..|++++++ .++.++.+.
T Consensus 190 ~eTdLy~f~K~Kt~pts~Efs-p~g~qistl~~DrkVR~F~~K----tGklvqeiDE~~t~~~~q~ks~y~l~~VelgRR 264 (558)
T KOG0882|consen 190 HETDLYGFPKAKTEPTSFEFS-PDGAQISTLNPDRKVRGFVFK----TGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRR 264 (558)
T ss_pred ccchhhcccccccCccceEEc-cccCcccccCcccEEEEEEec----cchhhhhhhccchhhhhccccccccceeehhhh
Confidence 1112234567899998 888899999999999999997 333332221
Q ss_pred --------cccC-CeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCccc
Q 015438 314 --------GHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (407)
Q Consensus 314 --------~~~~-~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (407)
.|.. .-+.+.|...|++|+-++-=| |++.++.+......
T Consensus 265 maverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 265 MAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred hhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence 1222 235677999999999887544 88899888766543
No 327
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.17 E-value=0.00011 Score=68.01 Aligned_cols=194 Identities=19% Similarity=0.192 Sum_probs=117.9
Q ss_pred CCcccccCCCceEEEEECCCCCEEEEE---eCC-CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEe-CC
Q 015438 116 GPWPVDQTTSRAYVSQFSADGSLFVAG---FQA-SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MS 190 (407)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~~~~~l~~~---~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d 190 (407)
....+..-...+..-+|+|+++.++.. ... ..+.++++.++...... ...+ .-...+|+|||+.|+.+. .|
T Consensus 184 ~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~-~~~g---~~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 184 NQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL-NFNG---NNGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred ceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee-ccCC---ccCCccCCCCCCEEEEEECCC
Confidence 334444556677778999999876644 222 46999999987443322 2223 244578999999988764 55
Q ss_pred C--eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC-C--eEEEEEcCCCeeeeee
Q 015438 191 P--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLRI 265 (407)
Q Consensus 191 g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~ 265 (407)
| .|+++|+.++....+..... .-..-.|+|||+.|+..+.. | .|+++|++.... ..+
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~g-----------------i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~ri 321 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGFG-----------------INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRL 321 (425)
T ss_pred CCccEEEEcCCCCcceecccCCc-----------------cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEe
Confidence 5 56777777666333211111 11256799999988877643 3 588888886665 333
Q ss_pred eccCCCeEEEEecCCCCCEEEEEeC-CCc--EEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCC
Q 015438 266 LAHTSDVNTVCFGDESGHLIYSGSD-DNL--CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (407)
Q Consensus 266 ~~~~~~v~~i~~s~~~~~~l~s~~~-d~~--i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d 337 (407)
....+.-..-.|+ ++|++|+..+. +|. |.+.|+. .+.....+. ........+|.++|+.++..+..
T Consensus 322 T~~~~~~~~p~~S-pdG~~i~~~~~~~g~~~i~~~~~~----~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 322 TFSGGGNSNPVWS-PDGDKIVFESSSGGQWDIDKNDLA----SGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred eccCCCCcCccCC-CCCCEEEEEeccCCceeeEEeccC----CCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence 3333333377888 78888777664 344 5566664 222233332 33334456688888877765543
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.17 E-value=0.00024 Score=67.36 Aligned_cols=187 Identities=13% Similarity=0.051 Sum_probs=113.1
Q ss_pred ECCCCCEEEEE-eCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC----eEEEEECCCCceecc
Q 015438 132 FSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----IVHIVDVGSGTMESL 206 (407)
Q Consensus 132 ~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg----~i~vwd~~~~~~~~~ 206 (407)
++|||+.+... -..+.+.++|.++.+......... ....+.++|+++++++.+.+. .+...+.........
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg----npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG----NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC----CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 45566654322 234667788887754444433322 245678999999998876322 333333322211111
Q ss_pred ccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCC-----CeeeeeeeccCCCeEEEEecCCC
Q 015438 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----NKLSLRILAHTSDVNTVCFGDES 281 (407)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~v~~i~~s~~~ 281 (407)
+.... .-++.++|++...+ ++.|.+.|.++ .+.+..+. -......+.++ ++
T Consensus 276 fni~~--------------------iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vS-PD 331 (635)
T PRK02888 276 FNIAR--------------------IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTS-PD 331 (635)
T ss_pred EchHH--------------------HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEEC-CC
Confidence 11100 01344578876663 67899999998 34555554 45567889998 77
Q ss_pred CCEEEEEe-CCCcEEEEeCcccCC--------CCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 015438 282 GHLIYSGS-DDNLCKVWDRRCLNV--------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 282 ~~~l~s~~-~d~~i~vwd~~~~~~--------~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 347 (407)
|+++++++ .+.+|.|.|+...+. ....+....- .......+|+++|+...|---|..|..||+.+
T Consensus 332 GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 332 GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 77666555 589999999973210 0111222221 23445678999998888888899999999886
No 329
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=2.7e-06 Score=81.39 Aligned_cols=145 Identities=14% Similarity=0.193 Sum_probs=114.6
Q ss_pred ccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCC-C-cEEEEeCcccC
Q 015438 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD-N-LCKVWDRRCLN 303 (407)
Q Consensus 226 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d-~-~i~vwd~~~~~ 303 (407)
+....+|++|+.+.+.|++|+..|.|++|++.+|.-.....+|.++|+-+.-+ .+|..+++.+.- . ..-+|++..
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs-~dgs~~Ltsss~S~PlsaLW~~~s-- 1176 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPS-VDGSTQLTSSSSSSPLSALWDASS-- 1176 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccccccccccc-CCcceeeeeccccCchHHHhcccc--
Confidence 55678999999999999999999999999999999888899999999999987 777777666543 2 578899872
Q ss_pred CCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccC
Q 015438 304 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 378 (407)
Q Consensus 304 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 378 (407)
.+.+..++.+ -.++.|+.....-+.|+......+||+.+..++.++..+.......-.+..|+|+..++.
T Consensus 1177 -~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1177 -TGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred -ccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 4556666543 346788876655566777778999999999998887665555555567888999876654
No 330
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.14 E-value=0.0032 Score=52.53 Aligned_cols=139 Identities=16% Similarity=0.123 Sum_probs=94.3
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccc
Q 015438 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (407)
Q Consensus 136 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 215 (407)
..+++.|+..+.+.-.|..+|....+.+... .+-+-+.- -|++++.|...|.+++.+.+++.....+...+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~----RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v-- 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV----RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV-- 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc----eeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh--
Confidence 4677888889999999999986665543322 22222211 4677999999999999999999654444332211
Q ss_pred eeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 015438 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 295 (407)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~ 295 (407)
. ......+++..|..|+.|++.+..|.++..++.+.+...+...+-+..|.++.+.++ ...|.+.
T Consensus 96 -------------k-~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a-~t~G~vl 160 (354)
T KOG4649|consen 96 -------------K-VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA-ITAGAVL 160 (354)
T ss_pred -------------c-cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE-eccceEE
Confidence 1 123456789999999999999999999999888876655555556665445554444 3444443
Q ss_pred E
Q 015438 296 V 296 (407)
Q Consensus 296 v 296 (407)
-
T Consensus 161 a 161 (354)
T KOG4649|consen 161 A 161 (354)
T ss_pred E
Confidence 3
No 331
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.10 E-value=0.003 Score=58.80 Aligned_cols=200 Identities=13% Similarity=0.086 Sum_probs=103.5
Q ss_pred EEEECCCCCEEEEEeCC----------C-eEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEE
Q 015438 129 VSQFSADGSLFVAGFQA----------S-QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (407)
Q Consensus 129 ~~~~s~~~~~l~~~~~d----------g-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd 197 (407)
.++.+|.|-.+|....+ . .|+||+.. |..+....... +.+.++.|+.+.+ |+.-..||.++++|
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~---~~iv~~~wt~~e~-LvvV~~dG~v~vy~ 107 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDS---GRIVGMGWTDDEE-LVVVQSDGTVRVYD 107 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECC---CCEEEEEECCCCe-EEEEEcCCEEEEEe
Confidence 44666666666655333 1 59999975 44555533332 4799999988655 55556899999999
Q ss_pred CCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCe-eeeeee---c-----c
Q 015438 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRIL---A-----H 268 (407)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~---~-----~ 268 (407)
+.... .+.+...... .+-....+....+..+| +++-..++.+++..--... ....+. . +
T Consensus 108 ~~G~~---~fsl~~~i~~-------~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~ 175 (410)
T PF04841_consen 108 LFGEF---QFSLGEEIEE-------EKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFH 175 (410)
T ss_pred CCCce---eechhhhccc-------cCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccc
Confidence 86333 1111110000 00001122333343355 3333344555544332221 111111 0 0
Q ss_pred C-CCeEE-EEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 015438 269 T-SDVNT-VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (407)
Q Consensus 269 ~-~~v~~-i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~ 346 (407)
. ..... ..++ .+....+....++.+.+.+-. ..+. +. ..+++..++.||+|++||.-..+|.+.+.+..
T Consensus 176 ~~~~~~~i~~l~-~~~~~~i~~~~g~~i~~i~~~----~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 176 WWPSWTVIPLLS-SDRVVEILLANGETIYIIDEN----SFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred cccccccceEee-cCcceEEEEecCCEEEEEEcc----cccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 0 00111 1232 334444444555566644432 1111 21 24589999999999999999999999998865
Q ss_pred CCCCcccc
Q 015438 347 KMSSNASC 354 (407)
Q Consensus 347 ~~~~~~~~ 354 (407)
-.+....+
T Consensus 247 f~~~~~e~ 254 (410)
T PF04841_consen 247 FSEKLCEF 254 (410)
T ss_pred ccceeEEe
Confidence 44444333
No 332
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.07 E-value=8.1e-07 Score=81.97 Aligned_cols=164 Identities=15% Similarity=0.142 Sum_probs=109.4
Q ss_pred ccccCCCceEEEEECC-CCCEEEEEeC----CCeEEEEEcCCC--eEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC
Q 015438 119 PVDQTTSRAYVSQFSA-DGSLFVAGFQ----ASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~-~~~~l~~~~~----dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 191 (407)
...+|....++++|++ |.+.||+|-. |..+.|||+.++ .+........+......+++|-.+.+++.+|....
T Consensus 97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr 176 (783)
T KOG1008|consen 97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR 176 (783)
T ss_pred ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccc
Confidence 4457788999999998 4566776632 567999999876 22221111112223456788888889999999988
Q ss_pred eEEEEECCCCce-eccccccccccceeeeecCCCCccccEEEEEEeC-CCCEEEEeeCCCeEEEEE-cCCC-eeeeeeec
Q 015438 192 IVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYD-LEAN-KLSLRILA 267 (407)
Q Consensus 192 ~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d-~~~~-~~~~~~~~ 267 (407)
.+.++|++.... ...+. +..+..+..+| .+.++++-. ||.|.+|| .+.- .++..+..
T Consensus 177 ~~~ifdlRqs~~~~~svn------------------Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~ 237 (783)
T KOG1008|consen 177 SVHIFDLRQSLDSVSSVN------------------TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILR 237 (783)
T ss_pred hhhhhhhhhhhhhhhhhh------------------hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhh
Confidence 999999973321 11111 11355677788 677777665 99999999 3332 23333322
Q ss_pred cC----CCeEEEEecCCCCCEEEEEeCC-CcEEEEeCcc
Q 015438 268 HT----SDVNTVCFGDESGHLIYSGSDD-NLCKVWDRRC 301 (407)
Q Consensus 268 ~~----~~v~~i~~s~~~~~~l~s~~~d-~~i~vwd~~~ 301 (407)
.. ..+..++|+|....++++.+.| ++|++||+..
T Consensus 238 ~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 238 NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 22 2489999998777788888766 7999999873
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.06 E-value=0.00045 Score=64.38 Aligned_cols=180 Identities=17% Similarity=0.094 Sum_probs=95.9
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCcee
Q 015438 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (407)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~ 204 (407)
.....+.++|+|++++++ .+|.-.||.....+.. ..+.-..+.|.+.++ +|+-..+..|.|+.--.....
T Consensus 33 ~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k--------~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNK--------AFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp S--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEE--------EEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT
T ss_pred cCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccc--------ccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccc
Confidence 346789999999999885 5788888884433111 112356688988555 666666788999632222111
Q ss_pred ccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCE
Q 015438 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284 (407)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~ 284 (407)
..+.... .+..|-. |.+|+..+.+ .|.+||..+++.+..+... +|..+.|+ +++++
T Consensus 103 k~i~~~~-----------------~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws-~~g~~ 158 (443)
T PF04053_consen 103 KSIKLPF-----------------SVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS-DDGEL 158 (443)
T ss_dssp -----SS------------------EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE--TTSSE
T ss_pred eEEcCCc-----------------ccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE-CCCCE
Confidence 1111110 2333322 8777777655 8999999999999988533 48999998 88899
Q ss_pred EEEEeCCCcEEEEeCccc-----CCCC--ceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEE
Q 015438 285 IYSGSDDNLCKVWDRRCL-----NVKG--KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 342 (407)
Q Consensus 285 l~s~~~d~~i~vwd~~~~-----~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~i 342 (407)
++..+.+ .+.+++.... ...| .....+......|.+.+|..+ .++-.+.. .|+-
T Consensus 159 val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 159 VALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp EEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred EEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 8888755 7888776411 0000 133444333567888888665 34433333 5555
No 334
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.05 E-value=0.0013 Score=56.10 Aligned_cols=203 Identities=8% Similarity=0.109 Sum_probs=107.3
Q ss_pred ccceEEEEEEECCCCC-eEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEe
Q 015438 167 SLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (407)
Q Consensus 167 ~~~~~v~~~~~sp~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 245 (407)
+....+..++|.|+.+ ++++....+.|..++.+ ++......+... +..-.|++..++.++++-
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~---------------~D~EgI~y~g~~~~vl~~ 82 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGF---------------GDYEGITYLGNGRYVLSE 82 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS----------------SSEEEEEE-STTEEEEEE
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCC---------------CCceeEEEECCCEEEEEE
Confidence 3344599999999755 56666778888888874 555544443321 146678888777766666
Q ss_pred eCCCeEEEEEcCCCe------eeeeee-----ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCcee--eee
Q 015438 246 SSDDCIYVYDLEANK------LSLRIL-----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA--GVL 312 (407)
Q Consensus 246 ~~dg~i~i~d~~~~~------~~~~~~-----~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~ 312 (407)
-.++.+.++++.... ....+. .+...+..++|. +.++.|+.+-...-..+|.++... ....+ ...
T Consensus 83 Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D-~~~~~L~v~kE~~P~~l~~~~~~~-~~~~~~~~~~ 160 (248)
T PF06977_consen 83 ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD-PKTNRLFVAKERKPKRLYEVNGFP-GGFDLFVSDD 160 (248)
T ss_dssp TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEE-TTTTEEEEEEESSSEEEEEEESTT--SS--EEEE-
T ss_pred cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEc-CCCCEEEEEeCCCChhhEEEcccc-Cccceeeccc
Confidence 568999999984321 111221 245568999998 554555556666566677665211 01111 111
Q ss_pred ------ccccCCeEEEEecCC-CCEEEEEeCCCcEEEEECCCCCCcccccCCCc-----cccccceeeeCCCCCCccCCC
Q 015438 313 ------MGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFR-----SYEWDYRWMDYPPQARDLKHP 380 (407)
Q Consensus 313 ------~~~~~~i~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~ 380 (407)
......+.+++++|. +++++.+..+..|..+| .+++.+........ ......--++|.++|.+..++
T Consensus 161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 112345788999985 56677777888899999 55555444332221 223445678888988877666
Q ss_pred CCcceEEE
Q 015438 381 CDQSVATY 388 (407)
Q Consensus 381 ~~~~v~~~ 388 (407)
--+...+|
T Consensus 240 EpNlfy~f 247 (248)
T PF06977_consen 240 EPNLFYRF 247 (248)
T ss_dssp TTTEEEEE
T ss_pred CCceEEEe
Confidence 55544444
No 335
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.05 E-value=0.00051 Score=64.00 Aligned_cols=197 Identities=13% Similarity=0.050 Sum_probs=111.8
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC--CCCeEEEEeCCCeEEEEECCCCceeccccccccc
Q 015438 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 213 (407)
Q Consensus 136 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 213 (407)
+..++++..++.|..+|..+|+.+.......... .+.. .-+| .+..++.++.+|.+..+|..+++..-........
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~-~~~~-~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~ 237 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL-TLRG-ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPT 237 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc-cccC-CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence 3456667778889999998887665543221100 0000 0112 1335667778899999999888754322211100
Q ss_pred cceeeeecCCCCccccEEEEEEeC--CCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCC
Q 015438 214 DGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD 291 (407)
Q Consensus 214 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d 291 (407)
... .......+.-+| .+..+++++.+|.++.+|..+++.+-+... .....+.. .+..++.++.+
T Consensus 238 ~~~---------~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~---~~~~vy~~~~~ 303 (394)
T PRK11138 238 GAT---------EIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV---DGGRIYLVDQN 303 (394)
T ss_pred Ccc---------chhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE---ECCEEEEEcCC
Confidence 000 000001111122 245677778899999999999986544321 12222333 35567778889
Q ss_pred CcEEEEeCcccCCCCceeeeeccccC-CeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccc
Q 015438 292 NLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 292 ~~i~vwd~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (407)
|.+..+|.. +++.+-....... ...+... .+..|+.++.||.|.+.|..+++.+...
T Consensus 304 g~l~ald~~----tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 304 DRVYALDTR----GGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred CeEEEEECC----CCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 999999997 6665433221111 1122222 2557888899999999999998766543
No 336
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.00027 Score=65.60 Aligned_cols=156 Identities=22% Similarity=0.237 Sum_probs=99.3
Q ss_pred eEEEEEEECCCCCeEEEEe---CC-CeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEe
Q 015438 170 WTVTDTSLSPDQRHLVYAS---MS-PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (407)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~---~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 245 (407)
..+..-.|+|+++.++... .. ..+.+++++++....+..... .-...+|+|||+.|+..
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g-----------------~~~~P~fspDG~~l~f~ 255 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG-----------------NNGAPAFSPDGSKLAFS 255 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC-----------------ccCCccCCCCCCEEEEE
Confidence 3577789999999877653 22 469999999887655544221 23346899999877665
Q ss_pred e-CCC--eEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEe-CCCc--EEEEeCcccCCCCceeeeeccccCCe
Q 015438 246 S-SDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNL--CKVWDRRCLNVKGKPAGVLMGHLEGI 319 (407)
Q Consensus 246 ~-~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~-~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~i 319 (407)
. .|| .|+++|+.++.. ..+....+.-..-.|+ ++|+.++-.+ ..|. |.++|.. +.....+......-
T Consensus 256 ~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~s-pdG~~ivf~Sdr~G~p~I~~~~~~-----g~~~~riT~~~~~~ 328 (425)
T COG0823 256 SSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWS-PDGSKIVFTSDRGGRPQIYLYDLE-----GSQVTRLTFSGGGN 328 (425)
T ss_pred ECCCCCccEEEEcCCCCcc-eecccCCccccCccCC-CCCCEEEEEeCCCCCcceEEECCC-----CCceeEeeccCCCC
Confidence 4 444 478888887763 4455555555577898 6666665544 4554 5555553 33334443333333
Q ss_pred EEEEecCCCCEEEEEeCC-Cc--EEEEECCCCC
Q 015438 320 TFIDSRGDGRYLISNGKD-QA--IKLWDIRKMS 349 (407)
Q Consensus 320 ~~~~~s~~~~~l~s~~~d-g~--i~iwd~~~~~ 349 (407)
....|+|||++|+..+.. |. |.+.|+.+..
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 367799999999877743 44 6666665544
No 337
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.01 E-value=0.0015 Score=60.89 Aligned_cols=179 Identities=11% Similarity=0.084 Sum_probs=108.8
Q ss_pred EEEEEeCCCeEEEEEcCCCeEEeEeeecccc-ce---EEEEEEECC--CCCeEEEEeCCCeEEEEECCCCceeccccccc
Q 015438 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSL-RW---TVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTE 211 (407)
Q Consensus 138 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~---~v~~~~~sp--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 211 (407)
.++.++.+|.+..+|..+|+........... .. ....+.-+| .+..+++++.+|.+..+|..+++..-.....
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~- 285 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG- 285 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC-
Confidence 4666778899999999888655442211100 00 011111223 3456777778999999999988754322110
Q ss_pred cccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccC-CCeEEEEecCCCCCEEEEEeC
Q 015438 212 IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-SDVNTVCFGDESGHLIYSGSD 290 (407)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~i~~s~~~~~~l~s~~~ 290 (407)
....+. ..+..|++++.+|.++.+|..+++.+-...... ....+..+ .+..++.++.
T Consensus 286 -----------------~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~ 343 (394)
T PRK11138 286 -----------------SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDS 343 (394)
T ss_pred -----------------CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeC
Confidence 011122 245678888899999999999987654332111 11222233 2457788899
Q ss_pred CCcEEEEeCcccCCCCceeeeeccccCCeE-EEEecCCCCEEEEEeCCCcEEEEEC
Q 015438 291 DNLCKVWDRRCLNVKGKPAGVLMGHLEGIT-FIDSRGDGRYLISNGKDQAIKLWDI 345 (407)
Q Consensus 291 d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~s~~~dg~i~iwd~ 345 (407)
+|.|.+.|.. +++.+....-....+. ...+ .+..|+.++.||.|..+++
T Consensus 344 ~G~l~~ld~~----tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 344 EGYLHWINRE----DGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEECC----CCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 9999999998 7877766643323332 2222 2457888899999988764
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.97 E-value=0.0011 Score=63.03 Aligned_cols=183 Identities=13% Similarity=0.045 Sum_probs=106.3
Q ss_pred ceEEEEECCCCCEEEEEeCC----CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCC-
Q 015438 126 RAYVSQFSADGSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS- 200 (407)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~- 200 (407)
....++++|+|+++++.+.+ ..+...+......... ..... ..++.++|++...+ ++.|.+.|..+
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv-fni~~------iea~vkdGK~~~V~--gn~V~VID~~t~ 306 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV-FNIAR------IEEAVKAGKFKTIG--GSKVPVVDGRKA 306 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE-EchHH------HHHhhhCCCEEEEC--CCEEEEEECCcc
Confidence 34567889999998877632 2233333222110000 00000 01334578776663 57899999887
Q ss_pred ----CceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEee-CCCeEEEEEcCCCee------------ee
Q 015438 201 ----GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKL------------SL 263 (407)
Q Consensus 201 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~------------~~ 263 (407)
........... ....+.++|||+++++++ .+.+|.|+|+.+.+. +.
T Consensus 307 ~~~~~~v~~yIPVGK-----------------sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva 369 (635)
T PRK02888 307 ANAGSALTRYVPVPK-----------------NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA 369 (635)
T ss_pred ccCCcceEEEEECCC-----------------CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence 23333322222 456789999999877765 488999999987552 33
Q ss_pred eeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcc----c--CCCCceeeeeccccCCeEE-----EEecCCCCEEE
Q 015438 264 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC----L--NVKGKPAGVLMGHLEGITF-----IDSRGDGRYLI 332 (407)
Q Consensus 264 ~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~----~--~~~~~~~~~~~~~~~~i~~-----~~~s~~~~~l~ 332 (407)
......++ ...+|. .+|+...+-..|..|..||+.. + +.....+..+.-|-.+-.- =.-.|||+||+
T Consensus 370 evevGlGP-LHTaFD-g~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~ 447 (635)
T PRK02888 370 EPELGLGP-LHTAFD-GRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLV 447 (635)
T ss_pred eeccCCCc-ceEEEC-CCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEE
Confidence 33333333 456885 7888888888999999999862 0 0002233334333332211 12367889988
Q ss_pred EEeC
Q 015438 333 SNGK 336 (407)
Q Consensus 333 s~~~ 336 (407)
+...
T Consensus 448 ~~nk 451 (635)
T PRK02888 448 SLNK 451 (635)
T ss_pred Eccc
Confidence 8753
No 339
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.97 E-value=0.0084 Score=56.33 Aligned_cols=202 Identities=20% Similarity=0.203 Sum_probs=109.2
Q ss_pred ceEEEEECCCCCEEEEE-eCCC----eEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC---------
Q 015438 126 RAYVSQFSADGSLFVAG-FQAS----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--------- 191 (407)
Q Consensus 126 ~v~~~~~s~~~~~l~~~-~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg--------- 191 (407)
.+...++||+|+++|.+ +..| .|+++|+.+++.+...+... ....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~----~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP----KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE----ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc----ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 34467899999998865 3333 49999999996554432221 123499999988887765332
Q ss_pred --eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC---C-CeEEEEEcCCC----ee
Q 015438 192 --IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---D-DCIYVYDLEAN----KL 261 (407)
Q Consensus 192 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d-g~i~i~d~~~~----~~ 261 (407)
.|+.|.+.+.......-.... ........+..++++++|+.... + ..+++.|+..+ ..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~------------~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~ 268 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEP------------DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAK 268 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-T------------TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-S
T ss_pred CcEEEEEECCCChHhCeeEEeec------------CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCC
Confidence 477888776644311111110 11112567889999998776432 2 45888898874 23
Q ss_pred eeeeeccCCCe-EEEEecCCCCCEEEEEeC---CCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEE-eC
Q 015438 262 SLRILAHTSDV-NTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GK 336 (407)
Q Consensus 262 ~~~~~~~~~~v-~~i~~s~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~ 336 (407)
...+......+ ..+... .+.+++.... .+.|.-.++..... ......+..+...+.-..+...+.+|+.. -.
T Consensus 269 ~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~-~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~ 345 (414)
T PF02897_consen 269 PKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSP-AEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE 345 (414)
T ss_dssp EEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSG-GGEEEEEE--SSSEEEEEEEEETTEEEEEEEE
T ss_pred cEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccccccc-ccceeEEcCCCCceeEEEEEEECCEEEEEEEE
Confidence 33343334344 344443 4444444432 35677777763211 11222455555543333333345555544 44
Q ss_pred CC--cEEEEECC
Q 015438 337 DQ--AIKLWDIR 346 (407)
Q Consensus 337 dg--~i~iwd~~ 346 (407)
++ .|+++++.
T Consensus 346 ~~~~~l~v~~~~ 357 (414)
T PF02897_consen 346 NGSSRLRVYDLD 357 (414)
T ss_dssp TTEEEEEEEETT
T ss_pred CCccEEEEEECC
Confidence 44 48889988
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.00032 Score=67.46 Aligned_cols=74 Identities=9% Similarity=0.065 Sum_probs=61.5
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 015438 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (407)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~ 199 (407)
..-.+.+++|+|..-.|+.|-.-|.+.+|...+.+. + .....|..+|..+.|||+|..++++..-|.+.+|...
T Consensus 58 ~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-h--tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 58 YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-H--TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cceehhhhccChHHHHHhhccccceeEEEecCCcee-e--eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 344567799999998999999999999999876422 2 2344577789999999999999999999999999876
No 341
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=6e-05 Score=66.11 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=79.1
Q ss_pred EEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCC-C
Q 015438 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-R 329 (407)
Q Consensus 251 i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~ 329 (407)
|++.+..+.+....+..+...|..++|+|....++..++.+.+|+|.|++ +...+..+..+ ..+.+++|.-|. +
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle----t~~~vssy~a~-~~~wSC~wDlde~h 249 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE----TSCVVSSYIAY-NQIWSCCWDLDERH 249 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecc----cceeeeheecc-CCceeeeeccCCcc
Confidence 67777766666666778888999999997776689999999999999998 77777777777 789999998765 5
Q ss_pred EEEEEeCCCcEEEEECCCCCCc
Q 015438 330 YLISNGKDQAIKLWDIRKMSSN 351 (407)
Q Consensus 330 ~l~s~~~dg~i~iwd~~~~~~~ 351 (407)
+|..|-..|.|.|||++..+..
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPEGP 271 (463)
T ss_pred eeEEeccCceEEEEEccCCCch
Confidence 6677778999999999986543
No 342
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.87 E-value=0.0077 Score=51.45 Aligned_cols=180 Identities=13% Similarity=0.108 Sum_probs=117.8
Q ss_pred cccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 015438 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (407)
Q Consensus 120 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~ 199 (407)
+.+-...|.++.|+|+.+.|++......-.|+=...|+.+...... +. ...-.+.+..++++.++--.+..+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-GF-SDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-cc-CChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 4455566999999999999888877776666655566555543322 21 124557788888888888889999999887
Q ss_pred CCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeee---eecc-------C
Q 015438 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR---ILAH-------T 269 (407)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~-------~ 269 (407)
........... .+........+...-.++|+|..+.|+++-+..-+.||.......... ...+ -
T Consensus 159 ~~t~~~~~~~~------~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~ 232 (316)
T COG3204 159 ADTTVISAKVQ------KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV 232 (316)
T ss_pred CCccEEeccce------EEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe
Confidence 66433222211 111111111244677899999998888888777777776653321111 0111 2
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeee
Q 015438 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 312 (407)
Q Consensus 270 ~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 312 (407)
..|..+.|.+..+++|+-+..++.+.-.|.. +.++..+
T Consensus 233 ~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-----G~~~~~l 270 (316)
T COG3204 233 LDVSGLEFNAITNSLLVLSDESRRLLEVDLS-----GEVIELL 270 (316)
T ss_pred eccccceecCCCCcEEEEecCCceEEEEecC-----CCeeeeE
Confidence 3577889988899999999999999999984 5555444
No 343
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.86 E-value=0.0068 Score=53.48 Aligned_cols=222 Identities=18% Similarity=0.131 Sum_probs=123.5
Q ss_pred EEEEECCCCCEEEEEe----------CCCeEEEEEcCCCeEEeEeeeccccce----EEEEEEECCCCCeEEEEe--CCC
Q 015438 128 YVSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSLRW----TVTDTSLSPDQRHLVYAS--MSP 191 (407)
Q Consensus 128 ~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~----~v~~~~~sp~~~~l~~~~--~dg 191 (407)
-.+..+|+++.++++. ..-.|.+||..+-.....+.....+.. ....++++.|++++++.. -..
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3467899999888643 234699999998766665555543221 123457788998888764 345
Q ss_pred eEEEEECCCCceeccccccccccce-----eee-ecCC----------CCccccEE-------------EEEEeCCCCEE
Q 015438 192 IVHIVDVGSGTMESLANVTEIHDGL-----DFS-AADD----------GGYSFGIF-------------SLKFSTDGREL 242 (407)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~-----~~~-~~~~----------~~~~~~v~-------------~~~~s~~~~~l 242 (407)
.|.|.|+..++.........+.--. .|. .+.+ .|...... .-.+...+..+
T Consensus 119 SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~ 198 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRL 198 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEE
T ss_pred eEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeE
Confidence 7888888887765444333221100 000 0011 11111111 11222333445
Q ss_pred EEeeCCCeEEEEEcCCCeee--eeeec----------cCCCeEEEEecCCCCCEEEEEe-------CCC--cEEEEeCcc
Q 015438 243 VAGSSDDCIYVYDLEANKLS--LRILA----------HTSDVNTVCFGDESGHLIYSGS-------DDN--LCKVWDRRC 301 (407)
Q Consensus 243 ~~~~~dg~i~i~d~~~~~~~--~~~~~----------~~~~v~~i~~s~~~~~~l~s~~-------~d~--~i~vwd~~~ 301 (407)
+.-+.+|.|+-.|+...... ..+.. -.+.-.-++++++.+++++.-. .|+ .|-++|+.
T Consensus 199 ~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~- 277 (342)
T PF06433_consen 199 YFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK- 277 (342)
T ss_dssp EEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT-
T ss_pred EEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC-
Confidence 55677888888887655421 11110 1233445788755555554322 122 47778887
Q ss_pred cCCCCceeeeeccccCCeEEEEecCCCC-EEEEE-eCCCcEEEEECCCCCCcccc
Q 015438 302 LNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISN-GKDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~ 354 (407)
+++.+..+.- ..++.+|+.+.+.+ +|++. ..++.+.+||..+++.+.+.
T Consensus 278 ---t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 278 ---THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp ---TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred ---CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 7788877752 34577899988765 55544 46899999999998876554
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.86 E-value=0.00035 Score=68.73 Aligned_cols=144 Identities=16% Similarity=0.183 Sum_probs=99.8
Q ss_pred CCCEEEEe-eCCCeEEEEEcCCCeeeeeeeccCCC-eEEEEec----CCCCCEEEEEeCCCcEEEEeCcccCCCCceeee
Q 015438 238 DGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSD-VNTVCFG----DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 311 (407)
Q Consensus 238 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~i~~s----~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 311 (407)
+.++|+.. .....|+-.|++.|+.+..+..+... |..++-. .-++.-.+.|-.++.+..||.|. .+..+..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~---~~~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRL---SGNKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCC---CCCceee
Confidence 34444443 35578999999999999999877654 5555432 11234456777888999999993 2222211
Q ss_pred ec----cccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCCcceEE
Q 015438 312 LM----GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 387 (407)
Q Consensus 312 ~~----~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~~ 387 (407)
-. ......+|++-+.+| +||.|+.+|.||+|| +.++.-. ..+.+.+.+|..+..+.||+++.+.++..+.+
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AK---T~lp~lG~pI~~iDvt~DGkwilaTc~tyLlL 643 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAK---TALPGLGDPIIGIDVTADGKWILATCKTYLLL 643 (794)
T ss_pred ccccccccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhh---hcCCCCCCCeeEEEecCCCcEEEEeecceEEE
Confidence 11 123356777777776 699999999999999 3332222 22556778999999999999999999988877
Q ss_pred Ee
Q 015438 388 YK 389 (407)
Q Consensus 388 ~~ 389 (407)
+.
T Consensus 644 i~ 645 (794)
T PF08553_consen 644 ID 645 (794)
T ss_pred EE
Confidence 75
No 345
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.016 Score=53.52 Aligned_cols=202 Identities=11% Similarity=0.121 Sum_probs=133.9
Q ss_pred ceEEEEECCCCCE-EEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeC---CCeEEEEECCCC
Q 015438 126 RAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSG 201 (407)
Q Consensus 126 ~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---dg~i~vwd~~~~ 201 (407)
.-..++.++.+.. +++...++.|.+.|..+........... ....++++|+++.+.++.. ++.+.+.|..+.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~----~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL----GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc----CCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence 3457788888875 4445556899999977764444433322 3667899999988887655 688999988887
Q ss_pred ceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEee-CCCeEEEEEcCCCeeee-e----eeccCCCeEEE
Q 015438 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSL-R----ILAHTSDVNTV 275 (407)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~----~~~~~~~v~~i 275 (407)
.......... .+ ..++++|+|..+++.. .++.|.+.|........ . .. -......+
T Consensus 151 ~~~~~~~vG~----------------~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i 212 (381)
T COG3391 151 KVTATIPVGN----------------TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGI 212 (381)
T ss_pred eEEEEEecCC----------------Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceE
Confidence 7655422111 12 6789999999666654 68899999987665543 1 21 22234567
Q ss_pred EecCCCCCEEEEEeCC---CcEEEEeCcccCCCCceeeeeccccC-CeEEEEecCCCCEEEEEeC-CCcEEEEECCCCCC
Q 015438 276 CFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSS 350 (407)
Q Consensus 276 ~~s~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~ 350 (407)
.++ ++++.+...... +.+...|.. .+.....-..-.. ....+..+|+|.++.+... .+.+.+-|..+...
T Consensus 213 ~v~-~~g~~~yV~~~~~~~~~v~~id~~----~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 213 AVD-PDGNRVYVANDGSGSNNVLKIDTA----TGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred EEC-CCCCEEEEEeccCCCceEEEEeCC----CceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 886 677755544433 588888887 4444443111111 3567889999999888854 58899999888666
Q ss_pred cccc
Q 015438 351 NASC 354 (407)
Q Consensus 351 ~~~~ 354 (407)
....
T Consensus 288 ~~~~ 291 (381)
T COG3391 288 VKTG 291 (381)
T ss_pred eeee
Confidence 5543
No 346
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.80 E-value=0.0036 Score=60.78 Aligned_cols=193 Identities=12% Similarity=0.082 Sum_probs=102.9
Q ss_pred CceEEEEECCCCCEEEEEe------CCC--eEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCe-EEE
Q 015438 125 SRAYVSQFSADGSLFVAGF------QAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI-VHI 195 (407)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~-i~v 195 (407)
..+...+++|+|+.+|... .|. .|.+++.... .... .. +. ..+.-.|+|+|+.|++...... +++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~--~~~l-t~-g~--~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV--AVQV-LE-GH--SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc--ceee-ec-CC--CCCCceECCCCCceEEEecCcceEEE
Confidence 4678899999999988765 233 4555564322 2222 11 11 3778899999988887754322 222
Q ss_pred EECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEE---EEcCCCee-e---eeeec-
Q 015438 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV---YDLEANKL-S---LRILA- 267 (407)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i---~d~~~~~~-~---~~~~~- 267 (407)
.+-.............. .... .....|..+.|||||..|+... ++.|++ -....+.. + ..+..
T Consensus 424 ~~~~~~gql~~~~vd~g----e~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 424 IRDPATGQLARTPVDAS----AVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred eccCCCceEEEEeccCc----hhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 22211111110000000 0000 1123699999999999888766 577877 44444431 1 11222
Q ss_pred cCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeecc--ccCCeEEEEecCCCCEEEEEeCCCc
Q 015438 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISNGKDQA 339 (407)
Q Consensus 268 ~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~~~dg~ 339 (407)
-...+.++.|. .++.++ .+..++.-.+|.+.- .+.....+.+ ...++.+++-+++ .++....++.
T Consensus 495 l~~~~~~l~W~-~~~~L~-V~~~~~~~~v~~v~v---DG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 495 LGDTAVSLDWR-TGDSLV-VGRSDPEHPVWYVNL---DGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred cCCccccceEe-cCCEEE-EEecCCCCceEEEec---CCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence 23346889997 666654 555555555565431 2222222222 3567778877763 3555555663
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.80 E-value=0.00075 Score=62.88 Aligned_cols=141 Identities=18% Similarity=0.132 Sum_probs=80.2
Q ss_pred EEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCe
Q 015438 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (407)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 250 (407)
.+..+.++|++++++++ .+|...|+........ ..+.-....|.+.++ +|+-..++.
T Consensus 34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k---------------------~~G~g~~~vw~~~n~-yAv~~~~~~ 90 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNK---------------------AFGSGLSFVWSSRNR-YAVLESSST 90 (443)
T ss_dssp --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEE---------------------EEEE-SEEEE-TSSE-EEEE-TTS-
T ss_pred CCeeEEECCCCCEEEEE-cCCEEEEEEccCCccc---------------------ccCceeEEEEecCcc-EEEEECCCe
Confidence 46789999999999994 5677778873322211 112455688998554 666666888
Q ss_pred EEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCE
Q 015438 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (407)
Q Consensus 251 i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 330 (407)
|.++.--+.+....+.. ...+..|-. |.+|+..+.+ .|.+||.. +++.+..+... +|..+.|+++|.+
T Consensus 91 I~I~kn~~~~~~k~i~~-~~~~~~If~----G~LL~~~~~~-~i~~yDw~----~~~~i~~i~v~--~vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 91 IKIYKNFKNEVVKSIKL-PFSVEKIFG----GNLLGVKSSD-FICFYDWE----TGKLIRRIDVS--AVKYVIWSDDGEL 158 (443)
T ss_dssp EEEEETTEE-TT------SS-EEEEE-----SSSEEEEETT-EEEEE-TT----T--EEEEESS---E-EEEEE-TTSSE
T ss_pred EEEEEcCccccceEEcC-CcccceEEc----CcEEEEECCC-CEEEEEhh----HcceeeEEecC--CCcEEEEECCCCE
Confidence 99974333333334432 223444432 7777776655 89999998 88888888633 4899999999999
Q ss_pred EEEEeCCCcEEEEECCC
Q 015438 331 LISNGKDQAIKLWDIRK 347 (407)
Q Consensus 331 l~s~~~dg~i~iwd~~~ 347 (407)
++..+.+ .+.|++.+.
T Consensus 159 val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 159 VALVTKD-SIYILKYNL 174 (443)
T ss_dssp EEEE-S--SEEEEEE-H
T ss_pred EEEEeCC-eEEEEEecc
Confidence 9998855 677766543
No 348
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.79 E-value=0.0016 Score=64.25 Aligned_cols=143 Identities=17% Similarity=0.241 Sum_probs=93.4
Q ss_pred CCeEEEE-eCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeC-----CCCEEEEeeCCCeEEEE
Q 015438 181 QRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVY 254 (407)
Q Consensus 181 ~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~i~ 254 (407)
.++|+.. .....|+-.|++.|+.+........ .+|..++-.. +....++|-.+..+..|
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~---------------~~v~~~~p~~K~aqlt~e~tflGls~n~lfri 557 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDD---------------IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRI 557 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCC---------------cceeEecccccccccCCCceEEEECCCceEEe
Confidence 3344443 3457899999999987665543321 1233332211 12345667778889999
Q ss_pred EcCCCe--eeee---eeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCC
Q 015438 255 DLEANK--LSLR---ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 329 (407)
Q Consensus 255 d~~~~~--~~~~---~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 329 (407)
|.+-.. ++.. .........|++-+ .+| +||+|+.+|.||+||-- ..+....+.+...+|..|..+.||+
T Consensus 558 DpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt-~~G-~iavgs~~G~IRLyd~~----g~~AKT~lp~lG~pI~~iDvt~DGk 631 (794)
T PF08553_consen 558 DPRLSGNKLVDSQSKQYSSKNNFSCFATT-EDG-YIAVGSNKGDIRLYDRL----GKRAKTALPGLGDPIIGIDVTADGK 631 (794)
T ss_pred ccCCCCCceeeccccccccCCCceEEEec-CCc-eEEEEeCCCcEEeeccc----chhhhhcCCCCCCCeeEEEecCCCc
Confidence 998642 2211 11234556777775 555 78999999999999953 2333445667788999999999999
Q ss_pred EEEEEeCCCcEEEEEC
Q 015438 330 YLISNGKDQAIKLWDI 345 (407)
Q Consensus 330 ~l~s~~~dg~i~iwd~ 345 (407)
||++.+ +..|.+++.
T Consensus 632 wilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 632 WILATC-KTYLLLIDT 646 (794)
T ss_pred EEEEee-cceEEEEEE
Confidence 998776 567778775
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.79 E-value=0.0054 Score=55.40 Aligned_cols=179 Identities=16% Similarity=0.128 Sum_probs=106.2
Q ss_pred CeEEEEEcCCCeEEeEeeecc-ccceEEEEEEECCC----CCeEEEEeC----------CCeEEEEECCCC-c---eecc
Q 015438 146 SQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPD----QRHLVYASM----------SPIVHIVDVGSG-T---MESL 206 (407)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~sp~----~~~l~~~~~----------dg~i~vwd~~~~-~---~~~~ 206 (407)
..|++.|..+...+....... ++...+..+.+..+ ..+|++|+. .|.|.++++... . ....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468899987776554433322 22222334444432 567877753 288999999874 1 1111
Q ss_pred ccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCe-eeeeee-ccCCCeEEEEecCCCCCE
Q 015438 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRIL-AHTSDVNTVCFGDESGHL 284 (407)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-~~~~~v~~i~~s~~~~~~ 284 (407)
.... ...++|++++-- ++ .|+++. ++.|++|++...+ ....-. .....+.++... +++
T Consensus 82 i~~~--------------~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~ 141 (321)
T PF03178_consen 82 IHST--------------EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNY 141 (321)
T ss_dssp EEEE--------------EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTE
T ss_pred EEEE--------------eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccE
Confidence 1101 123478888776 44 455554 4789999998777 333221 233366666664 568
Q ss_pred EEEEeCCCcEEEEeCcccCCCCceeeeec--cccCCeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 015438 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 285 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 347 (407)
++.|.....+.++..+. ....+..+. .....++++.|-++++.++.+..+|.+.++....
T Consensus 142 I~vgD~~~sv~~~~~~~---~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 142 ILVGDAMKSVSLLRYDE---ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEESSSSEEEEEEET---TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEcccCEEEEEEEc---cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 99999888888885541 222233222 2244588888886667999999999999999874
No 350
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.77 E-value=7.8e-05 Score=42.82 Aligned_cols=38 Identities=39% Similarity=0.626 Sum_probs=33.8
Q ss_pred ceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEE
Q 015438 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (407)
Q Consensus 307 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd 344 (407)
++...+..|...|.++.|.+++.++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45666778888999999999999999999999999996
No 351
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.75 E-value=0.0017 Score=59.41 Aligned_cols=229 Identities=17% Similarity=0.179 Sum_probs=114.4
Q ss_pred CCCCCEEEEEe---------CCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCce
Q 015438 133 SADGSLFVAGF---------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (407)
Q Consensus 133 s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~ 203 (407)
|||+++++... ..+.+.|||+.++..... ... ...+....|||+|+.++... ++.|+++++.++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l-~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL-TPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES-S-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC-cCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 68888877632 246799999999743322 111 33577899999999999875 57899999887754
Q ss_pred eccccccccccceeeeecCC----CCccccEEEEEEeCCCCEEEEeeCCC------------------------------
Q 015438 204 ESLANVTEIHDGLDFSAADD----GGYSFGIFSLKFSTDGRELVAGSSDD------------------------------ 249 (407)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg------------------------------ 249 (407)
.++.... ... .+...++ ++--..-..+-||||+++|+....|.
T Consensus 76 ~~lT~dg--~~~-i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 76 TQLTTDG--EPG-IYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp EESES----TTT-EEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred EEecccc--cee-EEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence 4333211 000 0000000 00001224588999999888764332
Q ss_pred ------eEEEEEcCCCeeee-ee----eccCCCeEEEEecCCCCC-EEEEE-eCC---CcEEEEeCcccCCCCceeeeec
Q 015438 250 ------CIYVYDLEANKLSL-RI----LAHTSDVNTVCFGDESGH-LIYSG-SDD---NLCKVWDRRCLNVKGKPAGVLM 313 (407)
Q Consensus 250 ------~i~i~d~~~~~~~~-~~----~~~~~~v~~i~~s~~~~~-~l~s~-~~d---~~i~vwd~~~~~~~~~~~~~~~ 313 (407)
.+.|+|+.+++... .. ......+..+.|. ++++ +++.- ..+ ..+.++|.. .+.......
T Consensus 153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~-~d~~~l~~~~~nR~q~~~~l~~~d~~----tg~~~~~~~ 227 (353)
T PF00930_consen 153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWS-PDGKRLWVQWLNRDQNRLDLVLCDAS----TGETRVVLE 227 (353)
T ss_dssp S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEE-ETTEEEEEEEEETTSTEEEEEEEEEC----TTTCEEEEE
T ss_pred CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceec-CCCcEEEEEEcccCCCEEEEEEEECC----CCceeEEEE
Confidence 24445555554321 11 1234457788897 5555 33332 222 245666665 333222222
Q ss_pred c-ccCC---eEEEEec-CCCC-EEEEEeCCCcEEEEECCCCCCcccccCCCcccccccee-eeCCCCCCcc
Q 015438 314 G-HLEG---ITFIDSR-GDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW-MDYPPQARDL 377 (407)
Q Consensus 314 ~-~~~~---i~~~~~s-~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l 377 (407)
. .... -....|. +++. +|.....||.-+||-+......... .....|.|.. +.+++++..+
T Consensus 228 e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~---lT~G~~~V~~i~~~d~~~~~i 295 (353)
T PF00930_consen 228 ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ---LTSGDWEVTSILGWDEDNNRI 295 (353)
T ss_dssp EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE---SS-SSS-EEEEEEEECTSSEE
T ss_pred ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceec---cccCceeecccceEcCCCCEE
Confidence 1 1222 2344554 5554 4555557777555544433222221 4455666633 4555655433
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.75 E-value=0.0032 Score=57.95 Aligned_cols=202 Identities=13% Similarity=0.071 Sum_probs=105.6
Q ss_pred ccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeecc-----ccceEEEEEEECC-----CC---CeEE
Q 015438 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-----SLRWTVTDTSLSP-----DQ---RHLV 185 (407)
Q Consensus 119 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~sp-----~~---~~l~ 185 (407)
.++...++|++++.|.-| ++|.|..+|.+.|.|++....+....... .....|+++.|+. |+ -.++
T Consensus 81 l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 81 LLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp EE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred heeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 344458999999998655 88899999999999998775555432222 2344688888862 22 4688
Q ss_pred EEeCCCeEEEEECCC-CceeccccccccccceeeeecCCCCccccEEEEE-EeCC---------------------CCEE
Q 015438 186 YASMSPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK-FSTD---------------------GREL 242 (407)
Q Consensus 186 ~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~---------------------~~~l 242 (407)
+|+..|.+.+|.+.- ..-.......... ..+.+.|..+. ++.+ ..++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~----------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v 229 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGAT----------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV 229 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE------------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeecc----------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence 889999999998741 1100000000000 01112222222 2111 1134
Q ss_pred EEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEec----CCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccc---
Q 015438 243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG----DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH--- 315 (407)
Q Consensus 243 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s----~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--- 315 (407)
+++ .+..++++...+.+...+.....-.+..+++- ...+..|++-..+|.|++|.+. ..+.+..+.-.
T Consensus 230 Vvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP----~Lkei~~~~l~~~~ 304 (395)
T PF08596_consen 230 VVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP----SLKEIKSVSLPPPL 304 (395)
T ss_dssp EEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT----T--EEEEEE-SS--
T ss_pred EEE-cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC----CchHhhcccCCCcc
Confidence 444 45679999998887766554221223334442 1356678888999999999997 56666555432
Q ss_pred -cCCeEEEEecCCCCEEEEEeC
Q 015438 316 -LEGITFIDSRGDGRYLISNGK 336 (407)
Q Consensus 316 -~~~i~~~~~s~~~~~l~s~~~ 336 (407)
...+...+++++|..++-.+.
T Consensus 305 d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 305 DSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp -HHHHTT-EE-TTS-EEEE-SS
T ss_pred ccccccccEECCCCCEEEEeCc
Confidence 123456677889987776653
No 353
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.015 Score=51.63 Aligned_cols=186 Identities=18% Similarity=0.108 Sum_probs=105.6
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeee-c-cccceEEEEEEECCCCCeEEEEeC-----------CC
Q 015438 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL-A-KSLRWTVTDTSLSPDQRHLVYASM-----------SP 191 (407)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~-~~~~~~v~~~~~sp~~~~l~~~~~-----------dg 191 (407)
+.+.++..-..+..|+++. ..+.+++.+++........ . .......+.+...|+|.+.++... -|
T Consensus 66 ~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G 143 (307)
T COG3386 66 GGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG 143 (307)
T ss_pred CCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence 3344444433444555542 2367777765543222111 1 111234567788899887665433 12
Q ss_pred eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC-CCeEEEEEcCC--C----e-eee
Q 015438 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA--N----K-LSL 263 (407)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~--~----~-~~~ 263 (407)
.|+.++. .+....... ++-..-+.|+||||++.|+.+.. .+.|+-|++.. + + ...
T Consensus 144 ~lyr~~p-~g~~~~l~~----------------~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~ 206 (307)
T COG3386 144 SLYRVDP-DGGVVRLLD----------------DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFV 206 (307)
T ss_pred eEEEEcC-CCCEEEeec----------------CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEE
Confidence 3333333 222222211 11123467999999987777654 47888887752 1 1 112
Q ss_pred eeeccCCCeEEEEecCCCCCEEEEEeCCC-cEEEEeCcccCCCCceeeeeccccCCeEEEEec-CCCCEEEEEe
Q 015438 264 RILAHTSDVNTVCFGDESGHLIYSGSDDN-LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISNG 335 (407)
Q Consensus 264 ~~~~~~~~v~~i~~s~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~s~~ 335 (407)
.+....+..-.++. +.+|++.+++..+| .|.+|+. .++++..+.-....+++++|- |+.+.|+..+
T Consensus 207 ~~~~~~G~PDG~~v-DadG~lw~~a~~~g~~v~~~~p-----dG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 207 DFDEEPGLPDGMAV-DADGNLWVAAVWGGGRVVRFNP-----DGKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EccCCCCCCCceEE-eCCCCEEEecccCCceEEEECC-----CCcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 22234566667777 48888886555554 8999998 578888877666788899984 4555555444
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.031 Score=51.66 Aligned_cols=225 Identities=16% Similarity=0.167 Sum_probs=136.6
Q ss_pred ceEEEEECCCCCEEEEEe-CCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEE-EeCCCeEEEEECCCCce
Q 015438 126 RAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTM 203 (407)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~dg~i~vwd~~~~~~ 203 (407)
....+...+++..+.... ....+...+.. ........ ..+. .....++.++.+..+.. ...+..|.+.|..+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~-~~g~-~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSL-SVGG-VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeec-cCCC-ccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 456778888886554443 22345555544 21111111 1110 23456788888875554 44568999999776655
Q ss_pred eccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC---CCeEEEEEcCCCeeeeeeeccCCCeEEEEecCC
Q 015438 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (407)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~ 280 (407)
........ ....++++|+++.++++.. ++.+.+.|..+.+.+........+ ..+++. +
T Consensus 109 ~~~~~vG~-----------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~-p 169 (381)
T COG3391 109 LGSIPVGL-----------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD-P 169 (381)
T ss_pred eeEeeecc-----------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC-C
Confidence 44332221 3456899999987777655 689999999999988886555455 889997 6
Q ss_pred CCCEE-EEEeCCCcEEEEeCcccCCCCceee-e---eccccCCeEEEEecCCCCEEEEEeCC---CcEEEEECCCCCCcc
Q 015438 281 SGHLI-YSGSDDNLCKVWDRRCLNVKGKPAG-V---LMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNA 352 (407)
Q Consensus 281 ~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~-~---~~~~~~~i~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~ 352 (407)
+++.+ ++-..++.|.+.|.. ...... . ...-......+.++|+|.++...... +.+...|..+.....
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~----~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTS----GNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCC----CcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 77744 444578999999975 222221 0 11222345678899999976655443 589999988865544
Q ss_pred cccCCCccccccceeeeCCCCCCccCC
Q 015438 353 SCNLGFRSYEWDYRWMDYPPQARDLKH 379 (407)
Q Consensus 353 ~~~~~~~~~~~~v~~~~~~~~~~~l~~ 379 (407)
.-.. .... ....+.++|++..+-+
T Consensus 246 ~~~~--~~~~-~~~~v~~~p~g~~~yv 269 (381)
T COG3391 246 TDLP--VGSG-APRGVAVDPAGKAAYV 269 (381)
T ss_pred eccc--cccC-CCCceeECCCCCEEEE
Confidence 3110 1111 2334566676655544
No 355
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.00043 Score=65.28 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=87.8
Q ss_pred cEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeee-eeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCc
Q 015438 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 307 (407)
Q Consensus 229 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 307 (407)
.|.--+++..+++++.|+.-|.+++|+-..++.... ..+..+.+..++.| +...++|.|+..|.|.++-+.... ...
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs-~~e~lvAagt~~g~V~v~ql~~~~-p~~ 112 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVS-SVEYLVAAGTASGRVSVFQLNKEL-PRD 112 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEec-chhHhhhhhcCCceEEeehhhccC-CCc
Confidence 455566777889999999999999999876654322 22244555666776 778889999999999999886421 222
Q ss_pred eeeeec---cccCCeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 015438 308 PAGVLM---GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 308 ~~~~~~---~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 347 (407)
....-. .|...|++++|++++..+++|...|.|..-.+..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 222211 2667899999999999999999999999998887
No 356
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00031 Score=65.42 Aligned_cols=80 Identities=19% Similarity=0.141 Sum_probs=68.6
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeE-EEEecCCCCEEEEEeCCCcEEEEECCC
Q 015438 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT-FIDSRGDGRYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 269 ~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~s~~~dg~i~iwd~~~ 347 (407)
...+.-+.|+ |.-.++|.+..+|.|-++.+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.+
T Consensus 20 ~~~i~~~ewn-P~~dLiA~~t~~gelli~R~n-----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 20 PINIKRIEWN-PKMDLIATRTEKGELLIHRLN-----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ccceEEEEEc-CccchhheeccCCcEEEEEec-----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 4567889998 777899999999999999884 566777776777777 999999999999999999999999999
Q ss_pred CCCcccc
Q 015438 348 MSSNASC 354 (407)
Q Consensus 348 ~~~~~~~ 354 (407)
+..+...
T Consensus 94 ~~~l~~~ 100 (665)
T KOG4640|consen 94 GGRLVSF 100 (665)
T ss_pred CCceecc
Confidence 8877663
No 357
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.007 Score=51.33 Aligned_cols=195 Identities=17% Similarity=0.195 Sum_probs=112.0
Q ss_pred EECCCCCEEEEEeCC-----CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeC----------------
Q 015438 131 QFSADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------------- 189 (407)
Q Consensus 131 ~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------------- 189 (407)
.|||||.+|.+.-.| |.|-|||...+ ....-....|.-....+.|.+||+.++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence 599999999876443 78999998854 2332233444445677899999999988642
Q ss_pred --CCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCe-----EEEEEcCCCeee
Q 015438 190 --SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-----IYVYDLEANKLS 262 (407)
Q Consensus 190 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~ 262 (407)
...+.+.|..++..+....+.. .-+...|..+...+||..++-+-..|. -.+=....++.+
T Consensus 198 sMePSlvlld~atG~liekh~Lp~------------~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l 265 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPA------------SLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL 265 (366)
T ss_pred hcCccEEEEeccccchhhhccCch------------hhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC
Confidence 1133344444443332222211 123446777888888875554432221 111111223333
Q ss_pred eeee-------ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEe
Q 015438 263 LRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (407)
Q Consensus 263 ~~~~-------~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 335 (407)
..+. .....|-+|+.+..++-..+|+-..+...+||.. ++..+..-. -.....++- ...-++..+
T Consensus 266 ~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~----tG~vv~~a~--l~daaGva~--~~~gf~vss 337 (366)
T COG3490 266 EFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA----TGAVVSEAA--LPDAAGVAA--AKGGFAVSS 337 (366)
T ss_pred cccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC----CCcEEeccc--cccccccee--ccCceEEec
Confidence 3222 2244677889885666566666677789999998 776654321 111222333 344477777
Q ss_pred CCCcEEEEECCC
Q 015438 336 KDQAIKLWDIRK 347 (407)
Q Consensus 336 ~dg~i~iwd~~~ 347 (407)
.+|.+.++.-..
T Consensus 338 g~G~~~~~s~~~ 349 (366)
T COG3490 338 GQGRIIFYSRAA 349 (366)
T ss_pred CCceEEeccccc
Confidence 789999885443
No 358
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0033 Score=57.65 Aligned_cols=143 Identities=16% Similarity=0.240 Sum_probs=93.2
Q ss_pred CCCeEE-EEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCC-------EEEEeeCCCeE
Q 015438 180 DQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-------ELVAGSSDDCI 251 (407)
Q Consensus 180 ~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i 251 (407)
+.++|+ .+.....|+-.|++.|+.+....+.. .|+-+.+.|+.+ .-++|-.|..|
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~-----------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~v 406 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFED-----------------DINMVDITPDFKFAQLTSEQTLVGLSDNSV 406 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccC-----------------CcceeeccCCcchhcccccccEEeecCCce
Confidence 444444 44555678889999988765544322 245555666432 23456678889
Q ss_pred EEEEcCCCee--eeeeecc----CCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEec
Q 015438 252 YVYDLEANKL--SLRILAH----TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (407)
Q Consensus 252 ~i~d~~~~~~--~~~~~~~----~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 325 (407)
.-||.+-... +..-..| .....|.+-. . ..++++||.+|.||+||.- .......+.+...+|..+..+
T Consensus 407 friDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~-sG~IvvgS~~GdIRLYdri----~~~AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 407 FRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-E-SGYIVVGSLKGDIRLYDRI----GRRAKTALPGLGDAIKHVDVT 480 (644)
T ss_pred EEecccccCcceeeeeeccccccccccceeeec-C-CceEEEeecCCcEEeehhh----hhhhhhcccccCCceeeEEee
Confidence 9999974322 2222222 2334555553 3 4478999999999999973 334445577888899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECC
Q 015438 326 GDGRYLISNGKDQAIKLWDIR 346 (407)
Q Consensus 326 ~~~~~l~s~~~dg~i~iwd~~ 346 (407)
.+|.+|+..+ +..+.+-++.
T Consensus 481 adGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 481 ADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccCcEEEEec-ccEEEEEEEe
Confidence 9999988665 5677777754
No 359
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.58 E-value=0.0086 Score=50.07 Aligned_cols=123 Identities=20% Similarity=0.071 Sum_probs=81.4
Q ss_pred CCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCe
Q 015438 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (407)
Q Consensus 181 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 260 (407)
..+++.|+..+.+.-.|..++...-...... .|.+-+.- -|++++.|...|.+++.+.++++
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~-----------------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs 84 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV-----------------RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS 84 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc-----------------eeeeeeEE-ECCEEEEEEccCcEEEEEecchh
Confidence 3466677888888888888876543222111 22222211 46789999999999999999998
Q ss_pred eeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecC
Q 015438 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (407)
Q Consensus 261 ~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 326 (407)
....+.... .|.+-+..+.++.++.+|+.|+..+..|.+ ...++...+.-.+.-.+-+..|
T Consensus 85 ~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~----~~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 85 QIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPK----TYGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred heeeeeehh-hhccceEEcCCCceEEEecCCCcEEEeccc----ccceEEecccCCceeccceecC
Confidence 776665432 333333335788999999999999999998 6677766553333223334455
No 360
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.55 E-value=0.021 Score=50.54 Aligned_cols=209 Identities=17% Similarity=0.172 Sum_probs=116.4
Q ss_pred eeccccccceeeeeccCCCCcccccCCCceEE-------EEECCCC-CEEEEEeCCCeEEEEEcCC-CeEEeEe-eeccc
Q 015438 98 RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYV-------SQFSADG-SLFVAGFQASQIRIYDVER-GWKIQKD-ILAKS 167 (407)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-------~~~s~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~~~ 167 (407)
.+++.++-..+.++.|.....+++-....+-. .-.-|.+ +.|.+-|.||.+.-..++. |+..... ..+..
T Consensus 101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~ 180 (342)
T PF06433_consen 101 ALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDP 180 (342)
T ss_dssp EE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESST
T ss_pred EEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCC
Confidence 34455555666677776655555544444321 1222322 4577888999999999874 4333221 11111
Q ss_pred cceEE-EEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEee
Q 015438 168 LRWTV-TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (407)
Q Consensus 168 ~~~~v-~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 246 (407)
...++ ..-.+...+..++.-+.+|.|+-.|+............-....- ...+--.+.-.-+++++..+.|++--
T Consensus 181 ~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e----~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 181 DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAE----KADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHH----HHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred CCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccc----cccCcCCcceeeeeeccccCeEEEEe
Confidence 11222 22334445556666789999999998876543222111100000 00000112344578887666555532
Q ss_pred CC----------CeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEe-CCCcEEEEeCcccCCCCceeeeeccc
Q 015438 247 SD----------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGH 315 (407)
Q Consensus 247 ~d----------g~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~ 315 (407)
.. ..|.++|+.+++.+.++.. ..++.+|.++..+..+|++.+ .++.|.+||.. +++.+..+..-
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~----tGk~~~~~~~l 331 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA----TGKLVRSIEQL 331 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETT----T--EEEEE---
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCc----CCcEEeehhcc
Confidence 22 1599999999999999864 346889999865555776554 57899999998 88888887644
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00056 Score=63.75 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=75.8
Q ss_pred cEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeE-EEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCc
Q 015438 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 307 (407)
Q Consensus 229 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 307 (407)
.|.-+.|+|.-.+||.+..+|.|.+..+. .+.+-++..+...++ +++|. ++|++|+.|-.||+|++.|.. ++.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~-~DGkllaVg~kdG~I~L~Dve----~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWR-PDGKLLAVGFKDGTIRLHDVE----KGG 95 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeec-CCCCEEEEEecCCeEEEEEcc----CCC
Confidence 57789999999999999999999999998 777788876777777 99996 889999999999999999998 555
Q ss_pred eeeee-ccccCCeEEEEecC
Q 015438 308 PAGVL-MGHLEGITFIDSRG 326 (407)
Q Consensus 308 ~~~~~-~~~~~~i~~~~~s~ 326 (407)
.+... ......|+++-|++
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 55542 23445677777753
No 362
>PHA02713 hypothetical protein; Provisional
Probab=97.53 E-value=0.005 Score=59.85 Aligned_cols=187 Identities=10% Similarity=0.041 Sum_probs=98.6
Q ss_pred CCCEEEEEeCC------CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC-----eEEEEECCCCce
Q 015438 135 DGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGSGTM 203 (407)
Q Consensus 135 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-----~i~vwd~~~~~~ 203 (407)
++..++.|+.+ ..+..||+.+.... ..............+. -+++..+.||.++ .+..||..+.+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 56677777753 34778898776322 1111111111122222 3677778887654 478899887765
Q ss_pred eccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC-----------------------CeEEEEEcCCCe
Q 015438 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----------------------DCIYVYDLEANK 260 (407)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------------------g~i~i~d~~~~~ 260 (407)
.....+.... .....+. -+|++.+.|+.+ ..+..||..+.+
T Consensus 380 ~~~~~mp~~r--------------~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~ 443 (557)
T PHA02713 380 KMLPDMPIAL--------------SSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI 443 (557)
T ss_pred EECCCCCccc--------------ccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe
Confidence 4433222110 0111122 257777777654 247889987764
Q ss_pred ee--eeeeccCCCeEEEEecCCCCCEEEEEeCCC------cEEEEeCcc-cCCCCceeeeeccccCCeEEEEecCCCCEE
Q 015438 261 LS--LRILAHTSDVNTVCFGDESGHLIYSGSDDN------LCKVWDRRC-LNVKGKPAGVLMGHLEGITFIDSRGDGRYL 331 (407)
Q Consensus 261 ~~--~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~------~i~vwd~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 331 (407)
-. ..+...... .+++. -++.+.+.|+.++ .+..||... . ....+..+.........+.+ +++..
T Consensus 444 W~~v~~m~~~r~~-~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~--~W~~~~~m~~~r~~~~~~~~--~~~iy 516 (557)
T PHA02713 444 WETLPNFWTGTIR-PGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYN--GWELITTTESRLSALHTILH--DNTIM 516 (557)
T ss_pred EeecCCCCccccc-CcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCC--CeeEccccCcccccceeEEE--CCEEE
Confidence 32 222111111 12333 3567777787542 467788862 1 12233334333333334444 78888
Q ss_pred EEEeCCC--cEEEEECCC
Q 015438 332 ISNGKDQ--AIKLWDIRK 347 (407)
Q Consensus 332 ~s~~~dg--~i~iwd~~~ 347 (407)
++||.|+ ++..||..+
T Consensus 517 v~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 517 MLHCYESYMLQDTFNVYT 534 (557)
T ss_pred EEeeecceeehhhcCccc
Confidence 9999888 566666655
No 363
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.53 E-value=0.018 Score=41.93 Aligned_cols=100 Identities=23% Similarity=0.283 Sum_probs=66.7
Q ss_pred EEEEEEeC---CC-CEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCC
Q 015438 230 IFSLKFST---DG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 305 (407)
Q Consensus 230 v~~~~~s~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~ 305 (407)
|++|++.. +| +.|++|+.|..|++|+-. +.+..+. ....|++++-. .+..|+.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~~----- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSL--GGGRFAYALANGTVGVYDRS----- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEc--CCCEEEEEecCCEEEEEeCc-----
Confidence 45555554 43 489999999999999754 5666664 45678888775 34679999999999999863
Q ss_pred CceeeeeccccCCeEEEEe-cC--CC-CEEEEEeCCCcEE
Q 015438 306 GKPAGVLMGHLEGITFIDS-RG--DG-RYLISNGKDQAIK 341 (407)
Q Consensus 306 ~~~~~~~~~~~~~i~~~~~-s~--~~-~~l~s~~~dg~i~ 341 (407)
..+-..+.. ..++++.+ .. || .-|++|-.+|.|-
T Consensus 72 -~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 -QRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -ceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 222233222 23555554 33 33 3688888888774
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.48 E-value=0.078 Score=49.49 Aligned_cols=199 Identities=14% Similarity=0.045 Sum_probs=100.1
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEE-----EEEECCCCCeEEEEeCCCeEEEEECC
Q 015438 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT-----DTSLSPDQRHLVYASMSPIVHIVDVG 199 (407)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~-----~~~~sp~~~~l~~~~~dg~i~vwd~~ 199 (407)
+.|-++.|+.+.. |++...||.+++||+... . .-..........|. ...+..+| ++.-..++.+.+..-.
T Consensus 81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~-~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGE-F-QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCc-e-eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCc
Confidence 7899999998655 555668999999998643 2 11000001111122 22333345 3333445555444322
Q ss_pred CCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecC
Q 015438 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (407)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~ 279 (407)
.... ........+.. ..... ..........++.+....+....++.+.+.+-...+. + ...+++..+++|
T Consensus 156 ~~~~-~~~~~~~~p~~-~~~~~---~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavS- 225 (410)
T PF04841_consen 156 DEPV-KLRRLPEIPGL-WTKFH---WWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVS- 225 (410)
T ss_pred cccc-hhhccccCCCc-ccccc---cccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEEC-
Confidence 2111 11111111100 00000 0000000134555555555555666677555433222 2 235689999998
Q ss_pred CCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccc-cCCeEEEEecCCCCEEEEEeCCCcEEEEE
Q 015438 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (407)
Q Consensus 280 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~~~dg~i~iwd 344 (407)
++++++|.-..+|.+.+.... -.+.+..+... ......+.|..+...++.- ...|.+..
T Consensus 226 png~~iAl~t~~g~l~v~ssD----f~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 226 PNGKFIALFTDSGNLWVVSSD----FSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCCCEEEEEECCCCEEEEECc----ccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 889999999999999998865 33444444322 3456777886554333222 33455544
No 365
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.44 E-value=0.00056 Score=38.99 Aligned_cols=39 Identities=36% Similarity=0.610 Sum_probs=32.8
Q ss_pred CeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEe
Q 015438 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298 (407)
Q Consensus 259 ~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd 298 (407)
+++...+..|...|.+++|+ +.+.++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFS-PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEEC-CCCCEEEEecCCCeEEEcC
Confidence 34556677888999999998 6668999999999999996
No 366
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.44 E-value=0.028 Score=49.49 Aligned_cols=149 Identities=15% Similarity=0.092 Sum_probs=91.7
Q ss_pred CCCCeEEEEeCCCeEEEEECC-CCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcC
Q 015438 179 PDQRHLVYASMSPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (407)
Q Consensus 179 p~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 257 (407)
..++.|+.|+.+| +.++++. ........ +...|..+...|+-+.+++-+ |+.++++++.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~------------------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~ 64 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL------------------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLD 64 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe------------------ecceEEEEEEecccCEEEEEc-CCccEEEEch
Confidence 3578899999998 8999982 22221111 112488999999877766664 5999999987
Q ss_pred CCeeeeee--------------eccCCCeEEEE-ecCCCCCEEEEEeCCCcEEEEeCcccCCCC-ceeeeeccccCCeEE
Q 015438 258 ANKLSLRI--------------LAHTSDVNTVC-FGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITF 321 (407)
Q Consensus 258 ~~~~~~~~--------------~~~~~~v~~i~-~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~i~~ 321 (407)
.-...... ......+...+ -....+...++......|.+|......... +....+. ....+..
T Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~ 143 (275)
T PF00780_consen 65 SLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSS 143 (275)
T ss_pred hhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEE
Confidence 65433310 12233444444 112344444455556699998886321122 3444544 3467889
Q ss_pred EEecCCCCEEEEEeCCCcEEEEECCCCCCc
Q 015438 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (407)
Q Consensus 322 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (407)
++|. ++.|+.|.. ....+.|+.++...
T Consensus 144 i~~~--~~~i~v~~~-~~f~~idl~~~~~~ 170 (275)
T PF00780_consen 144 IAFL--GNKICVGTS-KGFYLIDLNTGSPS 170 (275)
T ss_pred EEEe--CCEEEEEeC-CceEEEecCCCCce
Confidence 9997 566777774 44888899866543
No 367
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.43 E-value=0.058 Score=48.72 Aligned_cols=195 Identities=15% Similarity=0.147 Sum_probs=108.8
Q ss_pred eEEEEECCC----CCEEEEEeC----------CCeEEEEEcCCC----eEEeEeeeccccceEEEEEEECCCCCeEEEEe
Q 015438 127 AYVSQFSAD----GSLFVAGFQ----------ASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188 (407)
Q Consensus 127 v~~~~~s~~----~~~l~~~~~----------dg~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 188 (407)
+..+.+..+ ..+|++|.. .|.|.++++... .++.. .......++|++++-- ++. |+++.
T Consensus 29 ~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~-i~~~~~~g~V~ai~~~-~~~-lv~~~ 105 (321)
T PF03178_consen 29 LCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL-IHSTEVKGPVTAICSF-NGR-LVVAV 105 (321)
T ss_dssp EEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE-EEEEEESS-EEEEEEE-TTE-EEEEE
T ss_pred EEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE-EEEEeecCcceEhhhh-CCE-EEEee
Confidence 334445543 467777653 288999999883 22322 2223345678888754 444 44443
Q ss_pred CCCeEEEEECCCCc-eeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCC-Ceeeeeee
Q 015438 189 MSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRIL 266 (407)
Q Consensus 189 ~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~ 266 (407)
.+.|.+|++...+ ........ ....+.++... +++|++|.....|.++..+. ...+..+.
T Consensus 106 -g~~l~v~~l~~~~~l~~~~~~~---------------~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va 167 (321)
T PF03178_consen 106 -GNKLYVYDLDNSKTLLKKAFYD---------------SPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVA 167 (321)
T ss_dssp -TTEEEEEEEETTSSEEEEEEE----------------BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEE
T ss_pred -cCEEEEEEccCcccchhhheec---------------ceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEE
Confidence 4789999998777 33222111 11145666655 55899998877788775443 23233332
Q ss_pred --ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCccc---CCCCc-eee-eeccc-cCCeEEE---EecCC--CC----
Q 015438 267 --AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL---NVKGK-PAG-VLMGH-LEGITFI---DSRGD--GR---- 329 (407)
Q Consensus 267 --~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~-~~~-~~~~~-~~~i~~~---~~s~~--~~---- 329 (407)
.....++++.+- .+++.++.+..+|.+.++..... ...+. .+. ...-| ...|+++ ++.|. +.
T Consensus 168 ~d~~~~~v~~~~~l-~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~ 246 (321)
T PF03178_consen 168 RDYQPRWVTAAEFL-VDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPN 246 (321)
T ss_dssp EESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTE
T ss_pred ecCCCccEEEEEEe-cCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccc
Confidence 234457888886 34468999999999999987521 11122 121 22222 4467777 55552 22
Q ss_pred --EEEEEeCCCcEEEE
Q 015438 330 --YLISNGKDQAIKLW 343 (407)
Q Consensus 330 --~l~s~~~dg~i~iw 343 (407)
.++.++.+|.|.+.
T Consensus 247 ~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 247 RPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEEEETTS-EEEE
T ss_pred cceEEEEecCCEEEEE
Confidence 47888889998844
No 368
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.37 E-value=0.00083 Score=54.91 Aligned_cols=110 Identities=18% Similarity=0.320 Sum_probs=76.1
Q ss_pred CCEEEEeeCCCeEEEEEcCCCeeee-eeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeecccc-
Q 015438 239 GRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL- 316 (407)
Q Consensus 239 ~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~- 316 (407)
+..+++|+.+|.|++|.....-... ........+.++.-.-.++.+..+++.||.|+.|++. ..+.+.....|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~----p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK----PNKVLGYVGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccc----cCceeeeeccccC
Confidence 4579999999999999876221111 1111223333333222455688999999999999997 667666666676
Q ss_pred CCeEEEEecCCCCEEEEE--eCCCcEEEEECCCCCCcc
Q 015438 317 EGITFIDSRGDGRYLISN--GKDQAIKLWDIRKMSSNA 352 (407)
Q Consensus 317 ~~i~~~~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~~ 352 (407)
.++..+..+..+++++.+ |.|..++.|++...+...
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~ 183 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDES 183 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcchhhhhccC
Confidence 566666677777888888 888999999988766544
No 369
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.36 E-value=0.094 Score=46.34 Aligned_cols=156 Identities=12% Similarity=0.049 Sum_probs=78.3
Q ss_pred ccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCc-ccCCCC
Q 015438 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR-CLNVKG 306 (407)
Q Consensus 228 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~-~~~~~~ 306 (407)
+.+..+.-+++|++++++.......-||.-...-...-+.-...|..+.|. +++.+.+.+ ..|.|++=+.. ....-.
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~-~~~~lw~~~-~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFS-PDGNLWMLA-RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE--TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceec-CCCCEEEEe-CCcEEEEccCCCCccccc
Confidence 468888899999999888766666677764322222222356789999998 677766544 88888887721 000001
Q ss_pred ceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCCcceE
Q 015438 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 386 (407)
Q Consensus 307 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v~ 386 (407)
+++..+..-.-.+..++|.+++...++|+ .|.+ +.....++.=... .........+..+.|.+..+-++.+.++.+-
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~-~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll 299 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKD-RVGENVPSNLYRIVFVNPDKGFVLGQDGVLL 299 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE--GGGTTSSS---EEEEEETTEEEEE-STTEEE
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceEC-ccccCCCCceEEEEEcCCCceEEECCCcEEE
Confidence 11111112233588999999888777666 4433 3344443332111 0011223345566776667777777777776
Q ss_pred EE
Q 015438 387 TY 388 (407)
Q Consensus 387 ~~ 388 (407)
.|
T Consensus 300 ~~ 301 (302)
T PF14870_consen 300 RY 301 (302)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 370
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.28 E-value=0.03 Score=50.46 Aligned_cols=197 Identities=18% Similarity=0.166 Sum_probs=99.8
Q ss_pred EECCCCCEEEEEeC---CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccc
Q 015438 131 QFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (407)
Q Consensus 131 ~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 207 (407)
+|.++|+.|+.++. ...+.+.|+.+++..+. ....+ .......++|+++.++.......|.-.|+.+.+...+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QL-Tdg~g--~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQL-TDGPG--DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS---B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEEC-ccCCC--CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 57889987776655 44677888888744332 21111 11224566788888877666678999999998765554
Q ss_pred cccccccceeeeecCCCCccccEEEEEEe--CCCCEEEEee---C-------------------CCeEEEEEcCCCeeee
Q 015438 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGS---S-------------------DDCIYVYDLEANKLSL 263 (407)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~---~-------------------dg~i~i~d~~~~~~~~ 263 (407)
..... .+-...|. .++..++-.- . ...|.-.|+.+++...
T Consensus 119 ~~p~~----------------~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~ 182 (386)
T PF14583_consen 119 EVPDD----------------WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV 182 (386)
T ss_dssp E--TT----------------EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred ECCcc----------------cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence 44332 22223342 3444433221 1 1246777888887655
Q ss_pred eeeccCCCeEEEEecCCCCCEEEEEeC---CCc-EEEEeCcccCCCCceeeeeccccC--CeEEEEecCCCCEEEEEe--
Q 015438 264 RILAHTSDVNTVCFGDESGHLIYSGSD---DNL-CKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDGRYLISNG-- 335 (407)
Q Consensus 264 ~~~~~~~~v~~i~~s~~~~~~l~s~~~---d~~-i~vwd~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~s~~-- 335 (407)
.+ .....+..+.|+|.++.+|+-|-. +.. -|||-++. .+.....+..+.. .+..=-|.|||..|.--+
T Consensus 183 v~-~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~ 258 (386)
T PF14583_consen 183 VF-EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT 258 (386)
T ss_dssp EE-EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-EEEEEEE
T ss_pred EE-ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCEEEEEeec
Confidence 44 355678899999999988888754 332 47787763 3333333433322 234445899998765422
Q ss_pred ---CCCcEEEEECCCCCC
Q 015438 336 ---KDQAIKLWDIRKMSS 350 (407)
Q Consensus 336 ---~dg~i~iwd~~~~~~ 350 (407)
.+..|.-+|+.+++.
T Consensus 259 ~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 259 PGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp TTT--EEEEEE-TTT--E
T ss_pred CCCCceEEEeeCCCCCCc
Confidence 244677788887654
No 371
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.27 E-value=0.032 Score=46.05 Aligned_cols=154 Identities=15% Similarity=0.237 Sum_probs=93.5
Q ss_pred CCceEEEEECCCCCEEEEEeC---------CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEE-EeCCCeE
Q 015438 124 TSRAYVSQFSADGSLFVAGFQ---------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIV 193 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~dg~i 193 (407)
..+.+.-..+|+|++++-.-. .|.++.|-....- ......-. --+.++|+.+.+.+.. -+.+-.|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v--~~i~~~v~---IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQV--ELIWNCVG---ISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCc--eeeehhcc---CCccccccccCcEEEEEccCceEE
Confidence 445566678999998543222 2456666554321 11111111 1346889888776665 4566678
Q ss_pred EEEE--CCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCC
Q 015438 194 HIVD--VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (407)
Q Consensus 194 ~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 271 (407)
.-|| ..++.......+........+... ..-.++...+|++.++.-..++|...|..+++.+..+......
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-------~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~q 255 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESL-------EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQ 255 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCC-------CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCc
Confidence 6777 566655433322222111111100 1122455668888888888899999999999999999888999
Q ss_pred eEEEEecCCCCCEEEEEe
Q 015438 272 VNTVCFGDESGHLIYSGS 289 (407)
Q Consensus 272 v~~i~~s~~~~~~l~s~~ 289 (407)
+++++|--++-.+|++..
T Consensus 256 itsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 256 ITSCCFGGKNLDILYVTT 273 (310)
T ss_pred eEEEEecCCCccEEEEEe
Confidence 999999644445665544
No 372
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.18 E-value=0.093 Score=50.39 Aligned_cols=200 Identities=15% Similarity=0.131 Sum_probs=112.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEeEeeeccc---cceEEE--EEEECCCCCeEEEEeCCCeEEEEECCCCceecccccc
Q 015438 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKS---LRWTVT--DTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT 210 (407)
Q Consensus 136 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~v~--~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 210 (407)
+..+++++.++.|.-+|..+|+.+........ ....+. .+... ++..++.++.++.|+-+|.++++..-.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34566677789999999999866655332211 000010 01111 2267888888999999999999875444322
Q ss_pred ccccceeeeecCCCCccccE-EEEEEeCCCCEEEEee---------CCCeEEEEEcCCCeeeeeeeccCCC---------
Q 015438 211 EIHDGLDFSAADDGGYSFGI-FSLKFSTDGRELVAGS---------SDDCIYVYDLEANKLSLRILAHTSD--------- 271 (407)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~--------- 271 (407)
.... ....+ ....+. +..+++++ .++.++-+|..+++.+-........
T Consensus 140 ~~~~-----------~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~ 206 (488)
T cd00216 140 DQVP-----------PGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGP 206 (488)
T ss_pred CCcC-----------cceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCC
Confidence 1100 00001 011121 23455554 3678999999999876655432110
Q ss_pred -----------e-EEEEecCCCCCEEEEEeCCC------------------cEEEEeCcccCCCCceeeeecc--ccC--
Q 015438 272 -----------V-NTVCFGDESGHLIYSGSDDN------------------LCKVWDRRCLNVKGKPAGVLMG--HLE-- 317 (407)
Q Consensus 272 -----------v-~~i~~s~~~~~~l~s~~~d~------------------~i~vwd~~~~~~~~~~~~~~~~--~~~-- 317 (407)
+ ...++. +.+.+++.++.++ .|.-+|.. +++.+-.+.. |..
T Consensus 207 ~~~~~~~~g~~vw~~pa~d-~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~----tG~~~W~~~~~~~~~~~ 281 (488)
T cd00216 207 DRQMWGPGGGTSWASPTYD-PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD----TGKVKWFYQTTPHDLWD 281 (488)
T ss_pred CcceecCCCCCccCCeeEe-CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC----CCCEEEEeeCCCCCCcc
Confidence 1 122332 3455677776554 68888887 7777665431 110
Q ss_pred --CeEEEEec----CCCC---EEEEEeCCCcEEEEECCCCCCcccc
Q 015438 318 --GITFIDSR----GDGR---YLISNGKDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 318 --~i~~~~~s----~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (407)
......+. -+|. .++.++.+|.+...|.++++.+...
T Consensus 282 ~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 282 YDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred cccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 00001111 1343 5778889999999999998876653
No 373
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.006 Score=56.05 Aligned_cols=144 Identities=17% Similarity=0.254 Sum_probs=97.2
Q ss_pred eCCCCE-EEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCC------CCEEEEEeCCCcEEEEeCcccCCCCc-
Q 015438 236 STDGRE-LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES------GHLIYSGSDDNLCKVWDRRCLNVKGK- 307 (407)
Q Consensus 236 s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~------~~~l~s~~~d~~i~vwd~~~~~~~~~- 307 (407)
..+.++ +..+.....++-.|++.|+.+..+.-+.. |+-+.+.|.. ...-+.|=.|+.|.-||.|. .++
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv---~~~~ 417 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV---QGKN 417 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccc---cCcc
Confidence 334444 44455566799999999999999877765 6666775321 11123455688999999983 333
Q ss_pred eeeeecccc----CCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCCCc
Q 015438 308 PAGVLMGHL----EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (407)
Q Consensus 308 ~~~~~~~~~----~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 383 (407)
.+....+|. ..-.|.+-..+| +|++||.+|.|++||- .+....+. +++.+.+|..+..+.+|..+.+.++.
T Consensus 418 kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTA---lPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 418 KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTA---LPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhc---ccccCCceeeEEeeccCcEEEEeccc
Confidence 333333332 223444444454 7999999999999996 44443333 56677889999999999999988887
Q ss_pred ceEEE
Q 015438 384 SVATY 388 (407)
Q Consensus 384 ~v~~~ 388 (407)
.+...
T Consensus 493 yLlLi 497 (644)
T KOG2395|consen 493 YLLLI 497 (644)
T ss_pred EEEEE
Confidence 76554
No 374
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.14 E-value=0.002 Score=39.04 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=29.3
Q ss_pred ccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCee
Q 015438 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (407)
Q Consensus 228 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 261 (407)
..|.+++|+|...+||.|+.+|.|.++.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 36999999999999999999999999998 4543
No 375
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.13 E-value=0.15 Score=49.01 Aligned_cols=195 Identities=16% Similarity=0.188 Sum_probs=108.8
Q ss_pred CCCeEEEEEcCCCeEEeEeeeccccc-----------------eEE-EEEEECCCCCeEEEEeCCC--------------
Q 015438 144 QASQIRIYDVERGWKIQKDILAKSLR-----------------WTV-TDTSLSPDQRHLVYASMSP-------------- 191 (407)
Q Consensus 144 ~dg~i~iwd~~~~~~~~~~~~~~~~~-----------------~~v-~~~~~sp~~~~l~~~~~dg-------------- 191 (407)
.++.+..+|..+|+.+.......... ..| ....+.+.+..+++++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 36789999999987766543321100 001 1234444566777776554
Q ss_pred ----eEEEEECCCCceeccccccccccceeeeecCCCCcccc-EEEEEEeCCCC---EEEEeeCCCeEEEEEcCCCeeee
Q 015438 192 ----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG-IFSLKFSTDGR---ELVAGSSDDCIYVYDLEANKLSL 263 (407)
Q Consensus 192 ----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~ 263 (407)
.|.-+|..+++..-....... ..... .+...+ +..+. .-++. .+++++.+|.++.+|.++++.+-
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~-~~~~~-----~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPH-DLWDY-----DGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCC-CCccc-----ccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 788899998887544332110 00000 000001 11111 11333 67888899999999999999876
Q ss_pred eeeccCCCeEEEEecCCCCCEEEEE------------------eCCCcEEEEeCcccCCCCceeeeecccc--------C
Q 015438 264 RILAHTSDVNTVCFGDESGHLIYSG------------------SDDNLCKVWDRRCLNVKGKPAGVLMGHL--------E 317 (407)
Q Consensus 264 ~~~~~~~~v~~i~~s~~~~~~l~s~------------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~--------~ 317 (407)
..... ...+..+ + ..++.+ ..+|.+.-.|+. +++.+-...... .
T Consensus 326 ~~~~~---~~~~~~~-~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~----tG~~~W~~~~~~~~~~~~~g~ 395 (488)
T cd00216 326 ARPEV---EQPMAYD-P--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK----TGKVVWEKREGTIRDSWNIGF 395 (488)
T ss_pred EeEee---ccccccC-C--ceEEEccccccccCcccccCCCCCCCceEEEEEeCC----CCcEeeEeeCCccccccccCC
Confidence 54321 1112332 2 223222 235677777876 666554443210 1
Q ss_pred Ce--EEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCC
Q 015438 318 GI--TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (407)
Q Consensus 318 ~i--~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (407)
+. ..+.. .+..|+.++.||.|+.+|.++++.+.+....
T Consensus 396 ~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 396 PHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred cccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEECC
Confidence 11 11222 5677888899999999999999988776543
No 376
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.06 E-value=0.047 Score=53.17 Aligned_cols=192 Identities=16% Similarity=0.158 Sum_probs=103.6
Q ss_pred EEEECCCCCEEEEEeCC------CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC-----eEEEEE
Q 015438 129 VSQFSADGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVD 197 (407)
Q Consensus 129 ~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-----~i~vwd 197 (407)
+++.. ++..+++|+.| ..+..||..++.... ............... -+|...|+|+.|| ++..||
T Consensus 327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEE--ECCEEEEEeccccccccccEEEec
Confidence 33443 45788888888 357888888764222 111111111122222 2688888899887 477788
Q ss_pred CCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCC------eEEEEEcCCCeee--eeeeccC
Q 015438 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD------CIYVYDLEANKLS--LRILAHT 269 (407)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------~i~i~d~~~~~~~--~~~~~~~ 269 (407)
..+.+.......... ........+ +|.+.++|+.++ ++..||..+++-. ..+....
T Consensus 403 p~~~~W~~va~m~~~--------------r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R 466 (571)
T KOG4441|consen 403 PVTNKWTPVAPMLTR--------------RSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR 466 (571)
T ss_pred CCCCcccccCCCCcc--------------eeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc
Confidence 877765444332210 011222222 677778887554 5788998876532 2222111
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCc-----EEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCc-----
Q 015438 270 SDVNTVCFGDESGHLIYSGSDDNL-----CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA----- 339 (407)
Q Consensus 270 ~~v~~i~~s~~~~~~l~s~~~d~~-----i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~----- 339 (407)
... .++. -++.+.+.|+.|+. |..||.... ....+..+......+..+.+ ++...+.|+.||.
T Consensus 467 ~~~-g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~--~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ 539 (571)
T KOG4441|consen 467 SGF-GVAV--LNGKIYVVGGFDGTSALSSVERYDPETN--QWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNT 539 (571)
T ss_pred ccc-eEEE--ECCEEEEECCccCCCccceEEEEcCCCC--ceeEcccCccccccccEEEE--CCEEEEEecccCccccce
Confidence 222 2344 46778888888763 677887622 12222223223333333333 6777788887653
Q ss_pred EEEEECCC
Q 015438 340 IKLWDIRK 347 (407)
Q Consensus 340 i~iwd~~~ 347 (407)
|..||..+
T Consensus 540 ve~ydp~~ 547 (571)
T KOG4441|consen 540 VECYDPET 547 (571)
T ss_pred eEEcCCCC
Confidence 55665544
No 377
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.06 E-value=0.2 Score=44.32 Aligned_cols=235 Identities=11% Similarity=0.123 Sum_probs=105.8
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEc-CCCeEEeEeeecc--ccceEEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDV-ERGWKIQKDILAK--SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~ 200 (407)
...+..|.|..+..-+++|. .+. |+.. +.|+......... .......++.|..+ ..+++ +..+.| +...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~l-l~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGLL-LHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTEE-EEESST
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCceE-EEecCC
Confidence 45889999997666677764 453 3333 3332222211111 11234677887543 34444 445533 333333
Q ss_pred CceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeee-eeeeccCCCeEEEEecC
Q 015438 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-LRILAHTSDVNTVCFGD 279 (407)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~i~~s~ 279 (407)
++.=....+... ..+....+....++..++ ++..|.|+.=. ..++.- .....-.+.+..+.-+
T Consensus 90 G~tW~~v~l~~~-------------lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~- 153 (302)
T PF14870_consen 90 GKTWERVPLSSK-------------LPGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS- 153 (302)
T ss_dssp TSS-EE----TT--------------SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE-S----EEEEEE--
T ss_pred CCCcEEeecCCC-------------CCCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC-
Confidence 332111111100 111223333333443333 34455444322 223221 2223445678888887
Q ss_pred CCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEE-CCCCCCcccccCCC
Q 015438 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD-IRKMSSNASCNLGF 358 (407)
Q Consensus 280 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~ 358 (407)
+++.+++++.....+.-||.- ...-...-+.-...|..+.|+|++...+.+ ..|.|++=+ ....+.-.......
T Consensus 154 ~dG~~vavs~~G~~~~s~~~G----~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~ 228 (302)
T PF14870_consen 154 SDGRYVAVSSRGNFYSSWDPG----QTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPI 228 (302)
T ss_dssp TTS-EEEEETTSSEEEEE-TT-----SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TT
T ss_pred CCCcEEEEECcccEEEEecCC----CccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCc
Confidence 889988888777777788853 111111122245689999999998876654 788888877 22222211111123
Q ss_pred ccccccceeeeCCCCCCccCCCCCcce
Q 015438 359 RSYEWDYRWMDYPPQARDLKHPCDQSV 385 (407)
Q Consensus 359 ~~~~~~v~~~~~~~~~~~l~~~~~~~v 385 (407)
....+.+-.+++.++..+++++..+.+
T Consensus 229 ~~~~~~~ld~a~~~~~~~wa~gg~G~l 255 (302)
T PF14870_consen 229 KTNGYGILDLAYRPPNEIWAVGGSGTL 255 (302)
T ss_dssp SS--S-EEEEEESSSS-EEEEESTT-E
T ss_pred ccCceeeEEEEecCCCCEEEEeCCccE
Confidence 345666788899998888887766544
No 378
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.018 Score=57.43 Aligned_cols=105 Identities=11% Similarity=0.134 Sum_probs=73.9
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceecccccccccc
Q 015438 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (407)
Q Consensus 135 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 214 (407)
.+..++.|+..|.|-..|+... +..........++|++++|+.+|+.++.|-.+|.|.+||+..++....+.....+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap- 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP- 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc-
Confidence 4567889999999999887653 2222234455678999999999999999999999999999988765554332211
Q ss_pred ceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEc
Q 015438 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (407)
Q Consensus 215 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 256 (407)
++ .|.-+.+..++..++++...|. +|.+
T Consensus 175 -----------~t-~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 175 -----------VT-GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred -----------cc-eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 22 3444455555667888877776 4544
No 379
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.00 E-value=0.077 Score=38.65 Aligned_cols=100 Identities=19% Similarity=0.209 Sum_probs=62.5
Q ss_pred eEEEEECC---CC-CEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 015438 127 AYVSQFSA---DG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (407)
Q Consensus 127 v~~~~~s~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~ 202 (407)
|.++++.. +| +.|++|+.|..|+||+-+. .+..... ...|+++.-... ..++.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~e----~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEITE----TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEec----ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee
Confidence 45555543 43 5799999999999998553 3333221 225777776655 668999999999999764332
Q ss_pred eeccccccccccceeeeecCCCCccccEEEEEEeC---CC-CEEEEeeCCCeEE
Q 015438 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DG-RELVAGSSDDCIY 252 (407)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~~~~~dg~i~ 252 (407)
. +.... ..+.++.+.. +| ..|++|-.+|.|-
T Consensus 75 W----RiKSK---------------~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 W----RIKSK---------------NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred e----eeccC---------------CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1 11111 1355555543 33 3688888888764
No 380
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.98 E-value=0.22 Score=43.72 Aligned_cols=201 Identities=14% Similarity=0.136 Sum_probs=110.2
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEee-----------eccccceEEEEEE---ECCCCCeEEEEeC
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI-----------LAKSLRWTVTDTS---LSPDQRHLVYASM 189 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~~v~~~~---~sp~~~~l~~~~~ 189 (407)
...|..+...|+-+.|++-+ |+.+.++++..-....... ........+..++ -......|+++ .
T Consensus 35 ~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~ 112 (275)
T PF00780_consen 35 LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-V 112 (275)
T ss_pred cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-E
Confidence 33499999999887777664 5999999987532222100 0111111244444 12233444444 4
Q ss_pred CCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeecc-
Q 015438 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH- 268 (407)
Q Consensus 190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~- 268 (407)
...|.+|..............+ +. -...+.+++|. ++.|++|..++ ..+.|+.++.....+...
T Consensus 113 kk~i~i~~~~~~~~~f~~~~ke----~~--------lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~ 177 (275)
T PF00780_consen 113 KKKILIYEWNDPRNSFSKLLKE----IS--------LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSD 177 (275)
T ss_pred CCEEEEEEEECCcccccceeEE----EE--------cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccC
Confidence 4588888876532110000000 01 11268889998 55788887665 889999877653332111
Q ss_pred -----------CCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceee--eeccccCCeEEEEecCCCCEEEEEe
Q 015438 269 -----------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG--VLMGHLEGITFIDSRGDGRYLISNG 335 (407)
Q Consensus 269 -----------~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~s~~ 335 (407)
..++..+.. +++.+|++- |..-.+.|. .|.+.. .+.- ...+.++++ ...||++.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~--~~~e~Ll~~--~~~g~fv~~-----~G~~~r~~~i~W-~~~p~~~~~--~~pyli~~~ 245 (275)
T PF00780_consen 178 SSSSFKSRNSSSKPLGIFQL--SDNEFLLCY--DNIGVFVNK-----NGEPSRKSTIQW-SSAPQSVAY--SSPYLIAFS 245 (275)
T ss_pred CcchhhhcccCCCceEEEEe--CCceEEEEe--cceEEEEcC-----CCCcCcccEEEc-CCchhEEEE--ECCEEEEEC
Confidence 123444555 334555542 444455555 333332 2221 234556666 345777776
Q ss_pred CCCcEEEEECCCCCCcccc
Q 015438 336 KDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~ 354 (407)
. +.|.||++.+++.++.+
T Consensus 246 ~-~~iEV~~~~~~~lvQ~i 263 (275)
T PF00780_consen 246 S-NSIEVRSLETGELVQTI 263 (275)
T ss_pred C-CEEEEEECcCCcEEEEE
Confidence 5 55999999998776654
No 381
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.24 Score=44.05 Aligned_cols=202 Identities=14% Similarity=0.081 Sum_probs=113.1
Q ss_pred EECCCCCE-EEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCcee-cccc
Q 015438 131 QFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME-SLAN 208 (407)
Q Consensus 131 ~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~ 208 (407)
.|.++... +.+--..+.|.-|+..++.... ..... .+.++..-..+..|+++.. | +.+++.+++... ....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--~~~p~---~~~~~~~~d~~g~Lv~~~~-g-~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--FPSPG---GFSSGALIDAGGRLIACEH-G-VRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--EECCC---CcccceeecCCCeEEEEcc-c-cEEEeccCCceeEEecc
Confidence 47777764 4445557889999987663221 11222 2344443334445555433 2 566776555442 1111
Q ss_pred ccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC-----------CCeEEEEEcCCCeeeeeeeccCCCeEEEEe
Q 015438 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (407)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 277 (407)
... +......+.+...|+|.+.+.... -|.|+.+|. .+..++.+..+-..-+.|+|
T Consensus 104 ~~~------------~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~ 170 (307)
T COG3386 104 PED------------GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAF 170 (307)
T ss_pred ccC------------CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEE
Confidence 110 111135677888999986555433 134666665 45555555555556688999
Q ss_pred cCCCCCEEEEE-eCCCcEEEEeCcc--cCCCCce-eeeeccccCCeEEEEecCCCCEEEEEeCCC-cEEEEECCCCCCcc
Q 015438 278 GDESGHLIYSG-SDDNLCKVWDRRC--LNVKGKP-AGVLMGHLEGITFIDSRGDGRYLISNGKDQ-AIKLWDIRKMSSNA 352 (407)
Q Consensus 278 s~~~~~~l~s~-~~d~~i~vwd~~~--~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~ 352 (407)
| ++++.|+.+ +..+.|.-|++.. ....+.. ...+....+..-.++...+|.+.+++-.+| .|.+|+.. ++...
T Consensus 171 S-pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~ 248 (307)
T COG3386 171 S-PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLG 248 (307)
T ss_pred C-CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEE
Confidence 9 666555555 4558888888752 1111111 122222345556777888898876555554 89999988 66655
Q ss_pred cc
Q 015438 353 SC 354 (407)
Q Consensus 353 ~~ 354 (407)
.+
T Consensus 249 ~i 250 (307)
T COG3386 249 EI 250 (307)
T ss_pred EE
Confidence 44
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.91 E-value=0.0042 Score=37.61 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=28.7
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVE 154 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 154 (407)
...|.+++|+|..++||.+..+|.|.||.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 5679999999999999999999999999983
No 383
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.90 E-value=0.03 Score=54.55 Aligned_cols=150 Identities=11% Similarity=0.116 Sum_probs=84.9
Q ss_pred EEEEEEECCCCCeEEEEe------CCC--eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEE
Q 015438 171 TVTDTSLSPDQRHLVYAS------MSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (407)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~------~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 242 (407)
.+.+.+++|+++.++... .|. .|.+++... ....+.. +. ....-.|+|+|+.|
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~----------------g~--~~t~PsWspDG~~l 411 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLE----------------GH--SLTRPSWSLDADAV 411 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeec----------------CC--CCCCceECCCCCce
Confidence 578899999999988765 233 455555422 1111110 01 35667899998877
Q ss_pred EEeeCC------------CeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCc-ee
Q 015438 243 VAGSSD------------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PA 309 (407)
Q Consensus 243 ~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~ 309 (407)
++.... +.+++.++..+.... ...+.|..+.|| ++|..++... ++.|.+--+.... .+. .+
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wS-pDG~RiA~i~-~g~v~Va~Vvr~~-~G~~~l 485 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLS-RDGVRAAMII-GGKVYLAVVEQTE-DGQYAL 485 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEEC-CCCCEEEEEE-CCEEEEEEEEeCC-CCceee
Confidence 666432 334444554443322 235679999999 7888776655 4677773322110 222 11
Q ss_pred ---eee-ccccCCeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 015438 310 ---GVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (407)
Q Consensus 310 ---~~~-~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~ 346 (407)
..+ .+....+..+.|.+++.++ .+..++...+|.+.
T Consensus 486 ~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 486 TNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred cccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 112 2223346889999998854 55555555555544
No 384
>PHA03098 kelch-like protein; Provisional
Probab=96.90 E-value=0.073 Score=51.87 Aligned_cols=188 Identities=12% Similarity=0.078 Sum_probs=91.5
Q ss_pred CCCCEEEEEeCCC------eEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCC-----CeEEEEECCCCc
Q 015438 134 ADGSLFVAGFQAS------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGT 202 (407)
Q Consensus 134 ~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----g~i~vwd~~~~~ 202 (407)
.++..++.|+.++ .+..||..+.... ..............+. -+++..+.||.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3456667776542 5778888775332 2111111111122222 267777888765 357778887766
Q ss_pred eeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC------CeEEEEEcCCCeeee--eeeccCCCeEE
Q 015438 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLSL--RILAHTSDVNT 274 (407)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~v~~ 274 (407)
.......... ..++ +++ .-++++.+.|+.+ ..+..||+.+.+-.. .+...... .+
T Consensus 370 W~~~~~lp~~----------r~~~-----~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~ 432 (534)
T PHA03098 370 WREEPPLIFP----------RYNP-----CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GC 432 (534)
T ss_pred eeeCCCcCcC----------Cccc-----eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ce
Confidence 5433222110 0011 111 2256666777632 458899988764322 11111111 12
Q ss_pred EEecCCCCCEEEEEeCC--------CcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCC-----CcEE
Q 015438 275 VCFGDESGHLIYSGSDD--------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIK 341 (407)
Q Consensus 275 i~~s~~~~~~l~s~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-----g~i~ 341 (407)
++. .++.+++.|+.+ ..+.+||..... ...+..+.........+.+ +++.++.||.+ ..|.
T Consensus 433 ~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~ 506 (534)
T PHA03098 433 AIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIE 506 (534)
T ss_pred EEE--ECCEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeE
Confidence 233 346677777643 238888886221 1111111111111122233 67777777754 4677
Q ss_pred EEECCC
Q 015438 342 LWDIRK 347 (407)
Q Consensus 342 iwd~~~ 347 (407)
+||..+
T Consensus 507 ~yd~~~ 512 (534)
T PHA03098 507 VYDDKT 512 (534)
T ss_pred EEeCCC
Confidence 777665
No 385
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.87 E-value=0.26 Score=42.69 Aligned_cols=147 Identities=20% Similarity=0.170 Sum_probs=87.9
Q ss_pred CceEEEEECCCCCEEEEEe---CCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEE-CCC
Q 015438 125 SRAYVSQFSADGSLFVAGF---QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD-VGS 200 (407)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd-~~~ 200 (407)
..+...+++++++.+|... ....+.++..... ..... ....++...|++++...++...+....++. ...
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~----~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL----TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec----cCCccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence 3688999999999887765 3345666654433 22221 112588889999988777766666666664 233
Q ss_pred CceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEee---CCCeEEEEEcC---CC------eeeeeeecc
Q 015438 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLE---AN------KLSLRILAH 268 (407)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~i~d~~---~~------~~~~~~~~~ 268 (407)
+......- ... .....|..+.+||||..++... .++.|++--+. .+ ..+......
T Consensus 98 g~~~~~~v----------~~~---~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 98 GTGEPVEV----------DWP---GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred CcceeEEe----------ccc---ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence 32211110 000 0111799999999999877765 35777777553 22 111122233
Q ss_pred CCCeEEEEecCCCCCEEEEEeCC
Q 015438 269 TSDVNTVCFGDESGHLIYSGSDD 291 (407)
Q Consensus 269 ~~~v~~i~~s~~~~~~l~s~~~d 291 (407)
...+.++.|. .++.+++.+...
T Consensus 165 ~~~v~~v~W~-~~~~L~V~~~~~ 186 (253)
T PF10647_consen 165 LSDVTDVAWS-DDSTLVVLGRSA 186 (253)
T ss_pred cCcceeeeec-CCCEEEEEeCCC
Confidence 5688999998 666666655543
No 386
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.84 E-value=0.27 Score=42.38 Aligned_cols=203 Identities=10% Similarity=0.165 Sum_probs=119.3
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceecc
Q 015438 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (407)
Q Consensus 127 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~ 206 (407)
+.-++|-+.+.+...-. ....-+|..+-...+.... ..+....+.+++|+|+.+.|++....+.-.|+=...|+....
T Consensus 45 ~f~~a~~k~~~~~~~~~-~r~~~~~l~~y~~~i~akp-i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt 122 (316)
T COG3204 45 VFPCAWFKAGQTNGLDL-SRYIARYLLEYRARIDAKP-ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT 122 (316)
T ss_pred eeeeEEEeccccccccc-cchhhhccCCceEEEeccc-cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEE
Confidence 34445555444333221 1225556544322222211 122333599999999999999988888777777778888777
Q ss_pred ccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeee-------ee--cc-CCCeEEEE
Q 015438 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-------IL--AH-TSDVNTVC 276 (407)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~--~~-~~~v~~i~ 276 (407)
..+...+ ..-.+.+..++++.++--.+..++++.+.....+.. +. .+ ......++
T Consensus 123 iPL~g~~---------------DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA 187 (316)
T COG3204 123 IPLTGFS---------------DPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLA 187 (316)
T ss_pred ecccccC---------------ChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeee
Confidence 7665433 234577777887777777788888887765532211 11 12 55678899
Q ss_pred ecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccc-------cCCeEEEEecC-CCCEEEEEeCCCcEEEEECCCC
Q 015438 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-------LEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKM 348 (407)
Q Consensus 277 ~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~~i~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~ 348 (407)
|. +..+.|+.+-.-+=+.||-..... ..-.+.....+ -..|.++.|++ .+..|+-+.+++.+.-.|..-.
T Consensus 188 ~d-~~~~~l~~aKEr~P~~I~~~~~~~-~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 188 WD-PVDHRLFVAKERNPIGIFEVTQSP-SSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cC-CCCceEEEEEccCCcEEEEEecCC-cccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 97 555556666666666666554110 11111111111 23467788876 5667777778888888886654
No 387
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.096 Score=44.71 Aligned_cols=146 Identities=17% Similarity=0.201 Sum_probs=92.4
Q ss_pred EEEEEEeCCC-CEEEEeeCCCe-EEEEEcCCCeeeeeeeccCCC--eEEEEecCCCCCEEEEEeCC-----CcEEEEeCc
Q 015438 230 IFSLKFSTDG-RELVAGSSDDC-IYVYDLEANKLSLRILAHTSD--VNTVCFGDESGHLIYSGSDD-----NLCKVWDRR 300 (407)
Q Consensus 230 v~~~~~s~~~-~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--v~~i~~s~~~~~~l~s~~~d-----~~i~vwd~~ 300 (407)
...|.|+|.- .-++.+-.-|+ ..++|..+.+....+...++. .-.=+|| ++|.+|+..-.| |.|-|||.+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs-~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFS-PDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccC-CCCcEEEeecCCCCCCCceEEEEecc
Confidence 3457788854 45666666554 678898887765555432222 1123787 889998876544 789999998
Q ss_pred ccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeC------C------------CcEEEEECCCCCCcccccCCCcccc
Q 015438 301 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK------D------------QAIKLWDIRKMSSNASCNLGFRSYE 362 (407)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~------d------------g~i~iwd~~~~~~~~~~~~~~~~~~ 362 (407)
. ..+.+..+..|.-....+.|.+||+.|+.+.. | -++.+-|-.++..+...........
T Consensus 149 ~---~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 149 E---GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred c---ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 2 45667788889888899999999999987652 1 1222333333333332222222344
Q ss_pred ccceeeeCCCCCCccCC
Q 015438 363 WDYRWMDYPPQARDLKH 379 (407)
Q Consensus 363 ~~v~~~~~~~~~~~l~~ 379 (407)
..++.++..+++++++.
T Consensus 226 lSiRHld~g~dgtvwfg 242 (366)
T COG3490 226 LSIRHLDIGRDGTVWFG 242 (366)
T ss_pred cceeeeeeCCCCcEEEE
Confidence 56777777777777754
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.0048 Score=61.32 Aligned_cols=101 Identities=21% Similarity=0.341 Sum_probs=75.4
Q ss_pred CCCEEEEeeCCCeEEEEEcCCC-eeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeecccc
Q 015438 238 DGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (407)
Q Consensus 238 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 316 (407)
.+..++.|+..|.|...|.... .+...=..-.++|++++|+ .+|.+++.|-.+|.|.+||+. .+++++.+..|.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn-~dg~~l~~G~~~G~V~v~D~~----~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFN-QDGSLLLAGLGDGHVTVWDMH----RAKILKVITEHG 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEec-CCCceeccccCCCcEEEEEcc----CCcceeeeeecC
Confidence 3457889999999999998753 1112222346799999997 999999999999999999997 778888888776
Q ss_pred CCeEEEE---ecCCCCEEEEEeCCCcEEEEEC
Q 015438 317 EGITFID---SRGDGRYLISNGKDQAIKLWDI 345 (407)
Q Consensus 317 ~~i~~~~---~s~~~~~l~s~~~dg~i~iwd~ 345 (407)
.+.+++- +..++..++++...|. +|.+
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6655544 4556667888877776 5553
No 389
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.74 E-value=0.45 Score=43.66 Aligned_cols=203 Identities=13% Similarity=0.051 Sum_probs=90.9
Q ss_pred CCCEEEEEe-CCCeEEEEEcCCC---eEEeEeeeccc-c----ceEEEEEEECCCCCeEEEE--eC----CCeEEEEECC
Q 015438 135 DGSLFVAGF-QASQIRIYDVERG---WKIQKDILAKS-L----RWTVTDTSLSPDQRHLVYA--SM----SPIVHIVDVG 199 (407)
Q Consensus 135 ~~~~l~~~~-~dg~i~iwd~~~~---~~~~~~~~~~~-~----~~~v~~~~~sp~~~~l~~~--~~----dg~i~vwd~~ 199 (407)
+.++|+..+ ..+.|+|+|+.+. -.+.+.+.... + -.....+---|+|+.++++ .. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 5788999998753 12233222100 0 1122223334789888875 22 2467788877
Q ss_pred CCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC--------------------CCeEEEEEcCCC
Q 015438 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--------------------DDCIYVYDLEAN 259 (407)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--------------------dg~i~i~d~~~~ 259 (407)
+.+......... +...--..+-|.|..+.+++... ..++.+||+.+.
T Consensus 166 tf~v~g~We~~~-------------~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r 232 (461)
T PF05694_consen 166 TFEVKGRWEKDR-------------GPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR 232 (461)
T ss_dssp T--EEEE--SB--------------TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred cccccceeccCC-------------CCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence 655443222111 11112355677777777776542 347999999999
Q ss_pred eeeeeeeccCC--CeEEEEec-CCCCCE-EEEEeCCCcEEEEeC-cccCCCCceeeeecc-----------------ccC
Q 015438 260 KLSLRILAHTS--DVNTVCFG-DESGHL-IYSGSDDNLCKVWDR-RCLNVKGKPAGVLMG-----------------HLE 317 (407)
Q Consensus 260 ~~~~~~~~~~~--~v~~i~~s-~~~~~~-l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~~-----------------~~~ 317 (407)
+.+.++..... ....|.|. .++..+ ++.+-...+|..|-. ....-..+.+..+.. -..
T Consensus 233 ~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~ 312 (461)
T PF05694_consen 233 KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP 312 (461)
T ss_dssp EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE--
T ss_pred cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCC
Confidence 99988875432 34566664 122233 333334444444432 211101112222211 123
Q ss_pred CeEEEEecCCCCEEEEEe-CCCcEEEEECCCCCC
Q 015438 318 GITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSS 350 (407)
Q Consensus 318 ~i~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~ 350 (407)
-|+.|..|.|.++|..++ ..|.|+.||+.....
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 478999999999998777 599999999987543
No 390
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.72 E-value=0.0026 Score=52.06 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=68.2
Q ss_pred CCeEEEEeCCCeEEEEECCCCce-eccccccccccceeeeecCCCCccccEEE-EEEeCCCCEEEEeeCCCeEEEEEcCC
Q 015438 181 QRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFS-LKFSTDGRELVAGSSDDCIYVYDLEA 258 (407)
Q Consensus 181 ~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~i~d~~~ 258 (407)
+..++.|+.+|.|++|....... ....... .. .|.+ +.--.++.+..++..||.|+.|++.-
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~---------------~e-~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p 133 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG---------------EE-SIDLGIPNGRDSSLGCVGAQDGRIRACNIKP 133 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcc---------------cc-cceeccccccccceeEEeccCCceeeecccc
Confidence 56799999999999998872211 1111000 00 1222 22223556888999999999999998
Q ss_pred CeeeeeeeccC-CCeEEEEecCCCCCEEEEE--eCCCcEEEEeCc
Q 015438 259 NKLSLRILAHT-SDVNTVCFGDESGHLIYSG--SDDNLCKVWDRR 300 (407)
Q Consensus 259 ~~~~~~~~~~~-~~v~~i~~s~~~~~~l~s~--~~d~~i~vwd~~ 300 (407)
.+.+...-.|. .++.....+ ..+..++.+ |.|..++.|++.
T Consensus 134 ~k~~g~~g~h~~~~~e~~ivv-~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 134 NKVLGYVGQHNFESGEELIVV-GSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred CceeeeeccccCCCcceeEEe-cCCceEEeeccccchhhhhcchh
Confidence 88777766666 555555555 566677777 778888888875
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.67 E-value=0.35 Score=41.44 Aligned_cols=182 Identities=16% Similarity=0.124 Sum_probs=106.1
Q ss_pred ceEEEEECCCCCEEEEEeCCC--eEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCce
Q 015438 126 RAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (407)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~ 203 (407)
=...+.|..+|.++-+.+.-| .|+.+|+.+++...........- --.++.. +++...-.=.++...+||..+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F--gEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF--GEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc--ceeEEEE-CCEEEEEEecCCeEEEEccccceE
Confidence 346778878888888887766 69999999987665444333221 1122222 334444445788999999988766
Q ss_pred eccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccC-----CCeEEEEec
Q 015438 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFG 278 (407)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~i~~s 278 (407)
...+.... .=..++ .+++.|+.......++++|..+.+....+.... ..++-+.|-
T Consensus 123 ~~~~~y~~-----------------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i 183 (264)
T PF05096_consen 123 IGTFPYPG-----------------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI 183 (264)
T ss_dssp EEEEE-SS-----------------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred EEEEecCC-----------------cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence 55443221 223455 466667776667789999998887766654321 235556663
Q ss_pred CCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeecc------------c---cCCeEEEEecCCCCEEEEEe
Q 015438 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG------------H---LEGITFIDSRGDGRYLISNG 335 (407)
Q Consensus 279 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~------------~---~~~i~~~~~s~~~~~l~s~~ 335 (407)
+|.+.|=.-....|...|.. +++.+..+.- + ..-.+.||++|....|...|
T Consensus 184 --~G~IyANVW~td~I~~Idp~----tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 184 --NGKIYANVWQTDRIVRIDPE----TGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp --TTEEEEEETTSSEEEEEETT----T-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred --cCEEEEEeCCCCeEEEEeCC----CCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 56555555555566666766 5555543310 0 23468999998776665555
No 392
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.58 E-value=0.59 Score=42.92 Aligned_cols=191 Identities=13% Similarity=0.126 Sum_probs=87.3
Q ss_pred EEEECCCCCEEEEEeC------CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeC-------------
Q 015438 129 VSQFSADGSLFVAGFQ------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM------------- 189 (407)
Q Consensus 129 ~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------------- 189 (407)
.+-.-|+|+.++++-. -|.+.++|-++-+.............--.++.|.|..+.++++..
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence 3445678888887532 245888887765444433332233334567788888888887643
Q ss_pred -------CCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCC--CCE-EEEeeCCCeEEEEEc-CC
Q 015438 190 -------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRE-LVAGSSDDCIYVYDL-EA 258 (407)
Q Consensus 190 -------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~-l~~~~~dg~i~i~d~-~~ 258 (407)
..++.+||+.+.+..+.+.+... ......+.|..+ ..+ ++.+.-..+|..|-- ..
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~--------------g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~ 279 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEE--------------GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD 279 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEEES-TT--------------EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET
T ss_pred HhhcccccCeEEEEECCCCcEeeEEecCCC--------------CCceEEEEecCCCCccceEEEEeccceEEEEEEcCC
Confidence 24899999999988777665431 113456666554 333 333334445555543 33
Q ss_pred Ce----eeeeeec-----------------cCCCeEEEEecCCCCCEEEEEe-CCCcEEEEeCcccCCCCceeeeec-c-
Q 015438 259 NK----LSLRILA-----------------HTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLM-G- 314 (407)
Q Consensus 259 ~~----~~~~~~~-----------------~~~~v~~i~~s~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~-~- 314 (407)
++ .+..+.. -..-|+.|..| .+.++|..++ .+|.|+.||+.... ..+.+.... +
T Consensus 280 g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS-lDDrfLYvs~W~~GdvrqYDISDP~-~Pkl~gqv~lGG 357 (461)
T PF05694_consen 280 GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS-LDDRFLYVSNWLHGDVRQYDISDPF-NPKLVGQVFLGG 357 (461)
T ss_dssp TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE--TTS-EEEEEETTTTEEEEEE-SSTT-S-EEEEEEE-BT
T ss_pred CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc-cCCCEEEEEcccCCcEEEEecCCCC-CCcEEeEEEECc
Confidence 32 1222211 13457899998 6666666555 68999999997432 222222211 1
Q ss_pred --------------ccCCeEEEEecCCCCEEEEEe
Q 015438 315 --------------HLEGITFIDSRGDGRYLISNG 335 (407)
Q Consensus 315 --------------~~~~i~~~~~s~~~~~l~s~~ 335 (407)
..+...-+..|-||+.|...+
T Consensus 358 ~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 358 SIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 122346778888998876554
No 393
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.48 E-value=0.73 Score=42.80 Aligned_cols=207 Identities=13% Similarity=0.162 Sum_probs=114.2
Q ss_pred CCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeC-----CCCEEEEeeCCCeEEEE
Q 015438 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVY 254 (407)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~i~ 254 (407)
+...|++|+.+|.++||+...+.....-.+.+. .-..+|..+..-+ +...||+ -.-..+.+|
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~------------~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY 102 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET------------QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVY 102 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE------------ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEE
Confidence 456899999999999999865442211111000 0122566666543 2234444 556778888
Q ss_pred EcCCC--e-------eeeeeeccC--CCeEEEEecC---CC-CCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCe
Q 015438 255 DLEAN--K-------LSLRILAHT--SDVNTVCFGD---ES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (407)
Q Consensus 255 d~~~~--~-------~~~~~~~~~--~~v~~i~~s~---~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i 319 (407)
.+... . .+..+..|. .....+++-| .. ..++..=+.||.+.+|+-+ .......+.+ .--.
T Consensus 103 ~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe----~~~f~~~lp~-~llP 177 (418)
T PF14727_consen 103 SVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE----SFAFSRFLPD-FLLP 177 (418)
T ss_pred EEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC----cEEEEEEcCC-CCCC
Confidence 87321 1 122222332 1222333322 22 4678888999999999975 2221222222 2223
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccc---------------------cCCCccccccceeeeCCCCCCccC
Q 015438 320 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC---------------------NLGFRSYEWDYRWMDYPPQARDLK 378 (407)
Q Consensus 320 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~l~ 378 (407)
.-+.|.+.-..|++++.+..+..|........... ....+....++..+.++.....+.
T Consensus 178 gPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~Iv 257 (418)
T PF14727_consen 178 GPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIV 257 (418)
T ss_pred cCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEE
Confidence 45678888888999999999999986543222110 011222223344455554433444
Q ss_pred CCCCcceEEEeCCccceeeEEEeeCC
Q 015438 379 HPCDQSVATYKGHSVLRTLIRCHFSP 404 (407)
Q Consensus 379 ~~~~~~v~~~~gh~~~~~~~~~~fsp 404 (407)
+=+.+.+..++.....++..|..+.|
T Consensus 258 vLger~Lf~l~~~G~l~~~krLd~~p 283 (418)
T PF14727_consen 258 VLGERSLFCLKDNGSLRFQKRLDYNP 283 (418)
T ss_pred EEecceEEEEcCCCeEEEEEecCCce
Confidence 44567777777777777777776655
No 394
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.40 E-value=0.68 Score=43.50 Aligned_cols=160 Identities=18% Similarity=0.245 Sum_probs=87.5
Q ss_pred EEEEEEECCCCCeEEEE-eCCC----eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEe
Q 015438 171 TVTDTSLSPDQRHLVYA-SMSP----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (407)
Q Consensus 171 ~v~~~~~sp~~~~l~~~-~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 245 (407)
.+..+.+||+++++|.+ +..| .|+++|+.+++...-. +.. .....+.|.++++.|+..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~----------------~~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IEN----------------PKFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEE----------------EESEEEEECTTSSEEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccc----------------cccceEEEeCCCCEEEEE
Confidence 34578899999999876 3333 6999999998653211 000 012339999998877665
Q ss_pred eCC-----------CeEEEEEcCCCeee--eeeeccCCC--eEEEEecCCCCCEEEEEeC---C-CcEEEEeCcccCCCC
Q 015438 246 SSD-----------DCIYVYDLEANKLS--LRILAHTSD--VNTVCFGDESGHLIYSGSD---D-NLCKVWDRRCLNVKG 306 (407)
Q Consensus 246 ~~d-----------g~i~i~d~~~~~~~--~~~~~~~~~--v~~i~~s~~~~~~l~s~~~---d-~~i~vwd~~~~~~~~ 306 (407)
..+ ..|+.|.+.+...- ..+...... ...+..+ .++++++.... + ..+.+.|+.......
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPD 266 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS
T ss_pred EeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCc
Confidence 433 24888888776432 334333333 4677887 77777665432 2 357777876210001
Q ss_pred ceeeeeccccCCe-EEEEecCCCCEEEEEe---CCCcEEEEECCCCC
Q 015438 307 KPAGVLMGHLEGI-TFIDSRGDGRYLISNG---KDQAIKLWDIRKMS 349 (407)
Q Consensus 307 ~~~~~~~~~~~~i-~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~ 349 (407)
.....+......+ ..+... .+.+++... ..+.|.-.++....
T Consensus 267 ~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp -SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred CCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccc
Confidence 2233333333333 334333 444444332 34667777777755
No 395
>PHA02790 Kelch-like protein; Provisional
Probab=96.36 E-value=0.44 Score=45.71 Aligned_cols=184 Identities=10% Similarity=0.025 Sum_probs=89.0
Q ss_pred CCCEEEEEeCCC-----eEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCC--CeEEEEECCCCceeccc
Q 015438 135 DGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHIVDVGSGTMESLA 207 (407)
Q Consensus 135 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--g~i~vwd~~~~~~~~~~ 207 (407)
++..+++|+.++ .+..||..++..... ............+. -++...++|+.+ ..+..||..+++.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~-~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPI-PPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEEC-CCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455667776543 477788877532221 11111111122222 367777777754 35777887665443332
Q ss_pred cccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCC---eEEEEEcCCCeeee--eeeccCCCeEEEEecCCCC
Q 015438 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSL--RILAHTSDVNTVCFGDESG 282 (407)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~--~~~~~~~~v~~i~~s~~~~ 282 (407)
.+... ......+ .-+|++.+.|+.++ .+..||.++.+-.. .+....... +++. -++
T Consensus 348 ~l~~~--------------r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~~--~~~ 408 (480)
T PHA02790 348 SLLKP--------------RCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CALV--FGR 408 (480)
T ss_pred CCCCC--------------CcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEEE--ECC
Confidence 22110 0011112 22577777777543 47789987664322 121111111 2222 346
Q ss_pred CEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCC-----CcEEEEECCC
Q 015438 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIRK 347 (407)
Q Consensus 283 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~ 347 (407)
.+.+.|+ .+.+||.... ....+..+.........+.+ +++..+.||.+ .+|.+||..+
T Consensus 409 ~IYv~GG---~~e~ydp~~~--~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 409 RLFLVGR---NAEFYCESSN--TWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EEEEECC---ceEEecCCCC--cEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence 6666664 5678887622 11222222211222223333 67778888754 3466666654
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.27 E-value=0.34 Score=47.35 Aligned_cols=193 Identities=16% Similarity=0.155 Sum_probs=105.1
Q ss_pred CCCCCEEEEEeCC------CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCC-C-----eEEEEECCC
Q 015438 133 SADGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P-----IVHIVDVGS 200 (407)
Q Consensus 133 s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g-----~i~vwd~~~ 200 (407)
+..+..++.|+.+ ..+..||..++..... .... ....-.+++. -++...++|+.+ | .+..||..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~-a~m~-~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSL-APMP-SPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeec-CCCC-cccccccEEE-ECCEEEEEccccCCCcccceEEEecCCC
Confidence 4456677777776 3588899887622221 1111 1112233333 256788888888 3 678888888
Q ss_pred CceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCC-----eEEEEEcCCCeeeeeeeccCCCeEEE
Q 015438 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLSLRILAHTSDVNTV 275 (407)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~v~~i 275 (407)
++......+.... ....+ .. -+|.+.++|+.|| +|..||..+.+--..- .........
T Consensus 359 ~~W~~~a~M~~~R------------~~~~v--~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~ 421 (571)
T KOG4441|consen 359 NQWTPVAPMNTKR------------SDFGV--AV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGH 421 (571)
T ss_pred CceeccCCccCcc------------cccee--EE--ECCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeee
Confidence 7765543332211 11111 11 1677888898886 4788888776532111 111122222
Q ss_pred EecCCCCCEEEEEeCCC------cEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCc-----EEEEE
Q 015438 276 CFGDESGHLIYSGSDDN------LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-----IKLWD 344 (407)
Q Consensus 276 ~~s~~~~~~l~s~~~d~------~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~-----i~iwd 344 (407)
....-++.+.++||.++ .+..||.... ....+..+..-........+ ++...+.||.|+. |..||
T Consensus 422 gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 422 GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred EEEEECCEEEEEcCcCCCccccceEEEEcCCCC--ceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEc
Confidence 22224688888888664 4677777632 12222222222222222333 6778888887763 67788
Q ss_pred CCCCC
Q 015438 345 IRKMS 349 (407)
Q Consensus 345 ~~~~~ 349 (407)
..+.+
T Consensus 498 p~~~~ 502 (571)
T KOG4441|consen 498 PETNQ 502 (571)
T ss_pred CCCCc
Confidence 77643
No 397
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.081 Score=53.47 Aligned_cols=153 Identities=8% Similarity=-0.003 Sum_probs=92.7
Q ss_pred EEEEEEECCCCCeEEEE--eCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCC-EEEEeeC
Q 015438 171 TVTDTSLSPDQRHLVYA--SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSS 247 (407)
Q Consensus 171 ~v~~~~~sp~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~ 247 (407)
++..+...+|+...++. +.+-.|..||+++-................ .-....-..++.|+|.-. ..++...
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~t-----s~ek~vf~~~~~wnP~vp~n~av~l~ 176 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSAT-----SFEKPVFQLKNVWNPLVPLNSAVDLS 176 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccc-----hhccccccccccccCCccchhhhhcc
Confidence 45666667787665554 344489999998644332211110000000 000112456789998543 4666778
Q ss_pred CCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccc----cCCeEEEE
Q 015438 248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH----LEGITFID 323 (407)
Q Consensus 248 dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~----~~~i~~~~ 323 (407)
|+.|++.-+........-..-....++++|+ +.|..++.|-..|++.-|-.. ......+.+. ...|.+|+
T Consensus 177 dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WS-prGKQl~iG~nnGt~vQy~P~-----leik~~ip~Pp~~e~yrvl~v~ 250 (1405)
T KOG3630|consen 177 DLSLRVKSTKQLAQNVTSFPVTNSQTAVLWS-PRGKQLFIGRNNGTEVQYEPS-----LEIKSEIPEPPVEENYRVLSVT 250 (1405)
T ss_pred ccchhhhhhhhhhhhhcccCcccceeeEEec-cccceeeEecCCCeEEEeecc-----cceeecccCCCcCCCcceeEEE
Confidence 8999888776443322222345678999998 788899999999999998763 3322222211 35789999
Q ss_pred ecCCCCEEEEE
Q 015438 324 SRGDGRYLISN 334 (407)
Q Consensus 324 ~s~~~~~l~s~ 334 (407)
|-....++++-
T Consensus 251 Wl~t~eflvvy 261 (1405)
T KOG3630|consen 251 WLSTQEFLVVY 261 (1405)
T ss_pred EecceeEEEEe
Confidence 98777776653
No 398
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.12 E-value=0.51 Score=38.92 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=80.1
Q ss_pred CeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC---C---eEEEE-
Q 015438 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---D---CIYVY- 254 (407)
Q Consensus 182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g---~i~i~- 254 (407)
..|+.+.....|.+|++..........+... +.|..+.++..|++|++--.+ . .+++|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---------------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~ 93 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---------------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYF 93 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---------------hheeEEEeccccceEEEEEeecCCccceEEEEEE
Confidence 4444445667899999985444333333222 278999999999999986332 2 45654
Q ss_pred --EcC--CCeeee-eeec---------------------cCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCc-
Q 015438 255 --DLE--ANKLSL-RILA---------------------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK- 307 (407)
Q Consensus 255 --d~~--~~~~~~-~~~~---------------------~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~- 307 (407)
+.. ..+++. .+.+ -..++.+++.+|-.|++++.+ ++.+.+|.+........
T Consensus 94 NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~ 171 (215)
T PF14761_consen 94 NWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEK 171 (215)
T ss_pred EhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEeccc
Confidence 222 111211 1111 234677899988899877544 56899998862211000
Q ss_pred -eeeeec----cccC--CeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 015438 308 -PAGVLM----GHLE--GITFIDSRGDGRYLISNGKDQAIKLWDI 345 (407)
Q Consensus 308 -~~~~~~----~~~~--~i~~~~~s~~~~~l~s~~~dg~i~iwd~ 345 (407)
.+..+. .|.. .+..+++ -+.|+|..+ +-.+++..+
T Consensus 172 ~~~lDFe~~l~~~~~~~~p~~v~i--c~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 172 FSFLDFERSLIDHIDNFKPTQVAI--CEGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred ccEEechhhhhheecCceEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence 111111 1111 2455555 456777666 455666654
No 399
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.10 E-value=1.5 Score=42.56 Aligned_cols=111 Identities=17% Similarity=0.257 Sum_probs=63.1
Q ss_pred CCeEEEEEcCCCeEEeEeeecccc----------------------------ceEEE-EEEECCCCCeEEEEeCC-----
Q 015438 145 ASQIRIYDVERGWKIQKDILAKSL----------------------------RWTVT-DTSLSPDQRHLVYASMS----- 190 (407)
Q Consensus 145 dg~i~iwd~~~~~~~~~~~~~~~~----------------------------~~~v~-~~~~sp~~~~l~~~~~d----- 190 (407)
+|.|..+|.++|+.+......... ...+. .+++.|...++..+..+
T Consensus 180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~ 259 (527)
T TIGR03075 180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN 259 (527)
T ss_pred CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence 688999999999777654333211 01111 23556666666665422
Q ss_pred C-----------eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCC---EEEEeeCCCeEEEEEc
Q 015438 191 P-----------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR---ELVAGSSDDCIYVYDL 256 (407)
Q Consensus 191 g-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~i~d~ 256 (407)
+ .|.-.|+++++..-.++... ++.-++.. .....-+....+|+ .++.+..+|.++++|.
T Consensus 260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~-~D~wD~d~------~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr 332 (527)
T TIGR03075 260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTP-HDEWDYDG------VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDR 332 (527)
T ss_pred CCCCCCCCccceeEEEEccccCCEEEeeeCCC-CCCccccC------CCCcEEEEeccCCcEEEEEEEeCCCceEEEEEC
Confidence 2 56667777777654433211 11101100 01112233334665 7888999999999999
Q ss_pred CCCeee
Q 015438 257 EANKLS 262 (407)
Q Consensus 257 ~~~~~~ 262 (407)
++++.+
T Consensus 333 ~tG~~i 338 (527)
T TIGR03075 333 TNGKLL 338 (527)
T ss_pred CCCcee
Confidence 999875
No 400
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.09 E-value=0.83 Score=39.57 Aligned_cols=148 Identities=13% Similarity=0.079 Sum_probs=88.8
Q ss_pred EEEEEEECCCCCeEEEEe---CCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC
Q 015438 171 TVTDTSLSPDQRHLVYAS---MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (407)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 247 (407)
.+.+.+++++++.++... ....++++.......... . ...+....|++++...++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~------------------g~~l~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-T------------------GGSLTRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-c------------------CCccccccccCCCCEEEEEcC
Confidence 588899999999887765 334566655433221111 0 015677889999887777666
Q ss_pred CCeEEEEE-cCCCeee-eeeec--cCCCeEEEEecCCCCCEEEEEe---CCCcEEEEeCcccCCCC------ceeeeecc
Q 015438 248 DDCIYVYD-LEANKLS-LRILA--HTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKG------KPAGVLMG 314 (407)
Q Consensus 248 dg~i~i~d-~~~~~~~-~~~~~--~~~~v~~i~~s~~~~~~l~s~~---~d~~i~vwd~~~~~~~~------~~~~~~~~ 314 (407)
+....++. ..+++.. ..+.. ..+.|..+.+| ++|..++... .++.|.+--+.... .+ .++.....
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vS-pDG~RvA~v~~~~~~~~v~va~V~r~~-~g~~~~l~~~~~~~~~ 163 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVS-PDGTRVAVVVEDGGGGRVYVAGVVRDG-DGVPRRLTGPRRVAPP 163 (253)
T ss_pred CCceEEEEecCCCcceeEEecccccCCceEEEEEC-CCCcEEEEEEecCCCCeEEEEEEEeCC-CCCcceeccceEeccc
Confidence 66666663 3333221 11211 12289999999 7777666554 35677776553111 22 22222323
Q ss_pred ccCCeEEEEecCCCCEEEEEeCCCc
Q 015438 315 HLEGITFIDSRGDGRYLISNGKDQA 339 (407)
Q Consensus 315 ~~~~i~~~~~s~~~~~l~s~~~dg~ 339 (407)
....++.++|.+++.+++.+...+.
T Consensus 164 ~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 164 LLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred ccCcceeeeecCCCEEEEEeCCCCC
Confidence 4567899999999988777665433
No 401
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.59 Score=45.49 Aligned_cols=187 Identities=12% Similarity=0.031 Sum_probs=95.5
Q ss_pred CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCC
Q 015438 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG 225 (407)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (407)
-.|+||+.. |..+.......+ .+..+.|+.+..+ +....+|+++||++-...........+ .
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~---~lI~mgWs~~eeL-I~v~k~g~v~Vy~~~ge~ie~~svg~e-------------~ 125 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHG---ELIGMGWSDDEEL-ICVQKDGTVHVYGLLGEFIESNSVGFE-------------S 125 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCC---CeeeecccCCceE-EEEeccceEEEeecchhhhcccccccc-------------c
Confidence 458888865 434443332222 5888999877654 455789999999986543322110000 1
Q ss_pred ccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeec---cCCCeEEEEecCCCCCEEEEEeCCC--cEEEEeCc
Q 015438 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVNTVCFGDESGHLIYSGSDDN--LCKVWDRR 300 (407)
Q Consensus 226 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~i~~s~~~~~~l~s~~~d~--~i~vwd~~ 300 (407)
....|..+.+..+|- ++-..+|.+.+-.-.......++.. ...+..|-...++..+....-.-+- ...++-..
T Consensus 126 ~~~~I~ec~~f~~GV--avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~ 203 (829)
T KOG2280|consen 126 QMSDIVECRFFHNGV--AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVE 203 (829)
T ss_pred ccCceeEEEEecCce--EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhccccee
Confidence 112455555655663 3333455555443222212222221 1112122222222221111111110 11122221
Q ss_pred ccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCccccc
Q 015438 301 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (407)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (407)
. .......+....+.+..+..||+.++|+--...|.|.+-++...+....+.
T Consensus 204 ~---~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 204 E---SRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred c---ccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1 111122222224567889999999999999999999999988877766654
No 402
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.03 E-value=0.85 Score=39.15 Aligned_cols=133 Identities=18% Similarity=0.169 Sum_probs=83.0
Q ss_pred EEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceecccccccccccee
Q 015438 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD 217 (407)
Q Consensus 138 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 217 (407)
.+.-.-.++...+||..+-+.+... ...+..+. ++ .+++.|+.+..+..|+++|..+-+......+....
T Consensus 102 l~qLTWk~~~~f~yd~~tl~~~~~~-~y~~EGWG---Lt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g---- 171 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNTLKKIGTF-PYPGEGWG---LT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG---- 171 (264)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEE-E-SSS--E---EE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT----
T ss_pred EEEEEecCCeEEEEccccceEEEEE-ecCCcceE---EE--cCCCEEEEECCccceEEECCcccceEEEEEEEECC----
Confidence 3444556889999999887665543 33343343 33 57888888877889999998877665544433211
Q ss_pred eeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeec---------------cCCCeEEEEecCCCC
Q 015438 218 FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---------------HTSDVNTVCFGDESG 282 (407)
Q Consensus 218 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------~~~~v~~i~~s~~~~ 282 (407)
..-..++.+.|- +|...|-.=....|...|..+|+.+..+.. ...-.+.|++.|..+
T Consensus 172 -------~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~ 243 (264)
T PF05096_consen 172 -------RPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD 243 (264)
T ss_dssp -------EE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT
T ss_pred -------EECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC
Confidence 112257778887 676666666677899999999998766531 124578999987777
Q ss_pred CEEEEE
Q 015438 283 HLIYSG 288 (407)
Q Consensus 283 ~~l~s~ 288 (407)
.+++||
T Consensus 244 ~l~vTG 249 (264)
T PF05096_consen 244 RLFVTG 249 (264)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 777776
No 403
>PHA02713 hypothetical protein; Provisional
Probab=96.02 E-value=0.13 Score=50.22 Aligned_cols=144 Identities=15% Similarity=0.093 Sum_probs=77.0
Q ss_pred CCCEEEEEeCCC-----eEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC------------------
Q 015438 135 DGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP------------------ 191 (407)
Q Consensus 135 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg------------------ 191 (407)
+|+..+.|+.++ .+..||..+.... ..............+. -+++..+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~-~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWK-MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEE-ECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence 566777777653 4888998875322 1111111111111222 2677777777542
Q ss_pred -----eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC------CeEEEEEcCC-C
Q 015438 192 -----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEA-N 259 (407)
Q Consensus 192 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~-~ 259 (407)
.+..||..+.+........... ... +++ .-++++.+.|+.+ ..|..||..+ .
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r--------------~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~ 491 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGT--------------IRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN 491 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCccc--------------ccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCC
Confidence 4667777766554333221110 011 122 2256666667654 2478899887 3
Q ss_pred e--eeeeeeccCCCeEEEEecCCCCCEEEEEeCCC--cEEEEeCc
Q 015438 260 K--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVWDRR 300 (407)
Q Consensus 260 ~--~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~--~i~vwd~~ 300 (407)
+ .+..+........ ++. -++.+.++|+.++ .+-.||..
T Consensus 492 ~W~~~~~m~~~r~~~~-~~~--~~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 492 GWELITTTESRLSALH-TIL--HDNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred CeeEccccCcccccce-eEE--ECCEEEEEeeecceeehhhcCcc
Confidence 3 3344433333333 333 3678999999888 67777776
No 404
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.79 E-value=1.4 Score=39.85 Aligned_cols=243 Identities=16% Similarity=0.107 Sum_probs=112.7
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeE---EeEe-eeccccceEEEEEEECCC----CCeEEEEeCC-------
Q 015438 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWK---IQKD-ILAKSLRWTVTDTSLSPD----QRHLVYASMS------- 190 (407)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~-~~~~~~~~~v~~~~~sp~----~~~l~~~~~d------- 190 (407)
..+.|+|.|+|++|++ ...|.|++++ ..+.. +... ............++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999987775 5699999999 44433 1111 112223445899999994 3333333321
Q ss_pred -CeEEEEECCCC--ceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC-------------CeEEEE
Q 015438 191 -PIVHIVDVGSG--TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-------------DCIYVY 254 (407)
Q Consensus 191 -g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------------g~i~i~ 254 (407)
..|.-|....+ .......+. .. ........| .-..|.|.|||.+.++.+.. |.|.-.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~---~~--~p~~~~~~H--~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri 153 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLV---TG--LPDTSSGNH--NGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRI 153 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEE---EE--EES-CSSSS---EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEE
T ss_pred ceeeEEEeccCCccccccceEEE---EE--eCCCCCCCC--CCccccCCCCCcEEEEeCCCCCcccccccccccceEEEe
Confidence 23444444333 111000000 00 000012234 34569999999755554332 234444
Q ss_pred EcCCCee-------------eeeee-ccCCCeEEEEecCCCCCEEEEEe-CCCcEEEEeCc----------cc--C----
Q 015438 255 DLEANKL-------------SLRIL-AHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRR----------CL--N---- 303 (407)
Q Consensus 255 d~~~~~~-------------~~~~~-~~~~~v~~i~~s~~~~~~l~s~~-~d~~i~vwd~~----------~~--~---- 303 (407)
+.. ++. ...+. ++. ....++|.|.++.++++=. .++.=.|.-+. .. .
T Consensus 154 ~~d-G~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~ 231 (331)
T PF07995_consen 154 DPD-GSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGP 231 (331)
T ss_dssp ETT-SSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS
T ss_pred ccc-CcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCC
Confidence 432 110 00111 222 2457899855577665432 22222222121 00 0
Q ss_pred ---------CCCceeeeeccccCCeEEEEecC-------CCCEEEEEeCCCcEEEEECCCCCCcccccCCCcccccccee
Q 015438 304 ---------VKGKPAGVLMGHLEGITFIDSRG-------DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 367 (407)
Q Consensus 304 ---------~~~~~~~~~~~~~~~i~~~~~s~-------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 367 (407)
....++..+..| ..++.+.|-. .|.+|++.-..+.|....++....+.....-.......+..
T Consensus 232 ~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~ 310 (331)
T PF07995_consen 232 PIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRD 310 (331)
T ss_dssp -ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEE
T ss_pred ccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceE
Confidence 001234444444 5567777753 45566666666788888886543322211112233336778
Q ss_pred eeCCCCCCccCCC
Q 015438 368 MDYPPQARDLKHP 380 (407)
Q Consensus 368 ~~~~~~~~~l~~~ 380 (407)
+.+.|||.++.+.
T Consensus 311 v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 311 VAQGPDGALYVSD 323 (331)
T ss_dssp EEEETTSEEEEEE
T ss_pred EEEcCCCeEEEEE
Confidence 8888888766543
No 405
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.76 E-value=0.5 Score=46.04 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=73.6
Q ss_pred EEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeee-ccCCCeEEEEecC-CCCCEEEEEeCCCcEEEEeCc-----ccC
Q 015438 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGD-ESGHLIYSGSDDNLCKVWDRR-----CLN 303 (407)
Q Consensus 231 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~s~-~~~~~l~s~~~d~~i~vwd~~-----~~~ 303 (407)
.-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|.++.|.. ++++.+++.|..+.|.+|--. ...
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 334445555555555556689999999876433221 4578899999852 577888888899999998642 111
Q ss_pred CCCceeeee--cccc-CCeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 015438 304 VKGKPAGVL--MGHL-EGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (407)
Q Consensus 304 ~~~~~~~~~--~~~~-~~i~~~~~s~~~~~l~s~~~dg~i~iwd~ 345 (407)
+...++..+ ..|. .+|....|.++|..++.+| +.+.|+|-
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 122333332 2343 5789999999997666554 66888874
No 406
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.74 E-value=0.99 Score=37.64 Aligned_cols=135 Identities=13% Similarity=0.069 Sum_probs=76.2
Q ss_pred cEEEEEEeCCCCEEEEeeC-C---------CeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEe
Q 015438 229 GIFSLKFSTDGRELVAGSS-D---------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298 (407)
Q Consensus 229 ~v~~~~~s~~~~~l~~~~~-d---------g~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd 298 (407)
+.+.-..+|+|+++ .|.. | |.++.|-.. ..+..+...-+--+.++|+.....+.++-+.+-.|.-||
T Consensus 110 R~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred ccccCccCCCCcee-eeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 45666778999884 3432 2 334444332 222222233344467889733344445666777887788
Q ss_pred CcccC---CCCceeeeeccc----cCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeC
Q 015438 299 RRCLN---VKGKPAGVLMGH----LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 370 (407)
Q Consensus 299 ~~~~~---~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 370 (407)
..... ...+.+..++.. ....-.++...+|++.++.-..++|...|..+++.+.++... .-.+++..|
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP----t~qitsccF 261 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP----TPQITSCCF 261 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC----CCceEEEEe
Confidence 54221 012223333220 111234555678888888888999999999999988876432 334444454
No 407
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.74 E-value=2.1 Score=41.48 Aligned_cols=195 Identities=17% Similarity=0.195 Sum_probs=108.1
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEeEeeecccc-ceEEEE-------EEECCCCCeEEEEeCCCeEEEEECCCCceeccc
Q 015438 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVTD-------TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (407)
Q Consensus 136 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~-------~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 207 (407)
+..+++++.++.|.-+|..+|+.+......... ...+.+ +++ .+..++.++.++.|.-+|..+++..-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 456666777888999999998776654322110 001101 122 2346777888999999999999875443
Q ss_pred cccccccceeeeecCCCCccccEEE-EEEeCCCCEEEEeeC------CCeEEEEEcCCCeeeeeeeccC-----------
Q 015438 208 NVTEIHDGLDFSAADDGGYSFGIFS-LKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHT----------- 269 (407)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~----------- 269 (407)
........ ..+.+ .... ++ .++++.. +|.|.-+|.++++.+-.+..-.
T Consensus 147 ~~~~~~~~------------~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~ 212 (527)
T TIGR03075 147 KNGDYKAG------------YTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADK 212 (527)
T ss_pred cccccccc------------ccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccc
Confidence 32111000 01111 1111 33 4555432 6889999999998765432111
Q ss_pred --------------------CCeE-EEEecCCCCCEEEEEeCC-----C-----------cEEEEeCcccCCCCceeeee
Q 015438 270 --------------------SDVN-TVCFGDESGHLIYSGSDD-----N-----------LCKVWDRRCLNVKGKPAGVL 312 (407)
Q Consensus 270 --------------------~~v~-~i~~s~~~~~~l~s~~~d-----~-----------~i~vwd~~~~~~~~~~~~~~ 312 (407)
+.+. .+++. +...+++.+... + .|.-.|++ +++..-.+
T Consensus 213 ~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D-~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~----TG~~~W~~ 287 (527)
T TIGR03075 213 PVGGEPGAKTWPGDAWKTGGGATWGTGSYD-PETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD----TGKIKWHY 287 (527)
T ss_pred ccccccccCCCCCCccccCCCCccCceeEc-CCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc----cCCEEEee
Confidence 0111 23443 444455555422 2 45555665 56655444
Q ss_pred cc--ccC-------CeEEEEecCCCC---EEEEEeCCCcEEEEECCCCCCc
Q 015438 313 MG--HLE-------GITFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSN 351 (407)
Q Consensus 313 ~~--~~~-------~i~~~~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~ 351 (407)
+. |.. ...-+....+|+ .++.++++|.+.+.|-++++.+
T Consensus 288 Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 288 QTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 42 211 112223334676 7889999999999999998875
No 408
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.69 E-value=1.9 Score=41.06 Aligned_cols=156 Identities=13% Similarity=0.142 Sum_probs=86.4
Q ss_pred CCceEEEEECCCCCEEE-EEe--CCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCC----CCeEEEEeCCCeEEEE
Q 015438 124 TSRAYVSQFSADGSLFV-AGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD----QRHLVYASMSPIVHIV 196 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~-~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~~~~~dg~i~vw 196 (407)
-.+|..++|. ||+.++ +.- .+|.+++=|.. .+..-+ .|..+.|.|- -..|++.-....|.||
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~-------viGqFE---hV~GlsW~P~~~~~~paLLAVQHkkhVtVW 87 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK-------VIGQFE---HVHGLSWAPPCTADTPALLAVQHKKHVTVW 87 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCcc-------Eeeccc---eeeeeeecCcccCCCCceEEEeccceEEEE
Confidence 3478899997 565544 331 23333322211 111112 3999999984 3345555667889999
Q ss_pred ECCCCcee--ccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCe--eeeeeeccCCCe
Q 015438 197 DVGSGTME--SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDV 272 (407)
Q Consensus 197 d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v 272 (407)
-+.-.... .........-+-.|.. --..+.|+|....|++-.....-.+++++... ....+ ...+-|
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~pv--------LpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~I 158 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFPV--------LPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLI 158 (671)
T ss_pred EeccCccccccceeeeeeeccCCccc--------CCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceE
Confidence 98632211 1111111100001111 12357899999888877666555566665432 22334 456789
Q ss_pred EEEEecCCCCCEEEEEe-CCCcEEEEeCc
Q 015438 273 NTVCFGDESGHLIYSGS-DDNLCKVWDRR 300 (407)
Q Consensus 273 ~~i~~s~~~~~~l~s~~-~d~~i~vwd~~ 300 (407)
.|.+|. .+|+.|+.+- ..=.-++||-.
T Consensus 159 hCACWT-~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 159 HCACWT-KDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEec-CcCCEEEEEeCCeEEEEEecCc
Confidence 999998 6777666553 33456788864
No 409
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.68 E-value=0.37 Score=43.70 Aligned_cols=175 Identities=15% Similarity=0.165 Sum_probs=82.9
Q ss_pred EcCCCeEEeEeeecccc--ceEEEEEEECCCCCeEEEEeC-C--CeEEEEECCCCceeccccccccccceeeeecCCCCc
Q 015438 152 DVERGWKIQKDILAKSL--RWTVTDTSLSPDQRHLVYASM-S--PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY 226 (407)
Q Consensus 152 d~~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~-d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (407)
|..+|.++..+.....+ .-..+.=+|.++|+.|+.++. + ..+++.|+.+++..++......
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~-------------- 81 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD-------------- 81 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B--------------
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC--------------
Confidence 55666555444333321 111223367889987777654 4 4788899999987766543211
Q ss_pred cccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEec-CCCCCEEEEEeC---C-----------
Q 015438 227 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG-DESGHLIYSGSD---D----------- 291 (407)
Q Consensus 227 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s-~~~~~~l~s~~~---d----------- 291 (407)
......++|+.+.++....+..|+-.|+++.+....+......+-...|. +.++..++..-. |
T Consensus 82 --~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~ 159 (386)
T PF14583_consen 82 --NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFR 159 (386)
T ss_dssp ---TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHH
T ss_pred --CccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHH
Confidence 11134567888887666566789999999988665565566666555553 345555433211 1
Q ss_pred --------CcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEe-C---CCc-EEEEECCC
Q 015438 292 --------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-K---DQA-IKLWDIRK 347 (407)
Q Consensus 292 --------~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~---dg~-i~iwd~~~ 347 (407)
+.|.-.|+. +++.. .+..-...+..+.|+|....+++=+ + +.. -|||=+++
T Consensus 160 e~~~a~p~~~i~~idl~----tG~~~-~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 160 EFYEARPHCRIFTIDLK----TGERK-VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp HHHHC---EEEEEEETT----T--EE-EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred HHHhhCCCceEEEEECC----CCcee-EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 123333443 33332 3323445677888999655444433 2 332 36676654
No 410
>PRK10115 protease 2; Provisional
Probab=95.63 E-value=2.9 Score=42.13 Aligned_cols=197 Identities=11% Similarity=0.053 Sum_probs=100.8
Q ss_pred CceEEEEECCCCCEEEEEeC-----CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCC------CeE
Q 015438 125 SRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIV 193 (407)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------g~i 193 (407)
-.+..+.|||+|++|+.+.. .-.|++.|+.++..+...+ ... -..++|++|++.|+.+..+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNV---EPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCc---ceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 45777899999999886533 2358899998874322211 111 1458999999877776542 367
Q ss_pred EEEECCCCce--eccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC---CCeEEEEEcC--CCeeeeeee
Q 015438 194 HIVDVGSGTM--ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLE--ANKLSLRIL 266 (407)
Q Consensus 194 ~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~ 266 (407)
+.+++.++.. ..+.. .. .....+ .+..+.++++++..+. ++.+.+++.. .++....+.
T Consensus 202 ~~h~lgt~~~~d~lv~~--e~------------~~~~~~-~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~ 266 (686)
T PRK10115 202 WRHTIGTPASQDELVYE--EK------------DDTFYV-SLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP 266 (686)
T ss_pred EEEECCCChhHCeEEEe--eC------------CCCEEE-EEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE
Confidence 7788877732 11221 00 000111 2333447776665443 3568888853 333322222
Q ss_pred ccCCCeEEEEecCCCCCEEEEEeCC-CcEEEEeCcccCCCCceeeeeccc-c-CCeEEEEecCCCCEEEEEeCCCcEEEE
Q 015438 267 AHTSDVNTVCFGDESGHLIYSGSDD-NLCKVWDRRCLNVKGKPAGVLMGH-L-EGITFIDSRGDGRYLISNGKDQAIKLW 343 (407)
Q Consensus 267 ~~~~~v~~i~~s~~~~~~l~s~~~d-~~i~vwd~~~~~~~~~~~~~~~~~-~-~~i~~~~~s~~~~~l~s~~~dg~i~iw 343 (407)
........+. + ..+.+++....+ ...+|..+... .......+..+ . ..|..+.+. .+..+++...+|.-+++
T Consensus 267 ~~~~~~~~~~-~-~~~~ly~~tn~~~~~~~l~~~~~~--~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~ 341 (686)
T PRK10115 267 RRKDHEYSLD-H-YQHRFYLRSNRHGKNFGLYRTRVR--DEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLR 341 (686)
T ss_pred CCCCCEEEEE-e-CCCEEEEEEcCCCCCceEEEecCC--CcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 2222223332 2 233333333222 23344433211 11122333334 2 357778876 33555666667776665
Q ss_pred ECC
Q 015438 344 DIR 346 (407)
Q Consensus 344 d~~ 346 (407)
-+.
T Consensus 342 ~~~ 344 (686)
T PRK10115 342 QIN 344 (686)
T ss_pred EEc
Confidence 544
No 411
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.54 E-value=0.46 Score=46.24 Aligned_cols=124 Identities=17% Similarity=0.129 Sum_probs=72.0
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEEC--CCCCeEEEEeCCCeEEEEECCCCce
Q 015438 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--PDQRHLVYASMSPIVHIVDVGSGTM 203 (407)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~dg~i~vwd~~~~~~ 203 (407)
.+.-+.-|.-++..++-+....+.|||...+...... .. .....|.++.|. |+++.+++.+....|.+|.-.....
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~-~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE-SF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee-ee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3444555555555555555567999999887533222 22 335579999985 6899999999999999986432111
Q ss_pred eccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcC
Q 015438 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (407)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 257 (407)
....+.......+.... ... .+|.+..|.++|.+++ |+ ++.+.|+|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~--~T~--h~Igds~Wl~~G~LvV-~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISS--HTP--HPIGDSIWLKDGTLVV-GS-GNQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeec--CCC--CCccceeEecCCeEEE-Ee-CCEEEEECCC
Confidence 11111111111111111 111 3788999999996444 43 3468888753
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.52 E-value=2.2 Score=42.84 Aligned_cols=78 Identities=14% Similarity=0.203 Sum_probs=54.3
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCeEEEEEcCC----------Ce-EEeEe-------eeccccceEEEEEEECCC---C
Q 015438 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVER----------GW-KIQKD-------ILAKSLRWTVTDTSLSPD---Q 181 (407)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----------~~-~~~~~-------~~~~~~~~~v~~~~~sp~---~ 181 (407)
-.-.|..|.++|+|+++|..|..| |.|-.+.. |. .+.+. .........|..+.|+|. +
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 345899999999999999888766 44443321 11 11111 112234557999999996 5
Q ss_pred CeEEEEeCCCeEEEEECCCC
Q 015438 182 RHLVYASMSPIVHIVDVGSG 201 (407)
Q Consensus 182 ~~l~~~~~dg~i~vwd~~~~ 201 (407)
..|++-+.|+.+++||+...
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CeEEEEecCCEEEEEecCCC
Confidence 88999999999999999753
No 413
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.40 E-value=3.5 Score=41.74 Aligned_cols=188 Identities=13% Similarity=0.128 Sum_probs=113.8
Q ss_pred EEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC--------------eEEEEECCCCcee
Q 015438 139 FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--------------IVHIVDVGSGTME 204 (407)
Q Consensus 139 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg--------------~i~vwd~~~~~~~ 204 (407)
++.+ ..+.+++.-++.-.++...... .......+++.+....+++.+... .++++|-++-+..
T Consensus 687 l~~~-~~~~l~i~tid~iqkl~irtvp--l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 687 LASA-NGGALTIGTIDEIQKLHIRTVP--LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred EEEe-cCCceEEEEecchhhcceeeec--CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 4444 3355676666543222222211 122366677776444444443211 3555555554443
Q ss_pred ccccccccccceeeeecCCCCccccEEEEEEeCC-CCEEEEee----------CCCeEEEEEcCCCeeeeeee--ccCCC
Q 015438 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGS----------SDDCIYVYDLEANKLSLRIL--AHTSD 271 (407)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~--~~~~~ 271 (407)
........ .....|.++.|..| +.++++|+ ..|.|.+|.....+.+.... .-.+.
T Consensus 764 ~~hef~~~------------E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 764 SSHEFERN------------ETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred eecccccc------------ceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 33222211 12225666778877 67888875 24788888887744333332 22456
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 015438 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (407)
Q Consensus 272 v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 349 (407)
+.++.. -+|+++|. -...|++|+.. ..+.++.-..+..++..+...-.|..++.|.--+++.+-..+..+
T Consensus 832 v~aL~~--fngkllA~--In~~vrLye~t----~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 832 VYALVE--FNGKLLAG--INQSVRLYEWT----TERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred eeehhh--hCCeEEEe--cCcEEEEEEcc----ccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 666655 46766643 45689999997 666777777888899999999999999999988888887777655
No 414
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.38 E-value=2.3 Score=39.54 Aligned_cols=152 Identities=11% Similarity=0.117 Sum_probs=86.2
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCe-EEeEeeeccccceEEEEEEECC-----CCCeEEEEeCCCeEEEEECCCCcee----
Q 015438 135 DGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSP-----DQRHLVYASMSPIVHIVDVGSGTME---- 204 (407)
Q Consensus 135 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~~dg~i~vwd~~~~~~~---- 204 (407)
+...|++|+..|.++||+...+. .............+|..+..-. +...||+ =.-..+.||.+......
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 34689999999999999986542 2222333334455787776532 2334444 34567888887321110
Q ss_pred ccccccccccceeeeecCCCCccccEEEEEEeC----C-CCEEEEeeCCCeEEEEEcCCCeeeeeeec--cCCCeEEEEe
Q 015438 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFST----D-GRELVAGSSDDCIYVYDLEANKLSLRILA--HTSDVNTVCF 277 (407)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~i~~ 277 (407)
....+... ..+. -......+++-| . ..+|.+-+-||.+.+|+-+.......+.. .+++ +++
T Consensus 115 ~~~~L~~~------yeh~---l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgP---l~Y 182 (418)
T PF14727_consen 115 NQYQLELI------YEHS---LQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGP---LCY 182 (418)
T ss_pred cEEEEEEE------EEEe---cccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcC---eEE
Confidence 00000000 0000 011233444444 2 35788899999999999775543333322 3344 677
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCc
Q 015438 278 GDESGHLIYSGSDDNLCKVWDRR 300 (407)
Q Consensus 278 s~~~~~~l~s~~~d~~i~vwd~~ 300 (407)
+ +..+.|++++.+..+.-|...
T Consensus 183 ~-~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 183 C-PRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred e-ecCCEEEEecCceeEEEecHH
Confidence 6 556678888888888888764
No 415
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.33 E-value=0.33 Score=45.92 Aligned_cols=121 Identities=11% Similarity=0.101 Sum_probs=73.0
Q ss_pred cCCCceEEEEECCCC----CEEEEEeCCCeEEEEEcCC-----CeEEeEeeeccccceE--EEEEEECCCCCeEEEEeCC
Q 015438 122 QTTSRAYVSQFSADG----SLFVAGFQASQIRIYDVER-----GWKIQKDILAKSLRWT--VTDTSLSPDQRHLVYASMS 190 (407)
Q Consensus 122 ~h~~~v~~~~~s~~~----~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~~~~~d 190 (407)
+.-..|..+.|.|-+ ..|.+......|.||.+.- ++.+..........-+ -..+.|+|....|++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 445779999999963 3455666788999999752 1111111111100111 2357899999988887665
Q ss_pred CeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC-CCeEEEEEcC
Q 015438 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE 257 (407)
Q Consensus 191 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~ 257 (407)
..-.++++..........+ ...+-|.|.+|.+||+.|+++-. .=.-++||-.
T Consensus 134 dvSV~~sV~~d~srVkaDi---------------~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADI---------------KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ceeEeeeeeeCCceEEEec---------------cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 5545666654332211111 12347999999999998776543 3346888854
No 416
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.32 E-value=0.065 Score=31.45 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=27.1
Q ss_pred CCeEEEEecCCCC--CEEEEEeCCCcEEEEeCc
Q 015438 270 SDVNTVCFGDESG--HLIYSGSDDNLCKVWDRR 300 (407)
Q Consensus 270 ~~v~~i~~s~~~~--~~l~s~~~d~~i~vwd~~ 300 (407)
+.|.++.|+|..+ .+|+.+-.-+.|.|+|+|
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 4688999997666 799998888999999998
No 417
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.23 E-value=0.63 Score=43.26 Aligned_cols=144 Identities=15% Similarity=0.200 Sum_probs=85.7
Q ss_pred CCCeEEE-EeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCC-------EEEEeeCCCeE
Q 015438 180 DQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-------ELVAGSSDDCI 251 (407)
Q Consensus 180 ~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i 251 (407)
+..+|.. |+....++-.|++.|+.+....+.. .| -+.|.|+.+ .-++|-.+..|
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~d-----------------dv-vVqy~p~~kf~qmt~eqtlvGlS~~sv 539 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD-----------------DV-VVQYNPYFKFQQMTDEQTLVGLSDYSV 539 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCC-----------------cc-eeecCCchhHHhcCccceEEeecccce
Confidence 4444443 4555677777888776654332211 22 456666321 23445556667
Q ss_pred EEEEcCCCe-eeeeeeccCCCeEEEEecC---CCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCC
Q 015438 252 YVYDLEANK-LSLRILAHTSDVNTVCFGD---ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (407)
Q Consensus 252 ~i~d~~~~~-~~~~~~~~~~~v~~i~~s~---~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 327 (407)
.-.|.+-.. .+.. ......++.-.|+. ....+++.++..|-|++||.- .......+.+....|..+..+.+
T Consensus 540 FrIDPR~~gNKi~v-~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi----g~rAKtalP~lG~aIk~idvta~ 614 (776)
T COG5167 540 FRIDPRARGNKIKV-VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI----GKRAKTALPGLGDAIKHIDVTAN 614 (776)
T ss_pred EEecccccCCceee-eeehhccccccccccccccCceEEEecCCCceeeehhh----cchhhhcCcccccceeeeEeecC
Confidence 777776432 2111 11222222222221 234589999999999999974 33333456667788999999999
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 015438 328 GRYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~ 347 (407)
|.++++.+ ...+.+-|++-
T Consensus 615 Gk~ilaTC-k~yllL~d~~i 633 (776)
T COG5167 615 GKHILATC-KNYLLLTDVPI 633 (776)
T ss_pred CcEEEEee-cceEEEEeccc
Confidence 99888776 46788888763
No 418
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.21 E-value=2.6 Score=39.14 Aligned_cols=38 Identities=13% Similarity=-0.045 Sum_probs=32.2
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccc
Q 015438 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 317 ~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (407)
-.+.+++.+|++++.++...=|.|.++|+.++..+...
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW 345 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW 345 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh
Confidence 34788999999999998888899999999998766554
No 419
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=0.16 Score=51.44 Aligned_cols=114 Identities=12% Similarity=0.018 Sum_probs=75.8
Q ss_pred cEEEEEEeCCCCEEEEe--eCCCeEEEEEcCCCeeee-----eee------ccCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 015438 229 GIFSLKFSTDGRELVAG--SSDDCIYVYDLEANKLSL-----RIL------AHTSDVNTVCFGDESGHLIYSGSDDNLCK 295 (407)
Q Consensus 229 ~v~~~~~s~~~~~l~~~--~~dg~i~i~d~~~~~~~~-----~~~------~~~~~v~~i~~s~~~~~~l~s~~~d~~i~ 295 (407)
.+..+...+|+...++. +++-.|+.||+++...-. -|. ....-..++.|+|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 56667777787654443 344479999997643211 111 12234567888866566677788899999
Q ss_pred EEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 015438 296 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (407)
Q Consensus 296 vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~ 346 (407)
+.-+.. ....+..+ ......++++|+|.|+.++.|-..|++.-|-..
T Consensus 182 V~~~~~---~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 182 VKSTKQ---LAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhh---hhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 988751 12222222 234568999999999999999999999988744
No 420
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.17 E-value=0.13 Score=30.20 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=26.8
Q ss_pred CceEEEEECCC-C--CEEEEEeCCCeEEEEEcCCC
Q 015438 125 SRAYVSQFSAD-G--SLFVAGFQASQIRIYDVERG 156 (407)
Q Consensus 125 ~~v~~~~~s~~-~--~~l~~~~~dg~i~iwd~~~~ 156 (407)
+.|.+++|||+ + ++|+.+-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 47899999985 4 58888888899999999854
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.16 E-value=1 Score=41.46 Aligned_cols=143 Identities=12% Similarity=0.135 Sum_probs=74.6
Q ss_pred EEEEEEECCCCCeEEEEe-----------CCC-eEEEEECCCC--ceeccccccccccceeeeecCCCCccccEEEEEEe
Q 015438 171 TVTDTSLSPDQRHLVYAS-----------MSP-IVHIVDVGSG--TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (407)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~-----------~dg-~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 236 (407)
....|+|.++|+++++-. ..+ .|.+++-..+ .......+.. .-.....+++.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~--------------~l~~p~Gi~~~ 80 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE--------------ELSMVTGLAVA 80 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec--------------CCCCccceeEe
Confidence 366789999999877753 223 6777764432 2211111111 01135678898
Q ss_pred CCCCEEEEeeCCCeEEEE-EcCCC-----e--ee-eeeec----cCCCeEEEEecCCCCCEEEEEeCC------------
Q 015438 237 TDGRELVAGSSDDCIYVY-DLEAN-----K--LS-LRILA----HTSDVNTVCFGDESGHLIYSGSDD------------ 291 (407)
Q Consensus 237 ~~~~~l~~~~~dg~i~i~-d~~~~-----~--~~-~~~~~----~~~~v~~i~~s~~~~~~l~s~~~d------------ 291 (407)
++| |+++... .|..| |.... + .+ ..+.. +......++|. ++|.+.++-+..
T Consensus 81 ~~G--lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~g-pDG~LYv~~G~~~~~~~~~~~~~~ 156 (367)
T TIGR02604 81 VGG--VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWG-PDGWLYFNHGNTLASKVTRPGTSD 156 (367)
T ss_pred cCC--EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceEC-CCCCEEEecccCCCceeccCCCcc
Confidence 888 4444444 45544 54321 1 11 12222 13446789997 778776655421
Q ss_pred -------CcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeC
Q 015438 292 -------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK 336 (407)
Q Consensus 292 -------~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 336 (407)
+.|.-+|.. +..+..+..-......++|+|+|+++++-..
T Consensus 157 ~~~~~~~g~i~r~~pd-----g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 157 ESRQGLGGGLFRYNPD-----GGKLRVVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred CcccccCceEEEEecC-----CCeEEEEecCcCCCccceECCCCCEEEEccC
Confidence 234444442 2223333222233568999999998776543
No 422
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.97 E-value=2.3 Score=37.18 Aligned_cols=213 Identities=16% Similarity=0.115 Sum_probs=116.9
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcC------CCeEEeEeeec-cc--cceEEEEEEECCCCC------------eE
Q 015438 126 RAYVSQFSADGSLFVAGFQASQIRIYDVE------RGWKIQKDILA-KS--LRWTVTDTSLSPDQR------------HL 184 (407)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~------~~~~~~~~~~~-~~--~~~~v~~~~~sp~~~------------~l 184 (407)
--+.|+|+|.+.+-++....+...+||.. ....+...+.. .. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45889999999888888888999999986 12222211111 11 123467777764332 25
Q ss_pred EEEeCCCeEEEEECCCCce---eccccccccccceeeeecCCCCccccEEEEEEeC--CCCEEEEe-eCCCeEEEEEcCC
Q 015438 185 VYASMSPIVHIVDVGSGTM---ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAG-SSDDCIYVYDLEA 258 (407)
Q Consensus 185 ~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~-~~dg~i~i~d~~~ 258 (407)
+.+++||+|.-|.-.-+.. .......... ...-...+++.. .+.+|+.+ -.+++|.+||-.-
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~------------~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ------------QGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCC------------CcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 6778899999998543322 1111110000 011123344443 34555544 4578899998653
Q ss_pred Ceeee--eee-----ccCCC--eE------EEEec--CCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeec--cccCCe
Q 015438 259 NKLSL--RIL-----AHTSD--VN------TVCFG--DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGI 319 (407)
Q Consensus 259 ~~~~~--~~~-----~~~~~--v~------~i~~s--~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~i 319 (407)
.+... .+. ..-.+ |. -|.|. +++.+.=+.|..-|.|-+||+ .+..++.+. +.-...
T Consensus 172 ~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-----~G~l~~r~as~g~LNaP 246 (336)
T TIGR03118 172 RPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-----NGQLLRRVASSGRLNAP 246 (336)
T ss_pred ccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-----CCcEEEEeccCCcccCC
Confidence 32210 010 00011 00 01111 122222233444578999998 578777663 233345
Q ss_pred EEEEecC------CCCEEEEEeCCCcEEEEECCCCCCccccc
Q 015438 320 TFIDSRG------DGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (407)
Q Consensus 320 ~~~~~s~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (407)
+.|+..| .|.+|+---.||+|..||..+++.+..+.
T Consensus 247 WG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 247 WGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred ceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 6676654 56677766679999999999887665543
No 423
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.94 E-value=0.037 Score=54.41 Aligned_cols=190 Identities=14% Similarity=0.136 Sum_probs=106.0
Q ss_pred CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECC-CCCeEEEEeCCCeEEEEECCC--Cceeccccccccccceeeeec
Q 015438 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGS--GTMESLANVTEIHDGLDFSAA 221 (407)
Q Consensus 145 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~ 221 (407)
.+.|++-+...... .....++..+.|-.+.|-. +-..++ -.-|.+.||++.- |+....+.+...
T Consensus 110 ~~~vrvaN~~~sm~--~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~--------- 176 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMR--HNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPI--------- 176 (1283)
T ss_pred hhhhhhccCcchhH--HHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeec---------
Confidence 35566666554311 1123444555677787743 211222 2336788998863 333221111100
Q ss_pred CCCCccccEEEEEEeC---CCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEe-----------cCCCCCEEEE
Q 015438 222 DDGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----------GDESGHLIYS 287 (407)
Q Consensus 222 ~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~-----------s~~~~~~l~s 287 (407)
......+.-+.|.| +.-++..+-.++.|++........ ..+.+|...+..++| | +||..|++
T Consensus 177 --~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lS-pDGtv~a~ 252 (1283)
T KOG1916|consen 177 --TPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLS-PDGTVFAW 252 (1283)
T ss_pred --CcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeC-CCCcEEEE
Confidence 01111234444544 566888888889998887765433 334457666655443 5 88999999
Q ss_pred EeCCCcEEEEeCccc-CCCCceeeeeccccCC-eEEEEecCC-------C--CEEEEEeC-CCcEEEEECCCCCCc
Q 015438 288 GSDDNLCKVWDRRCL-NVKGKPAGVLMGHLEG-ITFIDSRGD-------G--RYLISNGK-DQAIKLWDIRKMSSN 351 (407)
Q Consensus 288 ~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~-i~~~~~s~~-------~--~~l~s~~~-dg~i~iwd~~~~~~~ 351 (407)
.+.||.+++|-+.-. .....++..++.|... -.|.-|+.+ + .++++++. +..+++|.-...+++
T Consensus 253 a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 253 AISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 999999988876411 1133455666667632 222223322 1 24556654 456999998887776
No 424
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.90 E-value=2.6 Score=42.37 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=54.9
Q ss_pred cceEEEEEEECCCCCeEEEEeCCCeEEEEECCCC-ceeccc-cccccccceeeeec---CCCCccccEEEEEEeCC---C
Q 015438 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLA-NVTEIHDGLDFSAA---DDGGYSFGIFSLKFSTD---G 239 (407)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~-~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~---~ 239 (407)
..-.|..+.++|+|++|+..|..| |.|..+... .....+ ..........+... -.......|..+.|+|. +
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 344789999999999999988866 445444321 100000 00000000000000 01234568999999996 4
Q ss_pred CEEEEeeCCCeEEEEEcCCC
Q 015438 240 RELVAGSSDDCIYVYDLEAN 259 (407)
Q Consensus 240 ~~l~~~~~dg~i~i~d~~~~ 259 (407)
..|++-+.|+++++||+...
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CeEEEEecCCEEEEEecCCC
Confidence 78999999999999999754
No 425
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.87 E-value=2 Score=39.62 Aligned_cols=155 Identities=15% Similarity=0.186 Sum_probs=78.6
Q ss_pred CceEEEEECCCCCEEEEEe-----------CCC-eEEEEEcCCC--eEEeEeeeccccceEEEEEEECCCCCeEEEEeCC
Q 015438 125 SRAYVSQFSADGSLFVAGF-----------QAS-QIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190 (407)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~-----------~dg-~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 190 (407)
.....|+|.++|+++++-. ..+ .|.+++-.++ ........... ......+++.+++ ++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~-l~~p~Gi~~~~~G-ly-V~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE-LSMVTGLAVAVGG-VY-VATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC-CCCccceeEecCC-EE-EeCCC
Confidence 3456889999999887653 223 6777765432 21111111222 2236788998888 44 44444
Q ss_pred CeEEEEECCCCc-ee-ccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeC-------------------CC
Q 015438 191 PIVHIVDVGSGT-ME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------------DD 249 (407)
Q Consensus 191 g~i~vwd~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------------------dg 249 (407)
...++.|..... .. ....+. .++.. ....+......+.|.|||.+.++-+. .|
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~---~~~~~---~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g 164 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLL---SGFGG---QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGG 164 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEE---EccCC---CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCc
Confidence 333333443221 10 000000 00000 00012235778999999985554331 14
Q ss_pred eEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeC
Q 015438 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD 290 (407)
Q Consensus 250 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~ 290 (407)
.|..+|..+++. ..+...-.....++|+ ++++++++-..
T Consensus 165 ~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d-~~G~l~~tdn~ 203 (367)
T TIGR02604 165 GLFRYNPDGGKL-RVVAHGFQNPYGHSVD-SWGDVFFCDND 203 (367)
T ss_pred eEEEEecCCCeE-EEEecCcCCCccceEC-CCCCEEEEccC
Confidence 566677665543 2222223345689997 68888766443
No 426
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.82 E-value=1.5 Score=40.90 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=46.2
Q ss_pred CCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCc
Q 015438 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (407)
Q Consensus 239 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~ 300 (407)
..++++|+..|.|++||--.-.....+.+....|..|..+ .+|.++++.+ ..++.+.|++
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvt-a~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVT-ANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEee-cCCcEEEEee-cceEEEEecc
Confidence 3489999999999999975444445566777889999997 7888776655 4578888875
No 427
>PRK10115 protease 2; Provisional
Probab=94.76 E-value=5.2 Score=40.30 Aligned_cols=113 Identities=10% Similarity=0.050 Sum_probs=68.8
Q ss_pred eEEEEEEECCCCCeEEEEeCC-----CeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEE
Q 015438 170 WTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (407)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 244 (407)
..+..+.|+||+++|+.+... ..|++.|+.++...... +. . .-..++|.+|++.|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~---------------~--~~~~~~w~~D~~~~~y 188 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LD---------------N--VEPSFVWANDSWTFYY 188 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-cc---------------C--cceEEEEeeCCCEEEE
Confidence 457788999999999886432 36889999877521110 00 0 1145899999987766
Q ss_pred eeCC------CeEEEEEcCCC--eeeeeeeccCCCeEEEEecCCCCCEEEEEeC---CCcEEEEeCc
Q 015438 245 GSSD------DCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRR 300 (407)
Q Consensus 245 ~~~d------g~i~i~d~~~~--~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~---d~~i~vwd~~ 300 (407)
...+ ..|+.+++.++ +....+........-..+.+.++++++..+. ++.+.+++..
T Consensus 189 ~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 189 VRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 5432 36888999887 3333343333333322333356776554443 4578898864
No 428
>PHA03098 kelch-like protein; Provisional
Probab=94.61 E-value=1.6 Score=42.57 Aligned_cols=147 Identities=10% Similarity=0.014 Sum_probs=72.0
Q ss_pred CCCCeEEEEeCCC------eEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC----
Q 015438 179 PDQRHLVYASMSP------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---- 248 (407)
Q Consensus 179 p~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---- 248 (407)
.++..++.|+.++ .+..||..+.+.......... ......+. -++++++.|+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--------------R~~~~~~~--~~~~lyv~GG~~~~~~ 356 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP--------------RKNPGVTV--FNNRIYVIGGIYNSIS 356 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc--------------cccceEEE--ECCEEEEEeCCCCCEe
Confidence 3566677776542 577788877665433221110 00111222 256777777765
Q ss_pred -CeEEEEEcCCCeeee--eeeccCCCeEEEEecCCCCCEEEEEeCC------CcEEEEeCcccCCCCceeeeeccccCCe
Q 015438 249 -DCIYVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSDD------NLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (407)
Q Consensus 249 -g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~s~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~i 319 (407)
..+..||..+.+-.. .+...... .+++. .++++++.||.+ +.+..||..... ...+..+.......
T Consensus 357 ~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~ 431 (534)
T PHA03098 357 LNTVESWKPGESKWREEPPLIFPRYN-PCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLPISHYGG 431 (534)
T ss_pred cceEEEEcCCCCceeeCCCcCcCCcc-ceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCCccccCc
Confidence 357888887664321 12111111 22232 356777777732 357888886221 11111111111111
Q ss_pred EEEEecCCCCEEEEEeCCC--------cEEEEECCCC
Q 015438 320 TFIDSRGDGRYLISNGKDQ--------AIKLWDIRKM 348 (407)
Q Consensus 320 ~~~~~s~~~~~l~s~~~dg--------~i~iwd~~~~ 348 (407)
..+ ..++..++.||.++ .+.+||..+.
T Consensus 432 ~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 432 CAI--YHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred eEE--EECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 222 22566667776432 3788887764
No 429
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.60 E-value=3.3 Score=41.06 Aligned_cols=157 Identities=13% Similarity=0.159 Sum_probs=90.3
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEe------Eeeecc-------------ccceEEEEEEECC--CCCeEEEEeCCCeEE
Q 015438 136 GSLFVAGFQASQIRIYDVERGWKIQ------KDILAK-------------SLRWTVTDTSLSP--DQRHLVYASMSPIVH 194 (407)
Q Consensus 136 ~~~l~~~~~dg~i~iwd~~~~~~~~------~~~~~~-------------~~~~~v~~~~~sp--~~~~l~~~~~dg~i~ 194 (407)
+.+++++. .+.|.||+++.-.... ...... .....|+-|.... +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777764 6889999986432111 000000 0112344444332 456888999999999
Q ss_pred EEECCCCce--ecc-------ccccccccceeeeecCCCCccccEEEEEEe--CCCCEEEEeeCCCeEEEEEcCCC--ee
Q 015438 195 IVDVGSGTM--ESL-------ANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDDCIYVYDLEAN--KL 261 (407)
Q Consensus 195 vwd~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~i~d~~~~--~~ 261 (407)
+|.+++-.. ... .........+.+. -...++.++++ ...++||++++...|.||-.... +.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~------v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~ 201 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR------VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERF 201 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee------cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccc
Confidence 997742100 000 0000000001111 22368889998 77889999988888888765432 11
Q ss_pred -eeeeeccCCCeEEEEecCCC----CC-EEEEEeCCCcEEEEeC
Q 015438 262 -SLRILAHTSDVNTVCFGDES----GH-LIYSGSDDNLCKVWDR 299 (407)
Q Consensus 262 -~~~~~~~~~~v~~i~~s~~~----~~-~l~s~~~d~~i~vwd~ 299 (407)
...-..+...|-+|+|-+.+ |. .+++++-.|.+.+|++
T Consensus 202 ~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 202 YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11111355678899997443 22 7788889999999888
No 430
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.44 E-value=1 Score=41.37 Aligned_cols=104 Identities=12% Similarity=0.132 Sum_probs=71.4
Q ss_pred ccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeee----eeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcc
Q 015438 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS----LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 301 (407)
Q Consensus 226 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~ 301 (407)
..++|.++.|++|.+.||+--.+.+|.+++....+.. .+.+.....|...+|+ .+ .-++.-+..| +-+|-..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~-~s-~e~A~i~~~G-~e~y~v~- 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT-SS-TEIAFITDQG-IEFYQVL- 140 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe-cC-eeEEEEecCC-eEEEEEc-
Confidence 3448999999999999999999999999998433322 1222344558889997 33 4455554443 5666554
Q ss_pred cCCCCceeeeeccccCCeEEEEecCCCCEEEEEe
Q 015438 302 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (407)
Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 335 (407)
.....++..+.|...|.--.|.++.+.++-++
T Consensus 141 --pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 141 --PEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred --hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 14455666677888888888998887655443
No 431
>PLN02193 nitrile-specifier protein
Probab=94.40 E-value=4.9 Score=38.46 Aligned_cols=105 Identities=11% Similarity=0.029 Sum_probs=54.0
Q ss_pred CCCeEEEEeCC-----CeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCC-----
Q 015438 180 DQRHLVYASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----- 249 (407)
Q Consensus 180 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----- 249 (407)
++++.+.|+.+ ..+.+||+.+.+...+....... .+...| ++.. -++++.+.|+.++
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P-------~~R~~h-----~~~~-~~~~iYv~GG~~~~~~~~ 294 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGP-------TPRSFH-----SMAA-DEENVYVFGGVSATARLK 294 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCC-------CCccce-----EEEE-ECCEEEEECCCCCCCCcc
Confidence 56667777654 35888888877654433221000 001111 1222 2456667776543
Q ss_pred eEEEEEcCCCeeeeeee-----ccCCCeEEEEecCCCCCEEEEEeCC----CcEEEEeCc
Q 015438 250 CIYVYDLEANKLSLRIL-----AHTSDVNTVCFGDESGHLIYSGSDD----NLCKVWDRR 300 (407)
Q Consensus 250 ~i~i~d~~~~~~~~~~~-----~~~~~v~~i~~s~~~~~~l~s~~~d----~~i~vwd~~ 300 (407)
.+..||+.+.+-...-. ..... ..++. .++++++.++.+ ..+.+||+.
T Consensus 295 ~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~ 351 (470)
T PLN02193 295 TLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV--VQGKVWVVYGFNGCEVDDVHYYDPV 351 (470)
T ss_pred eEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE--ECCcEEEEECCCCCccCceEEEECC
Confidence 47788887765321100 01111 12222 246677777755 468889986
No 432
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.22 E-value=1.4 Score=40.41 Aligned_cols=146 Identities=12% Similarity=0.049 Sum_probs=84.7
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceecccc
Q 015438 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (407)
Q Consensus 129 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 208 (407)
.+-|....+.|++. ..|.+.=|-+.....-..+.......++|.++.||+|.+.||+--.+..|.+++....+......
T Consensus 27 gvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 44455444444443 34455556544321111222233445689999999999999999999999999985443322221
Q ss_pred ccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCe-eeeeeeccCCCeEEEEecCCCCCEEEE
Q 015438 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHLIYS 287 (407)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~i~~s~~~~~~l~s 287 (407)
.... ..+..|....|+.+ .-+|..+..| +-+|-+...+ .++..+.|...|.--.|++...-.|++
T Consensus 106 ~~ck------------~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 106 QECK------------TKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred HHhc------------cCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 1110 12235888999876 4566666555 6666554332 334445677788888887444434444
Q ss_pred Ee
Q 015438 288 GS 289 (407)
Q Consensus 288 ~~ 289 (407)
.+
T Consensus 172 t~ 173 (657)
T KOG2377|consen 172 TT 173 (657)
T ss_pred cc
Confidence 44
No 433
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.88 E-value=7 Score=38.89 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=71.7
Q ss_pred cEEEEEEeC--CCCEEEEeeCCCeEEEEEcCC-------C-------------eeeeeeeccCCCeEEEEecC-CCCCEE
Q 015438 229 GIFSLKFST--DGRELVAGSSDDCIYVYDLEA-------N-------------KLSLRILAHTSDVNTVCFGD-ESGHLI 285 (407)
Q Consensus 229 ~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~-------~-------------~~~~~~~~~~~~v~~i~~s~-~~~~~l 285 (407)
.|+-|.... ....|+.+..||.|.+|.+++ . ++...+. -...++.++++. ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 466665554 445889999999999997631 0 0112222 244678888852 335677
Q ss_pred EEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCC-----CC-EEEEEeCCCcEEEEEC
Q 015438 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-----GR-YLISNGKDQAIKLWDI 345 (407)
Q Consensus 286 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~-~l~s~~~dg~i~iwd~ 345 (407)
|+++....|.||-....+ .......-..|...|.+|+|-++ |. +|++++=.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~-~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVD-ERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccc-cccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 777777888887664211 11111111125567888888653 32 7888888999999888
No 434
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.88 E-value=8.5 Score=39.21 Aligned_cols=158 Identities=13% Similarity=0.068 Sum_probs=88.3
Q ss_pred cEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeee-eccCCCeEEEEecCC--CCC---EEEEEeCCCcEEEEeCccc
Q 015438 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDE--SGH---LIYSGSDDNLCKVWDRRCL 302 (407)
Q Consensus 229 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~s~~--~~~---~l~s~~~d~~i~vwd~~~~ 302 (407)
.++....+.+...++.++.++.+...++..+.....- ......|.|+.++|. +.+ +++.|.++..+.+--.-.
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p- 567 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP- 567 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC-
Confidence 3444445555556777777777777777655521111 123567899999854 344 888998877665544320
Q ss_pred CCCCceee--eecc--ccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCC-CCcc
Q 015438 303 NVKGKPAG--VLMG--HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ-ARDL 377 (407)
Q Consensus 303 ~~~~~~~~--~~~~--~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l 377 (407)
....+. .+.+ -...|....|-.|..+|.++..||.+.-|-+....-...-.....-...++..-.|+.. ...+
T Consensus 568 --d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~v 645 (1096)
T KOG1897|consen 568 --DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAV 645 (1096)
T ss_pred --CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEE
Confidence 111111 1111 12345556676678999999999998877665543332222222233445555556444 3344
Q ss_pred CCCCCcceEEEe
Q 015438 378 KHPCDQSVATYK 389 (407)
Q Consensus 378 ~~~~~~~v~~~~ 389 (407)
.+.+|+...+|.
T Consensus 646 fa~sdrP~viY~ 657 (1096)
T KOG1897|consen 646 FALSDRPTVIYS 657 (1096)
T ss_pred EEeCCCCEEEEe
Confidence 444555555554
No 435
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.75 E-value=5.8 Score=36.88 Aligned_cols=150 Identities=12% Similarity=0.017 Sum_probs=86.0
Q ss_pred cEEEEEEeCCCCEEEEeeCCCeEEEEEcCCC--eeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCC
Q 015438 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 306 (407)
Q Consensus 229 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 306 (407)
....+..++++.+++++.....++-||--.. +.+. ......++.+.+. +++.+++++ .+|.+..=+- .+
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~--~~~~~~l~~v~~~-~dg~l~l~g-~~G~l~~S~d-----~G 310 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN--RASARRIQNMGWR-ADGGLWLLT-RGGGLYVSKG-----TG 310 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEec--CCCccceeeeeEc-CCCCEEEEe-CCceEEEecC-----CC
Confidence 4556677888887777754433334443221 2221 2345678899996 777777655 5555444222 22
Q ss_pred c-----eeeeecc--ccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCC
Q 015438 307 K-----PAGVLMG--HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (407)
Q Consensus 307 ~-----~~~~~~~--~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 379 (407)
. ....... -...++.+.|.+++..++ ++.+|.+.... ..++.=... ........++..+.|.++++.+..
T Consensus 311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~tW~~~-~~~~~~~~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGKSWKRD-KGADNIAANLYSVKFFDDKKGFVL 387 (398)
T ss_pred CcccccceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCcceeEc-cccCCCCcceeEEEEcCCCceEEE
Confidence 2 1222211 123588999998877555 45577666553 333221111 101223345668888888999999
Q ss_pred CCCcceEEEeC
Q 015438 380 PCDQSVATYKG 390 (407)
Q Consensus 380 ~~~~~v~~~~g 390 (407)
+.++.|..|.|
T Consensus 388 G~~G~il~~~~ 398 (398)
T PLN00033 388 GNDGVLLRYLG 398 (398)
T ss_pred eCCcEEEEeCC
Confidence 99998888764
No 436
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.64 E-value=0.011 Score=54.04 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=100.3
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEE-EeCCCeEEEEECCCCcee
Q 015438 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTME 204 (407)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~dg~i~vwd~~~~~~~ 204 (407)
......|-|.+.-++.++.+..+..||-... .... ....+...+++|..++..++. +-..+.+.+||+.+....
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~le----~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILE----LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhcc-eecc----cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 3345678888877888888889999985442 2211 122234677888887776654 556789999999876543
Q ss_pred ccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCE
Q 015438 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284 (407)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~ 284 (407)
.+.... .++... +.|++.+..++.|...|.+.+++..+.+.+..+-.|...+++++|. .. ++
T Consensus 111 qLE~gg--------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~-lE-d~ 172 (615)
T KOG2247|consen 111 QLESGG--------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT-LE-DY 172 (615)
T ss_pred HHhccC--------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec-cc-ce
Confidence 332211 122222 7899988899999999999999998877766664588999999996 33 34
Q ss_pred EEEEeCCCcEEE
Q 015438 285 IYSGSDDNLCKV 296 (407)
Q Consensus 285 l~s~~~d~~i~v 296 (407)
.+.++.|..+.+
T Consensus 173 vil~dcd~~L~v 184 (615)
T KOG2247|consen 173 VILCDCDNTLSV 184 (615)
T ss_pred eeecCcHHHHHH
Confidence 555655544433
No 437
>PRK13684 Ycf48-like protein; Provisional
Probab=93.58 E-value=5.6 Score=36.13 Aligned_cols=154 Identities=10% Similarity=0.041 Sum_probs=87.2
Q ss_pred ccEEEEEEeCCCCEEEEeeCCCeEEEE-EcCCCeeee-eeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCC
Q 015438 228 FGIFSLKFSTDGRELVAGSSDDCIYVY-DLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 305 (407)
Q Consensus 228 ~~v~~~~~s~~~~~l~~~~~dg~i~i~-d~~~~~~~~-~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~ 305 (407)
..+.++.+.|++.+++++ ..|.+..- |- .++.-. ........++++.+. +++.+++.+ ..|.+++=... .
T Consensus 173 g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~-~~g~~~~vg-~~G~~~~~s~d----~ 244 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQ-PDGNLWMLA-RGGQIRFNDPD----D 244 (334)
T ss_pred ceEEEEEECCCCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEc-CCCCEEEEe-cCCEEEEccCC----C
Confidence 368889999988766655 45655432 22 222111 122345678899997 667766554 55766542222 2
Q ss_pred Cceeeeecc----ccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCcccccCCCccccccceeeeCCCCCCccCCCC
Q 015438 306 GKPAGVLMG----HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 381 (407)
Q Consensus 306 ~~~~~~~~~----~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 381 (407)
+..-..... -...+.++.+.+++..++ ++.+|.|. .....++.-..... .......+..+.|..+++.++++.
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPV-GEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCc-CCCCCcceEEEEEeCCCceEEECC
Confidence 221111111 123578889999877555 44567554 34443333222111 112224566777777888899999
Q ss_pred CcceEEEeCCc
Q 015438 382 DQSVATYKGHS 392 (407)
Q Consensus 382 ~~~v~~~~gh~ 392 (407)
.+.|-.|+|..
T Consensus 322 ~G~il~~~~~~ 332 (334)
T PRK13684 322 RGVLLRYVGSA 332 (334)
T ss_pred CceEEEecCCC
Confidence 99999888754
No 438
>PLN02153 epithiospecifier protein
Probab=93.50 E-value=5.8 Score=36.11 Aligned_cols=69 Identities=9% Similarity=0.045 Sum_probs=35.2
Q ss_pred CCCEEEEEeCC-------CeEEEEEcCCCeEEeEeeeccccc---eEEEEEEECCCCCeEEEEeCC-----CeEEEEECC
Q 015438 135 DGSLFVAGFQA-------SQIRIYDVERGWKIQKDILAKSLR---WTVTDTSLSPDQRHLVYASMS-----PIVHIVDVG 199 (407)
Q Consensus 135 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~d-----g~i~vwd~~ 199 (407)
++..++.|+.+ ..+.+||+.+..-........... .....+.+ ++++++.|+.+ ..+.+||..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 35666666653 358888987753221111100000 01222222 56677777753 257788887
Q ss_pred CCceec
Q 015438 200 SGTMES 205 (407)
Q Consensus 200 ~~~~~~ 205 (407)
+.+...
T Consensus 110 t~~W~~ 115 (341)
T PLN02153 110 KNEWTF 115 (341)
T ss_pred CCEEEE
Confidence 765543
No 439
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.46 E-value=5.4 Score=36.16 Aligned_cols=109 Identities=18% Similarity=0.146 Sum_probs=55.9
Q ss_pred cEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCee---eeee----eccCCCeEEEEecCC---CCCEEEEEeCC------C
Q 015438 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRI----LAHTSDVNTVCFGDE---SGHLIYSGSDD------N 292 (407)
Q Consensus 229 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~----~~~~~~v~~i~~s~~---~~~~l~s~~~d------~ 292 (407)
..+.|+|.|+|++++ +...|.|++++ ..+.. +..+ .........++++|. ++.+.++.+.. .
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 357899999997665 45699999999 33433 2222 123456789999852 24333333321 2
Q ss_pred --cEEEEeCcccCC---CCc-eeeeecc---ccCCeEEEEecCCCCEEEEEeCCCc
Q 015438 293 --LCKVWDRRCLNV---KGK-PAGVLMG---HLEGITFIDSRGDGRYLISNGKDQA 339 (407)
Q Consensus 293 --~i~vwd~~~~~~---~~~-~~~~~~~---~~~~i~~~~~s~~~~~l~s~~~dg~ 339 (407)
.|.-|....... ..+ .+..+.. ....-..|.|.|||.+.++.+..+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 233333321100 011 1111121 1223467999999987777775554
No 440
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.33 E-value=10 Score=38.53 Aligned_cols=210 Identities=17% Similarity=0.157 Sum_probs=109.9
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccce-----EEEEEEEC----------------CCCCeEEEEeCCCeEE
Q 015438 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLS----------------PDQRHLVYASMSPIVH 194 (407)
Q Consensus 136 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~s----------------p~~~~l~~~~~dg~i~ 194 (407)
+..++.++.++.|.-.|..+|+.+.+......... ....+.+. ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55677777888999999999877665433221110 01122221 1345788888999999
Q ss_pred EEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeC--CCCEEEEeeC----------CCeEEEEEcCCCeee
Q 015438 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSS----------DDCIYVYDLEANKLS 262 (407)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~----------dg~i~i~d~~~~~~~ 262 (407)
-.|.++++....+...... ++... .......-..+.-.| .+..+++|+. +|.|+-+|.++++.+
T Consensus 274 ALDA~TGk~~W~fg~~G~v---dl~~~-~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTV---DLTAG-MGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCCCEEEEecCCCce---eeecc-cCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 9999999875433211100 00000 000000000111111 1335666643 688999999999987
Q ss_pred eeeecc---------CC--------Ce-EEEEecCCCCCEEEEEeC------------------CCcEEEEeCcccCCCC
Q 015438 263 LRILAH---------TS--------DV-NTVCFGDESGHLIYSGSD------------------DNLCKVWDRRCLNVKG 306 (407)
Q Consensus 263 ~~~~~~---------~~--------~v-~~i~~s~~~~~~l~s~~~------------------d~~i~vwd~~~~~~~~ 306 (407)
-.+... .+ .+ ..+++. +...+++.+.. .+.|.-.|.+ ++
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D-~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~----TG 424 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYD-EKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDAT----TG 424 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEc-CCCCeEEEeCCCccccccCCccccCcccccceEEEEeCC----CC
Confidence 655321 00 01 123333 22233333221 1234444554 55
Q ss_pred ceeeeecc--cc-------CCeEEEEecC-CCC---EEEEEeCCCcEEEEECCCCCCcccc
Q 015438 307 KPAGVLMG--HL-------EGITFIDSRG-DGR---YLISNGKDQAIKLWDIRKMSSNASC 354 (407)
Q Consensus 307 ~~~~~~~~--~~-------~~i~~~~~s~-~~~---~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (407)
+..-.++. |. ....-+.+.. +|+ .++.++++|.+.+.|-++++.+...
T Consensus 425 k~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 425 KERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred ceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 55544432 11 0111222322 553 7889999999999999999876653
No 441
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.85 E-value=0.77 Score=38.72 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=51.4
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCeEEeEee----ecc-------ccceEEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 015438 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDI----LAK-------SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (407)
Q Consensus 132 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~-------~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~ 200 (407)
+..+++++++...+|.+++||+.+++.+.... ... .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 55578889999999999999999875544331 011 2445688899998888777655 47788998765
Q ss_pred Ccee
Q 015438 201 GTME 204 (407)
Q Consensus 201 ~~~~ 204 (407)
+...
T Consensus 97 ~~W~ 100 (219)
T PF07569_consen 97 GCWI 100 (219)
T ss_pred ceeE
Confidence 5443
No 442
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.80 E-value=0.95 Score=38.16 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=50.3
Q ss_pred ECCCCCeEEEEeCCCeEEEEECCCCceeccc-cccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEE
Q 015438 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (407)
Q Consensus 177 ~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 255 (407)
+..++.+|++-+.+|.+++||+.+++..... .+........ .........|..+.++.+|.-|++-+ +|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~---~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP---VSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc---cccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 3457889999999999999999987653222 1111111000 00002344788899998887666554 57889998
Q ss_pred cCCCe
Q 015438 256 LEANK 260 (407)
Q Consensus 256 ~~~~~ 260 (407)
..-+.
T Consensus 94 ~~L~~ 98 (219)
T PF07569_consen 94 PDLGC 98 (219)
T ss_pred cccce
Confidence 76443
No 443
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.61 E-value=7.6 Score=35.03 Aligned_cols=138 Identities=9% Similarity=0.028 Sum_probs=65.9
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCeE---EeEeeeccccceEEEEEEECCCCCeEEEEeC-----CCeEEEEECCCC
Q 015438 135 DGSLFVAGFQA-----SQIRIYDVERGWK---IQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----SPIVHIVDVGSG 201 (407)
Q Consensus 135 ~~~~l~~~~~d-----g~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----dg~i~vwd~~~~ 201 (407)
++.+++.|+.+ ..+..||+.+... .................. -++++.+.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 45666777654 3577777766532 111111111111111122 25666677764 236888888876
Q ss_pred ceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCC----eEEEEEcCCCeeee--eeeccCCC----
Q 015438 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEANKLSL--RILAHTSD---- 271 (407)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~--~~~~~~~~---- 271 (407)
+...+..+.... .........++++.+.|+.++ .+.+||+.+.+-.. .+.....+
T Consensus 150 ~W~~~~~~p~~~---------------r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~ 214 (323)
T TIGR03548 150 EWFELPDFPGEP---------------RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLL 214 (323)
T ss_pred CeeECCCCCCCC---------------CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceecc
Confidence 654432211100 111122233566777777653 35788988765321 11100111
Q ss_pred -eEEEEecCCCCCEEEEEeCC
Q 015438 272 -VNTVCFGDESGHLIYSGSDD 291 (407)
Q Consensus 272 -v~~i~~s~~~~~~l~s~~~d 291 (407)
...+.. .++.+++.|+.+
T Consensus 215 ~~~~~~~--~~~~iyv~GG~~ 233 (323)
T TIGR03548 215 GAASIKI--NESLLLCIGGFN 233 (323)
T ss_pred ceeEEEE--CCCEEEEECCcC
Confidence 122233 356788888866
No 444
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.46 E-value=3.8 Score=31.15 Aligned_cols=106 Identities=20% Similarity=0.218 Sum_probs=64.0
Q ss_pred EEECCCCCeEEEEeCCCeEEEEECCCCce--------eccccccccccceeeeecCCCCccccEEEEEEeC-----CCCE
Q 015438 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTM--------ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRE 241 (407)
Q Consensus 175 ~~~sp~~~~l~~~~~dg~i~vwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~ 241 (407)
-.|......|+.++..|+|.|.+...... +..+++. ..|++|+-.+ ....
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-----------------~~italaaG~l~~~~~~D~ 66 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-----------------QEITALAAGRLKPDDGRDC 66 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-----------------CceEEEEEEecCCCCCcCE
Confidence 35556666788888889999998764322 1112111 1566665444 3457
Q ss_pred EEEeeCCCeEEEEEcCCCeeeeeeeccCCCeEEEEec---CCCCCEEEEEeCCCcEEEEeCc
Q 015438 242 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG---DESGHLIYSGSDDNLCKVWDRR 300 (407)
Q Consensus 242 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s---~~~~~~l~s~~~d~~i~vwd~~ 300 (407)
|+.|+.. .+..||+....-+..- .-...|.++.+- .....++++| .+..|.-||..
T Consensus 67 LliGt~t-~llaYDV~~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~ 125 (136)
T PF14781_consen 67 LLIGTQT-SLLAYDVENNSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYE 125 (136)
T ss_pred EEEeccc-eEEEEEcccCchhhhh-hCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCC
Confidence 8888765 6999999877655433 234567777663 1233444444 45677777763
No 445
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.24 E-value=1 Score=41.25 Aligned_cols=165 Identities=12% Similarity=0.154 Sum_probs=98.1
Q ss_pred eEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEE-EEEEeCCCCEEEEeeCC
Q 015438 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF-SLKFSTDGRELVAGSSD 248 (407)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d 248 (407)
..|..+-..||++.+..-+. ..+.|+++.+....... +.+...+ .....|+ .+..-..|.-+++++.|
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rk-l~~dspg---------~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRK-LVDDSPG---------DSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhh-hhhcCCC---------chHHHHHHHHHHHhCceeEEEEcCC
Confidence 45777788999998887665 67889988766543321 1111000 0111222 12222345668888899
Q ss_pred CeEEEE-EcCCC-e----eeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEE
Q 015438 249 DCIYVY-DLEAN-K----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (407)
Q Consensus 249 g~i~i~-d~~~~-~----~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~ 322 (407)
|.|.-| |.+.+ + .++.+.-...++..+.- ..+.+-+++-+..|++.++... ..+++ .+..-...+.-+
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~p-e~~rkgF~~l~~~G~L~~f~st----~~~~l-L~~~~~~~~~~~ 363 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLP-ETNRKGFYSLYRNGTLQSFYST----SEKLL-LFERAYQAPQLV 363 (733)
T ss_pred CceeeeeeeecCCCCcceeeeccccCcccceeecc-ccccceEEEEcCCCceeeeecc----cCcce-ehhhhhcCccee
Confidence 988777 44432 2 22222222344444443 2445567778888888888764 22222 222233466778
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCCCCcc
Q 015438 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (407)
Q Consensus 323 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (407)
++||++.+|++-. .|.++++.+.+..+..
T Consensus 364 ~~Sp~~~~Ll~e~-~gki~~~~l~Nr~Pei 392 (733)
T COG4590 364 AMSPNQAYLLSED-QGKIRLAQLENRNPEI 392 (733)
T ss_pred eeCcccchheeec-CCceEEEEecCCCCCc
Confidence 9999999988654 6789999999865543
No 446
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.12 E-value=11 Score=35.69 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=21.8
Q ss_pred ccEEEEEEeCCCCEEEEeeCCCeEEEE
Q 015438 228 FGIFSLKFSTDGRELVAGSSDDCIYVY 254 (407)
Q Consensus 228 ~~v~~~~~s~~~~~l~~~~~dg~i~i~ 254 (407)
..|..+..++.|..++..+.+|.+.++
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEE
Confidence 368889999999999888889865554
No 447
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.09 E-value=4.9 Score=42.14 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=27.3
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVER 155 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 155 (407)
......++|+|...++|.+...|.|++|-...
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccc
Confidence 44667889999999999999999999997653
No 448
>PLN02193 nitrile-specifier protein
Probab=92.03 E-value=12 Score=35.92 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=71.7
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCeEEeEeeec---cccceEEEEEEECCCCCeEEEEeCCC-----eEEEEECCCC
Q 015438 135 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILA---KSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGSG 201 (407)
Q Consensus 135 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~dg-----~i~vwd~~~~ 201 (407)
++.+++.|+.+ +.+.+||+.+.... ..... ...... .++.. -++++.+.|+.++ .+..||+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~-~l~~~~~~P~~R~~-h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWK-LLTPVEEGPTPRSF-HSMAA-DEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEE-EcCcCCCCCCCccc-eEEEE-ECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 45566666654 35888898775322 11111 111111 11211 2566677776543 4677888776
Q ss_pred ceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC----CeEEEEEcCCCeeeeeeec----cCCCeE
Q 015438 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRILA----HTSDVN 273 (407)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~----~~~~v~ 273 (407)
+........... .... .. .+.. -++++++.++.+ ..+.+||+.+.+-...-.. ......
T Consensus 305 ~W~~~~~~~~~~-------~~R~----~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~ 371 (470)
T PLN02193 305 KWFHCSTPGDSF-------SIRG----GA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVF 371 (470)
T ss_pred EEEeCCCCCCCC-------CCCC----Cc-EEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCccee
Confidence 543322110000 0000 11 1111 256677777655 4589999987754322110 111112
Q ss_pred EEEecCCCCCEEEEEeCC--------------CcEEEEeCc
Q 015438 274 TVCFGDESGHLIYSGSDD--------------NLCKVWDRR 300 (407)
Q Consensus 274 ~i~~s~~~~~~l~s~~~d--------------~~i~vwd~~ 300 (407)
+++. .++++++.|+.. +.+.+||+.
T Consensus 372 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 372 ASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEEE--ECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 2222 356777787753 247788876
No 449
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.91 E-value=9.4 Score=34.53 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=84.0
Q ss_pred CCceEEEEECCCCCEEEEEeCCCe------EEEEEcCC--C----eEEeEeeeccccce--------EEEEEEECCCCCe
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQ------IRIYDVER--G----WKIQKDILAKSLRW--------TVTDTSLSPDQRH 183 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~------i~iwd~~~--~----~~~~~~~~~~~~~~--------~v~~~~~sp~~~~ 183 (407)
-+.+..+.+.+++..+++.+.+|. +..+++.. + -............+ -.-++++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 466788889866666666667776 55555443 1 01111111111111 2336777677877
Q ss_pred EEEEeCC------CeEEEEECCCCceeccccccccccceeeeec--CCCCccccEEEEEEeCCCCEEEEeeCCC------
Q 015438 184 LVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAA--DDGGYSFGIFSLKFSTDGRELVAGSSDD------ 249 (407)
Q Consensus 184 l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg------ 249 (407)
+++.=.+ ..|..++.. +.....+.+.... ..... .....+...-+|+++|+|+.|+++.+..
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~---~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAF---LPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEcccccc---ccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 7776666 778888866 5443333221110 00000 1112445788999999999777664322
Q ss_pred ----------eEEEEEcCC-Ceeeee----eec-----cCCCeEEEEecCCCCCEEEE
Q 015438 250 ----------CIYVYDLEA-NKLSLR----ILA-----HTSDVNTVCFGDESGHLIYS 287 (407)
Q Consensus 250 ----------~i~i~d~~~-~~~~~~----~~~-----~~~~v~~i~~s~~~~~~l~s 287 (407)
.|..||..+ ++.... +.. ....+..+.+- +++++|+.
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al-~d~~lLvL 231 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL-PDGRLLVL 231 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE-CCCcEEEE
Confidence 244455554 222222 221 34567788886 66666554
No 450
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.73 E-value=4 Score=37.96 Aligned_cols=102 Identities=13% Similarity=0.015 Sum_probs=58.8
Q ss_pred ccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCcccc--EEEEEEeCC-CC-
Q 015438 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG--IFSLKFSTD-GR- 240 (407)
Q Consensus 165 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~-~~- 240 (407)
.......+.++..+|++++.|+...-|.|.++|+.++......+-...-..--+.. ....+... -....-.+. ..
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~-~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEV-PEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEe-ecccccccccccccCCCCcceEE
Confidence 34445568899999999988888778999999999887665544222111000000 00000000 000000000 11
Q ss_pred EEEEeeCCCeEEEEEcCCCeeeeeeec
Q 015438 241 ELVAGSSDDCIYVYDLEANKLSLRILA 267 (407)
Q Consensus 241 ~l~~~~~dg~i~i~d~~~~~~~~~~~~ 267 (407)
+++-+-.-|.|.||.++++..+..+..
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 344466789999999999988777654
No 451
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.67 E-value=6.7 Score=32.34 Aligned_cols=172 Identities=16% Similarity=0.122 Sum_probs=82.2
Q ss_pred CCCEEEEEeC--CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEE-EeCCCeEEEEECCCCceeccccccc
Q 015438 135 DGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTMESLANVTE 211 (407)
Q Consensus 135 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~ 211 (407)
+|.++.+.+. ...|++||+++++.+........ .+..=-...-+..+.. .=.+|.-.++|..+-++...+...
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~---~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~- 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPD---TVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE- 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCc---cccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC-
Confidence 4556666554 34699999998866554332210 1111001111222222 235677778888776654443322
Q ss_pred cccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeec--cC---CCeEEEEecCCCCCEEE
Q 015438 212 IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA--HT---SDVNTVCFGDESGHLIY 286 (407)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~---~~v~~i~~s~~~~~~l~ 286 (407)
+.=..++ .|+..|+.+....+++.-|.++.....++.. .. ..++.+.| -+|.+.+
T Consensus 131 ----------------GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~--VdG~lyA 190 (262)
T COG3823 131 ----------------GEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW--VDGELYA 190 (262)
T ss_pred ----------------Ccceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee--eccEEEE
Confidence 1223333 3555566665566777777766543332221 11 12233444 2344333
Q ss_pred EEeCCCcEEEEeCcccCCCCceeeee------------ccccCCeEEEEecCCC-CEEEEE
Q 015438 287 SGSDDNLCKVWDRRCLNVKGKPAGVL------------MGHLEGITFIDSRGDG-RYLISN 334 (407)
Q Consensus 287 s~~~d~~i~vwd~~~~~~~~~~~~~~------------~~~~~~i~~~~~s~~~-~~l~s~ 334 (407)
-.-.+..|...|.. +++.+..+ ..|..-.+.+++.|++ ++++||
T Consensus 191 NVw~t~~I~rI~p~----sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 191 NVWQTTRIARIDPD----SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eeeeecceEEEcCC----CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 33333333333333 23322221 1234456789999987 555555
No 452
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.61 E-value=13 Score=36.77 Aligned_cols=96 Identities=13% Similarity=0.134 Sum_probs=57.2
Q ss_pred ccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeee--ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCC
Q 015438 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 305 (407)
Q Consensus 228 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~ 305 (407)
..+..+..||+.++|+-=...|.|.+-+....+....+. .|. +...++|+ .+. -++.+.+..+.+... .
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wc-gnd--aVvl~~e~~l~lvgp-----~ 287 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWC-GND--AVVLSWEVNLMLVGP-----P 287 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceee-cCC--ceEEEEeeeEEEEcC-----C
Confidence 457788899999999999999999999888777666554 222 22356665 222 223333344444433 3
Q ss_pred CceeeeeccccCCeEEEEecCCCCEEEEEe
Q 015438 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (407)
Q Consensus 306 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 335 (407)
+..+.-+..+.. + +.--+||-.+++.+
T Consensus 288 gd~V~f~yd~t~-~--l~~E~DGVRI~t~t 314 (829)
T KOG2280|consen 288 GDSVQFYYDETA-I--LSAEVDGVRIITST 314 (829)
T ss_pred CCccccccCCCc-e--eeeccCeeEEeccc
Confidence 444444443332 1 44455776666655
No 453
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.48 E-value=12 Score=34.73 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCeeee--eeeccCCCeEEEEecCCCCCEEEEEeC
Q 015438 249 DCIYVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSD 290 (407)
Q Consensus 249 g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~s~~~~~~l~s~~~ 290 (407)
..+.+||..+.+-.. .+......-.++.. .++++.+.|+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~--~~~~iYv~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVI--KGNKLWLINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEE--ECCEEEEEeee
Confidence 358899988765322 22111111233444 35667777764
No 454
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.39 E-value=5.3 Score=33.15 Aligned_cols=106 Identities=18% Similarity=0.250 Sum_probs=62.4
Q ss_pred CEEEEeeCCCeEEEEEcCC--CeeeeeeeccCCCeEEEEecCCCCCEEEEEeCC---C---cEEEEe-CcccCCCCceee
Q 015438 240 RELVAGSSDDCIYVYDLEA--NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---N---LCKVWD-RRCLNVKGKPAG 310 (407)
Q Consensus 240 ~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d---~---~i~vwd-~~~~~~~~~~~~ 310 (407)
+.|+.+.....|.+|++.+ .+.+..+. --+.|..+.++ ..|++++|--.+ . .+|+|- .+.......++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~-~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYS-EAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEec-cccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 3454546677899999983 34555553 34789999998 789999986432 2 566641 121100111111
Q ss_pred -eecc---------------------ccCCeEEEEecC-CCCEEEEEeCCCcEEEEECCCCC
Q 015438 311 -VLMG---------------------HLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMS 349 (407)
Q Consensus 311 -~~~~---------------------~~~~i~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~ 349 (407)
.+-| ...++.+++..| .|+.+ .|+ ++++.+|.+....
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQT 166 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEE
Confidence 1112 234567777776 45544 444 5789999887543
No 455
>PHA02790 Kelch-like protein; Provisional
Probab=91.07 E-value=8.2 Score=37.09 Aligned_cols=142 Identities=12% Similarity=0.044 Sum_probs=70.8
Q ss_pred CCCCEEEEEeCC--CeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC---eEEEEECCCCceecccc
Q 015438 134 ADGSLFVAGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---IVHIVDVGSGTMESLAN 208 (407)
Q Consensus 134 ~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~ 208 (407)
-++...+.|+.+ ..+..||..++... ..............+. -+++..+.|+.++ .+..||..+........
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~-~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWV-NMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEE-ECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence 367777777753 35788887665222 1111111111122222 3677777777553 46678877665543322
Q ss_pred ccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeee--eeeeccCCCeEEEEecCCCCCEEE
Q 015438 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIY 286 (407)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~i~~s~~~~~~l~ 286 (407)
..... ... +++ .-++++.+.| |.+.+||.++.+-. ..+....... .++. -++++.+
T Consensus 394 m~~~r--------------~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v--~~~~IYv 451 (480)
T PHA02790 394 TYYPH--------------YKS-CAL-VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNP-ELII--VDNKLLL 451 (480)
T ss_pred CCCcc--------------ccc-eEE-EECCEEEEEC---CceEEecCCCCcEeEcCCCCCCcccc-EEEE--ECCEEEE
Confidence 21100 011 121 2356655666 35778998766432 2222112222 2333 3567888
Q ss_pred EEeCC-----CcEEEEeCc
Q 015438 287 SGSDD-----NLCKVWDRR 300 (407)
Q Consensus 287 s~~~d-----~~i~vwd~~ 300 (407)
.||.+ ..+..||..
T Consensus 452 iGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 452 IGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred ECCcCCCcccceEEEEECC
Confidence 88754 345666654
No 456
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.97 E-value=9.5 Score=33.51 Aligned_cols=94 Identities=18% Similarity=0.306 Sum_probs=59.7
Q ss_pred CCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEee------CCCeEEEEEcCCCeeee
Q 015438 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSL 263 (407)
Q Consensus 190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~i~d~~~~~~~~ 263 (407)
-..|++||..+.+...... +-.+.|++|.|..+.++++.|. ....+..||..+..- .
T Consensus 15 C~~lC~yd~~~~qW~~~g~----------------~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~ 77 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGN----------------GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-S 77 (281)
T ss_pred CCEEEEEECCCCEeecCCC----------------CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-e
Confidence 3569999998876644332 2345899999997666777664 355688999887653 2
Q ss_pred eeec-----cCCCeEEEEecCCCCC-EEEEEe-C--CCcEEEEeCc
Q 015438 264 RILA-----HTSDVNTVCFGDESGH-LIYSGS-D--DNLCKVWDRR 300 (407)
Q Consensus 264 ~~~~-----~~~~v~~i~~s~~~~~-~l~s~~-~--d~~i~vwd~~ 300 (407)
.+.. -.++|..+.+...+.. +.+.|. . +..|..||-.
T Consensus 78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred ecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 2322 2478888888544544 444443 2 3357777754
No 457
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.96 E-value=0.034 Score=50.96 Aligned_cols=136 Identities=14% Similarity=0.168 Sum_probs=90.5
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEE-EeeCCCe
Q 015438 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDC 250 (407)
Q Consensus 172 v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~ 250 (407)
.....|-|.+.-++.++.+..+..||-......... .++....++|..++..++ .+-..+.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n------------------~tg~aldm~wDkegdvlavlAek~~p 98 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELN------------------PTGKALDMAWDKEGDVLAVLAEKTGP 98 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceecccC------------------CchhHhhhhhccccchhhhhhhcCCC
Confidence 345678888777888888888888885543322111 223566788888887544 4566789
Q ss_pred EEEEEcCCCeeeeeee-ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCC
Q 015438 251 IYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 329 (407)
Q Consensus 251 i~i~d~~~~~~~~~~~-~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 329 (407)
+++||+.+... ..+. +....-.-+.|+ +....++.+...|.+.|++.. ....+...-.|...++++++.+.+.
T Consensus 99 iylwd~n~eyt-qqLE~gg~~s~sll~ws-Kg~~el~ig~~~gn~viynhg----tsR~iiv~Gkh~RRgtq~av~lEd~ 172 (615)
T KOG2247|consen 99 IYLWDVNSEYT-QQLESGGTSSKSLLAWS-KGTPELVIGNNAGNIVIYNHG----TSRRIIVMGKHQRRGTQIAVTLEDY 172 (615)
T ss_pred eeechhhhhhH-HHHhccCcchHHHHhhc-cCCccccccccccceEEEecc----chhhhhhhcccccceeEEEecccce
Confidence 99999976432 1111 112222226887 667778888889999999987 5454444444888999999998765
Q ss_pred EE
Q 015438 330 YL 331 (407)
Q Consensus 330 ~l 331 (407)
.+
T Consensus 173 vi 174 (615)
T KOG2247|consen 173 VI 174 (615)
T ss_pred ee
Confidence 43
No 458
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.86 E-value=3.5 Score=43.17 Aligned_cols=146 Identities=14% Similarity=0.241 Sum_probs=82.4
Q ss_pred CCCeEEEEEcCCCeEEeEeeeccccceEEEEEE--------ECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccc
Q 015438 144 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTS--------LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (407)
Q Consensus 144 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~--------~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 215 (407)
-|+.+.+|+.+++......... ...|..+. |.|.=+++++-+.--.|.++-+.-.+........ .++
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~---shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f--~~~ 171 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGL---SHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIF--NTS 171 (1311)
T ss_pred eCCeEEEEEcCCCCccccccch---hhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccc--ccc
Confidence 5889999999986444432222 22454443 2333345555555566777655422211111000 000
Q ss_pred eeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCC--C---e-e----------------eeeee-ccCCCe
Q 015438 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--N---K-L----------------SLRIL-AHTSDV 272 (407)
Q Consensus 216 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~--~---~-~----------------~~~~~-~~~~~v 272 (407)
+... -....|+|+....+|+.+++| .||.|+-.-... + + + +..+. .+..+|
T Consensus 172 ~~i~-----~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI 245 (1311)
T KOG1900|consen 172 FKIS-----VDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPI 245 (1311)
T ss_pred eeee-----cCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcc
Confidence 1111 123368999988888866655 566444322111 1 1 1 11222 456799
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEeCcc
Q 015438 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRC 301 (407)
Q Consensus 273 ~~i~~s~~~~~~l~s~~~d~~i~vwd~~~ 301 (407)
..+.+. ...+++.+-+..++|.+||+..
T Consensus 246 ~qi~ID-~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 246 RQITID-NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeEec-cccceeeeeccCceEEEEEccC
Confidence 999994 8888999999999999999973
No 459
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.82 E-value=13 Score=33.96 Aligned_cols=41 Identities=10% Similarity=0.096 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCeee--eeeeccCCCeEEEEecCCCCCEEEEEeCC
Q 015438 249 DCIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGSDD 291 (407)
Q Consensus 249 g~i~i~d~~~~~~~--~~~~~~~~~v~~i~~s~~~~~~l~s~~~d 291 (407)
..|.+||..+.+-. ..+......-.+++. .++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~--~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVH--KGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEE--ECCEEEEEeeee
Confidence 46889998876432 222111111223333 356777777753
No 460
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.65 E-value=22 Score=36.50 Aligned_cols=173 Identities=12% Similarity=0.053 Sum_probs=100.2
Q ss_pred cCCCceEEEEEC---C----CCCEEEEEeCCCeEEEEEcCCC---------------eEEeEeeeccccceEEEEEEECC
Q 015438 122 QTTSRAYVSQFS---A----DGSLFVAGFQASQIRIYDVERG---------------WKIQKDILAKSLRWTVTDTSLSP 179 (407)
Q Consensus 122 ~h~~~v~~~~~s---~----~~~~l~~~~~dg~i~iwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~sp 179 (407)
....+|..|+|+ . ..++|++= ....+.|+...-. ..+..+....-...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 457899999998 2 22455544 4567777772111 11111111112234678899998
Q ss_pred -CCCeEEEEeCCCeEEEEECCCCcee--ccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEc
Q 015438 180 -DQRHLVYASMSPIVHIVDVGSGTME--SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (407)
Q Consensus 180 -~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 256 (407)
+.+.||+....|...||++...... ..........+. + ..+......-..+.|.++.+.|++++.. .+.++|+
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gs-i--~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~ 231 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGS-I--IFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDF 231 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCcc-c--cCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEEC
Confidence 5668999999999999999322111 111111111110 0 0111122345678999888888888654 6999999
Q ss_pred CCCeeee--eeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCc
Q 015438 257 EANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (407)
Q Consensus 257 ~~~~~~~--~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~ 300 (407)
++..... ........|.++.-+|.+..+++.-+. ..|...|+.
T Consensus 232 ~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~ 276 (765)
T PF10214_consen 232 ESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVK 276 (765)
T ss_pred CCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEcc
Confidence 9876532 122344678888887554444444332 578888886
No 461
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=6.7 Score=37.00 Aligned_cols=87 Identities=17% Similarity=0.218 Sum_probs=52.5
Q ss_pred eEEEEEEECCCCCeEEEEeCCCeEEEEECC---------CCceeccccccccccceeeeecCCCCccccEEEEEEeCCC-
Q 015438 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVG---------SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG- 239 (407)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~- 239 (407)
-.|..+..++.|..++-++.+|.+.++--+ .++.....+...... ..... ...-.+...+|+|+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~----~~fts-s~~ltl~Qa~WHP~S~ 178 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE----RFFTS-STSLTLKQAAWHPSSI 178 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc----eeecc-CCceeeeeccccCCcc
Confidence 357888899999999999999966554311 121111111111100 00000 122357788999965
Q ss_pred --CEEEEeeCCCeEEEEEcCCCee
Q 015438 240 --RELVAGSSDDCIYVYDLEANKL 261 (407)
Q Consensus 240 --~~l~~~~~dg~i~i~d~~~~~~ 261 (407)
..|..-+.|..|++||+.....
T Consensus 179 ~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 179 LDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred CCceEEEEecCcEEEEEecCCcch
Confidence 5777788899999999976543
No 462
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.61 E-value=14 Score=34.30 Aligned_cols=105 Identities=10% Similarity=0.016 Sum_probs=61.6
Q ss_pred cEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCe-----eeeeeec--cCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcc
Q 015438 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-----LSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 301 (407)
Q Consensus 229 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~--~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~ 301 (407)
.+..+.|.+++..++++ .+|.+.. ....++ ....+.. ....+.++.|. +++..+ .++..|.+....-
T Consensus 282 ~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~-~d~~~~-a~G~~G~v~~s~D-- 355 (398)
T PLN00033 282 RIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYR-SKKEAW-AAGGSGILLRSTD-- 355 (398)
T ss_pred ceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEc-CCCcEE-EEECCCcEEEeCC--
Confidence 67889999999877665 5665544 333333 1222211 12358889996 566555 5556777666543
Q ss_pred cCCCCceeeee---ccccCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 015438 302 LNVKGKPAGVL---MGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (407)
Q Consensus 302 ~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw 343 (407)
.++.-... ..-....+.+.|.++++.+++| .+|.|.-|
T Consensus 356 ---~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 356 ---GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred ---CCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 23332222 2234567899998776655554 57776654
No 463
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.49 E-value=3.1 Score=43.51 Aligned_cols=157 Identities=12% Similarity=0.043 Sum_probs=93.5
Q ss_pred eccccccceeeeeccCCCCcccccCCCceEEEEEC--------CCCCEEEEEeCCCeEEEEEcCCCeEEeE------eee
Q 015438 99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFS--------ADGSLFVAGFQASQIRIYDVERGWKIQK------DIL 164 (407)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--------~~~~~l~~~~~dg~i~iwd~~~~~~~~~------~~~ 164 (407)
+...|+..++|++........+++....|..+..- |.=+++++.+.--.|.|+-+.-...... ...
T Consensus 94 WiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 94 WITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence 45578889999999988899999999999888643 2223444333445677765532211111 111
Q ss_pred ccccceEEEEEEECCCCCeEEEEeCCCeEEEEECC----CC----ceeccccccccccceeeeecCC-CCccccEEEEEE
Q 015438 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG----SG----TMESLANVTEIHDGLDFSAADD-GGYSFGIFSLKF 235 (407)
Q Consensus 165 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~----~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~ 235 (407)
.......|+++....+|+.+++| .|| .+|.+. .+ .+..+.........+....... +.+..+|..+..
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI 250 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence 11224468999977788877665 455 344432 11 1111111010000000000011 356678999999
Q ss_pred eCCCCEEEEeeCCCeEEEEEcCC
Q 015438 236 STDGRELVAGSSDDCIYVYDLEA 258 (407)
Q Consensus 236 s~~~~~l~~~~~dg~i~i~d~~~ 258 (407)
......+++-+..|+|.+||+..
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccceeeeeccCceEEEEEccC
Confidence 98888999999999999999976
No 464
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.37 E-value=13 Score=33.47 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=33.2
Q ss_pred CCCEEEEeeC-----CCeEEEEEcCCCeee--eeeeccCCCeEEEEecCCCCCEEEEEeCCC----cEEEEeCc
Q 015438 238 DGRELVAGSS-----DDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGSDDN----LCKVWDRR 300 (407)
Q Consensus 238 ~~~~l~~~~~-----dg~i~i~d~~~~~~~--~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~----~i~vwd~~ 300 (407)
++++.+.|+. ...+..||+.+.+-. ..+... ......+.. .++++.+.|+.++ .+.+||..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVK-LQNELYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEE-ECCEEEEEcCCCCccccceEEEecC
Confidence 4666666664 246889998866432 222111 111222222 3567888887664 35678876
No 465
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.13 E-value=15 Score=33.56 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=15.1
Q ss_pred CCCEEEEEeCC-----------CeEEEEEcCCC
Q 015438 135 DGSLFVAGFQA-----------SQIRIYDVERG 156 (407)
Q Consensus 135 ~~~~l~~~~~d-----------g~i~iwd~~~~ 156 (407)
+++..+.|+.+ ..+..||..+.
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 56777777753 24778888775
No 466
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.03 E-value=12 Score=32.61 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=93.9
Q ss_pred EEEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCe
Q 015438 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (407)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 250 (407)
-+.++.++ +++...+..+.-++|.|+.+............ .+--. .|.-.|++..++..|.-
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt--------------~gyay--gv~vsGn~aYVadlddg 149 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT--------------DGYAY--GVYVSGNYAYVADLDDG 149 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC--------------CceEE--EEEecCCEEEEeeccCc
Confidence 36667775 45666777777899999987654333221110 01122 33446888888885656
Q ss_pred EEEEEcCCCe---eeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCC
Q 015438 251 IYVYDLEANK---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (407)
Q Consensus 251 i~i~d~~~~~---~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 327 (407)
..+.|+.+.+ .........+.-..++.| |++-..+..|+-+.+-|+..+. +...+... .....+.++..+++
T Consensus 150 fLivdvsdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~-sPvli~~~-n~g~g~~sv~vsdn 224 (370)
T COG5276 150 FLIVDVSDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPH-SPVLIGSY-NTGPGTYSVSVSDN 224 (370)
T ss_pred EEEEECCCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCC-CCeEEEEE-ecCCceEEEEecCC
Confidence 7888887643 333344444555677776 7788888899999999997432 22222222 12236788888777
Q ss_pred CCEEEEEeCCCcEEEEECCCCCC
Q 015438 328 GRYLISNGKDQAIKLWDIRKMSS 350 (407)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~~~~ 350 (407)
--+++..+ --+.+-|....+.
T Consensus 225 r~y~vvy~--egvlivd~s~~ss 245 (370)
T COG5276 225 RAYLVVYD--EGVLIVDVSGPSS 245 (370)
T ss_pred eeEEEEcc--cceEEEecCCCCC
Confidence 66655443 3466666666553
No 467
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.01 E-value=3 Score=33.70 Aligned_cols=32 Identities=9% Similarity=0.016 Sum_probs=26.2
Q ss_pred CCeEEEEecCCC------CEEEEEeCCCcEEEEECCCC
Q 015438 317 EGITFIDSRGDG------RYLISNGKDQAIKLWDIRKM 348 (407)
Q Consensus 317 ~~i~~~~~s~~~------~~l~s~~~dg~i~iwd~~~~ 348 (407)
..|.+++|||.| -+|++.+.++.|.||.-...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 378999999954 37888999999999997653
No 468
>PRK13684 Ycf48-like protein; Provisional
Probab=89.31 E-value=17 Score=33.07 Aligned_cols=109 Identities=9% Similarity=0.071 Sum_probs=59.6
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEE-EeCcccCCCCceee-eeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 015438 269 TSDVNTVCFGDESGHLIYSGSDDNLCKV-WDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (407)
Q Consensus 269 ~~~v~~i~~s~~~~~~l~s~~~d~~i~v-wd~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~ 346 (407)
.+.+.++.+. +++.+++++ ..|.+.. +|- .++.-. ....-...++++.+.++++.++.+ ..|.+++=..+
T Consensus 172 ~g~~~~i~~~-~~g~~v~~g-~~G~i~~s~~~-----gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRS-PDGKYVAVS-SRGNFYSTWEP-----GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEEC-CCCeEEEEe-CCceEEEEcCC-----CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence 4568889987 666665554 4554433 222 122111 122334578899999999877665 45765432233
Q ss_pred CCCCcccccCCCccccccceeeeCCCCCCccCCCCCcce
Q 015438 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 385 (407)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~v 385 (407)
.+..-...........+.+..+.+.+++++++++.++.+
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v 282 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTL 282 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeE
Confidence 322211111111112345667788888888888776644
No 469
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.27 E-value=2.7 Score=24.28 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=27.2
Q ss_pred CCCCEEEEee-CCCeEEEEEcCCCeeeeeeeccCCCeEEEEe
Q 015438 237 TDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (407)
Q Consensus 237 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 277 (407)
|+++.|+++. .++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5677666654 5789999999998888777653 23334444
No 470
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.25 E-value=24 Score=36.06 Aligned_cols=112 Identities=14% Similarity=0.166 Sum_probs=68.9
Q ss_pred CCEEEEeeCCCeEEEEEcCCCeeeeeeeccCCC--------eEEEEecC---------------CCCCEEEEEeCCCcEE
Q 015438 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSD--------VNTVCFGD---------------ESGHLIYSGSDDNLCK 295 (407)
Q Consensus 239 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------v~~i~~s~---------------~~~~~l~s~~~d~~i~ 295 (407)
+..+++++.++.|+-.|..+++.+-++...... ...+.+.. ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777788888999999988876555422110 11223321 1334777888999999
Q ss_pred EEeCcccCCCCceeeeeccccCCe-------------EEEEecC--CCCEEEEEeC----------CCcEEEEECCCCCC
Q 015438 296 VWDRRCLNVKGKPAGVLMGHLEGI-------------TFIDSRG--DGRYLISNGK----------DQAIKLWDIRKMSS 350 (407)
Q Consensus 296 vwd~~~~~~~~~~~~~~~~~~~~i-------------~~~~~s~--~~~~l~s~~~----------dg~i~iwd~~~~~~ 350 (407)
-.|.+ +++....+.. .+.| ..+.-.| .+..++.|+. +|.|+-+|+++++.
T Consensus 274 ALDA~----TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDAD----TGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECC----CCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 99988 7777765421 1111 0111122 1334555542 68899999999998
Q ss_pred ccccc
Q 015438 351 NASCN 355 (407)
Q Consensus 351 ~~~~~ 355 (407)
+-.+.
T Consensus 349 ~W~~~ 353 (764)
T TIGR03074 349 VWAWD 353 (764)
T ss_pred eeEEe
Confidence 77664
No 471
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.87 E-value=0.36 Score=47.88 Aligned_cols=158 Identities=19% Similarity=0.216 Sum_probs=85.5
Q ss_pred CCCceEEEEECC---CCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEE-----------ECCCCCeEEEEe
Q 015438 123 TTSRAYVSQFSA---DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS-----------LSPDQRHLVYAS 188 (407)
Q Consensus 123 h~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-----------~sp~~~~l~~~~ 188 (407)
....+.-+.|.| +.-++..+-.++.|++.+...... ....+|...++.++ +||||+.+++++
T Consensus 179 ~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~ 254 (1283)
T KOG1916|consen 179 YGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAI 254 (1283)
T ss_pred CCCCcceeeecccccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEee
Confidence 344445555554 566777777788888877655311 11222444344333 589999999999
Q ss_pred CCCeEEEEECC-CCceecc-ccccccccceeeeecCCCCccccEEEEEEeCC-------C--CEEEEee-CCCeEEEEEc
Q 015438 189 MSPIVHIVDVG-SGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-------G--RELVAGS-SDDCIYVYDL 256 (407)
Q Consensus 189 ~dg~i~vwd~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------~--~~l~~~~-~dg~i~i~d~ 256 (407)
.||.+..|-+. +++.... ....+.++ +| +-.|.-|+.+ + .++++++ .+..+++|..
T Consensus 255 ~dG~v~f~Qiyi~g~~~~rclhewkphd----------~~--p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 255 SDGSVGFYQIYITGKIVHRCLHEWKPHD----------KH--PRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred cCCccceeeeeeeccccHhhhhccCCCC----------CC--CceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 99999888764 2322211 11111111 11 1122223321 1 1334443 4567999998
Q ss_pred CCCeeeeeeeccCCCeEEEEecCCCCC------------EEEEEeCCCcEEEEeCc
Q 015438 257 EANKLSLRILAHTSDVNTVCFGDESGH------------LIYSGSDDNLCKVWDRR 300 (407)
Q Consensus 257 ~~~~~~~~~~~~~~~v~~i~~s~~~~~------------~l~s~~~d~~i~vwd~~ 300 (407)
...+|+. ......|..+. |+++. .++..+.++.|.+|--+
T Consensus 323 a~w~Cll--~~~~d~v~iV~--p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 323 APWQCLL--DKLIDGVQIVG--PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred cchhhhh--hhcccceEeec--CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 8877762 22233344443 34433 23345678889999765
No 472
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.71 E-value=17 Score=34.37 Aligned_cols=57 Identities=16% Similarity=0.157 Sum_probs=37.3
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEe--e-e-ccccceEEEEEEECCCC
Q 015438 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD--I-L-AKSLRWTVTDTSLSPDQ 181 (407)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~-~-~~~~~~~v~~~~~sp~~ 181 (407)
...+.|+|.|+|++|++--..|.|++++..++...... . . ..........|+++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 45679999999988877644699999986654321111 0 0 11124458999999874
No 473
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.66 E-value=9 Score=29.16 Aligned_cols=115 Identities=13% Similarity=0.159 Sum_probs=66.4
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEe----EeeeccccceEEEEEEECC-----CCCeEEEEeCCCeEEEEEC
Q 015438 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ----KDILAKSLRWTVTDTSLSP-----DQRHLVYASMSPIVHIVDV 198 (407)
Q Consensus 128 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~~dg~i~vwd~ 198 (407)
..-+|......|++++..|.|.|++........ .....-.....|++++-.+ +...|+.|+. ..|..||+
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 345677777789999999999999876432111 0111111223466665433 3446666654 56889999
Q ss_pred CCCceeccccccccccceeeeecCCCCccccEEEEEEeC----CCCEEEEeeCCCeEEEEEcCCCee
Q 015438 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST----DGRELVAGSSDDCIYVYDLEANKL 261 (407)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~i~d~~~~~~ 261 (407)
....-.-...+. ..|+++.+-. ...++++| .+..|.-||....+.
T Consensus 81 ~~N~d~Fyke~~-----------------DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 81 ENNSDLFYKEVP-----------------DGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEI 129 (136)
T ss_pred ccCchhhhhhCc-----------------cceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEE
Confidence 877543333222 2566666643 23345555 455788888765444
No 474
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.34 E-value=20 Score=32.88 Aligned_cols=196 Identities=15% Similarity=0.199 Sum_probs=104.9
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEEC----CCCCe--EEEEe-CC---CeEEEEECCC--C
Q 015438 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS----PDQRH--LVYAS-MS---PIVHIVDVGS--G 201 (407)
Q Consensus 134 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s----p~~~~--l~~~~-~d---g~i~vwd~~~--~ 201 (407)
|...+++....++-+.+||++.. .+.... .+ .++.+..- -.++. |++++ .+ ..|++|.+.. +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~--~G---r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLP--VG---RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE---SS----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeec--CC---CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 45678888888999999999754 444321 11 22222221 13333 44443 32 4799998753 3
Q ss_pred ceeccccccccccceeeeecCCCCccccEEEEEEe--C-CCC-EEEEeeCCCeEEEEEcC---CC----eeeeeeeccCC
Q 015438 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--T-DGR-ELVAGSSDDCIYVYDLE---AN----KLSLRILAHTS 270 (407)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~-~~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~ 270 (407)
....+..... .+.. ....+..+|+- + +|. ++++...+|.+..|-+. .+ +.++.|.. .+
T Consensus 140 ~L~~v~~~~~-----p~~~-----~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~s 208 (381)
T PF02333_consen 140 ELTDVTDPAA-----PIAT-----DLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GS 208 (381)
T ss_dssp EEEE-CBTTC------EE------SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS
T ss_pred cceEcCCCCc-----cccc-----ccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CC
Confidence 2211111000 0000 11135666663 3 454 66677888988888774 22 35666754 45
Q ss_pred CeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCC-CCceeeeecc--ccCCeEEEEec--CCC-CEEEEEe-CCCcEEEE
Q 015438 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV-KGKPAGVLMG--HLEGITFIDSR--GDG-RYLISNG-KDQAIKLW 343 (407)
Q Consensus 271 ~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~--~~~~i~~~~~s--~~~-~~l~s~~-~dg~i~iw 343 (407)
.+..+... .....|+.+-.+.-|.-|+...... .+..+....+ ....|-.|++- .++ .||+.++ .+++..||
T Consensus 209 Q~EGCVVD-De~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy 287 (381)
T PF02333_consen 209 QPEGCVVD-DETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVY 287 (381)
T ss_dssp -EEEEEEE-TTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEE
T ss_pred cceEEEEe-cccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEE
Confidence 78888885 6666888898888888888763211 2233322222 34567777763 343 3555555 67889999
Q ss_pred ECCC
Q 015438 344 DIRK 347 (407)
Q Consensus 344 d~~~ 347 (407)
|.+.
T Consensus 288 ~r~~ 291 (381)
T PF02333_consen 288 DREG 291 (381)
T ss_dssp ESST
T ss_pred ecCC
Confidence 9875
No 475
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.07 E-value=9.9 Score=32.56 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=66.3
Q ss_pred EECCCCCEEEEEeC-C--CeEEEEEcCC----CeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCC-eEEEEECCCC-
Q 015438 131 QFSADGSLFVAGFQ-A--SQIRIYDVER----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-IVHIVDVGSG- 201 (407)
Q Consensus 131 ~~s~~~~~l~~~~~-d--g~i~iwd~~~----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-~i~vwd~~~~- 201 (407)
.+-+||++|.+|+. + ..+++++... .............++.- +...-|||+.|+.|+... +..+|.-...
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp-T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~ 151 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP-TATTLPDGRVLIVGGSNNPTYEFWPPKGPG 151 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccc-cceECCCCCEEEEeCcCCCcccccCCccCC
Confidence 57789999998875 2 3588888654 11111111122223323 333457999999988763 3334433211
Q ss_pred -ceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccC
Q 015438 202 -TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (407)
Q Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 269 (407)
.......+..... .....----+...|+|++|+.+..+. .|||..+.+.++.+..-.
T Consensus 152 ~~~~~~~~l~~~~~---------~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~lP 209 (243)
T PF07250_consen 152 PGPVTLPFLSQTSD---------TLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPDLP 209 (243)
T ss_pred CCceeeecchhhhc---------cCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCCCC
Confidence 1111000000000 00001122366789999998887654 677988887766665433
No 476
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.99 E-value=4.2 Score=32.83 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=25.0
Q ss_pred cEEEEEEeCCC------CEEEEeeCCCeEEEEEcCC
Q 015438 229 GIFSLKFSTDG------RELVAGSSDDCIYVYDLEA 258 (407)
Q Consensus 229 ~v~~~~~s~~~------~~l~~~~~dg~i~i~d~~~ 258 (407)
.|..++|||.| -+|++.+.++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999954 3788899999999998763
No 477
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.86 E-value=21 Score=32.35 Aligned_cols=168 Identities=15% Similarity=0.246 Sum_probs=89.3
Q ss_pred EEEEEEECCCCCeEEEEeCCCe------EEEEECCCC--cee--ccccccccc--cceeeeecCCCCccccEEEEEEeCC
Q 015438 171 TVTDTSLSPDQRHLVYASMSPI------VHIVDVGSG--TME--SLANVTEIH--DGLDFSAADDGGYSFGIFSLKFSTD 238 (407)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~dg~------i~vwd~~~~--~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~ 238 (407)
.+..+.+.|++..+++.+.+|. +..+++... ... ......... .+..+ .......-+|++.++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~-----~~~~~D~Egi~~~~~ 95 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPF-----PKNGLDPEGIAVPPD 95 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcC-----CcCCCChhHeEEecC
Confidence 4788899866666666677776 666655431 110 000000000 00000 001113456788778
Q ss_pred CCEEEEeeCC------CeEEEEEcCCCeeeeeee---------------ccCCCeEEEEecCCCCCEEEEEeC-----CC
Q 015438 239 GRELVAGSSD------DCIYVYDLEANKLSLRIL---------------AHTSDVNTVCFGDESGHLIYSGSD-----DN 292 (407)
Q Consensus 239 ~~~l~~~~~d------g~i~i~d~~~~~~~~~~~---------------~~~~~v~~i~~s~~~~~~l~s~~~-----d~ 292 (407)
|.++++.-.+ ..|+.++.. ++.+..+. .......+++++ ++++.|+++.. |+
T Consensus 96 g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~-~dG~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 96 GSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVS-PDGRTLFAAMESPLKQDG 173 (326)
T ss_pred CCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEEC-CCCCEEEEEECccccCCC
Confidence 8777766566 688888876 65544331 134567899998 77875555532 22
Q ss_pred --c-------EEEEeCcccCCCCce----eeeecc-----ccCCeEEEEecCCCCEEEEEe-----CCCcEEEEECC
Q 015438 293 --L-------CKVWDRRCLNVKGKP----AGVLMG-----HLEGITFIDSRGDGRYLISNG-----KDQAIKLWDIR 346 (407)
Q Consensus 293 --~-------i~vwd~~~~~~~~~~----~~~~~~-----~~~~i~~~~~s~~~~~l~s~~-----~dg~i~iwd~~ 346 (407)
. ++++...... .+.+ ...+.. ....|+.+.+-+++++|+.=- ....++|+-+.
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~-~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKT-PGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccccccCceEEEEEecCCC-CCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 1 5555443110 1212 222222 345788999999998777422 23445555443
No 478
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=87.73 E-value=31 Score=34.21 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCC------eEEEEeC-CC---eE
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR------HLVYASM-SP---IV 193 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~------~l~~~~~-dg---~i 193 (407)
.+.|-++.|.++++.+++...+|.|.+||...+...........+...+.--.|-++.. ++++.+. ++ ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Q ss_pred EEEEC--CCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeecc---
Q 015438 194 HIVDV--GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH--- 268 (407)
Q Consensus 194 ~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--- 268 (407)
+++.+ +......+..... +........|..+...|+.= .+++|.+|++...+...++.-.
T Consensus 209 kL~~l~~~~~~~~El~s~~~--------------e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii 273 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTIL--------------ENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSII 273 (670)
T ss_pred EEEEeccCCcceEEeehhee--------------ccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhh
Q ss_pred CCC-eEEEEecCCCCCEEEEEeCCCcEEEEeC
Q 015438 269 TSD-VNTVCFGDESGHLIYSGSDDNLCKVWDR 299 (407)
Q Consensus 269 ~~~-v~~i~~s~~~~~~l~s~~~d~~i~vwd~ 299 (407)
... -..+.+.|++.+.++.+..+ .|.+.|+
T Consensus 274 ~~~~~~~vSl~~~s~nRvLLs~~n-kIyLld~ 304 (670)
T PF10395_consen 274 DKESDDLVSLKPPSPNRVLLSVNN-KIYLLDL 304 (670)
T ss_pred ccccccceEeecCCCCeEEEEcCC-EEEEEee
No 479
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.82 E-value=3.3 Score=40.54 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=44.5
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC----CeEEeEeeecc-------------------ccceEEEEEEECC----CCCeEEE
Q 015438 134 ADGSLFVAGFQASQIRIYDVER----GWKIQKDILAK-------------------SLRWTVTDTSLSP----DQRHLVY 186 (407)
Q Consensus 134 ~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~-------------------~~~~~v~~~~~sp----~~~~l~~ 186 (407)
++...++.+..||.+....... +.......... .....+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888999988887664 21111111000 1123455666666 7788999
Q ss_pred EeCCCeEEEEECCCCceeccc
Q 015438 187 ASMSPIVHIVDVGSGTMESLA 207 (407)
Q Consensus 187 ~~~dg~i~vwd~~~~~~~~~~ 207 (407)
.+.|+++++||+.++.+....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999885443
No 480
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.70 E-value=20 Score=31.05 Aligned_cols=202 Identities=13% Similarity=0.048 Sum_probs=119.4
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCeEEEEECCCCce
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~ 203 (407)
.+.-..++-+|||..-+++...+.|--.|..+|+.....+. .......+..-||+...++-+.. -|.-.|-++.+.
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg---~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLG---SGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecC---CCCCCceEEECCCCCeeEecCcc-eeEEecCcccce
Confidence 34566788899999888888888888889888854443222 22235566777888776664333 444455544443
Q ss_pred eccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeec-cCCCeEEEEecCCCC
Q 015438 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESG 282 (407)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~i~~s~~~~ 282 (407)
.... +.. ..-........|.+.|++-+++. .|.-=-.|..++ .+..+.. ....-+.|+.. ++|
T Consensus 137 t~f~-lp~------------~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~~-~i~vfpaPqG~gpyGi~at-pdG 200 (353)
T COG4257 137 TRFP-LPL------------EHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPARN-VISVFPAPQGGGPYGICAT-PDG 200 (353)
T ss_pred EEee-ccc------------ccCCCcccceeeCCCccEEEeec-cccceecCcccC-ceeeeccCCCCCCcceEEC-CCC
Confidence 2211 110 11223567788999999888875 232112222211 2222222 22345678887 788
Q ss_pred CEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 015438 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 283 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 347 (407)
...++.-.++.|-..|.... ..+.+..-.+....-..+--+|.|+.-+|-...+.+..+|-..
T Consensus 201 svwyaslagnaiaridp~~~--~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 201 SVWYASLAGNAIARIDPFAG--HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred cEEEEeccccceEEcccccC--CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 88888777788888887521 1122222222233345555678888888877778888887655
No 481
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.07 E-value=4.3 Score=23.08 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=19.6
Q ss_pred ccCCeEEEEecCCCCEEEEEe-CC--CcEEEE
Q 015438 315 HLEGITFIDSRGDGRYLISNG-KD--QAIKLW 343 (407)
Q Consensus 315 ~~~~i~~~~~s~~~~~l~s~~-~d--g~i~iw 343 (407)
....-....|+|||++|+-++ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567889999999887665 44 566555
No 482
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=85.88 E-value=41 Score=33.83 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=23.4
Q ss_pred cEEEEEEeCCCCEEEEeeCCCeEEEEEc
Q 015438 229 GIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (407)
Q Consensus 229 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 256 (407)
.|...+||.|.+.++....+..|.+++-
T Consensus 114 GIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 114 GIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred ceEEEeeccCCceEEEEEcCceEEEEec
Confidence 6888999999998888778888888763
No 483
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.72 E-value=4.4 Score=39.72 Aligned_cols=87 Identities=23% Similarity=0.179 Sum_probs=44.9
Q ss_pred CCCCeEEEEeCCCeEEEEECCCCc----eecccccccc-----ccce-eeeecCCCCccccEEEEEEeC----CCCEEEE
Q 015438 179 PDQRHLVYASMSPIVHIVDVGSGT----MESLANVTEI-----HDGL-DFSAADDGGYSFGIFSLKFST----DGRELVA 244 (407)
Q Consensus 179 p~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~v~~~~~s~----~~~~l~~ 244 (407)
++...++.+..||.+......... .......... ..++ .............+..++++. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 467788888899988888766411 1000000000 0000 000000111223455556655 6679999
Q ss_pred eeCCCeEEEEEcCCCeeeeee
Q 015438 245 GSSDDCIYVYDLEANKLSLRI 265 (407)
Q Consensus 245 ~~~dg~i~i~d~~~~~~~~~~ 265 (407)
.+.|+++++||+.+++++..+
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986654
No 484
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.64 E-value=3 Score=38.43 Aligned_cols=170 Identities=14% Similarity=0.037 Sum_probs=95.2
Q ss_pred CCCcccccCCCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccc-cc---eEEE-EEEECCCCCeEEEEeC
Q 015438 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LR---WTVT-DTSLSPDQRHLVYASM 189 (407)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~---~~v~-~~~~sp~~~~l~~~~~ 189 (407)
+....+.....+|..+-..|||+.+..-+. ..+.|+++.+...... ..... .. ..|+ .+..-..+..+.++..
T Consensus 211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 333445566788889999999999887655 7899999876421111 11111 11 1122 1222234667888888
Q ss_pred CCeEEEE-ECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeecc
Q 015438 190 SPIVHIV-DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (407)
Q Consensus 190 dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 268 (407)
||-|.-| |+..+.. ..++... .+.. ...++.-+.-..+.+-+++-..+|++.++.....+.+..-..
T Consensus 289 dG~vsQWFdvr~~~~-p~l~h~R-----~f~l-----~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~- 356 (733)
T COG4590 289 DGLVSQWFDVRRDGQ-PHLNHIR-----NFKL-----APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA- 356 (733)
T ss_pred CCceeeeeeeecCCC-Ccceeee-----cccc-----CcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-
Confidence 9988777 4433221 1111110 0000 001233333333445677778888888887655444332222
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEeCc
Q 015438 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (407)
Q Consensus 269 ~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~ 300 (407)
-..+.-+++| +.++++++- ..|.|+++.+.
T Consensus 357 ~~~~~~~~~S-p~~~~Ll~e-~~gki~~~~l~ 386 (733)
T COG4590 357 YQAPQLVAMS-PNQAYLLSE-DQGKIRLAQLE 386 (733)
T ss_pred hcCcceeeeC-cccchheee-cCCceEEEEec
Confidence 2356678898 667777553 56789999887
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.37 E-value=25 Score=30.92 Aligned_cols=100 Identities=16% Similarity=0.200 Sum_probs=62.5
Q ss_pred CCeEEEEEcCCCeeeeeeeccCCCeEEEEecCCCCCEEEEEe------CCCcEEEEeCcccCCCCceeeeecc-----cc
Q 015438 248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS------DDNLCKVWDRRCLNVKGKPAGVLMG-----HL 316 (407)
Q Consensus 248 dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~~-----~~ 316 (407)
...|++||..+.+-...-..-.+.|+++.|. .+.++++.|. ....+-.||.. . .....+.+ -.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~-~~~~Llv~G~ft~~~~~~~~la~yd~~----~-~~w~~~~~~~s~~ip 88 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWA-SNNQLLVGGNFTLNGTNSSNLATYDFK----N-QTWSSLGGGSSNSIP 88 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEe-cCCEEEEEEeeEECCCCceeEEEEecC----C-CeeeecCCcccccCC
Confidence 4469999988776544444456789999996 5666776664 34578889985 2 22323332 24
Q ss_pred CCeEEEEecC-CCC-EEEEEe-C--CCcEEEEECCCCCCccc
Q 015438 317 EGITFIDSRG-DGR-YLISNG-K--DQAIKLWDIRKMSSNAS 353 (407)
Q Consensus 317 ~~i~~~~~s~-~~~-~l~s~~-~--dg~i~iwd~~~~~~~~~ 353 (407)
++|+.+.+.. |+. +.++|. . +..|..||=.+...+..
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred CcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence 6788887733 343 444443 2 34588888777665554
No 486
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=85.18 E-value=32 Score=31.87 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=14.5
Q ss_pred CCCEEEEEeCC-----------CeEEEEEcCCC
Q 015438 135 DGSLFVAGFQA-----------SQIRIYDVERG 156 (407)
Q Consensus 135 ~~~~l~~~~~d-----------g~i~iwd~~~~ 156 (407)
++..++.|+.. ..+..||..+.
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 56677777653 24778888765
No 487
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=84.00 E-value=46 Score=32.80 Aligned_cols=206 Identities=12% Similarity=0.076 Sum_probs=108.2
Q ss_pred CceEEEEECCCCCEEEEEeC-----CCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCCCe---EEEE
Q 015438 125 SRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---VHIV 196 (407)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~---i~vw 196 (407)
..+-.++.|||.+++|-+-. .=.+++.|+.++..+...+ ......++|.+|++.|.....+.. =++|
T Consensus 129 ~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i-----~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~ 203 (682)
T COG1770 129 FSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI-----TNTSGSFAWAADGKTLFYTRLDENHRPDKVW 203 (682)
T ss_pred eeeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh-----cccccceEEecCCCeEEEEEEcCCCCcceEE
Confidence 35667889999999886532 3368999999885443322 223667899999988877654432 2233
Q ss_pred E--CCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC---CeEEEEEcCCCeee--eeeeccC
Q 015438 197 D--VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLS--LRILAHT 269 (407)
Q Consensus 197 d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~--~~~~~~~ 269 (407)
. +.+.......-.... ...-..++.-+.+.++|+....+ +.+++.+....... .......
T Consensus 204 ~h~~gt~~~~d~lvyeE~-------------d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~ 270 (682)
T COG1770 204 RHRLGTPGSSDELVYEEK-------------DDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPREN 270 (682)
T ss_pred EEecCCCCCcceEEEEcC-------------CCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCC
Confidence 2 222111100000000 01122334445566676665433 46888887765432 2222222
Q ss_pred CCeEEEEecCCCCCEEEEEeCCC-cEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCC-C--cEEEEEC
Q 015438 270 SDVNTVCFGDESGHLIYSGSDDN-LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-Q--AIKLWDI 345 (407)
Q Consensus 270 ~~v~~i~~s~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-g--~i~iwd~ 345 (407)
+--..+.- ....+++-...+| ..+++-... ......-..+..|...+.--.|+--..+|+..-.+ + .|++++.
T Consensus 271 g~eY~~eh--~~d~f~i~sN~~gknf~l~~ap~-~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~ 347 (682)
T COG1770 271 GVEYSVEH--GGDRFYILSNADGKNFKLVRAPV-SADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDR 347 (682)
T ss_pred CcEEeeee--cCcEEEEEecCCCcceEEEEccC-CCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEec
Confidence 22222322 2223333444444 566665542 11223334566687777666666666667665543 3 4778888
Q ss_pred CCCCCc
Q 015438 346 RKMSSN 351 (407)
Q Consensus 346 ~~~~~~ 351 (407)
.+++..
T Consensus 348 ~~~~~~ 353 (682)
T COG1770 348 KTGEER 353 (682)
T ss_pred CCCcee
Confidence 765543
No 488
>PLN02153 epithiospecifier protein
Probab=83.70 E-value=34 Score=31.09 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=35.1
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCeEEeEeeecc----ccceEEEEEEECCCCCeEEEEeCC-----------CeEE
Q 015438 135 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAK----SLRWTVTDTSLSPDQRHLVYASMS-----------PIVH 194 (407)
Q Consensus 135 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d-----------g~i~ 194 (407)
++++++.|+.+ ..+.+||+.+..-.. ..... .....-.+++ .-++++.+.|+.+ ..+.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTF-LTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEE-eccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEE
Confidence 45667777653 357889987653221 11110 0001111222 2356677777643 2477
Q ss_pred EEECCCCceec
Q 015438 195 IVDVGSGTMES 205 (407)
Q Consensus 195 vwd~~~~~~~~ 205 (407)
+||..+.+...
T Consensus 163 ~yd~~~~~W~~ 173 (341)
T PLN02153 163 AYNIADGKWVQ 173 (341)
T ss_pred EEECCCCeEee
Confidence 88887766543
No 489
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.68 E-value=29 Score=30.18 Aligned_cols=194 Identities=13% Similarity=0.066 Sum_probs=112.9
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeCC---------CeEE
Q 015438 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---------PIVH 194 (407)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---------g~i~ 194 (407)
...-..|..-|||..-++-+.. -|.-.|.++.....-...............|.+.|++.+++... +.|+
T Consensus 103 Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~ 181 (353)
T COG4257 103 GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVIS 181 (353)
T ss_pred CCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCcee
Confidence 3445566777777665543332 45555555543222222233334557778899999888886521 2344
Q ss_pred EEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCC--Ce
Q 015438 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS--DV 272 (407)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v 272 (407)
+|+.-.+ ..-+.|+..|+|..-++.-.+..|-..|..++.. ..+...+. .-
T Consensus 182 vfpaPqG--------------------------~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~g 234 (353)
T COG4257 182 VFPAPQG--------------------------GGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAG 234 (353)
T ss_pred eeccCCC--------------------------CCCcceEECCCCcEEEEeccccceEEcccccCCc-ceecCCCccccc
Confidence 4444322 1456688999999888777777888888777632 22221111 11
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCceeeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 015438 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (407)
Q Consensus 273 ~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 348 (407)
..-.|+++-+..-++....+.+..||... ..-....+.+....-.++-....++.-.+--.-|.|.-+|-++.
T Consensus 235 sRriwsdpig~~wittwg~g~l~rfdPs~---~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 235 SRRIWSDPIGRAWITTWGTGSLHRFDPSV---TSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred ccccccCccCcEEEeccCCceeeEeCccc---ccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence 22345567888888887888899888752 11122233344444556666666666555555667777776654
No 490
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=83.34 E-value=25 Score=31.19 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=50.3
Q ss_pred CCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC-----------
Q 015438 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----------- 248 (407)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------- 248 (407)
++++.+.-+..|.+..+|.++++...+..... ....+.|. |.++++|...
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG-----------------~~rGL~f~--G~llvVgmSk~R~~~~f~glp 272 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPG-----------------FTRGLAFA--GDFAFVGLSKLRESRVFGGLP 272 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCC-----------------CCccccee--CCEEEEEeccccCCCCcCCCc
Confidence 67777787888999999988887766655443 34556676 6666665321
Q ss_pred ---------CeEEEEEcCCCeeeeeee--ccCCCeEEEEecC
Q 015438 249 ---------DCIYVYDLEANKLSLRIL--AHTSDVNTVCFGD 279 (407)
Q Consensus 249 ---------g~i~i~d~~~~~~~~~~~--~~~~~v~~i~~s~ 279 (407)
.-|.+.|++++..+..++ +--..+.++++-|
T Consensus 273 l~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLP 314 (335)
T TIGR03032 273 IEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLP 314 (335)
T ss_pred hhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEec
Confidence 126666777776655443 2233455555553
No 491
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.00 E-value=46 Score=32.02 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=64.5
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCeEEeEeeeccccceEEEEEEECCCCCeEEEEeC-------------CCeEEEE
Q 015438 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-------------SPIVHIV 196 (407)
Q Consensus 130 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------------dg~i~vw 196 (407)
+...++|.+++... ..+..+|+. |+.+...........-=.++..-|+|++|+.+.. ...|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66778998887554 788888886 4333332222210000124567789999888772 1246666
Q ss_pred ECCCCceeccccccccccceee-----------eecCCCCccccEEEEEEeC-CCCEEEEeeCCCeEEEEEcCCCeeeee
Q 015438 197 DVGSGTMESLANVTEIHDGLDF-----------SAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLR 264 (407)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~ 264 (407)
| .+++...........+.... ........-.-++++.+.+ ++.+|+++-.-..|...|.++++..-.
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 6 67766554444333211111 0001111223478999999 555555555555899999888877655
Q ss_pred ee
Q 015438 265 IL 266 (407)
Q Consensus 265 ~~ 266 (407)
+-
T Consensus 309 lg 310 (477)
T PF05935_consen 309 LG 310 (477)
T ss_dssp ES
T ss_pred eC
Confidence 53
No 492
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.33 E-value=4.9 Score=22.84 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=19.5
Q ss_pred CCCceEEEEECCCCCEEEEEeC-C--CeEEEE
Q 015438 123 TTSRAYVSQFSADGSLFVAGFQ-A--SQIRIY 151 (407)
Q Consensus 123 h~~~v~~~~~s~~~~~l~~~~~-d--g~i~iw 151 (407)
..+.-....|||||+.|+.++. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456778899999998886654 4 555554
No 493
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=82.26 E-value=36 Score=30.33 Aligned_cols=72 Identities=21% Similarity=0.380 Sum_probs=51.9
Q ss_pred ccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCC-C----eEEEEecCCCCCEEEEEeCCCcEEEEeCc
Q 015438 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-D----VNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (407)
Q Consensus 228 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~----v~~i~~s~~~~~~l~s~~~d~~i~vwd~~ 300 (407)
.-++++...++|.+|++.-.-..|.+.|-++++.+-.+.+... . -...++ ..+-+++-.+..++.|.++|=.
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~-QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSW-QHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEee-ccCCEEeccCCCCCEEEEEcCC
Confidence 3478888889999999998889999999999998888755412 1 112344 2444555455678899999863
No 494
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=80.86 E-value=40 Score=29.86 Aligned_cols=181 Identities=14% Similarity=0.137 Sum_probs=92.5
Q ss_pred EEEEeCCCeEEEEEcCCCeE---EeEeeeccccceE-EEEEEECC--CCCeEEEE-eCCCeEEEEECCCCceecc--ccc
Q 015438 139 FVAGFQASQIRIYDVERGWK---IQKDILAKSLRWT-VTDTSLSP--DQRHLVYA-SMSPIVHIVDVGSGTMESL--ANV 209 (407)
Q Consensus 139 l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~-v~~~~~sp--~~~~l~~~-~~dg~i~vwd~~~~~~~~~--~~~ 209 (407)
++.+++||+|.-|...-+.. ............. -..+++.. .+.+|..+ -.+++|.|+|-.-.....- +.-
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 67788999999998643321 1111111111122 23455543 35555554 4678898887653322100 000
Q ss_pred cccccce-eeeecCCCCccccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeeeeccCC---CeEEEEecC-----C
Q 015438 210 TEIHDGL-DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS---DVNTVCFGD-----E 280 (407)
Q Consensus 210 ~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~v~~i~~s~-----~ 280 (407)
.....+. .|..-. -+..--|+-..-.++.+.=+.|..-|.|-+||+. ++.++++. +.+ ..+.|+..| .
T Consensus 183 P~iPagyAPFnIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~a-s~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 183 PALPAGYAPFNVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVA-SSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCcceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEec-cCCcccCCceeeeChhhhCCC
Confidence 0000000 000000 0011112222223333333445556789999986 77777663 332 334565543 4
Q ss_pred CCCEEEEEeCCCcEEEEeCcccCCCCceeeeecccc------CCeEEEEecC
Q 015438 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL------EGITFIDSRG 326 (407)
Q Consensus 281 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~------~~i~~~~~s~ 326 (407)
.+.+|+---.||+|..||.. ++..+..+.... ...+.|+|-.
T Consensus 260 sg~lLVGNFGDG~InaFD~~----sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQ----SGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCC----CCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 57777777789999999987 666666655432 3467788754
No 495
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=80.71 E-value=31 Score=29.60 Aligned_cols=139 Identities=15% Similarity=0.172 Sum_probs=72.7
Q ss_pred EEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCCCEEEEeeCC---CeEEEEEcCC----Ceee---
Q 015438 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEA----NKLS--- 262 (407)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~----~~~~--- 262 (407)
-.+||+.+++.......... .+.+-.+-+||++|.+|+.. ..+++++... ....
T Consensus 48 s~~yD~~tn~~rpl~v~td~----------------FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~ 111 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDT----------------FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESP 111 (243)
T ss_pred EEEEecCCCcEEeccCCCCC----------------cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECc
Confidence 45899988876443221110 23334577899999988752 3478887654 1111
Q ss_pred eeeeccCCCeEEEEecCCCCCEEEEEeCCC-cEEEEeCcccCCCCceeeeecc----c-cCCeEEEEecCCCCEEEEEeC
Q 015438 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDN-LCKVWDRRCLNVKGKPAGVLMG----H-LEGITFIDSRGDGRYLISNGK 336 (407)
Q Consensus 263 ~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~----~-~~~i~~~~~s~~~~~l~s~~~ 336 (407)
..+....-.-+.... ++|+.|+.|+... ..-+|..+........+..+.. . ..---.+-..|+|+.|+.+..
T Consensus 112 ~~m~~~RWYpT~~~L--~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 112 NDMQSGRWYPTATTL--PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred ccccCCCccccceEC--CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC
Confidence 112222222333344 6888888888764 3455554211001111111111 0 011124556899999998886
Q ss_pred CCcEEEEECCCCCCc
Q 015438 337 DQAIKLWDIRKMSSN 351 (407)
Q Consensus 337 dg~i~iwd~~~~~~~ 351 (407)
+ -.|||..+.+.+
T Consensus 190 ~--s~i~d~~~n~v~ 202 (243)
T PF07250_consen 190 G--SIIYDYKTNTVV 202 (243)
T ss_pred C--cEEEeCCCCeEE
Confidence 5 456687776543
No 496
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.57 E-value=62 Score=30.76 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=36.7
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEECCCCceeccccccccccceeeeecCCCCccccEEEEEEeCCC
Q 015438 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (407)
Q Consensus 172 v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 239 (407)
.+.|+|.||+++|++--..|.|++++..++.......+.... ..........|+++|+-
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~---------~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIV---------NDAQHNGLLGLALHPDF 90 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCcee---------ccCCCCceeeEEECCCc
Confidence 678999999987777655699999986554332222111110 00013468889999874
No 497
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=78.50 E-value=49 Score=29.54 Aligned_cols=104 Identities=11% Similarity=0.108 Sum_probs=0.0
Q ss_pred CCCEEEEeeCCCeEEEEEcCCC-eeeeeeeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEeCcccCCCCce--------
Q 015438 238 DGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP-------- 308 (407)
Q Consensus 238 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~s~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-------- 308 (407)
++++|+.|+++| +++.++... .....+ .+...|+++...+..+-+++.++....++++++. .-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl-~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~----~L~~~~~~~~~~ 85 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKL-IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS----ALVEKKEALGSA 85 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEe-cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH----HhhhhhhccCCc
Q ss_pred --------eeeeccccCCeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 015438 309 --------AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (407)
Q Consensus 309 --------~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 347 (407)
...+..-.+......-......++.+....+|.++....
T Consensus 86 ~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~ 132 (302)
T smart00036 86 RLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYN 132 (302)
T ss_pred cccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccC
No 498
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=78.43 E-value=38 Score=33.79 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=29.2
Q ss_pred eEEEEEEECCCCCeEEEEeCCCeEEEEECCCCcee
Q 015438 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (407)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~dg~i~vwd~~~~~~~ 204 (407)
..++++.-+|.+..++.+..||.|++|+.......
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs 49 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS 49 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchh
Confidence 35778888899999999999999999998765443
No 499
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=78.13 E-value=87 Score=32.20 Aligned_cols=68 Identities=15% Similarity=-0.013 Sum_probs=48.5
Q ss_pred cccEEEEEEeCCCCEEEEeeCCCeEEEEEcCCCeeeeee----e---------------ccCCCeEEEEecCCCCCEEEE
Q 015438 227 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----L---------------AHTSDVNTVCFGDESGHLIYS 287 (407)
Q Consensus 227 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~---------------~~~~~v~~i~~s~~~~~~l~s 287 (407)
...|.++....-+..++..-.||+|.++|-.+.+.+... . ..-.++..++|| |++..++.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafS-Pt~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFS-PTMCSLVQ 337 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEEC-cccceEEE
Confidence 446788888878889999999999999998877554333 1 011133457898 67777777
Q ss_pred EeCCCcEE
Q 015438 288 GSDDNLCK 295 (407)
Q Consensus 288 ~~~d~~i~ 295 (407)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 77888755
No 500
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=77.84 E-value=90 Score=32.20 Aligned_cols=112 Identities=10% Similarity=0.031 Sum_probs=67.7
Q ss_pred cEEEEEEeCC-CCEEEEeeCCCeEEEEEcCCCe-----eeeeeeccCC----------CeEEEEecCCCCCEEEEEeCCC
Q 015438 229 GIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK-----LSLRILAHTS----------DVNTVCFGDESGHLIYSGSDDN 292 (407)
Q Consensus 229 ~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~----------~v~~i~~s~~~~~~l~s~~~d~ 292 (407)
+..+++|+|. ...||+....|...|||+.... .+.....+.+ .-..|.|. .+.+.|+.++ ..
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~-~~~~~lLv~~-r~ 224 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWV-SDSNRLLVCN-RS 224 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEec-CCCCEEEEEc-CC
Confidence 5678999994 4589999999999999992211 1111111112 22367886 5555665654 44
Q ss_pred cEEEEeCcccCCCCcee--eeeccccCCeEEEEecCC--CCEEEEEeCCCcEEEEECCCC
Q 015438 293 LCKVWDRRCLNVKGKPA--GVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKM 348 (407)
Q Consensus 293 ~i~vwd~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~ 348 (407)
.+.++|+. ..... .........|..+.-+|. +..|+-. ...|...|+...
T Consensus 225 ~l~~~d~~----~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 225 KLMLIDFE----SNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred ceEEEECC----CCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 78889987 33221 112234457888887776 3333332 256888888774
Done!