BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015439
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U02|A Chain A, Crystal Structure Of Trehalose-6-Phosphate Phosphatase
Related Protein
Length = 239
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 85/216 (39%), Gaps = 31/216 (14%)
Query: 120 IFSDYDGTLSPIVDDPDRAIMSDGMRSAVRNVAKYFPTAIITGRSRDKVYELVGLTELYY 179
IF DYDGTL PI+ +P+ + G+ S + ++ + F T I+TGRS +++ +
Sbjct: 4 IFLDYDGTLVPIIXNPEESYADAGLLSLISDLKERFDTYIVTGRSPEEISRFL------- 56
Query: 180 AGSHGMDIMGPVDHTVSDDHPNSIKSTDQQGKEVNLFQPAREFLPMIDEVFRTLVENTKS 239
P+D H K Q + + FL + D ++
Sbjct: 57 ----------PLDINXICYHGACSKINGQ----IVYNNGSDRFLGVFDRIYEDTRSWVSD 102
Query: 240 IKGAKVENHKFCVSVHYRNVDEKSWPTIAQCVHDVLKDYPRLRLTHGRKVLEIRPVIDWN 299
G ++ V H P + + ++ + + + +G+ ++E+R V N
Sbjct: 103 FPGLRIYRKNLAVLYHLGLXGADXKPKLRSRIEEIARIFG-VETYYGKXIIELR-VPGVN 160
Query: 300 KGKAVEFXXXXXXXXXXXXXXPIYIGDDRTDEDAFK 335
KG A+ I GDD TDE AF+
Sbjct: 161 KGSAIR--------SVRGERPAIIAGDDATDEAAFE 188
>pdb|1D1P|A Chain A, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1)
pdb|1D1P|B Chain B, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1)
Length = 160
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 101 SALKYFEKIMSEAKKKKIAIFSDY---DGTLSPIVDDP 135
S + +KI E K K+ +F D+ DGT+ I++DP
Sbjct: 96 SNINNLKKIQPEGSKAKVCLFGDWNTNDGTVQTIIEDP 133
>pdb|1D2A|A Chain A, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1) Complexed With The Activator
Adenine
pdb|1D2A|B Chain B, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1) Complexed With The Activator
Adenine
Length = 160
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 101 SALKYFEKIMSEAKKKKIAIFSDY---DGTLSPIVDDP 135
S + +KI E K K+ +F D+ DGT+ I++DP
Sbjct: 96 SNINNLKKIQPEGSKAKVCLFGDWNTNDGTVQTIIEDP 133
>pdb|1D1Q|A Chain A, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1) Complexed With The Substrate
Pnpp
pdb|1D1Q|B Chain B, Crystal Structure Of A Yeast Low Molecular Weight Protein
Tyrosine Phosphatase (Ltp1) Complexed With The Substrate
Pnpp
Length = 161
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 101 SALKYFEKIMSEAKKKKIAIFSDY---DGTLSPIVDDP 135
S + +KI E K K+ +F D+ DGT+ I++DP
Sbjct: 97 SNINNLKKIQPEGSKAKVCLFGDWNTNDGTVQTIIEDP 134
>pdb|1E0V|A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme
Intermediate At 1.7 A
Length = 313
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 23/105 (21%)
Query: 144 MRSAVRNVAKYFPTAIITGRSRDKVYELVGLTELYYAGSHGMDIMGPVDHTVSDDHPNSI 203
+ +A +YF TAI +GR D Y + E + V+ ++ I
Sbjct: 5 LGAAAAQSGRYFGTAIASGRLSDSTYTSIAGREF---------------NMVTAENEMKI 49
Query: 204 KSTDQQGKEVNLFQPAREFLPMIDEVFRTLVENTKSIKGAKVENH 248
+T+ Q + N F A D V+ V+N K ++G + H
Sbjct: 50 DATEPQRGQFN-FSSA-------DRVYNWAVQNGKQVRGHTLAWH 86
>pdb|1E0W|A Chain A, Xylanase 10a From Sreptomyces Lividans. Native Structure
At 1.2 Angstrom Resolution
pdb|1E0X|A Chain A, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1E0X|B Chain B, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1OD8|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine Lactam
pdb|1V0K|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Deoxynojirimycin At Ph 5.8
pdb|1V0L|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-isofagomine At Ph 5.8
pdb|1V0M|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-deoxynojirimycin At Ph 7.5
pdb|1V0N|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine At Ph 7.5
Length = 313
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 23/105 (21%)
Query: 144 MRSAVRNVAKYFPTAIITGRSRDKVYELVGLTELYYAGSHGMDIMGPVDHTVSDDHPNSI 203
+ +A +YF TAI +GR D Y + E + V+ ++ I
Sbjct: 5 LGAAAAQSGRYFGTAIASGRLSDSTYTSIAGREF---------------NMVTAENEMKI 49
Query: 204 KSTDQQGKEVNLFQPAREFLPMIDEVFRTLVENTKSIKGAKVENH 248
+T+ Q + N F A D V+ V+N K ++G + H
Sbjct: 50 DATEPQRGQFN-FSSA-------DRVYNWAVQNGKQVRGHTLAWH 86
>pdb|1XAS|A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The
Streptomyces Lividans Xylanase A, A Member Of The F
Family Of Beta-1,4-D-Glycanses
Length = 299
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 23/105 (21%)
Query: 144 MRSAVRNVAKYFPTAIITGRSRDKVYELVGLTELYYAGSHGMDIMGPVDHTVSDDHPNSI 203
+ +A +YF TAI +GR D Y + E + V+ ++ I
Sbjct: 5 LGAAAAQSGRYFGTAIASGRLSDSTYTSIAGREF---------------NMVTAENEMKI 49
Query: 204 KSTDQQGKEVNLFQPAREFLPMIDEVFRTLVENTKSIKGAKVENH 248
+T+ Q + N F A D V+ V+N K ++G + H
Sbjct: 50 DATEPQRGQFN-FSSA-------DRVYNWAVQNGKQVRGHTLAWH 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,984,711
Number of Sequences: 62578
Number of extensions: 493708
Number of successful extensions: 1202
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1198
Number of HSP's gapped (non-prelim): 11
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)