BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015440
(406 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147854406|emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]
Length = 451
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/450 (71%), Positives = 360/450 (80%), Gaps = 50/450 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQVKIIAKNFMDMVASL A L+ LY N FICEAILRSLPPLAKKY+ QMLYID + A
Sbjct: 1 MPQVKIIAKNFMDMVASLPAMKLDALYHNTFICEAILRSLPPLAKKYILQMLYIDVPVTA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
K MEEWVL DGF+KH+VAIDRL+QLR+F+E ++KKET+YRLN TFQ+NLQKHLI GG L
Sbjct: 61 KAMEEWVLADGFSKHRVAIDRLIQLRVFTETSDRKKETSYRLNPTFQTNLQKHLIYGGVL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLI 178
PREPMPS IT RLP+L+DLEAYA+GQWECFLLQLISS Q E+ TNFSSS+MKVFQRGLL
Sbjct: 121 PREPMPSNITVRLPSLDDLEAYALGQWECFLLQLISSTQTEKLTNFSSSLMKVFQRGLLT 180
Query: 179 Q----------------------------------------------SILRSLKFLCQGI 192
Q S L L F G
Sbjct: 181 QREKEAPRLTESGFQFLLMDTNAQLWYIMREYISNSEERGVDPADLISFLLELSFHVTG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF 252
EAYN+NTL+E QR+ IKD DLGLVKLQQGRKESWFIPTKLATNLSMSL+D+S+RK+GF
Sbjct: 240 -EAYNINTLTEFQRNTIKDLVDLGLVKLQQGRKESWFIPTKLATNLSMSLSDTSSRKQGF 298
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VVVETNFR+YAYS+SKLHCEILRLFS++EYQLPNLIVGAITKESLYNAFENGITAEQIIS
Sbjct: 299 VVVETNFRLYAYSSSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 358
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
FLQQNAHPRVA+R P+VPENV DQIRLWE+DLNRVE P+H Y+EFPSRDVFEAACD+AR
Sbjct: 359 FLQQNAHPRVAERTPAVPENVTDQIRLWETDLNRVETMPSHLYDEFPSRDVFEAACDFAR 418
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+ GLLWEDSKKMRLVV AEIH+HMRE+LR
Sbjct: 419 EYGGLLWEDSKKMRLVVKAEIHLHMREYLR 448
>gi|255556021|ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus communis]
gi|223541708|gb|EEF43256.1| tfiih, polypeptide, putative [Ricinus communis]
Length = 451
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/452 (70%), Positives = 363/452 (80%), Gaps = 50/452 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQV+IIAKNFMDMVASL A L+KLY NPFIC+AILRSLPPLAKKYV Q+LYIDG +
Sbjct: 1 MPQVRIIAKNFMDMVASLPAMKLDKLYTNPFICQAILRSLPPLAKKYVVQILYIDGPVAD 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
KT+EEW+LPDG +KH+VAIDRL QLR+F+E ++KKE +Y+LN TFQ+NLQKHLI+GG L
Sbjct: 61 KTLEEWLLPDGSSKHRVAIDRLTQLRIFTEIVDRKKEISYKLNPTFQTNLQKHLIDGGVL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLI 178
P EP+ S I RLPTLE+L+ YA+GQWECFLL LI+S AER TNFSSSMMK+FQRGLL
Sbjct: 121 PGEPLASNIAVRLPTLEELDTYALGQWECFLLHLINSGHAERSTNFSSSMMKIFQRGLLT 180
Query: 179 Q----------------------------------------------SILRSLKFLCQGI 192
Q S L L F G
Sbjct: 181 QRDKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEERGLDSADLISFLLELSFHITG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF 252
EAYN+ L+E QR+MIKD ADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSS+RK+GF
Sbjct: 240 -EAYNMIMLTEFQRNMIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSSRKQGF 298
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VVVETNFRMYAYSTSKLHCEI+RLFS++EYQLPNL+VGA+TKESLY+AFENGITAEQIIS
Sbjct: 299 VVVETNFRMYAYSTSKLHCEIMRLFSRVEYQLPNLVVGAMTKESLYSAFENGITAEQIIS 358
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
FLQQNAHPRVA+RIPSVPENV DQIRLWESD+NRVEMTPAH Y+EFPSRDVFEAAC++AR
Sbjct: 359 FLQQNAHPRVAERIPSVPENVTDQIRLWESDMNRVEMTPAHLYDEFPSRDVFEAACNFAR 418
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
D +GLLWEDSK+MR+VV AEIH++MRE+LRGQ
Sbjct: 419 DWNGLLWEDSKRMRMVVKAEIHLNMREYLRGQ 450
>gi|449433857|ref|XP_004134713.1| PREDICTED: general transcription factor IIH subunit 4-like [Cucumis
sativus]
Length = 451
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/452 (71%), Positives = 362/452 (80%), Gaps = 50/452 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQVKIIAKNFMDMVASL A L++LYEN FICEAILRSLPPLAKK+V QMLYIDG + A
Sbjct: 1 MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
K+MEEWVLPDG +K+KVA+DRL+QLR+F E ++K+ETTYRLN TFQ+NLQK LI+G L
Sbjct: 61 KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLI 178
REPMPS IT RLP+LEDLEAYA+ QWECFLLQLI+S QAE+P+N SSS+MKVFQ+GLL
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
Query: 179 Q----------------------------------------------SILRSLKFLCQGI 192
Q S L L F G
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF 252
EAY+++TLS+ QR IKD ADLGLVKLQQGRKESWFIPTKLATNLSMSL DSS+RK GF
Sbjct: 240 -EAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGF 298
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VVVETNFRMYAYSTSKLHCEILRLFS+IEYQLPNLIVGAITKESLYNAF+NGITAEQI++
Sbjct: 299 VVVETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVT 358
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
FLQQNAHPRVA+RIPSVPENV DQIRLWESDLNRV++TPAH+Y+EFPSR+VFEAACDYAR
Sbjct: 359 FLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAR 418
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
+ +GLLWEDSK +RLVV A+IH HMRE LR Q
Sbjct: 419 EWNGLLWEDSKNLRLVVKADIHTHMREHLRRQ 450
>gi|224077128|ref|XP_002305144.1| predicted protein [Populus trichocarpa]
gi|222848108|gb|EEE85655.1| predicted protein [Populus trichocarpa]
Length = 449
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 308/452 (68%), Positives = 360/452 (79%), Gaps = 52/452 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQV+IIAKNFMDMVASL A L+ LY+N FICEAILRSLPPLAKKYV Q+L+ DG +
Sbjct: 1 MPQVRIIAKNFMDMVASLPAMKLDTLYQNAFICEAILRSLPPLAKKYVVQILFFDGPVSG 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
K +E+WVL DG TKH+VAIDRL+QLR+F E +KK+E++Y+LN TFQ+NL+KHL NGG L
Sbjct: 61 KLLEQWVLADGVTKHRVAIDRLIQLRIFIEVSDKKRESSYKLNQTFQANLRKHLTNGGVL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLI 178
PRE M + + +LP+LE+L+ YA+ QWECFLL LISS QAE+PT+ SSSMMK+FQRGLL
Sbjct: 121 PRETMAAVV--KLPSLEELDTYALEQWECFLLLLISSGQAEKPTSLSSSMMKIFQRGLLS 178
Query: 179 Q----------------------------------------------SILRSLKFLCQGI 192
Q S L L F G
Sbjct: 179 QRDRDAPRLTEGGFQFLLMDTNAQLWYIIREYITNSEERGTEPADLISFLLELSFHVTG- 237
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF 252
EAYN+NTL+EIQR+ IKD A+LGLVKLQQGRKESWFIPTKLATNLS+SLTDSS+RK+G+
Sbjct: 238 -EAYNMNTLTEIQRNTIKDLAELGLVKLQQGRKESWFIPTKLATNLSVSLTDSSSRKQGY 296
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VVVETNFR+YAYS+SKLHCEILRLFSKIEYQLPNLIVGAITKESLY AFENGIT++QIIS
Sbjct: 297 VVVETNFRLYAYSSSKLHCEILRLFSKIEYQLPNLIVGAITKESLYTAFENGITSDQIIS 356
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
FLQQNAHPRVA+R+PSVPENV DQIRLWE+DLNRVE+TP+H+Y+EFPSRD FEAACD+AR
Sbjct: 357 FLQQNAHPRVAERLPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDTFEAACDFAR 416
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
+ +GLLWEDSKKMR+VV AEIHM+MREFLRGQ
Sbjct: 417 EWNGLLWEDSKKMRVVVKAEIHMNMREFLRGQ 448
>gi|357461579|ref|XP_003601071.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355490119|gb|AES71322.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 452
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 304/453 (67%), Positives = 353/453 (77%), Gaps = 51/453 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MP+V+IIAKNFMDMVAS+ A L+KLY+N FICEAILRSLPPLAKKYV Q+L+IDG +PA
Sbjct: 1 MPEVRIIAKNFMDMVASMPAIKLDKLYQNGFICEAILRSLPPLAKKYVLQLLHIDGPVPA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE---EKKKETTYRLNSTFQSNLQKHLINGGA 117
K + EWVLPDG +KHKVAIDRLVQLR+F E +K E TY++NST+Q +LQ L++GG
Sbjct: 61 KLLAEWVLPDGLSKHKVAIDRLVQLRVFVEAFDNRKNEKTYQVNSTYQKSLQNLLVHGGT 120
Query: 118 LPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL 177
LPRE MPS IT RLPTLEDLE YA+ QWECFLLQLIS + ++ N SSS+MKVFQR LL
Sbjct: 121 LPRESMPSNITVRLPTLEDLETYALEQWECFLLQLISPSHVDKTLNISSSLMKVFQRRLL 180
Query: 178 IQ----------------------------------------------SILRSLKFLCQG 191
Q S + L F G
Sbjct: 181 SQRDREAPKLTESGFQFLLMDTNAQLWYIIREYITNSEERGVDAGDLISFMLELSFHVIG 240
Query: 192 ILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEG 251
EAYN+NTL+E QR++IKD ADLGLVKLQQGRKESWFIPTKLATNLS+S+T+SS+RKEG
Sbjct: 241 --EAYNINTLTEFQRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLSVSMTESSSRKEG 298
Query: 252 FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQII 311
FVVVETNFR+YAYSTSKLHCEILRLFS++EYQLPNLIVGAITKESLYNAF+NGITA+QI+
Sbjct: 299 FVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFDNGITADQIV 358
Query: 312 SFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 371
SFL+QNAHPRVA R+P+VPENV DQIRLWESDLNRVEMT A+YY+EFPSRDVFE ACD A
Sbjct: 359 SFLRQNAHPRVAQRVPAVPENVTDQIRLWESDLNRVEMTEAYYYDEFPSRDVFEGACDCA 418
Query: 372 RDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
R+ SGLLWEDSKKM LVV +E+H ++R+FLR Q
Sbjct: 419 REWSGLLWEDSKKMHLVVKSEVHTYVRDFLRRQ 451
>gi|42566894|ref|NP_193435.2| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|51969678|dbj|BAD43531.1| unnamed protein product [Arabidopsis thaliana]
gi|115646777|gb|ABJ17114.1| At4g17020 [Arabidopsis thaliana]
gi|332658439|gb|AEE83839.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 452
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 300/454 (66%), Positives = 350/454 (77%), Gaps = 50/454 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQVKIIAKNFMDMVASL A L+KLY N FICEAILRSLPPLAKKYV QMLYID +PA
Sbjct: 1 MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
MEEWVL DG +KH+VAIDRL+QLR+FSE ++K+ T+Y LN TFQ+NLQKH+I+GG L
Sbjct: 61 TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLI 178
PREPM S +LP+L++LE YA+ QWECFLLQLI+S Q E+ T SSSMMK+FQRGLL
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180
Query: 179 Q----------------------------------------------SILRSLKFLCQGI 192
Q S L L F G
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF 252
+AYNLNTL+E+Q + +KD ADLGLVKLQQGRK+SWFIPTKLATNLS+SL DSSARKEGF
Sbjct: 240 -QAYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGF 298
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VV+ETNFRMYAYSTSKL CEILRLF++IEYQLPNLI AITKESLYNAF+NGIT++QII+
Sbjct: 299 VVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIIT 358
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
FLQQN+HPR ADR+PS+PENV DQIRLWE+DL R+EMT AH+Y+EFPS+DVFEAACD+AR
Sbjct: 359 FLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAR 418
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+ GLLWEDSK+MRLVV +E+H MREFL Q++
Sbjct: 419 EWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQSR 452
>gi|42572935|ref|NP_974564.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|332658438|gb|AEE83838.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 462
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 300/454 (66%), Positives = 350/454 (77%), Gaps = 50/454 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQVKIIAKNFMDMVASL A L+KLY N FICEAILRSLPPLAKKYV QMLYID +PA
Sbjct: 1 MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
MEEWVL DG +KH+VAIDRL+QLR+FSE ++K+ T+Y LN TFQ+NLQKH+I+GG L
Sbjct: 61 TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLI 178
PREPM S +LP+L++LE YA+ QWECFLLQLI+S Q E+ T SSSMMK+FQRGLL
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180
Query: 179 Q----------------------------------------------SILRSLKFLCQGI 192
Q S L L F G
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF 252
+AYNLNTL+E+Q + +KD ADLGLVKLQQGRK+SWFIPTKLATNLS+SL DSSARKEGF
Sbjct: 240 -QAYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGF 298
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VV+ETNFRMYAYSTSKL CEILRLF++IEYQLPNLI AITKESLYNAF+NGIT++QII+
Sbjct: 299 VVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIIT 358
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
FLQQN+HPR ADR+PS+PENV DQIRLWE+DL R+EMT AH+Y+EFPS+DVFEAACD+AR
Sbjct: 359 FLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAR 418
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+ GLLWEDSK+MRLVV +E+H MREFL Q++
Sbjct: 419 EWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQSR 452
>gi|334186626|ref|NP_001190745.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|332658440|gb|AEE83840.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 482
Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust.
Identities = 300/453 (66%), Positives = 349/453 (77%), Gaps = 50/453 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQVKIIAKNFMDMVASL A L+KLY N FICEAILRSLPPLAKKYV QMLYID +PA
Sbjct: 1 MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
MEEWVL DG +KH+VAIDRL+QLR+FSE ++K+ T+Y LN TFQ+NLQKH+I+GG L
Sbjct: 61 TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLI 178
PREPM S +LP+L++LE YA+ QWECFLLQLI+S Q E+ T SSSMMK+FQRGLL
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180
Query: 179 Q----------------------------------------------SILRSLKFLCQGI 192
Q S L L F G
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF 252
+AYNLNTL+E+Q + +KD ADLGLVKLQQGRK+SWFIPTKLATNLS+SL DSSARKEGF
Sbjct: 240 -QAYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGF 298
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VV+ETNFRMYAYSTSKL CEILRLF++IEYQLPNLI AITKESLYNAF+NGIT++QII+
Sbjct: 299 VVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIIT 358
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
FLQQN+HPR ADR+PS+PENV DQIRLWE+DL R+EMT AH+Y+EFPS+DVFEAACD+AR
Sbjct: 359 FLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAR 418
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
+ GLLWEDSK+MRLVV +E+H MREFL Q+
Sbjct: 419 EWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQS 451
>gi|51969958|dbj|BAD43671.1| unnamed protein product [Arabidopsis thaliana]
Length = 452
Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust.
Identities = 300/454 (66%), Positives = 349/454 (76%), Gaps = 50/454 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQVKIIAKNFMDMVASL A L+KLY N FICEAILRSLPPLAKKYV QMLYID +PA
Sbjct: 1 MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
MEEWVL DG +KH+VAIDRL+QLR+FSE ++K+ T+Y LN TFQ+NLQKH+I+GG L
Sbjct: 61 TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLI 178
PREPM S +LP+L++LE YA+ QWECFLLQLI+S Q E+ T SSSMMK+FQRGLL
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180
Query: 179 Q----------------------------------------------SILRSLKFLCQGI 192
Q S L L F G
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF 252
+AYNLNTL+E+Q + +KD ADLGLVKLQQGRK+SWFIPTKLATNLS+SL DSSARKEGF
Sbjct: 240 -QAYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGF 298
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VV+ETNFRMYAYSTSKL CEILRLF++IEYQLPNLI AITKESLYNAF NGIT++QII+
Sbjct: 299 VVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFGNGITSDQIIT 358
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
FLQQN+HPR ADR+PS+PENV DQIRLWE+DL R+EMT AH+Y+EFPS+DVFEAACD+AR
Sbjct: 359 FLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAR 418
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+ GLLWEDSK+MRLVV +E+H MREFL Q++
Sbjct: 419 EWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQSR 452
>gi|358346685|ref|XP_003637396.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355503331|gb|AES84534.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 451
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 301/452 (66%), Positives = 348/452 (76%), Gaps = 50/452 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MP+V+IIAKNFMDMVAS+ L+KLYEN FICEAILRSLPPLAKKYV Q+ +IDG +PA
Sbjct: 1 MPEVRIIAKNFMDMVASMPTIKLDKLYENGFICEAILRSLPPLAKKYVLQLFHIDGPVPA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
K + EWVLPDG +KHKVAIDRLVQL +F E + K TY++N T+Q +LQK L++GG L
Sbjct: 61 KLLAEWVLPDGLSKHKVAIDRLVQLGVFVEALDSKNGKTYKVNPTYQRSLQKLLVHGGTL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLI 178
PRE MPS IT RLPTLEDLE YA+ QWECFLLQLIS + ++ N SSS+MKVFQR LL
Sbjct: 121 PRESMPSNITVRLPTLEDLETYALEQWECFLLQLISPSHVDKTLNISSSLMKVFQRRLLS 180
Query: 179 Q----------------------------------------------SILRSLKFLCQGI 192
Q S + L F G
Sbjct: 181 QRDREAPKLTESGFQFLLMDTNAQLWYIIREYITNSEERGVDAGDLISFMLELSFHVIG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF 252
EAYN+NTL+E QR++IKD ADLGLVKLQQGRKESWFIPTKLATNLS+S+T+SS+RKEGF
Sbjct: 240 -EAYNINTLTEFQRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLSVSMTESSSRKEGF 298
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VVVETNFR+YAYSTSKLHCEILRLFS++EYQLPNLIVGAITKESLYNAF+NGITA+QI+S
Sbjct: 299 VVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFDNGITADQIVS 358
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
F +QNAHPRVA RIP+VPENV DQIRLWESDLNRVEMT A+YY+EFPSRDVFE ACD AR
Sbjct: 359 FFRQNAHPRVAQRIPAVPENVTDQIRLWESDLNRVEMTEAYYYDEFPSRDVFEGACDCAR 418
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
+ SGLLWEDSKKM LVV +E+H ++R+FLR Q
Sbjct: 419 EWSGLLWEDSKKMHLVVKSEVHTYVRDFLRRQ 450
>gi|297800414|ref|XP_002868091.1| hypothetical protein ARALYDRAFT_493174 [Arabidopsis lyrata subsp.
lyrata]
gi|297313927|gb|EFH44350.1| hypothetical protein ARALYDRAFT_493174 [Arabidopsis lyrata subsp.
lyrata]
Length = 452
Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust.
Identities = 298/454 (65%), Positives = 347/454 (76%), Gaps = 50/454 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQVKIIAKNFMDMVASL A L+KLY N FICEAILRSLPPLAKKYV QMLYI+ +PA
Sbjct: 1 MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYINVPVPA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
MEEWVL DG +KH+VAIDRL+QLR+FSE ++K+ +Y LN TFQ+NLQKH+I+GG L
Sbjct: 61 AMMEEWVLADGASKHRVAIDRLIQLRIFSETSDRKRGISYSLNPTFQNNLQKHIISGGVL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLI 178
PREPM S +LP+L++LE YA+ QWECFLLQLI+S Q E+ T SSSMM++FQRGLL
Sbjct: 121 PREPMHSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMRIFQRGLLS 180
Query: 179 Q----------------------------------------------SILRSLKFLCQGI 192
Q S L L F G
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYISNAEERDVEPADLISFLLELSFHVTG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF 252
EAYN NTL+E+Q + +KD ADLGLVKLQQGRK+SWFIPTKLATNLS+SL DSSARKEGF
Sbjct: 240 -EAYNSNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGF 298
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VV+ETNFRMYAYSTSKL CEILRLF++IEYQLPNLI AITKESLYNAF+NGIT++QII+
Sbjct: 299 VVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIIT 358
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
FLQQN+HPR ADR+PS+PENV DQIRLWE+DL R+EMT AH+Y+EFPS+DVFEAACD+AR
Sbjct: 359 FLQQNSHPRCADRVPSIPENVTDQIRLWETDLKRIEMTQAHFYDEFPSKDVFEAACDFAR 418
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+ GLLWEDSK+MRLVV +E+H MREFL Q K
Sbjct: 419 EWGGLLWEDSKRMRLVVKSEVHNQMREFLHNQTK 452
>gi|356548733|ref|XP_003542754.1| PREDICTED: general transcription factor IIH subunit 4-like [Glycine
max]
Length = 451
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 298/450 (66%), Positives = 351/450 (78%), Gaps = 46/450 (10%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MP+V+IIAKNFMDMVAS+ A L+KLYEN FICEAILRSL PLAKKYV QML+ID ++ A
Sbjct: 1 MPEVRIIAKNFMDMVASMPAMKLDKLYENGFICEAILRSLLPLAKKYVIQMLHIDVSVAA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
K +EEWVLP G +KH+VAIDRLVQLR+F E ++K E TY++N TFQ +LQK L+ GG L
Sbjct: 61 KLLEEWVLPGGVSKHRVAIDRLVQLRVFLEAVDRKNEKTYKVNPTFQRSLQKLLVQGGTL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL- 177
PRE MPS IT RLPTLE+LEAYA+ QWECFLLQLIS +Q E+P N SSS+MKVFQR +L
Sbjct: 121 PRESMPSNITVRLPTLENLEAYALEQWECFLLQLISPSQVEKPLNISSSLMKVFQRRILS 180
Query: 178 ------------------------IQSILRS-------------------LKFLCQGILE 194
+ I+R L+ I E
Sbjct: 181 YRDKEAPKLTESGFQFLLMDTNAQLWYIIREYISNSEDRGVDAADLISFMLELSFHDIGE 240
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVV 254
AY+++TL+ QR++I D ADLGLVK+QQGRK SWFIPTKLATNLSMSL DSS+RK+GFVV
Sbjct: 241 AYSVDTLTSFQRTIINDLADLGLVKIQQGRKGSWFIPTKLATNLSMSLADSSSRKQGFVV 300
Query: 255 VETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFL 314
VETNFR+YAYSTSKLHCEILRLFS++EYQLPNLIVGAITKESLY+AFENGITAEQII+FL
Sbjct: 301 VETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAFENGITAEQIITFL 360
Query: 315 QQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDR 374
QQNAHPRVA+RIPSVPENV +QIRLWE+DLNRVEMT A+YY+EFPSRDVFE ACD AR+
Sbjct: 361 QQNAHPRVAERIPSVPENVTEQIRLWEADLNRVEMTDAYYYDEFPSRDVFEGACDCAREW 420
Query: 375 SGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
+GLLWEDSKKM +VV E+H ++R++LR Q
Sbjct: 421 NGLLWEDSKKMHMVVKTEVHQYVRDYLRRQ 450
>gi|356521347|ref|XP_003529318.1| PREDICTED: general transcription factor IIH subunit 4-like [Glycine
max]
Length = 451
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 294/452 (65%), Positives = 349/452 (77%), Gaps = 50/452 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MP+V+IIAKNFMDMVAS+ A L+KLYEN FICEAILRS+PPLAKKYV QML+ID + A
Sbjct: 1 MPEVRIIAKNFMDMVASMPAMKLDKLYENGFICEAILRSVPPLAKKYVIQMLHIDVPVAA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
K +EEWVLP G +KH+VAIDRLVQLR+F E ++K E TY++N TFQ +LQK L+ GG L
Sbjct: 61 KLLEEWVLPAGVSKHRVAIDRLVQLRVFLEAVDRKNEKTYKVNPTFQRSLQKLLVQGGTL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL- 177
PRE MPS IT RLPTLE+LEAYA+ QWECFLLQLIS +Q E+P N SSS+MKVFQR +L
Sbjct: 121 PRESMPSNITVRLPTLENLEAYALEQWECFLLQLISPSQVEKPLNISSSLMKVFQRRILS 180
Query: 178 ---------------------------------------------IQSILRSLKFLCQGI 192
+ S + L F G
Sbjct: 181 HRDKEAPKLTESGFQFLLMDTNAQLWYIIREYISNSEDRGVDAADLISFMLELSFHVIG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF 252
EAY+++TL+ QR++I D ADLGLVK+QQGRK SWFIPTKLATNLSMSL DSS+RK+GF
Sbjct: 240 -EAYSVDTLTSFQRTIINDLADLGLVKIQQGRKGSWFIPTKLATNLSMSLADSSSRKQGF 298
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VVVETNFR+YAYSTSKLHCEILRLFS++EYQLPNLIVGAITKESLY+A+ENGITAEQI++
Sbjct: 299 VVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAYENGITAEQIVT 358
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
FLQQNAHPRVA+R+PSVPENV +QIRLWE+DLNRVEMT +YY+EFPSRDVFE ACD AR
Sbjct: 359 FLQQNAHPRVAERVPSVPENVTEQIRLWEADLNRVEMTDTYYYDEFPSRDVFEGACDCAR 418
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
+ +GLLWEDSKKM +VV E+H ++R++LR Q
Sbjct: 419 EWNGLLWEDSKKMHMVVKTEVHPYVRDYLRRQ 450
>gi|32487401|emb|CAE05735.1| OSJNBb0017I01.15 [Oryza sativa Japonica Group]
Length = 451
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 283/450 (62%), Positives = 344/450 (76%), Gaps = 50/450 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQV ++A+NFMDMVA+L A L+ LY++ FICEA+LRSLPPLAKKY QMLY+ + A
Sbjct: 1 MPQVMVVARNFMDMVAALPAAKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVSAPVAA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
MEEWVL + KH+VAIDRL+QLR+F E +++KE +Y++N FQ N+QK+L++GG+L
Sbjct: 61 AAMEEWVLDEYAAKHRVAIDRLLQLRVFVEVRDRRKEVSYKMNQKFQGNMQKYLVDGGSL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL- 177
PREP+PS +TARLPTL +LE++A+ QWECFLLQLI+S+Q ER T+FSSSMM+ FQRGLL
Sbjct: 121 PREPIPSSVTARLPTLAELESFALEQWECFLLQLINSSQVERGTSFSSSMMRTFQRGLLS 180
Query: 178 ---------------------------------------------IQSILRSLKFLCQGI 192
+ S L L F G
Sbjct: 181 SRDGEAPRLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHTLG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF 252
EAY+LNTL+++QR+ I+D A+LGLVKLQQGRK+SWFIPTKLATNLS SL+DSS+ KEGF
Sbjct: 240 -EAYSLNTLTDVQRNAIRDLAELGLVKLQQGRKDSWFIPTKLATNLSASLSDSSSNKEGF 298
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VVVETNFRMYAYSTS+LHCEILRLFS++EYQLPNLIVG+ITKESLY AFENGITAEQIIS
Sbjct: 299 VVVETNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITKESLYGAFENGITAEQIIS 358
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
FLQQNAHPRVAD+IP+VPENV DQIRLWE+D NRV+MT +H YE+FPS+D+F+ CDYAR
Sbjct: 359 FLQQNAHPRVADKIPAVPENVTDQIRLWETDRNRVDMTLSHLYEDFPSKDMFDQCCDYAR 418
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
D LLWED+KKMRL+V E H MREFLR
Sbjct: 419 DHGCLLWEDAKKMRLIVRVEFHSEMREFLR 448
>gi|218195833|gb|EEC78260.1| hypothetical protein OsI_17944 [Oryza sativa Indica Group]
Length = 459
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 283/458 (61%), Positives = 344/458 (75%), Gaps = 58/458 (12%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQV ++A+NFMDMVA+L A L+ LY++ FICEA+LRSLPPLAKKY QMLY+ + A
Sbjct: 1 MPQVMVVARNFMDMVAALPAAKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVSAPVAA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
MEEWVL + KH+VAIDRL+QLR+F E +++KE +Y++N FQ N+QK+L++GG+L
Sbjct: 61 AAMEEWVLDEYAAKHRVAIDRLLQLRVFVEVRDRRKEVSYKMNQKFQGNMQKYLVDGGSL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL- 177
PREP+PS +TARLPTL +LE++A+ QWECFLLQLI+S+Q ER T+FSSSMM+ FQRGLL
Sbjct: 121 PREPIPSSVTARLPTLAELESFALEQWECFLLQLINSSQVERGTSFSSSMMRTFQRGLLS 180
Query: 178 ---------------------------------------------IQSILRSLKFLCQGI 192
+ S L L F G
Sbjct: 181 SRDGEAPRLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHTLG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQ--------GRKESWFIPTKLATNLSMSLTD 244
EAY+LNTL+++QR+ I+D A+LGLVKLQQ GRK+SWFIPTKLATNLS SL+D
Sbjct: 240 -EAYSLNTLTDVQRNAIRDLAELGLVKLQQMSRVKPWQGRKDSWFIPTKLATNLSASLSD 298
Query: 245 SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 304
SS+ KEGFVVVETNFRMYAYSTS+LHCEILRLFS++EYQLPNLIVG+ITKESLY AFENG
Sbjct: 299 SSSNKEGFVVVETNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITKESLYGAFENG 358
Query: 305 ITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVF 364
ITAEQIISFLQQNAHPRVAD+IP+VPENV DQIRLWE+D NRV+MT +H YE+FPS+D+F
Sbjct: 359 ITAEQIISFLQQNAHPRVADKIPAVPENVTDQIRLWETDRNRVDMTLSHLYEDFPSKDMF 418
Query: 365 EAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+ CDYARD LLWED+KKMRL+V E H MREFLR
Sbjct: 419 DQCCDYARDHGCLLWEDAKKMRLIVRVEFHSEMREFLR 456
>gi|326510735|dbj|BAJ91715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 451
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 280/452 (61%), Positives = 338/452 (74%), Gaps = 50/452 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQV ++A+NFMDMVA+L A L+ LY++ FICEA+LRS PPLAKKYV QMLY+ +PA
Sbjct: 1 MPQVMVVARNFMDMVAALPAAKLDMLYDSAFICEAVLRSFPPLAKKYVIQMLYVSAPMPA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
M+EWVL + +KHKVAIDRL+QLR+F E +++KE +Y++N+ FQ+N+QK+L++GG L
Sbjct: 61 AAMQEWVLDEYASKHKVAIDRLLQLRVFVEVRDRRKEVSYKMNNKFQANMQKYLVSGGCL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL- 177
PREP+P +TARLPTL +LE YA+ QWECFLLQLI+S+Q E+ T FSSSMMK FQRGLL
Sbjct: 121 PREPLPFNVTARLPTLVELENYALEQWECFLLQLINSSQVEKGTTFSSSMMKTFQRGLLS 180
Query: 178 ---------------------------------------------IQSILRSLKFLCQGI 192
+ S L L F QG
Sbjct: 181 SRDGEAAKLSENGFQFLLMETNAQLWYIMREYISSAEERGVDPTDLISFLLELSFHTQG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF 252
AY+L+TL+E+QR + D +LGLVKLQQGRK+SWFIPTKLATNLS SL+DS+A KEG
Sbjct: 240 -AAYSLSTLTEVQRIAVMDLMELGLVKLQQGRKDSWFIPTKLATNLSSSLSDSAASKEGI 298
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VVVETNFR+YAYS SKLHCEILRLFS++EYQLPNLIVGAITKESLY AF+NGITAEQIIS
Sbjct: 299 VVVETNFRLYAYSASKLHCEILRLFSRVEYQLPNLIVGAITKESLYGAFDNGITAEQIIS 358
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
FLQQNAHPRV D+IP VPENV DQIRLWE+D NRVEM +H YE+FPS+D+FE CD+AR
Sbjct: 359 FLQQNAHPRVIDKIPIVPENVTDQIRLWENDRNRVEMILSHVYEDFPSKDMFEQCCDHAR 418
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
D LLWED+KKMRL+V+ E H MREFLR Q
Sbjct: 419 DNGYLLWEDAKKMRLIVSGEFHQEMREFLRRQ 450
>gi|357166758|ref|XP_003580836.1| PREDICTED: general transcription factor IIH subunit 4-like
[Brachypodium distachyon]
Length = 451
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 279/452 (61%), Positives = 335/452 (74%), Gaps = 50/452 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQV ++A+NFMDMVA+L A L+ LY++ FICEA+LRS PPLAKKY QMLY+ +PA
Sbjct: 1 MPQVMVVARNFMDMVAALPAAKLDMLYDSAFICEAVLRSFPPLAKKYALQMLYVSAPMPA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
MEEWVL + +KHKVAIDRL+QLR+F E +++KE +Y++N FQ N+QK+L++GG+L
Sbjct: 61 AAMEEWVLDEYASKHKVAIDRLLQLRVFVEVRDRRKEVSYKMNDKFQGNMQKYLVDGGSL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL- 177
PREP+ S +T RLPTL +LE YA+ QWECFLLQLI+S+Q ER T+FSSSMMK FQRGLL
Sbjct: 121 PREPISSSVTGRLPTLTELENYALEQWECFLLQLINSSQVERGTSFSSSMMKTFQRGLLS 180
Query: 178 ---------------------------------------------IQSILRSLKFLCQGI 192
+ S L L F G
Sbjct: 181 SRDGDAPKLSENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHTLG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF 252
AY+ NTL+++QR I+D A+LGLVK+QQGRK+SWFIPTKLATNLS SL+DSSA KEG
Sbjct: 240 -AAYSFNTLTDVQRIAIRDLAELGLVKVQQGRKDSWFIPTKLATNLSSSLSDSSASKEGI 298
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VVVETNFR+YAYS S+LHCEILRLFS++EYQLPNLIVGAITKESLY AF+NGITAEQIIS
Sbjct: 299 VVVETNFRLYAYSASRLHCEILRLFSRVEYQLPNLIVGAITKESLYGAFDNGITAEQIIS 358
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
FL+QNAHPRVAD+IP VPENV DQIRLWE+D NRV+M +H YE+FPS+D+FE CD AR
Sbjct: 359 FLKQNAHPRVADKIPVVPENVTDQIRLWETDRNRVDMVLSHVYEDFPSKDMFEQCCDLAR 418
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
D LLWEDSKKMRL+V E H MREFLR Q
Sbjct: 419 DNGFLLWEDSKKMRLIVRVEFHQEMREFLRRQ 450
>gi|414584751|tpg|DAA35322.1| TPA: hypothetical protein ZEAMMB73_386928 [Zea mays]
Length = 451
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 277/452 (61%), Positives = 338/452 (74%), Gaps = 50/452 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQV ++A+NFMDMVA+L A L+ LY++ FICEA+LRSLPPLAKKY QMLY+ + A
Sbjct: 1 MPQVMVVARNFMDMVAALPAGKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVLAPVTA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
MEEWVL + KHKVAID+L+QLR+F E +++++ +Y++N FQ N+QK+L++GG+L
Sbjct: 61 AAMEEWVLDEYAAKHKVAIDKLLQLRVFVEVRDRRRDVSYKMNQKFQGNMQKYLVDGGSL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL- 177
PREP+P +T RLPT DLEAYA+ QWECFLLQLI+S+Q E+ ++FSSSMMK FQRGLL
Sbjct: 121 PREPLPLSVTGRLPTPADLEAYALDQWECFLLQLINSSQVEKGSSFSSSMMKTFQRGLLS 180
Query: 178 ---------------------------------------------IQSILRSLKFLCQGI 192
+ S L L F G
Sbjct: 181 SRDGEASKLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHKLG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF 252
AY+LNTL+++QR I+D A+LGLVK QQGRK+SWFIPT+LATNLS SL+DSS+ KEGF
Sbjct: 240 -AAYSLNTLTDVQRIAIRDLAELGLVKQQQGRKDSWFIPTQLATNLSASLSDSSSNKEGF 298
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VVVETNFRMYAYSTSKLHCEILRLF+++EYQLPNLIVGA+TKES+Y AFENGITAEQIIS
Sbjct: 299 VVVETNFRMYAYSTSKLHCEILRLFARVEYQLPNLIVGAVTKESIYGAFENGITAEQIIS 358
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
FL+QNAHPRVAD+IP+VPENV DQIRLWE+DLNRVEM P+H YE+FPS++ FE CDYAR
Sbjct: 359 FLRQNAHPRVADKIPAVPENVTDQIRLWETDLNRVEMIPSHLYEDFPSKEWFEQCCDYAR 418
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
D LLWED K+MRL+V E H MREFLR Q
Sbjct: 419 DNGYLLWEDPKRMRLIVRGEFHPEMREFLRRQ 450
>gi|242074798|ref|XP_002447335.1| hypothetical protein SORBIDRAFT_06g033130 [Sorghum bicolor]
gi|241938518|gb|EES11663.1| hypothetical protein SORBIDRAFT_06g033130 [Sorghum bicolor]
Length = 451
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 277/452 (61%), Positives = 336/452 (74%), Gaps = 50/452 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQV ++A+NFMDMVA+L A L+ LY++ FICEA+LRSLPPLAKKY QMLY+ + A
Sbjct: 1 MPQVMVVARNFMDMVAALPAGKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVLAPVTA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
MEEWVL + KHKVAID+L+QLR+F E +++++ +Y++N FQ N+QK+L++GG+L
Sbjct: 61 AAMEEWVLNEYAAKHKVAIDKLLQLRVFVEVRDRRRDVSYKMNQKFQGNMQKYLVDGGSL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL- 177
PREP+P +T RLPT DLEAYA+ QWECFLLQLI+S+Q E+ T+FSSSMMK FQRGLL
Sbjct: 121 PREPLPLSVTGRLPTPADLEAYALDQWECFLLQLINSSQVEKGTSFSSSMMKTFQRGLLS 180
Query: 178 ---------------------------------------------IQSILRSLKFLCQGI 192
+ S L L F G
Sbjct: 181 SRDGEASKLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHKLG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF 252
AY+LNTL+++QR I+D A+LGLVK QQGR + WFIPT+LATNLS SL+DSS+ KEGF
Sbjct: 240 -AAYSLNTLTDVQRIAIRDLAELGLVKQQQGRTDRWFIPTQLATNLSASLSDSSSNKEGF 298
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VVVETNFRMYAYSTSKLHCEILRLFS++EYQLPNLIVGA+TKES+Y AFENGITAEQIIS
Sbjct: 299 VVVETNFRMYAYSTSKLHCEILRLFSRVEYQLPNLIVGAVTKESIYGAFENGITAEQIIS 358
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
FL+QNAHPRVAD+IP+VPENV DQIRLWE+D NRVEM P+H YE+FPS++ FE CDYAR
Sbjct: 359 FLRQNAHPRVADKIPTVPENVTDQIRLWETDRNRVEMIPSHLYEDFPSKEWFEQCCDYAR 418
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
D LLWEDSK+MRL+V E H MREFLR Q
Sbjct: 419 DNGYLLWEDSKRMRLIVRGEFHPEMREFLRRQ 450
>gi|357123176|ref|XP_003563288.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 4-like [Brachypodium distachyon]
Length = 452
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 279/453 (61%), Positives = 334/453 (73%), Gaps = 51/453 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQV ++A+NFMDMVA+L A L+ LY++ FICEA+LRS PPL KKY QMLY+ +PA
Sbjct: 1 MPQVMVVARNFMDMVAALPATKLDMLYDSAFICEAVLRSFPPLPKKYTLQMLYVSAPMPA 60
Query: 61 KTMEEWVLPDGF-TKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGA 117
MEEWVL D + +KHKVAIDRL+QLR+F E + +KE +Y++N FQ N+QK+L++GG+
Sbjct: 61 AAMEEWVLLDEYASKHKVAIDRLLQLRVFVEVRDXRKEVSYKMNDKFQGNMQKYLVDGGS 120
Query: 118 LPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL 177
LPREP+PS +T RLPTL +LE YA+ QWECFLLQLI+S+Q ER T+FSSSMMK FQRGLL
Sbjct: 121 LPREPIPSSVTGRLPTLTELENYALEQWECFLLQLINSSQVERGTSFSSSMMKTFQRGLL 180
Query: 178 ----------------------------------------------IQSILRSLKFLCQG 191
+ S L L F G
Sbjct: 181 SSRDGDAPKLSENGFQFLLMETNVQLWYIMREYISSAEERGVDPTELISFLLELSFHTLG 240
Query: 192 ILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEG 251
AY+ NTL+++QR I+D A+LGLVK+QQGRK+SWFIPTKLATNLS SL+DSSA KEG
Sbjct: 241 --AAYSFNTLTDVQRIAIRDLAELGLVKVQQGRKDSWFIPTKLATNLSSSLSDSSASKEG 298
Query: 252 FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQII 311
VVVETNFR+YAYS S+LHCEILRLFS++EYQLPNLIVGAITKESLY AF+NGITAEQII
Sbjct: 299 IVVVETNFRLYAYSASRLHCEILRLFSRVEYQLPNLIVGAITKESLYGAFDNGITAEQII 358
Query: 312 SFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 371
SFL+QNAHP VAD+IP VPENV DQIRLWE+D NRV+M +H YE+FPS+D+FE CD A
Sbjct: 359 SFLKQNAHPXVADKIPVVPENVTDQIRLWETDRNRVDMVLSHVYEDFPSKDLFEQCCDLA 418
Query: 372 RDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
RD LLWEDSKKMRL+V E H MREFLR Q
Sbjct: 419 RDNGFLLWEDSKKMRLIVRVEFHQEMREFLRRQ 451
>gi|222629781|gb|EEE61913.1| hypothetical protein OsJ_16644 [Oryza sativa Japonica Group]
Length = 427
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/427 (62%), Positives = 329/427 (77%), Gaps = 28/427 (6%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQV ++A+NFMDMVA+L A L+ LY++ FICEA+LRSLPPLAKKY QMLY+ + A
Sbjct: 1 MPQVMVVARNFMDMVAALPAAKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVSAPVAA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
MEEWVL + KH+VAIDRL+QLR+F E +++KE +Y++N FQ N+QK+L++GG+L
Sbjct: 61 AAMEEWVLDEYAAKHRVAIDRLLQLRVFVEVRDRRKEVSYKMNQKFQGNMQKYLVDGGSL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERP----TNFSSSMMKVF-- 172
PREP+PS +TARLPTL +LE++A+ QWE + + E P F +M+
Sbjct: 121 PREPIPSSVTARLPTLAELESFALEQWEVRMTKAYVCIDGEAPRLTENGFQFLLMETNAQ 180
Query: 173 -------------QRGL----LIQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADL 215
+RG+ LI S L L F G EAY+LNTL+++QR+ I+D A+L
Sbjct: 181 LWYIMREYISSAEERGVDPTELI-SFLLELSFHTLG--EAYSLNTLTDVQRNAIRDLAEL 237
Query: 216 GLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILR 275
GLVKLQQGRK+SWFIPTKLATNLS SL+DSS+ KEGFVVVETNFRMYAYSTS+LHCEILR
Sbjct: 238 GLVKLQQGRKDSWFIPTKLATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSRLHCEILR 297
Query: 276 LFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCD 335
LFS++EYQLPNLIVG+ITKESLY AFENGITAEQIISFLQQNAHPRVAD+IP+VPENV D
Sbjct: 298 LFSRVEYQLPNLIVGSITKESLYGAFENGITAEQIISFLQQNAHPRVADKIPAVPENVTD 357
Query: 336 QIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHM 395
QIRLWE+D NRV+MT +H YE+FPS+D+F+ CDYARD LLWED+KKMRL+V E H
Sbjct: 358 QIRLWETDRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHS 417
Query: 396 HMREFLR 402
MREFLR
Sbjct: 418 EMREFLR 424
>gi|115461368|ref|NP_001054284.1| Os04g0680000 [Oryza sativa Japonica Group]
gi|113565855|dbj|BAF16198.1| Os04g0680000 [Oryza sativa Japonica Group]
Length = 444
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 243/465 (52%), Positives = 308/465 (66%), Gaps = 93/465 (20%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQV ++A+NFMDMVA+L A L+ LY++ FICEA+LRSLPPLAKKY QMLY+ + A
Sbjct: 1 MPQVMVVARNFMDMVAALPAAKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVSAPVAA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
MEEWVL + KH+VAIDRL+QLR+F E +++KE +Y++N FQ N+QK+L++GG+L
Sbjct: 61 AAMEEWVLDEYAAKHRVAIDRLLQLRVFVEVRDRRKEVSYKMNQKFQGNMQKYLVDGGSL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWEC---------------------------FLL- 150
PREP+PS +TARLPTL +LE++A+ QWE FL
Sbjct: 121 PREPIPSSVTARLPTLAELESFALEQWEVRMTKAYVCISYCLNATNVHSPSKGTHSFLYG 180
Query: 151 ---------QLISSAQAER-----PTNFS--SSMMKVFQRGLLIQSILRS---------- 184
QLISS + ++ NFS SS K+ + + I+R
Sbjct: 181 KIVLLAAIDQLISSRERDKFQLIHDENFSARSSEFKLMETNAQLWYIMREYISSAEERGV 240
Query: 185 -----LKFLCQ----GILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLA 235
+ FL + + EAY+LNTL+++QR+ I+D A+LGLVKLQQ
Sbjct: 241 DPTELISFLLELSFHTLGEAYSLNTLTDVQRNAIRDLAELGLVKLQQ------------- 287
Query: 236 TNLSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 295
GFVVVETNFRMYAYSTS+LHCEILRLFS++EYQLPNLIVG+ITKE
Sbjct: 288 ---------------GFVVVETNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITKE 332
Query: 296 SLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYY 355
SLY AFENGITAEQIISFLQQNAHPRVAD+IP+VPENV DQIRLWE+D NRV+MT +H Y
Sbjct: 333 SLYGAFENGITAEQIISFLQQNAHPRVADKIPAVPENVTDQIRLWETDRNRVDMTLSHLY 392
Query: 356 EEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 400
E+FPS+D+F+ CDYARD LLWED+KKMRL+V E H M ++
Sbjct: 393 EDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSEMHDY 437
>gi|414584750|tpg|DAA35321.1| TPA: hypothetical protein ZEAMMB73_386928 [Zea mays]
Length = 386
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/385 (60%), Positives = 286/385 (74%), Gaps = 50/385 (12%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQV ++A+NFMDMVA+L A L+ LY++ FICEA+LRSLPPLAKKY QMLY+ + A
Sbjct: 1 MPQVMVVARNFMDMVAALPAGKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVLAPVTA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
MEEWVL + KHKVAID+L+QLR+F E +++++ +Y++N FQ N+QK+L++GG+L
Sbjct: 61 AAMEEWVLDEYAAKHKVAIDKLLQLRVFVEVRDRRRDVSYKMNQKFQGNMQKYLVDGGSL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL- 177
PREP+P +T RLPT DLEAYA+ QWECFLLQLI+S+Q E+ ++FSSSMMK FQRGLL
Sbjct: 121 PREPLPLSVTGRLPTPADLEAYALDQWECFLLQLINSSQVEKGSSFSSSMMKTFQRGLLS 180
Query: 178 ---------------------------------------------IQSILRSLKFLCQGI 192
+ S L L F G
Sbjct: 181 SRDGEASKLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHKLG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF 252
AY+LNTL+++QR I+D A+LGLVK QQGRK+SWFIPT+LATNLS SL+DSS+ KEGF
Sbjct: 240 -AAYSLNTLTDVQRIAIRDLAELGLVKQQQGRKDSWFIPTQLATNLSASLSDSSSNKEGF 298
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VVVETNFRMYAYSTSKLHCEILRLF+++EYQLPNLIVGA+TKES+Y AFENGITAEQIIS
Sbjct: 299 VVVETNFRMYAYSTSKLHCEILRLFARVEYQLPNLIVGAVTKESIYGAFENGITAEQIIS 358
Query: 313 FLQQNAHPRVADRIPSVPENVCDQI 337
FL+QNAHPRVAD+IP+VPENV DQ+
Sbjct: 359 FLRQNAHPRVADKIPAVPENVTDQV 383
>gi|167997877|ref|XP_001751645.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697626|gb|EDQ83962.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 462
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/457 (44%), Positives = 295/457 (64%), Gaps = 55/457 (12%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MP+V+++++NFM+MVA+L A L+ LY+ + C+A+ RSLPPLAK+YV ++L+++ A+P
Sbjct: 1 MPRVRVVSRNFMEMVAALPAAKLDLLYDRHWTCQAVFRSLPPLAKQYVLRLLWVENAVPL 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKK---KETTYRLNSTFQSNLQKHLINGGA 117
K+ +EW P+ +KH++AIDRL QLR+ E+ T Y +N Q L++ L GG
Sbjct: 61 KSWQEWARPEALSKHQIAIDRLEQLRVILPERSDLSNSTHYLMNPKLQKQLRQALSTGGG 120
Query: 118 LPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSS-MMKVFQR-G 175
PR+ + + AR+P DLE YA+ QWE LLQL+ A A+ P + ++KVFQR G
Sbjct: 121 PPRDVVSESVAARVPNSADLENYAMKQWESVLLQLVDCA-ADGPAGPKNPFIIKVFQRSG 179
Query: 176 LL---------------------------------------------IQSILRSLKFLCQ 190
LL + L L F
Sbjct: 180 LLTPENESPSLTDLGFQFLLMDTNSQLWQLVREYVTSSEDRGTDSGELVGFLLELGFHLV 239
Query: 191 GILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSS--AR 248
G EAY++N+LS + ++ + A LGLVKLQQG KESW+IPTKLA+NLS SL++S+
Sbjct: 240 G--EAYSVNSLSPALQKVLDELAALGLVKLQQGMKESWYIPTKLASNLSASLSESTDWQS 297
Query: 249 KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 308
EGFVVVETNF++YAY++SKL EILR F+++EYQLPNL+V +TKES+ A +GI+AE
Sbjct: 298 SEGFVVVETNFKVYAYTSSKLQTEILRCFTRLEYQLPNLVVATLTKESVNKALGSGISAE 357
Query: 309 QIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAAC 368
QIISFL+++AHP VA +IP VPE V DQ+RLWE+D NRV+ PA++Y++FP+ ++EA
Sbjct: 358 QIISFLRKHAHPHVAQKIPVVPETVSDQLRLWETDRNRVQFEPAYFYDDFPTMAIYEAVV 417
Query: 369 DYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
+ARD GLL+ED+ RL+V +++H MR+++R Q+
Sbjct: 418 AHARDLGGLLFEDASAKRLIVRSDLHEDMRQYIRKQS 454
>gi|302806060|ref|XP_002984780.1| hypothetical protein SELMODRAFT_121159 [Selaginella moellendorffii]
gi|302808297|ref|XP_002985843.1| hypothetical protein SELMODRAFT_123271 [Selaginella moellendorffii]
gi|300146350|gb|EFJ13020.1| hypothetical protein SELMODRAFT_123271 [Selaginella moellendorffii]
gi|300147366|gb|EFJ14030.1| hypothetical protein SELMODRAFT_121159 [Selaginella moellendorffii]
Length = 459
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/457 (44%), Positives = 296/457 (64%), Gaps = 51/457 (11%)
Query: 1 MPQVKIIAKNFMDMVAS-LTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIP 59
MP V+ ++FMD+VAS LTA ++ LY + + C+A+LRSLPPLAK YV ++LY+D A+P
Sbjct: 1 MPNVRRATRDFMDLVASCLTAARIDALYASKWTCQAVLRSLPPLAKLYVLRLLYLDAAVP 60
Query: 60 AKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEE-----KKKETTYRLNSTFQSNLQKHLIN 114
K + EW+ D KHK A+DRLVQLR+F E +KKET YR+N FQ L+ L
Sbjct: 61 DKMLLEWIKGDAVAKHKNAVDRLVQLRVFLPEEKILSRKKETHYRVNPKFQEQLRLALST 120
Query: 115 GGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSS-MMKVFQ 173
G PR+P+P I R+P+ ++L+ YA +WE + L++ A + P+ ++ ++++FQ
Sbjct: 121 GLGTPRDPLPPDIAVRMPSAKELDDYATEKWEAWFSSLVNFASPDGPSASTNGFIVQLFQ 180
Query: 174 RGLLIQS------------------------ILRS---------------LKFLCQ---- 190
+ L+ S ++R ++FL +
Sbjct: 181 KADLLTSGQDPKITPAGFQFLLLDRNSQLWRVIREYVQYAEARQIDTGELIRFLLEIGFY 240
Query: 191 GILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA-RK 249
+ E Y++++L QR+ ++ A LG+++LQ+G K+ WFIPT+LAT LS SL++SSA +
Sbjct: 241 SVGEPYSMDSLPNSQRNFAEELAMLGVLQLQKGMKDRWFIPTRLATGLSASLSESSAWQT 300
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
EGF++VETNFR+YAY++SKLH E L +F + EY LPN++VG+ITKES+ AF +GI+A+Q
Sbjct: 301 EGFIMVETNFRVYAYTSSKLHIETLHVFVRTEYVLPNILVGSITKESVNGAFASGISADQ 360
Query: 310 IISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 369
II FLQQ+AHP VA ++PSVPE VCDQIRLWESD RV+ PA+ YE FPS V+E+
Sbjct: 361 IIKFLQQHAHPFVAQKVPSVPETVCDQIRLWESDRVRVQYLPAYCYEGFPSTSVYESVVA 420
Query: 370 YARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+ARDR+GLLWED+ + +VV E H +R FL+ NK
Sbjct: 421 HARDRNGLLWEDANRKMIVVGGEHHEAIRAFLQNINK 457
>gi|449521313|ref|XP_004167674.1| PREDICTED: RNA polymerase II transcription factor B subunit 2-like,
partial [Cucumis sativus]
Length = 296
Score = 360 bits (924), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 188/297 (63%), Positives = 215/297 (72%), Gaps = 50/297 (16%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQVKIIAKNFMDMVASL A L++LYEN FICEAILRSLPPLAKK+V QMLYIDG + A
Sbjct: 1 MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
K+MEEWVLPDG +K+KVA+DRL+QLR+F E ++K+ETTYRLN TFQ+NLQK LI+G L
Sbjct: 61 KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLI 178
REPMPS IT RLP+LEDLEAYA+ QWECFLLQLI+S QAE+P+N SSS+MKVFQ+GLL
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180
Query: 179 Q----------------------------------------------SILRSLKFLCQGI 192
Q S L L F G
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTG- 239
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK 249
EAY+++TLS+ QR IKD ADLGLVKLQQGRKESWFIPTKLATNLSMSL DSS+RK
Sbjct: 240 -EAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRK 295
>gi|90399251|emb|CAJ86205.1| B0213E10.4 [Oryza sativa Indica Group]
Length = 470
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 147/223 (65%), Positives = 169/223 (75%), Gaps = 30/223 (13%)
Query: 180 SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS 239
S L L F G EAY+LNTL+++QR+ I+D A+LGLVKLQQ
Sbjct: 275 SFLLELSFHTLG--EAYSLNTLTDVQRNAIRDLAELGLVKLQQ----------------- 315
Query: 240 MSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 299
GFVVVETNFRMYAYSTS+LHCEILRLFS++EYQLPNLIVG+ITKESLY
Sbjct: 316 -----------GFVVVETNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITKESLYG 364
Query: 300 AFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFP 359
AFENGITAEQIISFLQQNAHPRVAD+IP+VPENV DQIRLWE+D NRV+MT +H YE+FP
Sbjct: 365 AFENGITAEQIISFLQQNAHPRVADKIPAVPENVTDQIRLWETDRNRVDMTLSHLYEDFP 424
Query: 360 SRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
S+D+F+ CDYARD LLWED+KKMRL+V E H MREFLR
Sbjct: 425 SKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSEMREFLR 467
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 120/148 (81%), Gaps = 2/148 (1%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQV ++A+NFMDMVA+L A L+ LY++ FICEA+LRSLPPLAKKY QMLY+ + A
Sbjct: 1 MPQVMVVARNFMDMVAALPAAKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVSAPVAA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGAL 118
MEEWVL + KH+VAIDRL+QLR+F E +++KE +Y++N FQ N+QK+L++GG+L
Sbjct: 61 AAMEEWVLDEYAAKHRVAIDRLLQLRVFVEVRDRRKEVSYKMNQKFQGNMQKYLVDGGSL 120
Query: 119 PREPMPSGITARLPTLEDLEAYAIGQWE 146
PREP+PS +TARLPTL +LE++A+ QWE
Sbjct: 121 PREPIPSSVTARLPTLAELESFALEQWE 148
>gi|296084734|emb|CBI25875.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 144/248 (58%), Positives = 168/248 (67%), Gaps = 28/248 (11%)
Query: 180 SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS 239
S L L F G EAYN+NTL+E QR+ IKD DLGLVKLQQGRKESWFIPTKLATNLS
Sbjct: 11 SFLLELSFHVTG--EAYNINTLTEFQRNTIKDLVDLGLVKLQQGRKESWFIPTKLATNLS 68
Query: 240 MSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI----------- 288
MSL+D+S+RK+GFVVVETNFR+YAYS+SKLHCEILRLFS+ L + +
Sbjct: 69 MSLSDTSSRKQGFVVVETNFRLYAYSSSKLHCEILRLFSRYASMLFDCLLCICYSSQKGT 128
Query: 289 ---VGAITKESLYNAFENGITAEQIISFLQQNAHP-----------RVADRIPSVPENVC 334
V I E L F G S + A P +A++IP +
Sbjct: 129 LLDVSLIMYECL-RTFSLGKIIFWFFSSVSTVATPCHGYLVIFTISCLAEKIPCLQFTNM 187
Query: 335 DQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIH 394
QIRLWE+DLNRVE P+H Y+EFPSRDVFEAACD+AR+ GLLWEDSKKMRLVV AEIH
Sbjct: 188 SQIRLWETDLNRVETMPSHLYDEFPSRDVFEAACDFAREYGGLLWEDSKKMRLVVKAEIH 247
Query: 395 MHMREFLR 402
+HMRE+LR
Sbjct: 248 LHMREYLR 255
>gi|359497087|ref|XP_002267711.2| PREDICTED: general transcription factor IIH subunit 4-like [Vitis
vinifera]
Length = 238
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/223 (59%), Positives = 152/223 (68%), Gaps = 45/223 (20%)
Query: 180 SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS 239
S L L F G EAYN+NTL+E QR+ IKD DLGLVKLQQGRKESWFIPTKLATNLS
Sbjct: 58 SFLLELSFHVTG--EAYNINTLTEFQRNTIKDLVDLGLVKLQQGRKESWFIPTKLATNLS 115
Query: 240 MSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 299
MSL+D+S+RK+GFVVVETNFR+YAYS+SKLHCEILRLFS+
Sbjct: 116 MSLSDTSSRKQGFVVVETNFRLYAYSSSKLHCEILRLFSR-------------------- 155
Query: 300 AFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFP 359
+S + H + IRLWE+DLNRVE P+H Y+EFP
Sbjct: 156 ---------SSVSTVATPCHGYL--------------IRLWETDLNRVETMPSHLYDEFP 192
Query: 360 SRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
SRDVFEAACD+AR+ GLLWEDSKKMRLVV AEIH+HMRE+LR
Sbjct: 193 SRDVFEAACDFAREYGGLLWEDSKKMRLVVKAEIHLHMREYLR 235
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 34/43 (79%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPL 43
MPQVKIIAKNFMDMVASL A L+ LY N FICEAILR L L
Sbjct: 1 MPQVKIIAKNFMDMVASLPAMKLDALYHNTFICEAILRYLDLL 43
>gi|359497414|ref|XP_003635508.1| PREDICTED: general transcription factor IIH subunit 4-like, partial
[Vitis vinifera]
Length = 209
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 113/146 (77%), Positives = 129/146 (88%), Gaps = 2/146 (1%)
Query: 36 ILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKK 93
+LRSLPPLAKKY+ QMLYID + AK MEEWVL DGF+KH+VAIDRL+QLR+F+E ++K
Sbjct: 5 VLRSLPPLAKKYILQMLYIDVPVTAKAMEEWVLADGFSKHRVAIDRLIQLRVFTETSDRK 64
Query: 94 KETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLI 153
KET+YRLN TFQ+NLQKHLI GG LPREPMPS IT RLP+L+DLEAYA+GQWECFLLQLI
Sbjct: 65 KETSYRLNPTFQTNLQKHLIYGGVLPREPMPSNITVRLPSLDDLEAYALGQWECFLLQLI 124
Query: 154 SSAQAERPTNFSSSMMKVFQRGLLIQ 179
SS Q E+ TNFSSSMMKVFQRGLL Q
Sbjct: 125 SSTQTEKLTNFSSSMMKVFQRGLLTQ 150
>gi|296084771|emb|CBI25914.3| unnamed protein product [Vitis vinifera]
Length = 225
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 113/146 (77%), Positives = 129/146 (88%), Gaps = 2/146 (1%)
Query: 36 ILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKK 93
+LRSLPPLAKKY+ QMLYID + AK MEEWVL DGF+KH+VAIDRL+QLR+F+E ++K
Sbjct: 5 VLRSLPPLAKKYILQMLYIDVPVTAKAMEEWVLADGFSKHRVAIDRLIQLRVFTETSDRK 64
Query: 94 KETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLI 153
KET+YRLN TFQ+NLQKHLI GG LPREPMPS IT RLP+L+DLEAYA+GQWECFLLQLI
Sbjct: 65 KETSYRLNPTFQTNLQKHLIYGGVLPREPMPSNITVRLPSLDDLEAYALGQWECFLLQLI 124
Query: 154 SSAQAERPTNFSSSMMKVFQRGLLIQ 179
SS Q E+ TNFSSSMMKVFQRGLL Q
Sbjct: 125 SSTQTEKLTNFSSSMMKVFQRGLLTQ 150
>gi|384246869|gb|EIE20357.1| Tfb2-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 451
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 230/447 (51%), Gaps = 54/447 (12%)
Query: 10 NFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLP 69
+F+ + +L A + KLY + + C+A+LR L LAK+YV +ML++D + M+ W+
Sbjct: 2 DFISWLETLPADTVGKLYSSHWACQAVLRGLTSLAKQYVIRMLFLDVPVTKSVMDSWIAQ 61
Query: 70 DGFTKHKVAIDRLVQLRLF----SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPS 125
+KH AI+RL L+L ++ Y+L+ F+ L+ + GG + + +P+
Sbjct: 62 SSKSKHATAINRLKGLQLLLPSNVASNGQQAAYQLHPVFREQLRWAVSTGGKVGIDEVPA 121
Query: 126 GITARLPTLEDLEAYAIGQWEC------------------------FLLQLISSAQAERP 161
G+ + P+ E L +YA QWE +L L+ S AE
Sbjct: 122 GVLQQAPSREMLSSYAQQQWEVITVPLLNQLKCTCGLGSSFASLQTLMLYLVGSICAESR 181
Query: 162 T----------NFSSSMMKVFQRGLLIQSILRS-------LKFLCQ-GILEA---YNLNT 200
+ + + S + R + RS L FL Q G E + L+
Sbjct: 182 SIEEQGFQFLLSDTYSQLWRLLRAYIASGEERSGAPLGTILNFLLQLGFREVGSPFALSG 241
Query: 201 LSEIQRSMIKDFADLGLVKLQQGRKES-WFIPTKLATNLSMSLTDSSAR--KEGFVVVET 257
L + QR + D A LGL+ + S W PT+LA L+ + + +GFVVVET
Sbjct: 242 LDDSQRHIAADMAQLGLLMPFTAKDGSVWLAPTRLALALAGGSSGQAQHDVTDGFVVVET 301
Query: 258 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 317
N+R+YAY++S L +LRLF++ E LPNL VG +T+ES+ A G++A+QI+ +L+Q+
Sbjct: 302 NYRVYAYTSSLLQTALLRLFTRCECILPNLFVGVLTRESVTGALACGLSADQIVLYLRQH 361
Query: 318 AHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGL 377
AHP VA R P VPE V DQ+RLW++D RV A Y++FPS VF+ + AR
Sbjct: 362 AHPHVASRTPVVPEVVADQVRLWQADTMRVRHNRAVLYDDFPSAQVFQLSAQKARTLGVW 421
Query: 378 LWEDSKK--MRLVVNAEIHMHMREFLR 402
LWED K RL V H MRE+++
Sbjct: 422 LWEDPKAGMGRLAVQEAGHDAMREYIK 448
>gi|303272589|ref|XP_003055656.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463630|gb|EEH60908.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 476
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 143/471 (30%), Positives = 231/471 (49%), Gaps = 72/471 (15%)
Query: 2 PQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAK 61
P + +A F+ ++ L R +++LY +P C A+LRSLP LAK Y +++Y++G +P+
Sbjct: 1 PHTRAMASAFLGFISQLPPRHVDRLYNSPHACLAVLRSLPELAKHYCMRLMYVEGGVPSI 60
Query: 62 TMEEWVLPDGFTKHKVAIDRLVQLRLF------SEEKKKETTYRLNSTFQSNLQKHL--- 112
M+EWV G H ++ R+ +LR+ + + LN FQ ++ +
Sbjct: 61 DMDEWVTDLGRDAHAESVRRMRELRVMLPLEDVTGAAGDGESLGLNPKFQRGMRSIMEGG 120
Query: 113 --INGGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAE----------- 159
+G S + + LP+ EDLE+YA G+WE LL L ++ A
Sbjct: 121 GFGDGFDDDDAATASDLGSALPSPEDLESYAKGRWEALLLTLTGASDAFAAAGANAADLD 180
Query: 160 -----RPTNFSSSMMKVFQRGLL-----------------------IQSILRSLKFLCQG 191
R K + G+ + S L L F G
Sbjct: 181 VGALFRAAGLIGDASKGEKEGVTEAGFKFLLSTAREQIWALLDAPAVLSFLLKLTFQAPG 240
Query: 192 ILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEG 251
+ AY+ + L Q+ +++D A LGL+ + +++PT L++ LS G
Sbjct: 241 V--AYSTDGLPASQKGVVRDVAKLGLLYPLAAAGKGYYVPTSLSSGLSGGGGGDDDGDGG 298
Query: 252 ------------------FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 293
++VETNFR+YAY++S + EILRLF++ +Y+LPNL VG +T
Sbjct: 299 VGGGGKKSGDGGGVGARGHIIVETNFRVYAYTSSAVEVEILRLFTRPDYKLPNLYVGMMT 358
Query: 294 KESLYNAFENGITAEQIISFLQQNAHPRVADRI-PSVPENVCDQIRLWESDLNRVEMTPA 352
+E++ A GI+AEQI+S+L+++AHP+ P++P VCDQIRLW D NRV+ TP
Sbjct: 359 REAVVTALRGGISAEQIVSYLRKHAHPQARKTPGPAIPATVCDQIRLWSKDENRVKYTPC 418
Query: 353 HYYEEFPS-RDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
Y +FP+ +FE + A++R LW D ++L V E H M++ +
Sbjct: 419 VLYCDFPTGTGMFEKVAEIAKERGLYLWGDPVGLKLAVREEGHESMKDVFK 469
>gi|336370852|gb|EGN99192.1| hypothetical protein SERLA73DRAFT_90464 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383609|gb|EGO24758.1| hypothetical protein SERLADRAFT_361686 [Serpula lacrymans var.
lacrymans S7.9]
Length = 469
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 135/450 (30%), Positives = 224/450 (49%), Gaps = 59/450 (13%)
Query: 7 IAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEW 66
I + + S + L +LY+ P C +I R PL ++ + +L+++ AIP TM W
Sbjct: 16 IPHTLLPFLQSQSQNTLTRLYQRPSSCFSIFRLTGPLERQIIMNLLWLESAIPIATMSAW 75
Query: 67 VLPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSG 126
V+ +G + A+ L L + + K LN TF+++ ++ + GG +P+
Sbjct: 76 VIREGKKLYDAALTTLANLHILPQSNVK---LALNPTFKASFRQAITGGGNSSSFGVPAE 132
Query: 127 ITAR--LPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQR-GLLIQSILR 183
+ T+E L+AYA+ +WE L ++SS Q PT S ++ + QR GL+ Q+
Sbjct: 133 KDDKRSTNTVETLDAYALERWETILHYMVSSGQGSLPTKPSQGVLYLLQRSGLMTQNHGS 192
Query: 184 SLKFLCQG--------------------------------------------ILEAYNLN 199
+L+ G + Y+
Sbjct: 193 ALQITSAGFQFLLHTPHDQLWDLLLQYLHMAEERQMDLVEVLSFLFMLSTMDLGREYSTE 252
Query: 200 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL--------TDSSARKEG 251
LSE Q++M++D D GLV Q+ F PT+LAT L+ S T + +G
Sbjct: 253 GLSETQKAMLEDLRDYGLV-WQRKATSKRFSPTRLATTLTSSCPPLPTSTGTSGGPQSQG 311
Query: 252 FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQII 311
F+V+ETN+R+YAY+ L +L LF ++Y+ PNL+VG +T+ES+ A NGI+AEQII
Sbjct: 312 FIVLETNYRIYAYTDKPLQTAVLNLFITMKYRFPNLVVGMLTRESVKKALSNGISAEQII 371
Query: 312 SFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 371
S+L +AHP++ P +P V DQIRLWE + NR++ + Y++F S +E +YA
Sbjct: 372 SYLTTHAHPQMRKNNPLLPVTVQDQIRLWELERNRLKSEEGYLYKDFGSHADYEYVLNYA 431
Query: 372 RDRSGLLWEDSKKMRLVVNAEIHMHMREFL 401
+ +LWE++ + + + H ++R F+
Sbjct: 432 KQLDVVLWENTSRRCFFGSLDGHTNIRGFI 461
>gi|390594544|gb|EIN03954.1| transcription factor Tfb2 [Punctularia strigosozonata HHB-11173
SS5]
Length = 467
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 227/433 (52%), Gaps = 58/433 (13%)
Query: 23 LNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTK--HKVAID 80
L +L+ P C ++ R L PL ++ V +L+++ A+PA+TM++W++P G + + +++
Sbjct: 31 LTRLWGRPSACLSVFRLLRPLDQQLVMNLLWLESAVPAQTMQQWIVPGGNNRKLYHASLE 90
Query: 81 RLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLED---- 136
L +L + S + +LNST++++L + I GG + GI A +
Sbjct: 91 ILSRLHILS--GNTQVRLQLNSTWKASL-RAAITGGTVATSSGSFGIPAERGAKDSMDKD 147
Query: 137 -LEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRG-------------------- 175
L+A+A+ +WE L ++SS A P S+ ++ + QR
Sbjct: 148 GLDAFALERWETILHFMVSSGTAHNPPRPSAGVLFLLQRSGLMGGGGNPQITSAGFQFLL 207
Query: 176 ---------LLIQ----------SILRSLKFL----CQGILEAYNLNTLSEIQRSMIKDF 212
LL+Q ++ L F+ + Y+ LS+ Q++M++D
Sbjct: 208 HEPHAQLWELLLQYLRMAEERQMDLVEVLSFIFMLSTTELGREYSTENLSDTQKAMLEDL 267
Query: 213 ADLGLVKLQQGRKESWFIPTKLATNLSMSL----TDSSARKEGFVVVETNFRMYAYSTSK 268
D GL+ QQ F PT+LAT L+ S T S EGF+V+ETN+R+YAY+ +
Sbjct: 268 RDYGLI-WQQKPTSKRFSPTRLATTLTSSSPPLPTSGSGVSEGFIVLETNYRLYAYTDNP 326
Query: 269 LHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPS 328
L +L LF+ + + PNL+VG IT+ES+ A ++GI+AEQIIS+L +AHP++ P
Sbjct: 327 LQTAVLALFTTLRSRFPNLVVGQITRESVKRALQSGISAEQIISYLSTHAHPQMRKNNPL 386
Query: 329 VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLV 388
+P V DQIRLWE + NR++ Y EF S+ +E +YAR+ + +LWE+ K
Sbjct: 387 IPVTVQDQIRLWELEKNRLKSQEGFLYTEFASQGDYEYVLNYARELNVVLWENPVKRCFF 446
Query: 389 VNAEIHMHMREFL 401
+ E H ++R F+
Sbjct: 447 GSMEGHANIRGFI 459
>gi|72074363|ref|XP_796111.1| PREDICTED: general transcription factor IIH subunit 4
[Strongylocentrotus purpuratus]
Length = 469
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 142/449 (31%), Positives = 231/449 (51%), Gaps = 52/449 (11%)
Query: 5 KIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTME 64
K+ K+ + +L L++LY +P C A+ R LP L K + ++L+ID IP +
Sbjct: 14 KLDCKDLHGYLRTLQGSVLDRLYNHPATCLAVFRELPVLGKHCIMRVLFIDTPIPQAAVT 73
Query: 65 EWVLPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGG---ALP 119
W+ + + A+ L LRLF ++ + LN TF++NL+ LI GG A+
Sbjct: 74 SWIQSNQQEQLHAALKTLTDLRLFRDQSLPGGLPGWLLNLTFRTNLKTALIGGGKPWAIS 133
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTN-------FSSSMMKVF 172
+ G ++ L+ Y+ +WEC L L+ S++A + S +M++
Sbjct: 134 GKGGKGGKDKKVKETATLDKYSSERWECVLHFLVGSSKAVDTLSRDIATVLTHSGLMRLG 193
Query: 173 QRG------------LLIQS---------------------ILRSLKFLCQ----GILEA 195
+ G LL+ + I+ +L FL Q + +
Sbjct: 194 ESGGTPVITPSGFQFLLLDTPSQVWFFMLQYLETSQARGLDIVDALSFLFQLSFSTLGKD 253
Query: 196 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFV 253
Y+ ++E Q ++ +LGLV Q+ RK + PT+LA NL+ ++ + K+GF+
Sbjct: 254 YSSEGMTEQQLHFLQHLRELGLV-FQRKRKSMRYYPTRLAINLASGVSSMAKDDHKDGFI 312
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
VVETNFR+YAY+ S L EIL LF + Y+ PNL V A+T+ES+ A NGITAEQI+SF
Sbjct: 313 VVETNFRVYAYTESDLQVEILGLFCSMMYRFPNLSVAALTRESVQLAISNGITAEQILSF 372
Query: 314 LQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARD 373
L+ +AHP + + P VP + DQ+RLWE + +R+ T Y EF S FE DYA+D
Sbjct: 373 LRTHAHPNMRLKTPIVPPTISDQVRLWELERDRLSFTQGIIYNEFLSLHDFEVLRDYAKD 432
Query: 374 RSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
L+W+ + + ++V+ H ++++ +
Sbjct: 433 LGVLIWDSTARRIMIVSPAGHDSVKKYWK 461
>gi|260810774|ref|XP_002600123.1| hypothetical protein BRAFLDRAFT_57175 [Branchiostoma floridae]
gi|229285409|gb|EEN56135.1| hypothetical protein BRAFLDRAFT_57175 [Branchiostoma floridae]
Length = 457
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 138/454 (30%), Positives = 236/454 (51%), Gaps = 67/454 (14%)
Query: 5 KIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTME 64
K+ K+ + +L + L++LY P C A+ R L LAK YV ++L+++ A+P +
Sbjct: 8 KLDCKDLHGYLKTLGSSLLDELYGRPATCLAVFRELTDLAKHYVMRLLFLEQAVPQAVVG 67
Query: 65 EWVLPDGFTKHKVAIDRLVQLRLFSEEKKKE--TTYRLNSTFQSNLQKHLINGGA----- 117
WV ++H A+ +L +LR++ E + + L+ TF++NL+ L+ GG
Sbjct: 68 SWVTSGNHSEHLRAVSQLSELRVWHEHQISGGLAGWILSPTFRANLRTALLGGGKPWFSV 127
Query: 118 --LPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNF-----SSSMMK 170
LP + + A L+ Y++ +WE L ++ S +A+ + S +MK
Sbjct: 128 VQLPPDKHAKDVAA-------LDTYSLERWEVLLNFIVGSGEAQVSKDIMEILIKSGLMK 180
Query: 171 V-------------FQ-----------------------RGLLIQSILRSLKFLCQ---- 190
FQ RGL +++ +L+FL Q
Sbjct: 181 SEEGSLHPTITPAGFQFLLMDTPSQVWYIILQYLDTMQSRGL---NLVEALQFLFQISFS 237
Query: 191 GILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTD--SSAR 248
+ + Y +S+ + ++ +LGLV Q+ RK F PT+LA +L+ ++D
Sbjct: 238 TLGKDYPTEGMSDSMQQFLQHLRELGLVN-QRKRKSGRFYPTRLAIHLASGISDVEKDFH 296
Query: 249 KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 308
KEG++VVE+N+R+YAY+ S+L ++ LFS+I Y+ PN++V +T++S+ A GITA+
Sbjct: 297 KEGYLVVESNYRIYAYTDSELQVALIGLFSEILYRFPNMVVANLTRDSVQEAVVRGITAD 356
Query: 309 QIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAAC 368
QI+ FL+ NAHP+ R+P VP + DQIRLWE + +R+ T Y +F S+ FE
Sbjct: 357 QILHFLRVNAHPKALHRVPIVPPTISDQIRLWEMERDRLTFTEGVLYNQFLSQPDFEMLR 416
Query: 369 DYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+YA+D LLWE++ K +VV+ H ++ + +
Sbjct: 417 NYAKDLGVLLWENNPKRLMVVSKAGHDDVKRYWK 450
>gi|393246879|gb|EJD54387.1| transcription factor Tfb2 [Auricularia delicata TFB-10046 SS5]
Length = 480
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 137/444 (30%), Positives = 223/444 (50%), Gaps = 64/444 (14%)
Query: 21 RDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAID 80
R L +LY P C A+ R L P+ ++ V +L++D I T+ WV DG +K ++
Sbjct: 26 RSLTRLYSKPSACLAVFRLLSPVERQIVMTLLWLDNNIENATLTPWVTRDGLEIYKASVM 85
Query: 81 RLVQLRLF----SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLP--TL 134
L +L + S TT LN F++NL+ L+ GG P +A LP T+
Sbjct: 86 ELCKLHIVPATSSTPNLLPTTLDLNGVFKANLRLALVGGGDHNSFGKPVKRSAELPPVTV 145
Query: 135 EDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQR-GLLIQSILRS--------- 184
L+AYA+ +WE L ++SS + P S ++ + ++ GL+I+ RS
Sbjct: 146 SALDAYAVERWETILHFMVSSGTDQSPATPSGAVCNLLRKSGLMIRLDPRSDSSMKITSR 205
Query: 185 -LKFLCQ----------------------GILEA---------------YNLNTLSEIQR 206
+FL G++E Y+ + L++ Q
Sbjct: 206 GFQFLLSSPHAQLWELLLHYLELAEERGLGLMEVVSFLFMLSTMELGQEYSTDNLTKDQA 265
Query: 207 SMIKDFADLGLV--KLQQGRKESWFIPTKLATNLSMSLTD-------SSARKEGFVVVET 257
+++ + D GL+ + G + +F PT+LAT L SL + +SA GF+++ET
Sbjct: 266 TVLGELLDYGLIYQRALPGMSKRFF-PTRLATTLMSSLPELPRTAGVASATSGGFIILET 324
Query: 258 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 317
N+R+YAY+ + L +L LF + + PNL+VG +T++S+ A NGITAEQII++L +
Sbjct: 325 NYRLYAYTDNPLQIAVLNLFVSFKSRFPNLVVGMVTRDSVKKALANGITAEQIITYLSAH 384
Query: 318 AHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGL 377
AHP++ P +P V DQ+RLWE + NRV+ Y +F S+ FE DYAR +
Sbjct: 385 AHPQMRKNNPLLPVTVQDQVRLWELEKNRVKAEEGFLYMDFTSQADFELVLDYARKLGVV 444
Query: 378 LWEDSKKMRLVVNAEIHMHMREFL 401
+WE+ ++ A+ H ++R F+
Sbjct: 445 IWENGRQRMFFGKADGHNNIRTFI 468
>gi|392594388|gb|EIW83712.1| transcription factor Tfb2 [Coniophora puteana RWD-64-598 SS2]
Length = 486
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 135/470 (28%), Positives = 230/470 (48%), Gaps = 79/470 (16%)
Query: 7 IAKN----FMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
IA+N + + S + L +LY+ P C +I R L PL+++ V +L++D + A T
Sbjct: 13 IAQNSPHVLLPFLQSQSQNALTRLYQRPSSCLSIFRLLAPLSRQLVMNLLWLDSPVLAGT 72
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREP 122
M WV+PDG + A++ L +L + K LN TF++++++ + G
Sbjct: 73 MAAWVVPDGKKLYDEALNTLTRLHILQSSGAK---LALNPTFKASMRQAITCSGTTGSFG 129
Query: 123 MPSGITAR--LPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQR-GLLIQ 179
+P+ R P++E L+ YA+ +WE L ++SS Q + PT + ++ + QR GL+
Sbjct: 130 VPAQRDDRRDAPSVETLDGYAVQRWETILHYMVSSGQGQYPTKPTQGVLYLLQRSGLMAS 189
Query: 180 SILRSLKFLCQG--------------------------------------------ILEA 195
+L+ G +
Sbjct: 190 YHGSTLQITSSGFQFLLYSPHDQLWDLLLQYLHMVEERQMDLVEVLSFFFMLSTMELGRE 249
Query: 196 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM--------------- 240
Y+ LSE Q++M++D D GLV Q+ F PT+LAT L+
Sbjct: 250 YSTEPLSETQKAMLEDLRDYGLV-WQRKASSKRFSPTRLATTLTSVSPSLPTAGGSRNPG 308
Query: 241 ------SLTDSSA---RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 291
S+ +S+ GF+V+ETN+R+YAY+ + L +L LF ++Y+ PNL+VG
Sbjct: 309 SAPGASSVANSTGINTNDHGFIVLETNYRVYAYTDNPLQIAVLNLFITLKYRFPNLVVGM 368
Query: 292 ITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTP 351
+T+ES+ A NGI+AEQ+IS+L +AHP++ P +P V DQ+RLWE + NR++
Sbjct: 369 LTRESVRRALGNGISAEQVISYLTAHAHPQMRKNNPLLPVTVQDQVRLWELERNRLKSDD 428
Query: 352 AHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 401
Y++F ++ +E YA++ +LWE++ K + H ++R F+
Sbjct: 429 GFLYKDFATQADYEYVLAYAKELDVVLWENTSKRCFFGTLDGHTNVRGFI 478
>gi|393221241|gb|EJD06726.1| transcription factor Tfb2 [Fomitiporia mediterranea MF3/22]
Length = 464
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 130/434 (29%), Positives = 219/434 (50%), Gaps = 59/434 (13%)
Query: 23 LNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRL 82
L +LY P C ++ R L P+ ++ V +L+++ +IP TM W+ G + A+ L
Sbjct: 26 LTRLYGRPSACLSVFRLLAPMERQLVMNLLWLESSIPTATMSSWINRKGIKLYDSALSTL 85
Query: 83 VQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPS--GITARLP-TLEDLEA 139
+L + +K N TF+++L++ + GG +P+ G R TLE L+A
Sbjct: 86 SRLHIIGNPSQK---LNFNPTFKASLRQAITGGGTHRSFGVPAVDGEEKRSSVTLEMLDA 142
Query: 140 YAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRG------------------------ 175
YA+ +WE L ++SS + P S ++ + +R
Sbjct: 143 YAVERWETILHYMVSSGTGQMPARPSQGVLFLLERSGLMSGNGGNMKITSFGFQFLLHSP 202
Query: 176 ------LLIQ----------SILRSLKFL----CQGILEAYNLNTLSEIQRSMIKDFADL 215
LL+Q ++ L FL + Y+ L E Q++M++D D
Sbjct: 203 HAQLWELLLQYLHMAEERQMDLIEVLGFLFMLSTMELGRGYSTENLGETQKAMLEDLRDY 262
Query: 216 GLVKLQQGRKESWFIPTKLATNLSMSL--------TDSSARKEGFVVVETNFRMYAYSTS 267
GL+ Q+ F PT+LAT L+ SL ++A+ +GF+++ETN+R+YAY+ +
Sbjct: 263 GLI-WQKKASSRRFYPTRLATTLTSSLPPLPTSGSGGANAQAQGFIILETNYRIYAYTDN 321
Query: 268 KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIP 327
L +L LF ++Y+ PNL+VG++T++S+ A NGITA+QII +L +AHP++ P
Sbjct: 322 PLQTAVLNLFVTLKYRFPNLVVGSLTRDSVRKALANGITADQIIKYLTTHAHPQMRKNDP 381
Query: 328 SVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRL 387
+P V DQIRLWE + NR++ + Y F S+ +E YA+ +LWE++ K
Sbjct: 382 LIPVTVQDQIRLWELERNRLKSQEGYLYTAFASQADYEFVLKYAKQLGVVLWENAAKRCF 441
Query: 388 VVNAEIHMHMREFL 401
+ E H ++R F+
Sbjct: 442 FGSLEGHANIRGFI 455
>gi|321470926|gb|EFX81900.1| hypothetical protein DAPPUDRAFT_210868 [Daphnia pulex]
Length = 463
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 135/466 (28%), Positives = 235/466 (50%), Gaps = 73/466 (15%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
Q + K+ + +L A L++LY +P C A+ R LP L++ Y+ ++L++D A+P
Sbjct: 5 QRTLDCKDLHSYLKTLPAAVLDRLYNHPATCLAVFRELPELSRIYIMRILFVDQAVPKAI 64
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKET--TYRLNSTFQSNLQKHLINGGA--- 117
M WV P+ + + + L LR++ E + + + LN TF+ NL+ L+ GG
Sbjct: 65 MGSWVSPNSARELEDIVKLLTDLRVWQEVEMQGGLKGWLLNPTFRRNLKGALLGGGNEWS 124
Query: 118 ----LPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQ 173
+P GI L+ YA+G+WEC L ++ S Q E SS +++ Q
Sbjct: 125 MKPNTDADPKARGIAV-------LDEYAMGRWECVLHFMVGSHQHE---AISSDALQILQ 174
Query: 174 RGLLIQ--------SILR-SLKFL----------------------------CQGIL--- 193
L++ SI + +FL C G L
Sbjct: 175 HAGLMKKEPGENQLSITKDGFQFLLMDTSAQVWYFLLQYLDTANSRNLDLIDCLGFLFQL 234
Query: 194 ------EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------M 240
+ Y+ +++++ + ++ + GLV Q+ RK+ F PT+LA +++ +
Sbjct: 235 SFSTLGQDYSTDSMNDGLQKFLQHLREFGLV-YQRKRKDGRFYPTRLALDIAAGPKKSML 293
Query: 241 SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNA 300
+ ++S++ G++VVETN+R+YAY+ S L ++ LF ++ Y+ PNL+VG IT+ES+ A
Sbjct: 294 NSLNASSQTTGYIVVETNYRVYAYTDSSLQVALIALFCELIYRFPNLVVGIITRESVREA 353
Query: 301 FENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPS 360
+ GITA+QI+SFL+Q+AH P +P + DQI+LW + +R Y +F S
Sbjct: 354 LKRGITADQIVSFLRQHAHSECYKEPPVLPSTIADQIKLWAIERDRFLYKDGVLYNQFDS 413
Query: 361 RDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+ FE +YA++R L+W ++VV E H +R+F + ++
Sbjct: 414 QADFEILRNYAQERGLLVWHTLNGRKMVVTKEGHDEVRKFWKRHSR 459
>gi|348542188|ref|XP_003458568.1| PREDICTED: general transcription factor IIH subunit 4 [Oreochromis
niloticus]
Length = 461
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 144/457 (31%), Positives = 222/457 (48%), Gaps = 58/457 (12%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V++ KN + + L+ L++LY +P C A+ R LP LAK YV +ML++D +P
Sbjct: 4 RVQLQCKNLHEYLKELSPEILDRLYNHPATCLAVYRELPSLAKNYVMRMLFLDQPLPQAA 63
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKET--TYRLNSTFQSNLQKHLINGG-ALP 119
+ WV D H I L LRL+ ++ + Y LN F+ NL+ L+ GG A
Sbjct: 64 VALWVKKDSQKDHDECISVLAGLRLWHSQQLQGGLQGYILNPVFKDNLKTALLGGGRAWA 123
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA--------------------E 159
E G +E L+ YA+ +WE L ++ S A E
Sbjct: 124 DEGSTLGPDRHARDIESLDRYAMERWEIILQFMVGSPSAVSQDLAQLLVQAGLMKSEAGE 183
Query: 160 RPT------------------NFSSSMMKVFQ-RGL---LIQSILRSLKFLCQGILEAYN 197
P F+ +K Q RG+ I S L L F G Y+
Sbjct: 184 APYITSAGFQFLLLDTASQLWYFTLQYLKTAQSRGMDLVEILSFLFQLSFSSLG--RDYS 241
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS----------SA 247
+ +SE + ++ + GLV Q+ RK + PT+LA L+ +T S
Sbjct: 242 VEGMSESLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAITLAAGVTSSSSVSNLSSSPGT 300
Query: 248 RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITA 307
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A NGITA
Sbjct: 301 GDAGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFPNVVVAQLTRESVQQAIANGITA 360
Query: 308 EQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAA 367
+QII FL+ AHP + + P +P + DQIRLWE + +R++ T Y +F S+ FE
Sbjct: 361 QQIIHFLRTRAHPVMLTQTPVLPPTITDQIRLWELERDRLQFTEGVLYNQFLSQADFEVL 420
Query: 368 CDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
D A+ L+W+D +VV + H ++ F + Q
Sbjct: 421 RDRAQGLGCLVWQDVAHRVMVVTPQGHSEVKRFWKRQ 457
>gi|432883135|ref|XP_004074222.1| PREDICTED: general transcription factor IIH subunit 4-like [Oryzias
latipes]
Length = 460
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 135/459 (29%), Positives = 228/459 (49%), Gaps = 63/459 (13%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V++ KN + + L L++LY +P C A+ R LP LAK YV +ML+++ +P
Sbjct: 4 RVQLQCKNLHEYLRELGPDVLDRLYNHPATCLAVCRELPLLAKNYVMRMLFLEQPLPQAA 63
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKET--TYRLNSTFQSNLQKHLINGGAL-P 119
+ WV DG H + L LRL+ ++ + Y LN F+ NL+ L+ GG +
Sbjct: 64 VALWVRKDGQRDHDECVSVLTGLRLWHSQQLQGGLQGYILNPVFKDNLRIALLGGGKVWA 123
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ 179
E + G +E L+ YA+ +WE L ++ S P+ S + ++ + L++
Sbjct: 124 DEGIILGPDRHARDIESLDRYAMERWEVILQFMVGS-----PSAVSQDLAQLLVQAGLMK 178
Query: 180 S-----------------------------------------ILRSLKFLCQ----GILE 194
S ++ L FL Q +
Sbjct: 179 SEAGEAPYITSAGFQFLLLDTASQLWYLTLQYLNTAQSRGMELVEILSFLFQLSFSTLGR 238
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSS-------- 246
Y++ +SE + ++ + GLV Q+ RK + PT+LA L+ ++ +S
Sbjct: 239 DYSVEGMSESLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAITLAAGVSSNSPSNMTNTP 297
Query: 247 -ARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGI 305
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A NGI
Sbjct: 298 GTGDAGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFPNVVVAHLTRESVQQAIANGI 357
Query: 306 TAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFE 365
TA+QII FL+ AHP + + P++P + DQIRLWE + +R++ T Y +F S+ FE
Sbjct: 358 TAQQIIHFLRTRAHPVMLKQSPALPPTITDQIRLWELERDRLQFTEGVLYNQFLSQADFE 417
Query: 366 AACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
D A+ L+W+D+ +VV + H +++F + Q
Sbjct: 418 VLRDRAQGLGCLVWQDASHRAMVVTPQGHSEVKKFWKRQ 456
>gi|328873270|gb|EGG21637.1| general transcription factor IIH [Dictyostelium fasciculatum]
Length = 453
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 139/449 (30%), Positives = 229/449 (51%), Gaps = 67/449 (14%)
Query: 15 VASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTK 74
++SL ++ LY + F C A+LRSLPP AK+Y+ ++L +D +I +++ +W
Sbjct: 7 LSSLPENEIQDLYSDAFTCRAVLRSLPPRAKQYLMRLLVVD-SISMQSVYQWTTQSSIQA 65
Query: 75 HKVAIDRLVQLRLFSEEKKKETTYR-----LNSTFQSNLQKHLINGGALPREPMPSGITA 129
HK AI +L+ L++ + + LN F+ N++ L + ++ + + +A
Sbjct: 66 HKDAIRKLLDLKILTRVPNPKGVVSQDQLFLNQRFKDNIKDSLTDLDSVVLKSVKDNQSA 125
Query: 130 RLP----TLEDLEAYAIGQWECFLLQLISSAQA--ERPTNF--SSSMMKVFQRGLLIQS- 180
+ T+E+L+ Y+ GQWE L L +A E ++ SS++ K + I S
Sbjct: 126 QQHIKPMTVEELDKYSKGQWEKVLYYLSDEGKAPPELVSDLLLSSNLTKKNGTSIAITSE 185
Query: 181 ------------------------------------ILRSLKFLCQGILEAYNLNTLSEI 204
L L FL G ++Y L L+
Sbjct: 186 GFKFMLKDIYTQIWTLIIVYLNTLESRGRPRKEALIFLFKLSFLTLG--KSYYLADLNPN 243
Query: 205 QRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT-----------DSSARKEGFV 253
QR M+ D + GLV ++ K F PT+LA +L+ T +S + +G++
Sbjct: 244 QRDMLFDLKEFGLVYVR-SEKSDVFYPTRLAISLATGRTVSLMNDLAQEISTSQKDQGYL 302
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
++ETNFR+YAY+ S L ++ LF K+ Y+LPNL VG +T+ES+ +A +GITA+QI+ F
Sbjct: 303 ILETNFRIYAYTQSSLQISLISLFVKMLYRLPNLAVGILTRESVRSALLHGITADQIVDF 362
Query: 314 LQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARD 373
++QNAHP + I PE V +QIRLWES+ NR+ A ++ FP+ + F +A+D
Sbjct: 363 VKQNAHPNMV--ISGYPEVVFEQIRLWESERNRITYKKAVLFDSFPNAESFSKTVTFAKD 420
Query: 374 RSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+ L+W D K LVVN E +R +++
Sbjct: 421 QYFLVWFDETKKMLVVNDEGSEPIRNYIK 449
>gi|41053973|ref|NP_956221.1| general transcription factor IIH subunit 4 [Danio rerio]
gi|39794736|gb|AAH64301.1| General transcription factor IIH, polypeptide 4 [Danio rerio]
Length = 466
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 141/462 (30%), Positives = 220/462 (47%), Gaps = 63/462 (13%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V++ KN + + LT L++LY +P C A+ R LPPLAK YV +ML++D +P
Sbjct: 4 RVQLQCKNLHEYLKELTPEILDRLYNHPATCLAVYRELPPLAKNYVMRMLFLDHPLPQAA 63
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKET--TYRLNSTFQSNLQKHLINGGA-LP 119
+ WV H + L LRL+ + + + LN F+ NL+ L+ GG
Sbjct: 64 VALWVKKGSQKDHDQCVSVLTGLRLWHSQHLQGGLQGFVLNPVFKDNLRIALLGGGKPWA 123
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFS-----SSMMKV--- 171
E G +E L+ YA+ +WE L ++ S A + + + +MK
Sbjct: 124 DEGANLGPDRHARDVESLDRYAMERWEVILHFMVGSPSAAVSQDLAQLLIQAGLMKSETG 183
Query: 172 ---------FQRGLL--------------------------IQSILRSLKFLCQGILEAY 196
FQ LL I S L L F G Y
Sbjct: 184 EAPCITSAGFQFLLLDTASQLWYFTLQYLKTAQSRGMDLVEILSFLFQLSFSTLG--RDY 241
Query: 197 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE------ 250
++ +SE + ++ + GLV Q+ RK + PT+LA L+ +T + A
Sbjct: 242 SVEGMSESLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAITLAAGVTANPASGSASSALG 300
Query: 251 --------GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFE 302
GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PNL+V +T+ES+ A
Sbjct: 301 AIPGTGDTGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFPNLVVAQVTRESVQQAIS 360
Query: 303 NGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRD 362
NGITA+QII FL+ AHP + + P +P + DQIRLWE + +R++ T Y +F S+
Sbjct: 361 NGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELEKDRLQFTEGVLYNQFLSQA 420
Query: 363 VFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
FE D A+ L+W++ +VV H ++ F + Q
Sbjct: 421 DFEVLRDRAQGLGVLVWQNPAHRVMVVTPHGHSEVKRFWKRQ 462
>gi|147899535|ref|NP_001085110.1| general transcription factor IIH, polypeptide 4, 52kDa [Xenopus
laevis]
gi|47939830|gb|AAH72322.1| MGC83106 protein [Xenopus laevis]
Length = 455
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 137/454 (30%), Positives = 228/454 (50%), Gaps = 51/454 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
+ +V + KN + + L+ L++LY +P C A+ R LP LAK YV +ML+++ +P
Sbjct: 3 LQRVHLKCKNLHEFLQELSPGVLDRLYNHPATCLAVFRELPGLAKNYVMRMLFLEQPLPQ 62
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGG-A 117
+ WV + F +H+ L LRL+ ++ LN F+ NL+ L+ GG A
Sbjct: 63 AAVALWVKKENFNEHEENTQVLTGLRLWHTQQLPGGLQGLILNPIFRENLKIALLGGGKA 122
Query: 118 LPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA------------------- 158
+ G + L+ YA +WE L ++ S A
Sbjct: 123 WADDGCLLGPDKHGKDVVSLDKYAEERWEVILHFMVGSPSAAVSQDLAQLLIQAGLMKNE 182
Query: 159 -----------------ERPTNFSSSMMKVFQ----RGLLIQSILR---SLKFLCQGILE 194
+ P+ M++ + RG+ + IL L F G +
Sbjct: 183 SGEAPCISSAGFQFLLLDTPSQLWYFMLQYLKSAESRGMNLVEILSFMFQLSFSTLG--K 240
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGF 252
Y++ +S+ + ++ + GLV Q+ RK + PT+LA NL+ ++ S + K+GF
Sbjct: 241 DYSVEGMSDSLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAINLASGISGSVVDSHKQGF 299
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
+VVETN+R+YAY+ S+L ++ LFS++ Y+ PNL+V +T+E++ A NGITAEQII
Sbjct: 300 IVVETNYRIYAYTDSELQIALIALFSEMLYRFPNLVVAQVTRENVQQAIGNGITAEQIIH 359
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
FL+ AHP + + P++P + DQIRLWE + +R+ + Y +F S+ FE +YAR
Sbjct: 360 FLRTRAHPVMLQQNPALPPTITDQIRLWELERDRLRFSEGVLYNQFLSQVDFELLRNYAR 419
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
D L++E+ K +VV H ++ F + Q +
Sbjct: 420 DLGVLVFENPAKRVMVVTPGGHSDVKRFWKRQKQ 453
>gi|383852611|ref|XP_003701820.1| PREDICTED: general transcription factor IIH subunit 4-like
[Megachile rotundata]
Length = 467
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 138/454 (30%), Positives = 231/454 (50%), Gaps = 62/454 (13%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
KN + + S LNKLY NP IC A+ R LP +AK YV ++L+++ +P + W
Sbjct: 18 CKNLQEYLKSRPPEILNKLYHNPPICLAVFRELPVIAKHYVMRLLFVEQPVPQAVIASWC 77
Query: 68 LPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGGALPREPMPS 125
F +H+ + L +L ++ E + LN+TF+ NL+ L+ GG P
Sbjct: 78 SKLHFEEHQKVVSILNELNVWKEASIPGGLPGWILNTTFKKNLKIVLLGGGK------PW 131
Query: 126 GITARLPT------LEDLEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK--- 170
++ +L T + L++YA+ +WEC L ++ S Q E + + +MK
Sbjct: 132 TMSNQLETDSKPRDVAFLDSYALERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDE 191
Query: 171 ------VFQRG---LLIQS---------------------ILRSLKFLCQ----GILEAY 196
+ Q G LL+++ ++ L FL Q + + Y
Sbjct: 192 ADGSPVITQAGFQFLLLETASQVWYFILQYLDTIEARGLDLVECLTFLFQLNFSTLGKDY 251
Query: 197 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFV 253
+ +SE + ++ + GLV Q+ RK F PT+LA N++ +R KEG++
Sbjct: 252 STEGMSEGLLTFLQHLREFGLV-YQRKRKAGRFYPTRLALNIATGQNKPLSRDPDKEGYI 310
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
VVETN+R+YAY+ S L +L LF ++ Y+ PNL+V +T++S+ A ++GITA QI+ +
Sbjct: 311 VVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITASQIVGY 370
Query: 314 LQQNAHPRVADRIPSV-PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
LQQ+AH ++ + P V P + DQI+LWE++ NR + Y +F S+ FE D+A
Sbjct: 371 LQQHAHSKMIEAGPPVLPPTIVDQIKLWENERNRFIFSEGVLYSQFLSQTDFEVLRDHAL 430
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
L+W+ +K +VV H +++F + +K
Sbjct: 431 STGVLIWQSERKRTMVVTKAGHDDVKKFWKRYSK 464
>gi|350413829|ref|XP_003490125.1| PREDICTED: general transcription factor IIH subunit 4-like [Bombus
impatiens]
Length = 467
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 138/454 (30%), Positives = 232/454 (51%), Gaps = 62/454 (13%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
KN + + S LNKLY NP IC A+ R LP +AK YV ++L+++ +P + W
Sbjct: 18 CKNLQEYLKSRPPEVLNKLYHNPPICLAVFRELPVIAKHYVMRLLFVEQPVPQAVIASWC 77
Query: 68 LPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGGALPREPMPS 125
F +H+ + L +L ++ E + LN+TF+ NL+ L+ GG P
Sbjct: 78 SKLHFEEHQKVVLILNELNVWKEASIPGGLPGWILNTTFKKNLKIVLLGGGK------PW 131
Query: 126 GITARLPT------LEDLEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK--- 170
++ +L T + L++YA+ +WEC L ++ S Q E + + +MK
Sbjct: 132 TMSNQLETDSKPRDVAFLDSYALERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDE 191
Query: 171 ------VFQRG---LLIQS---------------------ILRSLKFLCQ----GILEAY 196
+ Q G LL+++ ++ L FL Q + + Y
Sbjct: 192 ADGSPVITQAGFQFLLLETASQVWYFILQYLDTIEARGLDLVECLTFLFQLNFSTLGKDY 251
Query: 197 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFV 253
+ +SE + ++ + GLV Q+ RK F PT+LA N++ +R KEG++
Sbjct: 252 STEGMSEGLSTFLQHLREFGLV-YQRKRKAGRFYPTRLALNIATGQNKPLSRDPEKEGYI 310
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
VVETN+R+YAY+ S L +L LF ++ Y+ PNL+V +T++S+ A ++GITA QI+ +
Sbjct: 311 VVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITAAQIVGY 370
Query: 314 LQQNAHPRVADRIPSV-PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
LQQ+AH ++ + P V P + DQI+LWE++ NR + Y +F S+ FE D+A
Sbjct: 371 LQQHAHGKMIEAGPPVLPPTIVDQIKLWENERNRFIFSEGVLYSQFLSQTDFEVLRDHAL 430
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
L+W++ +K +VV H +++F + +K
Sbjct: 431 STGVLIWQNERKRTIVVTKAGHDDVKKFWKRYSK 464
>gi|48102983|ref|XP_395476.1| PREDICTED: general transcription factor IIH subunit 4 [Apis
mellifera]
Length = 467
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 137/454 (30%), Positives = 233/454 (51%), Gaps = 62/454 (13%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
KN + + S + LNKLY NP IC A+ R LP +AK YV ++L+++ +P + W
Sbjct: 18 CKNLQEYLKSRPSEVLNKLYHNPPICLAVFRELPVIAKHYVMRLLFVEQPVPQAVIASWC 77
Query: 68 LPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGGALPREPMPS 125
F +H+ + L +L +++E + LN+TF+ NL+ L+ GG P
Sbjct: 78 SKLHFEEHQKVVLVLNELNVWNEASIPGGLPGWILNTTFKKNLKIVLLGGGK------PW 131
Query: 126 GITARLPT------LEDLEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK--- 170
++ +L T + L++YA+ +WEC L ++ S Q E + + +MK
Sbjct: 132 TMSNQLETDSKPRDVAFLDSYALERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDE 191
Query: 171 ------VFQRG---LLIQS---------------------ILRSLKFLCQ----GILEAY 196
+ Q G LL+++ ++ L FL Q + + Y
Sbjct: 192 ADGSPVITQAGFQFLLLETASQVWYFILQYLDTIEARGLDLVECLTFLFQLNFSTLGKDY 251
Query: 197 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFV 253
+ +SE + ++ + GLV Q+ RK F PT+LA N++ +R KEG++
Sbjct: 252 STEGMSEGLLTFLQHLREFGLV-YQRKRKAGRFYPTRLALNIATGQNKPLSRDPEKEGYI 310
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
VVETN+R+YAY+ S L +L LF ++ Y+ PNL+V +T++S+ A ++GITA QI+ +
Sbjct: 311 VVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITATQIVGY 370
Query: 314 LQQNAHPRVADRIPSV-PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
LQQ+AH ++ + P + P + DQI+LWE++ NR + Y +F S+ FE D+A
Sbjct: 371 LQQHAHSKMIEAGPPILPPTIVDQIKLWENERNRFIFSEGVLYSQFLSQTDFEVLRDHAL 430
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
L+W+ +K +VV H +++F + +K
Sbjct: 431 STGVLIWQSERKRTMVVTKAGHDDVKKFWKRYSK 464
>gi|62751795|ref|NP_001015845.1| general transcription factor IIH, polypeptide 4, 52kDa [Xenopus
(Silurana) tropicalis]
gi|58475911|gb|AAH90134.1| general transcription factor II H, polypeptide 4 [Xenopus
(Silurana) tropicalis]
gi|89272862|emb|CAJ82116.1| transcription factor tfb2 [Xenopus (Silurana) tropicalis]
gi|114107989|gb|AAI22900.1| gtf2h4 protein [Xenopus (Silurana) tropicalis]
Length = 455
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 136/452 (30%), Positives = 227/452 (50%), Gaps = 51/452 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
+ +V++ KN + + L+ L++LY +P C A+ R LP LAK YV +ML+++ +P
Sbjct: 3 LQRVQLKCKNLHEFLQELSPGVLDQLYNHPATCLAVFRELPGLAKNYVMRMLFLEQPLPQ 62
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGGA- 117
+ WV + F +H+ L LRL+ ++ LN F+ NL+ L+ GG
Sbjct: 63 AAVALWVKKENFKEHEENTQVLTGLRLWHTQQLPGGLQGLILNPIFRENLKIALLGGGKP 122
Query: 118 LPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA------------------- 158
+ G + L+ YA +WE L ++ S A
Sbjct: 123 WADDGCLLGPDKHGKDVVSLDKYAEERWEVILHFMVGSPSAAVSQDLAQLLIQAGLMKSE 182
Query: 159 -----------------ERPTNFSSSMMKVFQ----RGLLIQSILR---SLKFLCQGILE 194
+ P+ M++ + RG+++ IL L F G +
Sbjct: 183 SGEAPCISSAGFQFLLLDTPSQLWYFMLQYLKSAESRGMILVEILSFMFQLSFSTLG--K 240
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGF 252
Y++ +S+ + ++ + GLV Q+ RK + PT+LA NL+ ++ S + K+GF
Sbjct: 241 DYSVEGMSDSLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAINLASGISGSVVDSHKQGF 299
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
+VVETN+R+YAY+ S+L ++ LFS++ Y+ PNL+V +T+E++ A NGITAEQII
Sbjct: 300 IVVETNYRIYAYTDSELQIALIALFSEMLYRFPNLVVAQVTRENVQQAIGNGITAEQIIH 359
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
FL+ AHP + + P +P + DQIRLWE + +R+ + Y +F S+ FE +YAR
Sbjct: 360 FLRTRAHPVMLQQNPVLPPTITDQIRLWELERDRLRFSEGVLYNQFLSQVDFELLRNYAR 419
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
D L++E+ K +VV H ++ F + Q
Sbjct: 420 DLGVLVFENPAKRVMVVTPGGHSDVKRFWKRQ 451
>gi|380014187|ref|XP_003691121.1| PREDICTED: general transcription factor IIH subunit 4-like [Apis
florea]
Length = 467
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 137/454 (30%), Positives = 233/454 (51%), Gaps = 62/454 (13%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
KN + + S + LNKLY NP IC A+ R LP +AK YV ++L+++ +P + W
Sbjct: 18 CKNLQEYLKSRPSEVLNKLYHNPPICLAVFRELPVIAKHYVMRLLFVEQPVPQAVIASWC 77
Query: 68 LPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGGALPREPMPS 125
F +H+ + L +L +++E + LN+TF+ NL+ L+ GG P
Sbjct: 78 SKLHFEEHQKVVLILNELNVWNEASIPGGLPGWILNTTFKKNLKIVLLGGGK------PW 131
Query: 126 GITARLPT------LEDLEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK--- 170
++ +L T + L++YA+ +WEC L ++ S Q E + + +MK
Sbjct: 132 TMSNQLETDSKPRDVAFLDSYALERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDE 191
Query: 171 ------VFQRG---LLIQS---------------------ILRSLKFLCQ----GILEAY 196
+ Q G LL+++ ++ L FL Q + + Y
Sbjct: 192 ADGSPVITQAGFQFLLLETASQVWYFILQYLDTIEARGLDLVECLTFLFQLNFSTLGKDY 251
Query: 197 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFV 253
+ +SE + ++ + GLV Q+ RK F PT+LA N++ +R KEG++
Sbjct: 252 STEGMSEGLLTFLQHLREFGLV-YQRKRKAGRFYPTRLALNIATGQNKPLSRDPEKEGYI 310
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
VVETN+R+YAY+ S L +L LF ++ Y+ PNL+V +T++S+ A ++GITA QI+ +
Sbjct: 311 VVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITATQIVGY 370
Query: 314 LQQNAHPRVADRIPSV-PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
LQQ+AH ++ + P + P + DQI+LWE++ NR + Y +F S+ FE D+A
Sbjct: 371 LQQHAHSKMIEAGPPILPPTIVDQIKLWENERNRFIFSEGVLYSQFLSQTDFEVLRDHAL 430
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
L+W+ +K +VV H +++F + +K
Sbjct: 431 STGVLIWQSERKRTMVVTKAGHDDVKKFWKRYSK 464
>gi|340710070|ref|XP_003393621.1| PREDICTED: general transcription factor IIH subunit 4-like [Bombus
terrestris]
Length = 467
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 138/454 (30%), Positives = 231/454 (50%), Gaps = 62/454 (13%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
KN + + S LNKLY NP IC A+ R LP +AK YV ++L+++ +P + W
Sbjct: 18 CKNLQEYLKSRPPEVLNKLYHNPPICLAVFRELPVIAKHYVMRLLFVEQPVPQAVIASWC 77
Query: 68 LPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGGALPREPMPS 125
F +H+ + L +L ++ E + LN+TF+ NL+ L+ GG P
Sbjct: 78 SKLHFEEHQKVVLILNELNVWKEASIPGGLPGWILNTTFKKNLKIVLLGGGK------PW 131
Query: 126 GITARLPT------LEDLEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK--- 170
++ +L T + L++YA+ +WEC L ++ S Q E + + +MK
Sbjct: 132 TMSNQLETDSKPRDVAFLDSYALERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDE 191
Query: 171 ------VFQRG---LLIQS---------------------ILRSLKFLCQ----GILEAY 196
+ Q G LL+++ ++ L FL Q + + Y
Sbjct: 192 ADGSPVITQAGFQFLLLETASQVWYFILQYLDTIEARGLDLVECLTFLFQLNFSTLGKDY 251
Query: 197 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFV 253
+ +SE + ++ + GLV Q+ RK F PT+LA N++ +R KEG++
Sbjct: 252 STEGMSEGLSTFLQHLREFGLV-YQRKRKAGRFYPTRLALNIATGQNKPLSRDPEKEGYI 310
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
VVETN+R+YAY+ S L +L LF ++ Y+ PNL+V +T++S+ A ++GITA QI+ +
Sbjct: 311 VVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITAAQIVGY 370
Query: 314 LQQNAHPRVADRIPSV-PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
LQQ+AH ++ + P V P + DQI+LWE++ NR Y +F S+ FE D+A
Sbjct: 371 LQQHAHGKMIEAGPPVLPPTIVDQIKLWENERNRFIFNEGVLYSQFLSQTDFEVLRDHAL 430
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
L+W++ +K +VV H +++F + +K
Sbjct: 431 STGVLIWQNERKRTIVVTKAGHDDVKKFWKRYSK 464
>gi|242021693|ref|XP_002431278.1| TFIIH basal transcription factor complex p52 subunit, putative
[Pediculus humanus corporis]
gi|212516535|gb|EEB18540.1| TFIIH basal transcription factor complex p52 subunit, putative
[Pediculus humanus corporis]
Length = 467
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 137/455 (30%), Positives = 236/455 (51%), Gaps = 54/455 (11%)
Query: 3 QVK-IIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAK 61
QVK + K + + +L L +LY +P C A+ R LP +A+ YV ++L+++ +P
Sbjct: 13 QVKNLRCKYLHEYLQTLPLATLEQLYNHPTTCLAVFRELPQIARHYVSRLLFVEQPVPQA 72
Query: 62 TMEEWVLPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGG--- 116
+ W+ +H A L LR++ E + LNS F+ N++ L+ GG
Sbjct: 73 VIASWISQTHSKEHLTATKVLTDLRVWQEAAIPGGLPGWILNSVFKKNMKISLLGGGRPW 132
Query: 117 ALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK 170
+ + P +P L++ YA+ +WEC L ++ S E + +++MK
Sbjct: 133 TMSAQLEPDTKPRDIPYLDN---YAMERWECVLHYMVGSQAQEGISADAVRILLHANLMK 189
Query: 171 ---------VFQRG---LLIQSILRSLKFLCQGI--LEAYNLNTLSEIQ-------RSMI 209
+ + G LL+ + + F+ Q + + A NL+ + + ++
Sbjct: 190 RDEEDGSCVITREGFQFLLLDTASQVWYFMLQYLDTVSARNLDLVECLTFLFQLSFSTLG 249
Query: 210 KDFADLGLVK---------------LQQGRKESWFIPTKLATNLSMSLTDS--SARKEGF 252
KD++ +G+ + Q+ R+ F PT+LA N++ S KEG+
Sbjct: 250 KDYSTIGMSEGLLVFLQHLREFGLIYQRKRRGGRFYPTRLALNIACGENKSLQQMNKEGY 309
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
+++ETN+R+YAY+ S L +L LF ++ Y+ PNL VG IT++S+ AF++GITAEQI+
Sbjct: 310 IIIETNYRVYAYTDSNLQVALLGLFCEMLYRFPNLSVGLITRDSVRQAFKSGITAEQIVG 369
Query: 313 FLQQNAHPR-VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 371
FL+ +AHPR +A P++P V DQI+LWE++LNR+ + Y +F S+ FEA D A
Sbjct: 370 FLRLHAHPRMIAVGPPTLPPTVVDQIKLWENELNRLVYSDGVLYSQFLSQADFEALRDRA 429
Query: 372 RDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+ L+WE+ KK +VV H +++F + +K
Sbjct: 430 NELGVLVWENDKKRTMVVTKSGHDDVKKFWKSYSK 464
>gi|409077631|gb|EKM77996.1| hypothetical protein AGABI1DRAFT_114851 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198975|gb|EKV48900.1| hypothetical protein AGABI2DRAFT_191077 [Agaricus bisporus var.
bisporus H97]
Length = 467
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 137/438 (31%), Positives = 223/438 (50%), Gaps = 59/438 (13%)
Query: 23 LNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRL 82
L +LY+ P C ++ R L PL ++ V +L+++ AI TM WV DG ++ A+ L
Sbjct: 31 LTRLYQRPSSCLSVFRLLAPLERQIVMNLLWLESAIATSTMVAWVQRDGRKLYEEALGNL 90
Query: 83 VQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARL-PTLEDLEAYA 141
+L + K LN TF+++L++ L GG +P+ P+++ L+++A
Sbjct: 91 SRLHILPNSAAK---LALNFTFKTSLRQALTGGGTSGSFGVPAEKDEHSGPSIKTLDSFA 147
Query: 142 IGQWECFLLQLISSAQAERPTNFS---------SSMMKVFQRG----------------- 175
+ +WE L ++SS ++P S SS+M F G
Sbjct: 148 LERWETILHYMVSSGTGQQPAKPSQGVLFLLQRSSLMSSFHGGPLQITSSGFQFLLHSPH 207
Query: 176 -----LLIQ----------SILRSLKFL----CQGILEAYNLNTLSEIQRSMIKDFADLG 216
LL+Q ++ L FL + Y LS Q +++D D G
Sbjct: 208 AQLWDLLLQYLHLAQERQMDLVEVLGFLFMLSTMELGREYLTENLSTTQGVLLEDLRDYG 267
Query: 217 LVKLQQGRKESWFIPTKLATNLSMS-------LTDSSARKEGFVVVETNFRMYAYSTSKL 269
L+ Q K F PT+L T L+ S ++ SS +GF+V+ETN+R+YAY+ + L
Sbjct: 268 LI-WQSKPKSRRFSPTRLGTTLTSSSPPLPTTISASSGPLDGFIVLETNYRIYAYTDNPL 326
Query: 270 HCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSV 329
+L LF ++Y+ PNL+VG IT++S+ A NGITA+QIIS+L +AHP++ P +
Sbjct: 327 QTAVLNLFVSLKYRFPNLVVGMITRDSVRRALMNGITADQIISYLITHAHPQMRKNNPLL 386
Query: 330 PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVV 389
P V DQIRLWE + NR++ + + Y F S+ ++ +YA+ +LWE++ K
Sbjct: 387 PVTVQDQIRLWELEKNRLKSSEGYLYTAFTSQADYDLVLNYAKQLDVVLWENAAKRCFFG 446
Query: 390 NAEIHMHMREFL--RGQN 405
+ E H+ ++EF+ R QN
Sbjct: 447 SLEGHLRIKEFIERRTQN 464
>gi|195999048|ref|XP_002109392.1| hypothetical protein TRIADDRAFT_20428 [Trichoplax adhaerens]
gi|190587516|gb|EDV27558.1| hypothetical protein TRIADDRAFT_20428 [Trichoplax adhaerens]
Length = 452
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 133/430 (30%), Positives = 211/430 (49%), Gaps = 45/430 (10%)
Query: 17 SLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHK 76
SL A L+KLY +P C A R L LAK YV + L+ AIP T+ WV +H+
Sbjct: 18 SLPAIILDKLYNHPAACLATFRELSQLAKHYVMRTLFTIQAIPTSTISAWVNSQHQKEHQ 77
Query: 77 VAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTL 134
A+++L ++R++ +LN +F++NL+ L GG P S T
Sbjct: 78 AALNQLTEIRIWQSHTLPGGMQGIKLNESFRANLKTALCGGGESWYGPQLSKADKYQFTS 137
Query: 135 EDLEAYAIGQWECFLLQLISSAQ--------------------------------AERPT 162
E L+ + +WEC L L+ + + +RP+
Sbjct: 138 EALDLKSKERWECVLHYLVGAGEDLALSGEIQSLLNNCGLVSKNGITAAGFQFLLLDRPS 197
Query: 163 NFSSSMMKVFQRG-LLIQSILRSLKFLCQ----GILEAYNLNTLSEIQRSMIKDFADLGL 217
+++ L ++ L FL Q + Y+ L++ Q + ++ ++GL
Sbjct: 198 QVWYILLQYLDSAESLGMDLVEILSFLFQLSYSTFGQNYSTEGLTQTQLTCLQHMREIGL 257
Query: 218 VKLQQGRKESWFIPTKLATNLSMSLTD---SSARKEGFVVVETNFRMYAYSTSKLHCEIL 274
V +Q+ RK+ F PT+LA NL+ ++ G+++VETN+R+YAY+ S L ++
Sbjct: 258 V-VQRKRKDMKFYPTQLAINLASGAKQEELDHSKSSGYIIVETNYRLYAYTESPLDIALV 316
Query: 275 RLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI--PSVPEN 332
LF ++ Y+LP L VG IT+ES+ AF NGITA +II+F++ +AHP ++ P VP
Sbjct: 317 ALFCEMMYRLPGLCVGLITRESVQQAFTNGITANKIINFIRTHAHPEAKKKVTTPIVPST 376
Query: 333 VCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAE 392
+ DQ+ LWE + R+ + Y + S FEA YA D LLW K LVVN +
Sbjct: 377 IIDQLYLWELERGRLSCSDGVLYNQILSSSDFEALRKYADDMGVLLWASPAKRLLVVNRD 436
Query: 393 IHMHMREFLR 402
H H++ F +
Sbjct: 437 GHNHVKHFWK 446
>gi|327266348|ref|XP_003217968.1| PREDICTED: general transcription factor IIH subunit 4-like [Anolis
carolinensis]
Length = 460
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 138/451 (30%), Positives = 227/451 (50%), Gaps = 48/451 (10%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
+ +V + KN + + L+ L++LY +P C A+ R LP LAK YV +ML ++ +P
Sbjct: 7 LQKVHLKCKNLHEFLRGLSPGVLDRLYNHPATCLAVFRELPGLAKNYVMRMLLLEQPLPQ 66
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-A 117
+ WV + + + + D L+ LRL+ ++ LN F+ NL+ L+ GG A
Sbjct: 67 AAVASWVKKEYTKEQEESSDILLGLRLWHKQLLPGGLQGIVLNPIFKENLRVALLGGGKA 126
Query: 118 LPREPMPSGITARLPTLEDLEAYAIGQWECFL---------------------LQLISSA 156
+ G + L+ YA +WE L L+ S+
Sbjct: 127 WSDDTSQLGPDKHARDVPSLDKYAEERWEVILDFMVGSPSAAVSQDLAQLLTEAGLMKSS 186
Query: 157 QAERPTNFSSS----------------MMKVFQ----RGLLIQSILRSLKFLCQGIL-EA 195
+ P +SS M++ Q RG+ + IL L L L +
Sbjct: 187 EPGEPPCITSSGFQFLLLDTSSQLWYFMLQYLQSAETRGMDLVEILSFLFQLSFSTLGKD 246
Query: 196 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSS--ARKEGFV 253
Y++ +SE + ++ + GLV Q+ RK + PT+LA NLS ++ + R +GF+
Sbjct: 247 YSVEGMSESLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGISGITIDTRNQGFI 305
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
+VETN+R+YAY+ S+L ++ LFS++ Y+ PNL+V +T+ES+ A NGITA+QII F
Sbjct: 306 IVETNYRIYAYTDSELQIALIALFSEMLYRFPNLVVAQVTRESVQQAIANGITADQIIHF 365
Query: 314 LQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARD 373
L+ AHP + + P +P + DQIRLWE + +R+ + Y +F S+ FE D+AR+
Sbjct: 366 LRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFSEGVLYNQFLSQVDFELLRDHARE 425
Query: 374 RSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
L++E+ K +VV H ++ F + Q
Sbjct: 426 LGVLIFENPSKRLMVVTPAGHSDVKRFWKRQ 456
>gi|255079788|ref|XP_002503474.1| predicted protein [Micromonas sp. RCC299]
gi|226518741|gb|ACO64732.1| predicted protein [Micromonas sp. RCC299]
Length = 458
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 134/462 (29%), Positives = 225/462 (48%), Gaps = 75/462 (16%)
Query: 7 IAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEW 66
+ F+ ++ +++R +N LY++P+ C ++LRSLP LAK YV ++LY+D I + M+ W
Sbjct: 1 MGSAFVGFLSDMSSRQINHLYQSPWACLSVLRSLPSLAKHYVMRLLYVDEGIAREEMDAW 60
Query: 67 VLP--DGFTKHKVAIDRLVQLRLFSEEKKKETT------YRLNSTFQSNLQKHL------ 112
V P + +H ++ L +LR+ +E RLN F ++ +
Sbjct: 61 VRPGKEHRDRHARSMLALKRLRVLVPAGDQEYVADGKELVRLNRRFVKGVRAQIETCFAP 120
Query: 113 ----INGGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPT------ 162
+ P + M + P+ E +E +A G+WE L+ L + + P
Sbjct: 121 EGDEVEATVAPDDAM----GGKRPSPEKIEEFAKGRWEALLMTLTGRDRRKGPGLDVAAL 176
Query: 163 ----------NFSSSMMKVFQRGL-------------LIQSILRS--------------- 184
+ S+ + ++G L+ +R
Sbjct: 177 FRGAGLVAEKSNKSNGWGITEKGFRFLLSTAREQIWTLLTEYVRQYSAPGDRTLVAPAVI 236
Query: 185 ---LKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQG-RKESWFIPTKLATNLSM 240
L+ Q + + Y ++ L QR++ +D A LGL+ L G KE +++PT+L +
Sbjct: 237 GFMLRLTFQAVGQPYRVDDLPSAQRAIAEDLAHLGLLYLFAGPGKEGYYVPTQLTAGKDV 296
Query: 241 SLTDSSARKE--GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 298
+ D+S + G ++ ETNFR+YAY+ S + CEILRLF++ +Y+LPNL VG +T+E+++
Sbjct: 297 ADGDASLGGDPGGHIIAETNFRVYAYTFSDVECEILRLFTRPDYRLPNLYVGMLTREAVH 356
Query: 299 NAFENGITAEQIISFLQQNAHP--RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYE 356
A + G+ AEQII +++ +AHP R +P NV DQI LW + RV Y
Sbjct: 357 EALDTGVAAEQIIKYIKSHAHPNARKTTNGSGIPPNVADQIMLWAMERRRVRSAECVLYC 416
Query: 357 EFPS-RDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHM 397
+FP+ D + AA A D LLWE+ ++M+L V H M
Sbjct: 417 DFPTGTDEYAAAVKAASDAGVLLWENREQMKLAVAKSGHERM 458
>gi|410911638|ref|XP_003969297.1| PREDICTED: general transcription factor IIH subunit 4-like
[Takifugu rubripes]
Length = 465
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 136/459 (29%), Positives = 219/459 (47%), Gaps = 58/459 (12%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
V++ KN + L+ L++LY +P C A+ R LP LAK +V +ML++D +P
Sbjct: 4 HVQLQCKNLHQYLKELSPDILDRLYNHPATCLAVYRELPSLAKNFVMRMLFLDQPLPQAA 63
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKET--TYRLNSTFQSNLQKHLINGG-ALP 119
+ WV D H + L LRL+ + + Y LN F+ NL+ L+ GG A
Sbjct: 64 VSLWVNKDNQKDHDECVSVLAGLRLWHSQHLQGGLQGYILNPVFKDNLKIALLGGGRAWA 123
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISS--------------------AQAE 159
E G + L+ YA +WE L ++ S ++A
Sbjct: 124 DEGGTLGPDRHARDIGSLDRYATERWEVILHFMVGSPCAAVSQDLAQLLVHAGLMKSEAG 183
Query: 160 RPTNFSSSMMKVF--------------------QRGLLIQSILRSLKFLCQGIL-EAYNL 198
P +S+ + RG+ + IL L L L Y++
Sbjct: 184 EPPYITSAGFQFLLLDTASQLWYFTLQYLKTAQSRGMDLVEILSFLFQLSFSTLGRDYSV 243
Query: 199 NTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSS------------ 246
+S+ + ++ + GLV Q+ RK + PT+LA L+ + SS
Sbjct: 244 EGMSDSLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAITLATGDSSSSLHTPTASLASTP 302
Query: 247 -ARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGI 305
+ GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A NGI
Sbjct: 303 GSGDSGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFPNVVVAQVTRESVQQAIANGI 362
Query: 306 TAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFE 365
TA+QII FL+ AHP + + P +P + DQIRLWE + +R++ T Y +F S+ FE
Sbjct: 363 TAQQIIHFLRTRAHPVMLRQTPFLPPTITDQIRLWELERDRLQFTEGVLYNQFLSQTDFE 422
Query: 366 AACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
D A+ L+W+D+ +VV H +++F + Q
Sbjct: 423 VLRDRAKSLGCLVWQDAAHRVMVVTLWGHSEVKKFWKRQ 461
>gi|392564310|gb|EIW57488.1| transcription factor Tfb2 [Trametes versicolor FP-101664 SS1]
Length = 477
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 128/434 (29%), Positives = 216/434 (49%), Gaps = 59/434 (13%)
Query: 23 LNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRL 82
L +LY+ P C +I R L PL ++ V +L++D IP TM WV +G ++ A+ L
Sbjct: 39 LTRLYQKPSACLSIFRLLRPLERQLVMNLLWLDLPIPPSTMAAWVTREGKKPYQDALSTL 98
Query: 83 VQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREP--MPSGITARLPTLEDLEAY 140
+L + K + LN TF+S L++ + GG + + P ++ L+ Y
Sbjct: 99 ARLHILPPSTSKHS---LNPTFKSGLRQAITGGGTSGSFGVLIENDDKNPPPEIDALDGY 155
Query: 141 AIGQWECFLLQLISSAQAERPTNFSSSMMKVFQR-GLLIQSILRSLKFLCQG-------- 191
A+ +WE L ++SS E P+ S ++ + +R GL+ + +L+ G
Sbjct: 156 ALERWETILYYMVSSGTGEFPSQPSKGVLYLLERSGLMARVHSGALQITSGGFQFLLHPP 215
Query: 192 ------------------------------------ILEAYNLNTLSEIQRSMIKDFADL 215
+ + Y+ LS Q++M+ D D
Sbjct: 216 HVQLWELLLQYLQMAEERQMDLVEVISFLLMLSTTELGKNYSTENLSPTQKTMLDDLRDY 275
Query: 216 GLVKLQQGRKESWFIPTKLATNLSMSL--------TDSSARKEGFVVVETNFRMYAYSTS 267
GL+K Q+ F PT+LAT L+ S + + +GF+V+ETN+R+YAY+ +
Sbjct: 276 GLIK-QRTPTSRRFSPTRLATTLTSSSPPLPTSAGSGDGSHAQGFIVLETNYRLYAYTDN 334
Query: 268 KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIP 327
L +L LF ++ + PNL++GAIT++S+ A +GITA+QIIS+L +AHP++ P
Sbjct: 335 PLQIAVLNLFVTLKSRFPNLVIGAITRDSVKKALASGITADQIISYLVTHAHPQMRKNQP 394
Query: 328 SVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRL 387
+P V DQIRLWE + NR++ + Y F S+ +E +YA+ +LWE++ +
Sbjct: 395 LLPVTVQDQIRLWELEKNRMKSQEGYLYTAFASQADYEYVLNYAKQLDVVLWENASRRCF 454
Query: 388 VVNAEIHMHMREFL 401
+ E H ++R F+
Sbjct: 455 FGSVEGHANIRGFI 468
>gi|328766914|gb|EGF76966.1| hypothetical protein BATDEDRAFT_92242 [Batrachochytrium
dendrobatidis JAM81]
Length = 471
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 132/455 (29%), Positives = 217/455 (47%), Gaps = 58/455 (12%)
Query: 7 IAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEW 66
I+ N + SL L++L+ P C AILR LP LAK + ++LY + +E W
Sbjct: 9 ISGNVGQYLESLPRPVLDRLFAQPATCLAILRLLPDLAKHTILRLLYTSMTVKISDIETW 68
Query: 67 VLPDGFTKHKVAIDRLVQLRLFS-EEKKKETTYRLNSTFQSNLQKHLINGGALPREPMP- 124
+ + A+ L +L + S + + + +NS FQ ++ L+ G+ MP
Sbjct: 69 ETHEYSGQFSHAVTGLAKLHILSIKNEGSHKSVHINSVFQKSIHNALVGSGSHTSFGMPC 128
Query: 125 SGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERP------------------TNFSS 166
I P++ LE YA WE L L+ + +RP TN +
Sbjct: 129 ETIDKHRPSIAFLETYAKECWESVLHYLVGTPSDKRPKAIVKLLEKSGLMAPISSTNAAH 188
Query: 167 SM-MKVFQRGL--LIQSI----------------------LRSLKFLCQ-GILEA---YN 197
+ +++ +G L+Q + + L F Q G LE Y+
Sbjct: 189 NGDLRITSKGFQFLLQDVNVQIWAFLLQYLEMAEQLNMELVEVLNFFFQLGSLELGQDYS 248
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSS--------ARK 249
+ L+ Q+ M+ D LGL+ Q+ +K + F PT LAT+L+ + + A
Sbjct: 249 VEVLTPTQKHMLDDLKHLGLI-YQRKKKSTRFYPTHLATSLTSGASAGAVLSPRSLEADS 307
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
+GF+++ETN+R+YAY+ S L +L LF ++ + N+++G IT++S+ A GI+AEQ
Sbjct: 308 DGFIIIETNYRVYAYTDSPLQIAVLSLFIEMRVRFANMVIGIITRDSVREALAKGISAEQ 367
Query: 310 IISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 369
II++L +AHP + P +P + DQ+RLWE + NR+ ++ H Y+ F +
Sbjct: 368 IIAYLTTHAHPEMKKGSPVLPTTIVDQVRLWEMERNRLRISRGHLYQMFSGEQEYREILK 427
Query: 370 YARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
YA D LW K +VV+AE H H++ F Q
Sbjct: 428 YATDLGYELWHSDSKRLVVVSAEGHEHIKVFFSKQ 462
>gi|221120480|ref|XP_002159945.1| PREDICTED: general transcription factor IIH subunit 4-like [Hydra
magnipapillata]
Length = 458
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 128/435 (29%), Positives = 218/435 (50%), Gaps = 51/435 (11%)
Query: 17 SLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHK 76
+L+ LN LY +PF C A+ R LP LAK Y+ + L+ + ++ + W + H
Sbjct: 21 TLSPSSLNALYNDPFTCLAVFRGLPELAKHYIMRTLFTNQSLSDAFVLSWCKKEWAKDHI 80
Query: 77 VAIDRLVQLRLFS--EEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTL 134
A+++L L ++ E Y N TFQ+NL+ L GG + P+ + +
Sbjct: 81 EAVNKLKGLHIWVSFEIGTPMLRYEFNITFQTNLRIGLCGGGPVQATPLKAVEEKHARDV 140
Query: 135 EDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVF-QRGLLI--------------- 178
L+ Y+ +WEC +L ++ +Q S + +V GLLI
Sbjct: 141 AFLDNYSKERWEC-ILYYMTGSQVTGNAGVSQDVARVLINAGLLIFDHQEQATCITSSGF 199
Query: 179 ------------------------QSILRSLKFLCQGILEA----YNLNTLSEIQRSMIK 210
+ +++ L FL Q Y +N L+E Q S ++
Sbjct: 200 QFLLLDTSSQVWYFMVQHLNSMEPEILVQCLSFLFQTSFSVLGKDYPVNDLTEAQFSFLQ 259
Query: 211 DFADLGLVKLQQGRKESWFIPTKLATNLSMSLT---DSSARKEGFVVVETNFRMYAYSTS 267
++GL Q+ RK F PT+LA NL ++T DSS++++GF+VVETN+R+YAY+ S
Sbjct: 260 LLREIGLA-FQRKRKSKRFYPTRLAINLGSAVTGNSDSSSQQQGFLVVETNYRVYAYTDS 318
Query: 268 KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIP 327
LH +L LF+ I+ + P+ V +++ES+ A GI+AEQII FL+ AH ++ P
Sbjct: 319 VLHIALLSLFTDIKARFPSFTVALLSRESVQQALACGISAEQIIDFLKTRAHSQMTTSSP 378
Query: 328 SVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRL 387
+ + DQI+LWE + +R+ + Y +F S+ FE +A +++ LLW +++K +
Sbjct: 379 IIASTITDQIKLWEMERDRLRYSQGVLYNQFLSQSDFEMLRKFADEKNHLLWANNQKRLM 438
Query: 388 VVNAEIHMHMREFLR 402
VV+ H ++++ +
Sbjct: 439 VVSKSGHEDVKKYWK 453
>gi|409048320|gb|EKM57798.1| hypothetical protein PHACADRAFT_171015 [Phanerochaete carnosa
HHB-10118-sp]
Length = 472
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 139/450 (30%), Positives = 229/450 (50%), Gaps = 66/450 (14%)
Query: 11 FMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
+ + S + L +LY+ P C +I R L PL ++ V +L+++ +IPA TM WV +
Sbjct: 22 LLAFLQSQSQNTLTRLYQRPSSCLSIFRLLGPLERQIVMNLLWLESSIPASTMATWVPHE 81
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITAR 130
++ ++ L +L + + K LN TF+++L+ +I GG+ +P+ +
Sbjct: 82 VRKTYENSLSILSRLHILPQSAVK---LALNPTFKTSLRHAIIGGGSSGSFGVPATRDEK 138
Query: 131 L--PTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSI------L 182
P++E L+AYA+ +WE L ++SS A RP S ++ + QR L+ SI +
Sbjct: 139 HSSPSIEVLDAYALERWETILHYMVSSGIATRP---SQGVLFLLQRSGLMASIHGGSLQI 195
Query: 183 RSLKF----------LCQGILE-----------------------------AYNLNTLSE 203
SL F L + +L+ Y++ LS
Sbjct: 196 TSLGFQFLLHSPHAQLWELLLQYLHMVEERQMDLVEVLSFLFMLSTMELGREYSVEHLSP 255
Query: 204 IQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL--------TDSSARKEGFVVV 255
Q +M++D D G++ Q+ F PT+LAT L+ S +SA +GF+++
Sbjct: 256 TQTAMLEDLRDYGII-WQRRATSKRFCPTRLATTLTSSSPPLPAAGGVSASAHGQGFIIL 314
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE----QII 311
ETN+R+YAY+ + L +L LF ++ + PNL+VGAIT+ES+ A NGITA+ QII
Sbjct: 315 ETNYRLYAYTDNPLQIAVLNLFVTLKSRYPNLVVGAITRESVKKALTNGITADQASRQII 374
Query: 312 SFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 371
S+L +AHP++ P +P V DQIRLWE + NR++ + Y F S+ +E +YA
Sbjct: 375 SYLTTHAHPQMRKNKPLLPVTVQDQIRLWELEKNRMKSQEGYLYTAFASQADYEYVLNYA 434
Query: 372 RDRSGLLWEDSKKMRLVVNAEIHMHMREFL 401
+ +LWE S + E H ++R F+
Sbjct: 435 KQLGVVLWESSGRRCFFGTLEGHPNIRGFI 464
>gi|307212060|gb|EFN87943.1| General transcription factor IIH subunit 4 [Harpegnathos saltator]
Length = 467
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 137/454 (30%), Positives = 228/454 (50%), Gaps = 62/454 (13%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
KN + + S LNKLY P IC A+ R LP +AK YV ++L+++ +P + W
Sbjct: 18 CKNLHEYLKSRPPDILNKLYHKPPICLAVFRELPIIAKHYVMRLLFVEQPVPQAVIASWC 77
Query: 68 LPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGGALPREPMPS 125
F +H+ + L +L ++ E + LN+TF+ NL+ L+ GG P
Sbjct: 78 SKLYFEEHQKVVQILNELYVWKEASIPGGLPGWILNNTFKKNLKIVLLGGGR------PW 131
Query: 126 GITARLPT------LEDLEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK--- 170
++ +L T + L++YA+ +WEC L ++ S Q E + + +MK
Sbjct: 132 TMSNQLETDSKPRDVAFLDSYALERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDE 191
Query: 171 ------VFQRG---LLIQS---------------------ILRSLKFLCQ----GILEAY 196
+ Q G LL+ + ++ L FL Q + + Y
Sbjct: 192 TDGSPIITQAGFQFLLLDTASQVWYFILQYLDTIEARGLDLIECLTFLFQLNFSTLGKDY 251
Query: 197 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFV 253
+ +SE + ++ + GLV Q+ RK F PT+LA N++ T R KEG++
Sbjct: 252 STEGMSEGLLTFLQHLREFGLV-YQRKRKAGRFYPTRLALNIATGETKPLTRDTDKEGYI 310
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
VVETN+R+YAY+ S L +L LF ++ Y+ PNL+V +T++S+ A ++GITA QI+ +
Sbjct: 311 VVETNYRVYAYTNSNLQVALLGLFCEMIYRFPNLVVSILTRDSVRQALKSGITATQIVGY 370
Query: 314 LQQNAHPRVADRIPSV-PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
LQQ+AH + + P + P + DQI LWE++ NR + Y +F S+ FE D+A
Sbjct: 371 LQQHAHSKTIEAGPPILPPTIVDQIMLWENERNRFLFSEGVLYSQFLSQTDFEVLRDHAL 430
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
L+W++ +K +VV H +++F + +K
Sbjct: 431 TTGVLIWQNERKRTIVVTKAGHDDIKKFWKRYSK 464
>gi|307177222|gb|EFN66420.1| General transcription factor IIH subunit 4 [Camponotus floridanus]
Length = 467
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 134/454 (29%), Positives = 229/454 (50%), Gaps = 62/454 (13%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
KN + + S ++ LNKLY P IC A+ R LP +AK YV ++L+++ +P + W
Sbjct: 18 CKNLHEYLKSRSSDILNKLYHKPPICLAVFRELPIIAKHYVMRLLFVEQPVPQAVIASWC 77
Query: 68 LPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGGALPREPMPS 125
F +H+ + L L ++ E + LN+ F+ NL+ L+ GG P
Sbjct: 78 SKLYFEEHQKVVQVLNDLYVWKEASIPGGLPGWILNNIFKKNLKIVLLGGGK------PW 131
Query: 126 GITARLPT------LEDLEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK--- 170
++ +L T + L++YA+ +WEC L ++ S Q E + + +MK
Sbjct: 132 TMSNQLETDSKPRDVAFLDSYALERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDE 191
Query: 171 ------VFQRG---LLIQS---------------------ILRSLKFLCQ----GILEAY 196
+ Q G LL+ + ++ L FL Q + + Y
Sbjct: 192 ADGSPIITQAGFQFLLLDTASQVWYFILQYLDTIEARGLDLVECLTFLFQLNFSTLGKDY 251
Query: 197 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFV 253
+ +SE + ++ + GLV Q+ RK F PT+LA N++ A+ KEG++
Sbjct: 252 STEGMSEGLLTFLQHLREFGLV-YQRKRKAGRFYPTRLALNIATGENKPLAKDTDKEGYI 310
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
VVETN+R+YAY+ S L +L LF ++ Y+ PN++V +T++S+ A ++GITA QI+ +
Sbjct: 311 VVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNVVVSILTRDSIRQALKSGITASQIVGY 370
Query: 314 LQQNAHPRVADRIPSV-PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
LQQ+ H ++ +R P + P + DQI+LWE++ NR + Y +F S+ FE D+A
Sbjct: 371 LQQHVHSKMIERGPPILPPTIVDQIKLWENERNRFLFSEGVLYSQFLSQTDFEVLRDHAL 430
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
L+W+ +K +VV H +++F + +K
Sbjct: 431 STGVLIWQSERKRTMVVTKTGHDDVKKFWKRYSK 464
>gi|348683175|gb|EGZ22990.1| hypothetical protein PHYSODRAFT_479459 [Phytophthora sojae]
Length = 490
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 145/496 (29%), Positives = 237/496 (47%), Gaps = 117/496 (23%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDG 71
D + +L L +LY++P+ C+AI ++LPPLA+++V ++L + A+P +E+WV+P+
Sbjct: 4 FDFLETLPPATLERLYQDPWACQAIFQALPPLAQQFVMRLLPSNAAVPRSLLEQWVVPEP 63
Query: 72 FTKHKV------AIDRLVQLRLFSEEKKKETTYRLNSTFQSNL--QKHLIN------GGA 117
+++ A+ +L L++F + + YR + TFQ L +K L+ GG+
Sbjct: 64 GDANRMPPQFHAALHKLEGLKVFVHQ---DGAYRPHPTFQKQLMVEKWLLTYALSNLGGS 120
Query: 118 --------LPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMM 169
LP++P + A DLE YA +W+ L ++ S + P S++
Sbjct: 121 PWERGRLQLPKDPENTFAAA------DLERYARARWDSVLHYMVGSTAVQEPPQ---SVV 171
Query: 170 KVFQRGLLIQS--------------------------------ILRSL------------ 185
+ R L+Q+ +R+L
Sbjct: 172 DILLRTRLLQASGADSRALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDIL 231
Query: 186 KFL-----CQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL-- 238
+FL CQ E Y + L+E QR ++ DF D GL+ ++ + F T LA NL
Sbjct: 232 QFLFQISYCQ-TGEYYAVADLTETQRLLLGDFIDFGLLFRKRPNSDR-FYTTSLAVNLIF 289
Query: 239 ---------SMSLTDSSA---------------------RKEGFVVVETNFRMYAYSTSK 268
+SLT S A + VVVETNF++YAY+TS
Sbjct: 290 GGSTGQKRSHVSLTSSFAGVRAGLKSQVADPRQAPTADHSAQLLVVVETNFKIYAYTTST 349
Query: 269 LHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPS 328
LH +L +F I +LPNL +G IT+ESL +A +GI+A+QI FL ++AHP++ P
Sbjct: 350 LHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMRRNSPV 409
Query: 329 VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLV 388
+PEN+ DQI LWE + NRV+ ++ F +++ +E+ DYA+D L W D RL
Sbjct: 410 IPENIADQIYLWERERNRVQFMEGILFDGFNTKEDYESVRDYAKDLKVLTWSDPIHFRLS 469
Query: 389 VNAEIHMHMREFLRGQ 404
+ +R +++ Q
Sbjct: 470 ITTAGIDDVRHYIQSQ 485
>gi|91094191|ref|XP_971121.1| PREDICTED: similar to TFIIH basal transcription factor complex p52
subunit [Tribolium castaneum]
gi|270010854|gb|EFA07302.1| hypothetical protein TcasGA2_TC015892 [Tribolium castaneum]
Length = 472
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 132/455 (29%), Positives = 228/455 (50%), Gaps = 61/455 (13%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
KN D + + ++ L KLY +P IC A+ R LP LA++YV ++L+++ +P + W
Sbjct: 21 CKNLYDYLKTRSSATLEKLYNHPTICLAVYRELPELARQYVIRILFVEQPVPQAVVASWG 80
Query: 68 LPDGFTKHKVAIDR-LVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGGALPREPMP 124
F+K V + + L +L ++ E + L+ TF+ NL+ L+ GG
Sbjct: 81 -AQAFSKEHVYVSKVLSELSVWQEAAIPGGLLGWILSVTFKKNLKIALLGGGKPWSMSSA 139
Query: 125 SGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK-------- 170
+ ++ + L+AY++ +WEC L ++ S Q E + + +MK
Sbjct: 140 LEVDSKARDVSFLDAYSLERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDEEDGSP 199
Query: 171 ----------------------------VFQRGLLIQSILRSLKFLCQ----GILEAYNL 198
V QRGL S++ L FL Q + + Y+
Sbjct: 200 VITRQGFQFLLLDRQAQVWHFLLQYLDTVEQRGL---SLVECLTFLFQLSFSTLGKDYST 256
Query: 199 NTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE-----GFV 253
+S ++ + GLV Q+ RK F PT+LA N++ S + E G++
Sbjct: 257 EGMSPGLLIFLQHLREFGLV-YQRKRKAGRFYPTRLALNITCSQGPETRILEEDTPKGYI 315
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
+VETN+R+YAY+ S L ++ LF+++ Y+ PNL+VG IT++S+ A + GITA+QII +
Sbjct: 316 IVETNYRVYAYTDSNLQVALIGLFTELMYRFPNLVVGVITRDSIRQALKGGITADQIIGY 375
Query: 314 LQQNAHPRV--ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 371
L+Q+AHP++ + +P V DQI+LWE + NR+ + Y +F S+ F +YA
Sbjct: 376 LKQHAHPQMLEGEAKHPLPPTVVDQIKLWEIERNRLTYSEGVLYSQFLSQADFNILKEYA 435
Query: 372 RDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+ L+W + +K L++N H +++F + +K
Sbjct: 436 QSNGHLIWCNKEKRTLIINKSAHDDVKKFWKRYSK 470
>gi|403417620|emb|CCM04320.1| predicted protein [Fibroporia radiculosa]
Length = 472
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 131/452 (28%), Positives = 221/452 (48%), Gaps = 71/452 (15%)
Query: 11 FMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
+ + S + L +LY+ P C ++ R L PL ++ V +L+++ A+P TM WV +
Sbjct: 23 LLTFLQSQSQNALTRLYQRPSSCLSVFRLLQPLQRQLVMNLLWLETAVPVSTMFAWVTRE 82
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGA-----LPREP--- 122
G + + ++ L +L + K LN TF+++L++ + GG+ +P +P
Sbjct: 83 GRSVYSDSLSTLARLHILPSSPVK---LALNPTFKASLRQAVTGGGSSRSFGVPVDPDRQ 139
Query: 123 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQR-GLLIQSI 181
P+ P + L+AYA+ +WE L ++SS PT S ++ + QR GL+ +
Sbjct: 140 YPA------PNINTLDAYALERWETILHYMVSSGTGHYPTRPSQEVLFLLQRSGLMTNAH 193
Query: 182 LRSLKFLCQG--------------------------------------------ILEAYN 197
+L+ G + Y+
Sbjct: 194 GGALQITSSGFQFLLHSPHAQLWELLVQYLYMVEERQMDLVDVLSFLLMLSTMELGREYS 253
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL--------TDSSARK 249
L+ Q +M+ D + GLV QQ F P++LAT L+ S + +
Sbjct: 254 TENLTATQTAMLTDLRNYGLV-WQQSPSSRRFSPSRLATTLTSSSSPLPTSQNSGTGPHG 312
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
EGF+V+ETN+R+YAY+ + L +L LF ++ + PNL++GAIT+ES+ A NGITA+Q
Sbjct: 313 EGFIVLETNYRIYAYTDNPLQIAVLNLFVTLKSRFPNLVIGAITRESVKKALANGITADQ 372
Query: 310 IISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 369
IIS+L +AHP++ P +P V DQIRLWE + NRV+ + Y F S+ +E +
Sbjct: 373 IISYLTAHAHPQMHKNKPLLPVTVQDQIRLWELERNRVKSEEGYLYTSFASQADYEYVLN 432
Query: 370 YARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 401
YA+ +LWE+ + + + H ++R F+
Sbjct: 433 YAKQLDVVLWENPSRRSFFGSLDGHANIRGFI 464
>gi|353240543|emb|CCA72408.1| probable TFB2-TFIIH subunit (transcription/repair factor)
[Piriformospora indica DSM 11827]
Length = 462
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 125/449 (27%), Positives = 222/449 (49%), Gaps = 63/449 (14%)
Query: 11 FMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
+D + S T L +LY P C AI+R L PL ++ V +L+++G + +++ W+ +
Sbjct: 13 LIDFLHSQTPTTLQRLYTRPSACLAIIRLLSPLERQLVMSLLWLEGPVETQSITNWITLE 72
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPM---PSGI 127
G + ++ A+ L +L++ K++ L ++F+S L+ L G + P
Sbjct: 73 GRSAYEHALKSLAKLQILPNSKEQ---ILLQASFKSGLRNGLTGSGQVASFGALVEPDND 129
Query: 128 TARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRG------------ 175
LPT E L+ YA+ +W+ L +++S + S ++ + +
Sbjct: 130 MGTLPT-EMLDNYAVERWDTILHFMVTSGTEQASARPSEGVLYLLEHSGLMSNEHGRRII 188
Query: 176 ------LLIQS--------ILRSLKFLCQ-------GIL------------EAYNLNTLS 202
L+QS IL L+ + + IL + Y+ +TLS
Sbjct: 189 TSAGFQFLLQSPHAQLWEFILSYLRMMAEREDMDMVDILGFFFMLSMTQPGQHYSTHTLS 248
Query: 203 EIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS----------MSLTDSSARKEGF 252
Q M+ D D GLV S F PT+ AT L+ +++ + + + F
Sbjct: 249 PTQLIMVSDLRDFGLVYFPSDTTTS-FQPTRFATTLTSYTSSFSDHDLTIENGADLSQEF 307
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
VV+ETN+ +YAY+ + L +L LF + + PN+I+G++T++S+ A NGITA+QI+S
Sbjct: 308 VVLETNYHVYAYTNNPLQIAVLNLFVSFKARFPNMIMGSLTRDSVKKALVNGITADQILS 367
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
+L +AHP++ P +P V DQIRLWE + +RV+ + Y+EF S + +E YAR
Sbjct: 368 YLVTHAHPQMRKNNPIIPVTVQDQIRLWELERHRVKGQDGYLYKEFASMNDYEVVVQYAR 427
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFL 401
+ +LWE++ + +A +H+R ++
Sbjct: 428 ELGVVLWENASRRMFFADAAGRVHIRSYI 456
>gi|338718559|ref|XP_003363845.1| PREDICTED: general transcription factor IIH subunit 4 [Equus
caballus]
Length = 463
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/450 (29%), Positives = 221/450 (49%), Gaps = 48/450 (10%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + SL+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 12 RVHLQCRNLQEFLGSLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 71
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 72 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRIALLGGGKAWS 131
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA--------------------- 158
+ G + L+ YA +WE L ++ S A
Sbjct: 132 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEP 191
Query: 159 ----------------ERPTNFSSSMMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYN 197
+ P M++ Q RG+ + IL L L L + Y+
Sbjct: 192 GEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYS 251
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVV 255
+ +S+ + ++ + GLV Q+ RK + PT+LA NLS +S +A + GF+VV
Sbjct: 252 VEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVV 310
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 311 ETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLR 370
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
AHP + + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+
Sbjct: 371 TRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELG 430
Query: 376 GLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
L++E+S K +VV H ++ F + Q
Sbjct: 431 VLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|442757633|gb|JAA70975.1| Putative rna polymer [Ixodes ricinus]
Length = 459
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 224/457 (49%), Gaps = 65/457 (14%)
Query: 2 PQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAK 61
P + + + +L+ L++LY +P C A+ R LP +++ Y+ +++++D +P
Sbjct: 6 PSSSLKCNDLHAYLKTLSPATLDQLYTHPATCLAVFRELPIISRHYIMRLMFVDQPVPQA 65
Query: 62 TMEEWVLPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGGALP 119
+ W +H +++ L L ++++ + L+ F+ N+Q L+ GG
Sbjct: 66 VVSSWNEQKYVKEHLESLEALTALHIWADSSLPGGLPGWSLSVVFRKNIQIALLGGG--- 122
Query: 120 REPMPSGITARLPT------LEDLEAYAIGQWECFLLQLIS-------SAQAERPTNFSS 166
P + + L + L+ YA+ +WEC L ++ SA A R +
Sbjct: 123 ---QPWAVYSTLEKDKHGRDAQFLDRYAMERWECVLHFMVGCHTKEGISADAVRILLHAG 179
Query: 167 SM-------------MKVFQ-----------------------RGL-LIQ--SILRSLKF 187
M M+ FQ RGL L++ + L L F
Sbjct: 180 LMKSEEEEGSAPLITMEGFQFLLMDTASQVWHFVLQYLDTLESRGLNLVECLTFLFQLSF 239
Query: 188 LCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA 247
L G + Y+ +SE ++ + GLV Q+ R+ F PT+LA NL+ L +++
Sbjct: 240 LTLG--KDYSTEGMSESLLVFLQHLREFGLV-YQRKRRSGRFYPTRLAINLASGLKETNL 296
Query: 248 R--KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGI 305
R + G++VVETN+R+YAY+ S+L +L LF ++ Y+LPNL+VG +T+ES+ A +GI
Sbjct: 297 RSYESGYIVVETNYRVYAYTDSQLQVALLALFCELMYRLPNLVVGVLTRESVRQALRSGI 356
Query: 306 TAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFE 365
T+ QII FLQ +AHP + P +P + DQ+RLWE + +R Y +F S+ F+
Sbjct: 357 TSNQIIKFLQMHAHPEAQKQSPVIPPTIMDQLRLWELERDRFNFREGVLYSQFISQSDFQ 416
Query: 366 AACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+YA D L+W++ K +VVN H ++ F +
Sbjct: 417 LLRNYASDLGVLIWDNPSKRVMVVNRNGHDEVKRFWK 453
>gi|301098671|ref|XP_002898428.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
gi|262105199|gb|EEY63251.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
Length = 483
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 144/489 (29%), Positives = 228/489 (46%), Gaps = 110/489 (22%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLP-D 70
D + +L L +LY++P+ C+AI ++LP LA+++V ++L + A+P +E+WV+P
Sbjct: 4 FDFLETLPPATLERLYQDPWACQAIFQALPSLAQQFVMRLLPTNSAVPRDLLEQWVVPIP 63
Query: 71 GFTKH-----KVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGA-------- 117
G TK A+ +L LR+F ++ + Y+ + TFQ L L N G
Sbjct: 64 GETKRMPPQFNAALQKLEGLRVFVQQ---DGGYKPHPTFQKQLMYALSNLGGSPWERGRL 120
Query: 118 -LPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGL 176
LPR+P + DLE YA +W+ L ++ S + P S++ + R
Sbjct: 121 HLPRDPENTFAAV------DLERYARARWDLVLHYMVGSTAVQEPPQ---SVVDILLRTK 171
Query: 177 LIQS--------------------------------ILRSL------------KFL---- 188
L+Q+ +R+L +FL
Sbjct: 172 LLQASGADSRALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQIS 231
Query: 189 -CQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL--------- 238
CQ Y + L+E QR ++ DF D GL+ ++ + F T LA NL
Sbjct: 232 YCQ-TGGYYAVADLTETQRLLLGDFIDFGLL-FRKRQNSDRFYTTSLAVNLIFGGSTGQK 289
Query: 239 --SMSLTDSSARKEG---------------------FVVVETNFRMYAYSTSKLHCEILR 275
+SLT S A VVVETNF++YAY++S LH +L
Sbjct: 290 RSHVSLTSSFAGVRAGMKSQVADPRQAPTVDHGARLLVVVETNFKIYAYTSSTLHVAMLS 349
Query: 276 LFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCD 335
+F I +LPNL +G IT+ESL +A +GI+A+QI FL ++AHP++ P +PEN+ D
Sbjct: 350 VFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMRRNSPVIPENIAD 409
Query: 336 QIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHM 395
QI LWE + NRV+ ++ F +++ +E+ DYA+ L W D RL +
Sbjct: 410 QIYLWERERNRVQFLEGILFDGFNTKEDYESVRDYAKGLMVLTWSDPIHFRLSIATAGID 469
Query: 396 HMREFLRGQ 404
+R F++ Q
Sbjct: 470 EVRHFIQNQ 478
>gi|343428936|emb|CBQ72481.1| probable TFB2-TFIIH subunit (transcription/repair factor)
[Sporisorium reilianum SRZ2]
Length = 493
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/437 (30%), Positives = 217/437 (49%), Gaps = 58/437 (13%)
Query: 23 LNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRL 82
L +LYE P C AI R LP +A++ + ML++D + A W+ + A+D+L
Sbjct: 54 LIRLYEKPASCLAIFRLLPMMARQLIMHMLFLDVPLAADDFMAWIKKEARKDFDAAVDKL 113
Query: 83 VQLRLFS-EEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPT-LEDLEAY 140
+L + + + LN+ F +++ L GG +P + + L+ Y
Sbjct: 114 SRLSIVQLKTTAAKQILLLNAVFTDGMRRALTGGGKHRSFGVPCDTEDKNAVDVAFLDEY 173
Query: 141 AIGQWECFLLQLISSAQAERPTN------FSSSMMK--------------VFQRG----- 175
A +WE L ++ S + P S++M+ + RG
Sbjct: 174 ARTKWETILHYMVGSDNSSTPREPVLYLLRRSNLMQPRSTSTSSSSGGLNITSRGFQFLL 233
Query: 176 ---------LLIQ----------SILRSLKFLCQ-GILE---AYNLNTLSEIQRSMIKDF 212
LL+Q ++ L FL G LE Y+ L E Q M++DF
Sbjct: 234 EDVNTQLWDLLLQYLDMAEERNMDLVEVLAFLFMLGSLELGRDYSTEELPETQLHMLEDF 293
Query: 213 ADLGLVKLQQGRKESWFIPTKLATNLSMS-----LTDSSARKE--GFVVVETNFRMYAYS 265
D GLV Q+ F PT+LAT L+ S L+ + +E G++++ETN+R+YAY+
Sbjct: 294 RDYGLV-YQRKASSRRFYPTRLATTLTSSAAVPLLSSNGTEQEERGYIILETNYRLYAYT 352
Query: 266 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 325
+++L +L LF I+ + PNL+VG+IT++S+ +A NGITAEQII++L +AH ++
Sbjct: 353 SNRLRVAVLSLFVTIKARFPNLVVGSITRDSVKSALANGITAEQIITYLTHHAHVQMHRN 412
Query: 326 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 385
P +P V DQIRLWE + NRV+ + +F S+ FE +YA+ L+WED K
Sbjct: 413 DPLLPVTVSDQIRLWEREKNRVQQNLGSLFTDFTSQFDFEEVRNYAKQLGVLVWEDEGKR 472
Query: 386 RLVVNAEIHMHMREFLR 402
R V+ ++ +R+++R
Sbjct: 473 RFFVDEAGNVPVRDYIR 489
>gi|198428509|ref|XP_002131018.1| PREDICTED: similar to General transcription factor II H,
polypeptide 4 [Ciona intestinalis]
Length = 463
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 139/463 (30%), Positives = 223/463 (48%), Gaps = 70/463 (15%)
Query: 4 VKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTM 63
VK+ + + SL L+ LYE+P C A+ R LP LAK Y+ ++L+++ I +
Sbjct: 7 VKLKRLGLHEYLCSLPPAILDSLYEHPATCMAVFRELPELAKYYIMRILFVEQPISKAAV 66
Query: 64 EEWVLPDGFTKHKVAIDRLVQLRLFSE---EKKKETTYRLNSTFQSNLQKHLINGGALPR 120
WV + H A+ + LR++ E + T + ++S F+ NLQK L+ GG
Sbjct: 67 SAWVKVNAKQDHNEAVKSMCSLRVWMESNLQGSASTAFIMSSIFRRNLQKALVGGG---- 122
Query: 121 EPMPS----GITARLPTLEDLEAYAIGQWECFLLQLISSAQ------------------- 157
EP S G +E L+ YA +WE L L+ S
Sbjct: 123 EPWSSTAHLGPDKHGKDIESLDKYASERWEMLLHYLVGSETNSTISQDIKDLINQAGLMK 182
Query: 158 --AERPTNFSSSMMKVFQ-----------------------RGLLIQSILR---SLKFLC 189
+E ++S K FQ RG+ + ILR L F
Sbjct: 183 QGSEGGRSYSIITAKGFQFLLLDNASQVWYFVLEYLDWVRERGMNLVPILRFIFELSFSS 242
Query: 190 QGILEAYNLNTLSEIQRSMI--KDFADLGLVKLQQGRKESWFIPTKLATNLS----MSLT 243
G +L T +I + F ++GLV +Q+ RK F PT LA NL+ S+T
Sbjct: 243 PG----KDLPTDGRDDHVLICLQHFREMGLV-MQRKRKSRRFYPTYLAINLANRANASVT 297
Query: 244 DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFEN 303
+ + + GF++ ETNFR+YAY+ S+L IL LF K+ Y+ PN+ V +T++S+ +A N
Sbjct: 298 NVTNSR-GFILAETNFRVYAYTDSELQYSILSLFCKMLYRFPNVCVLQLTRKSIQSAVVN 356
Query: 304 GITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDV 363
GITA+QI+ +++ NAHP + P + + DQ+RLW + +R+ Y +F ++
Sbjct: 357 GITADQILHYIKANAHPDMLKNDPIIAPTLADQVRLWAMERDRLTYRDGVLYNQFLAQKD 416
Query: 364 FEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
FE +YA++ L+WE+S K +VV + H ++ + + K
Sbjct: 417 FEVLRNYAKELGALIWENSSKRYMVVTKDGHDQVKRYWKKYKK 459
>gi|170120252|ref|XP_001891159.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164633568|gb|EDQ98188.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 475
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 132/454 (29%), Positives = 227/454 (50%), Gaps = 64/454 (14%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
A + + S + L KLY P C +I R L P++++ + +L+++ AIPA TM+ WV
Sbjct: 19 AHALLPFLQSQSQNTLTKLYSKPSSCLSIFRLLDPISRQLIMNLLWLESAIPASTMQAWV 78
Query: 68 LPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGI 127
+G + A+ L +L +F K TF+++ ++ + GG +PS
Sbjct: 79 TREGKPVYTEALATLTKLHIFPNSAIKLAVV---PTFKTSFRQAITGGGTSGSFGVPSEK 135
Query: 128 TARLPT--LEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRS- 184
+ +E L+ +A+ +WE L ++SS + PT S ++ + QR L+ ++ +
Sbjct: 136 DDKRSDVDIEFLDVFALERWETILHYMVSSGSGQNPTKPSVRVLFLLQRSGLMTTVGQGP 195
Query: 185 -------LKFLCQ----------------------------GIL---------EAYNLNT 200
+FL G L Y+
Sbjct: 196 LQITSAGFQFLLHSPHEQLWELLLQYLHLTEERQMDLVDVLGFLFMLSTMELGREYSTER 255
Query: 201 LSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS-------LTDSSARKEGFV 253
LS+ Q +M++D D GL+ ++ + F PT+LAT L+ S + + S +EGF+
Sbjct: 256 LSKTQTAMLEDLVDYGLIWRRKPSSKG-FHPTRLATTLTSSSPPLPSSIGNRSGPQEGFI 314
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
V+ETN+R+YAY+ + L IL LF ++Y+ PNL+VGAIT++S+ A NGI+A+QIIS+
Sbjct: 315 VLETNYRIYAYTDNPLQTAILNLFVSLKYRFPNLVVGAITRDSVKKALLNGISADQIISY 374
Query: 314 LQQNAHPRVADRI------PSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAA 367
L +AHP++ + P +P V DQIRLWE + NR++ + Y F S+ ++
Sbjct: 375 LMSHAHPQMRKNVRLRSCNPLLPVTVQDQIRLWELEKNRLKSQEGYLYTSFASQADYDFV 434
Query: 368 CDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 401
+YA++ +LWE+ K + + H ++R F+
Sbjct: 435 LNYAKELGVVLWENPVKRCFFGSLDGHANIRGFI 468
>gi|402224480|gb|EJU04542.1| transcription factor Tfb2 [Dacryopinax sp. DJM-731 SS1]
Length = 466
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/441 (30%), Positives = 217/441 (49%), Gaps = 65/441 (14%)
Query: 23 LNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLP--DGFTKHKVAID 80
L++LY P C A+ R L +A++ V +L++D + WV+P D + A+
Sbjct: 25 LSRLYTRPSACLAVFRLLDDVARQIVMSLLWLDSKTGVD-LTAWVVPNEDSRKHYAAALQ 83
Query: 81 RLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPR--EPMPSGITARLPTLEDLE 138
LV+L + E + L FQS L++ L GG P P + E L+
Sbjct: 84 DLVRLHIAKEANGR---ILLLPAFQSGLRRALTGGGEHRSFGVPCPGARGKEVMATEQLD 140
Query: 139 AYAIGQWECFLLQLISS-AQAERPTNFSSSMMKVFQRGLLIQSI-----------LRSLK 186
YA +WE L ++SS + A R S +++ + +R L+ I + +
Sbjct: 141 DYASERWESILHFMVSSGSSAGRVPPPSIAVIFLLRRSGLMVPIGAERHPESRITSKGFQ 200
Query: 187 FLCQ----------------------------GIL---------EAYNLNTLSEIQRSMI 209
FL + G L + Y+ LSE Q M+
Sbjct: 201 FLLEDSHTQLWELLLQYLAMSEDQGRDLVEVIGFLFMLGSMQLGQEYSTENLSETQDVML 260
Query: 210 KDFADLGLVKLQQGRKESWFIPTKLATNL----SMSLTDS----SARKEGFVVVETNFRM 261
+DF D GL+ + + F PT+LAT L S++ T S +A EGF+++ETN+R+
Sbjct: 261 QDFLDYGLIYRRNPDDHTRFYPTRLATTLTSTSSLAFTSSKHEKAASSEGFIILETNYRV 320
Query: 262 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR 321
YAY+ + L +L LF + + NL++G +T+ES+ A NGITA+QIIS+L +AHP
Sbjct: 321 YAYTENPLQIAVLNLFVALHSRFENLVIGRLTRESIKAALANGITADQIISYLTVHAHPM 380
Query: 322 VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWED 381
+ P +P V DQIRLW+ + NR++ + YE+F S+ F+ +YA+ +LWE+
Sbjct: 381 MHKNNPVLPVTVQDQIRLWQLEKNRLKSENGYLYEDFNSQGDFDLVLNYAKQLDVVLWEN 440
Query: 382 SKKMRLVVNAEIHMHMREFLR 402
+K ++ V + H ++REF+R
Sbjct: 441 REKRKMFVREDGHENVREFIR 461
>gi|307106040|gb|EFN54287.1| hypothetical protein CHLNCDRAFT_25123 [Chlorella variabilis]
Length = 458
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/446 (30%), Positives = 215/446 (48%), Gaps = 61/446 (13%)
Query: 14 MVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA--KTM-EEWVLPD 70
+ S+ L +L+ P+ AILRSLPPLA+ + ++ G +PA +T+ + W D
Sbjct: 9 ITTSVRGEQLERLFVQPYAVVAILRSLPPLARHMLLRLASTAGTVPAGKRTLADSWATSD 68
Query: 71 GFTKHKVAIDRLVQLRLFSEE-KKKETTYRLNSTFQSNLQK------------------- 110
G +K A+ L +L L ++E + TY +N+ FQ+ L++
Sbjct: 69 GSSKLSAALCELAELGLLAKEPHDGQVTYTVNAGFQAQLRRTMCSGCACPLPGHPAAPVP 128
Query: 111 ------------------HLINGGALP--REPMPSGITARLPTLEDLEAYAIGQWECFLL 150
+L+NG P P+ +P+L + EC L
Sbjct: 129 SAAELDAYARRQWEALLLYLVNGNGTPPMAPPVLHATPIDIPSLLAAAGLMVKD-ECTLE 187
Query: 151 QLISSAQAE-RPTNFSSSMMKVFQRGL----------LIQSILRSLKFLCQGILEAYNLN 199
Q I+ + N S + ++ L L +I L+ QG A +
Sbjct: 188 QKITEHGFQFLLANLYSQLWSAVRQYLTLLNTAGGADLAVAINFLLRLGLQGAAAAMAHS 247
Query: 200 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFVVVE 256
L +R++ LGL+ G E W PT+LA L+ A +EG+V+VE
Sbjct: 248 QLDSAERTIAAHMCQLGLLMPVPGANELWLHPTRLAAVLAGGGRAGEAAVAPEEGYVIVE 307
Query: 257 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 316
+NFR+YAY+TS + +LR+F + + LPNL VG IT+ES NA + GI A+Q+++FL+Q
Sbjct: 308 SNFRVYAYTTSAVQVAVLRVFVRCDALLPNLFVGTITRESATNALDTGIAADQVVAFLRQ 367
Query: 317 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 376
+AHPR A + P+V V DQIRLW +L R++ A Y++F S++++ A +AR +
Sbjct: 368 HAHPRAAAKTPTV---VTDQIRLWAQELKRLQEKNATLYDKFESKELYVGAVAHARQLNA 424
Query: 377 LLWEDSKKMRLVVNAEIHMHMREFLR 402
LL+ + +LVV + H M L+
Sbjct: 425 LLYSCEDRRQLVVESAFHGLMVGHLK 450
>gi|290987279|ref|XP_002676350.1| predicted protein [Naegleria gruberi]
gi|284089952|gb|EFC43606.1| predicted protein [Naegleria gruberi]
Length = 532
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 146/511 (28%), Positives = 234/511 (45%), Gaps = 117/511 (22%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQML--------------- 52
+ N + +LT +LN LY + + C+A+ R LP +AK+YV +ML
Sbjct: 22 SDNIFSYLLTLTPDELNLLYGHTWTCKAVFRFLPDIAKQYVMRMLLCGSINSQQIAMDIP 81
Query: 53 --------YIDGAIPAKTME---EWVLPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLN 101
Y+D K E E +L + H+ A +L++ R+ S K + + LN
Sbjct: 82 KKLTNLSGYLDSNGAKKGREQDQEAILQEVRDAHENAFSQLLKYRIIS--KTSNSDFTLN 139
Query: 102 STFQSNLQK--------------HLINGGALPREPMPSGITARLPTLED----------- 136
FQ + H + +EP S + LE
Sbjct: 140 RYFQDTFRNLVTSVPSAQAPTTSHSSSHKRKEQEPETSISEENMDELEPKKKKRKKHKTK 199
Query: 137 ------LEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQS------ILRS 184
L+ Y+ +WE LL L+ +A AE FS ++ ++ + LI+
Sbjct: 200 EIGAEFLQEYSKRKWENVLLYLVGTA-AESEQTFSGNVNELLKYSQLIKKSDTVRITNEG 258
Query: 185 LKFLCQ----------------------------------GILEA---YNLNTLSEIQRS 207
+FL Q G L+ Y+ L+ Q+S
Sbjct: 259 FQFLLQETKVQVWKLLKHYLETSGQRNQVKNEILNFIFELGFLDVGKEYSSKDLTSTQKS 318
Query: 208 MIKDFADLGLVKLQQGRKES----WFIPTKLATNLSMSLTDS----------SARKEGFV 253
++ DF DLG++ L + +K+ +F PT LA +L++S++ S ++ G++
Sbjct: 319 LLVDFNDLGIIYLHRDKKKKIKDKYFFPTPLAKSLTVSMSTSYDLISSFGSHNSINNGYI 378
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
+VETN+R+YAY+ S L +L LF EY+LPN++VG IT+ ++ A +NGI+A QI+ F
Sbjct: 379 IVETNYRVYAYTNSPLQIALLSLFIFPEYRLPNMVVGLITRSTIREALKNGISAHQILQF 438
Query: 314 LQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARD 373
L+ NAHP++ + P +P+ V DQI LWE + NRV T + Y++F + A DYAR
Sbjct: 439 LRLNAHPQMRLKKPVIPDTVSDQILLWEKERNRVIKTTSVVYDKFTNVSELNATVDYARR 498
Query: 374 RSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
+ LLW +KM +V E H M+EF+ Q
Sbjct: 499 QGALLWHSEEKMMMVCKREFHGLMKEFISSQ 529
>gi|302684027|ref|XP_003031694.1| hypothetical protein SCHCODRAFT_15746 [Schizophyllum commune H4-8]
gi|300105387|gb|EFI96791.1| hypothetical protein SCHCODRAFT_15746 [Schizophyllum commune H4-8]
Length = 476
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/468 (28%), Positives = 221/468 (47%), Gaps = 80/468 (17%)
Query: 7 IAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEW 66
+ + + + S L +LY+ P C +I R L PL ++ V +L+++ A+P TM W
Sbjct: 9 VPHSLLPFLQSQPQNTLARLYQRPSSCLSIFRLLGPLERQIVMNLLWLESAVPVSTMGAW 68
Query: 67 VLPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGG-----ALPRE 121
V+ + ++ A++ L +L + K ++ TF+S+L++ L GG +P E
Sbjct: 69 VVREHQKIYEAALETLGKLHIVPTSPVK---LAVHPTFKSSLRQALTGGGTQGSFGIPAE 125
Query: 122 PMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQS- 180
P + P + L+ YA+ +WE L ++SS + ++ + + + L++S
Sbjct: 126 P---DGKQQAPDVGKLDGYALERWETILHFMVSSGTGQESAQPAAGVTYLLKESGLMESR 182
Query: 181 ---------------------------------------ILRSLKFL--------CQGIL 193
++ L FL QG L
Sbjct: 183 GGTLRITSAGFQFLLLTPHAQLWELLIHYLRLQEANNIDLVEVLSFLFMVSTTEFGQGNL 242
Query: 194 EA--------YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL--- 242
E Y+ LS Q ++ D GL+ Q+ + F PT+LAT L+ S
Sbjct: 243 EMLTGDLHQEYSTENLSTSQLVVMDDLRHYGLL-WQRKKNYPRFSPTRLATTLTSSAPPL 301
Query: 243 ----TDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 298
+S KEGF+V+ETN+R+YAY+ + L +L LF +Y+ PNL+VG+IT+ES+
Sbjct: 302 PTSSGPTSGPKEGFIVLETNYRVYAYTDNALQTAVLNLFITPKYRFPNLVVGSITRESVK 361
Query: 299 NAFENGITAEQIISFLQQNAHPRVADRI-----PSVPENVCDQIRLWESDLNRVEMTPAH 353
A NGITA+QIIS+L +AHP++ + P +P V DQIRLWE + NR +
Sbjct: 362 RAMSNGITADQIISYLITHAHPQMHKNVCLVANPLLPVTVQDQIRLWELERNRTKSQEGF 421
Query: 354 YYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 401
Y EF S+ +E +YA+ +LWE+ K E H +++ F+
Sbjct: 422 LYTEFASQADYEYVLNYAKQLGVVLWENHAKRCFFAAQEGHANIKSFI 469
>gi|391335225|ref|XP_003741996.1| PREDICTED: general transcription factor IIH subunit 4-like
[Metaseiulus occidentalis]
Length = 457
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 138/461 (29%), Positives = 224/461 (48%), Gaps = 67/461 (14%)
Query: 4 VKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTM 63
V I ++ + + +L + LN+LY++P C AI R LPPLA++YV ++L+I A+P +
Sbjct: 3 VGIQYRDLISYLRTLESAVLNQLYKHPATCLAIFRRLPPLARQYVIRLLHIRQAVPQAVI 62
Query: 64 EEWVLPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGGALPRE 121
W P+ H + D L+ LRL+ E ++LN TFQ L++ L GG
Sbjct: 63 NSWYDPEAARDHTSSEDALLSLRLWHETTLPGGLPGWQLNPTFQEMLRQALAGGGD---- 118
Query: 122 PMPSGITARLPTLED------LEAYAIGQWECFLLQLISS-------------------- 155
P + L + L+ YA +W+C L ++ S
Sbjct: 119 --PWIVYGELDKDKHGRDTKFLDQYAQERWDCVLHYMVGSEVESGISQDAVRILLHSGLM 176
Query: 156 -AQAERPTNFSSSMMKVFQ-----------------------RGLLIQSILR---SLKFL 188
+ + P + + M+ FQ RG+ + L+ L FL
Sbjct: 177 KKEDDSPNSKNLITMEGFQFLLMDTEDQVWYFILQYLSTVETRGVSLVDCLQFIFQLSFL 236
Query: 189 CQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR 248
G + Y++ +SE ++ + GLV Q+ RK F PT+LA L+ L + A
Sbjct: 237 TLG--KDYSIKGVSENLLVFLQHLREFGLV-YQRKRKSGRFYPTRLAIGLASGLKELQAT 293
Query: 249 KE--GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGIT 306
K+ G+++VETN+R+YAY+ S L +L LF ++ Y+ PNL+V +T+ES+ A + GIT
Sbjct: 294 KDEQGYIIVETNYRVYAYTDSPLQVALLSLFCELLYRFPNLLVAVLTRESVRQALKGGIT 353
Query: 307 AEQIISFLQQNAHPRVADRIPS-VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFE 365
+ QI FL+ +H V +R +P V DQ+RLWE + +R + + Y +F + FE
Sbjct: 354 SNQITHFLKSRSHRVVLEREEGIIPMTVTDQLRLWELERDRFKFGESVLYSQFQTTGDFE 413
Query: 366 AACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+YARD L +E+ +K LVV+ +R+F + K
Sbjct: 414 MLRNYARDIGVLKYENPQKRFLVVSKSGDAEVRQFWKRHKK 454
>gi|156378083|ref|XP_001630974.1| predicted protein [Nematostella vectensis]
gi|156218005|gb|EDO38911.1| predicted protein [Nematostella vectensis]
Length = 471
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 135/456 (29%), Positives = 225/456 (49%), Gaps = 64/456 (14%)
Query: 9 KNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVL 68
K+ + ++ L L++L+ +P C + R LP LAK +V + L+ D +P + WV
Sbjct: 20 KDLYEYLSGLPVGILDRLFCHPATCLTVFRELPELAKHFVMRTLFADQPVPESIVSTWVK 79
Query: 69 PDGFTKHKVAIDRLVQLRLFSE-EKKKETTYRLNSTFQSNLQKHLINGGAL---PREPMP 124
+ + +++ L QLR++ E Y +N+TF++N++ L GG + +
Sbjct: 80 SAYYKYNIGSLNTLKQLRIWREVPSGVHKRYEMNATFRTNMKAALCGGGKSWMGSTQHLG 139
Query: 125 SGITARLPTLEDLEAYAIGQWECFLLQLISSAQ-AERPTNFSSSMMKV------------ 171
R P L+ YAI +WE L + S + A+ S ++KV
Sbjct: 140 PDKHTREPDF--LDKYAIERWESVLHFMTGSTEMADNAGGVSQDVVKVLVLSGLMKCESP 197
Query: 172 ----------FQ-----------------------RGL-LIQ--SILRSLKFLCQGILEA 195
FQ RG+ L++ S+L L F G +
Sbjct: 198 GSNPIISPAGFQFLLLDRPSQVWYFMLQCLETVEARGMDLVECLSLLFQLSFSSPG--KD 255
Query: 196 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-----MSLTDSSARKE 250
Y + L++ Q ++ ++GLV Q+ RK + PTKL+ NL+ ++ TDS +
Sbjct: 256 YPTDGLTDSQMKFLQQLREIGLV-FQRKRKSRRYYPTKLSVNLTAAGKGINTTDSQI-EA 313
Query: 251 GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQI 310
GF+++ETN+R+YAY+ S L ++ LF +I + PNL V ++T+ES A +GI+AEQI
Sbjct: 314 GFIIIETNYRVYAYTESCLQVSLIGLFCEILCRFPNLCVASLTRESCQQALASGISAEQI 373
Query: 311 ISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 370
++FLQ AHP + R P +P + DQ+RLWE + +R++ T Y +F S+ FE Y
Sbjct: 374 LNFLQTRAHPEMLKRTPIIPSTISDQVRLWEMERSRMKFTEGVLYNQFLSQADFEMLRKY 433
Query: 371 ARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
A D L+W +S K +VV+ H ++ F + Q +
Sbjct: 434 AEDLGVLIWANSTKRVVVVSRSGHDDVKRFWKRQRQ 469
>gi|281337500|gb|EFB13084.1| hypothetical protein PANDA_018954 [Ailuropoda melanoleuca]
Length = 463
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 135/450 (30%), Positives = 226/450 (50%), Gaps = 48/450 (10%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 12 RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 71
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 72 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 131
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFL---------------LQLIS------SAQA 158
+ G + L+ YA +WE L QL+S SA+
Sbjct: 132 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSAEP 191
Query: 159 ERPTNFSSS----------------MMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYN 197
P +S+ M++ Q RG+ + IL L L L + Y+
Sbjct: 192 GEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYS 251
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVV 255
+ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + +A + GF+VV
Sbjct: 252 VEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVV 310
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 311 ETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLR 370
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
AHP + + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+
Sbjct: 371 TRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELG 430
Query: 376 GLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
L++E+S K +VV H ++ F + Q
Sbjct: 431 VLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|426250586|ref|XP_004019016.1| PREDICTED: general transcription factor IIH subunit 4 [Ovis aries]
Length = 463
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 135/450 (30%), Positives = 226/450 (50%), Gaps = 48/450 (10%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 12 RVHLQCRNLQEFLGGLSPGILDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 71
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 72 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 131
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFL---------------LQLIS------SAQA 158
+ G + L+ YA +WE L QL+S SA+
Sbjct: 132 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSAEP 191
Query: 159 ERPTNFSSS----------------MMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYN 197
P +S+ M++ Q RG+ + IL L L L + Y+
Sbjct: 192 GEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYS 251
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVV 255
+ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + +A + GF+VV
Sbjct: 252 VEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVV 310
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 311 ETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLR 370
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
AHP + + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+
Sbjct: 371 TRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELG 430
Query: 376 GLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
L++E+S K +VV H ++ F + Q
Sbjct: 431 VLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|344307658|ref|XP_003422497.1| PREDICTED: general transcription factor IIH subunit 4 [Loxodonta
africana]
Length = 463
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 134/450 (29%), Positives = 226/450 (50%), Gaps = 48/450 (10%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 12 RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 71
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 72 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 131
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFL---------------LQLIS------SAQA 158
+ G + L+ YA +WE L QL+S SA+
Sbjct: 132 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSAEP 191
Query: 159 ERPTNFSSS----------------MMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYN 197
P +S+ M++ Q RG+ + IL L L L + Y+
Sbjct: 192 GEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYS 251
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVV 255
+ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + +A + GF++V
Sbjct: 252 VEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIIV 310
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 311 ETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLR 370
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
AHP + + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+
Sbjct: 371 TRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELG 430
Query: 376 GLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
L++E+S K +VV H ++ F + Q
Sbjct: 431 VLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|395831929|ref|XP_003789035.1| PREDICTED: general transcription factor IIH subunit 4 [Otolemur
garnettii]
Length = 463
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 131/450 (29%), Positives = 220/450 (48%), Gaps = 48/450 (10%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + SL+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 12 RVHLQCRNLQEFLGSLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 71
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 72 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 131
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA--------------------- 158
+ G + L+ YA +WE L ++ S A
Sbjct: 132 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEP 191
Query: 159 ----------------ERPTNFSSSMMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYN 197
+ P M++ Q RG+ + IL L L L + Y+
Sbjct: 192 GEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYS 251
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVV 255
+ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VV
Sbjct: 252 VEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVV 310
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 311 ETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLR 370
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
AHP + + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+
Sbjct: 371 TRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELG 430
Query: 376 GLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
L++E+S K +VV H ++ F + Q
Sbjct: 431 VLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|178056954|ref|NP_001116592.1| general transcription factor IIH subunit 4 [Sus scrofa]
gi|41529162|dbj|BAD08424.1| general transcription factor IIH, polypeptide 4 [Sus scrofa]
gi|47496805|dbj|BAD08426.2| general transcription factor IIH, polypeptide 4 [Sus scrofa]
Length = 463
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 135/450 (30%), Positives = 225/450 (50%), Gaps = 48/450 (10%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 12 RVHLQCRNLQEFLGGLSPVVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 71
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 72 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 131
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFL---------------LQLIS------SAQA 158
+ G + L+ YA +WE L QL+S SA+
Sbjct: 132 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSAEP 191
Query: 159 ERPTNFSSS----------------MMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYN 197
P +S+ M++ Q RG+ + IL L L L + Y+
Sbjct: 192 GEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYS 251
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVV 255
+ +S+ + ++ +LGLV Q+ RK + PT+LA NLS ++ + + GF+VV
Sbjct: 252 VEGMSDSLLNFLQHLRELGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVV 310
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 311 ETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLR 370
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
AHP + + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+
Sbjct: 371 TRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELG 430
Query: 376 GLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
L++E+S K +VV H ++ F + Q
Sbjct: 431 VLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|155371845|ref|NP_001094527.1| general transcription factor IIH subunit 4 [Bos taurus]
gi|148878127|gb|AAI46241.1| GTF2H4 protein [Bos taurus]
gi|296474219|tpg|DAA16334.1| TPA: general transcription factor IIH, polypeptide 4, 52kDa [Bos
taurus]
Length = 463
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 137/452 (30%), Positives = 225/452 (49%), Gaps = 52/452 (11%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 12 RVHLQCRNLQEFLGGLSPGILDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 71
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 72 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 131
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFL---------------LQLIS------SAQA 158
+ G + L+ YA +WE L QL+S SA+
Sbjct: 132 DDTSQLGPDKHARDVLSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSAEP 191
Query: 159 ERPTNFSSS----------------MMKVFQ----RGL---LIQSILRSLKFLCQGILEA 195
P +S+ M++ Q RG+ I S L L F G +
Sbjct: 192 GEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLG--KD 249
Query: 196 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFV 253
Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS +S +A + GF+
Sbjct: 250 YSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFI 308
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII F
Sbjct: 309 VVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHF 368
Query: 314 LQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARD 373
L+ AHP + + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+
Sbjct: 369 LRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARE 428
Query: 374 RSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
L++E+S K +VV H ++ F + Q
Sbjct: 429 LGVLMFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|417401351|gb|JAA47565.1| Putative rna polymer [Desmodus rotundus]
Length = 463
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 132/444 (29%), Positives = 221/444 (49%), Gaps = 48/444 (10%)
Query: 9 KNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVL 68
+N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P + WV
Sbjct: 18 RNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKSWVMRMLFLEQPLPQAAVALWVK 77
Query: 69 PDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALPREPMPS 125
+ + + L LR++ + LN F+ NL+ L+ GG A +
Sbjct: 78 KEFSKAQEESTGLLSSLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDTSQL 137
Query: 126 GITARLPTLEDLEAYAIGQWECFL---------------------LQLISSAQAERPTNF 164
G + L+ YA +WE L L+ SA+ P
Sbjct: 138 GPDKHTRDVPSLDKYAEERWEVVLHFMVGSPDAAVSQDLAQLLIQAGLMKSAEPGEPPCI 197
Query: 165 SSS----------------MMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYNLNTLSE 203
+S+ M++ Q RG+ + IL L L L + Y++ +S+
Sbjct: 198 TSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSD 257
Query: 204 IQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRM 261
+ ++ + GLV Q+ RK + PT+LA NLS ++ + +A + GF+VVETN+R+
Sbjct: 258 SLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNYRL 316
Query: 262 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR 321
YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP
Sbjct: 317 YAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPV 376
Query: 322 VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWED 381
+ + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+
Sbjct: 377 MLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFEN 436
Query: 382 SKKMRLVVNAEIHMHMREFLRGQN 405
S K +VV H ++ F + Q
Sbjct: 437 SAKRLMVVTPAGHGDVKRFWKRQK 460
>gi|440896165|gb|ELR48176.1| General transcription factor IIH subunit 4 [Bos grunniens mutus]
Length = 463
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 136/450 (30%), Positives = 225/450 (50%), Gaps = 48/450 (10%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 12 RVHLQCRNLQEFLGGLSPGILDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 71
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 72 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 131
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFL---------------LQLIS------SAQA 158
+ G + L+ YA +WE L QL+S SA+
Sbjct: 132 DDTSQLGPDKHARDVLSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSAEP 191
Query: 159 ERPTNFSSS----------------MMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYN 197
P +S+ M++ Q RG+ + IL L L L + Y+
Sbjct: 192 GEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYS 251
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVV 255
+ +S+ + ++ + GLV Q+ RK + PT+LA NLS +S +A + GF+VV
Sbjct: 252 VEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVV 310
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 311 ETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLR 370
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
AHP + + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+
Sbjct: 371 TRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELG 430
Query: 376 GLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
L++E+S K +VV H ++ F + Q
Sbjct: 431 VLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|410958682|ref|XP_003985944.1| PREDICTED: general transcription factor IIH subunit 4 [Felis catus]
Length = 463
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 131/450 (29%), Positives = 221/450 (49%), Gaps = 48/450 (10%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 12 RVHLQCRNLQEFLGGLSPGILDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 71
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 72 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 131
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA--------------------- 158
+ G + L+ YA +WE L ++ S A
Sbjct: 132 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEP 191
Query: 159 ----------------ERPTNFSSSMMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYN 197
+ P M++ Q RG+ + IL L L L + Y+
Sbjct: 192 GEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYS 251
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVV 255
+ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + +A + GF+VV
Sbjct: 252 VEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVV 310
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 311 ETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLR 370
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
AHP + + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+
Sbjct: 371 TRAHPVMLKQSPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELG 430
Query: 376 GLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
L++E+S K +VV H ++ F + Q
Sbjct: 431 VLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|330797174|ref|XP_003286637.1| hypothetical protein DICPUDRAFT_31198 [Dictyostelium purpureum]
gi|325083385|gb|EGC36839.1| hypothetical protein DICPUDRAFT_31198 [Dictyostelium purpureum]
Length = 471
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 136/467 (29%), Positives = 226/467 (48%), Gaps = 85/467 (18%)
Query: 15 VASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTK 74
+ +L ARDL LY++ + C+AI+RSLPP AK+Y+F+ML +D P ++W +
Sbjct: 7 LTTLDARDLEDLYKDSWTCQAIVRSLPPRAKQYIFKMLMVD-TYPLTIAKDWSQHSSNHQ 65
Query: 75 HKVAIDRLVQLRLF---SEEKKKETTYRLNSTFQSNLQKHLIN-GGALPREPMPSGITAR 130
HK A+ +L L++ +++ E + +LN FQ N++ L+ + T +
Sbjct: 66 HKEALKKLFDLKIILLNRGKQQSEQSIQLNPLFQENIKSALVEFDKVIFSNSSNIKDTNK 125
Query: 131 LPTLEDLEAYAIGQWECFLLQLISSAQAERPTNF------SSSMMKVFQRGLL------- 177
+P + DL+ Y+ QWE L L S A +P+ F SS++ + Q G L
Sbjct: 126 IPNINDLDNYSKKQWEQVLYFL--SDDAAQPSKFISDLLLSSNLTRRDQDGSLSITSDGF 183
Query: 178 -------------------------------------IQSILRSLKFLCQGILEAYNLNT 200
+ L L FL G + Y +
Sbjct: 184 KFLLKDVYTQIWTLLIVYLNDLEKKRREGLTQGSRNDLLGFLFRLSFLQLG--KGYLVGE 241
Query: 201 LSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT------------DSSA- 247
L+E+Q+ + GL+ ++ +F PT+L +L+ T +SS+
Sbjct: 242 LTELQKEYLICLKQFGLIYMKSD-ASLFFYPTRLIISLTTGKTLSLIQTLAVDKINSSSN 300
Query: 248 ------------RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 295
++ G++V+ETN+R+YAY+ S L +L LF K+ Y+LPNL VG IT+E
Sbjct: 301 SANTVASSTIEKKESGYIVLETNYRLYAYTASSLQISLLSLFVKMLYRLPNLAVGIITRE 360
Query: 296 SLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYY 355
S+ A +GITA+QII F++ NAHP + +P+ V +QI LWE + NR+ T + Y
Sbjct: 361 SIRTALIHGITADQIIDFIRHNAHPNAVNNGQPIPDVVAEQILLWEQERNRITYTKSVLY 420
Query: 356 EEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
FP+ D + A +A+++ +W + + LVVN + +R F++
Sbjct: 421 NSFPTTDCYHATLKFAKEQDYYIWSNDQLKTLVVNENGNDPIRNFIK 467
>gi|388857860|emb|CCF48525.1| probable TFB2-TFIIH subunit (transcription/repair factor) [Ustilago
hordei]
Length = 492
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 134/436 (30%), Positives = 215/436 (49%), Gaps = 57/436 (13%)
Query: 23 LNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRL 82
L +LYE P C AI R LP +A++ + ML++D + A W+ + A+D+L
Sbjct: 54 LIRLYEKPASCLAIFRLLPMMARQLIMHMLFLDVPLAADDFIAWIKKEARKDFDAAVDKL 113
Query: 83 VQLRLFS-EEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPT-LEDLEAY 140
+L + + + LN+ F +++ L GG +P + + L+ Y
Sbjct: 114 SRLSIVQLKSTGGKQILLLNAVFTDGMRRALTGGGKHRSFGVPCDTEDKNAVDVAFLDQY 173
Query: 141 AIGQWECFLLQLISSAQAERPTN------FSSSMMK-------------VFQRG------ 175
A +WE L ++ S + P S++M+ + RG
Sbjct: 174 ARNKWETILHYMVGSENSSTPREPVLYLLRRSNLMQPRPSSGSGSGGLNITSRGFQFLLE 233
Query: 176 --------LLIQ----------SILRSLKFLCQ-GILE---AYNLNTLSEIQRSMIKDFA 213
LL+Q ++ L FL G LE Y+ L E Q M++DF
Sbjct: 234 DVNTQLWDLLLQYLDMAEERNMDLVEVLAFLFMLGSLELGRDYSTEELPETQLHMLEDFR 293
Query: 214 DLGLVKLQQGRKESWFIPTKLATNLSMS-----LTDSSARKE--GFVVVETNFRMYAYST 266
D GLV Q+ F PT+LAT L+ S L+ + A +E G++++ETN+R+YAY++
Sbjct: 294 DYGLV-YQRKASSRRFYPTRLATTLTSSAAIPLLSSNGAEQEERGYIILETNYRLYAYTS 352
Query: 267 SKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI 326
+ L +L LF I+ + PNL+VG+IT++S+ +A NGITAEQII++L +AH ++
Sbjct: 353 NPLRVAVLSLFVTIKARFPNLVVGSITRDSVKSALANGITAEQIITYLTHHAHVQMHRND 412
Query: 327 PSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMR 386
P +P V DQIRLWE + NRV + +F S+ FE +YA+ L+WED K R
Sbjct: 413 PLLPVTVSDQIRLWEREKNRVVQNLGSLFTDFTSQFDFEEVRNYAKQLGVLVWEDESKRR 472
Query: 387 LVVNAEIHMHMREFLR 402
V+ + +R+++R
Sbjct: 473 FFVDEAGNEPVRDYIR 488
>gi|340371925|ref|XP_003384495.1| PREDICTED: general transcription factor IIH subunit 4-like
[Amphimedon queenslandica]
Length = 446
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 131/443 (29%), Positives = 218/443 (49%), Gaps = 53/443 (11%)
Query: 10 NFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLP 69
+ + + SL + L +LY++P C A+ RSL L + Y+ ++L+I+ +P + W LP
Sbjct: 6 DLLTYLQSLPSAVLTRLYQHPPSCLAVYRSLSELGQLYIMRVLFIERPLPLADINSWALP 65
Query: 70 DGFTKHKVAIDRLVQLRLFSE---EKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSG 126
G H + L +L +F ++ Y+LN ++Q+NL+ + GG L P G
Sbjct: 66 -GNNLHAETLSLLNKLHIFEPVLIRTGQQQGYQLNQSYQTNLRILICGGGQLWAVPGHRG 124
Query: 127 ITARLPTLEDLEAYAIGQWECFL-----------------LQ---LISSAQAERPTNFSS 166
+ L YA +WE L LQ L+S A + P+ ++
Sbjct: 125 DDKHSRDIPYLNDYADKKWENILNFMVGGSEKLDSEIVQVLQYAGLMSQASSRHPSFITT 184
Query: 167 ---------SMMKVFQ-----------RGLLIQSILRSLKFLCQ----GILEAYNLNTLS 202
+ +++Q RG+ ++ LKF+ Q + + Y+ L+
Sbjct: 185 LGFQFLLMDTQSQIWQFILQYLNTAQDRGM---DLIDCLKFIFQLSFSTLGKDYSTKGLT 241
Query: 203 EIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT-DSSARKEGFVVVETNFRM 261
E Q + + GLV ++ + ++ PTKL L+ T + + GF++VETN+R+
Sbjct: 242 ESQLTFMYHLCQFGLVYQRKSSSKRYY-PTKLVIQLTAGETIGMNTSQAGFIIVETNYRV 300
Query: 262 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR 321
AY+ SKLH L LF +++Y+ PN+ VG IT+ES+ A +GI A+QIISFL Q+AH
Sbjct: 301 IAYTDSKLHIATLALFCQMQYRFPNVAVGTITRESIQQALVHGIKADQIISFLTQHAHHN 360
Query: 322 VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWED 381
+ + +P V DQI+LWE + NR+ Y EF S +E YA D LLW +
Sbjct: 361 MLSKAHILPPTVTDQIKLWEIERNRLSFQEGILYSEFLSVTDYEKVKKYAEDLGVLLWSN 420
Query: 382 SKKMRLVVNAEIHMHMREFLRGQ 404
++ +V++ + H +R F + Q
Sbjct: 421 RQRRLMVIHPDRHDEIRHFWKRQ 443
>gi|4504201|ref|NP_001508.1| general transcription factor IIH subunit 4 [Homo sapiens]
gi|113865855|ref|NP_001038968.1| general transcription factor IIH subunit 4 [Pan troglodytes]
gi|114050799|ref|NP_001040607.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|297677636|ref|XP_002816695.1| PREDICTED: general transcription factor IIH subunit 4 isoform 2
[Pongo abelii]
gi|332245940|ref|XP_003272109.1| PREDICTED: general transcription factor IIH subunit 4 [Nomascus
leucogenys]
gi|426352309|ref|XP_004043656.1| PREDICTED: general transcription factor IIH subunit 4 [Gorilla
gorilla gorilla]
gi|17380328|sp|Q92759.1|TF2H4_HUMAN RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|38503276|sp|P60027.1|TF2H4_PANTR RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|1514597|emb|CAA68870.1| transcription factor TFIIH [Homo sapiens]
gi|13436278|gb|AAH04935.1| General transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|15277224|dbj|BAB63317.1| Transcription factor II H [Homo sapiens]
gi|16740884|gb|AAH16302.1| General transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|21655317|gb|AAM64222.1| general transcription factor IIH, polypeptide 4 (52kD subunit)
[Homo sapiens]
gi|27544403|dbj|BAC54936.1| transcription factor II H [Homo sapiens]
gi|30583481|gb|AAP35985.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|32127781|dbj|BAC78171.1| transcription factor II H [Pan troglodytes]
gi|55700798|dbj|BAD69753.1| general transcription factor IIH, polypeptide 4, 52kDa [Macaca
mulatta]
gi|60655839|gb|AAX32483.1| general transcription factor IIH polypeptide 4 [synthetic
construct]
gi|60655841|gb|AAX32484.1| general transcription factor IIH polypeptide 4 [synthetic
construct]
gi|86197966|dbj|BAE78622.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|90960934|dbj|BAE92819.1| general transcription factor IIH, polypeptide 4 [Pan troglodytes]
gi|90960936|dbj|BAE92820.1| general transcription factor IIH, polypeptide 4 [Pan troglodytes]
gi|114306784|dbj|BAF31271.1| TFIIH protein [Homo sapiens]
gi|119623752|gb|EAX03347.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|123992979|gb|ABM84091.1| general transcription factor IIH, polypeptide 4, 52kDa [synthetic
construct]
gi|123999907|gb|ABM87462.1| general transcription factor IIH, polypeptide 4, 52kDa [synthetic
construct]
gi|355561507|gb|EHH18139.1| General transcription factor IIH polypeptide 4, partial [Macaca
mulatta]
gi|355748409|gb|EHH52892.1| General transcription factor IIH polypeptide 4 [Macaca
fascicularis]
gi|380812138|gb|AFE77944.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|380812140|gb|AFE77945.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|383408563|gb|AFH27495.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|410214852|gb|JAA04645.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410250640|gb|JAA13287.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410290944|gb|JAA24072.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410352807|gb|JAA43007.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
Length = 462
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 130/450 (28%), Positives = 219/450 (48%), Gaps = 48/450 (10%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 11 RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 70
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 71 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 130
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA--------------------- 158
+ G + L+ YA +WE L ++ S A
Sbjct: 131 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEP 190
Query: 159 ----------------ERPTNFSSSMMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYN 197
+ P M++ Q RG+ + IL L L L + Y+
Sbjct: 191 GEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYS 250
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVV 255
+ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VV
Sbjct: 251 VEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVV 309
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 310 ETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLR 369
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
AHP + + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+
Sbjct: 370 TRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELG 429
Query: 376 GLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
L++E+S K +VV H ++ F + Q
Sbjct: 430 VLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459
>gi|359320969|ref|XP_003639474.1| PREDICTED: general transcription factor IIH subunit 4-like [Canis
lupus familiaris]
Length = 463
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/450 (29%), Positives = 220/450 (48%), Gaps = 48/450 (10%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 12 RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPFLAKNWVMRMLFLEQPLPQAA 71
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 72 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 131
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA--------------------- 158
+ G + L+ YA +WE L ++ S A
Sbjct: 132 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEP 191
Query: 159 ----------------ERPTNFSSSMMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYN 197
+ P M++ Q RG+ + IL L L L + Y+
Sbjct: 192 GEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYS 251
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVV 255
+ +S+ + ++ + GLV Q+ RK + PT+LA NLS +S +A + GF++V
Sbjct: 252 VEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIIV 310
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 311 ETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLR 370
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
AHP + + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+
Sbjct: 371 TRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELG 430
Query: 376 GLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
L++E+S K +VV H ++ F + Q
Sbjct: 431 VLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|443894209|dbj|GAC71558.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB2 [Pseudozyma antarctica
T-34]
Length = 491
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 130/434 (29%), Positives = 213/434 (49%), Gaps = 55/434 (12%)
Query: 23 LNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRL 82
L +LYE P C AI R LP LA++ + ML++ + A W+ D + VA+ +L
Sbjct: 55 LIRLYEKPASCLAIFRLLPMLARQLIMHMLFLHAPLAADDFLAWLRKDVRNEFDVAVAKL 114
Query: 83 VQLRLFS-EEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPT-LEDLEAY 140
+L + + + LN+ F +++ L GG+ +P + + L+ Y
Sbjct: 115 ARLSIVQLKPASAKQILLLNAVFTEGMRRALTGGGSHRSFGVPCDTEDKNAVDIAFLDDY 174
Query: 141 AIGQWECFLLQLISSAQAERP-----------------TNFSSSMMKVFQRG-------- 175
A +WE L ++ S ++ P + +++ + + RG
Sbjct: 175 ARTKWETILHYMVGSDKSSTPREPVLYLLRRSNLMQSRSAAATASLNITSRGFQFLLEDV 234
Query: 176 ------LLIQ----------SILRSLKFLCQ-GILE---AYNLNTLSEIQRSMIKDFADL 215
LL+Q ++ L FL G LE Y+ L E Q M++DF D
Sbjct: 235 NTQLWHLLLQYLDMAEERNMDLVEVLAFLFMLGSLELGRDYSTEELPETQLHMLEDFRDY 294
Query: 216 GLVKLQQGRKESWFIPTKLATNLS-------MSLTDSSARKEGFVVVETNFRMYAYSTSK 268
GLV Q+ F PT+LAT L+ +S S + G++++ETN+R+YAY+++
Sbjct: 295 GLV-YQRKASSRRFYPTRLATTLTSSAAAPLLSTNGSEPEERGYIILETNYRLYAYTSNP 353
Query: 269 LHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPS 328
L +L LF I+ + PNL+VG+IT++S+ +A NGITAEQII++L +AH ++ P
Sbjct: 354 LRVAVLSLFVTIKARFPNLLVGSITRDSVKSALANGITAEQIITYLTHHAHLQMHRNDPL 413
Query: 329 VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLV 388
+P V DQIRLWE + NRV+ + +F S+ F +YA L+W D K RL
Sbjct: 414 LPVTVSDQIRLWEREKNRVQQNLGSLFTDFTSQPDFAEVRNYASQLGVLVWHDEPKRRLF 473
Query: 389 VNAEIHMHMREFLR 402
V+ + +R+++R
Sbjct: 474 VDEAGNEPVRDYIR 487
>gi|332030486|gb|EGI70174.1| General transcription factor IIH subunit 4 [Acromyrmex echinatior]
Length = 550
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 128/437 (29%), Positives = 220/437 (50%), Gaps = 62/437 (14%)
Query: 10 NFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLP 69
N + + S + LNKLY P IC A+ LP +AK YV ++L+++ +P + W
Sbjct: 20 NLQEYLKSRSPDTLNKLYHKPPICLAVFCELPVIAKHYVMRLLFVEQPVPQAVIASWCSK 79
Query: 70 DGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGGALPREPMPSGI 127
F +H+ + L +L ++ E + LNSTF+ NL+ L+ GG P +
Sbjct: 80 LYFEEHQKVVQVLNELYVWKEASIPGGLPGWTLNSTFKKNLKIVLLGGGK------PWTM 133
Query: 128 TARLPT------LEDLEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK----- 170
+ +L T + L++YA+ +WEC L ++ S Q E + + +MK
Sbjct: 134 SNQLETDSKPRDVAFLDSYALERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDEAD 193
Query: 171 ----VFQRG---LLIQS---------------------ILRSLKFLCQ----GILEAYNL 198
+ Q G LL+ + ++ L FL Q + + Y+
Sbjct: 194 GSPIITQAGFQFLLLDTASQVWYFILQYLDTIEARGLDLVECLTFLFQLNFSTLGKDYST 253
Query: 199 NTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFVVV 255
+SE + ++ + GLV Q+ RK F PT+LA N++ T R KEG+++V
Sbjct: 254 EGMSEGLLTFLQHLREFGLV-YQRKRKAGRFYPTRLALNIATGETKPLTRDTDKEGYIIV 312
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S L +L LF ++ Y+ PN++V +T++S+ A ++GITA QI+ +L+
Sbjct: 313 ETNYRVYAYTNSNLQVALLGLFCEMLYRFPNVVVSILTRDSVRQALKSGITASQIVGYLR 372
Query: 316 QNAHPRVADRIPSV-PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDR 374
Q+AH ++ + P + P + DQI+LWE++ NR + Y +F S+ FE D+A
Sbjct: 373 QHAHSKMIEAGPPILPPTIVDQIKLWENERNRFLFSEGVLYSQFLSQTDFEVLRDHAVST 432
Query: 375 SGLLWEDSKKMRLVVNA 391
L+W+ ++ L+ +
Sbjct: 433 GVLIWQSERRSTLLADT 449
>gi|71024427|ref|XP_762443.1| hypothetical protein UM06296.1 [Ustilago maydis 521]
gi|46097692|gb|EAK82925.1| hypothetical protein UM06296.1 [Ustilago maydis 521]
Length = 491
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 130/435 (29%), Positives = 216/435 (49%), Gaps = 56/435 (12%)
Query: 23 LNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRL 82
L +LY+ P C AI R LP +A++ + ML++D + A W+ + + A+D+L
Sbjct: 54 LIRLYQKPASCLAIFRLLPMMARQLIMHMLFLDVPLAADDFLAWIKKEVKNEFDAAVDKL 113
Query: 83 VQLRLFS-EEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPT-LEDLEAY 140
+L + + + LN+ F +++ L GG +P + + L+ Y
Sbjct: 114 SRLSIIQLKASAGKQMLLLNAGFTEGMRRALTGGGKHRSFGVPCDTEDKNAVDVAFLDQY 173
Query: 141 AIGQWECFLLQLISSAQAERP------------------TNFSSSMMKVFQRG------- 175
A +WE L ++ S + P + S+ + + RG
Sbjct: 174 ARTKWETILHYMVGSDNSSTPREPVLYLLRRSNLMQPRTASSSNGGLNITSRGFQFLLED 233
Query: 176 -------LLIQ----------SILRSLKFLCQ-GILE---AYNLNTLSEIQRSMIKDFAD 214
LL+Q ++ L FL G LE Y+ L E Q M++DF D
Sbjct: 234 VNTQLWDLLLQYLDMAEERNMDLVEVLAFLFMLGSLELGRDYSTEELPETQLHMLEDFRD 293
Query: 215 LGLVKLQQGRKESWFIPTKLATNLSMS-----LTDSSARKE--GFVVVETNFRMYAYSTS 267
GLV Q+ F PT+LAT L+ S L+ + +E G++++ETN+R+YAY+++
Sbjct: 294 YGLV-YQRKASSRRFYPTRLATTLTSSAAVPLLSSNGTEQEERGYIILETNYRLYAYTSN 352
Query: 268 KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIP 327
L +L LF I+ + PNL+VG+IT++S+ +A NGITAEQII++L +AH ++ P
Sbjct: 353 PLRVAVLSLFVTIKARFPNLVVGSITRDSVKSALANGITAEQIITYLTHHAHLQMHRNDP 412
Query: 328 SVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRL 387
+P V DQIRLWE + NRV+ + +F S+ FE +YA+ L+W+D +K R
Sbjct: 413 LLPVTVSDQIRLWEREKNRVQQNLGSLFTDFTSQFDFEEVRNYAKQLGVLVWQDEEKRRF 472
Query: 388 VVNAEIHMHMREFLR 402
V+ + +R+++R
Sbjct: 473 FVDEAGNEPVRDYIR 487
>gi|62896773|dbj|BAD96327.1| general transcription factor IIH, polypeptide 4, 52kDa variant
[Homo sapiens]
Length = 462
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 130/450 (28%), Positives = 218/450 (48%), Gaps = 48/450 (10%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 11 RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 70
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 71 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 130
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA--------------------- 158
+ G + L+ YA +WE L ++ S A
Sbjct: 131 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEP 190
Query: 159 ----------------ERPTNFSSSMMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYN 197
+ P M++ Q RG+ + IL L L L + Y+
Sbjct: 191 GEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYS 250
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVV 255
+ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VV
Sbjct: 251 VEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVV 309
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 310 ETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLR 369
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
AHP + + P +P + DQIRLWE +R+ T Y +F S+ FE +AR+
Sbjct: 370 TRAHPVMLKQTPVLPPTITDQIRLWELGRDRLRFTEGVLYNQFLSQVDFELLLAHARELG 429
Query: 376 GLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
L++E+S K +VV H ++ F + Q
Sbjct: 430 VLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459
>gi|47059175|ref|NP_997666.1| general transcription factor II H, polypeptide 4 [Rattus
norvegicus]
gi|46237651|emb|CAE84027.1| general transcription factor II H, polypeptide 4 [Rattus
norvegicus]
gi|117558335|gb|AAI27470.1| General transcription factor II H, polypeptide 4 [Rattus
norvegicus]
Length = 463
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 129/444 (29%), Positives = 216/444 (48%), Gaps = 48/444 (10%)
Query: 9 KNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVL 68
+N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P + WV
Sbjct: 18 RNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVALWVK 77
Query: 69 PDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALPREPMPS 125
+ + + L LR++ + LN F+ NL+ L+ GG A +
Sbjct: 78 KEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRIALLGGGKAWSDDTSQL 137
Query: 126 GITARLPTLEDLEAYAIGQWECFLLQLISSAQA--------------------------- 158
G + L+ YA +WE L ++ S A
Sbjct: 138 GPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEPGEPPCI 197
Query: 159 ----------ERPTNFSSSMMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYNLNTLSE 203
+ P M++ Q RG+ + IL L L L + Y++ +S+
Sbjct: 198 TSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSD 257
Query: 204 IQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRM 261
+ ++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VVETN+R+
Sbjct: 258 SLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRL 316
Query: 262 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR 321
YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP
Sbjct: 317 YAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPV 376
Query: 322 VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWED 381
+ + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+
Sbjct: 377 MLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFEN 436
Query: 382 SKKMRLVVNAEIHMHMREFLRGQN 405
S K +VV H ++ F + Q
Sbjct: 437 SAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|74143475|dbj|BAE28812.1| unnamed protein product [Mus musculus]
Length = 463
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 130/446 (29%), Positives = 216/446 (48%), Gaps = 52/446 (11%)
Query: 9 KNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVL 68
+N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P + WV
Sbjct: 18 RNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVALWVK 77
Query: 69 PDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALPREPMPS 125
+ + + L LR++ + LN F+ NL+ L+ GG A +
Sbjct: 78 KEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRIALLGGGKAWSDDTSQL 137
Query: 126 GITARLPTLEDLEAYAIGQWECFLLQLISSAQA--------------------------- 158
G + L+ YA +WE L ++ S A
Sbjct: 138 GPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEPGEPPCI 197
Query: 159 ----------ERPTNFSSSMMKVFQ----RGL---LIQSILRSLKFLCQGILEAYNLNTL 201
+ P M++ Q RG+ I S L L F G + Y++ +
Sbjct: 198 TSAGFQFLLLDMPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLG--KDYSVEGM 255
Query: 202 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNF 259
S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VVETN+
Sbjct: 256 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNY 314
Query: 260 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAH 319
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ +GITA+QII FL+ AH
Sbjct: 315 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQVIASGITAQQIIHFLRTRAH 374
Query: 320 PRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLW 379
P + + P +P + DQIRLWE + +R+ T Y +F S+ VFE +AR+ L++
Sbjct: 375 PVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVVFELLLAHARELGVLVF 434
Query: 380 EDSKKMRLVVNAEIHMHMREFLRGQN 405
E+S K +VV H ++ F + Q
Sbjct: 435 ENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|389749775|gb|EIM90946.1| transcription factor Tfb2 [Stereum hirsutum FP-91666 SS1]
Length = 494
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 129/447 (28%), Positives = 213/447 (47%), Gaps = 72/447 (16%)
Query: 23 LNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRL 82
L +LY P C +I R L P+ ++ V +L+++ AIP TM WV+ + A+ +L
Sbjct: 32 LTRLYNRPSSCLSIFRLLAPVERQLVMNLLWLESAIPTNTMSSWVVKENKKFFDEALAQL 91
Query: 83 VQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARL--PTLEDLEAY 140
+L + K LN TF+++L+ + GG +P+ + P++E L+ Y
Sbjct: 92 TRLHILPNPSAK---LGLNPTFKTSLRHAITGGGTSGSFGVPAEADDKRGPPSVEILDTY 148
Query: 141 AIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGI-------- 192
A+ +WE L ++SS + PT S ++ + QR L+ +L+ G
Sbjct: 149 ALERWETILHFMVSSGTGQMPTKPSQGVLYLLQRSKLMAPTQGTLQITSSGFQFLLHTPH 208
Query: 193 -----------------------------------------LEAYNLNTLSEIQRSMIKD 211
Y+ +LS+ Q++M++D
Sbjct: 209 AQLWELLLQYLAMVEERQMDLVEVLSFLFMLSTMELGRVRQFHDYSAESLSDTQKAMLED 268
Query: 212 FADLGLVKLQQGRKESWFIPTKLATNLSMSL----------TDSSARKEGFVVVETNFRM 261
D GL+ Q+ F PT+LAT L+ SL T + + +GF+++ETN+R+
Sbjct: 269 LRDYGLI-WQRKATSRRFSPTRLATTLTSSLPPLPTASGTGTSGTGQTQGFIILETNYRL 327
Query: 262 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR 321
YAY+ + L +L LF ++ + PNL+VG+IT++S+ A NGITA+QIIS+L AHP+
Sbjct: 328 YAYTDNPLQTAVLNLFVTMKSRFPNLVVGSITRDSVRKALSNGITADQIISYLTTYAHPQ 387
Query: 322 VADRI-------PSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDR 374
+ + P +P V DQIRLWE + NR++ Y F S+ +E YA+
Sbjct: 388 MRKNVSRCRSFTPLLPVTVQDQIRLWELERNRLKSQEGFLYTAFASQADYEYVLTYAKQL 447
Query: 375 SGLLWEDSKKMRLVVNAEIHMHMREFL 401
+LWE+ K E H ++R F+
Sbjct: 448 DVVLWENPTKRCFFGTMEGHANIRGFI 474
>gi|440800489|gb|ELR21525.1| transcription factor tfb2 subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 465
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 117/449 (26%), Positives = 218/449 (48%), Gaps = 83/449 (18%)
Query: 23 LNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIP-AKTMEEWVLP----DGFTKHKV 77
L+ LY +P+ C+A+ RSLP LAK++V ++ + +I ++ ++ W P G +
Sbjct: 16 LDNLYADPWTCQAVFRSLPALAKQWVLRLAFASPSITRSRLLQHWTSPRFQSQGEAALRR 75
Query: 78 AIDRLVQLRLFSEEKKKE------------------TTYRLNSTFQSNLQKHLINGGALP 119
+ + +++ Y N F SN QK
Sbjct: 76 LLALRILRERLPADRRDHGGGDEADVMEVMEPLGGGVAYEFNKHFGSNFQK--------- 126
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMM---------- 169
+ +PT E+L A+ W+ L ++ S + P++ S++
Sbjct: 127 MDGEGEEEEEAMPTREELAAFTTSCWDTIFLFIMGSTVIQPPSDRVVSLLTRGEFMVVHE 186
Query: 170 -----KVFQRGLL------------------------------IQSILRSLKFLCQGILE 194
++ +G + S L L FL G E
Sbjct: 187 EDQSIRIADKGFPFLLKDLRTQVWTLLLLYLRSLQEEKANVHDVLSFLFRLSFLTVG--E 244
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR-KEGFV 253
Y ++ L+ + +++D DLG++ ++ + W PT+LA LS T+++ R +EG++
Sbjct: 245 GYQMDDLAFSESGLLQDLQDLGII-YRKHKDSKWLYPTQLAIGLSS--TEAAKRDQEGWI 301
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
+V T++R+YAY++S + +L LF++IEYQLPN+++G + +E++ A + GI+A QI+ F
Sbjct: 302 IVGTDYRIYAYTSSPVKLLLLSLFTQIEYQLPNMVMGILLRENIRQAVQVGISANQILQF 361
Query: 314 LQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARD 373
L+ NAHP++ P +PE++ DQ+RLWE++ R+ ++ ++Y++F S F+ A YARD
Sbjct: 362 LETNAHPQMKQNTPIIPESIADQLRLWEAEDRRLSLSSGYFYDDFASLAAFKKAEKYARD 421
Query: 374 RSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
L++ D+ K L V+ H +R +++
Sbjct: 422 VGALIYSDATKRFLFVSEPGHQLLRRYVK 450
>gi|66800623|ref|XP_629237.1| general transcription factor IIH, polypeptide 4 [Dictyostelium
discoideum AX4]
gi|74850716|sp|Q54C29.1|TF2H4_DICDI RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=TFIIH basal transcription factor complex subunit 4
gi|60462610|gb|EAL60813.1| general transcription factor IIH, polypeptide 4 [Dictyostelium
discoideum AX4]
Length = 483
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 140/485 (28%), Positives = 232/485 (47%), Gaps = 112/485 (23%)
Query: 15 VASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTK 74
+ASL ++DL +LY++P+ C+AILRSLPP +K+Y+ +ML +D P ++W +
Sbjct: 10 LASLDSKDLEELYKDPWTCQAILRSLPPRSKQYILKMLLVD-TYPLSLAKDWSTQASIQQ 68
Query: 75 HKVAIDRLVQLRLFSEEK-----------------------------KKETTYRLNSTFQ 105
HK ++ +L L++ +K + E T RLN FQ
Sbjct: 69 HKESLKKLFDLKIIFLDKINKPIQPQQQQSSQQSSSQQQQQQQQQQQQTEQTIRLNPLFQ 128
Query: 106 SNLQKHLI--------NGGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQ 157
N+++ L+ N ++ P P+++DL++Y+ QWE L L S
Sbjct: 129 DNIKRSLVQVNQVIFSNNSSIKDNHKP-------PSIDDLDSYSKSQWEKVLYFL--SDD 179
Query: 158 AERPTNF------SSSMMKVFQRGLLIQSILRSLKFLCQGIL------------------ 193
+P+ SS++ K GL I S KFL + +
Sbjct: 180 TVQPSKLISELLLSSNLTKQEGDGLSITS--EGFKFLLKDVYTQIWTLLIVYLDDLEKKK 237
Query: 194 -----------------------EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKES--W 228
Y ++ LSE Q+ + GL+ + R +S
Sbjct: 238 GKGSGSRNDLLSFLFRLSFLNLGRGYLVSELSEQQKEYLFALKQFGLIYM---RTDSSIL 294
Query: 229 FIPTKLATNLS----MSLTDS-------SARKEGFVVVETNFRMYAYSTSKLHCEILRLF 277
F PT+L +L+ +SL S + +++G++V+ETN+R+YAY++S L +L LF
Sbjct: 295 FYPTRLIISLTTGKTLSLIQSISSERTQTQKEQGYIVLETNYRLYAYTSSSLQISLLSLF 354
Query: 278 SKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQI 337
K+ Y+LPNL VG IT+ES+ A +GITA+QII F++ N+HP A+ +P+ V +QI
Sbjct: 355 VKMLYRLPNLAVGIITRESIRTALIHGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQI 414
Query: 338 RLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHM 397
LWE++ NR+ T + Y FP+ D + A +A+++ +W LVV E + +
Sbjct: 415 LLWEAERNRITYTKSVLYNSFPTNDCYIATLKFAKEQDYYIWSHDPLKTLVVKEEGNDPI 474
Query: 398 REFLR 402
R F++
Sbjct: 475 RNFIK 479
>gi|449540295|gb|EMD31288.1| hypothetical protein CERSUDRAFT_119839 [Ceriporiopsis subvermispora
B]
Length = 412
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 204/406 (50%), Gaps = 59/406 (14%)
Query: 51 MLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQK 110
+L+++ AIP TM WV +G T + ++ L +L + K LN TF+S+L++
Sbjct: 3 LLWLESAIPVSTMAAWVTREGRTTYHASLSTLARLHILPTSATK---LALNPTFKSSLRQ 59
Query: 111 HLINGGALPRE--PMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSM 168
+ GG+ P P P++E L++YA+ +WE L ++SS + PT S ++
Sbjct: 60 AITGGGSSGSFGVPAPYDEINPGPSIETLDSYALERWETILYYMVSSGNGQYPTKPSDAV 119
Query: 169 MKVFQRGLLIQSIL--------RSLKFLCQ----------------------------GI 192
+ + +R L+ S+ +FL G
Sbjct: 120 LYLLKRSGLMTSVRGAALQITSSGFQFLLHPPHEQLWELLLQYLHLTEERQMDLVDVLGF 179
Query: 193 L---------EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS-- 241
L Y+ + LS Q++M++D D GL+ Q+ F PT+LAT L+ S
Sbjct: 180 LLMLSTMELGREYSTDGLSPTQKAMLEDLRDYGLL-WQRSATSQRFSPTRLATTLTASSN 238
Query: 242 ------LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 295
+ ++ +GF+V+ETN+R+YAY+ + L +L LF ++ + PNL++GA+T+E
Sbjct: 239 PLPTSSSASADSQSQGFIVLETNYRVYAYTDNPLQIAVLNLFVTMKSRFPNLVIGAVTRE 298
Query: 296 SLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYY 355
S+ A NGITA+QIIS+L +AHP++ P +P V DQIRLWE + NRV+ + Y
Sbjct: 299 SVKKALANGITADQIISYLTAHAHPQMRRYKPLLPVTVQDQIRLWELEKNRVKSQEGYLY 358
Query: 356 EEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 401
F S+ +E +YA+ ++WE + + E H ++R F+
Sbjct: 359 TAFASQADYEYVLNYAKQLDVVIWESPTRRCFFGSLEGHSNIRGFI 404
>gi|6754094|ref|NP_034494.1| general transcription factor IIH subunit 4 [Mus musculus]
gi|18202124|sp|O70422.1|TF2H4_MOUSE RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|2997755|gb|AAC08594.1| TFIIH transcription/DNA repair factor p52 subunit [Mus musculus]
gi|15215027|gb|AAH12638.1| Gtf2h4 protein [Mus musculus]
gi|26348003|dbj|BAC37650.1| unnamed protein product [Mus musculus]
gi|74194835|dbj|BAE26009.1| unnamed protein product [Mus musculus]
gi|74222199|dbj|BAE26910.1| unnamed protein product [Mus musculus]
Length = 463
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 129/444 (29%), Positives = 216/444 (48%), Gaps = 48/444 (10%)
Query: 9 KNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVL 68
+N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P + WV
Sbjct: 18 RNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVALWVK 77
Query: 69 PDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALPREPMPS 125
+ + + L LR++ + LN F+ NL+ L+ GG A +
Sbjct: 78 KEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRIALLGGGKAWSDDTSQL 137
Query: 126 GITARLPTLEDLEAYAIGQWECFLLQLISSAQA--------------------------- 158
G + L+ YA +WE L ++ S A
Sbjct: 138 GPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEPGEPPCI 197
Query: 159 ----------ERPTNFSSSMMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYNLNTLSE 203
+ P M++ Q RG+ + IL L L L + Y++ +S+
Sbjct: 198 TSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSD 257
Query: 204 IQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRM 261
+ ++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VVETN+R+
Sbjct: 258 SLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRL 316
Query: 262 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR 321
YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP
Sbjct: 317 YAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPV 376
Query: 322 VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWED 381
+ + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+
Sbjct: 377 MLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFEN 436
Query: 382 SKKMRLVVNAEIHMHMREFLRGQN 405
S K +VV H ++ F + Q
Sbjct: 437 SAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|357618296|gb|EHJ71332.1| putative TFIIH basal transcription factor complex p52 subunit
[Danaus plexippus]
Length = 603
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 131/468 (27%), Positives = 226/468 (48%), Gaps = 71/468 (15%)
Query: 2 PQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAK 61
P + K+ + + S + + L LY P IC A+ R LP LA+ +V ++L+++ +P
Sbjct: 142 PSPTLQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQA 201
Query: 62 TMEEWVLPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGG--- 116
+ WV + A + L +L ++ E + L+ +F+ NL+ L+ GG
Sbjct: 202 VVASWVTQTHAKEQHKACEALSELSVWQEAPIPGGLPGWMLSQSFKKNLKVALLGGGRPW 261
Query: 117 ALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVF-QRG 175
++ P G + + L+AYA+ +WEC L ++ S Q E S+ +++ Q G
Sbjct: 262 SMSSSLEPDG---KARDVSFLDAYALERWECVLHYMVGSTQTE---GISADAVRILLQAG 315
Query: 176 L-------------------LIQSILRSLKFLCQGILEAYNLNTLSEIQ----------R 206
L L+ S + + Q L +LS +
Sbjct: 316 LMNRDAEDGTAVITRAGFQFLLLSTAKQVWLFLQHYLHTAEKRSLSAAECLAFLYQLSFS 375
Query: 207 SMIKDFA----------------DLGLVKLQQGRKESWFIPTKLATNLSMSLTDS----- 245
++ KD++ + GLV Q+ RK F PT+LA N++ + D
Sbjct: 376 TLGKDYSTEGMSNNMLVFLQHLREFGLV-YQRKRKAGRFYPTRLALNIT-CVKDGVAPLQ 433
Query: 246 SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGI 305
+A G+++ ETN+R+YAY+TS L +L LF+++ Y+ PN++VG +T+ES+ A GI
Sbjct: 434 TAASSGYIIAETNYRVYAYTTSALQVALLGLFTELVYRFPNVVVGVLTRESVRAALRGGI 493
Query: 306 TAEQIISFLQQNAHPRV--ADR-----IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF 358
+A+QII++L+Q++HP++ +D+ S+P V DQIRLWES+ NR T Y +F
Sbjct: 494 SAQQIITYLEQHSHPQMLKSDQGGIRSSSSLPPTVLDQIRLWESERNRFTYTEGVVYNQF 553
Query: 359 PSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
S+ F DY R L+W + +VV H ++ + + +K
Sbjct: 554 LSQAEFNVLRDYGRSSGALVWAADRTRTMVVARAAHDDVKRYWKRYSK 601
>gi|342319113|gb|EGU11064.1| RNA polymerase II transcription factor B subunit 2 [Rhodotorula
glutinis ATCC 204091]
Length = 496
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 135/463 (29%), Positives = 222/463 (47%), Gaps = 72/463 (15%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
A + ++ L+A +LY +P C +I R LP ++ V ML+ + + + + WV
Sbjct: 19 ASHLYGLLDRLSAAMFTRLYASPASCLSIFRLLPVTSRHIVLNMLWYEEVVRVRDVALWV 78
Query: 68 L-------PDGFTKH-KVAIDRLVQLRLF-------SEEKKKETTYRLNSTFQSNLQKHL 112
G +H ++ L +L + S+ K ET +N F+ + + L
Sbjct: 79 RERKSEGGDKGERRHLSSSLSALARLHIITPRSSRPSDTSKDETELEMNPGFRDSFRMAL 138
Query: 113 INGGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISS-AQAERPTNFSSSMMKV 171
GG P+ T++ L+ +A QWE ++ S A A++P ++ +
Sbjct: 139 TGGGKQGSFGAPAAEQDEEVTVQFLDDHAEVQWETIQHFMVGSDAGAKKP---GEKVLSL 195
Query: 172 FQRGLLIQSILRSLK----------FLCQ------------------------------G 191
+R L+ S RSL+ FL + G
Sbjct: 196 LERSGLMYSPTRSLRNMRITSKGFQFLLEDVNTQLWDLLLVYLEGSQDLVETIGFLFMLG 255
Query: 192 ILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL-----T 243
LE AY + LS+IQ +++D AD GLV L + R F PT+LAT L+ S +
Sbjct: 256 SLELGRAYMTDNLSQIQHGVLRDLADYGLVYLPE-RNAPIFYPTRLATTLTSSAPPLVSS 314
Query: 244 DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFEN 303
S ++GF+V+ETN+++YAY+++ L +L LF+ ++ + N + G IT+ES+ N
Sbjct: 315 RHSNEEKGFIVLETNYKLYAYTSNPLQIAVLGLFAHLKTRFANFVTGHITRESIRRGLAN 374
Query: 304 GITAEQIISFLQQNAHPRVADRIPS----VPENVCDQIRLWESDLNRVEMTPAHYYEEFP 359
GITA QIIS+L AHP++ + S +P V DQIRLWE + R++ T + Y+EF
Sbjct: 375 GITANQIISYLASRAHPQMRAQAGSDDKLLPITVVDQIRLWEHERRRIQTTEGYLYDEFS 434
Query: 360 SRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
S +E +YAR+ +L E K ++ V A+ H +REF++
Sbjct: 435 STHDYELVVNYAREIGSVLLELPKARKVFVTADGHQQVREFIK 477
>gi|121714341|ref|XP_001274781.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus clavatus NRRL 1]
gi|119402935|gb|EAW13355.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus clavatus NRRL 1]
Length = 478
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 140/475 (29%), Positives = 226/475 (47%), Gaps = 90/475 (18%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDG 71
D + SL KLY+ P AI R LP LAK +V +LY+ +PA +E WV PD
Sbjct: 10 DYLESLPGTVFIKLYQEPSTALAIFRRMLPDLAKCFVMALLYLKDPLPAADLETWVKPDS 69
Query: 72 FTKHKVAIDRLVQLRLFSEEKKKETT--YRLNSTFQSNLQKHLINGGALPREPMPSGITA 129
+ A+ L +L + + + Y + F S+L++ L + S ++
Sbjct: 70 LKERDNALSTLGRLHILTNTMTADNVRAYMVTKEFASSLRQALTGAEHTQSFGVVSNVSD 129
Query: 130 RLP-TLEDLEAYAIGQWECFLLQLISSAQ--AERPTNFSSSMMKVFQRGLLIQSILRSLK 186
++ DL+ Y+ QWE L ++ + +R N S + ++ Q G L++ R ++
Sbjct: 130 EAAVSIADLDEYSRRQWEGVLGYMVGTGGLGMQRDVNLSKGVKQLLQAGHLVEIRDRRVE 189
Query: 187 -------FLCQGI--------------LEAYNLNTLS-----------EIQRS------- 207
F+ Q + EA ++++ E+ RS
Sbjct: 190 ITKDGFAFVLQDVGTQVWHILILYVESAEAIGMDSVEVLKFVFFLSSLELGRSYEKKQMT 249
Query: 208 -----MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--------------- 247
+ D AD G+V Q+ + + F PT+LAT L+ +DSSA
Sbjct: 250 SNQLRTLTDLADFGIV-YQESPEATHFYPTRLATTLT---SDSSALSNPIAGSLSGPTGT 305
Query: 248 ----RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFEN 303
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+ A E
Sbjct: 306 ASNKAGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSIRRAVEM 365
Query: 304 GITAEQIISFLQQNAHPRV----ADRIPS---------VPENVCDQIRLWESDLNRVEMT 350
GITA+QIIS+L +AHP++ A R S +P V DQIRLW+ + +RV+ T
Sbjct: 366 GITADQIISYLSTHAHPQMRKHNASRSTSNQAGMPVSVLPPTVVDQIRLWQLERDRVKAT 425
Query: 351 PAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQ 404
P +++F S +EA C YA + L+W+ D K+M V H + FLR +
Sbjct: 426 PGFLFKDFVSLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR---HEQVAAFLRSR 477
>gi|281208616|gb|EFA82792.1| general transcription factor IIH [Polysphondylium pallidum PN500]
Length = 458
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 228/456 (50%), Gaps = 84/456 (18%)
Query: 8 AKNFMDM---VASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTME 64
A++ +D+ ++SL+ DL +LY + F C+AILRSLPP K+Y+ +ML I+ +I +
Sbjct: 22 ARSTLDIFQYLSSLSRNDLEELYSDTFTCQAILRSLPPRCKQYILKMLLIE-SIQVNNVS 80
Query: 65 EWVLPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMP 124
W H +++RL L++ +++ FQSN+++ + N + +
Sbjct: 81 SWTAQSNKQTHLESLERLEDLKILIKQE-----------FQSNIKESITN----MKNVVV 125
Query: 125 SGITARLPTL----EDLEAYAIGQWECFLLQLISSAQAERP-------------TNFSSS 167
S + P L + L++Y+ QWE L L S +E P T +
Sbjct: 126 SAVERVEPNLQMSVDQLDSYSKSQWEKVLYFL--SDDSETPPELIADLLALSNLTKLNDG 183
Query: 168 MMKVFQRGL--LIQSI----------------------------LRSLKFLCQGILEAYN 197
M + G L++ I L L FL G AY
Sbjct: 184 SMVITSEGFKFLLKDIYTQIWTLIIVYLNSLETRGKSRRDALAFLFKLSFLSLG--SAYY 241
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT-----------DSS 246
+N L+E ++S++ D GLV ++ + E F PT+L +L+ T ++
Sbjct: 242 VNDLTEDEKSLLFDLRQFGLVYIRSEKSE-IFYPTRLIISLTTGKTVTVIKDLAKEMSNT 300
Query: 247 ARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGIT 306
+++G++++ETNFR+YAY+ S L +L LF K+ Y+LPNL VG +T+ES+ AF +GIT
Sbjct: 301 QKEQGYIILETNFRIYAYTASSLQISLLSLFVKMLYRLPNLSVGILTRESIRTAFLHGIT 360
Query: 307 AEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEA 366
A+QI+ F++QN HP + PE V +QIR+WE++ NR+ A ++ FP+++ F
Sbjct: 361 ADQIVDFIKQNGHPNMLK--VGAPEIVFEQIRIWENERNRILYKKAVLFDSFPTQESFNM 418
Query: 367 ACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
YA+D S +W K LVV+ ++ ++R
Sbjct: 419 TLQYAKDLSFYMWASEAKKVLVVSDNGFDAIKNYIR 454
>gi|443688956|gb|ELT91478.1| hypothetical protein CAPTEDRAFT_18660 [Capitella teleta]
Length = 463
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 131/444 (29%), Positives = 209/444 (47%), Gaps = 50/444 (11%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
K + + + L KLY +P C AI R LP L+K YV ++L+++ + + WV
Sbjct: 16 CKTLHEYLKGMPQNTLTKLYNHPATCLAIFRELPSLSKHYVLRILFVEQPVSHSVVSSWV 75
Query: 68 LPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGGALPREPMPS 125
T+H A+ L L ++ + Y L+ F++NL+ L+ GG+
Sbjct: 76 NSSNQTEHTAAVKSLSDLCVWQDHCLPGGLPGYLLSDVFRTNLKVALLGGGSPWAGSGAL 135
Query: 126 GITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTN-------FSSSMMKV------- 171
G + LE Y++ +WEC L + S + + S +MK
Sbjct: 136 GDDKHSKDVAFLEQYSMERWECVLHYMAGSKEGVSGVSRDVVHILLHSGLMKTEQSSPDP 195
Query: 172 ------FQRGLLIQS--------------------ILRSLKFLCQ----GILEAYNLNTL 201
FQ LL S ++ L FL Q + + Y+ ++
Sbjct: 196 CITPAGFQFLLLDTSTQVWFFMIEYLNTVESRKMDLVECLSFLFQLSFSTLGKDYSTESM 255
Query: 202 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL---SMSLTDSSARKEGFVVVETN 258
+ Q+ ++ + GLV Q+ R F PT+LA NL S +A ++GF+VVETN
Sbjct: 256 TSNQQRFLQHLREFGLV-YQRKRSSQRFYPTRLAVNLATGSKGGDSETASEDGFIVVETN 314
Query: 259 FRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNA 318
+R+YAY+ S L ++ LF + Y+ PN+ VG ++++S+ A GITAEQII+FL+ +A
Sbjct: 315 YRVYAYTNSSLKVALISLFCSMMYRFPNMAVGVVSRDSVREALSRGITAEQIINFLRNHA 374
Query: 319 HPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLL 378
HP R P +P V DQIRLWE + +R Y +F S+ FE DYA+D L
Sbjct: 375 HPHTQKRKPILPPTVSDQIRLWELERDRFHFNEGVLYNQFLSQTDFEVLRDYAKDLGVLS 434
Query: 379 WEDSKKMRLVVNAEIHMHMREFLR 402
+E+ + +VV H ++ F +
Sbjct: 435 YENIPRRLMVVTRAGHDDVKRFWK 458
>gi|195126587|ref|XP_002007752.1| GI12214 [Drosophila mojavensis]
gi|193919361|gb|EDW18228.1| GI12214 [Drosophila mojavensis]
Length = 492
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 136/474 (28%), Positives = 235/474 (49%), Gaps = 89/474 (18%)
Query: 9 KNFMDMVASL-TARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
KNF + + + T L KLY P IC A+ R LP +A+++V ++L++D +P + W
Sbjct: 29 KNFQEYLRTRQTPESLEKLYSYPPICLAVFRELPEIARQFVIRILFVDQPVPQAVVSSW- 87
Query: 68 LPDGFTKHKVAIDRLVQLRLFSEEKKKETT--------YRLNSTFQSNLQKHLINGG--- 116
+VA ++L S T + L+ TF+ ++++ L+ GG
Sbjct: 88 -----GAQRVAKEQLEATNCLSALSVWRVTAIPGGLAAWELSPTFKKSVRQVLLGGGKPW 142
Query: 117 ----ALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSA-------QAERPTN-- 163
+L R+ P + L+AYA+ +W C L ++ + +A P
Sbjct: 143 AITNSLERDSKPRDVAF-------LDAYAMSRWRCVLHYMVGTGNRSNTETEAISPDAVR 195
Query: 164 --FSSSMMKVFQRG-----------LLIQSILRSLKFL------CQ--GILEAYNLNTLS 202
+++MK +R LL+ + + F+ CQ G++ A L+ L
Sbjct: 196 ILLHANLMKRDEREGITITRQGFQFLLLDTRAQVWHFMLQYLDTCQERGLVLAECLSMLF 255
Query: 203 EIQRSMI-KDFADLGLVK---------------LQQGRKESWFIPTKLATNL-------- 238
++ S + +D++ G+ K Q+ RKE F PT+LA N+
Sbjct: 256 QLSFSTLGRDYSSEGMNKQMLMFLQHLREFGLVFQRKRKEHRFYPTRLALNVTNKEAAEA 315
Query: 239 SMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 298
S+S+ + ++ G++VVETN+R+YAY+ S+L +L LF+++ Y+ PNL+VG +T++S+
Sbjct: 316 SISVDEERMQERGYIVVETNYRVYAYTDSQLQVAVLGLFTELLYRFPNLVVGVLTRDSVR 375
Query: 299 NAFENGITAEQIISFLQQNAHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPA 352
A GITAEQI+S+L+Q AHP V I S +P V DQI+LWE + NR T
Sbjct: 376 QALRGGITAEQIVSYLEQYAHPNMKLVESAIQSKSCLPPTVVDQIKLWEMERNRFTYTEG 435
Query: 353 HYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
Y +F S++ F DYA+ ++ L+W++ + +VV H ++ + + +K
Sbjct: 436 VVYNQFLSQNDFVTLRDYAQSQNVLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 489
>gi|427785675|gb|JAA58289.1| Putative rna polymer [Rhipicephalus pulchellus]
Length = 457
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 126/451 (27%), Positives = 220/451 (48%), Gaps = 65/451 (14%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
++ + +L+ L+KLY +P C A+ R LP +++ Y+ ++L+++ +P + W
Sbjct: 10 CRDLHAYLKTLSPATLDKLYTHPATCLAVFRELPKISRHYIMRLLFVEQPVPQAVVSSWN 69
Query: 68 LPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGGALPREPMPS 125
H A++ L L ++++ + L++ F+ N+Q L+ GG P
Sbjct: 70 EQKYVKDHLEALEALTALHIWTDASLPGGLPGWSLSAVFRKNIQIALLGGGK------PW 123
Query: 126 GITARLPTLED------LEAYAIGQWECFLLQLIS-------SAQAERPTNFSSSM---- 168
+ + L + L+ YA +WEC L ++ SA A R + M
Sbjct: 124 AVYSALEKDKHGRDAAFLDQYAAERWECVLHFMVGCHTTEGISADAVRILLHAGLMKSDE 183
Query: 169 ---------MKVFQ-----------------------RGL-LIQ--SILRSLKFLCQGIL 193
M+ FQ RGL L++ + L L FL G
Sbjct: 184 GEGSSPLITMEGFQFLLMDTASQVWHFVLQYLDTLESRGLNLVECLTFLFQLSFLTLG-- 241
Query: 194 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR--KEG 251
+ Y+ +SE ++ + GLV Q+ R+ F PT+LA NL+ L +++ R + G
Sbjct: 242 KDYSTEGMSESLLVFLQHLREFGLV-YQRKRRSGRFYPTRLAINLASGLKETTLRSFEAG 300
Query: 252 FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQII 311
+++VETN+R+YAY+ S+L +L LF ++ Y+ PNL+V +T+ES+ A +GIT+ QII
Sbjct: 301 YIMVETNYRVYAYTNSQLQVALLALFCELLYRFPNLVVARLTRESVRQALRSGITSNQII 360
Query: 312 SFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 371
FL+ AHP + P +P + DQ+RLWE + +R Y +F S+ F+ +YA
Sbjct: 361 KFLRMYAHPEALKQTPVIPATIMDQLRLWEMERDRFVFREGVLYSQFISQSDFQLLRNYA 420
Query: 372 RDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+ L+W++ K +VVN H +++F +
Sbjct: 421 SELGVLIWDNPSKRVMVVNRNGHDEVKKFWK 451
>gi|169784197|ref|XP_001826560.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus oryzae RIB40]
gi|238508739|ref|XP_002385554.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus flavus NRRL3357]
gi|83775305|dbj|BAE65427.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220688446|gb|EED44799.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus flavus NRRL3357]
gi|391868531|gb|EIT77745.1| RNA polymerase II transcription initiation protein [Aspergillus
oryzae 3.042]
Length = 480
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 139/476 (29%), Positives = 219/476 (46%), Gaps = 92/476 (19%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDG 71
D + SL KLY+ P AI R LP LAK +V +LY+ +PA +E WV +
Sbjct: 12 DYLESLPGTTFYKLYQQPSTALAIFRRMLPDLAKCFVMALLYLKDPLPATDLEAWVKAES 71
Query: 72 FTKHKVAIDRLVQLRLFSEEKKKETT--YRLNSTFQSNLQKHLINGGALPREPMPSGITA 129
+ A+ L +L + S + Y++ F S+L++ L + G+
Sbjct: 72 LKERDNALSILGRLHILSNTVITDNVRAYKVTDPFASSLRQALTGA----EKTQSFGVLW 127
Query: 130 RLP-----TLEDLEAYAIGQWECFLLQLISSAQ--AERPTNFSSSMMKVFQRGLLIQSIL 182
+ ++ +L+ YA QWE L ++ ++ +R N S + ++ Q G L++
Sbjct: 128 HISDGAAVSIAELDEYARRQWEGVLGYMVGTSGLGIQRDANLSKGVKQLLQAGHLVEIRD 187
Query: 183 RSLKFLCQG--------------------------------------------ILEAYNL 198
R ++ G + +AY+
Sbjct: 188 RRVEITQDGFAFVLQDVSTQVWHILMLYVESADAIGMSSVEVLSFVFLLSSLELGKAYDK 247
Query: 199 NTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM----------------SL 242
L+ Q + D AD G+V Q S F PT+LAT L+ S
Sbjct: 248 KHLTSNQLRTLTDLADFGIV-YQDSPDASHFYPTRLATTLTSDSSALSNPISGSLSGPSG 306
Query: 243 TDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFE 302
T S+ GF++VETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+ A E
Sbjct: 307 TGSNKAGSGFIIVETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAIE 366
Query: 303 NGITAEQIISFLQQNAHPRV------------ADRIPSV-PENVCDQIRLWESDLNRVEM 349
GITA+QIIS+L +AHP++ A PSV P V DQIRLW+ + +RV+
Sbjct: 367 MGITADQIISYLATHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVTDQIRLWQLERDRVKA 426
Query: 350 TPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQ 404
TP +++F S +EA C YA + L+W+ D K+M V H + FLR +
Sbjct: 427 TPGFLFKDFVSLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR---HEQVAAFLRSR 479
>gi|444727354|gb|ELW67853.1| Valyl-tRNA synthetase, mitochondrial [Tupaia chinensis]
Length = 1382
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 125/413 (30%), Positives = 215/413 (52%), Gaps = 39/413 (9%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L++ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 12 RVHLQCRNLQEFLGGLSSGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 71
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGGALPR 120
+ WV + + + L LR++ + LN F+ NL+ L+
Sbjct: 72 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLE------ 125
Query: 121 EPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAER-----------PTNFSSSMM 169
I A+ L+ Q F+LQ + +AQ+ +FS+
Sbjct: 126 ------IVAQFLLLD-----TPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGK 174
Query: 170 KVFQRGLL--IQSILRSLKFLCQ----GILEAYNLNTLSEIQRSMIKDFADLGLVKLQQG 223
+ +RG + + ++ L FL Q + + Y++ +S+ + ++ + GLV Q+
Sbjct: 175 RRGERGRVHTVMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRK 233
Query: 224 RKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIE 281
RK + PT+LA NLS +S +A + GF+VVETN+R+YAY+ S+L ++ LFS++
Sbjct: 234 RKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNYRLYAYTESELQIALIALFSEML 293
Query: 282 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWE 341
Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + + P +P + DQIRLWE
Sbjct: 294 YRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWE 353
Query: 342 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIH 394
+ +R+ T Y +F S+ FE +AR+ L++E+S K +VV H
Sbjct: 354 LERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGH 406
>gi|358370616|dbj|GAA87227.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus kawachii IFO 4308]
Length = 478
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 141/474 (29%), Positives = 217/474 (45%), Gaps = 95/474 (20%)
Query: 17 SLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKH 75
SL KLY+ P AI R LP LAK +V +LY+ +PA +E WV + +
Sbjct: 15 SLAGTVFYKLYQQPSTALAIFRRMLPDLAKCFVMALLYLKDPLPAADLEAWVKSESLKER 74
Query: 76 KVAIDRLVQLRLFSEEKKKETT--YRLNSTFQSNLQKHLING-------GALPREPMPSG 126
A+ L +L + S + Y++ F ++L +H + G G L P S
Sbjct: 75 DNALSILGRLHILSNTVTADNVRAYKVTDPFATSL-RHALTGADQTQSFGVLSHVPAGSE 133
Query: 127 ITARLPTLEDLEAYAIGQWECFLLQLISSAQAERP-TNFSSSMMKVFQRGLLIQSILRSL 185
++ + DL+ YA QWE L ++ + P S + ++ Q G L++ R +
Sbjct: 134 VS-----ISDLDEYARRQWEGVLGYMVGTGGMGAPQVTLSKGVKELLQAGHLVEIRDRRV 188
Query: 186 KFLCQG--------------------------------------------ILEAYNLNTL 201
+ G + ++Y N L
Sbjct: 189 EITQDGFAFVLQDVSTQVWHILILYVESASAIKMDSVEVLSFVFLLSSLELGKSYEKNHL 248
Query: 202 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL---SMSLTD-------------S 245
S Q M+ D AD G+V Q+ F PT+LAT L S +L++ S
Sbjct: 249 SSKQLRMLTDLADFGIV-YQESPDAPRFYPTRLATTLTSDSSALSNPLLGSLSGPAGEAS 307
Query: 246 SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGI 305
S GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+ A E GI
Sbjct: 308 SKAGTGFIIIETNYRVYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAVEMGI 367
Query: 306 TAEQIISFLQQNAHPRV------------ADRIPSV-PENVCDQIRLWESDLNRVEMTPA 352
TA+QIIS+L +AHP++ A PSV P V DQIRLW+ + +RV+ T
Sbjct: 368 TADQIISYLSTHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVVDQIRLWQLERDRVKATSG 427
Query: 353 HYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQN 405
+++F S +EA C YA + L W+ D K+M V H + FLR +
Sbjct: 428 FLFKDFVSLAEYEAPCRYAEEIGVLAWKSDRKRMFFVTR---HEQVAAFLRSRK 478
>gi|157113167|ref|XP_001651923.1| TFIIH basal transcription factor complex p52 subunit [Aedes
aegypti]
gi|108877858|gb|EAT42083.1| AAEL006356-PA [Aedes aegypti]
Length = 487
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 134/464 (28%), Positives = 221/464 (47%), Gaps = 70/464 (15%)
Query: 9 KNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVL 68
KN + + S L KLY P IC A+ R LP +A+++V ++L+++ AIP + W
Sbjct: 25 KNLEEYLKSRPPDALEKLYNYPAICLAVYRELPEIARQFVIRILFVEQAIPQAVVSSWG- 83
Query: 69 PDGFTKHKVAIDR-LVQLRLFSEEKKKET--TYRLNSTFQSNLQKHLINGGALPREPMPS 125
+ K V + R L +L ++ + L TF+ NL+ L+ GG
Sbjct: 84 SQVYAKENVLVSRVLTELGVWRTAGLTGGLEAWELCPTFKKNLKIALLGGGRPWSMSNAL 143
Query: 126 GITARLPTLEDLEAYAIGQWECFLLQLIS--SAQAERPTNFSSSMMKV------------ 171
+ +E L+AYA+ +W C L ++ S++ S +++
Sbjct: 144 DPDQKSRDIEFLDAYAMSRWRCVLHYMVGAGSSKGMEGEGISPDAVRILLHANLMKRDET 203
Query: 172 ----------FQ-----------------------RGLLIQ---SILRSLKFLCQGILEA 195
FQ RGL + S+L L F G
Sbjct: 204 DGSPVITRQGFQFLLLDTQAQVWHFMLQYLDTCEARGLDLAECLSMLFQLSFSTLG--RD 261
Query: 196 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------MSLTDSSAR 248
Y+ LS+ + ++ + GLV Q+ RKE F PT+LA N++ + SS +
Sbjct: 262 YSSEGLSQGLLTFLQHLREFGLV-YQRKRKEGRFYPTRLAHNITSKNAVQTIQEDGSSVQ 320
Query: 249 KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 308
+G+++VETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ AF GITAE
Sbjct: 321 DKGYIIVETNYRVYAYTDSNLQVALLGLFTELLYRFPNLVVGVLTRDSVRQAFRGGITAE 380
Query: 309 QIISFLQQNAHPRVADRIPSV------PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRD 362
QIIS+L+Q+AHP + + ++ P V DQI+LWE++ NR T Y +F S+
Sbjct: 381 QIISYLEQHAHPTMLNMEQAINSKSPLPPTVVDQIKLWENERNRFTYTEGVVYNQFLSQG 440
Query: 363 VFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
F DYA+ + W++ + +VV H ++ F + +K
Sbjct: 441 DFNTLRDYAQSIGVMTWQNERTRTMVVTKNGHDDVKRFWKRYSK 484
>gi|19113355|ref|NP_596563.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces pombe 972h-]
gi|62901133|sp|P87303.2|TFB2_SCHPO RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|3080538|emb|CAA18666.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces pombe]
Length = 447
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 122/429 (28%), Positives = 208/429 (48%), Gaps = 58/429 (13%)
Query: 25 KLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQ 84
+LY+ P C A+ R LP LA++YV ML+ + + W+ + ++LV+
Sbjct: 21 RLYQKPAACLAVFRLLPILARQYVMSMLFNPMPVALSDFDLWIKLSSKVYQSESFNKLVR 80
Query: 85 LRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMP-SGITARLPTLEDLEAYAIG 143
+ +F + + T LNS F+ L GG +P + L T++ L+AYA
Sbjct: 81 MHIFQFDGQYIT---LNSEFRKQFITALTGGGNHNSFGVPCTDEDKHLVTVDFLDAYAKE 137
Query: 144 QWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQS------ILRS-LKFLCQGI---- 192
WE L ++ + +A+ P ++ + +RG L+ I R+ +FL Q I
Sbjct: 138 TWETILHFMVGTPEAKFP---GEGVLSLLKRGGLMSGPKNQLRITRAGFQFLLQDINAQI 194
Query: 193 ---------------------------------LEAYNLNTLSEIQRSMIKDFADLGLVK 219
AY+++ L++ Q+ M++D + GLV
Sbjct: 195 WTLLLDYLKLSEDTHMDPVQVLHFLFMLGSLDLGRAYSVDFLTDTQQIMLEDLREYGLV- 253
Query: 220 LQQGRKESWFIPTKLATNLSMSLTDSSARK------EGFVVVETNFRMYAYSTSKLHCEI 273
Q+ F PT+LAT L+ ++ +GF++VETN+R+YAY++S L I
Sbjct: 254 YQRKITSKRFYPTRLATGLTTDYRSLHGKQSENDDDKGFIIVETNYRLYAYTSSPLQIAI 313
Query: 274 LRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENV 333
+ LF+ + + NL+VG IT++S+ A NGI AEQII++L +AHP++ +P +P +
Sbjct: 314 IGLFANLRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLTTHAHPQMRSNVPLLPPTL 373
Query: 334 CDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEI 393
DQI LWE + NR+ TP + +F + F+ A +YA++ L+W+ S K +
Sbjct: 374 VDQIYLWELEKNRLRATPGILFRDFLTDSGFDQAVEYAKELGVLVWDSSLKRMFFITTTG 433
Query: 394 HMHMREFLR 402
M +L+
Sbjct: 434 AQPMIAYLK 442
>gi|351713119|gb|EHB16038.1| General transcription factor IIH subunit 4 [Heterocephalus glaber]
Length = 463
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 134/452 (29%), Positives = 224/452 (49%), Gaps = 48/452 (10%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
+ +V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 10 LSRVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQ 69
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-A 117
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 70 AAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKA 129
Query: 118 LPREPMPSGITARLPTLEDLEAYAIGQWECFL---------------LQLIS------SA 156
+ G + L+ YA +WE L QL+S SA
Sbjct: 130 WSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSA 189
Query: 157 QAERPTNFSSS----------------MMKVFQ----RGLLIQSILRSLKFLCQGIL-EA 195
+ P +S+ M++ Q RG+ + IL L L L
Sbjct: 190 EPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGRD 249
Query: 196 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFV 253
Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + GF+
Sbjct: 250 YSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGSVHQPGFI 308
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII F
Sbjct: 309 VVETNYRLYAYTESELQVALIALFSEMLYRFPNVVVAQVTRESVQQAIGSGITAQQIIHF 368
Query: 314 LQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARD 373
L+ AHP + + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+
Sbjct: 369 LRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARE 428
Query: 374 RSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
L++E+S K +VV H ++ F + Q
Sbjct: 429 LGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|170039509|ref|XP_001847575.1| TFIIH basal transcription factor complex p52 subunit [Culex
quinquefasciatus]
gi|167863052|gb|EDS26435.1| TFIIH basal transcription factor complex p52 subunit [Culex
quinquefasciatus]
Length = 492
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 132/465 (28%), Positives = 224/465 (48%), Gaps = 70/465 (15%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
KN + + S L KLY P IC A+ R LP +A+++V ++L+++ IP + W
Sbjct: 29 CKNLEEYLRSRPPDALEKLYNYPAICLAVYRELPEIARQFVIRILFVEQPIPHAVVSSWG 88
Query: 68 LPDGFTKHKVAIDR-LVQLRLFSEEKKKET--TYRLNSTFQSNLQKHLINGGALPREPMP 124
+ K A+ + L +L ++ + L STF+ NL+ L+ GG
Sbjct: 89 -SQIYAKENTAVSKVLTELGVWRSTGLTGGLEGWELCSTFKKNLKIALLGGGRPWSMSNA 147
Query: 125 SGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTN-----------FSSSMMK--- 170
+ +E L+ YA+ +W C L ++ + ++ +++MK
Sbjct: 148 LDPDQKSRDIEFLDGYAMSRWRCVLHYMVGAGSSKGMEGEGISPDAVRILLHANLMKRDE 207
Query: 171 ----------VFQ-----------------------RGLLIQ---SILRSLKFLCQGILE 194
FQ RGL + S+L L F G
Sbjct: 208 TDGSPVITRQGFQFLLLDTQAQVWHFMLQYLDTCEARGLDLAECLSMLFQLSFSTLG--R 265
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------MSLTDSSA 247
Y+ LS+ + ++ + GLV Q+ RKE F PT+LA N++ + S+A
Sbjct: 266 DYSSEGLSQGLLTFLQHLREFGLV-YQRKRKEGRFYPTRLAHNITSRNAVPTIQEDGSAA 324
Query: 248 RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITA 307
+ +G++VVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ AF GITA
Sbjct: 325 QDKGYIVVETNYRVYAYTDSNLQVALLGLFTELLYRFPNLVVGVLTRDSVRQAFRGGITA 384
Query: 308 EQIISFLQQNAHP------RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR 361
+QIIS+L+Q+AHP + + ++P V DQI+LWE++ NR T Y +F S+
Sbjct: 385 DQIISYLEQHAHPTMHNVEQTINTKSALPPTVVDQIKLWENERNRFTYTEGVVYNQFLSQ 444
Query: 362 DVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
F DYA+ ++W++ + +VV H +++F + +K
Sbjct: 445 GDFNTLRDYAQSIGVMIWQNERTRTMVVTKNGHDDVKKFWKRYSK 489
>gi|344252968|gb|EGW09072.1| General transcription factor IIH subunit 4 [Cricetulus griseus]
Length = 463
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 133/444 (29%), Positives = 221/444 (49%), Gaps = 48/444 (10%)
Query: 9 KNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVL 68
+N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P + WV
Sbjct: 18 RNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVALWVK 77
Query: 69 PDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALPREPMPS 125
+ + + L LR++ + LN F+ NL+ L+ GG A +
Sbjct: 78 KEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDTSQL 137
Query: 126 GITARLPTLEDLEAYAIGQWECFL---------------LQLIS------SAQAERPTNF 164
G + L+ YA +WE L QL+S SA+ P
Sbjct: 138 GPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSAEPGEPPCI 197
Query: 165 SSS----------------MMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYNLNTLSE 203
+S+ M++ Q RG+ + IL L L L + Y++ +S+
Sbjct: 198 TSAGFQFLLLDTSAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSD 257
Query: 204 IQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRM 261
+ ++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VVETN+R+
Sbjct: 258 SLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGSVHQPGFIVVETNYRL 316
Query: 262 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR 321
YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP
Sbjct: 317 YAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPV 376
Query: 322 VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWED 381
+ + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+
Sbjct: 377 MLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFEN 436
Query: 382 SKKMRLVVNAEIHMHMREFLRGQN 405
S K +VV H ++ F + Q
Sbjct: 437 SAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|346464903|gb|AEO32296.1| hypothetical protein [Amblyomma maculatum]
Length = 436
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 212/429 (49%), Gaps = 57/429 (13%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
++ + +L+A L+KLY +P C A+ R LP ++++Y+ ++L+++ +P + W
Sbjct: 11 CRDLHAYLKTLSAATLDKLYTHPATCLAVFRELPIISRQYIMRLLFVEQPVPQAVISSWN 70
Query: 68 LPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGGA--LPREPM 123
H A++ L L ++++ + L++ F+ N+Q L+ GG P+
Sbjct: 71 EQKYVKDHLEALEALTALHIWTDASLPGGLPGWSLSAVFRKNIQIALLGGGKPWAVYNPL 130
Query: 124 PSGITARLPTLEDLEAYAIGQWECFLLQLIS-------SAQAERPTNFSSSM-------- 168
R T L+ YA+ +WEC L ++ SA A R + M
Sbjct: 131 EKDKHGRDATF--LDQYAVERWECVLHFMVGCHTTEGISADAVRILLHAGLMKSEEGEGS 188
Query: 169 -----MKVFQ-----------------------RGL-LIQ--SILRSLKFLCQGILEAYN 197
M+ FQ RGL L++ + L L FL G + Y+
Sbjct: 189 SPLITMEGFQFLLMDTPSQVWHFVLQYLDTIESRGLNLVECLTFLFQLSFLTLG--KDYS 246
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR--KEGFVVV 255
+SE ++ + GLV Q+ R+ F PT+LA NL+ L +++ R + G+++V
Sbjct: 247 TEGMSESLLVFLQHLREFGLV-YQRKRRSGRFYPTRLAINLASGLRETNLRSYEAGYIMV 305
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S+L +L LF ++ Y+ PNL+V +T+ES+ A +GIT+ QII FL+
Sbjct: 306 ETNYRVYAYTNSQLQVALLALFCELLYRFPNLVVARLTRESVRQALRSGITSNQIIKFLR 365
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
AHP + P +P + DQ+RLWE + +R Y +F S+ F+ +YA D
Sbjct: 366 MYAHPEALKQTPVIPATIMDQLRLWELERDRFVYREGVLYSQFISQSDFQLLRNYASDLG 425
Query: 376 GLLWEDSKK 384
L+W++ K
Sbjct: 426 VLIWDNPSK 434
>gi|403163300|ref|XP_003323393.2| hypothetical protein PGTG_04930 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163998|gb|EFP78974.2| hypothetical protein PGTG_04930 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 887
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 131/482 (27%), Positives = 223/482 (46%), Gaps = 98/482 (20%)
Query: 11 FMDMVASLTARDLNKLYENPFICEAILRSL--------------------PPLAKKYVFQ 50
F++ + LT L +LY P C AI RSL P +A+ V
Sbjct: 30 FLNALPKLT---LARLYNTPASCLAIFRSLTLSCLIDSSLIFCFSPSRLLPLIARHLVLN 86
Query: 51 MLYIDGAIPAKTMEEWVLPDGFTKHKVAID----RLVQLRLFSE-------------EKK 93
+L+ D +I +E W + ++ ++ +L +L + +
Sbjct: 87 LLWSDHSIDKSQLELWADINHSESRRIHVEDSLTKLFRLNIVEQSSLDSSSSSFDDPRNH 146
Query: 94 KETTYRLNSTFQSNLQKHLINGGALPREPMPSGITAR-LPTLEDLEAYAIGQWECFLLQL 152
T LN +FQ N ++ L GG +P ++ + ++++L+ Y +WE L +
Sbjct: 147 HHLTLTLNRSFQQNFRRALTGGGNHCSFGVPCNTSSNAVVSIDELDRYGTEKWETILHYM 206
Query: 153 ISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLK----------FLCQ------------ 190
+ S +P++ S++ Q GL+ S RSL+ FL +
Sbjct: 207 VGSRLPTKPSHNILSLLG--QSGLMTSSDPRSLQSLKITSKGFGFLLEDVNTQLWDILLQ 264
Query: 191 ----------------------GILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRK 225
G LE Y+ + + Q +++D D GLV + +
Sbjct: 265 YLKMTEVNGLDVVDVLACLFMLGSLELGQEYSFSNWTPTQTQVLQDLVDYGLVLVSAPDR 324
Query: 226 ESWFIPTKLATNLSMSL-----TDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKI 280
F PT+LAT L+ + + + + GF+V+ETN+R+YAY+++ L +L LF +
Sbjct: 325 ---FYPTRLATTLTSTAPPLVSAERAQEEHGFLVLETNYRIYAYTSNPLQIAVLNLFLSL 381
Query: 281 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLW 340
Y+ PNL+VGA+T+ES+ +A NGITA+Q+I +L +AHP++ P +P V DQIRLW
Sbjct: 382 RYRFPNLVVGAVTRESIKSALSNGITADQVIMYLHTHAHPQMRKLEPLLPPTVVDQIRLW 441
Query: 341 ESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 400
E + NR+ + YE+F S +++ Y+R +LWE + +L V + H+ +REF
Sbjct: 442 ELEKNRIRAQEGYLYEDFKSAAEYDSVIQYSRKLGIVLWEHAGLRKLFVGYDGHLTLREF 501
Query: 401 LR 402
R
Sbjct: 502 FR 503
>gi|325181847|emb|CCA16302.1| general transcription factor IIH subunit putative [Albugo laibachii
Nc14]
Length = 473
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 133/471 (28%), Positives = 228/471 (48%), Gaps = 87/471 (18%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLP-- 69
+ + +L L LY +P++C+A+ +SLP LA+++V ++L + + + + EW++
Sbjct: 4 FEFLETLPNATLESLYADPWVCQAVFQSLPSLAQQFVMRLLSCNTVVQEQVLREWLVTQV 63
Query: 70 ----------------DGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLI 113
D +H +I +L +LR+F++ +Y+L++ FQ L+ L
Sbjct: 64 QSDPGTSVGKEKAKSIDEIYQH--SIQKLRKLRVFTQSSTD--SYQLHAGFQKQLKYALC 119
Query: 114 NGGALP----REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTN------ 163
+ G P R + I + E LE YA W+ L ++ S P
Sbjct: 120 HLGGCPWEVGRRKLGKDIEVSFASTE-LERYARSHWDAVLHYMVGSTSVPDPPQAVVDIL 178
Query: 164 FSSSMMK--VFQRGL------------------------LIQSILRS--------LKFL- 188
+++M+ V QR L I+++ R+ L+FL
Sbjct: 179 LRTNLMQASVDQRALHITDKGYEFMLKDIHIQMWIFILEYIKTLDRTGALKQEDILRFLF 238
Query: 189 ----CQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTD 244
CQ + Y + L++ Q+ ++ DF + GL+ ++ + F T LA NL T
Sbjct: 239 QISYCQ-VNAYYPVQDLTKTQQLLLTDFNNFGLLYRKRSNSDR-FYTTSLAINLIFGGTT 296
Query: 245 SSARKEGFV-------------VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 291
+S E V +VETNF++YAY+TS LH +L +F I +LPNL +G
Sbjct: 297 TSNYSETQVARPRMSSMSDLLTIVETNFKVYAYTTSTLHIAMLSVFVDIVARLPNLAIGF 356
Query: 292 ITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTP 351
IT+ESL +A +GI+A+QI FL ++AHPR+ P VPEN+ DQI LWE + NR++
Sbjct: 357 ITRESLRSALVHGISAQQIYDFLLKHAHPRMKKNNPIVPENIADQIYLWEKERNRIKFLE 416
Query: 352 AHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
++ F S++ FE +YA+ + L W D ++L +++ +R F++
Sbjct: 417 GILFDGFNSKEEFEQVREYAQKQRFLTWTDPIHLKLAISSNGIESVRNFIQ 467
>gi|330918142|ref|XP_003298106.1| hypothetical protein PTT_08708 [Pyrenophora teres f. teres 0-1]
gi|311328891|gb|EFQ93800.1| hypothetical protein PTT_08708 [Pyrenophora teres f. teres 0-1]
Length = 482
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 132/431 (30%), Positives = 201/431 (46%), Gaps = 76/431 (17%)
Query: 25 KLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
KLYE P A+ R LP LAK V MLY+ PA ++ W P + + A L
Sbjct: 23 KLYEQPSTVLAVFRCMLPHLAKSIVMAMLYMPSPFPAADLDAWFKPSARKEKERATFTLD 82
Query: 84 QLRLFSEEKKKETT--YRLNSTFQSNLQKHLINGGALPRE---PMPSGITARLPTLEDLE 138
+L + + ++ T + L+ FQ +L ++ I G R P + + ++E L+
Sbjct: 83 RLHIITSVRQDNGTLSWTLSPGFQRSL-RNAIEGSGTHRSFGVPATKEESGKRVSVEFLD 141
Query: 139 AYAIGQWECFLLQLISSAQAERPTNFS-----SSMMKVFQRGLLIQSILRS-------LK 186
Y+ QWE L L+S A N S S + G L+++I S
Sbjct: 142 EYSRSQWEGILYYLVSGAAGLGKDNISRAEVSPSTKTLLNTGDLVRTIHGSPRITKDGFS 201
Query: 187 FLCQ----------------------------------GILE---AYNLNTLSEIQRSMI 209
F+ Q G LE Y+ +TLS Q M+
Sbjct: 202 FVLQETNAQVWSLLIIYLKVTNELGMSETEVLAFLFMLGSLELGQDYSTSTLSPTQLRML 261
Query: 210 KDFADLGLVKLQQGRKESWFIPTKLATNL--------SMSLTD-----------SSARKE 250
D + +GL+ + + F PT+LAT L S S D S+A +
Sbjct: 262 DDLSSMGLI-YRSDKNARTFYPTRLATTLTSDSGSAMSASSNDIAQAGQGNAGPSAAANK 320
Query: 251 GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQI 310
GF+++ETN+R+YAY+ S + IL LF+K++++ PNL+ G +TKES++ A ++GIT+ QI
Sbjct: 321 GFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESVHKAVQSGITSAQI 380
Query: 311 ISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 370
IS+L AHP++ +P +P V DQIRLWE + RVE TP + EF S + Y
Sbjct: 381 ISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETTPGYLMREFSSDTEYRDVMGY 440
Query: 371 ARDRSGLLWED 381
A L+W++
Sbjct: 441 ASALGVLVWQN 451
>gi|325181222|emb|CCA15636.1| general transcription factor IIH subunit putative [Albugo laibachii
Nc14]
Length = 1033
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 133/470 (28%), Positives = 228/470 (48%), Gaps = 87/470 (18%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLP--- 69
+ + +L L LY +P++C+A+ +SLP LA+++V ++L + + + + EW++
Sbjct: 52 EFLETLPNATLESLYADPWVCQAVFQSLPSLAQQFVMRLLSCNTVVQEQVLREWLVTQVQ 111
Query: 70 ---------------DGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLIN 114
D +H +I +L +LR+F++ +Y+L++ FQ L+ L +
Sbjct: 112 SDPGTSVGKEKAKSIDEIYQH--SIQKLRKLRVFTQSSTD--SYQLHAGFQKQLKYALCH 167
Query: 115 GGALP----REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTN------F 164
G P R + I + E LE YA W+ L ++ S P
Sbjct: 168 LGGCPWEVGRRKLGKDIEVSFASTE-LERYARSHWDAVLHYMVGSTSVPDPPQAVVDILL 226
Query: 165 SSSMMK--VFQRGL------------------------LIQSILRS--------LKFL-- 188
+++M+ V QR L I+++ R+ L+FL
Sbjct: 227 RTNLMQASVDQRALHITDKGYEFMLKDIHIQMWIFILEYIKTLDRTGALKQEDILRFLFQ 286
Query: 189 ---CQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS 245
CQ + Y + L++ Q+ ++ DF + GL+ ++ + F T LA NL T +
Sbjct: 287 ISYCQ-VNAYYPVQDLTKTQQLLLTDFNNFGLLYRKRSNSDR-FYTTSLAINLIFGGTTT 344
Query: 246 SARKEGFV-------------VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 292
S E V +VETNF++YAY+TS LH +L +F I +LPNL +G I
Sbjct: 345 SNYSETQVARPRMSSMSDLLTIVETNFKVYAYTTSTLHIAMLSVFVDIVARLPNLAIGFI 404
Query: 293 TKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPA 352
T+ESL +A +GI+A+QI FL ++AHPR+ P VPEN+ DQI LWE + NR++
Sbjct: 405 TRESLRSALVHGISAQQIYDFLLKHAHPRMKKNNPIVPENIADQIYLWEKERNRIKFLEG 464
Query: 353 HYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
++ F S++ FE +YA+ + L W D ++L +++ +R F++
Sbjct: 465 ILFDGFNSKEEFEQVREYAQKQRFLTWTDPIHLKLAISSNGIESVRNFIQ 514
>gi|260945437|ref|XP_002617016.1| hypothetical protein CLUG_02460 [Clavispora lusitaniae ATCC 42720]
gi|238848870|gb|EEQ38334.1| hypothetical protein CLUG_02460 [Clavispora lusitaniae ATCC 42720]
Length = 511
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 138/492 (28%), Positives = 223/492 (45%), Gaps = 124/492 (25%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
+KLY+ P C +I R LPPLAK Y+ M++ D + K +E+W P + RL
Sbjct: 23 SKLYDAPATCLSIFRLLPPLAKFYIVSMVFTDKPVAVKDLEKWCQPQARKLQYESFKRLR 82
Query: 84 QLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGI----TARLPT-LEDLE 138
L L EE + T RL+ TF++N + L A P GI + + P ++ L+
Sbjct: 83 ALHLI-EEDQSGTHVRLHQTFRNNFRDCLTGSQA----PNAFGIIVPGSDKHPIDVKFLD 137
Query: 139 AYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRS----------LKFL 188
+A +WE L ++ + E PT S S++ + + G L++ S +FL
Sbjct: 138 QFASQKWETILHFMVGT---ELPTVPSKSVLSLLKSGGLMEGHGTSAYSLKITNSGFQFL 194
Query: 189 CQ----------------------------------GILE---AYNLNTLSEIQRSMIKD 211
Q G LE AY +++LS+ Q SM+ D
Sbjct: 195 LQDVNVQIWTLLLEYLNLTQELNMDPVDVLNFIFILGSLELGKAYAVSSLSDTQLSMLPD 254
Query: 212 FADLGLVKLQQGRKESWFIPTKLATNLS--------------MSLTDSSARKE------- 250
D GLV Q+ + F PT+LAT L+ +L D A+ +
Sbjct: 255 LRDYGLV-YQRSENSTRFFPTRLATTLTSESTGLKTPSMALNQTLEDPGAKDQEHVTSEA 313
Query: 251 -----GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGI 305
G +++ETNF++YAY+ S L IL LF ++ + N+++G IT+ES+ A NGI
Sbjct: 314 GESQSGQIILETNFKLYAYTNSPLEIAILNLFVNLKVRFANMVIGQITRESIRKALYNGI 373
Query: 306 TAEQIISFLQQNAHPRV-------------------------------------ADRIPS 328
TA+QII FL+ +AH ++ R+
Sbjct: 374 TADQIIKFLETHAHSQMRTSAKEKLDKKIEFDASHNINTAGGAPQSKSSDSGVAQHRLEI 433
Query: 329 VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLV 388
+P NV DQI+LW+ +L+R++ + +++F +++ ++ C+YA + LLW D K+R
Sbjct: 434 LPPNVVDQIKLWQLELDRIQTFEGYLFKDFKNQNEYDVLCNYATEVGVLLWSDKTKLRFF 493
Query: 389 VNAEIHMHMREF 400
V AE + +F
Sbjct: 494 VTAEGMHQVADF 505
>gi|213402795|ref|XP_002172170.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces japonicus yFS275]
gi|212000217|gb|EEB05877.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces japonicus yFS275]
Length = 444
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 126/418 (30%), Positives = 203/418 (48%), Gaps = 58/418 (13%)
Query: 25 KLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQ 84
+LY+ P C AI R LP +A++YV ML+ + + W + ++LV+
Sbjct: 21 RLYQKPATCLAIFRLLPIIARQYVMAMLFNPSPVALNDFDLWTKLSSKVYQTESFNKLVR 80
Query: 85 LRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPT-LEDLEAYAIG 143
+ +F + + LNS F+ L GG +P R +E L+ YA
Sbjct: 81 MHIFQVDGQNVI---LNSEFRQQFITALTGGGTHNSFGVPCIDEDRQRVDIEFLDKYATD 137
Query: 144 QWECFLLQLISSAQAERPTNFSSSMMKVFQRG------------------LLIQSI---- 181
WE L ++ ++ + P ++ + +RG L+Q I
Sbjct: 138 TWETILHFMVGTSVKKIP---GEGVLSLLRRGGLMTGTKNQVRITHSGFQFLLQDINTQI 194
Query: 182 ------------------LRSLKFLCQ-GILEA---YNLNTLSEIQRSMIKDFADLGLVK 219
++ L FL G LE Y+++ L++ Q+ M++D + GLV
Sbjct: 195 WTLLLEYLKLSEDTHMDPVQVLHFLFMLGSLELGRDYSVHFLTDTQQIMLEDLREYGLV- 253
Query: 220 LQQGRKESWFIPTKLATNLSMSLTD-----SSARKEGFVVVETNFRMYAYSTSKLHCEIL 274
Q+ F PT+LAT+L+ S +GF++VETN+R+YAY+ S L IL
Sbjct: 254 YQKKSSSRRFYPTRLATSLTTEYHSPVKGAGSDAGKGFIIVETNYRLYAYTDSPLQIAIL 313
Query: 275 RLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVC 334
LF+ + + NLIVG IT++S+ A ++GITAEQII++L +AHP++ IP +P +
Sbjct: 314 GLFTNLRARFSNLIVGVITRDSIRRALQSGITAEQIITYLTTHAHPQMRKEIPLLPPTLV 373
Query: 335 DQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDS-KKMRLVVNA 391
DQI LWE + NR+ TP + +F + FE A YA++ L+W+ S K+M + NA
Sbjct: 374 DQIYLWELERNRLRATPGILFRDFLTDKDFEKAVQYAKELGVLVWDSSLKRMFFITNA 431
>gi|350639203|gb|EHA27557.1| transcription factor Tfb2 [Aspergillus niger ATCC 1015]
Length = 478
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 140/474 (29%), Positives = 219/474 (46%), Gaps = 95/474 (20%)
Query: 17 SLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKH 75
SL KLY+ P AI R LP LAK +V +LY+ +PA +E WV + +
Sbjct: 15 SLAGTVFYKLYQQPSTALAIFRRMLPDLAKCFVMALLYLKDPLPAADLEAWVKSESLKER 74
Query: 76 KVAIDRLVQLRLFSEEKKKETT--YRLNSTFQSNLQKHLING-------GALPREPMPSG 126
A+ L +L + S + Y++ F ++L +H + G G L + P+ S
Sbjct: 75 DNALSILGRLHILSNTVTADNVRAYKVTDPFATSL-RHALTGADQTQSFGVLSQVPVGSE 133
Query: 127 ITARLPTLEDLEAYAIGQWECFLLQLISSAQAERP-TNFSSSMMKVFQRGLLIQSILRSL 185
++ + +L+ YA QWE L ++ + P S + ++ Q G L++ R +
Sbjct: 134 VS-----IPELDEYARRQWEGVLGYMVGTGGMGGPQVTLSKGVKELLQAGHLVEIRDRRV 188
Query: 186 KFLCQG--------------------------------------------ILEAYNLNTL 201
+ G + ++Y N L
Sbjct: 189 EITQDGFAFVLQDVSTQVWHILILYVESASAIKMDSVEVLSFVFLLSSLELGKSYEKNHL 248
Query: 202 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL---SMSLTD-------------S 245
S Q M+ D AD G+V Q+ F PT+LAT L S +L++ S
Sbjct: 249 SSKQLRMLTDLADFGIV-YQESPDAPRFYPTRLATTLTSDSSALSNPLLGSLSGPAGEAS 307
Query: 246 SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGI 305
S GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+ A E GI
Sbjct: 308 SKAGTGFIIIETNYRVYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAVEMGI 367
Query: 306 TAEQIISFLQQNAHPRV------------ADRIPSV-PENVCDQIRLWESDLNRVEMTPA 352
TA+QIIS+L +AHP++ A PSV P V DQIRLW+ + +RV+ T
Sbjct: 368 TADQIISYLSTHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVVDQIRLWQLERDRVKATSG 427
Query: 353 HYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQN 405
+++F S +EA C YA + L W+ D K+M V H + FLR +
Sbjct: 428 FLFKDFVSLAEYEAPCRYAEEIGVLAWKSDRKRMFFVTR---HEQVAAFLRSRK 478
>gi|145248676|ref|XP_001400677.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus niger CBS 513.88]
gi|134081344|emb|CAK41847.1| unnamed protein product [Aspergillus niger]
Length = 478
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 141/474 (29%), Positives = 219/474 (46%), Gaps = 95/474 (20%)
Query: 17 SLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKH 75
SL KLY+ P AI R LP LAK +V +LY+ +PA +E WV + +
Sbjct: 15 SLAGTVFYKLYQQPSTALAIFRRMLPDLAKCFVMALLYLKDPLPAADLEAWVKSESLKER 74
Query: 76 KVAIDRLVQLRLFSEEKKKETT--YRLNSTFQSNLQKHLING-------GALPREPMPSG 126
A+ L +L + S + Y++ F ++L +H + G G L + +P+G
Sbjct: 75 DNALSILGRLHILSNTVTADNVRAYKVTDPFATSL-RHALTGADQTQSFGVLSQ--VPAG 131
Query: 127 ITARLPTLEDLEAYAIGQWECFLLQLISSAQAERP-TNFSSSMMKVFQRGLLIQSILRSL 185
+P L++ YA QWE L ++ + P S + ++ Q G L++ R +
Sbjct: 132 SEVSIPELDE---YARRQWEGVLGYMVGTGGMGGPQVTLSKGVKELLQAGHLVEIRDRRV 188
Query: 186 KFLCQG--------------------------------------------ILEAYNLNTL 201
+ G + ++Y N L
Sbjct: 189 EITQDGFAFVLQDVSTQVWHILILYVESASAIKMDSVEVLSFVFLLSSLELGKSYEKNHL 248
Query: 202 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL---SMSLTD-------------S 245
S Q M+ D AD G+V Q+ F PT+LAT L S +L++ S
Sbjct: 249 SSKQLRMLTDLADFGIV-YQESPDAPRFYPTRLATTLTSDSSALSNPLLGSLSGPAGEAS 307
Query: 246 SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGI 305
S GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+ A E GI
Sbjct: 308 SKAGTGFIIIETNYRVYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAVEMGI 367
Query: 306 TAEQIISFLQQNAHPRV------------ADRIPSV-PENVCDQIRLWESDLNRVEMTPA 352
TA+QIIS+L +AHP++ A PSV P V DQIRLW+ + +RV+ T
Sbjct: 368 TADQIISYLSTHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVVDQIRLWQLERDRVKATSG 427
Query: 353 HYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQN 405
+++F S +EA C YA + L W+ D K+M V H + FLR +
Sbjct: 428 FLFKDFVSLAEYEAPCRYAEEIGVLAWKSDRKRMFFVTR---HEQVAAFLRSRK 478
>gi|195162678|ref|XP_002022181.1| GL25529 [Drosophila persimilis]
gi|198464237|ref|XP_001353141.2| GA20571 [Drosophila pseudoobscura pseudoobscura]
gi|194104142|gb|EDW26185.1| GL25529 [Drosophila persimilis]
gi|198149631|gb|EAL30642.2| GA20571 [Drosophila pseudoobscura pseudoobscura]
Length = 494
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 135/455 (29%), Positives = 227/455 (49%), Gaps = 72/455 (15%)
Query: 19 TARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVA 78
TA L KLY P IC A+ R LP LA++++ ++L++D +P + W + A
Sbjct: 42 TAETLEKLYNYPPICLAVFRELPELARQFIIRILFVDQPVPQAVVTSWGAQRFAKEQTEA 101
Query: 79 IDRLVQLRLF--SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGIT----ARLP 132
L L ++ + + + L+ TF+ ++++ L+ GG +P P T ++
Sbjct: 102 TSCLSDLNVWRVTAIPGGLSAWELSPTFKKSVRQVLLGGG----KPWPMTNTLEKDSKPR 157
Query: 133 TLEDLEAYAIGQWECFLLQLISS-------AQAERPTN----FSSSMMKVFQRG------ 175
+ L++YA+ +W C L ++ + A+A P +++MK +R
Sbjct: 158 DIAFLDSYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAVRILLHANLMKRDERDGITITR 217
Query: 176 -----LLIQSILRSLKFL----------------CQGILEAYNLNTL-----SEIQRSMI 209
LL+ + + F+ C +L + +TL SE S +
Sbjct: 218 QGFQFLLLDTRAQVWHFMLQYLDTCEERGVSLPECLSMLFQLSFSTLGRDYSSEGMNSQM 277
Query: 210 KDF----ADLGLVKLQQGRKESWFIPTKLATNLS-------MSLTDSSARKE-GFVVVET 257
F + GLV Q+ RKE F PT+LA N++ M+++D A ++ G++VVET
Sbjct: 278 LSFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAATTMTVSDEEAMQDSGYIVVET 336
Query: 258 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 317
N+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+LQQ
Sbjct: 337 NYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLQQY 396
Query: 318 AHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 371
AHP V I S +P V DQI+LWE + NR T Y +F S++ F DYA
Sbjct: 397 AHPNMKLVESAIQSKSCLPPTVVDQIKLWEMERNRFTYTEGVVYNQFLSQNDFVTLRDYA 456
Query: 372 RDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+ L+W++ + +VV H ++ + + +K
Sbjct: 457 QSIHVLVWQNERTRTMVVQKHGHDDVKRYWKKYSK 491
>gi|189205068|ref|XP_001938869.1| RNA polymerase II transcription factor B subunit 2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985968|gb|EDU51456.1| RNA polymerase II transcription factor B subunit 2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 482
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 131/431 (30%), Positives = 200/431 (46%), Gaps = 76/431 (17%)
Query: 25 KLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
KLYE P A+ R LP LAK V MLY+ PA ++ W P + + A L
Sbjct: 23 KLYEQPSTVLAVFRCMLPHLAKSIVMAMLYMPSPFPAADLDAWFKPSARKEKERATFTLD 82
Query: 84 QLRLFSEEKKKETT--YRLNSTFQSNLQKHLINGGALPRE---PMPSGITARLPTLEDLE 138
+L + + ++ T + L+ FQ +L ++ I G R P + + ++E L+
Sbjct: 83 RLHIITSSRQDNGTLSWTLSPGFQRSL-RNAIEGSGTHRSFGVPATKEESGKRVSVEFLD 141
Query: 139 AYAIGQWECFLLQLISSAQAERPTNFS-----SSMMKVFQRGLLIQSILRS-------LK 186
Y+ QWE L L+S A N S S + G L+++I S
Sbjct: 142 EYSRAQWEGILYYLVSGAAGLGKDNISRAEVSPSTKTLLNTGDLVRTIHGSPRITKDGFS 201
Query: 187 FLCQ----------------------------------GILE---AYNLNTLSEIQRSMI 209
F+ Q G LE Y+ +TLS Q M+
Sbjct: 202 FVLQETNAQVWSLLIIYLKVTNELGMSETEVLAFLFMLGSLELGQDYSTSTLSPTQLRML 261
Query: 210 KDFADLGLVKLQQGRKESWFIPTKLATNL--------SMSLTD-----------SSARKE 250
D + +GL+ + + F PT+LAT L S S D S+ +
Sbjct: 262 DDLSSMGLI-YRSDKNARTFYPTRLATTLTSDSGSAMSASSNDIAQAGQGNAGPSATANK 320
Query: 251 GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQI 310
GF+++ETN+R+YAY+ S + IL LF+K++++ PNL+ G +TKES++ A ++GIT+ QI
Sbjct: 321 GFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESVHKAVQSGITSAQI 380
Query: 311 ISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 370
IS+L AHP++ +P +P V DQIRLWE + RVE TP + EF S + Y
Sbjct: 381 ISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETTPGYLMREFSSDAEYRDVMGY 440
Query: 371 ARDRSGLLWED 381
A L+W++
Sbjct: 441 ASALGVLVWQN 451
>gi|451996931|gb|EMD89397.1| hypothetical protein COCHEDRAFT_1141584 [Cochliobolus
heterostrophus C5]
Length = 482
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 136/451 (30%), Positives = 213/451 (47%), Gaps = 78/451 (17%)
Query: 25 KLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
KLYE P A+ R LP LAK V MLY+ PA ++ W P + + A L
Sbjct: 23 KLYEQPSTVLAVFRCMLPHLAKSIVMAMLYMPTPFPAADLDTWFKPTARKEKERATFTLD 82
Query: 84 QLRLFSEEKKKETT--YRLNSTFQSNLQKHLINGGALPRE---PMPSGITARLPTLEDLE 138
+L + + ++ T + LN FQ +L ++ I G R P + ++E L+
Sbjct: 83 RLHIITSARQDNGTLSWTLNPGFQRSL-RNAIEGSGTHRSFGVPATKEESGNRVSIEFLD 141
Query: 139 AYAIGQWECFLLQLISSAQAERPTNFSSSMM-----KVFQRGLLIQSILRS-------LK 186
Y+ QWE L L+S A + S + + K+ G L+++I S
Sbjct: 142 EYSRSQWEGILYYLVSGAAGLSKDSISRAEVGPGTKKLLHTGDLVRTIHGSPRITKDGFS 201
Query: 187 FLCQ----------------------------------GILE---AYNLNTLSEIQRSMI 209
F+ Q G LE Y+ +TLS Q M+
Sbjct: 202 FVLQETNAQVWSLLIVYLKMTNELGMSETEVLSFLFMLGSLELGQDYSTSTLSATQLQML 261
Query: 210 KDFADLGLVKLQQGRKESWFIPTKLATNLS------MSLTDS-------------SARKE 250
+D + +GLV + R F PT+LAT L+ MS + + +A +
Sbjct: 262 EDLSAMGLV-YRSDRNARTFYPTRLATTLTSDSGSAMSTSSNDIAQASTSTTGPPTAANK 320
Query: 251 GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQI 310
GF+++ETN+R+YAY+ S + IL LF+K++++ PNL+ G +TKES++ A + GIT+ QI
Sbjct: 321 GFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESVHKAVQAGITSAQI 380
Query: 311 ISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 370
IS+L AHP++ +P +P V DQIRLWE + RVE T + EF S + +Y
Sbjct: 381 ISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETTTGYLMREFGSDAEYRDVLNY 440
Query: 371 ARDRSGLLWE-DSKKMRLVVNAE-IHMHMRE 399
A L+W+ D+ + V + E I ++R+
Sbjct: 441 ASALGVLVWQNDANRCFFVSHVEQISAYLRK 471
>gi|451847848|gb|EMD61155.1| hypothetical protein COCSADRAFT_97372 [Cochliobolus sativus ND90Pr]
Length = 482
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 136/451 (30%), Positives = 213/451 (47%), Gaps = 78/451 (17%)
Query: 25 KLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
KLYE P A+ R LP LAK V MLY+ PA ++ W P + + A L
Sbjct: 23 KLYEQPSTVLAVFRCMLPHLAKSIVMAMLYMPTPFPAADLDTWFKPTARKEKERATFTLD 82
Query: 84 QLRLFSEEKKKETT--YRLNSTFQSNLQKHLINGGALPRE---PMPSGITARLPTLEDLE 138
+L + + ++ T + LN FQ +L ++ I G R P + + ++E L+
Sbjct: 83 RLHIITSARQDNGTLSWTLNPGFQRSL-RNAIEGSGTHRSFGVPATKEESGKRVSIEFLD 141
Query: 139 AYAIGQWECFLLQLISSAQAERPTNFSSSMM-----KVFQRGLLIQSILRS-------LK 186
Y+ QWE L L+S A + S + + K+ G L+++I S
Sbjct: 142 EYSRSQWEGILYYLVSGAAGLSKDSISRAEVGPGTKKLLHTGDLVRTIHGSPRITKDGFS 201
Query: 187 FLCQ----------------------------------GILE---AYNLNTLSEIQRSMI 209
F+ Q G LE Y+ +TLS Q M+
Sbjct: 202 FVLQETNAQVWSLLIVYLKMTNELGMSETEVLSFLFMLGSLELGQDYSTSTLSATQLQML 261
Query: 210 KDFADLGLVKLQQGRKESWFIPTKLATNLS------MSLTDS-------------SARKE 250
+D + +GLV + R F PT+LAT L+ MS + +A +
Sbjct: 262 EDLSAMGLVYRSE-RNARTFYPTRLATTLTSDSGSAMSASSKDIAQASTSTTGPPTAANK 320
Query: 251 GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQI 310
GF+++ETN+R+YAY+ S + IL LF+K++++ PNL+ G +TKES++ A + GIT+ QI
Sbjct: 321 GFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESVHKAVQAGITSAQI 380
Query: 311 ISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 370
IS+L AHP++ +P +P V DQIRLWE + RVE T + EF S + +Y
Sbjct: 381 ISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETTTGYLMREFGSDAEYRDVLNY 440
Query: 371 ARDRSGLLWE-DSKKMRLVVNAE-IHMHMRE 399
A L+W+ D+ + V + E I ++R+
Sbjct: 441 ASALGVLVWQNDANRCFFVSHVEQISAYLRK 471
>gi|328863850|gb|EGG12949.1| hypothetical protein MELLADRAFT_46475 [Melampsora larici-populina
98AG31]
Length = 454
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 128/447 (28%), Positives = 217/447 (48%), Gaps = 60/447 (13%)
Query: 7 IAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYID-GAIPAKTMEE 65
I+ + + + L + L++LYE+P C +I R LP LA+ + L+ + ++
Sbjct: 9 ISSSLSEFLHDLPEQTLSRLYESPSSCLSIFRLLPSLARHLILNSLWSSIHSFNLTQLKL 68
Query: 66 WVLPDGFTKHKVA---IDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREP 122
W F ++ + + +L+ L L + L+ TF+ N Q L GG
Sbjct: 69 WSTSIKFESNQSSQSTLAKLIHLHLI-----HSSNLTLHPTFKQNFQLALTGGGDHKSFG 123
Query: 123 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTN-----------FSSSMMKV 171
+P ++++ L L+ YA WE L ++ S + RP++ SS K+
Sbjct: 124 LPCKTSSKVDLLT-LDQYAKQNWETILHFMVGSNWSNRPSSKIITLLTFSGLISSQNSKI 182
Query: 172 FQRGL----------LIQSILRSLK---------------FLCQGILE---AYNLNTLSE 203
G L + +L+ LK G LE Y++ S+
Sbjct: 183 TSVGFQFLLDDINTQLWELLLQYLKMAEANDLDIVDVLSCLFMLGSLELGKEYSMKNFSD 242
Query: 204 IQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL--------TDSSARKEGFVVV 255
Q ++ D D GLV L Q + F PT+L T L+ + SS+ F+++
Sbjct: 243 TQVQVLNDLVDYGLVYLTQSKT---FYPTRLVTTLTSTAPPIVSNPSDQSSSDPNEFLIL 299
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+++ L IL LF + + PNL++G+IT+ES+ AF+NGI A+QIIS+L+
Sbjct: 300 ETNYRIYAYTSNPLQIAILNLFISFKSRFPNLVIGSITRESIKMAFKNGIRADQIISYLE 359
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
++H ++ P +P V DQIRLWE + NRV + YE+F S +E +Y++
Sbjct: 360 FHSHSQMKLLKPILPNTVVDQIRLWELEKNRVRDQEGYLYEDFKSVSDYEIVINYSKQID 419
Query: 376 GLLWEDSKKMRLVVNAEIHMHMREFLR 402
+LWE+ + + V+ + H +REF++
Sbjct: 420 IILWENPELKKFFVSLDGHTALREFIK 446
>gi|313245784|emb|CBY34779.1| unnamed protein product [Oikopleura dioica]
Length = 456
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 126/440 (28%), Positives = 232/440 (52%), Gaps = 43/440 (9%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MP++K+IA + + AR +++LY +P C ++ R LP +AK + ++L+I+ I
Sbjct: 15 MPELKLIA--LHEFLVKQDARVIDELYRHPATCMSVFRELPQIAKHIIIRILFINQQIAK 72
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPR 120
+E WV + K +VA++ + LR++ E + LN++F++ LQ+ L GG R
Sbjct: 73 PLIESWVADEHREKFEVAMEIITGLRIW-ENTNDGIAFNLNNSFRTYLQEALFGGGETWR 131
Query: 121 EPMPS-GITARLPTLEDLEAYAIGQWE---CFLLQ--------LIS--------SAQAER 160
+ + G T+E L+ Y +W+ FL Q +IS A E+
Sbjct: 132 PAVETLGADKNAKTVEQLDTYTKERWDQILSFLTQEQGKLSEEVISLLKYAGLCDANGEK 191
Query: 161 PTNF-----SSSMMKVFQRGL-----LIQSILRSLKFLCQGILEAYNL-----NTLSEIQ 205
F SS + + + L L S++ L F+ Q ++ N+ +EI
Sbjct: 192 RFQFLLLDRSSQVWYLLVQYLGYVQKLGLSLVNVLAFVLQLGYCSFGTDYPCDNSNNEIS 251
Query: 206 RSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS---LTDSSARKEGFVVVETNFRMY 262
R +I+ F ++GL+ ++ KE F PT+LA ++S++ S +E F++VETN+R+Y
Sbjct: 252 R-VIQHFREMGLI-FKRKSKEQRFYPTRLAQSISIAGGKKASSEDVQEQFILVETNYRIY 309
Query: 263 AYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV 322
AY+ S+LH ++ LF++++Y+ P +IV ++++S+ + + GI+AEQI+++L+ +AHP
Sbjct: 310 AYTDSELHYALISLFAEVQYRFPYMIVAQMSRDSIQQSADYGISAEQILNYLRSSAHPIA 369
Query: 323 ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDS 382
VP+ V D I LW + R++ Y +F ++ FE YA+D L+W +
Sbjct: 370 RKNKHWVPQVVEDNIHLWCKERERLKFNDGLLYHQFLDQEAFEMLKSYAQDIRALVWAND 429
Query: 383 KKMRLVVNAEIHMHMREFLR 402
++ +VV H ++ + +
Sbjct: 430 ERRFMVVAPWSHDQIKSYYK 449
>gi|70982185|ref|XP_746621.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2) [Aspergillus fumigatus Af293]
gi|66844244|gb|EAL84583.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus fumigatus Af293]
gi|159122143|gb|EDP47265.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus fumigatus A1163]
Length = 479
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 131/474 (27%), Positives = 217/474 (45%), Gaps = 84/474 (17%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDG 71
D + SL NKLY+ P AI R LP LAK +V +LY+ +PA +E WV P
Sbjct: 10 DYLESLPGTVFNKLYQQPSTALAIFRRMLPDLAKCFVMALLYLKDPLPAADLEAWVRPGS 69
Query: 72 FTKHKVAIDRLVQLRLFSEEKKKET--TYRLNSTFQSNLQKHLINGGALPREPMPSGITA 129
+ A+ L +L + + + Y + F S+L++ L + S I+
Sbjct: 70 LKERDNALSILGRLHIMTSTTTSDNIKAYTVTDPFASSLRQALTGAEQTQSFGVLSQISD 129
Query: 130 R-LPTLEDLEAYAIGQWECFLLQLISSAQ--AERPTNFSSSMMKVFQRGLLIQSILRSLK 186
+ ++ DL+ Y+ QWE L ++ ++ +R + S + ++ Q G L++ R ++
Sbjct: 130 KEAVSIADLDEYSRRQWEGVLGYMVGTSGLGMQRDVSLSKGVKELLQAGHLVEIRDRRVE 189
Query: 187 FLCQG--------------------------------------------ILEAYNLNTLS 202
G + ++Y L+
Sbjct: 190 ITQDGFAFALQDVGTQVWHILVLYVESAAAIGMDSVEVLSFVFFLSSLELGKSYEKKQLT 249
Query: 203 EIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM----------------SLTDSS 246
Q + D AD G+V Q+ + F PT+LAT L+ + T SS
Sbjct: 250 SNQLRTLTDLADFGIV-YQETPDATHFYPTRLATTLTSDSSTLSNPLAGSLSGPTGTSSS 308
Query: 247 ARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGIT 306
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+ A E GIT
Sbjct: 309 KAGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAVEMGIT 368
Query: 307 AEQIISFLQQNAHPRVADR-------------IPSVPENVCDQIRLWESDLNRVEMTPAH 353
A+QIIS+L +AHP++ + +P V DQIRLW+ + +RV+ T
Sbjct: 369 ADQIISYLSTHAHPQMRKHNVSRSTSNQAGMPVSVLPPTVVDQIRLWQLERDRVKATHGF 428
Query: 354 YYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQNK 406
+ +F + +EA C YA + L+W+ D K+M V H + FL+ + K
Sbjct: 429 LFRDFNTLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR---HHQVAAFLKSRRK 479
>gi|195019521|ref|XP_001984999.1| GH16811 [Drosophila grimshawi]
gi|193898481|gb|EDV97347.1| GH16811 [Drosophila grimshawi]
Length = 493
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 132/471 (28%), Positives = 221/471 (46%), Gaps = 80/471 (16%)
Query: 8 AKNFMDMVASL-TARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEW 66
KNF D + + T L KLY P IC A+ R LP +A+++V ++L++D +P + W
Sbjct: 28 CKNFQDYLRTRQTPESLEKLYNYPPICLAVFRELPEIARQFVIRILFVDQPVPQAVVSSW 87
Query: 67 VLPDGFTKHKVAIDRLVQLRLF--SEEKKKETTYRLNSTFQSNLQKHLINGG-------A 117
+ A L L ++ + + L+ TF+ ++++ L+ GG
Sbjct: 88 GAQRIAKEQMEATSCLTALNVWRVTAIPGGLAAWELSPTFKKSVRQVLLGGGKPWAMTNT 147
Query: 118 LPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTN------------FS 165
L ++ P I L+ YA+ +W C L ++ + T+
Sbjct: 148 LDKDSKPRDIAF-------LDTYAMARWRCVLHYMVGTGSRNGGTDAEAISPDAVRILLH 200
Query: 166 SSMMKVFQRG-----------LLIQSILRSLKFL----------------CQGILEAYNL 198
+++MK +R LL+ + + F+ C +L +
Sbjct: 201 ANLMKRDERDGITITRQGFQFLLLDTRAQVWHFMLQYLETCEERGFSLPECLSMLFQLSF 260
Query: 199 NTLSEIQRS---------MIKDFADLGLVKLQQGRKESWFIPTKLATNL--------SMS 241
+TL S ++ + GLV Q+ RKE F PT+LA N+ S S
Sbjct: 261 STLGRDYSSEGMSHQMLMFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTNKDAAQASTS 319
Query: 242 LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 301
D ++ G++VVETN+R+YAY+ S+L +L LF+++ Y+ PNL+VG +T++S+ A
Sbjct: 320 ADDERMQERGYIVVETNYRVYAYTDSQLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQAL 379
Query: 302 ENGITAEQIISFLQQNAHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYY 355
GITAEQI+S+L+Q AHP V I S +P V DQI+LWE + NR T Y
Sbjct: 380 RGGITAEQIVSYLEQYAHPNMKLVESAIQSKSCLPPTVVDQIKLWELERNRFTYTEGVVY 439
Query: 356 EEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+F S+ F DYA+ + L+W++ + +VV H ++ + + +K
Sbjct: 440 NQFLSQTDFVTLRDYAQSINMLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 490
>gi|339521903|gb|AEJ84116.1| general transcription factor IIH subunit 4 [Capra hircus]
Length = 463
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 132/450 (29%), Positives = 221/450 (49%), Gaps = 48/450 (10%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 12 RVHLQCRNLQEFLGGLSPGILDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 71
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 72 VALWVKKEFSKAQEESTGLLSGLRIWHAQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 131
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFL---------------LQLIS------SAQA 158
+ G + L+ YA +WE L QL+S SA+
Sbjct: 132 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSVAVSQDLAQLLSQAGLMKSAEP 191
Query: 159 ERPTNFSSS----------------MMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYN 197
P +S+ M++ Q RG+ + IL L L L + Y+
Sbjct: 192 GEPPCITSAGFQFLLLDTPAHLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYS 251
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVV 255
+ +S+ + ++ + GLV Q+ RK + PT+LA NLS +S +A + GF+VV
Sbjct: 252 VEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVV 310
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ +L + LFS++ Y+ PN++V +T+ S+ A +GITA+QI+ FL+
Sbjct: 311 ETNYRLYAYTEPELQIARIALFSEMLYRFPNMVVPQVTRGSVQQAIASGITAQQIVHFLR 370
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
A P + + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+
Sbjct: 371 TRADPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELG 430
Query: 376 GLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
L++E+S K +VV H ++ F + Q
Sbjct: 431 VLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|298705308|emb|CBJ48998.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 534
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 132/458 (28%), Positives = 208/458 (45%), Gaps = 90/458 (19%)
Query: 10 NFMDMVASLTARDLNKLY--------------ENPFICEAILRSLPPLAKKYVFQMLYID 55
N D + L L+KLY + C A+L+SLP LAK++V ++L+++
Sbjct: 22 NVFDYLERLPPDALDKLYGAAPPAADGQGGRSHGQWTCRALLQSLPQLAKQHVMRLLFVE 81
Query: 56 GAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLING 115
G + ++ WV + H ++ +LV LR+ + Y+LN F+ NLQ+ L
Sbjct: 82 GPVGKGMLKSWVKKEYQRVHAASVRKLVSLRVLLPSAGGQE-YQLNPPFRENLQRALCAS 140
Query: 116 GALP-REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPT---------NFS 165
P + +P PT+ +E QW+ L L+ S + R T S
Sbjct: 141 DKTPWQGDVPLSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEES 200
Query: 166 SSMMKVFQRG---------------------LLIQSILRS------------LKFLCQ-- 190
M V RG +++ +++ L FL Q
Sbjct: 201 GLMRPVRGRGALRITDKGYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLS 260
Query: 191 --GILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--- 245
+ +AY L L++ QR + +DF +LGL+ ++ K + F PT +A NL + S
Sbjct: 261 YCKVGDAYPLGALTQTQRDLAQDFVELGLL-FKRKAKSTRFYPTSIAVNLIFGSSPSGDA 319
Query: 246 -------------------SARKEG----FVVVETNFRMYAYSTSKLHCEILRLFSKIEY 282
++E ++VETNF++ AY+ SKLH +L LF ++
Sbjct: 320 GGAGGGGTQRKPQPAGGLGGGKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRA 379
Query: 283 QLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWES 342
LPN IVGAIT+ES+ A GI Q++ FL+ +AHP V R P VPEN+ DQ+ LWE
Sbjct: 380 LLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWER 439
Query: 343 DLNRVEMTPAHYYE-EFPSRDVFEAACDYARDRSGLLW 379
+ +R+E + + SRD F ++A + GLLW
Sbjct: 440 ERDRMEHRDGVLVDVSYASRDAFRGMTEFANAKQGLLW 477
>gi|50310215|ref|XP_455127.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|62901296|sp|Q6CLR2.1|TFB2_KLULA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|49644263|emb|CAG97834.1| KLLA0F01056p [Kluyveromyces lactis]
Length = 496
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 131/485 (27%), Positives = 218/485 (44%), Gaps = 100/485 (20%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGF 72
D + L + ++LYE+P C AI R L P+AK ++ ML+ D + + +++WV PD
Sbjct: 12 DYLEGLPEQVQSRLYESPATCLAIYRLLSPMAKFFIMSMLFQDHDVSLRDLDKWVKPDAK 71
Query: 73 TKHKVAIDRLVQLRLFSE-EKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARL 131
+ + +I + L L E E K+ RLN F+ + K+++ GG +
Sbjct: 72 YQLQYSIKSMKSLNLIIEGESKQPLLIRLNPIFKKSF-KNVLTGGEINNSFGDVADDDTN 130
Query: 132 P-TLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQR-GLLIQSILRSLKFLC 189
P + L+ Y+ +WE L ++ + P ++ + Q GL+ ++ LK
Sbjct: 131 PVSTATLDQYSAEKWETILHYMVGTPNTNTP---GGKVLDLLQHSGLMEEAEYGELKITN 187
Query: 190 QG--------------------------------------------ILEAYNLNTLSEIQ 205
QG + +AY + LS Q
Sbjct: 188 QGFQFLLQDVNAQMWTLLLQYLKMAESLQMDPVDVLNFIFMLGALQLGKAYKCDQLSNTQ 247
Query: 206 RSMIKDFADLGLVKLQQGRKESWFIPTKLAT-----------------------NLSMSL 242
R+M++D D GL+ Q + F PT+LAT N + ++
Sbjct: 248 RTMLQDMRDYGLI-YQNQSDYAKFYPTRLATLLTSDTKAFRSASVALDSVLNKANETTAV 306
Query: 243 TDSSARKE-------GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 295
S + E G +++ETNF++Y+YS S L IL LF ++ + N++ G +T+E
Sbjct: 307 EGDSGQDETTERTQDGALIIETNFKLYSYSNSPLQIAILSLFVHLKSRFANMVTGQLTRE 366
Query: 296 SLYNAFENGITAEQIISFLQQNAHPR------------------VADRIPSVPENVCDQI 337
S+ NA NGITAEQII++L+ +AHPR V + + +P V DQI
Sbjct: 367 SVRNALLNGITAEQIIAYLETHAHPRMRRLAEENLSKKLELDPTVKETLQVLPPTVVDQI 426
Query: 338 RLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHM 397
RLW+ +L+R+ + Y +F S ++ DYA+D LLW++ KK V+ E + +
Sbjct: 427 RLWQLELDRIISYDGYLYTDFESYQEYQTVADYAKDIGVLLWQNEKKKMFFVSTEGNSQV 486
Query: 398 REFLR 402
+F R
Sbjct: 487 LDFHR 491
>gi|295662078|ref|XP_002791593.1| RNA polymerase II transcription factor B subunit 2
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226279719|gb|EEH35285.1| RNA polymerase II transcription factor B subunit 2
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 484
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 137/475 (28%), Positives = 217/475 (45%), Gaps = 85/475 (17%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
MD + SL +LY+ P AI R LP LAK +V +LY+ +PA +E WV P+
Sbjct: 9 MDYLESLPGTVFRRLYQQPSTALAIFRRMLPYLAKYFVMALLYLKDPLPAADLELWVKPE 68
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKE--TTYRLNSTFQSNLQKHLINGGALPREPMPSGIT 128
+ A+ L +L + S + Y + F S+L++ L G +PS +T
Sbjct: 69 SKRERDNALSILGRLHILSNATTTDHVRAYVVTEPFASSLRQALTGGDKQQSFGVPS-VT 127
Query: 129 --ARLPTLEDLEAYAIGQWECFLLQLI--SSAQAERPTNFSSSMMKVFQRGLLIQSILRS 184
A L T+ L+ YA QWE L ++ S+ A++ S + ++ Q L++ R
Sbjct: 128 PDANLMTVAQLDEYASRQWEGVLGYMVGTSALGAQQTVTLSKGVKQLLQACHLVEVHDRR 187
Query: 185 LKFLCQGIL--------------------------------------------EAYNLNT 200
+ +G ++Y
Sbjct: 188 VDITKEGFAFVLQDVNTQVWNILILYVENAEQIGLESVEVLSFLFVLSSLELGQSYEKKH 247
Query: 201 LSEIQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNL-----------SMSLT----- 243
L+ Q + D D G+V +E+ F PT+L T L S SLT
Sbjct: 248 LTSTQLKTLTDLTDFGIVYQHFPPQEATRFYPTRLVTTLTSDSATLGSSISTSLTGPSGP 307
Query: 244 ---DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNA 300
+SS GF+V+ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+ A
Sbjct: 308 TAANSSEPSTGFIVIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSIRRA 367
Query: 301 FENGITAEQIISFLQQNAHPRVAD----------RIPSV-PENVCDQIRLWESDLNRVEM 349
E GITA+QIIS+L +AHP++ P+V P V DQIRLW+ + +R++
Sbjct: 368 VEMGITADQIISYLTTHAHPQMRKYHASKSSHTVGAPAVLPPTVVDQIRLWQLERDRIKA 427
Query: 350 TPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
TP +++F S F+ C YA + L+W+ K+ V H + +LR +
Sbjct: 428 TPGFLFKDFVSLAEFDGPCRYAEEIGVLVWKSEKRRMFFVTR--HEQVAAYLRSR 480
>gi|50557260|ref|XP_506038.1| YALI0F30173p [Yarrowia lipolytica]
gi|62901293|sp|Q6BZX4.1|TFB2_YARLI RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|49651908|emb|CAG78851.1| YALI0F30173p [Yarrowia lipolytica CLIB122]
Length = 467
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 124/456 (27%), Positives = 216/456 (47%), Gaps = 68/456 (14%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGF 72
D + L L +LY++P C A+ R LP LA+ + M++ I ++ V P
Sbjct: 11 DYLEGLPEAVLTRLYQSPATCLAVFRLLPALARTLIMGMIFNPDPIAVADVDALVKP--- 67
Query: 73 TKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLP 132
+ ++ ++ +LRL + + +N TF+ NL+ L+ G +P +
Sbjct: 68 SSQRLKLETQKKLRLLHIFTETQAHIIINPTFKKNLRAALVGGDQNISFGVPCDTEDKHK 127
Query: 133 T-LEDLEAYAIGQWECFLLQLISSAQAERPTNF------SSSMMKVFQRGLLIQSILRSL 185
+ L+A+A+ QWE L ++ ++ P++ S +M+ + GL I +
Sbjct: 128 VDVAFLDAHAVSQWEMILHFMVGTSIGRTPSDGVLNLLKHSGLMEPERGGLRITNA--GF 185
Query: 186 KFLCQ----------------------------------GILEA---YNLNTLSEIQRSM 208
+FL Q G LE Y+L+ LSE Q+ M
Sbjct: 186 QFLLQDVNAQIWTLLLQYLNMSEYLQMDPVDVLNFIFMLGSLELGQDYSLSALSETQKHM 245
Query: 209 IKDFADLGLVKLQQGRKESWFIPTKLATNLSM------------------SLTDSSARKE 250
++D D G+V Q+ F PT+LAT L+ +++ S A
Sbjct: 246 LEDLRDYGIV-YQRKASSRRFYPTRLATTLTSETAALRTASQSMEAATQDTISSSVAADS 304
Query: 251 GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQI 310
GF+++ETNFR+YAY+ S L +L LF ++ + N++ G I ++S+ A NGITAEQI
Sbjct: 305 GFIILETNFRLYAYTESPLQIAVLNLFVNLKTRFANMVTGQINRDSVRFALSNGITAEQI 364
Query: 311 ISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 370
I++L +AHPR+ +P V DQI+LW+ +++R+ T + + EF + D ++ Y
Sbjct: 365 ITYLSVHAHPRMKGMEHVLPPTVVDQIKLWQLEMDRIRATDGYLFSEFKNFDEYKDVSTY 424
Query: 371 ARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
A++ LL+E+ K + V + EF++ +N+
Sbjct: 425 AKELGVLLYENPGKRKFVSTLAGSQQIVEFVKRRNQ 460
>gi|261187837|ref|XP_002620336.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis SLH14081]
gi|239593453|gb|EEQ76034.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis SLH14081]
gi|239608433|gb|EEQ85420.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis ER-3]
gi|327356043|gb|EGE84900.1| RNA pol II transcription initiation subunit [Ajellomyces
dermatitidis ATCC 18188]
Length = 485
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 134/475 (28%), Positives = 214/475 (45%), Gaps = 84/475 (17%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
MD + SL +LY+ P AI R LP LAK +V +LY+ +PA +E WV P+
Sbjct: 9 MDYLESLPGTVFRRLYQQPSTALAIFRRMLPHLAKCFVMALLYLKDPLPAADLELWVKPE 68
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKETT--YRLNSTFQSNLQKHLINGGALPREPMPSGIT 128
+ A+ L +L + S + Y + F S+L++ L G +PS
Sbjct: 69 SKRERDNALSILGRLHILSNTTTSDNVRAYTVTDPFASSLRQALTGGNKQQSFGVPSLTA 128
Query: 129 ARLP-TLEDLEAYAIGQWECFLLQLI--SSAQAERPTNFSSSMMKVFQRGLLIQSILRSL 185
P T+ L+ YA QWE L ++ S+ ++ S + ++ Q L++ R +
Sbjct: 129 DENPMTVALLDDYARSQWEGVLGYMVGTSALGVQQAVTLSKGVKQLLQACHLVEIRDRRV 188
Query: 186 KFLCQG--------------------------------------------ILEAYNLNTL 201
+ G + ++Y L
Sbjct: 189 EITKDGFAFVLQDLNTQVWHILILYVENAEQIGMDSVEVLSFLFVLSSLELGQSYEKKHL 248
Query: 202 SEIQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNL-----------SMSLTDSSAR- 248
+ Q + D D G+V +E+ F PT+LAT L S SLT S
Sbjct: 249 TSTQLKTLADLTDFGIVYQHPPHQEATRFYPTRLATTLTSDSITLGSSISSSLTAPSGGP 308
Query: 249 -------KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 301
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G +T++S+ A
Sbjct: 309 AAVSNEPGTGFIIIETNYRLYAYTSSPLQISLISLFTTLKYRFPNLITGKLTRQSIRRAV 368
Query: 302 ENGITAEQIISFLQQNAHPRV-----------ADRIPSV-PENVCDQIRLWESDLNRVEM 349
E GITA+QIIS+L +AHP++ +P+V P V DQIRLW+ + +R++
Sbjct: 369 EMGITADQIISYLTTHAHPQMRKYHASKSGANPAGVPAVLPPTVVDQIRLWQLERDRIKA 428
Query: 350 TPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
TP +++F S FE C YA + LLW+ K+ V H + +LR +
Sbjct: 429 TPGFLFKDFVSLAEFEGPCRYAEEIGVLLWKSEKRRMFFVTR--HEQVAAYLRSR 481
>gi|119486893|ref|XP_001262366.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Neosartorya fischeri NRRL 181]
gi|119410523|gb|EAW20469.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Neosartorya fischeri NRRL 181]
Length = 468
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 130/476 (27%), Positives = 213/476 (44%), Gaps = 99/476 (20%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDG 71
D + SL NKLY+ P AI R LP LAK +V +LY+ +PA +E WV PD
Sbjct: 10 DYLESLPGTVFNKLYQQPSTALAIFRRMLPDLAKCFVMALLYLKDPLPAADLEAWVRPDS 69
Query: 72 FTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARL 131
H + + Y + F S+L++ L + G+ +++
Sbjct: 70 LKLH---------IMTSTTTSDNVKAYTVTDPFASSLRQALTGA----EQTQSFGVLSQI 116
Query: 132 P-----TLEDLEAYAIGQWECFLLQLISSAQ--AERPTNFSSSMMKVFQRGLLIQSILRS 184
++ DL+ YA QWE L ++ ++ +R + S + ++ Q G L++ R
Sbjct: 117 SDEEAVSIADLDEYARRQWEGVLGYMVGTSGLGMQRDVSLSKGVKELLQAGHLVEIRDRR 176
Query: 185 LKFLCQG--------------------------------------------ILEAYNLNT 200
++ G + ++Y
Sbjct: 177 VEITQDGFAFVLQDVGTQVWHILVLYVESAAAIGMDSVEVLSFVFFLSSLELGKSYEKKQ 236
Query: 201 LSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM----------------SLTD 244
L+ Q + D AD G+V Q+ + F PT+LAT L+ + T
Sbjct: 237 LTSNQLRTLTDLADFGIV-YQETPDATHFYPTRLATTLTSDSSTLSNPLAGSLSGPTGTS 295
Query: 245 SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 304
SS GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+ A E G
Sbjct: 296 SSKAGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAVEMG 355
Query: 305 ITAEQIISFLQQNAHPRVADR-------------IPSVPENVCDQIRLWESDLNRVEMTP 351
ITA+QIIS+L +AHP++ + +P V DQIRLW+ + +RV+ T
Sbjct: 356 ITADQIISYLSTHAHPQMRKHNVSRSTSNQAGMPVSVLPPTVVDQIRLWQLERDRVKATH 415
Query: 352 AHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQNK 406
+ +F + +EA C YA + L+W+ D K+M V H + FL+ + K
Sbjct: 416 GFLFRDFNTLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR---HHQVAAFLKSRRK 468
>gi|195378984|ref|XP_002048261.1| GJ11446 [Drosophila virilis]
gi|194155419|gb|EDW70603.1| GJ11446 [Drosophila virilis]
Length = 492
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 135/470 (28%), Positives = 229/470 (48%), Gaps = 79/470 (16%)
Query: 8 AKNFMDMVASL-TARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEW 66
KNF + + + T L KLY P IC A+ R LP +A+++V ++L+ID +P + W
Sbjct: 28 CKNFQEYLRTRQTPETLEKLYNYPPICLAVYRELPEIARQFVIRILFIDQPVPQAVVTSW 87
Query: 67 VLPDGFTKHKVAIDRLVQLRLF--SEEKKKETTYRLNSTFQSNLQKHLINGG-------A 117
+ A L L ++ + + L+ TF+ ++++ L+ GG
Sbjct: 88 GAQRVAKEQMEATSCLTALCVWRVTAIPGGLAAWELSPTFKKSVRQVLLGGGKPWAMTNT 147
Query: 118 LPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISS-------AQAERPTN----FSS 166
L R+ P I L++YA+ +W C L ++ + A+A P +
Sbjct: 148 LDRDSKPRDIAF-------LDSYAMSRWRCVLHYMVGTGSRGGTDAEAISPDAVRILLHA 200
Query: 167 SMMKVFQRG-----------LLIQSILRSLKFLCQ--------GILEAYNLNTLSEIQRS 207
++MK +R LL+ + + F+ Q GI L+ L ++ S
Sbjct: 201 NLMKRDERDGITITRQGFQFLLLDTRAQVWHFMLQYLETCEERGICLPECLSMLFQLSFS 260
Query: 208 MI-KDFA----------------DLGLVKLQQGRKESWFIPTKLATNL--------SMSL 242
+ +D++ + GLV Q+ RKE F PT+LA N+ S S
Sbjct: 261 TLGRDYSSEGMNNQMLTFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTNKDAAQASTSA 319
Query: 243 TDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFE 302
+ ++ G++VVETN+R+YAY+ S+L +L LF+++ Y+ PNL+VG +T++S+ A
Sbjct: 320 DEERMQERGYIVVETNYRVYAYTDSQLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALR 379
Query: 303 NGITAEQIISFLQQNAHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYE 356
GITAEQI+S+L+Q AHP V I S +P + DQI+LWE + NR T Y
Sbjct: 380 GGITAEQIVSYLEQYAHPNMKLVESAIQSKSCLPPTIVDQIKLWEMERNRFTYTEGVVYN 439
Query: 357 EFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+F S++ F DYA+ + L+W++ + +VV H ++ + + +K
Sbjct: 440 QFLSQNDFVTLRDYAQSINMLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 489
>gi|334323685|ref|XP_003340422.1| PREDICTED: valyl-tRNA synthetase, mitochondrial-like [Monodelphis
domestica]
Length = 1641
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/479 (27%), Positives = 221/479 (46%), Gaps = 79/479 (16%)
Query: 5 KIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTME 64
++ +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P +
Sbjct: 14 QLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVA 73
Query: 65 EWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALPRE 121
WV + + + L LR++ + LN F+ NL+ L+ GG A +
Sbjct: 74 LWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRVALLGGGKAWSDD 133
Query: 122 PMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA----------------------- 158
G + L+ YA +WE L ++ S A
Sbjct: 134 TSQLGPDKHARDVPSLDKYAEERWEVILHFMVGSPSAAVSQDLAQLLSQAGLMKSSEPGE 193
Query: 159 --------------ERPTNFSSSMMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYNLN 199
+ P M++ Q RG+ + IL L L L + Y++
Sbjct: 194 PPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVE 253
Query: 200 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVET 257
+S+ + ++ + GLV Q+ RK + PT+LA NLS +T + +A + GF+VVET
Sbjct: 254 GMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVTGAGGTAHQPGFIVVET 312
Query: 258 NFRMYAYST-------------------------------SKLHCEILRLFSKIEYQLPN 286
N+R+YAY+ S+L ++ LFS++ Y+ PN
Sbjct: 313 NYRLYAYTGEVGGMRMGIGMLEGRNCGFFGIILFFSLATESELQIALIALFSEMLYRFPN 372
Query: 287 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNR 346
++V IT+ES+ A NGITA+QII FL+ AHP + +IP +P + DQIRLWE + +R
Sbjct: 373 MVVAQITRESVQQAIANGITAQQIIHFLKTRAHPVMLKQIPVLPPTITDQIRLWELERDR 432
Query: 347 VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
+ + Y +F S+ FE +AR+ L++E++ K +VV H ++ F + Q
Sbjct: 433 LRFSEGVLYNQFLSQVDFELLLSHARELGVLVFENTAKRLMVVTPAGHSDVKRFWKRQK 491
>gi|440791255|gb|ELR12502.1| TFIIH basal transcription factor complex subunit 2, putative
[Acanthamoeba castellanii str. Neff]
Length = 304
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 147/226 (65%), Gaps = 6/226 (2%)
Query: 178 IQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATN 237
+ S L L FL G E Y ++ L+ + +++D DLG++ ++ R W PT+LA
Sbjct: 71 VLSFLFRLSFLTVG--EGYQMDDLAFSESGLLQDLQDLGII-YRKHRDSKWLYPTQLAIG 127
Query: 238 LSMSLTDSSAR-KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 296
LS T+++ R +EG+++V T++R+YAY++S + +L LF++IEYQLPN+++G + +E+
Sbjct: 128 LSS--TEAAKRDQEGWIIVGTDYRIYAYTSSPVKLLLLSLFTQIEYQLPNMVMGILLREN 185
Query: 297 LYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYE 356
+ A + GI+A QI+ FL+ NAHP++ P +PE++ DQ+RLWE++ R+ ++P ++Y+
Sbjct: 186 IRQAVQVGISANQILQFLETNAHPQMKQNTPIIPESIADQLRLWEAEDRRLSLSPGYFYD 245
Query: 357 EFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+F S F+ A YARD LL+ D+ K L V + H +R +++
Sbjct: 246 DFASLAAFKKAEKYARDVGALLYSDAAKRFLFVTEQGHQLLRRYVK 291
>gi|67541703|ref|XP_664619.1| hypothetical protein AN7015.2 [Aspergillus nidulans FGSC A4]
gi|40742471|gb|EAA61661.1| hypothetical protein AN7015.2 [Aspergillus nidulans FGSC A4]
gi|259483674|tpe|CBF79257.1| TPA: TFIIH and nucleotide excision repair factor 3 complexes
subunit (Tfb2), putative (AFU_orthologue; AFUA_4G04360)
[Aspergillus nidulans FGSC A4]
Length = 482
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 217/481 (45%), Gaps = 97/481 (20%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDG 71
D + SL KLY+ P AI R LP LAK +V +LY+ +PA +E WV +
Sbjct: 9 DYLESLPGTVFFKLYQQPSTALAIFRRMLPDLAKCFVMALLYLKDPLPAADLETWVRSES 68
Query: 72 FT-----KHKVAIDRLVQLRLFSEEKKKETT--YRLNSTFQSNLQKHLINGGALPREPMP 124
+ A+ L +L + + Y + F ++L++ L +E
Sbjct: 69 LRLSFLRERDSALSILGRLHILTNTTTSGNVRAYMVTDPFAASLRQALTGA----KETQS 124
Query: 125 SGITARLPT-----LEDLEAYAIGQWECFLLQLISSAQ--AERPTNFSSSMMKVFQRGLL 177
G+ +P + DL+ YA QWE L ++ ++ +R N S + ++ Q G L
Sbjct: 125 FGVLHHIPDDQTVPIHDLDEYARRQWEGVLGYMVGTSGLGIQRDVNLSKGVKQLLQAGHL 184
Query: 178 IQSILRSLKFLCQG--------------------------------------------IL 193
++ R ++ G +
Sbjct: 185 VEIRDRRVEITQDGFAFVLQDVGTQVWHILILYVESAEAIGMDSVEVLSFIFLLSSLELG 244
Query: 194 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT---------- 243
++Y L+ Q + D AD G+V Q + S F PT+LAT L+ +
Sbjct: 245 KSYEKKHLTSNQLRTLTDLADFGIV-YQDSPEASHFYPTRLATTLTSDSSALSNPISGAL 303
Query: 244 ------DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 297
DS+ GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G +T++S+
Sbjct: 304 SDPDGGDSNQPGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKVTRQSI 363
Query: 298 YNAFENGITAEQIISFLQQNAHPRV------------ADRIPSV-PENVCDQIRLWESDL 344
A E GITA+QIIS+L +AHP++ A PSV P V DQIRLW+ +
Sbjct: 364 RRAIEMGITADQIISYLATHAHPQMRKHNVARSTSNQAGMPPSVLPPTVVDQIRLWQLER 423
Query: 345 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRG 403
+RV+ T +++F S +EA C YA + L+W+ D K+M V H + FLR
Sbjct: 424 DRVKATAGFLFKDFVSLAEYEAPCRYAEEIGVLIWKSDRKRMFFVTR---HEQVAAFLRS 480
Query: 404 Q 404
+
Sbjct: 481 R 481
>gi|440636738|gb|ELR06657.1| hypothetical protein GMDG_00274 [Geomyces destructans 20631-21]
Length = 470
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 136/477 (28%), Positives = 221/477 (46%), Gaps = 83/477 (17%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIP 59
MP+ + + +++ + +T R +LYE P A+ R LP LAK +V MLY+ +
Sbjct: 1 MPESSLASFEYLEKLPGVTFR---RLYEQPSTALAVFRRMLPHLAKCFVMGMLYMPKPLL 57
Query: 60 AKTMEEWVLPDGFTKHKVAIDRLVQLRLFSE---EKKKETTYRLNSTFQSNLQKHLINGG 116
++ WV P G ++ A+ L +L + + + L F ++L+ L GG
Sbjct: 58 LSELDNWVRPGGKSEKGKALAILSRLHIVTSTAASRDGPPALNLTHNFATSLRLALTGGG 117
Query: 117 ALPREPMPSGITARLP-TLEDLEAYAIGQWECFLLQLISSAQ------AERPTNFSSSMM 169
+PS T T+ L+ YA QWE L +++S A+ P S+++
Sbjct: 118 DHGSFGIPSDSTQDSNITISFLDEYATAQWEGILHYVVNSTGDPSLLGAQYP---SANVR 174
Query: 170 KVFQRGLLIQSILR---------SLKFLCQ------------------------------ 190
++ Q G L+ S + FL Q
Sbjct: 175 QLLQMGTLVDSKGKYSGVGITQAGFSFLLQEANAQVWTVLLLWLEHAEELAMDHVDLLSF 234
Query: 191 ----GILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT 243
G LE AY+ TLS Q+SM+ AD GLV PT+LAT L+ S +
Sbjct: 235 FFLLGSLELGLAYSTTTLSTTQKSMLPILADFGLVYSPPSSSSF--FPTRLATTLTSSAS 292
Query: 244 ----------------DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 287
SS GF+V+ETN+R+YAY++S L +L LF+K+ + PN+
Sbjct: 293 ALRSIASGFSAAAASPASSGGTTGFIVIETNYRLYAYTSSPLQIAVLALFAKLSTRYPNM 352
Query: 288 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRV 347
+ G +T++S+ A E+GITA+QIIS+L +AHP++ + P +P V DQIRLW+ + R+
Sbjct: 353 VSGRVTRDSVRGAIEHGITADQIISYLTTHAHPQLRRKSPVLPPTVVDQIRLWQIENERM 412
Query: 348 EMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
+ T +++F S +E YA + L+W K V H +R++++ +
Sbjct: 413 KATAGFLFKDFASLAEYEGCVRYADEIGVLVWRSDAKRNFFVTK--HEQLRDYIKSR 467
>gi|407927340|gb|EKG20235.1| Transcription factor Tfb2 [Macrophomina phaseolina MS6]
Length = 466
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 127/437 (29%), Positives = 212/437 (48%), Gaps = 65/437 (14%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
++ + L+ +LY+ P A+ R LP LAK V MLY+ G PA ++ W+
Sbjct: 9 LEYLEGLSGATHKRLYQQPSAVLAVFRRMLPHLAKMIVMAMLYMPGPFPATELDTWIRDG 68
Query: 71 GFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGIT 128
+ AI L L + ++ E YR++S FQ++L++ L GG +P T
Sbjct: 69 SSGEKDKAISVLESLHIITQAQETVGARAYRISSGFQTSLRQALTGGGNHRSFGVPCMNT 128
Query: 129 -ARLPTLEDLEAYAIGQWECFLLQLISSAQ-----AERPTNFSSSMMKVFQ----RG--- 175
++ ++E L+ A +WE L ++ S T + ++++V Q RG
Sbjct: 129 GSKRVSIEALDEIARAKWETILQYMVGSTGTALGVGSEITTGTKTLLEVGQFIEMRGGRP 188
Query: 176 --------LLIQSI----------------------LRSLKFLCQ-GILE---AYNLNTL 201
L+Q + + L FL G LE Y+ ++L
Sbjct: 189 SITQGGFSFLLQEVNAQVWSLLIVYLENSHRLNMDNVDVLSFLFMLGSLELGQDYSTDSL 248
Query: 202 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL-------------SMSLTDSSAR 248
+ Q+ M+ D D G+V + K + F PT+LAT L S +L +SA
Sbjct: 249 TATQQHMLDDLNDFGIV-YRSPPKSNRFYPTRLATTLTSDAAALNNSDSFSSALNSTSAS 307
Query: 249 -KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITA 307
+G++++ETN+R+YAY++S L +L LF+ +E + PNL+ G +TKES+ A GITA
Sbjct: 308 GSKGYIIIETNYRLYAYTSSPLQIAVLALFTDLETRFPNLVSGKLTKESVQRAIGLGITA 367
Query: 308 EQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAA 367
+QIIS+L AHP++ + P +P V DQIRLW+ + +R+ T +++F D ++
Sbjct: 368 DQIISYLDTYAHPQMQRKTPVLPPTVVDQIRLWQIEGDRMRATEGFLFKDFRDWDEYQDL 427
Query: 368 CDYARDRSGLLWEDSKK 384
YA L+W + ++
Sbjct: 428 KKYADSIGVLVWSNDQR 444
>gi|194749905|ref|XP_001957376.1| GF10392 [Drosophila ananassae]
gi|190624658|gb|EDV40182.1| GF10392 [Drosophila ananassae]
Length = 497
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 128/456 (28%), Positives = 221/456 (48%), Gaps = 73/456 (16%)
Query: 19 TARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVA 78
T L KLY P IC A+ R LP +A++++ ++L++D +P + W + A
Sbjct: 44 TPETLEKLYNYPPICLAVFRELPEIARQFIIRILFVDQPVPQAVVSSWGAQRCAKEQTDA 103
Query: 79 IDRLVQLRLF--SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGIT----ARLP 132
L L ++ + + + L+ TF+ ++++ L+ GG +P P T ++
Sbjct: 104 TSCLTALNVWRVTAIPGGLSAWELSPTFKKSVRQVLLGGG----KPWPMTNTLEKDSKPR 159
Query: 133 TLEDLEAYAIGQWECFLLQLISSA-------QAERPTN----FSSSMMKVFQRG------ 175
+ L+ YA+ +W C L ++ + +A P +++MK +R
Sbjct: 160 DINFLDTYAMSRWRCVLHYMVGTGSRNGAETEAISPDAVRILLHANLMKRDERDGITITR 219
Query: 176 -----LLIQSILRSLKFL----------------CQGILEAYNLNTL-----SEIQRSMI 209
LL+ + + F+ C +L + +TL SE +
Sbjct: 220 QGFQFLLLDTRAQVWHFMLHYLDTCEERGMPLPECLSMLFQLSFSTLGRDYSSEGMNKQM 279
Query: 210 KDF----ADLGLVKLQQGRKESWFIPTKLATNLS---------MSLTDSSARKEGFVVVE 256
DF + GLV Q+ RKE F PT+LA N++ ++ + ++ G++VVE
Sbjct: 280 LDFLQHLREFGLV-YQRKRKEGRFYPTRLALNVTSKEAAVAATLTTDEEGVQESGYIVVE 338
Query: 257 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 316
TN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q
Sbjct: 339 TNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQ 398
Query: 317 NAHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 370
AHP V I S +P V DQI+LWE + NR T Y +F S++ F DY
Sbjct: 399 YAHPNMRLVESAIQSKSCLPPTVVDQIKLWEMERNRFTYTEGVVYNQFLSQNDFVTLRDY 458
Query: 371 ARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
A+ L+W++ + +VV H ++ + + +K
Sbjct: 459 AQSIHVLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 494
>gi|119179887|ref|XP_001241468.1| hypothetical protein CIMG_08631 [Coccidioides immitis RS]
gi|392866653|gb|EAS30172.2| transcription factor Tfb2 [Coccidioides immitis RS]
Length = 487
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 137/483 (28%), Positives = 217/483 (44%), Gaps = 98/483 (20%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
++ + SL KLY+ P AI R LP LAK +V +LY+ +PA +E WV
Sbjct: 9 LEYLESLPGTVFLKLYQQPSTALAIFRRMLPHLAKCFVMALLYLKDPLPAAELELWVKAG 68
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKE--TTYRLNSTFQSNLQKHLING------GALPREP 122
+ A+ L +L + S + Y + + F S+L++ L G G + P
Sbjct: 69 SKRERDNALSILSRLHILSSTTTSDHVRAYMVTNPFSSSLRQALTGGDKQHSFGVMSSMP 128
Query: 123 MPSGITARLPTLEDLEAYAIGQWECFLLQLISS----AQAERPTNFSSSMMKVFQRGLLI 178
P +T + DL+ YA QWE L ++ + Q E T S + + Q L+
Sbjct: 129 DPHPMT-----VSDLDDYARRQWEGVLGYMVGTNSLGIQRENVT-LSKGVKSLLQACHLV 182
Query: 179 QSILRSLKFLCQGIL--------------------------------------------E 194
+ R ++ +G +
Sbjct: 183 EVRDRRVEITKEGFAFVLQDVNTQVWHILILYVENAEAIGMDSVEVLSFLFLLSSLELGQ 242
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNL---SMSLTDS----- 245
+Y+ L+ Q + D D G+V ES F PT+LAT L SM+L+ S
Sbjct: 243 SYDKKHLTSTQLRTLADLTDFGIVYQHSPASESTRFYPTRLATTLTSDSMALSSSISGNL 302
Query: 246 -----------SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 294
A GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G +T+
Sbjct: 303 APAGPNINAATGAPGTGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKLTR 362
Query: 295 ESLYNAFENGITAEQIISFLQQNAHPRV------------ADRIPSV-PENVCDQIRLWE 341
+S+ A E GITA+QIIS+L +AHP++ A + SV P V DQIRLW+
Sbjct: 363 QSIRRAVEMGITADQIISYLTTHAHPQMRKVNASKSTSTTAGLLASVLPPTVVDQIRLWQ 422
Query: 342 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 401
+ +R++ TP +++F S FEA C YA + L+W+ K+ V H + FL
Sbjct: 423 LERDRLKATPGFLFKDFASSAEFEAPCRYAEEIGVLVWKSEKRRMFFVTR--HEQVAAFL 480
Query: 402 RGQ 404
R +
Sbjct: 481 RSR 483
>gi|115388809|ref|XP_001211910.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195994|gb|EAU37694.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 460
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 136/475 (28%), Positives = 214/475 (45%), Gaps = 104/475 (21%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
D + L KLY+ P AI R LP LAK +V +LY+ +PAK +E WV D
Sbjct: 9 FDYLEGLPGTVFQKLYQQPSTALAIFRRMLPDLAKCFVMALLYLKDPLPAKDLELWVKSD 68
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITAR 130
L+ ++ + Y + + F ++L++ L E G+ ++
Sbjct: 69 -------------SLKTLADNVR---AYIVTNPFATSLRQALTG----TEETQSFGVLSQ 108
Query: 131 LP-----TLEDLEAYAIGQWECFLLQLISSAQ--AERPTNFSSSMMKVFQRGLLIQSILR 183
LP T+ DL+ YA QWE L ++ ++ +R S + ++ Q G L++ R
Sbjct: 109 LPDHPPVTIADLDEYARRQWEGVLGYMVGTSGLGIQRDVTLSKGVKQLLQAGHLVEIRDR 168
Query: 184 SLKFLCQG--------------------------------------------ILEAYNLN 199
++ G + ++Y
Sbjct: 169 RVEITQDGFAFVLQDVSTQVWHILILYVESAEAIGMDSVEVLSFVFLLSSLELGKSYEKQ 228
Query: 200 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL-----------SMSL-----T 243
L+ Q + D AD G+V Q + F PT+LAT L S SL T
Sbjct: 229 HLTSNQLRTLTDLADFGIV-YQHSPDATHFYPTRLATTLTSDASSLSNPISGSLSGPDGT 287
Query: 244 DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFEN 303
S+ GF++VETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+ A E
Sbjct: 288 SSAKAGSGFIIVETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAIEM 347
Query: 304 GITAEQIISFLQQNAHPRV------------ADRIPSV-PENVCDQIRLWESDLNRVEMT 350
GITA+QIIS+L +AHP++ A PSV P V DQIRLW+ + +RV+ T
Sbjct: 348 GITADQIISYLATHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVVDQIRLWQLERDRVKAT 407
Query: 351 PAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
+++F S +E C YA + L+W+ ++K V H + FLR +
Sbjct: 408 AGFLFKDFASLAEYEDPCRYAEEIGVLVWKSNRKRMFFVTR--HEQVAAFLRSRK 460
>gi|225682227|gb|EEH20511.1| RNA polymerase II transcription factor B subunit 2
[Paracoccidioides brasiliensis Pb03]
gi|226289599|gb|EEH45083.1| TFIIH basal transcription factor complex p52 subunit
[Paracoccidioides brasiliensis Pb18]
Length = 484
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 135/475 (28%), Positives = 216/475 (45%), Gaps = 85/475 (17%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
MD + SL +LY+ P AI R LP LAK +V +LY+ +PA +E WV +
Sbjct: 9 MDYLESLPGTVFRRLYQQPSTALAIFRRMLPYLAKCFVMALLYLKDPLPAADLELWVKSE 68
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKE--TTYRLNSTFQSNLQKHLINGGALPREPMPSGIT 128
+ A+ L +L + S + Y + F S+L++ L G +PS +T
Sbjct: 69 SKRERDNALSILGRLHILSNATTTDHVRAYVVTEPFASSLRQALTGGDKQQSFGVPS-VT 127
Query: 129 --ARLPTLEDLEAYAIGQWECFLLQLISSA--QAERPTNFSSSMMKVFQRGLLIQSILRS 184
A L T+ L+ YA QWE L ++ ++ A++ S + ++ Q L++ R
Sbjct: 128 PDANLMTVAQLDEYASRQWEGVLGYMVGTSVLGAQQTVTLSKGVKQLLQACHLVEVHDRR 187
Query: 185 LKFLCQGIL--------------------------------------------EAYNLNT 200
+ +G ++Y
Sbjct: 188 VDITKEGFAFVLQDVNTQVWNILILYVENAEQIGLESVEVLSFLFVLSSLELGQSYEKKH 247
Query: 201 LSEIQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNL-----------SMSLT----- 243
L+ Q + D D G+V +E+ F PT+L T L S SLT
Sbjct: 248 LTSTQLKTLTDLTDFGIVYQHFPPQEATRFYPTRLVTTLTSDSATLGSSISTSLTGPSGP 307
Query: 244 ---DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNA 300
+SS GF+V+ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+ A
Sbjct: 308 AAANSSEPSTGFIVIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSIRRA 367
Query: 301 FENGITAEQIISFLQQNAHPRVAD----------RIPSV-PENVCDQIRLWESDLNRVEM 349
E GITA+QIIS+L +AHP++ P+V P V DQIRLW+ + +R++
Sbjct: 368 VEMGITADQIISYLTTHAHPQMRKYHASKSSHTVGAPAVLPPTVVDQIRLWQLERDRIKA 427
Query: 350 TPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
TP +++F S F+ C YA + L+W+ K+ V H + +LR +
Sbjct: 428 TPGFLFKDFVSLAEFDGPCRYAEEIGVLVWKSEKRRMFFVTR--HEQVAAYLRSR 480
>gi|31201525|ref|XP_309710.1| AGAP010984-PA [Anopheles gambiae str. PEST]
gi|21293295|gb|EAA05440.1| AGAP010984-PA [Anopheles gambiae str. PEST]
Length = 501
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 125/466 (26%), Positives = 225/466 (48%), Gaps = 70/466 (15%)
Query: 9 KNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVL 68
K+ + + S L KLY P IC A+ R LP +A+++V ++L+++ IP + W
Sbjct: 35 KDLEEYLKSRPPEVLEKLYNYPAICLAVYRELPEIARQFVIRILFVEQPIPQAVVSSWA- 93
Query: 69 PDGFTKHKVAIDR-LVQLRLFSEEKKKE--TTYRLNSTFQSNLQKHLINGGALPREPMPS 125
+ K ++ + L +L ++ + L TF+ NL+ L+ GG
Sbjct: 94 TQVYAKENTSVSQVLTELGVWRSAAYPGGLAAWELCPTFKKNLKIALLGGGRPWSMSNAL 153
Query: 126 GITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTN-----------FSSSMMK---- 170
+ ++ L+ YA+ +W C L ++ + ++ +++MK
Sbjct: 154 DPDQKSRDIDFLDTYAMSRWRCVLHYMVGAGSSKGMEGEGISPDAVRILLHANLMKRDES 213
Query: 171 -----VFQRG---LLIQSILRSLKFLCQGI--LEAYNLN-----------TLSEIQR--- 206
+ ++G LL+ + + F+ Q + EA LN + S + R
Sbjct: 214 DGSPVITRQGFQFLLLDTQAQVWHFMLQYLDTCEARGLNLPECLSMLFQLSFSTLGRDYS 273
Query: 207 ---------SMIKDFADLGLVKLQQGRKESWFIPTKLA-----------TNLSMSLTDSS 246
+ ++ + GLV Q+ RKE F PT+LA T L+ ++
Sbjct: 274 SEGLSPGLLTFLQHLREFGLV-YQRKRKEGRFYPTRLAHNITSKNATHATTLAQDQESNA 332
Query: 247 ARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGIT 306
+ +G+++VETN+R+YAY+ S L +L LF+++ Y+ PNL+VG ++++S+ AF GIT
Sbjct: 333 TKDKGYIIVETNYRVYAYTDSNLQVALLGLFTELLYRFPNLVVGVLSRDSVRQAFRGGIT 392
Query: 307 AEQIISFLQQNAHP------RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPS 360
AEQIIS+L+Q+AHP + + S+P V DQI+LWE++ NR T Y +F S
Sbjct: 393 AEQIISYLEQHAHPTMLTVEQAINSKSSLPPTVVDQIKLWENERNRFTYTEGVVYNQFLS 452
Query: 361 RDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+ F DYA+ ++W++ + +VV H +++F + +K
Sbjct: 453 QADFITLRDYAQSIGVMIWQNERIRTMVVTKNGHDDVKKFWKRYSK 498
>gi|195477975|ref|XP_002086439.1| GE22863 [Drosophila yakuba]
gi|194186229|gb|EDW99840.1| GE22863 [Drosophila yakuba]
Length = 499
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 130/456 (28%), Positives = 221/456 (48%), Gaps = 73/456 (16%)
Query: 19 TARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVA 78
T L KLY P IC A+ R LP +A++++ ++L++D +P + W + A
Sbjct: 46 TPETLEKLYNYPPICLAVFRELPEIARQFIIRILFVDQPVPQAVVTSWGAQRCAKEQAEA 105
Query: 79 IDRLVQLRLF--SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGIT----ARLP 132
L L ++ + + + L+ TF+ ++++ L+ GG +P P T ++
Sbjct: 106 TSCLTALNVWRVTAIPGGLSAWELSPTFKKSVRQVLLGGG----KPWPMTNTLEKDSKPR 161
Query: 133 TLEDLEAYAIGQWECFLLQLISS-------AQAERPTN----FSSSMMKVFQRG------ 175
+ L+ YA+ +W C L ++ + A+A P +++MK +R
Sbjct: 162 DIAFLDTYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAVRILLHANLMKRDERDGITITR 221
Query: 176 -----LLIQSILRSLKFL----------------CQGILEAYNLNTL-----SEIQRSMI 209
LL+ + + F+ C +L + +TL SE S +
Sbjct: 222 QGFQFLLLDTRAQVWHFMLQYLDTCEERGISLPECLSMLFQLSFSTLGRDYSSEGMNSQM 281
Query: 210 KDF----ADLGLVKLQQGRKESWFIPTKLATNL---------SMSLTDSSARKEGFVVVE 256
F + GLV Q+ RKE F PT+LA N+ S+++ + + + G++VVE
Sbjct: 282 LTFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVE 340
Query: 257 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 316
TN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q
Sbjct: 341 TNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQ 400
Query: 317 NAHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 370
AHP V I S +P V DQI+LWE + NR T Y +F S F DY
Sbjct: 401 YAHPNMRLVESAIQSKSCLPPTVVDQIKLWELERNRFTYTEGVVYNQFLSHTDFVTLRDY 460
Query: 371 ARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
A+ L+W++ + +VV H ++ + + +K
Sbjct: 461 AQSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 496
>gi|195327811|ref|XP_002030611.1| GM24480 [Drosophila sechellia]
gi|194119554|gb|EDW41597.1| GM24480 [Drosophila sechellia]
Length = 499
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 127/456 (27%), Positives = 219/456 (48%), Gaps = 73/456 (16%)
Query: 19 TARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVA 78
T L KLY P IC A+ R LP +A++++ ++L++D +P + W + A
Sbjct: 46 TPESLEKLYNYPPICLAVFRELPEIARQFIIRILFVDQPVPQAVVTSWGAQRCAKEQAEA 105
Query: 79 IDRLVQLRLF--SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGIT----ARLP 132
L L ++ + + + L+ TF+ ++++ L+ GG +P P T ++
Sbjct: 106 TSCLTALNVWRVTAIPGGLSAWELSPTFKKSVRQVLLGGG----KPWPMTNTLDKDSKPR 161
Query: 133 TLEDLEAYAIGQWECFLLQLISS-------AQAERPTN----FSSSMMKVFQRG------ 175
+ L+ YA+ +W C L ++ + A+A P +++MK +R
Sbjct: 162 DIAFLDTYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAVRILLHANLMKRDERDGITITR 221
Query: 176 -----LLIQSILRSLKFL----------------CQGILEAYNLNTLSEIQRS------- 207
LL+ + + F+ C +L + +TL S
Sbjct: 222 QGFQFLLLDTRAQVWHFMLQYLDTCEERGISLPECLSMLFQLSFSTLGRDYSSEGMNSQM 281
Query: 208 --MIKDFADLGLVKLQQGRKESWFIPTKLATNL---------SMSLTDSSARKEGFVVVE 256
++ + GLV Q+ RKE F PT+LA N+ S+++ + + + G++VVE
Sbjct: 282 LTFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVE 340
Query: 257 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 316
TN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q
Sbjct: 341 TNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQ 400
Query: 317 NAHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 370
AHP V I S +P V DQI+LWE + NR T Y +F S F DY
Sbjct: 401 YAHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDFVTLRDY 460
Query: 371 ARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
A+ L+W++ + +VV H ++ + + +K
Sbjct: 461 AQSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 496
>gi|194872905|ref|XP_001973103.1| GG13537 [Drosophila erecta]
gi|190654886|gb|EDV52129.1| GG13537 [Drosophila erecta]
Length = 499
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 130/456 (28%), Positives = 221/456 (48%), Gaps = 73/456 (16%)
Query: 19 TARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVA 78
T L KLY P IC A+ R LP +A++++ ++L++D +P + W + A
Sbjct: 46 TPETLEKLYNYPPICLAVFRELPEIARQFIIRILFVDQPVPQAVVTSWGAQRCAKEQAEA 105
Query: 79 IDRLVQLRLF--SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGIT----ARLP 132
L L ++ + + + L+ TF+ ++++ L+ GG +P P T ++
Sbjct: 106 TSCLTALNVWRVTAIPGGLSAWELSPTFKKSVRQVLLGGG----KPWPMTNTLEKDSKPR 161
Query: 133 TLEDLEAYAIGQWECFLLQLISS-------AQAERPTN----FSSSMMKVFQRG------ 175
+ L+ YA+ +W C L ++ + A+A P +++MK +R
Sbjct: 162 DIAFLDTYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAVRILLHANLMKRDERDGITITR 221
Query: 176 -----LLIQSILRSLKFL----------------CQGILEAYNLNTL-----SEIQRSMI 209
LL+ + + F+ C +L + +TL SE S +
Sbjct: 222 QGFQFLLLDTRAQVWHFMLQYLDTCEERGISLPECLSMLFQLSFSTLGRDYSSEGMNSQM 281
Query: 210 KDF----ADLGLVKLQQGRKESWFIPTKLATNL---------SMSLTDSSARKEGFVVVE 256
F + GLV Q+ RKE F PT+LA N+ S+++ + + + G++VVE
Sbjct: 282 LTFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVE 340
Query: 257 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 316
TN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q
Sbjct: 341 TNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQ 400
Query: 317 NAHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 370
AHP V I S +P V DQI+LWE + NR T Y +F S F DY
Sbjct: 401 YAHPNMRMVESAIQSKSCLPPTVVDQIKLWELERNRFTYTEGVVYNQFLSHTDFVTLRDY 460
Query: 371 ARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
A+ L+W++ + +VV H ++ + + +K
Sbjct: 461 AQSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 496
>gi|21357821|ref|NP_648780.1| marionette [Drosophila melanogaster]
gi|7294263|gb|AAF49614.1| marionette [Drosophila melanogaster]
gi|220942562|gb|ACL83824.1| Tfb2-PA [synthetic construct]
Length = 499
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 127/456 (27%), Positives = 219/456 (48%), Gaps = 73/456 (16%)
Query: 19 TARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVA 78
T L KLY P IC A+ R LP +A++++ ++L++D +P + W + A
Sbjct: 46 TPESLEKLYNYPPICLAVFRELPEIARQFIIRILFVDQPVPQAVVTSWGAQRCAKEQAEA 105
Query: 79 IDRLVQLRLF--SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGIT----ARLP 132
L L ++ + + + L+ TF+ ++++ L+ GG +P P T ++
Sbjct: 106 TSCLTALNVWRVTAIPGGLSAWELSPTFKKSVRQVLLGGG----KPWPMTNTLDKDSKPR 161
Query: 133 TLEDLEAYAIGQWECFLLQLISS-------AQAERPTN----FSSSMMKVFQRG------ 175
+ L+ YA+ +W C L ++ + A+A P +++MK +R
Sbjct: 162 DIAFLDTYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAVRILLHANLMKRDERDGITITR 221
Query: 176 -----LLIQSILRSLKFL----------------CQGILEAYNLNTLSEIQRS------- 207
LL+ + + F+ C +L + +TL S
Sbjct: 222 QGFQFLLLDTRAQVWHFMLQYLDTCEERGISLPECLSMLFQLSFSTLGRDYSSEGMNSQM 281
Query: 208 --MIKDFADLGLVKLQQGRKESWFIPTKLATNL---------SMSLTDSSARKEGFVVVE 256
++ + GLV Q+ RKE F PT+LA N+ S+++ + + + G++VVE
Sbjct: 282 LTFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVE 340
Query: 257 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 316
TN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q
Sbjct: 341 TNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQ 400
Query: 317 NAHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 370
AHP V I S +P V DQI+LWE + NR T Y +F S F DY
Sbjct: 401 YAHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDFVTLRDY 460
Query: 371 ARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
A+ L+W++ + +VV H ++ + + +K
Sbjct: 461 AQSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 496
>gi|195590491|ref|XP_002084979.1| GD12553 [Drosophila simulans]
gi|194196988|gb|EDX10564.1| GD12553 [Drosophila simulans]
Length = 500
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 126/457 (27%), Positives = 219/457 (47%), Gaps = 74/457 (16%)
Query: 19 TARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVA 78
T L KLY P IC A+ R LP +A++++ ++L++D +P + W + A
Sbjct: 46 TPESLEKLYNYPPICLAVFRELPEIARQFIIRILFVDQPVPQAVVTSWGAQRCAKEQAEA 105
Query: 79 IDRLVQLRLF--SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGIT----ARLP 132
L L ++ + + + L+ TF+ ++++ L+ GG +P P T ++
Sbjct: 106 TSCLTALNVWRVTAIPGGLSAWELSPTFKKSVRQVLLGGG----KPWPMTNTLDKDSKPR 161
Query: 133 TLEDLEAYAIGQWECFLLQLISS-------AQAERPTN----FSSSMMKVFQRG------ 175
+ L+ YA+ +W C L ++ + A+A P +++MK +R
Sbjct: 162 DIAFLDTYAMSRWRCVLHYMVGTGNRSGTDAEAISPDAVRILLHANLMKRDERDGITITR 221
Query: 176 -----LLIQSILRSLKFLCQGILEA--------------YNLNTLSEIQR---------- 206
LL+ + + F+ Q + + L S + R
Sbjct: 222 QGFQFLLLDTRAQVWHFMLQYLDTCEERGISLPECLSMLFQLTQFSTLGRDYSSEGMNNQ 281
Query: 207 --SMIKDFADLGLVKLQQGRKESWFIPTKLATNL---------SMSLTDSSARKEGFVVV 255
+ ++ + GLV Q+ RKE F PT+LA N+ S+++ + + + G++VV
Sbjct: 282 MLTFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVV 340
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+
Sbjct: 341 ETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLE 400
Query: 316 QNAHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 369
Q AHP V I S +P V DQI+LWE + NR T Y +F S F D
Sbjct: 401 QYAHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDFVTLRD 460
Query: 370 YARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
YA+ L+W++ + +VV H ++ + + +K
Sbjct: 461 YAQSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 497
>gi|195441209|ref|XP_002068409.1| GK20438 [Drosophila willistoni]
gi|194164494|gb|EDW79395.1| GK20438 [Drosophila willistoni]
Length = 512
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 131/462 (28%), Positives = 221/462 (47%), Gaps = 79/462 (17%)
Query: 19 TARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVA 78
T L KLY P IC A+ R LP +A++++ ++L++D +P + W + + A
Sbjct: 53 TPETLEKLYNYPPICLAVYRDLPEIARQFIIRILFVDQPVPQAVVSSWGAQRCAKEQQEA 112
Query: 79 IDRLVQLRLF--SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGIT----ARLP 132
L L ++ + + L+ TF+ ++++ L+ GG +P P T ++
Sbjct: 113 TSCLTSLNVWRVTAIPGGLAAWELSPTFKKSVRQILLGGG----KPWPMTNTLEKDSKPR 168
Query: 133 TLEDLEAYAIGQWECFLLQLISS-------AQAERPTN----FSSSMMKVFQRG------ 175
+ L++YA+ +W C L ++ + A+A P +++MK +R
Sbjct: 169 DIAFLDSYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAVRILLHANLMKRDERDGITITR 228
Query: 176 -----LLIQSILRSLKFL----------------CQGILEAYNLNTL---------SEIQ 205
LL+ + + F+ C +L + +TL S
Sbjct: 229 QGFQFLLLDTRAQVWHFMMQYLDTCEERGISLPECLSMLFQLSFSTLGRDYSSEGMSHQM 288
Query: 206 RSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------------MSLTDSSARKE-- 250
+ ++ + GLV Q+ RKE F PT+LA N++ MS ++ R +
Sbjct: 289 LAFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKESADATTAIVTMSASEEEERMQDR 347
Query: 251 GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQI 310
G++VVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI
Sbjct: 348 GYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQI 407
Query: 311 ISFLQQNAHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVF 364
IS+L+Q AHP V I S +P V DQI+LWE + NR T Y +F S F
Sbjct: 408 ISYLEQYAHPNMKLVESAINSKSCLPPTVVDQIKLWEMERNRFTYTEGVVYNQFLSTTDF 467
Query: 365 EAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
DYA+ L+W++ K +VV H ++ + + +K
Sbjct: 468 VTLRDYAQSIQVLVWQNEKTRTMVVQKNGHDDVKRYWKKYSK 509
>gi|303321033|ref|XP_003070511.1| Transcription factor tfb2 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240110207|gb|EER28366.1| Transcription factor tfb2 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320036051|gb|EFW17991.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Coccidioides posadasii str. Silveira]
Length = 487
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 134/483 (27%), Positives = 217/483 (44%), Gaps = 98/483 (20%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
++ + SL KLY+ P AI R LP LAK +V +LY+ +PA +E WV
Sbjct: 9 LEYLESLPGTVFLKLYQQPSTALAIFRRMLPHLAKCFVMALLYLKDPLPAAELELWVKAG 68
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKE--TTYRLNSTFQSNLQKHLING------GALPREP 122
+ A+ L +L + S + Y + + F S+L++ L G G + P
Sbjct: 69 SKRERDNALSILSRLHILSSTTTSDHVRAYMVTNPFSSSLRQALTGGDKQHSFGVMSSMP 128
Query: 123 MPSGITARLPTLEDLEAYAIGQWECFLLQLISS----AQAERPTNFSSSMMKVFQRGLLI 178
P +T + DL+ YA QWE L ++ + Q E T S + + Q L+
Sbjct: 129 DPHPMT-----VSDLDDYARRQWEGVLGYMVGTNSLGIQRENVT-LSKGVKSLLQACHLV 182
Query: 179 QSILRSLKFLCQGIL--------------------------------------------E 194
+ R ++ +G +
Sbjct: 183 EVRDRRVEITKEGFAFVLQDVNTQVWHILILYVENAEAIGMDSVEVLSFLFLLSSLELGQ 242
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNL---SMSLTD------ 244
+Y+ L+ Q + D D G+V ES F PT+LAT L SM+L+
Sbjct: 243 SYDKKHLTSTQLRTLADLTDFGIVYQHSPASESTRFYPTRLATTLTSDSMALSSPISGNL 302
Query: 245 ----------SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 294
+ A GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G +T+
Sbjct: 303 APAGPNINAATGAPGTGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKLTR 362
Query: 295 ESLYNAFENGITAEQIISFLQQNAHPRV-----------ADRIPS--VPENVCDQIRLWE 341
+S+ A E GITA+QIIS+L +AHP++ +P+ +P V DQIRLW+
Sbjct: 363 QSIRRAVEMGITADQIISYLTTHAHPQMRKVNASKSTSTTAGLPASVLPPTVVDQIRLWQ 422
Query: 342 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 401
+ +R++ TP +++F S FEA C YA + L+W+ K+ V H + FL
Sbjct: 423 LERDRLKATPGFLFKDFASSAEFEAPCRYAEEIGVLVWKSEKRRMFFVTR--HEQVAAFL 480
Query: 402 RGQ 404
R +
Sbjct: 481 RSR 483
>gi|395533817|ref|XP_003768949.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Sarcophilus harrisii]
Length = 1638
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/482 (26%), Positives = 221/482 (45%), Gaps = 82/482 (17%)
Query: 5 KIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTME 64
++ +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P +
Sbjct: 47 QLQCRNLQEFLRGLSPVVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVA 106
Query: 65 EWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALPRE 121
WV + + + L LR++ + + LN F+ NL+ L+ GG A +
Sbjct: 107 LWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGFILNPVFRQNLRVALLGGGKAWSDD 166
Query: 122 PMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA----------------------- 158
G + L+ YA +WE L ++ S A
Sbjct: 167 TSQLGPDKHARDVPSLDKYAEERWEVILHFMVGSPSAAVSQDLAQLLSQAGLMKSSEPGE 226
Query: 159 --------------ERPTNFSSSMMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYNLN 199
+ P M++ Q RG+ + IL L L L + Y++
Sbjct: 227 PPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVE 286
Query: 200 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVET 257
+S+ + ++ + GLV Q+ RK + PT+LA NLS +T + +A + GF+VVET
Sbjct: 287 GMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVTGAGGTAHQPGFIVVET 345
Query: 258 NFRMYAYST----------------------------------SKLHCEILRLFSKIEYQ 283
N+R+YAY+ S+L ++ LFS++ Y+
Sbjct: 346 NYRLYAYTGEVGGIKMRIEIRGGGIGGELNLLWSSIVFSLETESELQIALIALFSEMLYR 405
Query: 284 LPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESD 343
PN++V +T+ES+ A NGITA+QII F++ AHP + + P +P + DQIRLWE +
Sbjct: 406 FPNMVVAQVTRESVQQAIANGITAQQIIHFMKTRAHPVMLKQTPVLPPTITDQIRLWELE 465
Query: 344 LNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRG 403
+R+ + Y +F S+ FE +AR+ L++E++ K +VV H ++ F +
Sbjct: 466 RDRLRFSEGVLYNQFLSQVDFELLLSHARELGVLVFENTAKRLMVVTPAGHSDVKRFWKR 525
Query: 404 QN 405
Q
Sbjct: 526 QK 527
>gi|325089533|gb|EGC42843.1| TFIIH basal transcription factor complex p52 subunit [Ajellomyces
capsulatus H88]
Length = 485
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 131/475 (27%), Positives = 216/475 (45%), Gaps = 84/475 (17%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
M+ + SL +LY+ P AI R LP LAK +V +LY+ +PA +E WV +
Sbjct: 9 MEYLESLPGTVFRRLYQQPSTALAIFRRMLPYLAKCFVMALLYLKDPLPAADLELWVKAE 68
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKETT--YRLNSTFQSNLQKHLINGGALPREPMPSGIT 128
+ A+ L +L + S + Y + F S+L++ L G +PS
Sbjct: 69 SKRERDNALSILGRLHILSNTTTSDNVRAYTVTDPFSSSLRQALTGGDKQQSFGVPSLTD 128
Query: 129 ARLP-TLEDLEAYAIGQWECFLLQLI--SSAQAERPTNFSSSMMKVFQRGLLIQS----- 180
P T+ L+ YA QWE L ++ S+ ++ S + ++ Q L++
Sbjct: 129 DENPMTVAQLDHYARSQWEGVLGYMVGTSALGVQQAVTLSKGVKQLLQACHLVEVRDRRV 188
Query: 181 ---------ILRSLKFLCQGIL------------------------------EAYNLNTL 201
+L+ L IL ++Y L
Sbjct: 189 EITKDGFAFVLQDLNTQVWHILILYVENAEQIGMDSIEVLSFLFVLSSLELGQSYEKKHL 248
Query: 202 SEIQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNLSM----------------SLTD 244
+ Q + D D G+V +E+ F PT+LAT L+ +L
Sbjct: 249 TSTQLKTLADLTDFGIVYQHSPHQEATRFYPTRLATTLTSDSITLSSSISSSLTAPNLVP 308
Query: 245 SSARKE---GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 301
S++ E GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G +T++S+ A
Sbjct: 309 SASSNEPSTGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGKLTRQSVRRAV 368
Query: 302 ENGITAEQIISFLQQNAHPRVAD-----------RIPSV-PENVCDQIRLWESDLNRVEM 349
E GITA+QIIS+L +AHP++ +P+V P V DQIRLW+ + +R++
Sbjct: 369 EMGITADQIISYLTTHAHPQMRKYHATKSGANPVGVPTVLPPTVVDQIRLWQLERDRIKA 428
Query: 350 TPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
TP +++F S FE C YA + L+W+ +K V H + +LR +
Sbjct: 429 TPGFLFKDFVSLAEFEGPCRYAEEIGVLVWKSERKRMFFVTR--HEQVATYLRSK 481
>gi|225555033|gb|EEH03326.1| RNA pol II transcription initiation subunit [Ajellomyces capsulatus
G186AR]
Length = 485
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 132/475 (27%), Positives = 215/475 (45%), Gaps = 84/475 (17%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
M+ + SL +LY+ P AI R LP LAK +V +LY+ +PA +E WV +
Sbjct: 9 MEYLESLPGTVFRRLYQQPSTALAIFRRMLPYLAKCFVMALLYLKDPLPAADLELWVKTE 68
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKETT--YRLNSTFQSNLQKHLINGGALPREPMPSGIT 128
+ A+ L +L + S + Y + F S+L++ L G +PS
Sbjct: 69 SKRERDNALSILSRLHILSNTTTSDNVRAYTVTDPFSSSLRQALTGGDKQQSFGVPSVTD 128
Query: 129 ARLP-TLEDLEAYAIGQWECFLLQLI--SSAQAERPTNFSSSMMKVFQRGLLIQS----- 180
P T+ L+ YA QWE L ++ S+ ++ S + ++ Q L++
Sbjct: 129 DENPMTVAQLDHYARSQWEGVLGYMVGTSALGVQQAATLSKGVKQLLQACHLVEVRDRRV 188
Query: 181 ---------ILRSLKFLCQGIL------------------------------EAYNLNTL 201
+L+ L IL ++Y L
Sbjct: 189 EITKDGFAFVLQDLNTQVWHILILYVENAEQIGMDSIEVLSFLFVLSSLELGQSYEKKHL 248
Query: 202 SEIQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNL-----------SMSLT------ 243
+ Q + D D G+V +E+ F PT+LAT L S SLT
Sbjct: 249 TSTQLKTLADLTDFGIVYQHSPHQEATRFYPTRLATTLTSDSITLGSSISSSLTAPNGVP 308
Query: 244 --DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 301
S+ GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G +T++S+ A
Sbjct: 309 SASSNEPSTGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGKLTRQSVRRAV 368
Query: 302 ENGITAEQIISFLQQNAHPRVAD-----------RIPSV-PENVCDQIRLWESDLNRVEM 349
E GITA+QIIS+L +AHP++ +P+V P V DQIRLW+ + +R++
Sbjct: 369 EMGITADQIISYLTTHAHPQMRKYHATKAGANPVGVPTVLPPTVVDQIRLWQLERDRIKA 428
Query: 350 TPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
TP +++F + FE C YA + L+W+ +K V H + +LR +
Sbjct: 429 TPGFLFKDFVNLAEFEGPCRYAEEIGVLVWKSERKRMFFVTR--HEQVAAYLRSR 481
>gi|240279262|gb|EER42767.1| TFIIH basal transcription factor complex p52 subunit [Ajellomyces
capsulatus H143]
Length = 485
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 131/475 (27%), Positives = 216/475 (45%), Gaps = 84/475 (17%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
M+ + SL +LY+ P AI R LP LAK +V +LY+ +PA +E WV +
Sbjct: 9 MEYLESLPGTVFRRLYQQPSTALAIFRRMLPYLAKCFVMALLYLKDPLPAADLELWVKAE 68
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKETT--YRLNSTFQSNLQKHLINGGALPREPMPSGIT 128
+ A+ L +L + S + Y + F S+L++ L G +PS
Sbjct: 69 SKRERDNALSILGRLHILSNTTTSDNVRAYTVTDPFSSSLRQALTGGDKQQSFGVPSLTD 128
Query: 129 ARLP-TLEDLEAYAIGQWECFLLQLI--SSAQAERPTNFSSSMMKVFQRGLLIQS----- 180
P T+ L+ YA QWE L ++ S+ ++ S + ++ Q L++
Sbjct: 129 DENPMTVAQLDHYARSQWEGVLGYMVGTSALGVQQAVTLSKGVKQLLQACHLVEVRDRRV 188
Query: 181 ---------ILRSLKFLCQGIL------------------------------EAYNLNTL 201
+L+ L IL ++Y L
Sbjct: 189 EITKDGFAFVLQDLNTQVWHILILYVENAEQIGMDSIEVLSFLFVLSSLELGQSYEKKHL 248
Query: 202 SEIQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNLSM----------------SLTD 244
+ Q + D D G+V +E+ F PT+LAT L+ +L
Sbjct: 249 TSTQLKTLADLTDFGIVYQHSPHQEATRFYPTRLATTLTSDSITLSSSISSSLTAPNLVP 308
Query: 245 SSARKE---GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 301
S++ E GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G +T++S+ A
Sbjct: 309 SASSNEPSTGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGKLTRQSVRRAV 368
Query: 302 ENGITAEQIISFLQQNAHPRVAD-----------RIPSV-PENVCDQIRLWESDLNRVEM 349
E GITA+QIIS+L +AHP++ +P+V P V DQIRLW+ + +R++
Sbjct: 369 EMGITADQIISYLTTHAHPQMRKYHATKSGANPVGVPTVLPPTVVDQIRLWQLERDRIKA 428
Query: 350 TPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
TP +++F S FE C YA + L+W+ +K V H + +LR +
Sbjct: 429 TPGFLFKDFVSLAEFEGPCRYAEEIGVLVWKSERKRMFFVTR--HEQVAAYLRSK 481
>gi|396459783|ref|XP_003834504.1| similar to RNA polymerase II transcription factor B subunit 2
[Leptosphaeria maculans JN3]
gi|312211053|emb|CBX91139.1| similar to RNA polymerase II transcription factor B subunit 2
[Leptosphaeria maculans JN3]
Length = 483
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/432 (28%), Positives = 203/432 (46%), Gaps = 80/432 (18%)
Query: 25 KLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
KLYE P A+ R LP LAK V +LY+ ++P ++ W + + A+ L
Sbjct: 23 KLYEQPSTVLAVFRCMLPHLAKSIVMALLYMPTSLPTTDLDAWFKSTARKEKEQALFILD 82
Query: 84 QLRLFSEEKK---KETTYRLNSTFQSNLQKHLINGGA-----LPREPMPSGITARLPTLE 135
L + ++++ K +++ L FQ +L+ L G+ +P SG + ++E
Sbjct: 83 CLHIITQQRNDDGKTSSWALTPGFQRSLRNALEGAGSHCSFGVPATREESG--GKKVSVE 140
Query: 136 DLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSIL------------R 183
L+ Y+ GQWE L L+S A R + S + + + LL++ L
Sbjct: 141 FLDEYSRGQWEGILYYLVSGAAGLRSDSISRAEVGPGTKKLLMEGDLVRVIHGTPRITKD 200
Query: 184 SLKFLCQ--------------------GILEA-----------------YNLNTLSEIQR 206
F+ Q G+ E Y+++TLS+ Q
Sbjct: 201 GFSFVLQETNAQVWSLLIVYLKMVHELGMSETEVLSFLFMLGSLDLGRDYSISTLSDTQL 260
Query: 207 SMIKDFADLGLVKLQQGRKESWFIPTKLATNLS------MSLTDS-------------SA 247
M+ D + +GLV + + F PT+LAT L+ MS + + +
Sbjct: 261 QMLDDLSAMGLV-YRTSKDARTFYPTRLATTLTSDSGSAMSASSNDIAQANQGNAGTLAT 319
Query: 248 RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITA 307
+GF+++ETN+R+YAY+ S + IL LF+K++++ PNL+ G +TKES++ A GIT+
Sbjct: 320 ANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESVHKAVSAGITS 379
Query: 308 EQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAA 367
QIIS+L AHP++ + +P V DQIRLWE + RVE+TP ++F S +
Sbjct: 380 AQIISYLSTYAHPQMQKNVSFIPPTVMDQIRLWEYEGERVEVTPGFLMKDFGSDAEYRDV 439
Query: 368 CDYARDRSGLLW 379
YA L+W
Sbjct: 440 LGYADALGVLVW 451
>gi|345569654|gb|EGX52519.1| hypothetical protein AOL_s00043g13 [Arthrobotrys oligospora ATCC
24927]
Length = 452
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 128/439 (29%), Positives = 212/439 (48%), Gaps = 76/439 (17%)
Query: 25 KLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
+LY+ P A+ R LP LAK +V ML+ +P ++E +V PD + A +L
Sbjct: 22 RLYQQPATALAVFRRMLPNLAKTFVMAMLFNPDPVPVSSLEAFVRPDQNRLKEEAFGKLR 81
Query: 84 QLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITAR-LPTLEDLEAYAI 142
QL + +E ++ T+ L++TF+ L+K L GG+ +P + + L+ YA
Sbjct: 82 QLYIVTE---RQGTFALDATFKVELRKALTGGGSPGSFGLPCDTEDKNRVDISFLDRYAA 138
Query: 143 GQWECFLLQLIS--SAQAERPTNFSSSMMKVFQRGLLIQ------SILRSL--KFLCQ-- 190
QWE L ++ + ++RP S ++++ G L++ +++ L FL Q
Sbjct: 139 EQWESILHFMVGNETQSSQRP---SEGVVRLLLHGKLMEQNRASGTVITQLGFSFLLQEV 195
Query: 191 --------------------------------GILE---AYNLNTLSEIQRSMIKDFADL 215
G LE Y++ +L+ Q+ M++D D
Sbjct: 196 NSQVWTLLLLYLDMAEQLRMDPVDILHFLFLLGSLELGQDYDMKSLTPTQKGMLEDLRDY 255
Query: 216 GLVKLQQGRKESWFIPTKLATNLS---MSLTDSSAR---------KEGFVVVETNFRMYA 263
G+V Q+ F PT+LAT L+ SL +A + GF+++ETN+
Sbjct: 256 GIV-YQRKSSSRRFYPTRLATGLTSEIRSLRSPAATLANATPGNDENGFLIIETNYH--- 311
Query: 264 YSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA 323
S L +L LF+++ + PNL+ IT+ES+ A GITAEQII ++ NAHP++
Sbjct: 312 ---SPLQIAVLNLFARLISRFPNLVTARITRESIRQAIGKGITAEQIIDYMTANAHPQLR 368
Query: 324 DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSK 383
P +P V DQIRLW+ + R+++T + ++EF + F A C YA D L+W D
Sbjct: 369 KNSPVLPPTVVDQIRLWQIEGERMKVTSGYLFKEFATNAEFNAVCKYADDIGVLVWIDKN 428
Query: 384 KMRLVVNAEIHMHMREFLR 402
K L V+ H + +++R
Sbjct: 429 KGMLFVSK--HEQIADYIR 445
>gi|294660113|ref|XP_002777731.1| DEHA2G23254p [Debaryomyces hansenii CBS767]
gi|218511847|sp|Q6BGW8.2|TFB2_DEBHA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|199434471|emb|CAR66042.1| DEHA2G23254p [Debaryomyces hansenii CBS767]
Length = 515
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 130/492 (26%), Positives = 215/492 (43%), Gaps = 138/492 (28%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
++LYE P C +I R LPP+AK Y+ ML+ + + K +++W P T K D L
Sbjct: 24 SRLYEAPATCLSIYRLLPPIAKFYIMTMLFYETPVALKDLDKWCKP---TSRKFQFDSLK 80
Query: 84 QLRLFS--EEKKKETTYRLNSTFQSNLQKHLING------GALPREPMPSGITARLPTLE 135
+LR EE + RL+ TF+ N + L G L P ++ +
Sbjct: 81 RLRALHLIEEDSSGSHIRLHPTFRQNFRDCLTGSQARNAFGNLSTTPDEQSVSIKF---- 136
Query: 136 DLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRS----------L 185
L+++A+ +WE L ++ + + P+N S++ + + G L++ +
Sbjct: 137 -LDSFALQKWESILHFMVGTELSVTPSN---SVLSLLKSGGLMEGTNKGGNRLNITNSGF 192
Query: 186 KFLCQ----------------------------------GILE---AYNLNTLSEIQRSM 208
+FL Q G LE Y +++LSE Q SM
Sbjct: 193 QFLLQDINAQIWTLLLQYLNLTQDLNMDPVDVLNFIFILGSLELGKGYTVSSLSETQISM 252
Query: 209 IKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK------------------- 249
+ D D GL+ Q+ F PT+LAT L+ +DS+A K
Sbjct: 253 LADLRDYGLI-YQRSENSERFYPTRLATTLT---SDSAALKSPSMAMEQALESTTETEEQ 308
Query: 250 --------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 301
+G +++ETNF++YAY+ S L IL LF ++ + N++ G IT+ES+ NA
Sbjct: 309 QNLASNSNQGTIILETNFKIYAYTNSPLEIAILNLFVHLKTRFSNMVCGQITRESIRNAL 368
Query: 302 ENGITAEQIISFLQQNAHPRVA-------------------------------------- 323
NGITA+QII FL+ +AH ++
Sbjct: 369 YNGITADQIIKFLETHAHSQMKILAKERLDKKIEFDTSNNINTAGGAPQSQMMTNENGTT 428
Query: 324 ---DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE 380
++ +P V DQI+LW+ +L+R++ + +++F S+ FEA +YA + LLW
Sbjct: 429 VAQHKLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFASQQEFEALSNYASEIGVLLWS 488
Query: 381 DSKKMRLVVNAE 392
+ KM+ V +
Sbjct: 489 NKSKMKFFVTKD 500
>gi|190347675|gb|EDK39997.2| hypothetical protein PGUG_04095 [Meyerozyma guilliermondii ATCC
6260]
Length = 498
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 133/474 (28%), Positives = 217/474 (45%), Gaps = 102/474 (21%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
++LYE P C +I R L P+AK ++ M++ + + +++W P + A+ RL
Sbjct: 23 SQLYEAPATCLSIFRLLTPIAKFFIMSMIFNERPQSVRDLDKWCRPQSKSLQYDALKRLK 82
Query: 84 QLRLFSEEKKKETTYRLNSTFQSNLQKHLI-NGGALPREPMPSGITARLPTLEDLEAYAI 142
L L EE RL+ TF+ N + L N A + + T+ L+++A
Sbjct: 83 SLHLV-EEDAGGNFLRLHMTFRKNFRDCLTGNQEATAFGNLCTEDDGHKVTVAFLDSFAS 141
Query: 143 GQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ---SILRSLK-------FLCQ-- 190
+WE L ++ + E P+ S S++ + + G L++ + R+LK FL Q
Sbjct: 142 QKWETILHYMVGT---ELPSKPSPSVLSLLKSGGLMEGPGTDARNLKITNSGFQFLLQDM 198
Query: 191 --------------------------------GILE---AYNLNTLSEIQRSMIKDFADL 215
G LE +Y L+ LS+ Q SM+ D D
Sbjct: 199 NAQIWTLLLQYLNLTQDLNMDPVDVLNFLFVLGSLELGKSYYLSGLSDTQVSMLADLRDY 258
Query: 216 GLVKLQQGRKESWFIPTKLATNL----------SMSLTDS--------SARKEGFVVVET 257
GLV Q + F PT+LAT L SM+L + S +G +++ET
Sbjct: 259 GLV-YQYSDQSDRFYPTRLATTLTSESASLKTPSMALDQAVDTSNGLDSGPGQGSIILET 317
Query: 258 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 317
NF++YAY+ S L IL LF + + N++ G IT+ES+ NA NGIT++QII+FL+ +
Sbjct: 318 NFKLYAYTNSPLEIAILNLFVNLRTRFSNMVSGQITRESIRNALYNGITSDQIINFLETH 377
Query: 318 AHPRV-------------------------------ADRIPSVPENVCDQIRLWESDLNR 346
AHP++ ++ +P V DQI+LW+ +L+R
Sbjct: 378 AHPQMRALAKERLDKKVEFDASNNINTAGGGQNSSAQHKLEILPPTVVDQIKLWQLELDR 437
Query: 347 VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 400
++ + ++EF S+ F+ C+YA D L+W D KMR V + + +F
Sbjct: 438 IQAFEGYLFKEFASQQEFDVLCNYASDVGVLIWSDRTKMRFFVTKDGISQVADF 491
>gi|146414792|ref|XP_001483366.1| hypothetical protein PGUG_04095 [Meyerozyma guilliermondii ATCC
6260]
Length = 498
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 133/474 (28%), Positives = 218/474 (45%), Gaps = 102/474 (21%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
++LYE P C +I R L P+AK ++ M++ + + +++W P + A+ RL
Sbjct: 23 SQLYEAPATCLSIFRLLTPIAKFFIMLMIFNERPQSVRDLDKWCRPQSKSLQYDALKRLK 82
Query: 84 QLRLFSEEKKKETTYRLNSTFQSNLQKHLI-NGGALPREPMPSGITARLPTLEDLEAYAI 142
L L EE RL+ TF+ N + L N A + + T+ L+++A+
Sbjct: 83 SLHLV-EEDAGGNFLRLHMTFRKNFRDCLTGNQEATAFGNLCTEDDGHKVTVAFLDSFAL 141
Query: 143 GQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ---SILRSLK-------FLCQ-- 190
+WE L ++ + E P+ S S++ + + G L++ + R+LK FL Q
Sbjct: 142 QKWETILHYMVGT---ELPSKPSPSVLSLLKLGGLMEGPGTDARNLKITNSGFQFLLQDM 198
Query: 191 --------------------------------GILE---AYNLNTLSEIQRSMIKDFADL 215
G LE +Y L+ LS+ Q SM+ D D
Sbjct: 199 NAQIWTLLLQYLNLTQDLNMDPVDVLNFLFVLGSLELGKSYYLSGLSDTQVSMLADLRDY 258
Query: 216 GLVKLQQGRKESWFIPTKLATNL----------SMSLTDS--------SARKEGFVVVET 257
GLV Q + F PT+LAT L SM+L + S +G +++ET
Sbjct: 259 GLV-YQYSDQSDRFYPTRLATTLTSESASLKTPSMALDQAVDTSNGLDSGPGQGSIILET 317
Query: 258 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 317
NF++YAY+ S L IL LF + + N++ G IT+ES+ NA NGIT++QII+FL+ +
Sbjct: 318 NFKLYAYTNSPLEIAILNLFVNLRTRFSNMVSGQITRESIRNALYNGITSDQIINFLETH 377
Query: 318 AHPRV-------------------------------ADRIPSVPENVCDQIRLWESDLNR 346
AHP++ ++ +P V DQI+LW+ +L+R
Sbjct: 378 AHPQMRALAKERLDKKVEFDASNNINTAGGGQNSSAQHKLEILPPTVVDQIKLWQLELDR 437
Query: 347 VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 400
++ + ++EF S+ F+ C+YA D L+W D KMR V + + +F
Sbjct: 438 IQAFEGYLFKEFASQQEFDVLCNYASDVGVLIWSDRTKMRFFVTKDGISQVADF 491
>gi|193633122|ref|XP_001945987.1| PREDICTED: general transcription factor IIH subunit 4-like
[Acyrthosiphon pisum]
Length = 471
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 118/432 (27%), Positives = 207/432 (47%), Gaps = 55/432 (12%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKH---KVAID 80
++LY +P C + R LP + +++ ++L+I+ +P + WV P +++ + +
Sbjct: 42 DRLYSHPPTCLTVFRVLPDITQQFTLRILFIEQPVPQSVLSSWV-PANYSRELDESIEVA 100
Query: 81 RLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGG--ALPREPMPSGITARLPTLEDLE 138
+ + + + LNSTF+ L+ L+ GG +P M + AR ++ L+
Sbjct: 101 TNLHIWKLTSVSGGLKGWILNSTFKKKLKVALMGGGRSTVPNSDMTADPKAR--DIDFLD 158
Query: 139 AYAIGQWECFLLQLISSAQA---------------------ERPTNFSSS---------- 167
+YA +WEC L ++ S + P S+
Sbjct: 159 SYAYERWECILHYMVGSKHEGISSDAVRVLLNAGLMVRDTDDSPVITSTGFQFLLLDMAT 218
Query: 168 ---------MMKVFQRGLLIQSILRSLKFLCQGILE-AYNLNTLSEIQRSMIKDFADLGL 217
M V RGL + L L + G L Y + +SE ++ ++ + GL
Sbjct: 219 QVWYFMLRYMETVESRGLDLAQCLTFLFQIHLGTLGWDYITDEMSENLQAFLQHLREFGL 278
Query: 218 VKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFVVVETNFRMYAYSTSKLHCEIL 274
V Q+ RK F PT+L + + +S R KE ++VVETNFR+YA + S L ++
Sbjct: 279 V-YQRKRKAGRFYPTRLVIEMGQGNSRTSERMKNKERYIVVETNFRIYAMTDSDLKVALV 337
Query: 275 RLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVC 334
LF+ + Y+ PN+ G +T++S+ A +GITA QI+ FL + HP++ + +P+ V
Sbjct: 338 ALFTHMLYRFPNMSAGILTRDSVRTALRSGITAAQIVRFLTVHTHPQMQE--CGMPQTVI 395
Query: 335 DQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIH 394
DQI LWE++ NR+ T Y + + +E +YA D L+W D ++ +VV+ + H
Sbjct: 396 DQIYLWENERNRLTYTDGVLYSNINTPNDYETIKNYAADIGALVWCDERRRNIVVSTDGH 455
Query: 395 MHMREFLRGQNK 406
+R+F + Q K
Sbjct: 456 DDVRKFWKKQPK 467
>gi|169610043|ref|XP_001798440.1| hypothetical protein SNOG_08115 [Phaeosphaeria nodorum SN15]
gi|160701967|gb|EAT84391.2| hypothetical protein SNOG_08115 [Phaeosphaeria nodorum SN15]
Length = 426
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 193/410 (47%), Gaps = 70/410 (17%)
Query: 51 MLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNL 108
MLY+ + PA +E W P ++ A+D L +L + E K +Y L FQ +L
Sbjct: 3 MLYMPSSFPAADLEAWFKPSARSERVQALDILERLHILGSKREDDKSLSYSLIPGFQRSL 62
Query: 109 QKHLINGGALPRE-PMPSGITARLP---TLEDLEAYAIGQWECFLLQLISSAQAERPT-- 162
+H I G R +P+ R ++E L+A+A QWE L ++S A +P
Sbjct: 63 -RHAIEGSGTHRTFGVPASKAERGEKRLSIEFLDAHAREQWEGILFFMVSGAAGFQPGSV 121
Query: 163 --NFSSSMMKVFQRGLLIQSIL-------RSLKFLCQ----------------------- 190
+ K+ G L++++ F+ Q
Sbjct: 122 KMDVGPGTKKLLHAGDLVRTVHGTPRITKEGFSFVLQETNAQVWNLLIVYLKMVDDLGMS 181
Query: 191 -----------GILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLAT 236
G LE Y+ +TLS Q M+ D + +G+V + + F PT+LAT
Sbjct: 182 ETEVLSFLFMLGSLELGQDYSTSTLSPSQLHMLDDLSAMGIV-YRSSKDSPTFYPTRLAT 240
Query: 237 NLSMSLT-------------DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQ 283
L+ DS A+ +GF++VETN+R+YAY+ S + IL LF+K++++
Sbjct: 241 TLTSDSGALPGSDVGTTEKPDSKAQNKGFIIVETNYRLYAYTNSLIQIAILSLFTKLQHR 300
Query: 284 LPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESD 343
PNL+ G +TKES++ A + GIT+ QIIS+L AHP++ P +P V DQIRLWE +
Sbjct: 301 FPNLVSGKLTKESVHRAVQAGITSAQIISYLTTYAHPQMQKSNPPLPPTVMDQIRLWEYE 360
Query: 344 LNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAE 392
RVE+T + EF S + YA+ L+W+ D+ + V + E
Sbjct: 361 GERVEVTTGYLMREFGSESEYRDVMGYAQALGVLVWKNDANRCFFVSHVE 410
>gi|448100135|ref|XP_004199281.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
gi|359380703|emb|CCE82944.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
Length = 509
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 136/489 (27%), Positives = 216/489 (44%), Gaps = 119/489 (24%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
++LYE P C +I R LPPLAK Y+ ML+ + I K M +W P A+ RL
Sbjct: 24 SRLYEAPATCLSIYRLLPPLAKFYIMSMLFYEHPIALKDMSKWCNPTAKKIQFEALKRLR 83
Query: 84 QLRLFSEEKKKETTYRLNSTFQSNLQKHLING------GALPREPMPSGITARLPTLEDL 137
L L EE K + +L+ TF+ N + L G L P + I + L
Sbjct: 84 SLHLI-EEHNKGSHLKLHQTFRKNFRDCLTGSQTSNAFGNLCTSPDKNHIDVKF-----L 137
Query: 138 EAYAIGQWECFL----------------LQLISSAQAERPTNFSSSMMKVFQRG------ 175
+ +A +WE L L L+ S S+S +K+ +G
Sbjct: 138 DMFASQKWESILHFMVGTELSVAPSKSVLSLLKSGGLMEGPGTSASNLKITNKGFQFLLQ 197
Query: 176 --------LLIQSI----------LRSLKFL----CQGILEAYNLNTLSEIQRSMIKDFA 213
LL+Q + + L F+ C + ++Y +++LSE Q SM+ D
Sbjct: 198 DVNVQIWTLLLQYLSLTQDLNMDPVDVLNFIFVLGCLELGKSYTVSSLSETQISMLADLK 257
Query: 214 DLGLVKLQQGRKESWFIPTKLATNL----------SMSLT------DSSARKE------- 250
D GL+ KE F PT+LAT L SM+L +S A +E
Sbjct: 258 DYGLIYQNHNDKER-FYPTRLATTLTSEAAALRTPSMALNQVVDTANSEATEEQMFSNTG 316
Query: 251 GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQI 310
G +++ETNF++YAY+ S L IL LF ++ + PN++ G IT+ES+ A NGITA+QI
Sbjct: 317 GSIILETNFKIYAYTNSPLEIAILNLFVHLKTRFPNMVTGQITRESIRKALFNGITADQI 376
Query: 311 ISFLQQNAHPRVAD---------------------------------------RIPSVPE 331
I FL+ +AH ++ ++ +P
Sbjct: 377 IKFLESHAHSQMKQMAKENLDKKIEFDANNNINTATDSQQLSVGEFGSASSYHKLEILPP 436
Query: 332 NVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNA 391
V DQI+LW+ +L+R++ + +++F S+ ++A +YA + LLW D + + V
Sbjct: 437 TVVDQIKLWQLELDRIQTFEGYLFKDFSSQQEYDALRNYASELGVLLWSDKNRKKFFVTK 496
Query: 392 EIHMHMREF 400
+ + +F
Sbjct: 497 DGMSQVADF 505
>gi|448103836|ref|XP_004200137.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
gi|359381559|emb|CCE82018.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
Length = 512
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 136/489 (27%), Positives = 215/489 (43%), Gaps = 119/489 (24%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
++LYE P C +I R LPPLAK Y+ ML+ + I K M +W P A+ RL
Sbjct: 24 SRLYEAPATCLSIYRLLPPLAKFYIMSMLFYEHPIALKDMSKWCKPTAKKIQFEALKRLR 83
Query: 84 QLRLFSEEKKKETTYRLNSTFQSNLQKHLING------GALPREPMPSGITARLPTLEDL 137
L L EE K + +L+ TF+ N + L G L P + I + L
Sbjct: 84 SLHLI-EEHNKGSHLKLHQTFRKNFRDCLTGSQTSNAFGNLCTSPDKNHIDVKF-----L 137
Query: 138 EAYAIGQWECFL----------------LQLISSAQAERPTNFSSSMMKVFQRG------ 175
+ +A +WE L L L+ S S+S +K+ +G
Sbjct: 138 DMFASQKWESILHFMVGTELSVAPSKSVLSLLKSGGLMEGPGTSASNLKITNKGFQFLLQ 197
Query: 176 --------LLIQSI----------LRSLKFL----CQGILEAYNLNTLSEIQRSMIKDFA 213
LL+Q + + L F+ C + ++Y +++LSE Q SM+ D
Sbjct: 198 DVNVQIWTLLLQYLSLTQDLNMDPVDVLNFIFVLGCLELGKSYTVSSLSETQISMLADLK 257
Query: 214 DLGLVKLQQGRKESWFIPTKLATNL----------SMSLT------DSSARKE------- 250
D GL+ KE F PT+LAT L SM+L +S A +E
Sbjct: 258 DYGLIYQNHNDKER-FYPTRLATTLTSEAAALRTPSMALNQVVDTANSEATEEQMFSNTG 316
Query: 251 GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQI 310
G +++ETNF++YAY+ S L IL LF ++ + PN++ G IT+ES+ A NGITA+QI
Sbjct: 317 GSIILETNFKIYAYTNSPLEIAILNLFVHLKTRFPNMVTGQITRESIRKALFNGITADQI 376
Query: 311 ISFLQQNAHPRVAD---------------------------------------RIPSVPE 331
I FL+ +AH ++ ++ +P
Sbjct: 377 IKFLESHAHSQMKQMAKENLDKKIEFDANNNINTATDNQQLSVGEFGSANSYHKLEVLPP 436
Query: 332 NVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNA 391
V DQI+LW+ +L+R++ + +++F S+ ++A YA + LLW D + + V
Sbjct: 437 TVVDQIKLWQLELDRIQTFEGYLFKDFSSQQEYDALRSYASELGVLLWSDKNRKKFFVTK 496
Query: 392 EIHMHMREF 400
+ + +F
Sbjct: 497 DGMSQVADF 505
>gi|347830304|emb|CCD46001.1| similar to RNA polymerase II transcription factor B subunit 2
[Botryotinia fuckeliana]
Length = 471
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 124/458 (27%), Positives = 214/458 (46%), Gaps = 75/458 (16%)
Query: 18 LTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHK 76
L +LY+ P AI R LP LAK +V +LY+ +P +++WV +
Sbjct: 15 LPGTTFRRLYQQPSTSLAIFRRMLPHLAKTFVMALLYMPKPLPLIALDQWVQSKSKKQKD 74
Query: 77 VAIDRLVQLRLF---SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGI-TARLP 132
A+ L +L + + ++ T L F ++L+ L GG +PS A
Sbjct: 75 QALSLLSRLHIVDITALSREDPQTVALTKNFGASLRLALTGGGNHQSFGVPSSDHIAPHV 134
Query: 133 TLEDLEAYAIGQWECFLLQLI------SSAQAERPTNFSSSMM---KVFQRGLLIQSILR 183
++ L+ +A QWE L ++ S P N +++ K+ RG I
Sbjct: 135 DIDFLDTHARMQWEGILHYMVNTVTSGSGKDGNGPANSVKALLDAGKLVTRGRGIGITQA 194
Query: 184 SLKFLCQ----------------------------------GILE---AYNLNTLSEIQR 206
FL Q G LE AY+ TL+E Q+
Sbjct: 195 GFSFLLQEANAQVWTLLLLWIENAESMGMDSVDVLSFLFMLGSLELGRAYSTKTLTEAQK 254
Query: 207 SMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM-------------SLTDSSARKEGFV 253
M+ + DLGL+ L +F PT+LAT L+ + + S+A ++GF+
Sbjct: 255 GMLANLIDLGLIYLPPSAPTQFF-PTRLATTLTSDASALRTVAAGFDAASKSAASQKGFI 313
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
++ETN+R+YAY+ S L +L LF+K+ + PN++ G ++++S+ A +GIT++QII++
Sbjct: 314 IIETNYRLYAYTNSPLQIAVLSLFTKLNTRYPNMVSGRVSRDSIRTAIAHGITSDQIITY 373
Query: 314 LQQNAHPRV------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAA 367
L +AHP++ + P +P V DQIRLW+ + R++ P ++F ++ +E
Sbjct: 374 LSTHAHPQLVKASSASHGGPVLPPTVVDQIRLWQLENERMKAVPGFLMKDFETQKEYEGC 433
Query: 368 CDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQ 404
YA + L+W+ D+K+M V E +R++ + +
Sbjct: 434 AKYAEEVGVLVWKSDAKRMFFVTRVE---QLRDYFKAK 468
>gi|366997767|ref|XP_003683620.1| hypothetical protein TPHA_0A01010 [Tetrapisispora phaffii CBS 4417]
gi|357521915|emb|CCE61186.1| hypothetical protein TPHA_0A01010 [Tetrapisispora phaffii CBS 4417]
Length = 504
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 134/497 (26%), Positives = 227/497 (45%), Gaps = 110/497 (22%)
Query: 9 KNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVL 68
K+ D + L + +KLYE+P C +I R LP +AK ++ M++ D I + ++ WV
Sbjct: 8 KSVNDYLEELPQQVQSKLYESPAACLSIYRLLPHMAKFFIMSMVFNDNEISIRDLDRWVN 67
Query: 69 PDGFTKHKVAIDRLVQLRLFSEEKKKETTY-RLNSTFQSNLQKHLINGGALPREPMPSGI 127
+G + + AI + L + K++ + + LNSTF+++ ++ + GG + I
Sbjct: 68 SNGKLQFQDAIKSMKSLHILIPGKEQGSMFVNLNSTFRTSF-RNALTGGEVNNSF--GNI 124
Query: 128 TARLPTLED---LEAYAIGQWECFLLQLISSAQAERPTNF---------------SSSMM 169
++ L D L YA +WE L ++ + + P++ SS
Sbjct: 125 IDKIDDLVDSSVLLEYAKDKWETILHFMVGTPLIKMPSDNVLNLLKHSKLMEELESSGEF 184
Query: 170 KVFQRGL--LIQSI--------LRSLKF---------------LCQGILE---AYNLNTL 201
K+ G L+Q + L+ LK G LE AY++ L
Sbjct: 185 KITNDGFQFLLQDVNSQIWTLLLQYLKIAEALHMNPVDILNFIFMLGSLEFGKAYSVEGL 244
Query: 202 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE----------- 250
S+ Q+ M+KD D GL+ Q+ + F PT LAT L+ +DSS +
Sbjct: 245 SDTQKKMLKDMRDYGLI-FQKTSNATVFYPTTLATQLT---SDSSTVRSASGAIDSLLSQ 300
Query: 251 ---------------------------GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQ 283
G +VVETNF++Y+YS S L IL LF + +
Sbjct: 301 TKEANNNDSQNLGTDTDDLVGNQSVEVGALVVETNFKLYSYSNSPLQIAILSLFVHLRTR 360
Query: 284 LPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADR 325
N++ G IT+ES+ NA NG+TA+QII++LQ +AHP++ D+
Sbjct: 361 FSNMVTGQITRESIRNALANGVTADQIIAYLQSHAHPQMRRLAETTLKKKLELDPNTKDQ 420
Query: 326 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 385
+ +P V DQI+LW+ +L+R+ Y +F + + +YA+D LLW++ +K
Sbjct: 421 LQILPPTVVDQIKLWQLELDRILSYDGSLYSDFDNNQEYNMLYNYAKDIGVLLWKNDRKR 480
Query: 386 RLVVNAEIHMHMREFLR 402
+ V+ E + + +F +
Sbjct: 481 KFFVSKEGNSQVLDFAK 497
>gi|431907067|gb|ELK11185.1| General transcription factor IIH subunit 4 [Pteropus alecto]
Length = 447
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/450 (27%), Positives = 211/450 (46%), Gaps = 64/450 (14%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML++D +P
Sbjct: 12 RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLDQPLPQAA 71
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 72 VALWVKKEFSKAQEESTGLLSSLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 131
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA--------------------- 158
+ G + L+ YA +WE L ++ S A
Sbjct: 132 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEP 191
Query: 159 ----------------ERPTNFSSSMMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYN 197
+ P M++ Q RG+ + IL L L L + Y+
Sbjct: 192 GEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYS 251
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVV 255
+ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + +A + GF+VV
Sbjct: 252 VEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVV 310
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+Q
Sbjct: 311 ETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQ------ 364
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+
Sbjct: 365 ----------TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELG 414
Query: 376 GLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
L++E+S K +VV H ++ F + Q
Sbjct: 415 VLVFENSAKRLMVVTPAGHSDVKRFWKRQK 444
>gi|345492819|ref|XP_001602702.2| PREDICTED: general transcription factor IIH subunit 4-like [Nasonia
vitripennis]
Length = 428
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/421 (27%), Positives = 209/421 (49%), Gaps = 50/421 (11%)
Query: 35 AILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEK-- 92
++ R LP +A+ YV ++L+++ +P + W H + + +L ++ E
Sbjct: 6 SVYRELPEIARHYVMRLLFVEQPVPQAVIASWCSKLHVENHLNVVQVMNELNIWKEAAIP 65
Query: 93 KKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQL 152
+ LN+TF+ NL+ L+ GGA I ++ + L++YA+ +WEC L +
Sbjct: 66 GGLPGWILNATFRKNLKIVLLGGGAPWTMSKQLEIDSKPRDIAFLDSYALERWECVLHYM 125
Query: 153 ISSAQAERPTN------FSSSMMK---------VFQRG---LLIQS-------------- 180
+ S Q E + + +MK + Q G LL+ +
Sbjct: 126 VGSQQQEGISADAVRILLHAGLMKRDEEDGSPVITQAGFQFLLLDTSAQVWYFILQYLDT 185
Query: 181 -------ILRSLKFLCQ----GILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWF 229
++ L FL Q + + Y+ +S+ ++ + GLV Q+ RK F
Sbjct: 186 VEARGLDLVECLTFLFQLNFSTLGKDYSTQGMSDGLLMFLQHLREFGLV-YQRKRKAGRF 244
Query: 230 IPTKLATNLSMSLTDSSAR---KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPN 286
PT+LA N++ +R KE FV+VETN+R+YAY+ S L ++ LF ++ Y+ PN
Sbjct: 245 YPTRLALNIATGQDKPISRDLEKERFVIVETNYRVYAYTNSNLQVALIGLFCELLYRFPN 304
Query: 287 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVAD-RIPSVPENVCDQIRLWESDLN 345
L+V +T++S+ A ++GITA QI+ +L Q+AH ++ D P++P + DQI+LWE++ N
Sbjct: 305 LVVAILTRDSVRAALKSGITAVQIVGYLNQHAHNKMIDPGPPTLPPTIVDQIKLWENERN 364
Query: 346 RVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
R + Y +F S+ FE D+A ++W+ +K +VV H +++F + +
Sbjct: 365 RFIFSEGVLYSQFHSQIDFEVLRDHAVSLGVMIWQSDRKRTMVVTKTGHDDVKKFWKRYS 424
Query: 406 K 406
K
Sbjct: 425 K 425
>gi|45187599|ref|NP_983822.1| ADL274Wp [Ashbya gossypii ATCC 10895]
gi|62901343|sp|Q75B51.1|TFB2_ASHGO RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|44982337|gb|AAS51646.1| ADL274Wp [Ashbya gossypii ATCC 10895]
gi|374107034|gb|AEY95942.1| FADL274Wp [Ashbya gossypii FDAG1]
Length = 514
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 136/488 (27%), Positives = 219/488 (44%), Gaps = 119/488 (24%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
++LY++P C AI R L P+AK ++ M++ D + + ++ WV PD + AI +
Sbjct: 32 SRLYQSPATCLAIYRLLSPMAKFFIMSMIFQDEEVSLRDLDRWVKPDAKFQLHDAIKSMK 91
Query: 84 QLRLFSEEKKKE-TTYRLNSTFQSNLQKHLING-------GALPREPMPSGITARLPTLE 135
L L +E + + +LNS F+ + + L G + E P T+
Sbjct: 92 LLHLITEGRSGQPLMVQLNSIFKESFKNALTGGEVKNSFGNVVEEENDPV-------TMA 144
Query: 136 DLEAYAIGQWECFLLQLISSAQAERP---------------TNFSSSMMKVFQRG----- 175
L++YA +WE L ++ + + P + SS +K+ G
Sbjct: 145 MLDSYAADKWETILHFMVGTPLTKSPGKNVLSLLRHSKLMEVDESSKELKITNEGFQFLL 204
Query: 176 ---------LLIQSILRSLKFLCQ-----------GILE---AYNLNTLSEIQRSMIKDF 212
LL+Q + + F G LE AY++ LSE Q++M++D
Sbjct: 205 QDANAQIWTLLLQYLTMAETFQMDPVDVLNLIFMIGALELGKAYSVVGLSETQKTMLQDL 264
Query: 213 ADLGLVKLQQGRKESWFIPTKLATNLS---MSLTDSSA--------RKEGF--------- 252
D GLV Q+ S F PT+LAT L+ +S+ +S R EG
Sbjct: 265 RDYGLV-FQKQSNLSKFYPTRLATMLTSDVVSIRSASGAVNSVLRQRAEGVDGKVLNGTA 323
Query: 253 -----------------VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 295
++VETNF++Y+YS S L IL LF ++ + N++ G IT+E
Sbjct: 324 LGDDDLQAGGEGALDGALIVETNFKLYSYSNSPLQIAILSLFIHLKTRFQNMVTGQITRE 383
Query: 296 SLYNAFENGITAEQIISFLQQNAHP---RVA---------------DRIPSVPENVCDQI 337
S+ A NGITA+QII++++ +AHP R+A D + +P V DQI
Sbjct: 384 SIRRALHNGITADQIIAYMETHAHPQMRRLAGDNLEKKLELDPNCRDTLQVLPPTVVDQI 443
Query: 338 RLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAE----- 392
+LW+ +L+R+ + + +F + ++ YARD LLW D KK V+ E
Sbjct: 444 KLWQLELDRIISYDGYLFRDFDNLQEYQVLAQYARDIGVLLWSDDKKKMFFVSKEGNAQV 503
Query: 393 IHMHMREF 400
I H R+F
Sbjct: 504 IDFHKRKF 511
>gi|145351329|ref|XP_001420034.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580267|gb|ABO98327.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 495
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 8/208 (3%)
Query: 199 NTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA-------RKEG 251
LS+ ++ ++ D LGL+ + +K+ +++PT LA+ LS T EG
Sbjct: 275 GVLSDTEQDVVLDLTHLGLLYTFEVKKKFYYVPTLLASGLSGGFTGDDGDTKAAAAAAEG 334
Query: 252 FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQII 311
++VETN+R+YAY++S + EILRLF++ +Y+LPNL VG +T+ES+ NA G+ AEQI+
Sbjct: 335 HIIVETNYRVYAYTSSAVEMEILRLFTRADYRLPNLYVGMLTRESVQNALRAGVDAEQIV 394
Query: 312 SFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAA-CDY 370
+++ +AH +V + PSVP VCDQIRLW D+ R+E Y +FP F A
Sbjct: 395 GYIRAHAHKQVRRKKPSVPSTVCDQIRLWARDMERMEAEECVLYCDFPQAGTFYGAVVSE 454
Query: 371 ARDRSGLLWEDSKKMRLVVNAEIHMHMR 398
A R LLW D RL V A H M+
Sbjct: 455 AEKRGALLWRDDASRRLTVRASAHDEMK 482
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 22/186 (11%)
Query: 11 FMDMVASLTARDLNKLY-ENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLP 69
F+ + +L R+L+ LY +P+ A+LR+ +AK+ + ++ Y+D A+ +W
Sbjct: 19 FVAFLCALAPRELDALYASSPWSALAVLRACDSIAKQIILRLAYVDDGADARECAKWC-G 77
Query: 70 DGFTKHKV---AIDRLVQLRLFSEEKKKETTYRL-NSTFQSNLQKHLING--------GA 117
DG + + A+ RL +LR+ + + E + N F +NL++ L G GA
Sbjct: 78 DGASDARALERAMARLARLRVTTALGEGEDARVVANEAFANNLRRALERGFVNLDDGDGA 137
Query: 118 LPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL 177
RE +G+ A++P L AYA +WE LL L ++ A FS KV R L
Sbjct: 138 DARED--AGVAAKVPDRATLNAYAKAKWEDLLLTLTGASNA-----FSRPGAKVKGR-LD 189
Query: 178 IQSILR 183
Q++ R
Sbjct: 190 AQALFR 195
>gi|308460924|ref|XP_003092760.1| hypothetical protein CRE_20979 [Caenorhabditis remanei]
gi|308252519|gb|EFO96471.1| hypothetical protein CRE_20979 [Caenorhabditis remanei]
Length = 470
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 128/453 (28%), Positives = 231/453 (50%), Gaps = 76/453 (16%)
Query: 11 FMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
F+D + S+ ++ ++ + P C I R LPP+A++ Q+++ G+ P D
Sbjct: 24 FLDFLISVPPKERQRMLQKPSCCFFIYRMLPPIAQQVTIQLIW-KGSFPK--------AD 74
Query: 71 GFTKHKVAIDRLVQLRLFSE----EKKKETTYRLNSTFQ-SNLQKHLINGGALPREPMPS 125
K D Q++L + K+ Y +++ ++ S + ++ ++ + +
Sbjct: 75 DLEVTKSIED---QVKLLEDLGIVSKQANGKYLIDNDYKRSYMYAAMLGAASISSLVLET 131
Query: 126 GITARLPTLEDLEAYAIGQWECFLLQLI------SSAQAE------RPTNFSSSMMKV-- 171
R +++E A+ +W+C L L + A +E + NF+S ++
Sbjct: 132 NDEKRRG--KEVEKKAVERWDCILRYLALPSEENTQAVSETTRNLFKKANFTSGDSRIEI 189
Query: 172 ----FQRGLLI--------------------QSILRSLKFLCQGIL----------EAYN 197
FQ LL Q I+ ++ L Q +L E Y
Sbjct: 190 TTSGFQFLLLSPVKQMWTYVIEYLKLEMSQGQDIVEVIEPLIQIVLLANRGFKAEKECYQ 249
Query: 198 LN-TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT--DSSARK--EGF 252
++ + S Q+ ++ +LG++ +++ RK+ F T L T+L+ + T D+SA + G
Sbjct: 250 IDPSWSIPQQELLNHLRELGVIFIRK-RKDGVFFLTHLLTHLATNETIDDTSAERVSNGK 308
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
V+VETNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA QIIS
Sbjct: 309 VIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIIS 368
Query: 313 FLQQNAHPR---VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 369
FL+ NAHP+ + I +P V DQIRLWE + R+++ A+ Y F S D F+ CD
Sbjct: 369 FLRANAHPQCIATSGAINCLPITVADQIRLWEDERRRMDLKDAYIYSHFESEDEFQGVCD 428
Query: 370 YARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
YA++R LLW ++++ ++VN E H ++R++ +
Sbjct: 429 YAQERGILLWANAQQKLVIVNEEGHEYVRQWYK 461
>gi|344303892|gb|EGW34141.1| RNA polymerase II transcription factor B subunit 2 [Spathaspora
passalidarum NRRL Y-27907]
Length = 519
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 130/495 (26%), Positives = 219/495 (44%), Gaps = 127/495 (25%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
+KLYE P C +I R L P+AK ++ M++ + + + +++W +P A+ +L
Sbjct: 24 SKLYEAPATCLSIYRLLSPMAKFFIMSMIFNEKPVALRDLDKWCMPSARKLEYEALKQLE 83
Query: 84 QLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPRE--PMPSGITARLPTLEDLEAYA 141
L L E K + RL+STF+ N + + G P + + + + L+++A
Sbjct: 84 SLHLI-EYDSKASHIRLHSTFRQNF-RDCLTGSQDPTAFGSISTTVDKHQVDVAFLDSFA 141
Query: 142 IGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRS----------LKFLCQ- 190
+WE L ++ + P+N S++ + + G L++ R +FL Q
Sbjct: 142 SSKWETILHFMVGTESTATPSN---SVLSLLRLGGLMEGPGRGASNLKITNTGFQFLLQD 198
Query: 191 ---------------------------------GILE---AYNLNTLSEIQRSMIKDFAD 214
G LE +Y +++LSE Q SM+ D D
Sbjct: 199 VNAQIWTLLLQYLNLTQELNMDPVDVLNFIFVLGSLELGKSYAVSSLSETQVSMLADLKD 258
Query: 215 LGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK------------------------- 249
GLV ++ S F PT+LAT L+ +DSSA K
Sbjct: 259 YGLV-YRRTDTSSRFYPTRLATTLT---SDSSALKTPAMAVEQALDSVEGGTDNEVSQTA 314
Query: 250 -----EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 304
+G V++ETNF++YAY+ S L IL LF + + N++ G IT+ES+ NA NG
Sbjct: 315 PPGNIQGTVIIETNFKLYAYTNSPLEIAILNLFVHLRTRFANMVCGQITRESIRNALYNG 374
Query: 305 ITAEQIISFLQQNAHPRV---------------------------------AD------R 325
ITA+QII FL+ +AHP++ AD +
Sbjct: 375 ITADQIIRFLETHAHPQMKVLAKEKLDKKIEFDTSHNINTAGGAPQSQALRADGSVAQHK 434
Query: 326 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 385
+ +P NV DQI+LW+ +L+R++ + +++FP++ F+ YA + L+W D K
Sbjct: 435 LEILPPNVVDQIKLWQLELDRIQTFDGYLFKDFPNQQEFDKLSSYASELGVLIWSDKIKR 494
Query: 386 RLVVNAEIHMHMREF 400
+ V + + +F
Sbjct: 495 KFFVTKDGMSQVADF 509
>gi|339237219|ref|XP_003380164.1| general transcription factor IIH subunit 4 [Trichinella spiralis]
gi|316977049|gb|EFV60220.1| general transcription factor IIH subunit 4 [Trichinella spiralis]
Length = 674
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 128/447 (28%), Positives = 207/447 (46%), Gaps = 50/447 (11%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
M + + F++ ++ L + LNKLYE+ C I R LP +A++ V ++ +
Sbjct: 1 MNSTHKVPQTFLNYLSQLPSGILNKLYESAVACTGIYRYLPSVAQQIVMRLSLVSSGTTI 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKET-TYRLNSTFQSNLQKHLINGGALP 119
+E W++ + ++ L QL + E + LN F NL+ L+ A+
Sbjct: 61 ADIEGWMVDEKKDILHESLKYLRQLHILQECNLSSIESVVLNRVFAKNLRLALLCKDAIC 120
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQL-ISSAQAERPTNFSSSMMKVFQRGLLI 178
+ + + + DL++YA +WE L L + SAQ+E+ + + +V Q LI
Sbjct: 121 FKTVTVDPKHQ-KSFADLDSYASERWESVLKYLALPSAQSEKSVSVETK--RVLQDSGLI 177
Query: 179 QSILRSLKFLCQG------------------------------------ILEA------- 195
Q ++ G IL+A
Sbjct: 178 QLCDSKMQLTSDGFQFILYDRRQQLWTYLLHYLAQLEKKGSPVHDCIMLILQACLGSHRA 237
Query: 196 -YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVV 254
Y+ L+E + I+ ++GLV Q+ R WF T L + L+ + SS+ KEGF++
Sbjct: 238 AYSTENLTEAALNFIQHLREIGLVH-QRKRSAGWFYYTPLISVLTGLKSSSSSSKEGFLI 296
Query: 255 VETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFL 314
VETNFR+Y Y+ S L I+ F + Y+ PNL+ + +ES+ AF+ I+AEQII +L
Sbjct: 297 VETNFRVYCYTDSVLDLAIVSTFCEPLYRFPNLVACILNRESVRRAFQVNISAEQIIQYL 356
Query: 315 QQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDR 374
NAH + + P++P V DQI+LWE + +R + P Y F S + DYA+D
Sbjct: 357 FSNAHKNMQKQTPTIPSTVTDQIKLWEMERDRFKFDPGVMYSNFFSDTDYITIRDYAKDL 416
Query: 375 SGLLWEDSKKMRLVVNAEIHMHMREFL 401
LL E LVV+A+ H +FL
Sbjct: 417 GVLLCEHEANRALVVSADGHEQSNQFL 443
>gi|358057347|dbj|GAA96696.1| hypothetical protein E5Q_03367 [Mixia osmundae IAM 14324]
Length = 467
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 125/447 (27%), Positives = 211/447 (47%), Gaps = 71/447 (15%)
Query: 17 SLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHK 76
SL L++LY P A+ R LP A+ + L+ + IP + + + G + +
Sbjct: 24 SLPESTLSRLYALPSSSLAVFRLLPSTAQHLIVNALWQEHDIPQQDLHTYT-KRGEGRRQ 82
Query: 77 V-----AIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARL 131
+ A+ RL ++L + E T + L+ F+ +L+K L G + G AR
Sbjct: 83 LDTAIAALQRLHIVQLIAGEPTGNTVFALSHIFRKSLRKALTGAG----KDSSFGWFARS 138
Query: 132 PTLED------LEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL-------- 177
E+ L+ YA QW+ L L+ S ++++P+ ++ GLL
Sbjct: 139 SRDENALSIPQLDEYATDQWDSLLHCLVGSERSQQPSKAVIDLL--VAAGLLSSGDRDTR 196
Query: 178 -------------IQSILRSL-----------------------KFLCQGILEAYNLNTL 201
+ S L SL + Q + Y+ TL
Sbjct: 197 RITSLGFQFLLEDVNSQLWSLLLHYLKLSEDAGTDLKEVIALVFQIGNQELGRVYSSETL 256
Query: 202 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS----LTDSSARKE-GFVVVE 256
+ +Q ++K F LGLV + K + PT+LA L+ L +A +E GF+++E
Sbjct: 257 NPLQLHILKTFGGLGLVYVY---KSGDYSPTRLAVTLTSGAPPLLKAGTAEEEQGFLILE 313
Query: 257 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 316
TN+R+YAY+ + L +L LF ++ + P L+VG IT+ES+ NGI ++QII+FL
Sbjct: 314 TNYRVYAYTQNPLQIAVLNLFVALKSRFPGLVVGMITRESIKAGLANGIKSDQIIAFLTA 373
Query: 317 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 376
+AHP++ + P +P V DQI+LWE + NRV+ P Y++F S+ ++ CDYA+
Sbjct: 374 HAHPQMRKQEPLLPPTVVDQIKLWEREKNRVKTEPCFLYDDFRSQADYDLVCDYAKQIGA 433
Query: 377 LLW-EDSKKMRLVVNAEIHMHMREFLR 402
+LW + R + H+ +R F++
Sbjct: 434 VLWLGEPGSRRFATTEDGHVQVRGFIQ 460
>gi|296818081|ref|XP_002849377.1| RNA polymerase II transcription factor B subunit 2 [Arthroderma
otae CBS 113480]
gi|238839830|gb|EEQ29492.1| RNA polymerase II transcription factor B subunit 2 [Arthroderma
otae CBS 113480]
Length = 484
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/465 (27%), Positives = 210/465 (45%), Gaps = 92/465 (19%)
Query: 25 KLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
KLY+ P A+ R LP LAK +V +LY+ +PA +E WV D + ++ L
Sbjct: 22 KLYQQPSTALAVFRRMLPHLAKCFVMALLYLKDPLPATELELWVRSDSRRERDNSLSILG 81
Query: 84 QLRLFSEEKKKE--TTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLP-----TLED 136
+L + S Y + F ++L++ L+ G R G+ + P ++ D
Sbjct: 82 RLHILSSTTTSNHVRAYMVTEPFSTSLRQALM--GEDQRHSF--GVISMTPDKHHVSVAD 137
Query: 137 LEAYAIGQWECFLLQLI--SSAQAERPT-NFSSSMMKVFQRGLLIQSILRSLKFLCQG-- 191
L+ YA QWE L ++ SS R T S + ++ Q L++ R ++ +G
Sbjct: 138 LDEYARQQWEAVLGYMVGMSSLSGGRETITLSKGVKQLLQACHLVEIRDRRVEITKEGFA 197
Query: 192 ------------------------------------------ILEAYNLNTLSEIQRSMI 209
+ ++Y N L+ Q +
Sbjct: 198 FVLQDVNTQVWHILILYVENAEAIHMESVEVLSFIFLLSSLELGQSYEKNDLTPTQLRTL 257
Query: 210 KDFADLGLV-KLQQGRKESWFIPTKLATNL--------------------SMSLTDSSAR 248
D D G+V + + F PT+LAT L S T ++
Sbjct: 258 ADLTDFGIVYQHTPASGSTRFYPTRLATTLTSDSLAMPGPVSGEPVVPAPSTGPTSATDG 317
Query: 249 KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 308
GF++VETN+R+YAY++S L ++ LF+ ++++ PNLI G IT++S+ A E GITA+
Sbjct: 318 GTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQSVRRAIEMGITAD 377
Query: 309 QIISFLQQNAHPRVADRIPS--------VPENVCDQIRLWESDLNRVEMTPAHYYEEFPS 360
QI+S+L +AHP++ S +P V DQIRLW+ + +R++ T ++EF +
Sbjct: 378 QIVSYLTTHAHPQMRKTKKSTSNVAASILPPTVVDQIRLWQLERDRIKATSGFLFKEFDT 437
Query: 361 RDVFEAACDYARDRSGLLW-EDSKKMRLVVNAEIHMHMREFLRGQ 404
FEA C YA + L+W DS++M V H + FLR +
Sbjct: 438 FAEFEAPCKYAEEIGVLVWRSDSRRMFFVTR---HEQVAAFLRSR 479
>gi|150863860|ref|XP_001382481.2| RNA polymerase II transcription factor B subunit 2 (RNA polymerase
II transcription factor B p52 subunit) (RNA polymerase
II transcription factor B 52 kDa subunit)
[Scheffersomyces stipitis CBS 6054]
gi|149385116|gb|ABN64452.2| RNA polymerase II transcription factor B subunit 2 (RNA polymerase
II transcription factor B p52 subunit) (RNA polymerase
II transcription factor B 52 kDa subunit)
[Scheffersomyces stipitis CBS 6054]
Length = 515
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 132/494 (26%), Positives = 209/494 (42%), Gaps = 129/494 (26%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
+KLYE P C AI R L P+AK Y+ ML+ D + + ++ W P ++ RL
Sbjct: 24 SKLYEAPATCLAIFRLLTPMAKFYIMTMLFNDRPVALRDLDRWCKPHAKKLQFDSLKRLT 83
Query: 84 QLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLED------- 136
L L EE + RLN TF+ N + L S L T D
Sbjct: 84 SLHLI-EEDRGGNHIRLNPTFRQNFRNCLTGS-------QQSNAFGNLCTTTDKHRVDIS 135
Query: 137 -LEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRS----------L 185
L+ +A +WE L ++ + PT +S++ + + G L++ S
Sbjct: 136 FLDNFASSKWETILHFMVGTEATATPT---TSVLSLLKSGGLMEGPGNSPQNLKITNTGF 192
Query: 186 KFLCQ----------------------------------GILE---AYNLNTLSEIQRSM 208
+FL Q G LE +Y +++LS Q SM
Sbjct: 193 QFLLQDVNAQIWTLLLQYLNLTQELHMDPVDVLNFIFVLGSLELGKSYLVSSLSATQVSM 252
Query: 209 IKDFADLGLVKLQQGRKESWFIPTKLATNL----------SMSL--------------TD 244
+ D D GLV Q+ F PT+LAT L SM++ D
Sbjct: 253 LADLRDYGLV-YQRTDSSGRFYPTRLATTLTSDSAALKTPSMAIEQALGASDGGEEQQID 311
Query: 245 SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 304
+ +G V++ETNF++YAY+ S L IL LF ++ + N++ G IT+ES+ +A NG
Sbjct: 312 TPTGNQGTVIIETNFKLYAYTNSPLEIAILNLFVHLKSRFTNMVCGQITRESIRSALYNG 371
Query: 305 ITAEQIISFLQQNAHPRVA--------------------------------------DRI 326
ITA+QII FL+ +AHP++ ++
Sbjct: 372 ITADQIIKFLETHAHPQMKLLAKEKLDKKIEFDTSHNINTAGGAPQSKVSGEGNVAQHKL 431
Query: 327 PSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMR 386
+P V DQI+LW+ +L+R++ + +++F ++ F+ +YA + L+W D K +
Sbjct: 432 EILPPTVVDQIKLWQLELDRIQTFDGYLFKDFSNQQEFDTLSNYASEVGVLVWSDKIKKK 491
Query: 387 LVVNAEIHMHMREF 400
V AE + EF
Sbjct: 492 FFVTAEGMTQVAEF 505
>gi|384484453|gb|EIE76633.1| hypothetical protein RO3G_01337 [Rhizopus delemar RA 99-880]
Length = 284
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 137/231 (59%), Gaps = 23/231 (9%)
Query: 194 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS------------ 241
E Y+++TL++ Q M++D D G+V Q+ + + PT+LAT L+
Sbjct: 49 ENYSVDTLTQTQLQMLEDLRDYGIV-YQRKKHSKRYYPTRLATTLTSGKSALATVAGKYN 107
Query: 242 ----------LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 291
TD+ + +GF+++ETN+++YAY+ S L +L LF +++ + N++ G
Sbjct: 108 HMMQETNIDDTTDTESVDQGFIILETNYKLYAYTDSPLQIAVLNLFVQLQSRFRNMVTGV 167
Query: 292 ITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTP 351
IT++S+ NA GITAEQII +LQ +AHP++ P +P V DQIRLWE + NR++ TP
Sbjct: 168 ITRDSIRNALMKGITAEQIIYYLQSHAHPQMRKETPVLPLTVVDQIRLWEMERNRLKPTP 227
Query: 352 AHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
++ Y EF + F+AA YARD LLW +++K + + H +++ F++
Sbjct: 228 SYLYHEFNVQADFDAAEKYARDLGVLLWSNNQKRTMAITEAGHENVKGFVK 278
>gi|395332344|gb|EJF64723.1| transcription factor Tfb2 [Dichomitus squalens LYAD-421 SS1]
Length = 506
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 130/216 (60%), Gaps = 9/216 (4%)
Query: 194 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL--------TDS 245
++Y+ LS Q++M++D D GL++ Q+ F PT+LAT L+ S T
Sbjct: 284 QSYSTENLSATQKAMLEDLRDYGLIR-QRTATSRKFSPTRLATTLTSSSPPLPTSAGTGD 342
Query: 246 SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGI 305
+ +GF+V+ETN+R+YAY+ + L +L LF ++Y+ PNL+VG IT++S+ A NGI
Sbjct: 343 GSHVQGFIVLETNYRLYAYTDNPLQIAVLNLFVTLKYRFPNLVVGQITRDSVKKALANGI 402
Query: 306 TAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFE 365
TA+QIIS+L +AHP++ P +P V DQIRLWE + NRV+ + Y F S +E
Sbjct: 403 TADQIISYLITHAHPQMRKNKPLLPVTVQDQIRLWELERNRVKSQEGYLYTAFASHADYE 462
Query: 366 AACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 401
DYA+ +LWE+ K + E HM++R ++
Sbjct: 463 WVLDYAKKLGVVLWENPSKRCFFGSVEGHMNIRGYI 498
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 86/166 (51%), Gaps = 7/166 (4%)
Query: 23 LNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRL 82
+N+LY+ P C +I R L PL ++ V +L+++ IP TM WV +G ++ A+ L
Sbjct: 41 MNRLYQKPSSCLSIFRLLQPLERQIVMNLLWLETPIPGATMAAWVTREGKRPYQEALSTL 100
Query: 83 VQLRLFSEEKKK-----ETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPT--LE 135
L + ++ + + LN TF+++L++ + GG + + + P +E
Sbjct: 101 QSLHILPQQSTRPGPPQPVKHNLNPTFKASLRQAITGGGTSGSFGILAENDDKHPPPDIE 160
Query: 136 DLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSI 181
L+A+A+ +WE L ++SS + P S ++ + QR L+ ++
Sbjct: 161 ALDAFALERWETILYYMVSSGTGQFPAKPSQGVLYLLQRSGLMATV 206
>gi|255721741|ref|XP_002545805.1| TFIIH basal transcription factor complex subunit 2 [Candida
tropicalis MYA-3404]
gi|240136294|gb|EER35847.1| TFIIH basal transcription factor complex subunit 2 [Candida
tropicalis MYA-3404]
Length = 494
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 128/474 (27%), Positives = 213/474 (44%), Gaps = 106/474 (22%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
+KLYE P C +I R L P+AK Y+ M++ + I + +++W P A+ RL
Sbjct: 23 SKLYEAPATCLSIFRLLSPMAKFYIMSMIFNEKPIALRDLDKWCKPSARKLEFEALKRLE 82
Query: 84 QLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLED--LEAYA 141
L L E K + RL+STF+ N + + G P TA ++ L+ +A
Sbjct: 83 SLHLI-EYDSKGSHIRLHSTFRKNF-RDCLTGSQNPNAFGSISTTADKYKVDIAFLDNFA 140
Query: 142 IGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLK-------FLCQ---- 190
+WE L ++ + P S S++ + + G L++ L+ FL Q
Sbjct: 141 SSKWETILHFMVGTEATATP---SDSVLSLLKLGGLMEGPNNKLRITNSGFQFLLQDVNA 197
Query: 191 ------------------------------GILE---AYNLNTLSEIQRSMIKDFADLGL 217
G LE +Y ++TLSE Q SM+ D D GL
Sbjct: 198 QIWTLLLQYLNLTQELNMDPVDVLNFIFVLGSLELGKSYAVSTLSETQVSMLADLKDYGL 257
Query: 218 VKLQQGRKESWFIPTKLATNLSMSLTDSSARK---------------EGFVVVETNFRMY 262
V Q+ F PT+LAT L+ +DS+A K + +++ETNF++Y
Sbjct: 258 V-YQRSDTSGRFYPTRLATTLT---SDSAALKTPAMAMDEEEQQVVTKESIIIETNFKLY 313
Query: 263 AYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV 322
AY+ S L IL LF +++ + N++ G IT+ES+ NA NGITA+QII FL+ +AH ++
Sbjct: 314 AYTKSPLEIAILNLFVQLKTRFANMVCGQITRESIRNALYNGITADQIIKFLETHAHSQM 373
Query: 323 ------------------------------------ADRIPSVPENVCDQIRLWESDLNR 346
++ +P NV DQI+LW+ +L+R
Sbjct: 374 RILAKEKLDKKIEFDTSHNINTAGGAPQSKTDGSISQHKLEILPPNVVDQIKLWQLELDR 433
Query: 347 VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 400
++ + +++F ++ ++ +YA + L+W D K + V + + +F
Sbjct: 434 IQTFDGYLFKDFANQQEYDILSNYASELGVLIWADKVKRKFFVTKDGMTQVADF 487
>gi|149238950|ref|XP_001525351.1| TFIIH basal transcription factor complex subunit 2 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146450844|gb|EDK45100.1| TFIIH basal transcription factor complex subunit 2 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 503
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 204/462 (44%), Gaps = 112/462 (24%)
Query: 25 KLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQ 84
KLYE P C AI R L +AK Y+ M++ + + K + +W P A+ RL
Sbjct: 24 KLYEAPATCLAIYRLLSSMAKFYIMSMIFTEKPVSMKDLTKWCKPLAKKLEFDALKRLES 83
Query: 85 LRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLEDL---EAYA 141
L L E K T RLN+ F++N + L G+ S T P DL +++A
Sbjct: 84 LHLI-EFDSKGTHLRLNTIFRTNFRDCLT--GSQDPNAFGSVSTTADPNKVDLAFLDSFA 140
Query: 142 IGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQS--------ILRSLKFLCQ--- 190
+WE L ++ + + P+ S++K+ GL+ Q +FL Q
Sbjct: 141 SQKWESILHFMVGTEGTKPPSKSVLSLLKL--GGLMEQHEEDGTLNITNTGFQFLLQDVN 198
Query: 191 -------------------------------GILE---AYNLNTLSEIQRSMIKDFADLG 216
G LE +Y+++ LSE Q SM+ D D G
Sbjct: 199 AQIWTLLLQYLNLTQELNMDAVDVLNFIFILGSLELGNSYSVSNLSETQVSMLADLKDYG 258
Query: 217 LVKLQQGRKESWFIPTKLATNLS---------------------MSLTDSSARKEGFVVV 255
LV Q+ S F PT+LAT L+ SL S+ KE +++
Sbjct: 259 LV-YQKSDTSSRFYPTRLATTLTSDSAALKTPSMAVEQALDETETSLASSTQTKES-III 316
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETNF+MYAY+ S L IL LF ++ + N+I G IT+ES+ NA NGITA+QII FL+
Sbjct: 317 ETNFKMYAYTNSPLEIAILNLFVHMKTRFSNMICGQITRESIRNALYNGITADQIIKFLE 376
Query: 316 QNAHPRV------------------------------------ADRIPSVPENVCDQIRL 339
+AHP++ R+ +P NV DQI+L
Sbjct: 377 THAHPQMRALAKERLDKKVEFDASHNINTAGGAPQSKTDGAISQHRLEVLPPNVVDQIKL 436
Query: 340 WESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWED 381
W+ +L+R++ + +++F ++ ++ +YA + L+W D
Sbjct: 437 WQLELDRIQTFDGYLFKDFANQQEYDMLSNYAAEIGVLIWAD 478
>gi|448527133|ref|XP_003869438.1| TFIIH and nucleotide excision repair factor 3 complex subunit
[Candida orthopsilosis Co 90-125]
gi|380353791|emb|CCG23303.1| TFIIH and nucleotide excision repair factor 3 complex subunit
[Candida orthopsilosis]
Length = 500
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 128/484 (26%), Positives = 215/484 (44%), Gaps = 110/484 (22%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
+KLYE C +I R L P+AK Y+ M++ + I + + +W P A+ RL
Sbjct: 23 SKLYEASATCLSIYRLLSPMAKFYIMSMIFNEKPIAMRDLTKWCKPSAKKMEFEALKRLE 82
Query: 84 QLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPRE--PMPSGITARLPTLEDLEAYA 141
L L + K T RLNS F+SN + + G P + +G + L+ +A
Sbjct: 83 SLHLIDYDGKG-THVRLNSIFRSNF-RDCLTGSQDPNAFGSISTGDDVDKVEISFLDKFA 140
Query: 142 IGQWECFLLQLISSAQAERPTNF------------SSSMMKVFQRG-------------- 175
+WE L ++ + P++ S + + G
Sbjct: 141 SHEWETILHFMVGTEGTPTPSSSVLSLLKLGGLMEGESTLNITNTGFQFLLQDANAQIWT 200
Query: 176 LLIQSI----------LRSLKFL----CQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQ 221
LL+Q + + L F+ C + + Y+++ LSE Q SM+ D DLGLV Q
Sbjct: 201 LLLQYLNLTSELNMNPVDVLNFIFILGCLELGKGYSVSNLSETQVSMLADLKDLGLV-YQ 259
Query: 222 QGRKESWFIPTKLATNLSMSLTDSSARK----------------------EGFVVVETNF 259
+ + F PT+LAT L+ +DSSA K +++ETNF
Sbjct: 260 KSDTSNKFYPTRLATTLT---SDSSALKTPSMAVQQALEENEEQMMASNSRESIIIETNF 316
Query: 260 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAH 319
++YAY+ S L IL LF +++ + N++ G IT+ES+ NA NGIT++QII FL+ +AH
Sbjct: 317 KIYAYTNSPLEIAILNLFVQMKTRFSNMVCGQITRESIRNALYNGITSDQIIKFLETHAH 376
Query: 320 PRV------------------------------------ADRIPSVPENVCDQIRLWESD 343
P++ ++ +P NV DQI+LW+ +
Sbjct: 377 PQMRALAKEKLDKKVEFDASHNINTAGGAPQSKTDGAISQHKLEVIPPNVVDQIKLWQLE 436
Query: 344 LNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF--- 400
L+R++ + +++F ++ ++ +YA + L+W D K + V + + +F
Sbjct: 437 LDRIQTVEGYLFKDFANQQEYDTLSNYATELGVLVWGDKVKRKFFVTKDGMAQVADFANR 496
Query: 401 -LRG 403
LRG
Sbjct: 497 KLRG 500
>gi|212535854|ref|XP_002148083.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
gi|210070482|gb|EEA24572.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
Length = 481
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 134/468 (28%), Positives = 217/468 (46%), Gaps = 94/468 (20%)
Query: 11 FMDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLP 69
+++ + LT KLY+ P AI R LP LAK V +LY+ +PA +E WV
Sbjct: 11 YLEQLPGLT---FQKLYQQPSTALAIFRRMLPDLAKCLVMAVLYMRDPLPAADLELWVKA 67
Query: 70 DGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLING------GALPRE 121
+ + AI L +L + + + Y + + F S+L++ L G
Sbjct: 68 ESKKERDHAISILGRLHIMTNTMTSNQVRAYMVTNPFASSLRQALTGAENSQSFGVPCST 127
Query: 122 PMPSGITARLPTLEDLEAYAIGQWECFLLQLI-SSAQAERPT-NFSSSMMKVFQRGLLIQ 179
P P+ ++ + DL+ YA QWE L ++ +S R T + S + ++ Q G L++
Sbjct: 128 PDPNAVS-----IADLDEYARRQWEGVLGYMVGTSGPGVRETVSLSRGVKQLLQAGHLVE 182
Query: 180 ------SILR-SLKFLCQGI-----------------LEAYNLNTLSEI----------- 204
I + F+ Q + L+ ++ LS I
Sbjct: 183 IHHGRVDITQDGFAFVLQDVNTQVWQIIILYVESAKALQVNDVEVLSFIFLLSSLELGQS 242
Query: 205 ---------QRSMIKDFADLGLVKLQQGRKES-WFIPTKLATNL-------------SMS 241
Q + D D G++ E+ F PT+LAT L S+S
Sbjct: 243 YEKRHLTPDQLRALADLTDFGIIYQHAPASEADRFYPTRLATTLTSDSSALSNTMSSSLS 302
Query: 242 LTDSSARKE---GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 298
++A E GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G IT++S+
Sbjct: 303 AQTNAATGEPGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKITRQSIR 362
Query: 299 NAFENGITAEQIISFLQQNAHPRVADR-----------IPS--VPENVCDQIRLWESDLN 345
A E GITA+QIIS+L +AHP++ IP +P V DQIRLW+ + +
Sbjct: 363 RAVEMGITADQIISYLSTHAHPQMRKEGAVKSTSNTAGIPRSVLPPTVVDQIRLWQLERD 422
Query: 346 RVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAE 392
R++ TP ++EF S +E C YA + L+W+ D K+M V E
Sbjct: 423 RIKATPGFLFKEFASLAEYEGPCRYAEEIGVLVWKSDRKRMFFVTRYE 470
>gi|193654859|ref|XP_001944632.1| PREDICTED: general transcription factor IIH subunit 4-like
[Acyrthosiphon pisum]
Length = 470
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 120/439 (27%), Positives = 211/439 (48%), Gaps = 70/439 (15%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKH-KVAIDRL 82
++LY +P C A+ R LP +A+ + ++L+I+ +P + WV P +++ + +I+
Sbjct: 42 DRLYIHPPTCLAVFRVLPDIAQVFTLRILFIEQPVPLSALSSWV-PAKYSRELEESIEVA 100
Query: 83 VQLRLF--SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPT--LEDLE 138
+ L ++ + + LNSTF+ L+ +++GG R +P+ L ++ L+
Sbjct: 101 INLHIWKLTSVSGGLKGWILNSTFKKKLKVAIMSGG---RTTVPNSDETALKARDIDILD 157
Query: 139 AYAIGQWECFLLQLISSAQAERPTNFSSSMMKVF-QRGLLIQSILRS------------- 184
+YA +WEC L ++ S SS ++V GL+++ S
Sbjct: 158 SYAYERWECILYYMVGSKHK----GISSDAVRVLLNAGLMVRDTDNSPVITSTGYQFLLL 213
Query: 185 ---------------------------LKFLCQGILEA----YNLNTLSEIQRSMIKDFA 213
L FL Q L Y + + E ++ ++
Sbjct: 214 DMATQVWYFMLHYMETVESRGLDLAQYLIFLFQIHLSTLGWDYITDGMPENLQTFLQHLQ 273
Query: 214 DLGLV---KLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFVVVETNFRMYAYSTS 267
+ GLV KL+ GR F PT+L + + +S R KE ++VVETNFR+YA + S
Sbjct: 274 EFGLVYQRKLKAGR----FCPTRLVIEMGRENSHTSKRMKKKERYIVVETNFRIYAMTDS 329
Query: 268 KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIP 327
L ++ LF+ + Y+ PN+ G +T++S+ A NGITA QI+ FL + HP++ +
Sbjct: 330 DLKVALVALFTHMLYRFPNMSAGILTRDSVQTALRNGITAAQIVRFLTVHTHPQMQE--C 387
Query: 328 SVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRL 387
+P+ V DQI LWE + NR+ Y + + + +EA +YA D LLW D ++ +
Sbjct: 388 GMPQTVIDQIYLWEYERNRLTYRDGVLYSDINTPNDYEAIKNYAADIGALLWCDERQRNI 447
Query: 388 VVNAEIHMHMREFLRGQNK 406
+V+ + H + F + Q K
Sbjct: 448 IVSTDGHNDVTTFWKKQPK 466
>gi|242794214|ref|XP_002482325.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces stipitatus ATCC 10500]
gi|218718913|gb|EED18333.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces stipitatus ATCC 10500]
Length = 481
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 133/456 (29%), Positives = 211/456 (46%), Gaps = 91/456 (19%)
Query: 23 LNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDR 81
KLY+ P AI R LP LAK V +LY+ +PA +E W+ + + AI
Sbjct: 20 FQKLYQQPSTALAIFRRMLPDLAKCLVMALLYMRDPLPAADLELWIKGESKKERDHAISI 79
Query: 82 LVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLING------GALPREPMPSGITARLPT 133
L +L + + + Y + + F S+L++ L G P P+ ++
Sbjct: 80 LGRLHIMTNTMTSNQVRAYMVTNPFASSLRQALTGAENSQSFGVPCSTPDPNPVS----- 134
Query: 134 LEDLEAYAIGQWECFLLQLI-SSAQAERPT-NFSSSMMKVFQRGLLIQ------SILR-S 184
+ DL+ YA QWE L ++ +S R T + S + ++ Q G L++ I +
Sbjct: 135 IADLDEYARRQWEGVLGYMVGTSGPGVRETVSLSRGVKQLLQAGHLVEIHHGRVDITQDG 194
Query: 185 LKFLCQGI-----------------LEAYNLNTLSEI--------------------QRS 207
F+ Q + L+ ++ LS I Q
Sbjct: 195 FAFVLQDVNTQVWQIIILYVESAKALQVNDVEVLSFIFLLSSLELGQSYEKKHLTPDQLR 254
Query: 208 MIKDFADLGLV-KLQQGRKESWFIPTKLATNLS-----MSLTDSSARK-----------E 250
+ D D G+V + + F PT+LAT L+ +S T SSA
Sbjct: 255 ALTDLTDFGIVYQYPSAAEADRFYPTRLATTLTSDSSALSNTMSSALSAQTNAATGEPGS 314
Query: 251 GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQI 310
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G IT++S+ A E GITA+QI
Sbjct: 315 GFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKITRQSIRRAVEMGITADQI 374
Query: 311 ISFLQQNAHP--RVADRIPS-----------VPENVCDQIRLWESDLNRVEMTPAHYYEE 357
IS+L +AHP R D + S +P V DQIRLW+ + +R++ TP ++E
Sbjct: 375 ISYLSTHAHPQMRKEDAVKSTSNTAGLPRSVLPPTVVDQIRLWQLERDRIKATPGFLFKE 434
Query: 358 FPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAE 392
F S +E C YA + L+W+ D K+M V E
Sbjct: 435 FASLAEYEGPCRYAEEIGVLVWKSDRKRMFFVTRYE 470
>gi|449296697|gb|EMC92716.1| hypothetical protein BAUCODRAFT_259506 [Baudoinia compniacensis
UAMH 10762]
Length = 489
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/444 (27%), Positives = 199/444 (44%), Gaps = 79/444 (17%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
+D + L KLY+ P AI R LP LAK V MLY+ ++ W+ PD
Sbjct: 10 LDYLEQLPGTTFTKLYQQPSTALAIFRRMLPHLAKTLVMAMLYMPKPFAVADVDVWIKPD 69
Query: 71 --GFTKHKVAIDRLVQLRLF---SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPS 125
G A+ L +LR+ +EK Y+L+ F +L+ L GG +PS
Sbjct: 70 AEGLQARDRALSILQRLRILFDTRDEKDGRPAYKLSDGFARSLRMALTGGGNHRSFGVPS 129
Query: 126 GITARLPTLED-LEAYAIGQWECFLLQLISSAQAERPTN---FSSSMMKVFQRGLLIQS- 180
+ P L+A+A QWE L ++ SA A + S+ ++ Q+G +
Sbjct: 130 NAPDKQPVSGSYLDAFARQQWEAILYYVVGSAHAGLGGSTDAISAGTKQLLQKGEFVSVR 189
Query: 181 ------ILRSLKFLCQ----------------------------------GILE---AYN 197
R FL Q G LE +Y+
Sbjct: 190 GREAHITQRGFTFLLQEINAQIWTLLIVYLEVSGALHMDPVDVLSFLFTLGSLELGISYS 249
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT-------------- 243
L+ Q+ M+ D +D GLV ++ E+ + PT+LAT L+
Sbjct: 250 TTNLTPTQQQMLDDLSDFGLV-YRRSNDEARYYPTRLATTLTSDAPALPNTSLTSTTSTT 308
Query: 244 ---------DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 294
+SA ++G++++ETN+R+YAY++S L IL LF+ ++ + PNLI +TK
Sbjct: 309 TLASSSTDPSASANEKGYIILETNYRLYAYTSSPLPITILSLFATLKTRYPNLITAKLTK 368
Query: 295 ESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHY 354
S+ +A +GIT++QII++L +AHP + + P +P V DQIRLW+ + R+
Sbjct: 369 SSIQSAIASGITSDQIITYLTTHAHPILRRQNPVLPPTVVDQIRLWQIEGERMTAWKGFL 428
Query: 355 YEEFPSRDVFEAACDYARDRSGLL 378
+ + + ++ A YA D G+L
Sbjct: 429 IRDVGTAEEYDKAVQYA-DALGVL 451
>gi|403217068|emb|CCK71563.1| hypothetical protein KNAG_0H01490 [Kazachstania naganishii CBS
8797]
Length = 519
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 136/493 (27%), Positives = 217/493 (44%), Gaps = 121/493 (24%)
Query: 25 KLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQ 84
+LYE+P C AI R LP LAK ++ M++ D + + ++ WV +G + + AI +
Sbjct: 26 RLYESPATCLAIYRLLPQLAKFFIMSMVFNDNDVSLRDLDRWVKANGKIQFQEAIKSMKS 85
Query: 85 LRLFSEEKKK-ETTYRLNSTFQSNLQKHLING------GAL--PREPMPSGI-TARLPTL 134
L L K + LN TF+ + + L G G + E + +G+ RL
Sbjct: 86 LHLIIPTKGAGQLMIGLNPTFRDSFRNALTGGEVSNSFGTVVNDDEDLRTGVLNMRL--- 142
Query: 135 EDLEAYAIGQWECFLLQLISSAQAERPTNF---------------SSSMMKVFQRGL--L 177
L+ Y+ +WE L ++ + +E P++ ++ K+ G L
Sbjct: 143 --LDEYSANKWETILHFMVGTPMSEVPSSNVLNLLKHSKLMEESEATGAFKITNEGFQFL 200
Query: 178 IQSI--------LRSLK---------------FLCQGILE---AYNLNTLSEIQRSMIKD 211
+Q I L+ LK G LE AY+ LSE QR MIKD
Sbjct: 201 LQEINSQIWTLLLQYLKMSESLQMDAVDVLNFIFMLGALEVGKAYSTEGLSETQRIMIKD 260
Query: 212 FADLGLVKLQQGRKESWFIPTKLA-------------------TNLSMSLTDSSAR---- 248
D G+V Q+ + F PT LA T LS + D+S+
Sbjct: 261 MRDYGIV-FQKNSTSNVFYPTSLAIMLTSDSKTVLRTASGAMNTVLSQNKEDTSSTNKSA 319
Query: 249 ---------------------KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 287
++G ++VETNF++Y+YS S L IL LF ++ + N+
Sbjct: 320 TDKANNDTAELDQVGTQSQEVQDGVLIVETNFKVYSYSNSPLQIAILSLFVHLKSRFINM 379
Query: 288 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRIPSV 329
+ G ITK S+ NA +NGITAEQII++L+ +AHP++ D + +
Sbjct: 380 VTGQITKRSIINALDNGITAEQIIAYLETHAHPQMRRLAEAQLEKKRELDQNCKDPLQIL 439
Query: 330 PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVV 389
P V DQI+LW+ + +RV Y +F S + YA+D +LW + KK +L V
Sbjct: 440 PPTVVDQIKLWQLEKDRVMAFEGSLYSDFESNAEYNILKKYAQDIGVMLWSEDKKRKLFV 499
Query: 390 NAEIHMHMREFLR 402
+ E + + ++ +
Sbjct: 500 SQEGNSQVLDYAK 512
>gi|401623322|gb|EJS41426.1| tfb2p [Saccharomyces arboricola H-6]
Length = 513
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 134/487 (27%), Positives = 219/487 (44%), Gaps = 111/487 (22%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
N+LY +P C AI R LPPLAK ++ M++ + +P +++WV +G + + AI +
Sbjct: 23 NRLYTSPATCLAIYRILPPLAKFFIMAMVFNENEVPLLDLDKWVNSNGKLQFQDAIKSMK 82
Query: 84 QLRLFSEEKKKET-TYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAI 142
L L K T LN TF+ +L+ L G R + + +L+ L+ Y+
Sbjct: 83 SLHLLIPNKSSGTLMINLNPTFKISLRNALTGGEV--RNSFGIVVEDNVVSLKMLDEYSA 140
Query: 143 GQWECFLLQLISSAQAERPTN---------------FSSSMMKVFQRGL--LIQSI---- 181
+WE L ++ + A+ P+ S+ K+ G L+Q I
Sbjct: 141 NKWETILHFMVGTPLAKIPSEKVLNLLKHSKLMEEINSTGEFKITNEGFQFLLQEINSQL 200
Query: 182 ----LRSLKFL---------------CQGILE---AYNLNTLSEIQRSMIKDFADLGLVK 219
L+ LK + G LE AY ++ LS+ QR M++D D GLV
Sbjct: 201 WTLLLQYLKVIETSKMDLVDVLHFIFMLGALEVGKAYKIDALSDTQRIMLQDMRDYGLV- 259
Query: 220 LQQGRKESWFIPTKLATNLSM---------SLTDSSARK--------------------- 249
Q+ ++ F PTKLA L+ + DS R+
Sbjct: 260 FQKHSNDTIFYPTKLALMLTSDTKTIRSASNAMDSVLRQNREEPSANEEGANGKATTDTT 319
Query: 250 ----------------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 293
+G ++VETNF++Y+YS S L +L LF ++ + N+++G IT
Sbjct: 320 TSDDLNKADLKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQIT 379
Query: 294 KESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRIPSVPENVCD 335
+ES+ A NGITAEQII++L+ +AHP++ + + +P V D
Sbjct: 380 RESIRRALTNGITAEQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVD 439
Query: 336 QIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHM 395
QIRLW+ +L+RV Y +F + + YA+D LLW+D KK + ++ E +
Sbjct: 440 QIRLWQLELDRVMTYEGSLYSDFETSQEYNVLNKYAQDIGVLLWKDDKKKKFFISKEGNS 499
Query: 396 HMREFLR 402
+ +F +
Sbjct: 500 QVLDFAK 506
>gi|452839401|gb|EME41340.1| hypothetical protein DOTSEDRAFT_156149 [Dothistroma septosporum
NZE10]
Length = 497
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 132/459 (28%), Positives = 207/459 (45%), Gaps = 85/459 (18%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEW 66
A+ +D + L +LY+ P AI R LP LAK V MLY+ A ++ W
Sbjct: 5 AQRALDYLEQLPGTTFTRLYQQPSTALAIFRRMLPHLAKTLVMAMLYMPTPFAAADLDTW 64
Query: 67 VLPDGFTKH--KVAIDRLVQLR-LFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPM 123
+ PD ++ A+ L +LR LF ++ + Y+L+ + +L+ L GG +
Sbjct: 65 IRPDMPSQQARDKALSTLQRLRILFDDQHNGKPAYKLSPAYGKSLRLALTGGGDHRSFGV 124
Query: 124 PSGITARLP-TLEDLEAYAIGQWECFLLQLISSAQA--ERPTNFSSSMMKVFQRG----- 175
P + + E L+ +A QWE L ++ SA + S + Q+G
Sbjct: 125 PCSTPDKTSISTEYLDTFARRQWEAILYYVVGSANRALSGEVDISPGTKSLLQKGEFVNV 184
Query: 176 --------------------------------LLIQSILR-----SLKFL-CQGILE--- 194
L + S LR L FL G LE
Sbjct: 185 MSGGKQRMISTTGFTFLLQDVNAQVWSLLIVYLEVSSSLRMDPVEVLSFLFTLGSLELGI 244
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL---------------- 238
+Y+ L+ Q+ M+ D AD GL+ + ++ PT+LAT L
Sbjct: 245 SYSTANLTPTQQQMLDDLADFGLIYRRTPDSHRYY-PTRLATTLTSDAPALTNNSLMKTT 303
Query: 239 ------SMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 292
S L S++ ++GF+++ETN+R+YAY++S L IL LF+ + + PNLI I
Sbjct: 304 VMTGDPSTDLAASASDEKGFIILETNYRLYAYTSSPLLISILSLFASLNTRYPNLITAKI 363
Query: 293 TKESLYNAFENGITAEQIISFLQQNAHP-----RVADRIPSVPENVCDQIRLWESDLNRV 347
TK S NA GIT++QII +L +AHP A+ P +P V DQI+LW+ + R+
Sbjct: 364 TKASTQNAIAAGITSDQIIDYLTTHAHPVLRRQAAANDAPILPPTVVDQIKLWQMEGERM 423
Query: 348 EMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMR 386
E T + + S++ ++ A +YA D G+L SK+ R
Sbjct: 424 EATKGYLIRDIGSQEEYDKAVNYA-DAIGVL---SKEFR 458
>gi|6325135|ref|NP_015203.1| Tfb2p [Saccharomyces cerevisiae S288c]
gi|62901134|sp|Q02939.1|TFB2_YEAST RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=General transcription and DNA repair
factor IIH subunit TFB2; Short=TFIIH subunit TFB2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|1163092|gb|AAB68240.1| Tfb2p: TFIIH subunit [Saccharomyces cerevisiae]
gi|1778059|gb|AAB40628.1| transcription/repair factor TFIIH subunit Tfb2, partial
[Saccharomyces cerevisiae]
gi|151942676|gb|EDN61022.1| transcription initiation factor TFIIH subunit [Saccharomyces
cerevisiae YJM789]
gi|190407835|gb|EDV11100.1| RNA polymerase II transcription factor B subunit 2 [Saccharomyces
cerevisiae RM11-1a]
gi|256274256|gb|EEU09164.1| Tfb2p [Saccharomyces cerevisiae JAY291]
gi|259150035|emb|CAY86838.1| Tfb2p [Saccharomyces cerevisiae EC1118]
gi|285815419|tpg|DAA11311.1| TPA: Tfb2p [Saccharomyces cerevisiae S288c]
gi|323331200|gb|EGA72618.1| Tfb2p [Saccharomyces cerevisiae AWRI796]
gi|323335024|gb|EGA76314.1| Tfb2p [Saccharomyces cerevisiae Vin13]
gi|323346175|gb|EGA80465.1| Tfb2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352000|gb|EGA84539.1| Tfb2p [Saccharomyces cerevisiae VL3]
gi|365762780|gb|EHN04313.1| Tfb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392295887|gb|EIW06990.1| Tfb2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 513
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 134/487 (27%), Positives = 219/487 (44%), Gaps = 111/487 (22%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
N+LY +P C AI R LPPLAK ++ M++ + +P +++WV +G + + AI +
Sbjct: 23 NRLYTSPATCLAIYRILPPLAKFFIMAMVFNENEVPLLDLDKWVNSNGKLQFQNAIKSMK 82
Query: 84 QLRLFSEEKKKET-TYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAI 142
L L K T LN TF+ +L+ L G + + + +L+ L+ Y+
Sbjct: 83 SLHLLIPNKSSGTLMINLNPTFKISLRNALTGGEV--QNSFGVVVEENVVSLDLLDEYSA 140
Query: 143 GQWECFLLQLISSAQAERPTN---------------FSSSMMKVFQRGL--LIQSI---- 181
+WE L ++ + A+ P+ S+ K+ G L+Q I
Sbjct: 141 NKWETILHFMVGTPLAKIPSEKVLNLLKHSKLMEEVNSTGEFKITNEGFQFLLQEINSQL 200
Query: 182 ----LRSLKFL---------------CQGILE---AYNLNTLSEIQRSMIKDFADLGLVK 219
L+ LK + G LE AY ++ LSE QR M++D D GLV
Sbjct: 201 WTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDALSETQRIMLQDMRDYGLV- 259
Query: 220 LQQGRKESWFIPTKLATNLSM---------SLTDSSARK--------------------- 249
Q+ +S F PTKLA L+ + DS R+
Sbjct: 260 FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMDSVLRQNREEPSVNEDGANGKSTTDIT 319
Query: 250 ----------------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 293
+G ++VETNF++Y+YS S L +L LF ++ + N+++G IT
Sbjct: 320 TSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQIT 379
Query: 294 KESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRIPSVPENVCD 335
+ES+ A NGITA+QII++L+ +AHP++ + + +P V D
Sbjct: 380 RESIRRALTNGITADQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVD 439
Query: 336 QIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHM 395
QIRLW+ +L+RV Y +F + + YA+D LLW+D KK + ++ E +
Sbjct: 440 QIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNS 499
Query: 396 HMREFLR 402
+ +F +
Sbjct: 500 QVLDFAK 506
>gi|313224499|emb|CBY20289.1| unnamed protein product [Oikopleura dioica]
Length = 411
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/406 (28%), Positives = 212/406 (52%), Gaps = 41/406 (10%)
Query: 35 AILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKK 94
++ R LP +AK + ++L+I+ I +E WV + K +VA++ + LR++ E
Sbjct: 2 SVFRELPQIAKHIIIRILFINQQIAKPLIESWVADEHREKFEVAMEIITGLRIW-ENTND 60
Query: 95 ETTYRLNSTFQSNLQKHLINGGALPREPMPS-GITARLPTLEDLEAYAIGQWE---CFLL 150
+ LN++F++ LQ+ L GG R + + G T+E L+ Y +W+ FL
Sbjct: 61 GIAFNLNNSFRTYLQEALFGGGETWRPAVETLGADKNAKTVEQLDTYTKERWDQILSFLT 120
Query: 151 Q--------LIS--------SAQAERPTNF-----SSSMMKVFQRGL-----LIQSILRS 184
Q +IS A E+ F SS + + + L L S++
Sbjct: 121 QEQGKLSEEVISLLKYAGLCDANGEKRFQFLLLDRSSQVWYLLVQYLGYVQKLGLSLVNV 180
Query: 185 LKFLCQGILEAYNL-----NTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS 239
L F+ Q ++ N+ +EI R +I+ F ++GL+ ++ KE F PT+LA ++S
Sbjct: 181 LAFVLQLGYCSFGTDYPCDNSNNEISR-VIQHFREMGLI-FKRKSKEQRFYPTRLAQSIS 238
Query: 240 MS---LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 296
++ S +E F++VETN+R+YAY+ S+LH ++ LF++++Y+ P +IV ++++S
Sbjct: 239 IAGGKKASSEDVQEQFILVETNYRIYAYTDSELHYALISLFAEVQYRFPYMIVAQMSRDS 298
Query: 297 LYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYE 356
+ + + GI+AEQI+++L+ +AHP VP+ V D I LW + R++ Y
Sbjct: 299 IQQSADYGISAEQILNYLRSSAHPIARKNKHWVPQVVEDNIHLWCKERERLKFNDGLLYH 358
Query: 357 EFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+F ++ FE YA+D L+W + ++ +VV H ++ + +
Sbjct: 359 QFLDQEAFEMLKSYAQDIRALVWANDERRFMVVAPWSHDQIKSYYK 404
>gi|392901990|ref|NP_001255863.1| Protein Y73F8A.24, isoform a [Caenorhabditis elegans]
gi|26985915|emb|CAB70230.2| Protein Y73F8A.24, isoform a [Caenorhabditis elegans]
Length = 481
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 132/459 (28%), Positives = 227/459 (49%), Gaps = 86/459 (18%)
Query: 11 FMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA-------KTM 63
F+D + ++ + +L + P I R LPP+A++ Q+++ G+ P K +
Sbjct: 23 FLDFLITIPPKTRQRLLQKPSCAFFIYRMLPPIAQQTTIQLIW-KGSFPTASDVEETKEI 81
Query: 64 EEWV--LPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGAL-PR 120
E+ V L D H+ D + + +T Y+ + + + L I+ L P
Sbjct: 82 EDQVKLLKDLGLVHRQTTDGKLNI---------DTDYKRSYMYAAMLGAAQISSLVLEPN 132
Query: 121 EPMPSGITARLPTLEDLEAYAIGQWECFL--LQLISSAQAE----------RPTNFSS-- 166
E G +D+E A+ +W+C L L L S + + NF+S
Sbjct: 133 EGNRRG--------KDVEKKAVERWDCILRYLALPSEENTQAVSETTRNLFKKANFTSGG 184
Query: 167 -SMMKVFQRG---LLI---------------------QSILRSLKFLCQGIL-------- 193
+ +++ G LL+ Q I+ ++ L Q +L
Sbjct: 185 DTQIEITTFGFQFLLLSPVKQMWTYVIEYLKLEMSQGQDIVEVIEPLIQIVLLANRGFKA 244
Query: 194 --EAYNLNT-LSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT--DSSAR 248
E Y ++ +E Q ++ +LG++ +++ RK+ F T+L T+L+ + T D SA
Sbjct: 245 ERECYQIDANWTEPQNELLNHLRELGVIFIRK-RKDGVFFLTQLLTHLATNETIDDVSAE 303
Query: 249 K--EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGIT 306
K G V+VETNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A ++GIT
Sbjct: 304 KVSNGKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGIT 363
Query: 307 AEQIISFLQQNAHPR---VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDV 363
A QIISFL+ NAHP+ + + +P V DQIRLWE + R+ + A+ Y F S D
Sbjct: 364 AAQIISFLRANAHPQCIATSGPVNCLPITVADQIRLWEDERRRMNLKDAYIYSHFESEDE 423
Query: 364 FEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
F C+YAR ++ LLW D+++ ++VN + H +R++ +
Sbjct: 424 FHGVCEYARQQNILLWSDNQQKLVIVNEDGHELVRQWYK 462
>gi|323302721|gb|EGA56527.1| Tfb2p [Saccharomyces cerevisiae FostersB]
Length = 505
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 134/485 (27%), Positives = 218/485 (44%), Gaps = 111/485 (22%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
N+LY +P C AI R LPPLAK ++ M++ + +P +++WV +G + + AI +
Sbjct: 23 NRLYTSPATCLAIYRILPPLAKFFIMAMVFNENEVPLLDLDKWVNSNGKLQFQNAIKSMK 82
Query: 84 QLRLFSEEKKKET-TYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAI 142
L L K T LN TF+ +L+ L G + + + +L+ L+ Y+
Sbjct: 83 SLHLLIPNKSSGTLMINLNPTFKISLRNALTGGEV--QNSFGVVVEENVVSLDLLDEYSA 140
Query: 143 GQWECFLLQLISSAQAERPTN---------------FSSSMMKVFQRGL--LIQSI---- 181
+WE L ++ + A+ P+ S+ K+ G L+Q I
Sbjct: 141 NKWETILHFMVGTPLAKIPSEKVLNLLKHSKLMEEVNSTGEFKITNEGFQFLLQEINSQL 200
Query: 182 ----LRSLKFL---------------CQGILE---AYNLNTLSEIQRSMIKDFADLGLVK 219
L+ LK + G LE AY ++ LSE QR M++D D GLV
Sbjct: 201 WTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDALSETQRIMLQDMRDYGLV- 259
Query: 220 LQQGRKESWFIPTKLATNLSM---------SLTDSSARK--------------------- 249
Q+ +S F PTKLA L+ + DS R+
Sbjct: 260 FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMDSVLRQNREEPSVNEDGANGKSTTDIT 319
Query: 250 ----------------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 293
+G ++VETNF++Y+YS S L +L LF ++ + N+++G IT
Sbjct: 320 TSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQIT 379
Query: 294 KESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRIPSVPENVCD 335
+ES+ A NGITA+QII++L+ +AHP++ + + +P V D
Sbjct: 380 RESIRRALTNGITADQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVD 439
Query: 336 QIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHM 395
QIRLW+ +L+RV Y +F + + YA+D LLW+D KK + ++ E +
Sbjct: 440 QIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNS 499
Query: 396 HMREF 400
+ +F
Sbjct: 500 QVLDF 504
>gi|444320663|ref|XP_004180988.1| hypothetical protein TBLA_0E04140 [Tetrapisispora blattae CBS 6284]
gi|387514031|emb|CCH61469.1| hypothetical protein TBLA_0E04140 [Tetrapisispora blattae CBS 6284]
Length = 518
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 123/464 (26%), Positives = 205/464 (44%), Gaps = 99/464 (21%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
N+LYE+P C AI R LP LAK ++ M++ + + + ++ WV +G + + AI +
Sbjct: 23 NRLYESPATCLAIYRLLPQLAKFFIMSMVFNENEVMLRDLDRWVKSNGKLQFQEAIKSMK 82
Query: 84 QLRLFSEEKKKETTY-RLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAI 142
L L K LNSTF+S+L+ L G + + LE Y+
Sbjct: 83 SLHLLVPGKNSGAVMINLNSTFRSSLKNALTGGEINNSFGVIVDNDRDAVKVSMLEEYST 142
Query: 143 GQWECFLLQLISSAQAERPT---------------NFSSSMMKVFQRG------------ 175
+WE L ++ + A P+ N ++ K+ G
Sbjct: 143 KKWETILHFMVGTPLATTPSENVLNLLKHSKLMEENEETNEFKITNEGFQFLLQESNSQI 202
Query: 176 --LLIQSI----------LRSLKFLCQ-GILE---AYNLNTLSEIQRSMIKDFADLGLVK 219
LL+Q + + L F+ G LE AY++++LSE Q+ M+KD D GL+
Sbjct: 203 WTLLLQYLKLTETLHMDPVDVLNFIFMLGALEFGKAYSISSLSETQKIMLKDMRDYGLI- 261
Query: 220 LQQGRKESWFIPTKLATNLSMSL------------------------------------T 243
Q+ + F PT +AT L+ +
Sbjct: 262 FQKNSNANVFYPTSMATMLTSDARNVRTASGAIDHILQRSQETNKNSNNDDDEDVDQVGS 321
Query: 244 DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFEN 303
++ A +G +++ETNF++Y+YS S L +L LF ++ + N++ G IT++S+ A N
Sbjct: 322 NTQATADGALIIETNFKLYSYSNSPLQIAVLSLFVHLKTRFSNMVTGQITRDSIRRALRN 381
Query: 304 GITAEQIISFLQQNAHPRV------------------ADRIPSVPENVCDQIRLWESDLN 345
GITAEQII++L ++HP++ D + +P V DQI+LW+ +L+
Sbjct: 382 GITAEQIIAYLLTHSHPQMRRLAEGNLEKKLELDPNAKDSLQILPPTVVDQIKLWQLELD 441
Query: 346 RVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVV 389
R+ Y +F + + YA D LLW++ KK + V
Sbjct: 442 RIISHEGSLYSDFENNQEYNLLSTYAEDIGVLLWKNDKKRKFFV 485
>gi|156839389|ref|XP_001643386.1| hypothetical protein Kpol_479p16 [Vanderwaltozyma polyspora DSM
70294]
gi|156113994|gb|EDO15528.1| hypothetical protein Kpol_479p16 [Vanderwaltozyma polyspora DSM
70294]
Length = 504
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 130/476 (27%), Positives = 213/476 (44%), Gaps = 99/476 (20%)
Query: 25 KLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQ 84
KLYE+P C AI R LP LAK ++ M++ D I + ++ WV + + +I +
Sbjct: 24 KLYESPATCLAIYRLLPQLAKFFIMSMVFNDNEISLRDLDRWVKASAKVQFQESIKCMKS 83
Query: 85 LRLFSEEKKKETT-YRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAIG 143
L L K+ + LN TF+ +L+ L G + L T L++Y+
Sbjct: 84 LNLLIPGKEPGSIMVNLNPTFRKSLRNALSGGEINNSFGIVVDSDNDLVTRAMLDSYSAD 143
Query: 144 QWECFLLQLISSAQAERPTNF---------------SSSMMKVFQRGL--LIQSI-LRSL 185
+WE L ++ + P++ S+ K+ G L+Q + L+
Sbjct: 144 KWETILHFMVGTPLVSIPSDNVLNLLKHSKLMEEVESTGEFKITNEGFQFLLQEVNLQIW 203
Query: 186 KFLCQ----------------------GILE---AYNLNTLSEIQRSMIKDFADLGLVKL 220
L Q G LE AY+ LS Q++M+KD D GL+
Sbjct: 204 TLLLQYLKMAETFRMNPVDVLHFIFMLGALEFGKAYSTEELSATQKTMMKDMRDYGLI-F 262
Query: 221 QQGRKESWFIPTKLATNLSM------------------------SLTDSSAR-------- 248
Q+ + F PT+LAT L+ T SA
Sbjct: 263 QKNSNTNVFYPTRLATMLTSDSRTVRNASSAMDSVLTQSKDEPSGATSGSADVDEQVGTQ 322
Query: 249 ----KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 304
++G +VVETNF++Y+YS S L IL LF ++ + N++ G IT+ES+ NA NG
Sbjct: 323 GQNIQDGALVVETNFKLYSYSNSPLQIAILSLFVHLKTRFSNMVTGQITRESIRNALSNG 382
Query: 305 ITAEQIISFLQQNAHP---RVADR---------------IPSVPENVCDQIRLWESDLNR 346
ITAEQII++L+ +AHP R+A+ + +P V DQI+LW+ +L+R
Sbjct: 383 ITAEQIIAYLETHAHPQMRRLAEERLKKKLELDQNSKETLQILPPTVVDQIKLWQLELDR 442
Query: 347 VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+ Y +F ++ ++ YA+D L+W+D +K + V+ E + + ++ +
Sbjct: 443 IISYEGSLYSDFDNKQEYDMLYSYAQDIGVLIWKDDRKRKFFVSKESNSQVLDYAK 498
>gi|256086358|ref|XP_002579367.1| tfiih polypeptide [Schistosoma mansoni]
Length = 486
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 129/468 (27%), Positives = 209/468 (44%), Gaps = 95/468 (20%)
Query: 23 LNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRL 82
L++LY +P C + R LP LAK +V ++L+I+ IP + WV + L
Sbjct: 21 LDELYTHPPTCLVVFRELPELAKHFVMRLLFIEQPIPKSIVSGWVEKGSIALLNDSCKAL 80
Query: 83 VQLRLF--SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARL-----PTLE 135
LR++ ++ ++ LN +Q +++ L GG +P+ + +++
Sbjct: 81 TDLRIWHSTDSNVSRGSWSLNKRYQESIRISLFGGG----KPLLGDLGVVTNDKYSKSVD 136
Query: 136 DLEAYAIGQWECFLLQLISSAQAE-----RPTNFSSSMMKV------------------- 171
L++YA +W+ L ++ S AE + S++MK
Sbjct: 137 FLKSYAAERWDAILHFMVGSESAEVGSVVKDVLLLSNLMKCEGNDCPIGITKHGFHFLLM 196
Query: 172 ---FQRGLLIQSILRSLK-----------------FLCQGILEAYNLNTLSEIQRSMIKD 211
FQ + I LK FLC ++Y + LS Q+ +++
Sbjct: 197 SRQFQVLVFILHYFDYLKENSKNLVGALQFVFQLSFLCP--TKSYPVEALSTAQQEVLQH 254
Query: 212 FADLGLVKLQQGRKESWFIPTKLA--------------------------TNLSMS---- 241
+LGL Q+ R F T LA T +S S
Sbjct: 255 MRELGLA-YQRKRTAPRFYVTPLALDFAGGHTTFLESKSGGWGPQSGVIPTGVSKSDPTD 313
Query: 242 -------LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 294
++ S++ G++++ETNFR+YAY+ S L +L LFSKI + PNL+V IT+
Sbjct: 314 SNKMFSQISVSNSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITR 373
Query: 295 ESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHY 354
+S+ A GITA QI+SFL NAHP + + P +P + DQIRLWE + +R
Sbjct: 374 DSVREALIRGITANQILSFLTANAHPDMLLQNPILPPTLTDQIRLWELERDRFLFQEGCL 433
Query: 355 YEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
YE+F FE DYA+ LLWE+ ++ +VV+ H +R+F +
Sbjct: 434 YEQFSRNTDFEMVRDYAKSIGVLLWENPERRLMVVSKAGHEDVRKFWK 481
>gi|50291141|ref|XP_448003.1| hypothetical protein [Candida glabrata CBS 138]
gi|62901305|sp|Q6FP41.1|TFB2_CANGA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|49527314|emb|CAG60954.1| unnamed protein product [Candida glabrata]
Length = 504
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 129/481 (26%), Positives = 217/481 (45%), Gaps = 111/481 (23%)
Query: 25 KLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQ 84
+LY++P C AI R LP LAK ++ +++ D I + ++ WV +G + + AI +
Sbjct: 24 RLYKSPATCLAIYRLLPTLAKFFIMTVIFNDKDISLRDLDRWVKSNGKLQFQEAIKSMKS 83
Query: 85 LRLFSEEK-KKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITA---RLPTLEDL--- 137
L L + + LN TF+ + + L GG + GI RL T+ +L
Sbjct: 84 LHLLIPTRVNGQLLINLNPTFRESFRNAL-TGGEVNNS---FGIVVDEDRLDTVVNLAVL 139
Query: 138 EAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRS---------LKFL 188
+ YA +WE L ++ + A+ P S +++ + + L++ + S +FL
Sbjct: 140 DEYAATKWETILHFMVGTPMAKMP---SENVLNLLKHSKLMEEVPDSSEFMITNEGFQFL 196
Query: 189 CQ----------------------------------GILE---AYNLNTLSEIQRSMIKD 211
Q G LE AY+ LSE Q M+ D
Sbjct: 197 LQEVNSQIWSLLLQYLKLAESLHMDPVHVLNFIFMLGALETGKAYSTENLSETQLKMLLD 256
Query: 212 FADLGLVKLQQGRKESWFIPTKLATNLS----------------MSLTDSSAR------- 248
D GLV Q+ + F PT+LA L+ ++ D +A+
Sbjct: 257 MRDYGLV-FQKTSNPNIFYPTRLAQMLTSDTKSMRTASGAMESVLNKPDDAAKSTDDKYD 315
Query: 249 ---------KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 299
++G +++ETNF++Y+Y S L IL LF ++ + N++ G IT+ES+
Sbjct: 316 SLEGKAEDIQDGALIIETNFKLYSYCNSPLQIAILSLFVHLKSRFANMVAGQITRESIRR 375
Query: 300 AFENGITAEQIISFLQQNAHPRV------------------ADRIPSVPENVCDQIRLWE 341
A NGITA+Q+I++L+ +AHP++ D + +P V DQI+LW+
Sbjct: 376 ALINGITADQVIAYLESHAHPQMRRLAEEKLQKKLELDPNCKDPLQVLPPTVVDQIKLWQ 435
Query: 342 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 401
+L+RV Y +F + F C YA+D LLW+D +K +L V+ E + + E+
Sbjct: 436 LELDRVLTYEGSLYIDFDTAQDFNMLCKYAQDIGALLWKDDRKRKLFVSREGNAQVLEYA 495
Query: 402 R 402
+
Sbjct: 496 K 496
>gi|327298217|ref|XP_003233802.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
Tfb2 [Trichophyton rubrum CBS 118892]
gi|326463980|gb|EGD89433.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
Tfb2 [Trichophyton rubrum CBS 118892]
Length = 484
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 129/464 (27%), Positives = 208/464 (44%), Gaps = 90/464 (19%)
Query: 25 KLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
KLY+ P AI R LP LAK +V +LY+ +PA +E WV D + ++ L
Sbjct: 22 KLYQQPSTALAIFRRMLPHLAKCFVMALLYLKDPLPATELELWVRSDSRRERDNSLSILG 81
Query: 84 QLRLFSEEKKKE--TTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLP-TLEDLEAY 140
+L + S Y + F ++L++ L+ + S + P ++ DL+ Y
Sbjct: 82 RLHILSSTTTSNHVRAYMVTEPFSTSLRQALMGEDQQGSFGVISVTPDKYPVSVADLDEY 141
Query: 141 AIGQWECFLLQLI--SSAQAERPT-NFSSSMMKVFQRGLLIQSILRSLKFLCQGIL---- 193
A QWE L ++ SS R T S + ++ Q L++ R ++ +G
Sbjct: 142 ARQQWEAVLGYMVGMSSLSGGRETITLSKGVKQLLQACHLVEIRDRRVEITKEGFAFVLQ 201
Query: 194 ----------------------------------------EAYNLNTLSEIQRSMIKDFA 213
++Y L+ Q + D
Sbjct: 202 DVNTQVWHILILYVENAEAIGMESVEVLSFIFLLSSLELGQSYEKKDLTPTQLRTLADLT 261
Query: 214 DLGLV-KLQQGRKESWFIPTKLATNLSMSLTDSSARK----------------------- 249
D G+V + + F PT+LAT L+ +DS A
Sbjct: 262 DFGIVYQHTPASGSTRFYPTRLATTLT---SDSLAMSGPISGEPTVPTTSAGTTTSGDAG 318
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
GF++VETN+R+YAY++S L ++ LF+ ++++ PNLI G IT++S+ A E GITA+Q
Sbjct: 319 TGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQSVRRAIEMGITADQ 378
Query: 310 IISFLQQNAHPRVADRIPS--------VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR 361
IIS+L +AHP++ S +P V DQIRLW+ + +R++ T ++EF +
Sbjct: 379 IISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQLERDRIKATSGFLFKEFDTF 438
Query: 362 DVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQ 404
FEA C YA + L+W+ DS++M V H + FLR +
Sbjct: 439 AEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HEQVAAFLRSR 479
>gi|308452336|ref|XP_003089005.1| hypothetical protein CRE_21072 [Caenorhabditis remanei]
gi|308243592|gb|EFO87544.1| hypothetical protein CRE_21072 [Caenorhabditis remanei]
Length = 468
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 127/453 (28%), Positives = 230/453 (50%), Gaps = 78/453 (17%)
Query: 11 FMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
F+D + S+ ++ ++ + P I R LPP+A++ Q+++ G+ P D
Sbjct: 23 FLDFLISVPPKERQRMLQKPSFF--IYRMLPPIAQQVTIQLIW-KGSFPK--------AD 71
Query: 71 GFTKHKVAIDRLVQLRLFSE----EKKKETTYRLNSTFQ-SNLQKHLINGGALPREPMPS 125
K D Q++L + K+ Y +++ ++ S + ++ ++ + +
Sbjct: 72 DLEVTKSIED---QVKLLEDLGIVSKQANGKYLIDNDYKRSYMYAAMLGAASISSLVLET 128
Query: 126 GITARLPTLEDLEAYAIGQWECFLLQLI------SSAQAE------RPTNFSSSMMKV-- 171
R +++E A+ +W+C L L + A +E + NF+S ++
Sbjct: 129 NDEKRRG--KEVEKKAVERWDCILRYLALPSEENTQAVSETTRNLFKKANFTSGDSRIEI 186
Query: 172 ----FQRGLLI--------------------QSILRSLKFLCQGIL----------EAYN 197
FQ LL Q I+ ++ L Q +L E Y
Sbjct: 187 TTSGFQFLLLSPVKQMWTYVIEYLKLEMSQGQDIVEVIEPLIQIVLLANRGFKAEKECYQ 246
Query: 198 LN-TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT--DSSARK--EGF 252
++ + S Q+ ++ +LG++ +++ RK+ F T L T+L+ + T D+SA + G
Sbjct: 247 IDPSWSIPQQELLNHLRELGVIFIRK-RKDGVFFLTHLLTHLATNETIDDTSAERVSNGK 305
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
V+VETNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA QIIS
Sbjct: 306 VIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIIS 365
Query: 313 FLQQNAHPR---VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 369
FL+ NAHP+ + I +P V DQIRLWE + R+++ A+ Y F S D F+ CD
Sbjct: 366 FLRANAHPQCIATSGAINCLPITVADQIRLWEDERRRMDLKDAYIYSHFESEDEFQGVCD 425
Query: 370 YARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
YA++R LLW ++++ ++VN E H ++R++ +
Sbjct: 426 YAQERGILLWANAQQKLVIVNEEGHEYVRQWYK 458
>gi|403180193|ref|XP_003338499.2| hypothetical protein PGTG_19983 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166015|gb|EFP94080.2| hypothetical protein PGTG_19983 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 679
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 138/236 (58%), Gaps = 13/236 (5%)
Query: 175 GLLIQSILRSLKFLCQGILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIP 231
GL + +L L L G LE Y+ + + Q +++D D GLV + + F P
Sbjct: 68 GLDVVDVLACLFML--GSLELGQEYSFSNWTPTQTQVLQDLVDYGLVLVSAPDR---FYP 122
Query: 232 TKLATNLSMSL-----TDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPN 286
T+LAT L+ + + + + GF+V+ETN+R+YAY+++ L +L LF + Y+ PN
Sbjct: 123 TRLATTLTSTAPPLVSAERAQEEHGFLVLETNYRIYAYTSNPLQIAVLNLFLSLRYRFPN 182
Query: 287 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNR 346
L+VGA+T+ES+ +A NGITA+Q+I +L +AHP++ P +P V DQIRLWE + NR
Sbjct: 183 LVVGAVTRESIKSALSNGITADQVIMYLHTHAHPQMRKLEPLLPPTVVDQIRLWELEKNR 242
Query: 347 VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+ + YE+F S +++ Y+R +LWE + +L V + H+ +REF R
Sbjct: 243 IRAQEGYLYEDFKSAAEYDSVIQYSRKLGIVLWEHAGLRKLFVGYDGHLTLREFFR 298
>gi|410082501|ref|XP_003958829.1| hypothetical protein KAFR_0H02850 [Kazachstania africana CBS 2517]
gi|372465418|emb|CCF59694.1| hypothetical protein KAFR_0H02850 [Kazachstania africana CBS 2517]
Length = 514
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 128/490 (26%), Positives = 217/490 (44%), Gaps = 118/490 (24%)
Query: 25 KLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQ 84
+LYE+P C AI R LP L+K +V M++ + + + ++ WV +G + + AI +
Sbjct: 24 RLYESPATCLAIYRLLPQLSKFFVMAMVFNENDVSLRDLDRWVKTNGKLQFQEAIKSMKS 83
Query: 85 LRLFSEEKKKET-TYRLNSTFQSNLQKHLINGG-------ALPREPMPSGITARLPTLED 136
L L K T LN TF+ + + L G + E S IT L
Sbjct: 84 LHLIIPSKGNGTLMISLNPTFKESFRNALTGGEINNSFGIVVDNEAEQSRIT-----LNF 138
Query: 137 LEAYAIGQWECFLLQLISSAQAERPTNF---------------SSSMMKVFQRG------ 175
L+ Y+ +WE L ++ + A P++ + +K+ G
Sbjct: 139 LDEYSANKWETILHFMVGTPLANIPSHNVLNLLKNSRLMEEADKTGTLKITNEGFQFLLQ 198
Query: 176 --------LLIQSILRS----------LKFLCQ-GILE---AYNLNTLSEIQRSMIKDFA 213
LL+Q + S L F+ G LE AY+++ L+E Q++M++DF
Sbjct: 199 EINSQIWTLLLQYLKMSESLQMDPVEVLNFIFMLGALEIGKAYSIDGLTETQKTMLRDFR 258
Query: 214 DLGLVKLQQGRKESWFIPTKLATNLSM-------------------------------SL 242
D G++ Q+ F PT LA L+ ++
Sbjct: 259 DYGII-FQKNLTSKSFYPTNLAIMLTSDTRSILRTASGAMDSVLRQNKEDSKKQTSGDNV 317
Query: 243 TDSSAR------------KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG 290
T+ +A ++G +++ETNF++Y+YS S L IL LF ++ + N++ G
Sbjct: 318 TEDTANDIEQIGLENQEGRDGSLIIETNFKLYSYSNSPLQIAILSLFVHLKSRFVNMVTG 377
Query: 291 AITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRIPSVPEN 332
IT+ES+ A NGITA+QII++L+ +AHPR+ D + +P
Sbjct: 378 QITRESIRRALVNGITADQIIAYLETHAHPRMRRLAEEKLEKKLELDPNSKDTLQILPPT 437
Query: 333 VCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAE 392
V DQI+LW+ +L+RV Y +F + + YA+D L+W+D KK + V+ E
Sbjct: 438 VVDQIKLWQLELDRVITYDGSLYSDFENSTEYNMLSKYAQDIGVLIWKDDKKRKFFVSKE 497
Query: 393 IHMHMREFLR 402
+ + ++ +
Sbjct: 498 GNTQVLDYAK 507
>gi|349581695|dbj|GAA26852.1| K7_Tfb2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 513
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 133/487 (27%), Positives = 219/487 (44%), Gaps = 111/487 (22%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
N+LY +P C AI R LPPLAK ++ M++ + +P +++WV +G + + AI +
Sbjct: 23 NRLYTSPATCLAIYRILPPLAKFFIMAMVFNENEVPLLDLDKWVNSNGKLQFQNAIKSMK 82
Query: 84 QLRLFSEEKKKET-TYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAI 142
L L K T LN TF+ +L+ L G + + + +L+ L+ Y+
Sbjct: 83 SLHLLIPNKSSGTLMINLNPTFKISLRNALTGGEV--QNSFGVVVEENVVSLDLLDEYSA 140
Query: 143 GQWECFLLQLISSAQAERPTN---------------FSSSMMKVFQRGL--LIQSI---- 181
+WE L ++ + A+ P+ S+ K+ G L+Q I
Sbjct: 141 NKWETILHFMVGTPLAKIPSEKVLNLLKHSKLMEEVNSTGEFKITNEGFQFLLQEINSQL 200
Query: 182 ----LRSLKFL---------------CQGILE---AYNLNTLSEIQRSMIKDFADLGLVK 219
L+ LK + G LE AY ++ LS+ QR M++D D GLV
Sbjct: 201 WTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDALSQTQRIMLQDMRDYGLV- 259
Query: 220 LQQGRKESWFIPTKLATNLSM---------SLTDSSARK--------------------- 249
Q+ +S F PTKLA L+ + DS R+
Sbjct: 260 FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMDSVLRQNREEPSVNEDGANGKSTTDIT 319
Query: 250 ----------------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 293
+G ++VETNF++Y+YS S L +L LF ++ + N+++G IT
Sbjct: 320 TSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQIT 379
Query: 294 KESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRIPSVPENVCD 335
+ES+ A NGITA+QII++L+ +AHP++ + + +P V D
Sbjct: 380 RESIRRALTNGITADQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVD 439
Query: 336 QIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHM 395
QIRLW+ +L+RV Y +F + + YA+D LLW+D KK + ++ E +
Sbjct: 440 QIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNS 499
Query: 396 HMREFLR 402
+ +F +
Sbjct: 500 QVLDFAK 506
>gi|353231086|emb|CCD77504.1| putative tfiih, polypeptide [Schistosoma mansoni]
Length = 486
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 129/468 (27%), Positives = 209/468 (44%), Gaps = 95/468 (20%)
Query: 23 LNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRL 82
L++LY +P C + R LP LAK +V ++L+I+ IP + WV + L
Sbjct: 21 LDELYTHPPTCLVVFRELPELAKHFVMRLLFIEQPIPKSIVSGWVEKGSSALLNDSCKAL 80
Query: 83 VQLRLF--SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARL-----PTLE 135
LR++ ++ ++ LN +Q +++ L GG +P+ + +++
Sbjct: 81 TDLRIWHSTDSNVSRGSWSLNKRYQESIRISLFGGG----KPLLGDLGVVTNDKYSKSVD 136
Query: 136 DLEAYAIGQWECFLLQLISSAQAE-----RPTNFSSSMMKV------------------- 171
L++YA +W+ L ++ S AE + S++MK
Sbjct: 137 FLKSYAAERWDAILHFMVGSESAEVGSVVKDVLLLSNLMKCEGNDCPIGITKHGFHFLLM 196
Query: 172 ---FQRGLLIQSILRSLK-----------------FLCQGILEAYNLNTLSEIQRSMIKD 211
FQ + I LK FLC ++Y + LS Q+ +++
Sbjct: 197 SRQFQVLVFILHYFDYLKENSKNLVGALQFVFQLSFLCP--TKSYPVEALSTAQQEVLQH 254
Query: 212 FADLGLVKLQQGRKESWFIPTKLA--------------------------TNLSMS---- 241
+LGL Q+ R F T LA T +S S
Sbjct: 255 MRELGLA-YQRKRTAPRFYVTPLALDFAGGHTTFLESKSGGWGPQSGVIPTGVSKSDPTD 313
Query: 242 -------LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 294
++ S++ G++++ETNFR+YAY+ S L +L LFSKI + PNL+V IT+
Sbjct: 314 SNKMFSQISVSNSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITR 373
Query: 295 ESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHY 354
+S+ A GITA QI+SFL NAHP + + P +P + DQIRLWE + +R
Sbjct: 374 DSVREALIRGITANQILSFLTANAHPDMLLQNPILPPTLTDQIRLWELERDRFLFQEGCL 433
Query: 355 YEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
YE+F FE DYA+ LLWE+ ++ +VV+ H +R+F +
Sbjct: 434 YEQFSRNTDFEMVRDYAKSIGVLLWENPERRLMVVSKAGHEDVRKFWK 481
>gi|344229873|gb|EGV61758.1| transcription factor Tfb2 [Candida tenuis ATCC 10573]
Length = 498
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 128/483 (26%), Positives = 217/483 (44%), Gaps = 111/483 (22%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDG 71
++ + SL ++LY P C +I R LPP+AK ++ ML+ + + K +E+W P+
Sbjct: 12 INHLESLDDNTQSRLYAAPATCLSIYRLLPPMAKFHIMSMLFYEKNVAIKDLEKWSKPNT 71
Query: 72 FTKHKVAIDRLVQLRL--FSEEKKKETTYRLNSTFQSNLQKHLINGGALPRE--PMPSGI 127
+++R+ L L SE K RL+ F+ N L G P + + +
Sbjct: 72 RHLQIESLERMRSLHLVQLSESGKY---IRLHPIFKKNFADCL-TGNQAPDAFGNLDTTV 127
Query: 128 TARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQS------- 180
L+ L+ +A +WE L ++ + + P S S++++ + G L++
Sbjct: 128 EKHTVDLKFLDTFASTKWETILHYMVGTELSSTP---SRSVLRLLKSGGLMEGNSDYAQE 184
Query: 181 ---ILRSLKFLCQ----------------------------------GILE---AYNLNT 200
+ +FL Q G LE +Y+++
Sbjct: 185 LKITNKGFQFLLQDINAQIWTLLLQYLDLTLELQMDAVDVLNFIFLLGSLELGKSYSVSA 244
Query: 201 LSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----------SMSL-------- 242
LS+ Q M+ D D GLV Q+ + F PT+LAT L SM++
Sbjct: 245 LSDTQIEMLSDLRDFGLV-YQRSATSNKFYPTRLATTLTSDSNSLQTPSMAIDKANSGID 303
Query: 243 -TDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 301
TDS R+E +++ETNF++Y+Y+ S L IL LF + + N++ G IT+ES+ NA
Sbjct: 304 STDSKQRQES-IIIETNFKVYSYTQSPLEIAILNLFVHLRTRFANMVTGQITRESIRNAL 362
Query: 302 ENGITAEQIISFLQQNAHPRVA--------------------------------DRIPSV 329
NGITA Q+I FL+ +AHP++ ++ +
Sbjct: 363 YNGITAGQVIKFLETHAHPQMKMLAQEKLDKKIEFDASNNINTATGKSTDAPMQHKLEIL 422
Query: 330 PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVV 389
P NV DQI+LW+ +L+R++ + + EF ++ +E+ +YA + L+W D KK V
Sbjct: 423 PPNVVDQIKLWQLELDRIQTFDGYLFREFNNQIDYESLRNYASEIGVLVWSDDKKRTCFV 482
Query: 390 NAE 392
E
Sbjct: 483 TKE 485
>gi|453232316|ref|NP_001263824.1| Protein Y73F8A.24, isoform c [Caenorhabditis elegans]
gi|412976517|emb|CCO25636.1| Protein Y73F8A.24, isoform c [Caenorhabditis elegans]
Length = 485
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 132/463 (28%), Positives = 227/463 (49%), Gaps = 90/463 (19%)
Query: 11 FMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA-------KTM 63
F+D + ++ + +L + P I R LPP+A++ Q+++ G+ P K +
Sbjct: 23 FLDFLITIPPKTRQRLLQKPSCAFFIYRMLPPIAQQTTIQLIW-KGSFPTASDVEETKEI 81
Query: 64 EEWV--LPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGAL-PR 120
E+ V L D H+ D + + +T Y+ + + + L I+ L P
Sbjct: 82 EDQVKLLKDLGLVHRQTTDGKLNI---------DTDYKRSYMYAAMLGAAQISSLVLEPN 132
Query: 121 EPMPSGITARLPTLEDLEAYAIGQWECFL--LQLISSAQAE----------RPTNFSS-- 166
E G +D+E A+ +W+C L L L S + + NF+S
Sbjct: 133 EGNRRG--------KDVEKKAVERWDCILRYLALPSEENTQAVSETTRNLFKKANFTSGG 184
Query: 167 -SMMKVFQRG---LLI---------------------QSILRSLKFLCQGIL-------- 193
+ +++ G LL+ Q I+ ++ L Q +L
Sbjct: 185 DTQIEITTFGFQFLLLSPVKQMWTYVIEYLKLEMSQGQDIVEVIEPLIQIVLLANRVQVA 244
Query: 194 ------EAYNLNT-LSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT--D 244
E Y ++ +E Q ++ +LG++ +++ RK+ F T+L T+L+ + T D
Sbjct: 245 GFKAERECYQIDANWTEPQNELLNHLRELGVIFIRK-RKDGVFFLTQLLTHLATNETIDD 303
Query: 245 SSARK--EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFE 302
SA K G V+VETNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A +
Sbjct: 304 VSAEKVSNGKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQ 363
Query: 303 NGITAEQIISFLQQNAHPR---VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFP 359
+GITA QIISFL+ NAHP+ + + +P V DQIRLWE + R+ + A+ Y F
Sbjct: 364 HGITAAQIISFLRANAHPQCIATSGPVNCLPITVADQIRLWEDERRRMNLKDAYIYSHFE 423
Query: 360 SRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
S D F C+YAR ++ LLW D+++ ++VN + H +R++ +
Sbjct: 424 SEDEFHGVCEYARQQNILLWSDNQQKLVIVNEDGHELVRQWYK 466
>gi|365986883|ref|XP_003670273.1| hypothetical protein NDAI_0E02130 [Naumovozyma dairenensis CBS 421]
gi|343769043|emb|CCD25030.1| hypothetical protein NDAI_0E02130 [Naumovozyma dairenensis CBS 421]
Length = 522
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 130/499 (26%), Positives = 210/499 (42%), Gaps = 130/499 (26%)
Query: 25 KLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQ 84
+LYE+P C AI R LP L+K +V M++ + + + ++ WV PD + + AI +
Sbjct: 24 RLYESPATCLAIYRLLPQLSKFFVMSMVFNNNEVSLRDLDRWVKPDAKLQFQDAIKSMKS 83
Query: 85 LRLF--SEEKKKETTYRLNSTFQSNLQKHLING------GALPREPMPSGITARLPTLED 136
L L S+ LN TF+ + + L G G + E +T+ L
Sbjct: 84 LHLIIPSKGNGGPLMIILNPTFRESFKNALTGGQINNSFGIISDEDENGVVTSTL----- 138
Query: 137 LEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRS---------LKF 187
L Y+ +WE L ++ + + P S S++ + + L++ + + +F
Sbjct: 139 LNEYSANKWETILHFMVGTPMSSIP---SGSVLNLLKHTKLMEEVENTGEFKITNEGFQF 195
Query: 188 LCQ----------------------------------GILE---AYNLNTLSEIQRSMIK 210
L Q G LE Y+++ LSE Q+ M+K
Sbjct: 196 LLQELNSQLWTLLLQYLKLSETLNMDPVDVLNFIFMLGALEVGKGYSIDGLSETQKIMLK 255
Query: 211 DFADLGLVKLQQGRKESWFIPTKLATNLS------------------------------- 239
D D GLV Q+ F PT LA L+
Sbjct: 256 DMRDYGLV-FQKVSNSKTFYPTNLALMLTSDTKSIVRTASGAIESVLNENRSGSNANENG 314
Query: 240 -------------MSLTDSSARK-----EGFVVVETNFRMYAYSTSKLHCEILRLFSKIE 281
M D K +G ++VETNF++Y+YS S L IL LF ++
Sbjct: 315 YEPGTKKKNENTIMGTIDQVGMKNQDVPDGSLIVETNFKLYSYSNSPLQIAILSLFVHLK 374
Query: 282 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------A 323
++ N++ G IT+ES+ A NGITAEQII++L+ +AHP++
Sbjct: 375 FRFVNMVTGQITRESIRRALINGITAEQIIAYLETHAHPQMRRLAEEKLEKKLELDANCK 434
Query: 324 DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSK 383
D + +P V DQIRLW+ +L+RV Y +F + + YA+D LLW+D K
Sbjct: 435 DSLQILPPTVVDQIRLWQLELDRVIAYEGSLYSDFENNTEYTTLYKYAQDIGVLLWKDDK 494
Query: 384 KMRLVVNAEIHMHMREFLR 402
K + V+ E + + ++ +
Sbjct: 495 KRKFFVSKEGNSQVLDYAK 513
>gi|326483225|gb|EGE07235.1| transcription factor Tfb2 [Trichophyton equinum CBS 127.97]
Length = 484
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 129/464 (27%), Positives = 208/464 (44%), Gaps = 90/464 (19%)
Query: 25 KLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
KLY+ P AI R LP LAK +V +LY+ +PA +E WV D + ++ L
Sbjct: 22 KLYQQPSTALAIFRRMLPHLAKCFVMALLYLKDPLPATELELWVRSDSRRERDNSLSILG 81
Query: 84 QLRLFSEEKKKE--TTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLP-TLEDLEAY 140
+L + S Y + F ++L++ L+ + S + P ++ DL+ Y
Sbjct: 82 RLHILSSTTTSNHVRAYMVTEPFSTSLRQALMGEDQQGSFGVISVTPDKYPVSVADLDEY 141
Query: 141 AIGQWECFLLQLI--SSAQAERPT-NFSSSMMKVFQRGLLIQSILRSLKFLCQG------ 191
A QWE L ++ SS R T S + ++ Q L++ R ++ +G
Sbjct: 142 ARQQWEAVLGYMVGMSSLSGGRETITLSKGVKQLLQACHLVEIRDRRVEITKEGFAFVLQ 201
Query: 192 --------------------------------------ILEAYNLNTLSEIQRSMIKDFA 213
+ ++Y L+ Q + D
Sbjct: 202 DVNTQVWHILILYVENAEAIGMESVEVLSFIFLLSSLELGQSYEKKDLTPTQLRTLADLT 261
Query: 214 DLGLV-KLQQGRKESWFIPTKLATNLSMSLTDSSARK----------------------- 249
D G+V + + F PT+LAT L+ +DS A
Sbjct: 262 DFGIVYQHTPASGSARFYPTRLATTLT---SDSLAMSGPISGEPAVPTTTSGTTTSGDAG 318
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
GF++VETN R+YAY++S L ++ LF+ ++++ PNLI G IT++S+ A E GITA+Q
Sbjct: 319 TGFIIVETNHRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQSVRRAIEMGITADQ 378
Query: 310 IISFLQQNAHPRVADRIPS--------VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR 361
IIS+L +AHP++ S +P V DQIRLW+ + +R++ T ++EF +
Sbjct: 379 IISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQLERDRIKATSGFLFKEFDTF 438
Query: 362 DVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQ 404
FEA C YA + L+W+ DS++M V H + FLR +
Sbjct: 439 AEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HEQVAAFLRSR 479
>gi|255936123|ref|XP_002559088.1| Pc13g06540 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583708|emb|CAP91723.1| Pc13g06540 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 483
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 128/482 (26%), Positives = 220/482 (45%), Gaps = 101/482 (20%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRSLPP----LAKKYVFQMLYIDGAIPAKTMEEWV 67
++ + L KLY+ P AI R + P +AK +V +LY+ +P +E WV
Sbjct: 9 LEYLEGLPGTTFYKLYQQPSTALAIFRRMLPDLVNVAKCFVMALLYLKDPLPTADLEVWV 68
Query: 68 LPDGFTKHKVAIDRLVQLRLFSEEKKKETT--YRLNSTFQSNLQKHLING------GALP 119
+ + A+ L +L + S + Y + + F ++L++ L G
Sbjct: 69 NSESKKERDNALSILGRLHILSTTLTGDNVRAYMITNPFAASLRQALTGAEDSHSFGVFS 128
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLI--SSAQAERP-TNFSSSMMKVFQRGL 176
+ P + L ++ DL+ YA QWE + ++ S+ +R N S + ++ Q G
Sbjct: 129 QAPEHT-----LTSITDLDEYARRQWEGVMGYMVGTSALSGQRDMVNLSKGVKQLLQAGH 183
Query: 177 LIQ------SILR-SLKFLCQGI------------------------------------- 192
L++ I + F+ Q +
Sbjct: 184 LVEIRGNRVDITKDGFGFVLQDVNTQVWHILILYVESAEAIGMDSVEVLSFLFLLSSLEL 243
Query: 193 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA----- 247
+Y+ + ++ Q + D AD G+V Q+ + F PT+LAT L+ +DSSA
Sbjct: 244 GSSYDKSHMTPNQLRTLMDLADFGIV-YQEHADATRFYPTRLATTLT---SDSSALSNPV 299
Query: 248 -------------RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 294
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G IT+
Sbjct: 300 TGSLTGPAGPSGGSGSGFIIIETNYRLYAYTSSPLQISLISLFTNLKYRFPNLVTGKITR 359
Query: 295 ESLYNAFENGITAEQIISFLQQNAHPRV---------ADRIPS--VPENVCDQIRLWESD 343
+S+ A E GITA+QIIS+L +AHP++ +P+ +P V DQIRLW+ +
Sbjct: 360 QSVRRAIEMGITADQIISYLLSHAHPQLRKHSAAQPNGKGVPASVLPPTVTDQIRLWQLE 419
Query: 344 LNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLR 402
+R+ T +++F S ++A C YA + L+W+ D K+M V H + FLR
Sbjct: 420 RDRLRATAGFLFKDFTSLAEYQAPCQYAAEIGVLVWKSDRKRMFFVTR---HEQVAAFLR 476
Query: 403 GQ 404
Q
Sbjct: 477 SQ 478
>gi|241958748|ref|XP_002422093.1| TFIIH subunit, putative; tanscription initiation factor IIB,
putative [Candida dubliniensis CD36]
gi|223645438|emb|CAX40094.1| TFIIH subunit, putative [Candida dubliniensis CD36]
Length = 494
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/455 (26%), Positives = 205/455 (45%), Gaps = 106/455 (23%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
+KLYE P C +I R L P+AK Y+ M++ + I + +++W P A+ RL
Sbjct: 23 SKLYEAPATCLSIFRLLSPMAKFYIMSMIFNEKPIALRDLDKWCKPSARKLEFEALKRLE 82
Query: 84 QLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPRE--PMPSGITARLPTLEDLEAYA 141
L L E K + RL+S F+ N + + G P + + + + L+ +A
Sbjct: 83 SLHLI-EYDSKGSHIRLHSIFRKNF-RDCLTGSQNPNAFGSISTTVDKHKVDIPFLDLFA 140
Query: 142 IGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLK-------FLCQ---- 190
+WE L ++ + P S S++ + + G L++ L+ FL Q
Sbjct: 141 SQKWETILHFMVGTESTATP---SDSVLSLLKLGGLMEGPNNDLRITNSGFQFLLQDVNA 197
Query: 191 ------------------------------GILE---AYNLNTLSEIQRSMIKDFADLGL 217
G LE +Y++++LSE Q SM+ D D GL
Sbjct: 198 QIWTLLLQYLNLTQELNMDPVDVLNFIFILGSLELGKSYSVSSLSETQVSMLADLKDYGL 257
Query: 218 VKLQQGRKESWFIPTKLATNLSMSLTDSSARK---------------EGFVVVETNFRMY 262
V Q+ F PT+LAT L+ +DS+A K + +++ETNF++Y
Sbjct: 258 V-YQRSDTSGRFYPTRLATTLT---SDSAALKTPSMAMDEEEQQVVSKESIIIETNFKIY 313
Query: 263 AYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV 322
AY+ S L IL LF + + N++ G IT+ES+ NA NGITA+QII FL+ +AHP++
Sbjct: 314 AYTKSPLEIAILNLFVHFKTRFANMVCGQITRESIRNALYNGITADQIIKFLETHAHPQM 373
Query: 323 ------------------------------------ADRIPSVPENVCDQIRLWESDLNR 346
++ +P NV DQI+LW+ +L+R
Sbjct: 374 RILAKEKLDKKIEFDTSHNINTAGGAPQSKTDGMISQHKLEILPPNVVDQIKLWQLELDR 433
Query: 347 VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWED 381
++ + +++F ++ ++ +YA + L+W D
Sbjct: 434 IQTFDGYLFKDFSNQQEYDILSNYASELGVLIWAD 468
>gi|315041383|ref|XP_003170068.1| TFIIH basal transcription factor complex p52 subunit [Arthroderma
gypseum CBS 118893]
gi|311345102|gb|EFR04305.1| TFIIH basal transcription factor complex p52 subunit [Arthroderma
gypseum CBS 118893]
Length = 484
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 125/461 (27%), Positives = 204/461 (44%), Gaps = 84/461 (18%)
Query: 25 KLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
KLY+ P A+ R LP LAK +V +LY+ +PA +E WV D + ++ L
Sbjct: 22 KLYQQPSTALAVFRRMLPHLAKCFVMALLYLKDPLPATELELWVRSDSRRERDNSLSILG 81
Query: 84 QLRLFSEEKKKE--TTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLP-TLEDLEAY 140
+L + S Y + F ++L++ L+ + S + P ++ DL+ Y
Sbjct: 82 RLHILSSTTSSSHVRAYMVTEPFSTSLRQALMGEDQKGSFGVISVTPDKYPVSVADLDEY 141
Query: 141 AIGQWECFLLQLI--SSAQAERPT-NFSSSMMKVFQRGLLIQSILRSLKFLCQGIL---- 193
A QWE L ++ SS R T S + ++ Q L++ R ++ +G
Sbjct: 142 ARQQWEAVLGYMVGMSSLSGGRETITLSKGVKQLLQACHLVEIRDRRVEITKEGFAFVLQ 201
Query: 194 ----------------------------------------EAYNLNTLSEIQRSMIKDFA 213
++Y L+ Q + D
Sbjct: 202 DVNTQVWHILILYVENAEAIGMESVEVLSFIFLLSSLELGQSYEKKNLTPTQLRTLADLT 261
Query: 214 DLGLV-KLQQGRKESWFIPTKLATNLSMSLTDSSARKEG--------------------F 252
D G+V + + F PT+LAT L+ S G F
Sbjct: 262 DFGIVYQHTPASGSTRFYPTRLATTLTSDSLAMSGPISGEPTVPAAAAGATTAGDAGTGF 321
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
++VETN+R+YAY++S L ++ LF+ ++++ PNLI G IT++S+ A E GITA+QI+S
Sbjct: 322 IIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQSVRRAIEMGITADQIVS 381
Query: 313 FLQQNAHPRVADRIPS--------VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVF 364
+L +AHP++ S +P V DQIRLW+ + +R++ T ++EF + F
Sbjct: 382 YLTTHAHPQMRKTKKSTTNVSSTVLPPTVVDQIRLWQLERDRIKATSGFLFKEFDTFAEF 441
Query: 365 EAACDYARDRSGLLW-EDSKKMRLVVNAEIHMHMREFLRGQ 404
EA C YA + L+W DS++M V H + FLR +
Sbjct: 442 EAPCKYAEEIGVLVWRSDSRRMFFVTR---HEQVAAFLRSR 479
>gi|412992641|emb|CCO18621.1| predicted protein [Bathycoccus prasinos]
Length = 542
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 132/219 (60%), Gaps = 13/219 (5%)
Query: 196 YNLNTLSEIQRSMIKDFADLGLV--KLQQGRKESWFIPTKLATNLSMSLTDSSA-----R 248
Y+ LSE +R + + LG++ +W++PT L+ LS T SSA R
Sbjct: 324 YSKANLSEAERRVASHLSALGVLYENEDDENDNNWYVPTVLSAGLSSVSTTSSAKSALAR 383
Query: 249 KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 308
+G ++VETNFR+YAY+ S+L E+LRLF++ +Y+LPN VG IT++S+ +A GI+ +
Sbjct: 384 IDGHIIVETNFRVYAYTHSELETEVLRLFTRPDYKLPNAYVGMITRDSILDAMRAGISPD 443
Query: 309 QIISFLQQNAHPR--VADR--IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR-DV 363
QI+++LQ AHPR + R P+VP VCDQIRLW DL RV+ Y +FP + +
Sbjct: 444 QIVNYLQTRAHPRCTIGKRPNHPAVPPTVCDQIRLWARDLYRVKADDCVMYTDFPMQGNQ 503
Query: 364 FEAACDYARDRSG-LLWEDSKKMRLVVNAEIHMHMREFL 401
F+ A + AR+ +LW D K R V+A+ H ++ FL
Sbjct: 504 FQDAVNNARNVGAQILWMDENKRRFAVDADSHERLKVFL 542
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 14/79 (17%)
Query: 11 FMDMVASLTARDLNKLYE-NPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLP 69
F++ A L+ +N LY +P+ A+LR+L PLAK+Y+ + +++ AK W L
Sbjct: 22 FVEFFAHLSEEKINHLYTISPWATLAVLRALTPLAKQYIMRCVFLPEG--AKQRTRWRLK 79
Query: 70 DGFTKHKVAIDRLVQLRLF 88
LVQLR F
Sbjct: 80 -----------ALVQLRAF 87
>gi|68490740|ref|XP_710812.1| hypothetical protein CaO19.13268 [Candida albicans SC5314]
gi|68490763|ref|XP_710801.1| hypothetical protein CaO19.5846 [Candida albicans SC5314]
gi|46432046|gb|EAK91553.1| hypothetical protein CaO19.5846 [Candida albicans SC5314]
gi|46432058|gb|EAK91564.1| hypothetical protein CaO19.13268 [Candida albicans SC5314]
gi|238879997|gb|EEQ43635.1| TFIIH basal transcription factor complex subunit 2 [Candida
albicans WO-1]
Length = 494
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 123/453 (27%), Positives = 204/453 (45%), Gaps = 102/453 (22%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
+KLYE P C +I R L P+AK Y+ M++ + I + +++W P A+ RL
Sbjct: 23 SKLYEAPATCLSIFRLLSPMAKFYIMSMIFNEKPIALRDLDKWCKPSARKLEFEALKRLE 82
Query: 84 QLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPRE--PMPSGITARLPTLEDLEAYA 141
L L E K + RL+S F+ N + + G P + + + + L+ +A
Sbjct: 83 SLHLI-EYDSKGSHVRLHSIFRKNF-RDCLTGSQNPNAFGSISTTVDKHKVDIPFLDLFA 140
Query: 142 IGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLK-------FLCQ---- 190
+WE L ++ + P S S++ + + G L++ L+ FL Q
Sbjct: 141 SQKWETILHFMVGTESTATP---SDSVLSLLKLGGLMEGPNNDLRITNSGFQFLLQDVNA 197
Query: 191 ------------------------------GILE---AYNLNTLSEIQRSMIKDFADLGL 217
G LE +Y++ +LSE Q SM+ D D GL
Sbjct: 198 QIWTLLLQYLNLTQELNMDPVDVLNFIFVLGSLELGKSYSVLSLSETQVSMLADLKDYGL 257
Query: 218 VKLQQGRKESWFIPTKLATNL----------SMSLTDSS---ARKEGFVVVETNFRMYAY 264
V Q+ F PT+LAT L SM++ + A KE +++ETNF++YAY
Sbjct: 258 V-YQRSDTSGRFYPTRLATTLTSDSAALKTPSMAMDEEEQQVATKES-IIIETNFKIYAY 315
Query: 265 STSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-- 322
+ S L IL LF + + N++ G IT+ES+ NA NGITA+QII FL+ +AHP++
Sbjct: 316 TKSPLEIAILNLFVHFKTRFANMVCGQITRESIRNALYNGITADQIIKFLETHAHPQMRI 375
Query: 323 ----------------------------------ADRIPSVPENVCDQIRLWESDLNRVE 348
++ +P NV DQI+LW+ +L+R++
Sbjct: 376 LAKEKLDKKIEFDTSHNINTAGGAPQSKTDGMVSQHKLEILPPNVVDQIKLWQLELDRIQ 435
Query: 349 MTPAHYYEEFPSRDVFEAACDYARDRSGLLWED 381
+ +++F ++ ++ +YA + L+W D
Sbjct: 436 TFDGYLFKDFSNQQEYDILSNYASELGVLIWAD 468
>gi|299750117|ref|XP_001836551.2| transcription factor TFIIH complex subunit Tfb2 [Coprinopsis
cinerea okayama7#130]
gi|298408751|gb|EAU85259.2| transcription factor TFIIH complex subunit Tfb2 [Coprinopsis
cinerea okayama7#130]
Length = 403
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 167/321 (52%), Gaps = 52/321 (16%)
Query: 132 PTLEDLEAYAIGQWECFLLQLISSAQAERPTNFS---------SSMMKVFQRGLLIQS-- 180
P++ L+AYA+ +WE L ++SS +RPT S S +M L I S
Sbjct: 76 PSIAALDAYALERWETILHYMVSSGSGQRPTEPSPGVRFLLKTSGLMNEIHDALHISSAG 135
Query: 181 ---------------ILRSLKFLCQGILE------------------AYNLNTLSEIQRS 207
+L+ L+ Q ++ Y++ L++ Q +
Sbjct: 136 FQFLLHSPHEQLWHLLLQYLQLAEQRRMDLVDVLSFFFMLSTMELGREYSVQNLTKTQSA 195
Query: 208 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTD-------SSARKEGFVVVETNFR 260
M++D D GL+ Q+ + F PT+L+T L+ S SS +EGF+++ETN+R
Sbjct: 196 MLEDLRDYGLI-WQRKQTSKRFSPTRLSTTLTSSSPPLPSTSGASSGPQEGFIILETNYR 254
Query: 261 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 320
+YAY+ + L +L LF+ ++Y+ PNL+VG+IT+ES+ A NGI+A+QIIS+L +AHP
Sbjct: 255 IYAYTDNPLQTAVLSLFASLKYRFPNLVVGSITRESVKKALLNGISADQIISYLITHAHP 314
Query: 321 RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE 380
+ P +P V DQIRLWE + NR++ Y F S+ +E YA++ +LWE
Sbjct: 315 NMRKNNPLLPVTVQDQIRLWELEKNRLKSREGFLYTAFASQADYELVLQYAKELDVVLWE 374
Query: 381 DSKKMRLVVNAEIHMHMREFL 401
++ K + E H +++ F+
Sbjct: 375 NASKRCFFGSLEGHANIKGFI 395
>gi|341886092|gb|EGT42027.1| hypothetical protein CAEBREN_00374 [Caenorhabditis brenneri]
Length = 460
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 135/207 (65%), Gaps = 8/207 (3%)
Query: 205 QRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM--SLTDSSARK--EGFVVVETNFR 260
Q+ ++ +LG++ +++ RK+ F T+L T+L+ ++ D+SA K G V+VETNFR
Sbjct: 246 QQELLNHLRELGVIFIRK-RKDGVFFLTQLLTHLATNETIDDTSAEKVSNGKVIVETNFR 304
Query: 261 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 320
+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA QIISFL+ NAHP
Sbjct: 305 VYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISFLRANAHP 364
Query: 321 R---VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGL 377
+ + + +P V DQIRLWE + R+++ ++ Y F S + F CDYA++R L
Sbjct: 365 QCIATSGPVNCLPITVADQIRLWEDERRRMDLKDSYIYSNFESDEEFNGVCDYAKERKIL 424
Query: 378 LWEDSKKMRLVVNAEIHMHMREFLRGQ 404
LW D ++ ++VN E H ++R++ + Q
Sbjct: 425 LWADYQRKLVIVNEEGHEYVRQWYKQQ 451
>gi|268534706|ref|XP_002632484.1| Hypothetical protein CBG13719 [Caenorhabditis briggsae]
Length = 482
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 128/450 (28%), Positives = 218/450 (48%), Gaps = 70/450 (15%)
Query: 11 FMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
F+D + S+ +D ++ + P I R LP +A++ Q+++ G+ P E
Sbjct: 28 FLDFLMSIKPKDRQRMLQKPSCSFFIYRMLPAIAQQVTIQLIW-KGSFPKADDVE----- 81
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKETTYRL---NSTFQSNLQKHLINGGALPREPMPSGI 127
TK +I+ V+L L K T +L N +S + ++ ++ + +
Sbjct: 82 -LTK---SIEEQVELLLKLGIAHKATDGKLTIDNDYKRSYMYAAMLGAASISSLVLETND 137
Query: 128 TARLPTLEDLEAYAIGQWECFL--LQLISSAQAE----------RPTNFSSSMMKV---- 171
R +D+E A+ +W+C L L L S E R NF+S ++
Sbjct: 138 EKRRG--KDVEKKAVERWDCILRYLALPSEENTEAVSDTTKDLFRKANFTSGESRIEITT 195
Query: 172 --FQRGLLI--------------------QSILRSLKFLCQGIL----------EAYNLN 199
FQ LL I+ ++ L Q +L E Y ++
Sbjct: 196 FGFQFLLLSPVKQMWTYVIEYLKLEISKGNDIVEVIEPLIQIVLLANRGFKAEKECYQID 255
Query: 200 -TLSEIQRSMIKDFADLGLVKLQQGRKESWFIP---TKLATNLSMSLTDSSARKEGFVVV 255
++ Q ++ +LG++ +++ + +F+ T LATN ++ T S G V+V
Sbjct: 256 EQWTQPQHDLLNHLRELGVIFIRKRKDGVFFLTHLLTHLATNETIDDTSSEKASNGKVIV 315
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA QIISFL+
Sbjct: 316 ETNFRVYAYTSSLLQLAIIALFTEMTYRFTDMSVGMITRESVRGALQHGITAAQIISFLR 375
Query: 316 QNAHPR-VADRIP--SVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
NAHP+ VA P +P V DQIRLWE + R+++ A+ Y F S D + YA+
Sbjct: 376 ANAHPQCVATSGPVNCLPITVADQIRLWEDERRRMDLKDAYIYSHFESDDEYHGVVRYAQ 435
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+R LLW + ++ ++VN E H +R++ +
Sbjct: 436 ERGILLWANPQQKLVIVNEEGHEAVRQWYK 465
>gi|254584224|ref|XP_002497680.1| ZYRO0F11088p [Zygosaccharomyces rouxii]
gi|238940573|emb|CAR28747.1| ZYRO0F11088p [Zygosaccharomyces rouxii]
Length = 509
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 128/475 (26%), Positives = 210/475 (44%), Gaps = 111/475 (23%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
++LYE+P C AI R LP LAK ++ M++ + AI + ++ WV G + + AI +
Sbjct: 24 SRLYESPATCLAIYRLLPQLAKFFIMSMVFNESAISLRDLDRWVKSSGKLQFQDAIKSMK 83
Query: 84 QLRLFSEEKKKE-TTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLP----TLEDLE 138
L L + LN TF+ + K+ + GG + GI L T + L+
Sbjct: 84 SLHLLIPVRSNGPMLIDLNHTFRESF-KNALTGGEVSNS---FGIVMELDNDTVTTDMLD 139
Query: 139 AYAIGQWECFLLQLISSAQAERPT---------------NFSSSMMKVFQRGL--LIQSI 181
Y+ +WE L ++ ++ A P+ + ++ K+ G L+Q +
Sbjct: 140 KYSADKWETILHFMVGTSLAHIPSENVLNLLKHSKLMEESNTTGEFKITNEGFQFLLQEV 199
Query: 182 --------LRSLKF---------------LCQGILE---AYNLNTLSEIQRSMIKDFADL 215
L+ LK G LE Y+ N LSE Q+ M+KD D
Sbjct: 200 NSQLWALLLQYLKMTEMLQMDPVDILNFIFMLGALEFSKPYSTNGLSETQKVMLKDMRDY 259
Query: 216 GLVKLQQGRKESWFIPTKLATNLS---MSLTDSSAR------------------------ 248
GLV Q + F PT+LA+ L+ S+ +S
Sbjct: 260 GLV-FQMNSNANVFYPTRLASMLTSDPKSIRGASGAMDSVLKQNKEDVLNKSGGAGANAD 318
Query: 249 -------------KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 295
++G ++VETNF++Y+YS S L IL LF ++ + N++ G +T+E
Sbjct: 319 DDADEIGSEGQNMQDGALIVETNFKLYSYSNSPLQIAILSLFVHMKSRFSNMVTGQLTRE 378
Query: 296 SLYNAFENGITAEQIISFLQQNAHPRV------------------ADRIPSVPENVCDQI 337
S+ A NGITA+QII++L+ +AHP++ D + +P V DQI
Sbjct: 379 SIRQALLNGITADQIIAYLETHAHPQMRRMAEEQLEKRLELDPNSKDPLQILPPTVVDQI 438
Query: 338 RLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAE 392
+LW+ +L+R+ Y +F + F YA+D L+W+D +K + V+ E
Sbjct: 439 KLWQLELDRIISFEGSLYSDFENHQEFTLLSSYAQDIGVLIWKDDRKKKFFVSKE 493
>gi|389642093|ref|XP_003718679.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae 70-15]
gi|351641232|gb|EHA49095.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae 70-15]
gi|440469172|gb|ELQ38293.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae Y34]
gi|440481925|gb|ELQ62459.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae P131]
Length = 490
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 123/450 (27%), Positives = 209/450 (46%), Gaps = 91/450 (20%)
Query: 23 LNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDR 81
KLY+ P AI R LPPLAK +V +LY+ +P ++ WV P+ A+
Sbjct: 21 FKKLYQQPATAFAIFRRMLPPLAKTFVMSLLYMPQPLPLTALDSWVKPEAKKNKDQALSI 80
Query: 82 LVQLRLFS----EEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLED- 136
L + + + ++K L F+ +L+ L GG+ +PS + +P D
Sbjct: 81 LRSMHITTITPVTKEKPVQEMSLTPNFKKSLRLALEGGGSHNSFGVPSSLP--IPPQVDV 138
Query: 137 --LEAYAIGQWECFLLQLISSAQ------AERPTNFSSSMMKVFQRGLLIQSIL------ 182
L+ +A +W+ L +++S + + NF S ++ + LL+Q L
Sbjct: 139 AFLDKWARSRWDAILHYVVNSVEETDSMEPSKKYNFGGSKLQDTVKTLLVQGGLVQRRSS 198
Query: 183 -------RSLKFLCQ-----------------------------------GILE---AYN 197
FL Q G LE AY+
Sbjct: 199 ERISITKTGFTFLLQEANAQVWTLLLQWLHSVNEDNTNRAVDMLSFLFMLGTLELGQAYD 258
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL--------SMSLTDSSARK 249
LSE +R+M+ D D GLV + + +F PT+LAT L S+S ++A
Sbjct: 259 TGALSEERRNMLPDLNDFGLVYIPPSNPDQYF-PTRLATTLTSGSSALRSVSSGVAAATA 317
Query: 250 E-------GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFE 302
E G +++ETNFR+YAY+++ L IL LF+ ++ + ++ G +++ S+ A
Sbjct: 318 EAGENNTKGAIILETNFRIYAYTSTPLQIAILALFANLKMRFAGMVTGQLSRHSIKRAIS 377
Query: 303 NGITAEQIISFLQQNAHPRVADRI------PSVPENVCDQIRLWESDLNRVEMTPAHYYE 356
+GITA+QII +L +AH ++ RI P +P V DQIRLW+ + R+++ + ++
Sbjct: 378 HGITADQIIEYLASHAHEQM-HRIAAIRNKPVLPPTVVDQIRLWQLETERMQVQRGYLFK 436
Query: 357 EFPSRDVFEAACDYARDRSGLLW-EDSKKM 385
+F S+ F+A DYA + L+W D++++
Sbjct: 437 DFESQAEFKAIADYADEVGVLIWRSDARQL 466
>gi|453232318|ref|NP_001263825.1| Protein Y73F8A.24, isoform d [Caenorhabditis elegans]
gi|412976516|emb|CCO25635.1| Protein Y73F8A.24, isoform d [Caenorhabditis elegans]
Length = 435
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 145/237 (61%), Gaps = 12/237 (5%)
Query: 177 LIQSILRSLKFLCQGI---LEAYNLNT-LSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 232
LIQ +L + + G E Y ++ +E Q ++ +LG++ +++ RK+ F T
Sbjct: 181 LIQIVLLANRVQVAGFKAERECYQIDANWTEPQNELLNHLRELGVIFIRK-RKDGVFFLT 239
Query: 233 KLATNLSMSLT--DSSARK--EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI 288
+L T+L+ + T D SA K G V+VETNFR+YAY++S L I+ LF+++ Y+ ++
Sbjct: 240 QLLTHLATNETIDDVSAEKVSNGKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMS 299
Query: 289 VGAITKESLYNAFENGITAEQIISFLQQNAHPR---VADRIPSVPENVCDQIRLWESDLN 345
VG IT+ES+ A ++GITA QIISFL+ NAHP+ + + +P V DQIRLWE +
Sbjct: 300 VGMITRESVRGALQHGITAAQIISFLRANAHPQCIATSGPVNCLPITVADQIRLWEDERR 359
Query: 346 RVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
R+ + A+ Y F S D F C+YAR ++ LLW D+++ ++VN + H +R++ +
Sbjct: 360 RMNLKDAYIYSHFESEDEFHGVCEYARQQNILLWSDNQQKLVIVNEDGHELVRQWYK 416
>gi|388581217|gb|EIM21527.1| transcription factor Tfb2 [Wallemia sebi CBS 633.66]
Length = 449
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 125/443 (28%), Positives = 207/443 (46%), Gaps = 68/443 (15%)
Query: 11 FMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
++ + L+ +LN+L+ + I R L L K+ + +L+ + T+E
Sbjct: 5 LVNYLKGLSKFNLNRLFNDKSSTLTIYRLLDDLNKQIISSLLFSSKLLDQSTLE------ 58
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITAR 130
+ L++L + T LN F+ +L++ LI G + E + + IT
Sbjct: 59 -LLYKDADLVPLIELNIIDNSNGSIT---LNEQFKHSLKQILI-GREI--ESLSNSITT- 110
Query: 131 LPTLEDLEAYAIGQWECFLLQLISSAQ-------------------AERPTNFSSSMMKV 171
T+E L+ +A QWE L ++ S A + SS +
Sbjct: 111 --TIEQLDTFATQQWELILHYMVGSYNSTPSKGVLFLLEKSNLIYTANKQHRISSKGFQF 168
Query: 172 FQRGLLIQ-----------------SILRSLKFL-CQGILEA---YNLNTLSEIQRSMIK 210
+ +Q ++ L FL G LE Y++ +L+ Q++M+
Sbjct: 169 LLEDVQVQLWQLLLEYLSLSEIRQMDLVEVLSFLFVLGTLELGKDYSIESLTNTQQAMLS 228
Query: 211 DFADLGLVKLQQGRKESWFIPTKLATNLSMS-----------LTDSSARKEGFVVVETNF 259
D D GLV Q+ F PT+LAT L+ S +S+ + F+++ETN+
Sbjct: 229 DLRDYGLV-WQRKTSSKRFYPTRLATTLTSSAPPLLPTTESSSFTTSSDNKRFIILETNY 287
Query: 260 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAH 319
R+YAY+++ L IL LF ++ + PNL++G IT++S+ +A NGITAEQII +L +AH
Sbjct: 288 RLYAYTSNPLQISILNLFVTLKARYPNLVIGVITRDSIRSALSNGITAEQIIGYLTSHAH 347
Query: 320 PRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLW 379
++ P +P V DQIRLWE + NR++ Y EF S+ +E +YA+ +LW
Sbjct: 348 TQMHRNNPLLPVTVSDQIRLWELEKNRLKADDGVLYAEFRSQPDYEILLNYAKSYDCVLW 407
Query: 380 EDSKKMRLVVNAEIHMHMREFLR 402
+ K V E H +REF+R
Sbjct: 408 SNDIKRMFFVTLEGHQIVREFVR 430
>gi|90398991|emb|CAJ86263.1| H0801D08.21 [Oryza sativa Indica Group]
Length = 119
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 92/117 (78%), Gaps = 2/117 (1%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQV ++A+NFMDMVA+L A L+ LY++ FICEA+LRSLPPLAKKY QMLY+ + A
Sbjct: 1 MPQVMVVARNFMDMVAALPAAKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVSAPVAA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKKKETTYRLNSTFQSNLQKHLING 115
MEEWVL + KH+VAIDRL+QLR+F E +++KE +Y++N FQ N+QK+L++G
Sbjct: 61 AAMEEWVLDEYAAKHRVAIDRLLQLRVFVEVRDRRKEVSYKMNQKFQGNMQKYLVDG 117
>gi|392901992|ref|NP_001255864.1| Protein Y73F8A.24, isoform b [Caenorhabditis elegans]
gi|290457493|emb|CBK19514.1| Protein Y73F8A.24, isoform b [Caenorhabditis elegans]
Length = 431
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 137/217 (63%), Gaps = 9/217 (4%)
Query: 194 EAYNLNT-LSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT--DSSARK- 249
E Y ++ +E Q ++ +LG++ +++ RK+ F T+L T+L+ + T D SA K
Sbjct: 197 ECYQIDANWTEPQNELLNHLRELGVIFIRK-RKDGVFFLTQLLTHLATNETIDDVSAEKV 255
Query: 250 -EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 308
G V+VETNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA
Sbjct: 256 SNGKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAA 315
Query: 309 QIISFLQQNAHPR---VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFE 365
QIISFL+ NAHP+ + + +P V DQIRLWE + R+ + A+ Y F S D F
Sbjct: 316 QIISFLRANAHPQCIATSGPVNCLPITVADQIRLWEDERRRMNLKDAYIYSHFESEDEFH 375
Query: 366 AACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
C+YAR ++ LLW D+++ ++VN + H +R++ +
Sbjct: 376 GVCEYARQQNILLWSDNQQKLVIVNEDGHELVRQWYK 412
>gi|358333989|dbj|GAA34589.2| transcription initiation factor TFIIH subunit 4 [Clonorchis
sinensis]
Length = 456
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 186/410 (45%), Gaps = 69/410 (16%)
Query: 23 LNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRL 82
L++L+ +P C I R LP LAK +V ++L+++ IP + WV + A L
Sbjct: 21 LDELFSHPPTCLVIFRELPELAKHFVARLLFVEQPIPKSIVSGWVEKGSQALLQDACRAL 80
Query: 83 VQLRLFS--EEKKKETTYRLNSTFQSNLQKHLINGG-ALPREPMPSGITARLPTLEDLEA 139
LR++ + + L+ +Q +L+ L GG L + + + ++ LE
Sbjct: 81 SDLRIWHSVDGNVARGAWCLSKKYQESLRISLFGGGKPLLGDLGSTAVDKYSKDVDFLET 140
Query: 140 YAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRS-------------LK 186
YA +W+ L ++ S SS + V Q LL+ ++++
Sbjct: 141 YAAERWDALLHFMVGSE--------SSEVGSVVQDVLLLSNLMKGGTPDTPVGITKHGFH 192
Query: 187 FLCQG--------------ILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 232
FL L++Y ++ L+ Q+ +++ +LGL Q+ R F T
Sbjct: 193 FLLMSRPDQVRLFLLHYFDYLKSYPVDALTAPQQEVLQQMRELGLA-YQRKRTAPRFYVT 251
Query: 233 KLATNLSMSL------------------------------TDSSARKEGFVVVETNFRMY 262
LAT LS S T SS G++++ETNFR+Y
Sbjct: 252 PLATVLSGSRCHQPAMSSGSVLSAIPTGVSHLEGTDSVQPTASSTSDVGYILLETNFRLY 311
Query: 263 AYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV 322
AY+ S L +L LFSKI + PNL+V IT++S+ A GITA+QIISFL NAHP +
Sbjct: 312 AYTDSPLRTALLSLFSKIRARFPNLVVADITRDSVREALIRGITADQIISFLTTNAHPDM 371
Query: 323 ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
P +P + DQIRLWE + +R YE+F FE D+A+
Sbjct: 372 LREPPILPPTLVDQIRLWELERDRFVFQEGCLYEQFSKSADFEMVRDFAK 421
>gi|390370355|ref|XP_783140.3| PREDICTED: general transcription factor IIH subunit 4-like, partial
[Strongylocentrotus purpuratus]
Length = 180
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 114/179 (63%), Gaps = 2/179 (1%)
Query: 224 RKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIE 281
RK + PT+LA NL+ ++ + K+GF+VVETNFR+YAY+ S L EIL LF +
Sbjct: 1 RKSMRYYPTRLAINLASGVSSMAKDDHKDGFIVVETNFRIYAYTESDLQVEILGLFCSMM 60
Query: 282 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWE 341
Y+ PNL V A+T+ES+ A NGITAEQI+SFL+ +AHP + + P VP + DQ+RLWE
Sbjct: 61 YRFPNLSVAALTRESVQLAISNGITAEQILSFLRTHAHPNMRLKTPIVPPTISDQVRLWE 120
Query: 342 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 400
+ +R+ T Y EF S FE DYA+D L+W+ + + ++V+ H ++++
Sbjct: 121 LERDRLSFTQGIIYNEFLSLHDFEVLRDYAKDLGVLIWDSTARRIMIVSPAGHDSVKKY 179
>gi|452977455|gb|EME77221.1| hypothetical protein MYCFIDRAFT_146475 [Pseudocercospora fijiensis
CIRAD86]
Length = 476
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 126/452 (27%), Positives = 197/452 (43%), Gaps = 96/452 (21%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEW 66
A+ ++ + L KLY+ P AI R LP +AK V MLY+ ++ W
Sbjct: 5 AQRALEYLEQLPGTTFTKLYQQPSTALAIFRRMLPHMAKTLVMAMLYMPTPFSVADLDTW 64
Query: 67 VLPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSG 126
V P+ H A + K++ RLN F +L++ L GG +P
Sbjct: 65 VKPE----HDSA-----------QAKERRPALRLNPAFSKSLRQALTGGGNHRSFGVPCT 109
Query: 127 ITARLP-TLEDLEAYAIGQWECFLLQLISSAQA--ERPTNFSSSMMKVFQRGLLIQS--- 180
+ T+E L+ +A QWE L ++ SA + + +S K+ + G +Q
Sbjct: 110 TPDKSSVTIEFLDTFARKQWETILYYVVGSANSALSGGMDVHNSTKKLLENGEFVQMQNG 169
Query: 181 ------ILRSLKFLCQ-----------------------------------GILE---AY 196
FL Q G LE +Y
Sbjct: 170 GRQRFITTDGFTFLLQDVNAQIWSLLIVYLQTSETECFMDPVDVLSFLFTLGSLELGTSY 229
Query: 197 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTD------------ 244
+ + L++ Q M++D +DLGL+ + + PT+LAT L+
Sbjct: 230 STSNLTKTQLQMLEDLSDLGLIF--HPEQSDRYYPTRLATTLTSDAPALLNSSHTSTTTT 287
Query: 245 ----------SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 294
+SA ++GF+++ETN+R+YAY+ S L IL LF+ + + PNL+ ITK
Sbjct: 288 VSASSNDDLAASANEKGFIILETNYRLYAYTNSPLLISILSLFASLHTRYPNLVTAKITK 347
Query: 295 ESLYNAFENGITAEQIISFLQQNAHP---RVAD--RIPSVPENVCDQIRLWESDLNRVEM 349
S+ A +GIT+ QIIS+LQ +AHP R A P +P V DQIRLW+ + R+
Sbjct: 348 TSVQAAISSGITSNQIISYLQTHAHPILRRTASMHNAPILPPTVVDQIRLWQIEGERMTS 407
Query: 350 TPAHYYEEFPSRDVFEAACDYARDRSGLLWED 381
T + E S++ +E A YA + G+L +D
Sbjct: 408 TKGYLIREVGSKEDYEKAVQYA-EALGILVKD 438
>gi|367009216|ref|XP_003679109.1| hypothetical protein TDEL_0A05660 [Torulaspora delbrueckii]
gi|359746766|emb|CCE89898.1| hypothetical protein TDEL_0A05660 [Torulaspora delbrueckii]
Length = 513
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 124/490 (25%), Positives = 210/490 (42%), Gaps = 121/490 (24%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
++LY++P C AI R LP +AK ++ M++ + I + ++ WV G + + AI +
Sbjct: 24 SRLYQSPATCLAIYRLLPQMAKFFIMSMVFNENEISLRDLDRWVKASGKNQFQDAIKSMK 83
Query: 84 QLRLFSEEKKKE-TTYRLNSTFQSNLQKHLING------GALPREPMPSGITARLPTLED 136
L L + LN TF+ + + L G G + EP + E
Sbjct: 84 SLHLLIPVRTNGPMMINLNQTFRESFRNALTGGEVNNSFGIVVDEP------NDVVNTEM 137
Query: 137 LEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRS---------LKF 187
L+AY+ +WE L ++ ++ A P S +++ + + L++ + + +F
Sbjct: 138 LDAYSADKWETILHFMVGTSLASTP---SGNVLNLLKHSKLMEEVSTTGEFKITNEGFQF 194
Query: 188 LCQ----------------------------------GILE---AYNLNTLSEIQRSMIK 210
L Q G LE Y+++ LS+ Q+ M K
Sbjct: 195 LLQEVNSQIWALLLQYLKMTETLQMDPVEVLNFIFMLGALEFGKPYSMDGLSDTQKLMSK 254
Query: 211 DFADLGLVKLQQGRKESWFIPTKLATNLSMSLT-----------------DSSARK---- 249
D D GLV Q+ F PT+LAT L+ D ++ K
Sbjct: 255 DMRDYGLV-FQKNSNSKVFYPTRLATMLTSDAKSIRGASGAMDSVLKQNKDEASNKAASS 313
Query: 250 -------------------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG 290
+G ++VETNF++Y+YS S L IL LF ++ + N++ G
Sbjct: 314 NADADSDDDEVGINGQPIQDGALIVETNFKLYSYSNSPLQIAILSLFVHLKSRFTNMVTG 373
Query: 291 AITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRIPSVPEN 332
IT+ES+ A NGITA+QII++LQ +AHP++ D + +P
Sbjct: 374 QITRESIRRALINGITADQIIAYLQTHAHPQMRRLAEEKLEKKLELDANCKDTLQILPPT 433
Query: 333 VCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAE 392
V DQI+LW+ +L+R+ Y + S + YA+D LLW+D +K V+ E
Sbjct: 434 VVDQIKLWQLELDRIISYDGSLYSDIDSHQEYILLSTYAQDIGVLLWKDDRKRIFFVSKE 493
Query: 393 IHMHMREFLR 402
+ + ++ +
Sbjct: 494 GNSQVLDYAK 503
>gi|296422658|ref|XP_002840876.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637102|emb|CAZ85067.1| unnamed protein product [Tuber melanosporum]
Length = 460
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 118/423 (27%), Positives = 195/423 (46%), Gaps = 67/423 (15%)
Query: 17 SLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKH 75
SL +LY+ P AI R LP LAK V +LY + + +E V P+ + +
Sbjct: 13 SLPPVTFRRLYQQPATALAIFRRMLPNLAKTIVTTLLYNETPVTLGDLEALVRPESYRER 72
Query: 76 KVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLP-TL 134
+ A +L +L + +E L+ + +K+ G +P + T+
Sbjct: 73 EDAFSKLRRLHIITENN-------LDVSLDPVFKKNFRLAGDHHSFGVPCNAEDKKKITV 125
Query: 135 EDLEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMKVFQRG------------- 175
+ L+ YA Q+E L ++ + +P+ +M+ + G
Sbjct: 126 QFLDDYATRQFEAILHYMVGTHNEVKPSKGVITLLTKGGLMERYGAGSSATITKNGFSFL 185
Query: 176 ----------LLIQSILRS----------LKFLCQ-GILE---AYNLNTLSEIQRSMIKD 211
LLIQ + S L FL G LE AY++NTL+E Q+ M+ D
Sbjct: 186 LQDGNPQIWALLIQYLEMSEELGMEQTDVLHFLLMLGSLELGQAYSVNTLTETQKLMLAD 245
Query: 212 FADLGLVKLQQGRKESWFIPTKLATNLS--------------MSLTDSSARKEGFVVVET 257
D G+V Q+ F PT+LAT L+ ++ + +GF+++ET
Sbjct: 246 LRDYGIV-YQRKSSSDRFYPTRLATTLTSESGGLRSASASMSSAMAKDAEEGKGFIILET 304
Query: 258 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 317
N+R+YAY+ S L +L LF K+ + PNL+ G I++ S+ A + GITA+Q+I +L +
Sbjct: 305 NYRVYAYTDSPLQIAVLNLFVKLSTRYPNLVSGRISRRSIQEAIKMGITADQVIDYLSAH 364
Query: 318 AHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGL 377
AHP++ + ++P V DQIRLW+ + R+ T +++F S FE YA + L
Sbjct: 365 AHPQMRKSLVTLPPTVVDQIRLWQIEGERMRTTTGFLFKDFHSTQEFEEVAKYAEELGVL 424
Query: 378 LWE 380
W+
Sbjct: 425 KWK 427
>gi|326474968|gb|EGD98977.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
Tfb2 [Trichophyton tonsurans CBS 112818]
Length = 489
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 121/439 (27%), Positives = 195/439 (44%), Gaps = 86/439 (19%)
Query: 25 KLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
KLY+ P AI R LP LAK +V +LY+ +PA +E WV D + ++ L
Sbjct: 22 KLYQQPSTALAIFRRMLPHLAKCFVMALLYLKDPLPATELELWVRSDSRRERDNSLSILG 81
Query: 84 QLRLFSEEKKKE--TTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLP-TLEDLEAY 140
+L + S Y + F ++L++ L+ + S + P ++ DL Y
Sbjct: 82 RLHILSSTTTSNHVRAYMVTEPFSTSLRQALMGEDQQGSFGVISVTPDKYPVSVADLNEY 141
Query: 141 AIGQWECFLLQLI--SSAQAERPT-NFSSSMMKVFQRGLLIQSILRSLKFLCQG------ 191
A QWE L ++ SS R T S + ++ Q L++ R ++ +G
Sbjct: 142 ARQQWEAVLGYMVGMSSLSGGRETITLSKGVKQLLQACHLVEIRDRRVEITKEGFAFVLQ 201
Query: 192 --------------------------------------ILEAYNLNTLSEIQRSMIKDFA 213
+ ++Y L+ Q + D
Sbjct: 202 DVNTQVWHILILYVENAEAIGMESVEVLSFIFLLSSLELGQSYEKKDLTPTQLRTLADLT 261
Query: 214 DLGLV-KLQQGRKESWFIPTKLATNLSMSLTDSSARK----------------------- 249
D G+V + + F PT+LAT L+ +DS A
Sbjct: 262 DFGIVYQHTPASGSARFYPTRLATTLT---SDSLAMSGPISGEPAVPTTTSGTTTSGDAG 318
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
GF++VETN R+YAY++S L ++ LF+ ++++ PNLI G IT++S+ A E GITA+Q
Sbjct: 319 TGFIIVETNHRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQSVRRAIEMGITADQ 378
Query: 310 IISFLQQNAHPRVADRIPS--------VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR 361
IIS+L +AHP++ S +P V DQIRLW+ + +R++ T ++EF +
Sbjct: 379 IISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQLERDRIKATSGFLFKEFDTF 438
Query: 362 DVFEAACDYARDRSGLLWE 380
FEA C YA + L+W+
Sbjct: 439 AEFEAPCKYAEEIGVLVWK 457
>gi|156057729|ref|XP_001594788.1| hypothetical protein SS1G_04596 [Sclerotinia sclerotiorum 1980]
gi|154702381|gb|EDO02120.1| hypothetical protein SS1G_04596 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 420
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 108/417 (25%), Positives = 195/417 (46%), Gaps = 74/417 (17%)
Query: 58 IPAKTMEEWVLPDGFTKHKVAIDRLVQLRLF---SEEKKKETTYRLNSTFQSNLQKHLIN 114
+P +++WV P + A+ L +L + + ++ T L +F ++L+ L
Sbjct: 5 LPLTALDQWVQPKSKRQKDQALSLLSRLHIVDITALSREDPQTVALTKSFGTSLRLALTG 64
Query: 115 GGALPREPMPSGI-TARLPTLEDLEAYAIGQWECFLLQLI------SSAQAERPTNFSSS 167
GG +PS A ++ L+ +A QWE L ++ S + P
Sbjct: 65 GGNHQSFGVPSSDHIAPHVDIDFLDVHARMQWEGILHYMVNNVAAGSGQEGSGPAGSVKK 124
Query: 168 MM---KVFQRGLLIQSILRSLKFLCQ---------------------------------- 190
++ K+ RG + FL Q
Sbjct: 125 LLDAGKLVTRGRSVGITQAGFSFLLQEANAQVWTLLLLWIENAESMGMDSVDVLSFLFML 184
Query: 191 GILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM------- 240
G LE AY+ TL++ Q +M+ + D GL+ L +F PT+LAT L+
Sbjct: 185 GSLELGRAYSTTTLTDAQHNMLGNLIDFGLIYLPPSAPTQFF-PTRLATTLTSDASALRT 243
Query: 241 ------SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 294
+ + S+A ++GF+++ETN+R+YAY+ S L +L LF+K+ + PN++ G +++
Sbjct: 244 VSAGFDAASKSAANQKGFIIIETNYRLYAYTNSPLQIAVLSLFTKLNTRYPNMVSGRVSR 303
Query: 295 ESLYNAFENGITAEQIISFLQQNAHPRV------ADRIPSVPENVCDQIRLWESDLNRVE 348
+S+ A +GIT++QII++L +AHP++ A P +P V DQIRLW+ + R++
Sbjct: 304 DSIRTAISHGITSDQIITYLSTHAHPQLVKASTAAHGGPVLPPTVVDQIRLWQLENERMK 363
Query: 349 MTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQ 404
P ++EF + +E YA + L+W+ D+K+M V E +R++++ +
Sbjct: 364 AVPGFLFKEFDGQKEYEGCAKYAEEVGVLVWKNDAKRMFFVTRVE---QLRDYIKAR 417
>gi|2245059|emb|CAB10482.1| transcription factor like protein [Arabidopsis thaliana]
gi|7268453|emb|CAB80973.1| transcription factor like protein [Arabidopsis thaliana]
Length = 101
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 78/90 (86%)
Query: 1 MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA 60
MPQVKIIAKNFMDMVASL A L+KLY N FICEAILRSLPPLAKKYV QMLYID +PA
Sbjct: 1 MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60
Query: 61 KTMEEWVLPDGFTKHKVAIDRLVQLRLFSE 90
MEEWVL DG +KH+VAIDRL+QLR+FSE
Sbjct: 61 TMMEEWVLADGTSKHRVAIDRLIQLRIFSE 90
>gi|149031822|gb|EDL86757.1| rCG41794 [Rattus norvegicus]
Length = 209
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 124/200 (62%), Gaps = 3/200 (1%)
Query: 207 SMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRMYAY 264
+ ++ + GLV Q+ RK + PT+LA NLS ++ + + + GF+VVETN+R+YAY
Sbjct: 7 NFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAY 65
Query: 265 STSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVAD 324
+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP +
Sbjct: 66 TESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLK 125
Query: 325 RIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKK 384
+ P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 126 QTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAK 185
Query: 385 MRLVVNAEIHMHMREFLRGQ 404
+VV H ++ F + Q
Sbjct: 186 RLMVVTPAGHSDVKRFWKRQ 205
>gi|392594381|gb|EIW83705.1| transcription factor Tfb2 [Coniophora puteana RWD-64-598 SS2]
Length = 393
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 178/379 (46%), Gaps = 79/379 (20%)
Query: 7 IAKN----FMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
IA+N + + S + L +LY+ P C +I R L PL+K+ V +L++D + A T
Sbjct: 13 IAQNSPHVLLPFLQSQSQNALTRLYQRPSSCLSIFRLLAPLSKQLVMNLLWLDSPVLAGT 72
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREP 122
M WV+ DG + A++ L++L + K LN TF++++++ + G
Sbjct: 73 MAAWVVLDGKKLYDEALNTLMRLHILQSSGAK---LALNPTFKASMRQAITCSGTTGSFG 129
Query: 123 MPSGITAR--LPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQR-GLLIQ 179
+P+ + P++E L+ YA+ +WE L ++SS Q + PT + ++ + QR GL+
Sbjct: 130 VPAQRDDKRDAPSVETLDGYAVQRWETILHYMVSSGQGQYPTKPTQGVLYLLQRSGLMAS 189
Query: 180 SILRSLKFLCQG--------------------------------------------ILEA 195
+L+ G +
Sbjct: 190 YHGSTLQITSSGFQFLLYSPRDQLWDLLLQYLHMVEERQMDLVEVLSFFFMLSTMELGRE 249
Query: 196 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM--------------- 240
Y+ LSE Q++M++D D GLV Q+ F PT+LAT L+
Sbjct: 250 YSTEPLSETQKAMLEDLRDYGLV-WQRKASSKRFSPTRLATTLTSVSPSLPTAGGSRNPG 308
Query: 241 ------SLTDSSA---RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 291
S+ +S+ GF+V+ETN+R+YAY+ + L +L LF ++Y+ PNL+VG
Sbjct: 309 SAPGASSVANSTGINTNDHGFIVLETNYRVYAYTDNPLQIAVLNLFITLKYRFPNLVVGM 368
Query: 292 ITKESLYNAFENGITAEQI 310
+T+ES+ A NGI+AEQI
Sbjct: 369 LTRESVRRALGNGISAEQI 387
>gi|154273196|ref|XP_001537450.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150415962|gb|EDN11306.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 455
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 121/442 (27%), Positives = 192/442 (43%), Gaps = 103/442 (23%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
M+ + SL +LY+ P AI R LP LAK +V +LY+ +PA +E WV
Sbjct: 9 MEYLESLPGTVFRRLYQQPSTALAIFRRMLPYLAKCFVMALLYLKDPLPAADLELWV--- 65
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITAR 130
E K+ Y + F S+L++ L G +PS
Sbjct: 66 ------------------KAESKR--AYTVTDPFSSSLRQALTGGDKQQSFGVPSLTDDE 105
Query: 131 LP-TLEDLEAYAIGQWECFLLQLI--SSAQAERPTNFSSSMMKVFQRGLLIQS------- 180
T+ L+ YA QWE L ++ S+ ++ S + ++ Q L++
Sbjct: 106 NSMTVAQLDYYARSQWEGVLGYMVGTSALGVQQAVTLSKGVKQLLQACHLVEVRDRRVEI 165
Query: 181 -------ILRSLKFLCQGIL------------------------------EAYNLNTLSE 203
+L+ L IL ++Y L+
Sbjct: 166 TKDGFAFVLQDLNTQVWHILILYVENAEQIGMDSIEVLSFLFVLSSLELGQSYEKKHLTS 225
Query: 204 IQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNL-----------SMSLT-------- 243
Q + D D G+V +E+ F PT+LAT L S SLT
Sbjct: 226 TQLKTLADLTDFGIVYQHSPHQEATRFYPTRLATTLTSDSITLGSSISSSLTAPNGVPSA 285
Query: 244 DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFEN 303
S+ GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G +T++S+ A E
Sbjct: 286 TSNEPSTGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGKLTRQSVRRAVEM 345
Query: 304 GITAEQIISFLQQNAHPRVADRIPS------------VPENVCDQIRLWESDLNRVEMTP 351
GITA+QIIS+L +AHP++ + +P V DQIRLW+ + +R++ TP
Sbjct: 346 GITADQIISYLTTHAHPQMRKYHATKPGANPVGVHTVLPPTVVDQIRLWQLERDRIKATP 405
Query: 352 AHYYEEFPSRDVFEAACDYARD 373
+++F S FE C YA +
Sbjct: 406 GFLFKDFVSLAEFEGPCRYAEE 427
>gi|320167307|gb|EFW44206.1| transcription factor tfb2 [Capsaspora owczarzaki ATCC 30864]
Length = 406
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 113/391 (28%), Positives = 185/391 (47%), Gaps = 69/391 (17%)
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGG-----ALPREPMPS 125
G H A++RL LR+ +T + L+ +F+ L+ L GG A P EP
Sbjct: 3 GGGAHLEALERLKALRI---AVANDTHWLLSPSFRVGLRTALSGGGKSWAGADPLEP--- 56
Query: 126 GITARLPTLEDLEAYAIGQWECFLLQLISSAQAE-------------------------- 159
A + +LE Y+ +WE +LQ +++A E
Sbjct: 57 --DAHAKDISELEQYSRARWEA-VLQFMAAANTEGVTQEVVNVLIDAELISLSTTGEGAG 113
Query: 160 RP----------------------TNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYN 197
RP T + +S+ K + ++L L F G+ Y
Sbjct: 114 RPVITNKGFQFLLQDVATQVWYFLTQYLNSLQKRGADPVEALALLFRLSFSTVGM--DYP 171
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVV 255
+ L+E Q +++ ++GLV ++ R F PT LA NL+ + +A +G++VV
Sbjct: 172 VEGLTEGQLDLLQHLREIGLV-FRRKRTSRRFYPTPLAINLASGSAKNLDAADVKGYIVV 230
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETNFR+YAY+ S L +L LF + Y+ PN++ G ++++S+ A G+TAEQ+I FL+
Sbjct: 231 ETNFRIYAYTDSPLQLALLSLFVDLRYRFPNMVCGLLSRDSVRKALVKGLTAEQMIRFLR 290
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
+AHP++ R P +PE + DQ+RLWE + NR+ + PA YE F ++ + Y RD
Sbjct: 291 THAHPQMRSRTPVLPETISDQLRLWELERNRLRVLPAVLYERFSNQREHDLLHHYGRDLG 350
Query: 376 GLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
L S+ +VV E H ++ F + +
Sbjct: 351 VELAHSSQH--IVVTFEGHEQIKTFWQAHRQ 379
>gi|366991461|ref|XP_003675496.1| hypothetical protein NCAS_0C01390 [Naumovozyma castellii CBS 4309]
gi|342301361|emb|CCC69129.1| hypothetical protein NCAS_0C01390 [Naumovozyma castellii CBS 4309]
Length = 516
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 126/495 (25%), Positives = 214/495 (43%), Gaps = 125/495 (25%)
Query: 25 KLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQ 84
+LYE+P C AI R LP LAK +V M++ D + + ++ WV +G + + AI +
Sbjct: 24 RLYESPATCLAIYRLLPQLAKFFVMSMVFNDKEVSLRDLDRWVKSNGKMQFQDAIKSMKS 83
Query: 85 LRLF--SEEKKKETTYRLNSTFQSNLQKHLING------GALPREPMPSGITARLPTLED 136
L L S+ LN TF+ + + L G G + + +G+ + L+
Sbjct: 84 LHLIIPSKSNGGPLMINLNPTFRESFKNALTGGQVDNSFGIVADDDDDNGVVS----LQL 139
Query: 137 LEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRS---------LKF 187
L+ Y+ +WE L ++ + + P S+S++ + + L++ + + +F
Sbjct: 140 LDEYSANKWETILHFMVGTPMSSIP---SASVLNLLKHTRLMEEVDHTSEFKITNEGFQF 196
Query: 188 LCQ----------------------------------GILE---AYNLNTLSEIQRSMIK 210
L Q G LE Y+++ LSE Q+ M+K
Sbjct: 197 LLQELNSQIWTLLLQYLKMSETLKMDSVDVLNFIFMLGALEVGKGYSIDGLSETQKIMLK 256
Query: 211 DFADLGLVKLQQGRKESWFIPTKLATNLSMSLT-------------------DSSARK-- 249
D D GLV Q+ + F PT LA L+ DSS +
Sbjct: 257 DMRDYGLV-FQKYTNSNLFYPTNLALMLTSDTKSIVRTASGALESVLQNKREDSSKQANG 315
Query: 250 ------------------------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLP 285
+G +++ETNF++Y+YS S L L LF ++ +
Sbjct: 316 EINKDLITNGDELDQVGYNPQDIPDGSLIIETNFKLYSYSNSPLQIATLSLFVHLKSRFA 375
Query: 286 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRIP 327
N++ G IT+ES+ A NGITA+QII++L+ +AHP++ D +
Sbjct: 376 NMVTGQITRESIRRALINGITADQIIAYLETHAHPQMRRLAEERLEKKLELDPNSKDPLQ 435
Query: 328 SVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRL 387
+P V DQI+LW+ +L+RV Y +F + + YA+D LLW+D KK +
Sbjct: 436 VLPPTVVDQIKLWQLELDRVITYEGSLYSDFETIAEYTTLSKYAQDIGVLLWKDDKKKKF 495
Query: 388 VVNAEIHMHMREFLR 402
V+ E + + ++ +
Sbjct: 496 FVSKEGNSQVLDYAK 510
>gi|453082965|gb|EMF11011.1| RNA polymerase II transcription factor B subunit 2 [Mycosphaerella
populorum SO2202]
Length = 507
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 123/445 (27%), Positives = 202/445 (45%), Gaps = 82/445 (18%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEW 66
A+ ++ + L KLY+ P AI R LP LAK V +LY+ A ++ W
Sbjct: 5 AQRALEYLEQLPGTTFTKLYQQPSTALAIFRRMLPHLAKTMVMALLYLPQPFAAADLDAW 64
Query: 67 VLPDGFTKH--KVAIDRLVQLRL-FSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPM 123
V PD + + A+ L +L++ + E + YRL+ F +L+ L G +
Sbjct: 65 VKPDHDSTQAKERALSILQRLKIVYDEPYQGRPAYRLSPAFGKSLRSALTGSGTHNSFGV 124
Query: 124 PSGITARLP-TLEDLEAYAIGQWECFLLQLISSAQAERP--TNFSSSMMKVFQRG----- 175
P + P T++ L+ +A QWE L ++ SA A + SS + + G
Sbjct: 125 PCTEPDKHPVTVDYLDTFARTQWEAILYYVVGSASAGLGGGVDISSGTRTLLETGKFVVV 184
Query: 176 ---------------LLIQSI-----------------------LRSLKFLCQ-GILE-- 194
L+Q + + L FL G LE
Sbjct: 185 KGGGRHRAITTDGFTFLLQDVNAQVWSLLIVYLEVSGDLLQMDSVDVLSFLFTLGSLELG 244
Query: 195 -AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM---SLTDSS---- 246
+Y+ + L+ Q M+ D + GLV + + ++ PT+LAT L+ +L ++S
Sbjct: 245 VSYSTSNLTPTQLQMLDDLTNFGLVYRRSPSSDRYY-PTRLATTLTSDAPALPNNSFTTT 303
Query: 247 ---------------ARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 291
A ++G++++ETN+R+YAY++S L IL LF+ + + PNLI
Sbjct: 304 TTTNQNADPNDPAATASEKGYIILETNYRLYAYTSSPLPISILSLFASLNTRYPNLITAK 363
Query: 292 ITKESLYNAFENGITAEQIISFLQQNAHP-----RVADRIPSVPENVCDQIRLWESDLNR 346
ITK S++ A +GIT++QIIS+LQ +AHP + P +P V DQIRLW+ + R
Sbjct: 364 ITKTSIHTAIASGITSDQIISYLQTHAHPILRRQAALNSAPILPPTVVDQIRLWQIEGER 423
Query: 347 VEMTPAHYYEEFPSRDVFEAACDYA 371
++ T + + + D + A YA
Sbjct: 424 MKSTKGYLIRDVGTEDDYTKAVQYA 448
>gi|46127843|ref|XP_388475.1| hypothetical protein FG08299.1 [Gibberella zeae PH-1]
gi|408390907|gb|EKJ70292.1| hypothetical protein FPSE_09509 [Fusarium pseudograminearum CS3096]
Length = 494
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 129/484 (26%), Positives = 218/484 (45%), Gaps = 102/484 (21%)
Query: 18 LTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHK 76
L KLY+ P AI R LP LAK +V ++L+ I +++WV P +
Sbjct: 16 LPGTTFRKLYQQPSTALAIFRRMLPQLAKVFVMRILFNPKPILLSDLDDWVKPSHKRQKD 75
Query: 77 VAID-----RLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARL 131
A+ +VQ+ S+E+ +E +L + F+ +L+ L GG+ +PS T ++
Sbjct: 76 QALSVMRVLHIVQISTPSKERPQE--MQLTTNFKVSLRLALSGGGSHNSFGVPS--TLQI 131
Query: 132 P---TLEDLEAYAIGQWECFLLQLISSA---QAERPTNFSSSMMKVFQRGLLIQ------ 179
P ++ L+ YA +WE L ++SS A + + S+ ++ G L+
Sbjct: 132 PPEIDIDFLDRYARKKWEDILHFVVSSVGYKSAGESSGPNKSVKELLVAGRLVDRRPSGA 191
Query: 180 -SILRS-LKFLCQ----------------------GILEAYNL----------------- 198
I ++ FL Q LEA ++
Sbjct: 192 IGITQAGFTFLLQEANAQVWTLLLLWLEAMDVNKMAGLEATDMLSFLFVLASMELGRAYD 251
Query: 199 -NTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM----------------- 240
N L+E +++M+ D GL+ + K S F PT+LAT L+
Sbjct: 252 TNALTEQRKNMLPSLVDFGLIYIPN-HKRSMFFPTRLATTLTSSSNSLRSISDGVAAATA 310
Query: 241 -------------SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 287
S T SS + G V++ETN+R+YAY+ S L +L LF+K++ + P++
Sbjct: 311 AALQPGQSRAPGSSATGSSNEQRGSVIIETNYRIYAYTQSTLQIAVLALFTKLQMRFPDM 370
Query: 288 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA-----DRIPSVPENVCDQIRLWES 342
+ G I+++S+ A GITAEQIIS+L +AH ++ + P +P V DQIRLW+
Sbjct: 371 VAGRISRQSIRQAINFGITAEQIISYLSAHAHDQMRRTASLNNKPVLPPTVVDQIRLWQL 430
Query: 343 DLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+ R++ T +++F + A +A + L+W + K A H +R++LR
Sbjct: 431 ENERMKTTGGFLFKDFEDHKEYMAVAGFAEEVGVLVWRNDVKGMFF--ASKHEQIRDYLR 488
Query: 403 GQNK 406
+ K
Sbjct: 489 IRKK 492
>gi|406862938|gb|EKD15987.1| tfiih and nucleotide excision repair factor 3 complexes subunit
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 421
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 180/371 (48%), Gaps = 72/371 (19%)
Query: 100 LNSTFQSNLQKHLINGGALPREPMPS-GITARLPTLEDLEAYAIGQWE---CFLLQLISS 155
L F+++L+ L GG +PS TA E L+ YA +WE F++ + +
Sbjct: 46 LTKNFRASLRLALTGGGEQQSFGIPSHDSTASGVDAEFLDNYARERWEDILHFVVNSVGN 105
Query: 156 AQAERPTNFSSSMMKVFQRGLLIQSILRS--------LKFLCQ----------------- 190
+ + T +S+ + + G L+ + RS FL Q
Sbjct: 106 SMRQDGTGPPTSVRLLLEAGKLVTTGRRSGGGITQAGFSFLLQEVNAQVWALLLLWIENA 165
Query: 191 -----------------GILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFI 230
G LE +Y+ TLS QR+M+K D GLV + +F
Sbjct: 166 EKMELESVEVLSFLFMLGSLELGKSYSTATLSASQRAMLKYLVDFGLVYSPSSTPQQFF- 224
Query: 231 PTKLATNLSMSLTD-------------SSARKEGFVVVETNFRMYAYSTSKLHCEILRLF 277
PT+L+T L+ + S + +GF+++ETN+R+YAY+ S L +L LF
Sbjct: 225 PTRLSTTLTSDASGLRSVSAGFDDALKSESGTKGFIIIETNYRLYAYTNSPLQIAVLALF 284
Query: 278 SKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI-----PSVPEN 332
+K+ + PN++ G +T++S+ NA +GIT++QIIS+L+ +AHP++ P +P
Sbjct: 285 TKMGVRYPNMVTGRVTRKSVANAISHGITSDQIISYLRAHAHPQLVKAAAVNGNPVLPPT 344
Query: 333 VCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNA 391
V DQIRLW+ + R++ T ++EF ++ +E YA + L+W+ D+K+M V
Sbjct: 345 VVDQIRLWQIENERMKATAGFLFKEFETQKEYEGCARYADENGVLVWKNDAKRMFFVTR- 403
Query: 392 EIHMHMREFLR 402
H +R++L+
Sbjct: 404 --HEQLRDYLK 412
>gi|301786953|ref|XP_002928911.1| PREDICTED: LOW QUALITY PROTEIN: valyl-tRNA synthetase,
mitochondrial-like [Ailuropoda melanoleuca]
Length = 1637
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 126/455 (27%), Positives = 205/455 (45%), Gaps = 90/455 (19%)
Query: 40 LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETT 97
LP LAK +V +ML+++ +P + WV + + + L LR++ +
Sbjct: 72 LPSLAKNWVMRMLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQG 131
Query: 98 YRLNSTFQSNLQKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWECFL------- 149
LN F+ NL+ L+ GG A + G + L+ YA +WE L
Sbjct: 132 LILNPIFRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSP 191
Query: 150 --------LQLIS------SAQAERPTNFSSS----------------MMKVFQ----RG 175
QL+S SA+ P +S+ M++ Q RG
Sbjct: 192 SAAVSQDLAQLLSQAGLMKSAEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRG 251
Query: 176 LLIQSILRSLKFLCQGIL-EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKL 234
+ + IL L L L + Y++ +S+ + ++ + GLV Q+ RK + PT+L
Sbjct: 252 MDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRL 310
Query: 235 ATNLS--MSLTDSSARKEGFVVVETNFRMYAYST-------------------------- 266
A NLS +S +A + GF+VVETN+R+YAY+
Sbjct: 311 AINLSSGVSGAGGTAHQPGFIVVETNYRLYAYTGEARQRAPNSRXGVGTFLVTLEGLEGV 370
Query: 267 ----------------SKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQI 310
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QI
Sbjct: 371 WVWGXPSSSLPIPGPESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 430
Query: 311 ISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 370
I FL+ AHP + + P +P + DQIRLWE + +R+ T Y +F S+ FE +
Sbjct: 431 IHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 490
Query: 371 ARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
AR+ L++E+S K +VV H ++ F + Q
Sbjct: 491 ARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 525
>gi|402866404|ref|XP_003897374.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial,
partial [Papio anubis]
Length = 1647
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 119/456 (26%), Positives = 202/456 (44%), Gaps = 81/456 (17%)
Query: 30 PFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFS 89
P L+ P L K +V +ML+++ +P + WV + + + L LR++
Sbjct: 84 PCHLSGCLQGAPILGKNWVMRMLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWH 143
Query: 90 EE--KKKETTYRLNSTFQSNLQKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWE 146
+ LN F+ NL+ L+ GG A + G + L+ YA +WE
Sbjct: 144 TQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWE 203
Query: 147 CFLLQLISSAQAERPTNFS-----SSMMKVFQRG------------LLIQSILRSLKFLC 189
L ++ S A + + + +MK + G LL+ + + F+
Sbjct: 204 VVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFML 263
Query: 190 QGILEA-------------------------YNLNTLSEIQRSMIKDFADLGLVKLQQGR 224
Q + A Y++ +S+ + ++ + GLV Q+ R
Sbjct: 264 QYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKR 322
Query: 225 KESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRMYAY------------------ 264
K + PT+LA NLS ++ + + GF+VVETN+R+YAY
Sbjct: 323 KSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYTGEVGQSAPEEKKEGLEG 382
Query: 265 ---------------STSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
S S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+Q
Sbjct: 383 VWVWGWPPHPLSIPGSESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQ 442
Query: 310 IISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 369
II FL+ AHP + + P +P + DQIRLWE + +R+ T Y +F S+ FE
Sbjct: 443 IIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLA 502
Query: 370 YARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
+AR+ L++E+S K +VV H ++ F + Q
Sbjct: 503 HARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 538
>gi|255713706|ref|XP_002553135.1| KLTH0D09790p [Lachancea thermotolerans]
gi|238934515|emb|CAR22697.1| KLTH0D09790p [Lachancea thermotolerans CBS 6340]
Length = 506
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 125/477 (26%), Positives = 208/477 (43%), Gaps = 105/477 (22%)
Query: 18 LTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKV 77
L A+ ++LY +P C AI R LP LAK ++ +++ + + ++ WV G +
Sbjct: 17 LPAQVHSRLYSSPATCLAIYRLLPKLAKFFIMSLVFNETDASLRDLDRWVKSGGKYQFNE 76
Query: 78 AIDRLVQLRLFSEEKKKET-TYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLED 136
AI + L L E + LN F+S+ + L G + + T+
Sbjct: 77 AIKSMKSLHLLIEGNSGQPFMINLNPIFRSSFRNALTGGEV--NNSFGNVVEDENETVHT 134
Query: 137 --LEAYAIGQWECFLLQLISSAQAERPT--------------NFSSSMMKVFQRG----- 175
L+ YA +WE L ++ + + P+ SS +++ G
Sbjct: 135 SILDQYAANKWETILHFMVGTPLTQTPSRNVLSLLQHSKLMEESSSGELQITNEGFQFLL 194
Query: 176 ---------LLIQSI----------LRSLKFLCQ-GILE---AYNLNTLSEIQRSMIKDF 212
LL+Q + + L F+ G LE AY+ LS+ Q+ M++D
Sbjct: 195 QDANAQIWALLLQYLRLAETLQMDPVDVLNFIFMLGALELGKAYSDTNLSDTQKIMLQDM 254
Query: 213 ADLGLVKLQQGRKESWFIPTKL----------------ATNLSMSLTDSSARKE------ 250
D GLV Q+ F PT+L A N +S SS+++E
Sbjct: 255 RDYGLV-FQKASNTHKFYPTRLTAMLTSDTSSIRSASGAMNSVLSQGTSSSKEEAAAVAE 313
Query: 251 -----------------GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 293
G V++ETNF++Y+YS S L +L LF ++ + N++ G IT
Sbjct: 314 TDEETAQVGGTTQNIPDGAVILETNFKLYSYSNSPLQIAVLSLFVHLKSRFSNMVTGQIT 373
Query: 294 KESLYNAFENGITAEQIISFLQQNAHP---RVADR---------------IPSVPENVCD 335
+ES+ A NGITA+QII++++ +AHP R+A++ + +P V D
Sbjct: 374 RESIRRALHNGITADQIIAYMETHAHPQMRRLAEQTLDKKMELDPNCNEGLQILPPTVVD 433
Query: 336 QIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAE 392
QI+LW+ +L+R+ + + +F + + YA+D LLW D KK R V+ E
Sbjct: 434 QIKLWQLELDRIISYDGYLFTDFENFQEYNMLSSYAKDIGVLLWSDDKKKRFFVSQE 490
>gi|354546081|emb|CCE42810.1| hypothetical protein CPAR2_204530 [Candida parapsilosis]
Length = 451
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 119/463 (25%), Positives = 204/463 (44%), Gaps = 122/463 (26%)
Query: 51 MLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQK 110
M++ + +P + + +W P A+ RL L L E K T RLN+ F+SN +
Sbjct: 1 MIFNEKPMPMRDLTKWCKPSAKRMEFDALKRLESLHLI-EYDSKGTNVRLNTIFRSNFRD 59
Query: 111 HLING------GALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNF 164
L G++ + I L+ +A +WE L ++ + P+
Sbjct: 60 CLTGSQDPNAFGSISTDDDADKIETSF-----LDKFASHEWENILHFMVGTEGTPTPSRS 114
Query: 165 SSSMMKV----------------FQRGLLIQSI----------------------LRSLK 186
S++K+ FQ L+Q + + L
Sbjct: 115 VLSLLKLGGLMEGESELTITNTGFQ--FLLQDVNAQIWTLLLQYLNLTSESNMNPVDVLN 172
Query: 187 FL----CQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL 242
F+ C + ++Y++ +LSE Q SM+ D DLGL+ Q+ + S F PT+LAT L+
Sbjct: 173 FIFILGCLELGKSYSVLSLSETQVSMLADLKDLGLI-YQKSKTSSRFYPTRLATTLT--- 228
Query: 243 TDSSARK-------------EG---------FVVVETNFRMYAYSTSKLHCEILRLFSKI 280
+DSSA K EG +++ETNF++YAY+ S L IL LF ++
Sbjct: 229 SDSSALKTPSMAVEQALEESEGQMMTSTSRESIIIETNFKIYAYTNSPLEIAILNLFVQM 288
Query: 281 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA----------------- 323
+ + N++ G IT+ES+ NA NGIT++QII FL+ +AHP++
Sbjct: 289 KTRFSNMVCGQITRESIRNALYNGITSDQIIKFLETHAHPQMKALAKEKLDKKVEFDASH 348
Query: 324 -------------------DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVF 364
++ +P NV DQI+LW+ +L+R++ + +++F ++ +
Sbjct: 349 NINTAGGAPQSKTDGTISQHKLEVIPPNVVDQIKLWQLELDRIQTVEGYLFKDFANQQEY 408
Query: 365 EAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF----LRG 403
+ +YA + L+W D K + V + + +F LRG
Sbjct: 409 DMLSNYATELGVLVWGDKAKRKFFVTKDGMAQVADFANRKLRG 451
>gi|302917488|ref|XP_003052448.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733388|gb|EEU46735.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 496
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 129/485 (26%), Positives = 216/485 (44%), Gaps = 104/485 (21%)
Query: 18 LTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHK 76
L KLY+ P AI R LP LAK +V ++LY I +++WV P +
Sbjct: 18 LPGTTFRKLYQQPSTAFAIFRRMLPHLAKTFVMRILYSPKPILLTDLDDWVKPSAKRQKD 77
Query: 77 VAIDRL-----VQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARL 131
A+ L VQ+ S+E+ +E +L + F+++L+ L GG +PS T ++
Sbjct: 78 QALSILRVLYIVQITAPSKERPQEM--QLTANFKTSLRLALSGGGTHNSFGVPS--TLQV 133
Query: 132 PTLED---LEAYAIGQWECFLLQLISSAQAERPTNFSS---------------------S 167
P D L+ YA +WE +L + S+ + T SS
Sbjct: 134 PPEIDIIFLDRYARRKWED-ILHFVVSSVGYKSTGDSSGPNKSVKELLIAGRLVDRKPNG 192
Query: 168 MMKVFQRGL--LIQ---------------------------SILRSLKFLCQG--ILEAY 196
M+ + Q G L+Q + + S F+ + AY
Sbjct: 193 MVGITQAGFTFLLQEANAQVWTLLLLWLEAMDVNKGAGLEATDMLSFLFVLASMELGRAY 252
Query: 197 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS------LTDS----- 245
+ N L+E +++M+ D GL+ + K S F PT+LAT L+ S ++D
Sbjct: 253 DTNALTEQRKNMLPSLVDFGLIYIPN-HKRSMFFPTRLATTLTSSGNSLRSISDGVAAAT 311
Query: 246 -------------------SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPN 286
+ G V++ETN+R+YAY+ S L +L LFSK+ + P+
Sbjct: 312 AAALQPGQSGGSGGSTTGSGQEQRGSVIIETNYRIYAYTQSTLQIAVLALFSKLSMRFPD 371
Query: 287 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA-----DRIPSVPENVCDQIRLWE 341
++ G ++++S+ A GITA+QIIS+L +AH ++ + P +P V DQIRLW+
Sbjct: 372 MVAGRLSRQSIRQAINFGITADQIISYLAAHAHDQMHRTAALNNKPVLPPTVVDQIRLWQ 431
Query: 342 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 401
+ R++ T +++F + A +A + L+W + K A H +R++L
Sbjct: 432 LENERMKTTSGFLFKDFEDHKEYMAVAGFAEEVGVLVWRNDVKGMFF--ASKHEQIRDYL 489
Query: 402 RGQNK 406
R + K
Sbjct: 490 RIRKK 494
>gi|154308354|ref|XP_001553513.1| hypothetical protein BC1G_08237 [Botryotinia fuckeliana B05.10]
Length = 410
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 185/393 (47%), Gaps = 71/393 (18%)
Query: 79 IDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGI-TARLPTLEDL 137
+ RL + + + ++ T L F ++L+ L GG +PS A ++ L
Sbjct: 19 LSRLHIVDITALSREDPQTVALTKNFGASLRLALTGGGNHQSFGVPSSDHIAPHVDIDFL 78
Query: 138 EAYAIGQWECFLLQLI------SSAQAERPTNFSSSMM---KVFQRGLLIQSILRSLKFL 188
+ +A QWE L ++ S P N +++ K+ RG I FL
Sbjct: 79 DTHARMQWEGILHYMVNTVTSGSGKDGNGPANSVKALLDAGKLVTRGRGIGITQAGFSFL 138
Query: 189 CQ----------------------------------GILE---AYNLNTLSEIQRSMIKD 211
Q G LE AY+ TL+E Q+ M+ +
Sbjct: 139 LQEANAQVWTLLLLWIENAESMGMDSVDVLSFLFMLGSLELGRAYSTKTLTEAQKGMLAN 198
Query: 212 FADLGLVKLQQGRKESWFIPTKLATNLSM-------------SLTDSSARKEGFVVVETN 258
DLGL+ L + F PT+LAT L+ + + S+A ++GF+++ETN
Sbjct: 199 LIDLGLIYLPP-SAPTQFFPTRLATTLTSDASALRTVAAGFDAASKSAASQKGFIIIETN 257
Query: 259 FRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNA 318
+R+YAY+ S L +L LF+K+ + PN++ G ++++S+ A +GIT++QII++L +A
Sbjct: 258 YRLYAYTNSPLQIAVLSLFTKLNTRYPNMVSGRVSRDSIRTAIAHGITSDQIITYLSTHA 317
Query: 319 HPRV------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
HP++ + P +P V DQIRLW+ + R++ P ++F ++ +E YA
Sbjct: 318 HPQLVKASSASHGGPVLPPTVVDQIRLWQLENERMKAVPGFLMKDFETQKEYEGCAKYAE 377
Query: 373 DRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQ 404
+ L+W+ D+K+M V E +R++ + +
Sbjct: 378 EVGVLVWKSDAKRMFFVTRVE---QLRDYFKAK 407
>gi|390461382|ref|XP_002746360.2| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Callithrix jacchus]
Length = 1675
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 125/462 (27%), Positives = 205/462 (44%), Gaps = 87/462 (18%)
Query: 30 PFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFS 89
P L+ P L K +V +ML+++ +P + WV + + + L LR++
Sbjct: 105 PCHLSGCLQGAPILGKNWVMRMLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWH 164
Query: 90 EE--KKKETTYRLNSTFQSNLQKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWE 146
+ LN F+ NL+ L+ GG A + G + L+ YA +WE
Sbjct: 165 TQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWE 224
Query: 147 CFL---------------LQLIS------SAQAERPTNFSSS----------------MM 169
L QL+S SA+ P +S+ M+
Sbjct: 225 VVLHFMVGSPSAAVSQDLAQLLSQAGLMKSAEPGEPPCITSAGFQFLLLDTPAQLWYFML 284
Query: 170 KVFQ----RGLLIQSILRSLKFLCQGIL-EAYNLNTLSEIQRSMIKDFADLGLVKLQQGR 224
+ Q RG+ + IL L L L + Y++ +S+ + ++ + GLV Q+ R
Sbjct: 285 QYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKR 343
Query: 225 KESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRMYAY------------------ 264
K + PT+LA NLS ++ + + GF+VVETN+R+YAY
Sbjct: 344 KSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYTGEAGQRAPGRAGWGXHL 403
Query: 265 ---------------------STSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFEN 303
S S+L ++ LFS++ Y+ PN++V +T+ES+ A +
Sbjct: 404 KERFEGVWVWGWPPHPLSIPGSESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIAS 463
Query: 304 GITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDV 363
GITA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y +F S+
Sbjct: 464 GITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVD 523
Query: 364 FEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
FE +AR+ L++E+S K +VV H ++ F + Q
Sbjct: 524 FELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 565
>gi|403308524|ref|XP_003944708.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Saimiri boliviensis boliviensis]
Length = 1752
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 120/482 (24%), Positives = 209/482 (43%), Gaps = 86/482 (17%)
Query: 9 KNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVL 68
+ F ++ + + + P L+ P L K +V +ML+++ +P + WV
Sbjct: 162 QEFARILRGPESWGIGPIVWAPCHLSGCLQGAPILGKNWVMRMLFLEQPLPQAAVALWVK 221
Query: 69 PDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALPREPMPS 125
+ + + L LR++ + LN F+ NL+ L+ GG A +
Sbjct: 222 KEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRIALLGGGKAWSDDTSQL 281
Query: 126 GITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFS-----SSMMKVFQRG----- 175
G + L+ YA +WE L ++ S A + + + +MK + G
Sbjct: 282 GPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEPGEPPCI 341
Query: 176 -------LLIQSILRSLKFLCQGILEA-------------------------YNLNTLSE 203
LL+ + + F+ Q + A Y++ +S+
Sbjct: 342 TSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSD 401
Query: 204 IQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRM 261
+ ++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VVETN+R+
Sbjct: 402 SLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRL 460
Query: 262 YAY--------------------------------------STSKLHCEILRLFSKIEYQ 283
YAY S S+L ++ LFS++ Y+
Sbjct: 461 YAYTGEVGQRAPGRAGWGRGNARLEGVWVWGWPPHPLSIPGSESELQIALIALFSEMLYR 520
Query: 284 LPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESD 343
PN++V +T+ES+ A +GITA+QII FL+ AHP + + P +P + DQIRLWE +
Sbjct: 521 FPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELE 580
Query: 344 LNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRG 403
+R+ T Y +F S+ FE +AR+ L++E+S K +VV H ++ F +
Sbjct: 581 RDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKR 640
Query: 404 QN 405
Q
Sbjct: 641 QK 642
>gi|254573074|ref|XP_002493646.1| Subunit of TFIIH and nucleotide excision repair factor 3 complexes
[Komagataella pastoris GS115]
gi|238033445|emb|CAY71467.1| Subunit of TFIIH and nucleotide excision repair factor 3 complexes
[Komagataella pastoris GS115]
gi|328354526|emb|CCA40923.1| RNA polymerase II transcription factor B subunit 2 [Komagataella
pastoris CBS 7435]
Length = 547
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 129/510 (25%), Positives = 208/510 (40%), Gaps = 145/510 (28%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFT---------- 73
NKLY++ C AI R LP LAK YV +L+ + ++ + W+ PD T
Sbjct: 25 NKLYQSSITCLAIFRLLPSLAKFYVMSLLFNEHSVSYIDLTRWIRPDNMTHLVSSSTKSS 84
Query: 74 -------------KHKV----AIDRLVQLRLFSEEKKKET-----------TYRLNSTFQ 105
K+K+ + RL QL L + +K+ T +LN F+
Sbjct: 85 SSSAVTNFPGAIGKNKMYQNECLKRLKQLNLIKDVRKQWTNPNTGQLTNVVVLQLNPMFR 144
Query: 106 SNLQKHLINGGALPREPMPSGI---TARLPTLEDLEAYAIGQWECFLLQLISSAQAERPT 162
N + L G+ + + I + E L+ Y++ +WE L ++ S E P+
Sbjct: 145 KNFRNALT--GSQMSNDLNNDIEMTDVEEVSEEFLDRYSLMKWENILHFMVGSEVPELPS 202
Query: 163 -------------------------------NFSSSMMKVFQRG--------------LL 177
N MK+ Q G LL
Sbjct: 203 IGVLSLLRHSGLMDIGEENEFIATPKRFKGDNMDLKSMKITQDGFQFLLQDINAQIWQLL 262
Query: 178 IQSILRSLKFLCQ-----------GILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQG 223
+Q + S K + G LE Y + LS+ Q M++D D GL+ +
Sbjct: 263 LQYLRMSEKLMMNPVDVLNFIFMLGSLELGKQYPVTLLSDTQVIMLEDLVDYGLIYYPE- 321
Query: 224 RKESWFIPTKLATNL----------SMSLTD-----SSARKEGFVVVETNFRMYAYSTSK 268
K +F PT++AT L SMS+ + G +V+ETNF++Y Y+TS
Sbjct: 322 -KNRYFYPTRMATTLTSEKTTFKTASMSMNQVLEGGPEVKDHGSIVLETNFKLYCYTTSP 380
Query: 269 LHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVAD---- 324
L IL LF + + N++ G IT+ES+ A NGITA+QII +L+ +AH ++
Sbjct: 381 LQIAILNLFVHLRTRFANMVTGMITRESVREALRNGITADQIIKYLETHAHSQMKKLAEE 440
Query: 325 ----------------------RIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRD 362
++ +P V DQI+LW+ +++R++ +++F +
Sbjct: 441 KLLKKLEFDSNATETQQIGSQVKLEVIPPTVVDQIKLWQLEMDRLQTFAGFLFKDFANAQ 500
Query: 363 VFEAACDYARDRSGLLWEDSKKMRLVVNAE 392
FE +YA + +LW D K + V E
Sbjct: 501 EFEQLANYADEVGVMLWRDDDKRKFFVTEE 530
>gi|62088538|dbj|BAD92716.1| VARS2L protein variant [Homo sapiens]
Length = 1653
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 119/461 (25%), Positives = 202/461 (43%), Gaps = 86/461 (18%)
Query: 30 PFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFS 89
P L+ P L K +V +ML+++ +P + WV + + + L LR++
Sbjct: 85 PCHMSGCLQGAPILGKNWVMRMLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWH 144
Query: 90 EE--KKKETTYRLNSTFQSNLQKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWE 146
+ LN F+ NL+ L+ GG A + G + L+ YA +WE
Sbjct: 145 TQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWE 204
Query: 147 CFLLQLISSAQAERPTNFS-----SSMMKVFQRG------------LLIQSILRSLKFLC 189
L ++ S A + + + +MK + G LL+ + + F+
Sbjct: 205 VVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFML 264
Query: 190 QGILEA-------------------------YNLNTLSEIQRSMIKDFADLGLVKLQQGR 224
Q + A Y++ +S+ + ++ + GLV Q+ R
Sbjct: 265 QYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKR 323
Query: 225 KESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRMYAY------------------ 264
K + PT+LA NLS ++ + + GF+VVETN+R+YAY
Sbjct: 324 KSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYTGEAGQRAPGRGGWGHLK 383
Query: 265 --------------------STSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 304
S S+L ++ LFS++ Y+ PN++V +T+ES+ A +G
Sbjct: 384 EGLEGVWVWGWPPLPLSIPGSESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASG 443
Query: 305 ITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVF 364
ITA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y +F S+ F
Sbjct: 444 ITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDF 503
Query: 365 EAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
E +AR+ L++E+S K +VV H ++ F + Q
Sbjct: 504 ELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 544
>gi|194388768|dbj|BAG60352.1| unnamed protein product [Homo sapiens]
Length = 386
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 174/365 (47%), Gaps = 48/365 (13%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 17 RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 76
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 77 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 136
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA--------------------- 158
+ G + L+ YA +WE L ++ S A
Sbjct: 137 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEP 196
Query: 159 ----------------ERPTNFSSSMMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYN 197
+ P M++ Q RG+ + IL L L L + Y+
Sbjct: 197 GEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYS 256
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVV 255
+ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VV
Sbjct: 257 VEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVV 315
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 316 ETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLR 375
Query: 316 QNAHP 320
AHP
Sbjct: 376 TRAHP 380
>gi|397471696|ref|XP_003807420.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Pan paniscus]
Length = 1673
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 119/468 (25%), Positives = 202/468 (43%), Gaps = 93/468 (19%)
Query: 30 PFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFS 89
P L+ P L K +V +ML+++ +P + WV + + + L LR++
Sbjct: 98 PCHMSGCLQGAPILGKNWVMRMLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWH 157
Query: 90 EE--KKKETTYRLNSTFQSNLQKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWE 146
+ LN F+ NL+ L+ GG A + G + L+ YA +WE
Sbjct: 158 TQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWE 217
Query: 147 CFLLQLISSAQAERPTNFS-----SSMMKVFQRG------------LLIQSILRSLKFLC 189
L ++ S A + + + +MK + G LL+ + + F+
Sbjct: 218 VVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFML 277
Query: 190 QGILEA-------------------------YNLNTLSEIQRSMIKDFADLGLVKLQQGR 224
Q + A Y++ +S+ + ++ + GLV Q+ R
Sbjct: 278 QYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKR 336
Query: 225 KESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRMYAY------------------ 264
K + PT+LA NLS ++ + + GF+VVETN+R+YAY
Sbjct: 337 KSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYTGEAGQRAPGRGGWGALX 396
Query: 265 ---------------------------STSKLHCEILRLFSKIEYQLPNLIVGAITKESL 297
S S+L ++ LFS++ Y+ PN++V +T+ES+
Sbjct: 397 HFSXHLKEGLEGVWVWGCPPHPLSIPGSESELQIALIALFSEMLYRFPNMVVAQVTRESV 456
Query: 298 YNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEE 357
A +GITA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y +
Sbjct: 457 QQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQ 516
Query: 358 FPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
F S+ FE +AR+ L++E+S K +VV H ++ F + Q
Sbjct: 517 FLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 564
>gi|405952750|gb|EKC20525.1| General transcription factor IIH subunit 4 [Crassostrea gigas]
Length = 380
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 194/432 (44%), Gaps = 91/432 (21%)
Query: 5 KIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTME 64
K+ K+ + +L + L+KLY +P C A+ R
Sbjct: 7 KLECKDLHGYLKTLPSTILDKLYNHPATCLAVFR-------------------------- 40
Query: 65 EWVLPDGFTKHKVAIDRLVQLRLFSEEKKKET--TYRLNSTFQSNLQKHLINGGA---LP 119
+HK A L +LR++ E++ + + LN TF+SN++ L+ GG
Sbjct: 41 ---------EHKFAAKVLSELRVWHEQQMQGGLLGWVLNGTFRSNMKVALLGGGMDSQFT 91
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVF-QRGLLI 178
P+P A+ + L+ YA+ +WEC L ++ S + S ++ V GL+
Sbjct: 92 GGPLPPDKHAK--DVPFLDKYALERWECVLHFMVGSTEGTE--GVSKDIIDVLLNAGLMT 147
Query: 179 QSILR--------SLKFLCQGI--------------LEAYNLNTLSEIQRSMIKDFADLG 216
+ +FL I +EA ++ + + F+ LG
Sbjct: 148 MDGVDPMPSITPAGFQFLLMDIGSQVWYFMLQYLDTVEARGMDLIDCLSFLFQLSFSTLG 207
Query: 217 LVKLQQGRKESWFIPTKLATNLSMSLTD--SSARKEGFVVVETNFRMYAYSTSKLHCEIL 274
K+Q+ + PT+LA NL+ +D S + G+++VETN+R+YAY+ S L ++
Sbjct: 208 KRKIQR------YYPTRLAINLAAGQSDFTSVGKNTGYLMVETNYRVYAYTDSPLQVALV 261
Query: 275 RLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVC 334
LF ++ Y+ P VG +T+ S+ +A GITA+Q P +P V
Sbjct: 262 ALFCEMLYRFPTFSVGNLTRVSVRDALIRGITADQT----------------PVIPSTVT 305
Query: 335 DQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIH 394
DQ+RLWE + +R + Y++F S++ FE DYA+D LLW+++ K +VV H
Sbjct: 306 DQVRLWELERDRFKFMEGVLYDQFLSQNDFELLRDYAKDLGVLLWDNAIKRVMVVTKGGH 365
Query: 395 MHMREFLRGQNK 406
++ + + Q +
Sbjct: 366 DDVKRYWKRQKQ 377
>gi|365758016|gb|EHM99881.1| Tfb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 419
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 180/389 (46%), Gaps = 93/389 (23%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
N+LY +P C AI R LPPLAK ++ M++ + +P +++WV +G + + AI +
Sbjct: 23 NRLYTSPATCLAIYRILPPLAKFFIMAMVFNENEVPLLDLDKWVNSNGKLQFQDAIKSMK 82
Query: 84 QLRLFSEEKKKET-TYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAI 142
L L +K T LN TF+ +L+ L G + + + +L+ L+ Y+
Sbjct: 83 SLHLLIPDKSSGTLMINLNPTFKISLRNALTGGEV--QNSFGVVVEDNVISLDLLDEYSA 140
Query: 143 GQWECFLLQLISSAQAERPTN---------------FSSSMMKVFQRGL--LIQSI---- 181
+WE L ++ + A+ P+ S+ K+ G L+Q I
Sbjct: 141 NKWETILHFMVGTPLAKIPSEKVLNLLKHSKLMEEVNSTGEFKITNEGFQFLLQEINSQL 200
Query: 182 ----LRSLKFL---------------CQGILE---AYNLNTLSEIQRSMIKDFADLGLVK 219
L+ LK + G LE AY ++ LSE QR M++D D GLV
Sbjct: 201 WTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDALSETQRIMLQDMRDYGLV- 259
Query: 220 LQQGRKESWFIPTKLATNLS---------------------------------MSLTDSS 246
Q+ +S F PTKLA L+ S TD++
Sbjct: 260 FQKHLNDSIFYPTKLALMLTSDTKTIISASNAMDSVLRQNREEPSVNEDGANGKSTTDTT 319
Query: 247 ARKE-------------GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 293
A + G ++VETNF++Y+YS S L +L LF ++ + N+++G IT
Sbjct: 320 ASDDLNKAGSKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQIT 379
Query: 294 KESLYNAFENGITAEQIISFLQQNAHPRV 322
+ES+ NA NGITA+QII++L+ +AHP++
Sbjct: 380 RESIRNALTNGITADQIIAYLETHAHPQM 408
>gi|406604717|emb|CCH43852.1| RNA polymerase II transcription factor B subunit 2 [Wickerhamomyces
ciferrii]
Length = 488
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 114/454 (25%), Positives = 199/454 (43%), Gaps = 90/454 (19%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
++LY++P C AI R LP LAK ++ M++ + + + WV P+G A+ +
Sbjct: 23 SRLYQSPATCLAIYRLLPGLAKFFIMSMVFNEKPQAVRDFDSWVKPNGKMDLVEALRSIK 82
Query: 84 QLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPRE--PMPSGITARLPTLEDLEAYA 141
L L E +N F+ + ++++ G + + ++E L+ YA
Sbjct: 83 SLHLLKEANGIAI---MNPVFRKSF-RNVLTGNEIGNSFGVLCDTDDTHKVSVEFLDQYA 138
Query: 142 IGQWECFLLQLISSAQAERPTNFSSSMM--KVFQRGLLIQSIL---RSLKFLCQ------ 190
+WE L ++ + + P+ S++ G ++ +L +FL Q
Sbjct: 139 ANKWETILHFMVGTELEQSPSPGVLSLLTHSGLMEGKSVKDMLITNEGFQFLLQDVNAQL 198
Query: 191 ----------------------------GILE---AYNLNTLSEIQRSMIKDFADLGLVK 219
G LE Y+L+ LSE Q +M+ D D GL+
Sbjct: 199 WTLLLQYLRMAESLQMDPVDVLNFIFMLGSLELGKDYSLSALSETQVNMLGDLRDYGLI- 257
Query: 220 LQQGRKESWFIPTKLATNLSM----------------------SLTDSSARKEGFVVVET 257
Q+ F PT+LAT L+ + T ++ G +++ET
Sbjct: 258 YQRKSTSRRFYPTRLATTLTSDTTSLRSASSAMNKVIENAKDSAYTPTNIENSGTIIIET 317
Query: 258 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 317
NF++YAY+ S L IL LF ++ + NL+ G IT+ES+ A +GIT+EQIIS+L+ +
Sbjct: 318 NFKVYAYTNSPLQIAILNLFVHLKARFSNLVTGQITRESIRKALVSGITSEQIISYLESH 377
Query: 318 AHPRV-------------------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF 358
AHP++ ++I + + DQI+LW+ +L+R+ + + +F
Sbjct: 378 AHPQLRRAAEEELNKKNGFESNNHGEKIQILQPTIADQIKLWQLELDRIMSFDGYLFTDF 437
Query: 359 PSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAE 392
S ++ Y+ + LLW DS K + V E
Sbjct: 438 SSDQEYQVLSKYSEEIGVLLWNDSSKKKFFVTKE 471
>gi|195477962|ref|XP_002086438.1| GE22864 [Drosophila yakuba]
gi|194186228|gb|EDW99839.1| GE22864 [Drosophila yakuba]
Length = 241
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 124/215 (57%), Gaps = 16/215 (7%)
Query: 207 SMIKDFADLGLVKLQQGRKESWFIPTKLATNL---------SMSLTDSSARKEGFVVVET 257
+ ++ + GLV Q+ RKE F PT+LA N+ S+++ + + + G++VVET
Sbjct: 25 TFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVET 83
Query: 258 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 317
N+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q
Sbjct: 84 NYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQY 143
Query: 318 AHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 371
AHP V I S +P V DQI+LWE + NR T Y +F S F DYA
Sbjct: 144 AHPNMRLVESAIQSKSCLPPTVVDQIKLWELERNRFTYTEGVVYNQFLSHTDFVTLRDYA 203
Query: 372 RDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+ L+W++ + +VV H ++ + + +K
Sbjct: 204 QSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 238
>gi|342884444|gb|EGU84659.1| hypothetical protein FOXB_04847 [Fusarium oxysporum Fo5176]
Length = 496
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 126/483 (26%), Positives = 217/483 (44%), Gaps = 100/483 (20%)
Query: 18 LTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHK 76
L KLY+ P AI R LP LAK +V ++LY I +++WV P +
Sbjct: 18 LPGTTFRKLYQQPSTAFAIFRRMLPHLAKTFVMRILYSPKPILLSDLDDWVKPSHKRQKD 77
Query: 77 VAIDRLVQLRLFS---EEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPT 133
A+ L L + S K++ +L + F+ +L+ L GG +PS T ++P
Sbjct: 78 QALSILRVLHIVSITAPSKERPQEMQLTTNFKLSLRLALSGGGTHNSFGVPS--TLQIPP 135
Query: 134 LED---LEAYAIGQWECFLLQLISSA---QAERPTNFSSSMMKVFQRGLLIQ-------S 180
D L+ YA +WE L ++SS A + + S+ ++ G L+
Sbjct: 136 EIDIAFLDRYARKKWEDILHFVVSSVGYKSAGESSGPNKSVKELLVAGRLVDRKASGSVG 195
Query: 181 ILRS-LKFLCQ----------------------GILEAYNL------------------N 199
I ++ FL Q LEA ++ N
Sbjct: 196 ITQAGFTFLLQEANAQVWTLLLLWLEAMEVNKMAGLEATDMLSFLFVLASMELGRAYDTN 255
Query: 200 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM------------------- 240
L+E +++M+ D GL+ + K S F PT+LAT L+
Sbjct: 256 ALTEQRKNMLPSLVDFGLIYIPN-HKRSMFFPTRLATTLTSSSNSLRSISDGVAAATAAA 314
Query: 241 -----------SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIV 289
S+T ++ + G V++ETN+R+YAY+ S L +L LF+K+ + P+++
Sbjct: 315 LQPGQSGAPGGSVTAANTEQRGSVIIETNYRIYAYTQSTLQIAVLALFTKLAMRFPDMVA 374
Query: 290 GAITKESLYNAFENGITAEQIISFLQQNAHPRVA-----DRIPSVPENVCDQIRLWESDL 344
G I+++S+ A + GITAEQIIS+L +AH ++ + P +P V DQIRLW+ +
Sbjct: 375 GRISRQSIRQAIQFGITAEQIISYLSAHAHDQMHRTAALNNKPVLPPTVVDQIRLWQLEN 434
Query: 345 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRG 403
R++ T ++ F ++ +A + L+W+ D+++M A H +R++++
Sbjct: 435 ERMKTTSGFLFKSFEDDREYKDIARFAEEVGVLVWKNDARQMFF---ASKHEQIRDYMKI 491
Query: 404 QNK 406
+ K
Sbjct: 492 RKK 494
>gi|378729002|gb|EHY55461.1| transcription initiation factor TFIIH subunit H4 [Exophiala
dermatitidis NIH/UT8656]
Length = 508
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 127/481 (26%), Positives = 199/481 (41%), Gaps = 111/481 (23%)
Query: 17 SLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKH 75
+L +LY +P AI R L LAK +V ++Y+ +P K +E +V +
Sbjct: 14 TLPGTQFYRLYRSPASALAIFRKRLTSLAKSFVMMLVYMPAPVPVKQLELFVKDTSRGER 73
Query: 76 KVAIDRLVQLRLFSE-EKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSG-ITARLP- 132
+ AID L + +F + Y L F +L++ L G + G + +P
Sbjct: 74 EYAIDLLHRYHIFKDVTYNGAKAYALTPDFAKSLRRALTGAG----DSRSFGQVATNVPE 129
Query: 133 ----TLEDLEAYAIGQWECFLLQLIS-------SAQAERPTNFSSS-------------- 167
T+ L+ YA +WE L ++ S E + S
Sbjct: 130 DQKVTIAQLDEYARQRWEGILGYMVGSSSILLESGTTENQASIQPSPGVIELLKAGHLIE 189
Query: 168 MMKVFQRGLLIQSILRSLKFLCQGI----------------------------------L 193
+ + RG + F+ Q I L
Sbjct: 190 LTGTYSRGQAAKITKEGFAFVLQDINTQIWALLFLYVDNAEVFEMDKVDVLSFLFFVSSL 249
Query: 194 E---AYNLNTLSEIQRSMIKDFADLGLVK---LQQGRKESWFIPTKLA------------ 235
E AY+ L E Q + D G+V L+ G +F PT+LA
Sbjct: 250 ELGLAYSTAPLDETQSRCLSDLVSFGIVYQPLLEDGTPVDYFYPTRLATTLTSDSSTTLS 309
Query: 236 ---TNLSMSLTDSSARKEG---------FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQ 283
T L+ SL+ SA F++VETN+R+YAY++S L +L LF + +
Sbjct: 310 ATNTTLASSLSTKSAHSSSSSSAGAGKGFIIVETNYRLYAYTSSPLQIALLSLFVNLRSR 369
Query: 284 LPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP-----------RVADR---IPSV 329
PNL+ G ++K S+ A + GITA+QIIS+L +AHP R AD +P +
Sbjct: 370 HPNLVTGKMSKSSVQRAIQAGITADQIISYLTSHAHPQMRRHAQAEQARNADPNRVVPIL 429
Query: 330 PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVV 389
P + DQI LW+ + +R+ TP ++FP++ +EA C YA + L+W++ KK V
Sbjct: 430 PATILDQIHLWQLERDRMTTTPGFLLKDFPNQADYEAPCRYADEIGVLVWKNDKKRMFFV 489
Query: 390 N 390
N
Sbjct: 490 N 490
>gi|402083674|gb|EJT78692.1| RNA polymerase II transcription factor B subunit 2 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 496
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 125/493 (25%), Positives = 218/493 (44%), Gaps = 108/493 (21%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDG 71
D + + KLY+ P AI R LP LAK +V +LY+ + ++ W PD
Sbjct: 10 DYLERQSGTTFKKLYQQPSTAFAIFRRMLPSLAKTFVMALLYMPKPLSLADLDTWAKPDA 69
Query: 72 FTK--HKVAIDRLVQLRLF---SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSG 126
+ H +AI R++ + L S+EK +E + L F+ +L+ L GG G
Sbjct: 70 RKQKDHALAILRVLHIVLITAPSKEKSQEVS--LTPNFKKSLRLALEGGGT---SHNTFG 124
Query: 127 ITARLPTLED-----LEAYAIGQWECFLLQLISSAQ----AERPTN--------FSSSMM 169
+ + LP + L+ +A +W+ L +++S + A+RP+ ++
Sbjct: 125 VPSSLPVPPNVDIPFLDKFARTRWDAILHYVVNSVEGDEFAQRPSKRLHSGGSKLQDTVK 184
Query: 170 KVFQRGLLIQ------SILRS-LKFLCQ-------------------------------- 190
++ G L++ SI ++ FL Q
Sbjct: 185 ELLVAGGLVERRGGSISISKTGFTFLLQESNAQVWTLLLQWLEAVNAAGGDHSAMAVDML 244
Query: 191 ------GILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM- 240
G LE AY+ LSE +R+M+ D GLV + G +F PT+LAT L+
Sbjct: 245 SFLFMLGTLELGQAYDTEELSEQRRNMLPSLVDFGLVYIPPGNTSQYF-PTRLATTLTSG 303
Query: 241 ---------------------SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSK 279
S S +G +++ETN+R+YAY+++ L IL LF++
Sbjct: 304 SSALRSASSALAAATAEGPNASGGGQSEAAKGSIIIETNYRLYAYTSTPLQIAILGLFAE 363
Query: 280 IEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP---RVAD--RIPSVPENVC 334
+ ++ ++ G + +ES+ A GITA+Q+I +L +AH R A + P +P V
Sbjct: 364 LRFRFAGMVTGRLDRESIKRAISYGITADQVIEYLAAHAHEQMHRTATLRKKPVLPPTVV 423
Query: 335 DQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLW-EDSKKMRLVVNAEI 393
DQIRLW+ + R+++ + +F S+ ++ YA + LLW D++++ +
Sbjct: 424 DQIRLWQLETERMKIMRGFLFRDFDSQAEYDDLAKYADEIGVLLWRSDARQLFFASKVD- 482
Query: 394 HMHMREFLRGQNK 406
+ FL+ + K
Sbjct: 483 --QLSVFLKARKK 493
>gi|16198089|gb|AAL13841.1| LD30622p [Drosophila melanogaster]
Length = 350
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 134/242 (55%), Gaps = 18/242 (7%)
Query: 180 SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL- 238
S+L L F G Y+ ++ + ++ + GLV Q+ RKE F PT+LA N+
Sbjct: 109 SMLFQLSFSTLG--RDYSSEGMNSQMLTFLQHLREFGLV-FQRKRKEGRFYPTRLALNVT 165
Query: 239 --------SMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG 290
S+++ + + + G++VVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG
Sbjct: 166 SKEAAATASVAMDEEATQDCGYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVG 225
Query: 291 AITKESLYNAFENGITAEQIISFLQQNAHPR---VADRIPS---VPENVCDQIRLWESDL 344
+T++S+ A GITAEQI+S+L+Q AHP V I S +P V DQI+LWE +
Sbjct: 226 VLTRDSVRQALRGGITAEQIVSYLEQYAHPNMRMVESAIHSKSCLPPTVVDQIKLWELER 285
Query: 345 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
NR T Y +F S F DYA+ L+W++ + +VV H ++ + +
Sbjct: 286 NRFTYTEGVLYNQFLSHTDFVTLRDYAQSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKY 345
Query: 405 NK 406
+K
Sbjct: 346 SK 347
>gi|302495702|ref|XP_003009866.1| hypothetical protein ARB_03925 [Arthroderma benhamiae CBS 112371]
gi|291173385|gb|EFE29221.1| hypothetical protein ARB_03925 [Arthroderma benhamiae CBS 112371]
Length = 386
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 130/241 (53%), Gaps = 33/241 (13%)
Query: 194 EAYNLNTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPTKLATNL---SMSLTD----- 244
++Y L+ Q + D D G+V + + F PT+LAT L S++++
Sbjct: 144 QSYEKKDLTPTQLRTLADLTDFGIVYQHTPASGSTRFYPTRLATTLTSDSLAMSGPISGE 203
Query: 245 ------------SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 292
S GF++VETN+R+YAY++S L ++ LF+ ++++ PNLI G I
Sbjct: 204 PAVPTTTAGTTTSGDAGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKI 263
Query: 293 TKESLYNAFENGITAEQIISFLQQNAHPRVADRIPS--------VPENVCDQIRLWESDL 344
T++S+ A E GITA+QIIS+L +AHP++ S +P V DQIRLW+ +
Sbjct: 264 TRQSVRRAIEMGITADQIISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQLER 323
Query: 345 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRG 403
+R++ T ++EF + FEA C YA + L+W+ DS++M V H + FLR
Sbjct: 324 DRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HEQVAAFLRS 380
Query: 404 Q 404
+
Sbjct: 381 R 381
>gi|425777809|gb|EKV15965.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Penicillium digitatum PHI26]
gi|425782577|gb|EKV20476.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Penicillium digitatum Pd1]
Length = 382
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 132/239 (55%), Gaps = 37/239 (15%)
Query: 196 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA-------- 247
Y+ + ++ Q + D AD G+V Q+ + F PT+LAT L+ +DSSA
Sbjct: 146 YDKSHMTSNQLRTLADLADFGIV-YQEDADATHFYPTRLATTLT---SDSSALSNPVTGS 201
Query: 248 ----------RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 297
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G IT++S+
Sbjct: 202 LTGPVGPSGGSGSGFIIIETNYRLYAYTSSPLQISLISLFTNLKYRFPNLVTGKITRQSV 261
Query: 298 YNAFENGITAEQIISFLQQNAHPRV---------ADRIPS--VPENVCDQIRLWESDLNR 346
A E GITA+QIIS+L +AHP++ IP+ +P V DQIRLW+ + +R
Sbjct: 262 RRAIEMGITADQIISYLLSHAHPQLRKHSAAQSNGKGIPASVLPPTVTDQIRLWQLERDR 321
Query: 347 VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQ 404
+ T +++F S ++A C YA + L+W+ D K+M V H + FLR Q
Sbjct: 322 LRATAGFLFKDFTSLAEYQAPCQYAAEIGVLVWKSDRKRMFFVTR---HEQVAAFLRSQ 377
>gi|302667863|ref|XP_003025510.1| hypothetical protein TRV_00272 [Trichophyton verrucosum HKI 0517]
gi|291189624|gb|EFE44899.1| hypothetical protein TRV_00272 [Trichophyton verrucosum HKI 0517]
Length = 386
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 130/241 (53%), Gaps = 33/241 (13%)
Query: 194 EAYNLNTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPTKLATNL---SMSLTD----- 244
++Y L+ Q + D D G+V + + F PT+LAT L S++++
Sbjct: 144 QSYEKKDLTPTQLRTLADLTDFGIVYQHTPASGSTRFYPTRLATTLTSDSLAMSGPISGE 203
Query: 245 ------------SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 292
S GF++VETN+R+YAY++S L ++ LF+ ++++ PNLI G I
Sbjct: 204 PAVPTTTAGTTTSGDAGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKI 263
Query: 293 TKESLYNAFENGITAEQIISFLQQNAHPRVADRIPS--------VPENVCDQIRLWESDL 344
T++S+ A E GITA+QIIS+L +AHP++ S +P V DQIRLW+ +
Sbjct: 264 TRQSVRRAIEMGITADQIISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQLER 323
Query: 345 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRG 403
+R++ T ++EF + FEA C YA + L+W+ DS++M V H + FLR
Sbjct: 324 DRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HEQVAAFLRS 380
Query: 404 Q 404
+
Sbjct: 381 R 381
>gi|171681598|ref|XP_001905742.1| hypothetical protein [Podospora anserina S mat+]
gi|170940758|emb|CAP66407.1| unnamed protein product [Podospora anserina S mat+]
Length = 540
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 135/245 (55%), Gaps = 36/245 (14%)
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL-------SMSLTDSSA 247
AY+ + L+E +++M+ AD GL+ + + R + ++ PT+LAT L S+S + +A
Sbjct: 297 AYDTSALTETRKNMLPALADFGLIYIDRDRPQQYY-PTRLATTLTSLSTMRSVSASIDAA 355
Query: 248 RKE---------------------GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPN 286
K+ G +VVETN+R+YAY++S L IL+LF ++ + PN
Sbjct: 356 TKKTPGDAGSLGADSTPTAPADENGGIVVETNYRIYAYTSSPLQIAILKLFCRLHMRFPN 415
Query: 287 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRIPSVPENVCDQIRLWE 341
++ +T+ES+ A + GITA QII +L +AHP++ A +P V DQIRLW+
Sbjct: 416 MVTARLTRESVQEAIKEGITANQIIDYLVAHAHPQMRRAAAARGTTVIPPTVMDQIRLWQ 475
Query: 342 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 401
+ R++ TP +++F S + + +YA + L+W+D +K V+ +REFL
Sbjct: 476 LESQRMQKTPGFQFKDFESVEEYRQLAEYATEIGVLVWKDDRKGTFFVSKV--EQIREFL 533
Query: 402 RGQNK 406
+ + K
Sbjct: 534 KARKK 538
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 8/128 (6%)
Query: 30 PFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLF- 88
P + + P AK YV +LY + +E W P+G AI RL L +
Sbjct: 58 PSLRTTVTNGHAPTAKVYVQALLYSPTPLTTNDIELWTRPEGKGTSNRAIARLRSLHIAQ 117
Query: 89 ---SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQW 145
S KK +L + F+ +L+ L GG+ +PS LPT + + QW
Sbjct: 118 LSQSTRAKKAQDIQLTANFKKSLRLALEGGGSHNSFGVPS----TLPTDPKIHIQYLDQW 173
Query: 146 ECFLLQLI 153
+ Q I
Sbjct: 174 AGRIWQDI 181
>gi|212535856|ref|XP_002148084.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
gi|210070483|gb|EEA24573.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
Length = 422
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 31/230 (13%)
Query: 194 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKES-WFIPTKLATNL-------------S 239
++Y L+ Q + D D G++ E+ F PT+LAT L S
Sbjct: 182 QSYEKRHLTPDQLRALADLTDFGIIYQHAPASEADRFYPTRLATTLTSDSSALSNTMSSS 241
Query: 240 MSLTDSSARKE---GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 296
+S ++A E GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G IT++S
Sbjct: 242 LSAQTNAATGEPGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKITRQS 301
Query: 297 LYNAFENGITAEQIISFLQQNAHPRVADR-----------IPS--VPENVCDQIRLWESD 343
+ A E GITA+QIIS+L +AHP++ IP +P V DQIRLW+ +
Sbjct: 302 IRRAVEMGITADQIISYLSTHAHPQMRKEGAVKSTSNTAGIPRSVLPPTVVDQIRLWQLE 361
Query: 344 LNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAE 392
+R++ TP ++EF S +E C YA + L+W+ D K+M V E
Sbjct: 362 RDRIKATPGFLFKEFASLAEYEGPCRYAEEIGVLVWKSDRKRMFFVTRYE 411
>gi|323306981|gb|EGA60265.1| Tfb2p [Saccharomyces cerevisiae FostersO]
Length = 448
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/442 (26%), Positives = 190/442 (42%), Gaps = 111/442 (25%)
Query: 51 MLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKET-TYRLNSTFQSNLQ 109
M++ + +P +++WV +G + + AI + L L K T LN TF+ +L+
Sbjct: 1 MVFNENEVPLLDLDKWVNSNGKLQFQNAIKSMKSLHLLIPNKSSGTLMINLNPTFKISLR 60
Query: 110 KHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTN------ 163
L G + + + +L+ L+ Y+ +WE L ++ + A+ P+
Sbjct: 61 NALTGGEV--QNSFGVVVEENVVSLDLLDEYSANKWETILHFMVGTPLAKIPSEKVLNLL 118
Query: 164 ---------FSSSMMKVFQRGL--LIQSI--------LRSLKFL---------------C 189
S+ K+ G L+Q I L+ LK +
Sbjct: 119 KHSKLMEEVNSTGEFKITNEGFQFLLQEINSQLWTLLLQYLKMIETSKMDLVDVLHFIFM 178
Query: 190 QGILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS------- 239
G LE AY ++ LSE QR M++D D GLV Q+ +S F PTKLA L+
Sbjct: 179 LGALEVGKAYKIDALSETQRIMLQDMRDYGLV-FQKHSNDSIFYPTKLALMLTSDTKTIR 237
Query: 240 --------------------------MSLTDSSARKE-------------GFVVVETNFR 260
S TD + + G ++VETNF+
Sbjct: 238 SASNAMDSVLRQNREEPSVNEDGANGKSTTDITTSDDLNKAGLKNQDIPDGSLIVETNFK 297
Query: 261 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 320
+Y+YS S L +L LF ++ + N+++G IT+ES+ A NGITA+QII++L+ +AHP
Sbjct: 298 IYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQIIAYLETHAHP 357
Query: 321 RV------------------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRD 362
++ + + +P V DQIRLW+ +L+RV Y +F +
Sbjct: 358 QMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQ 417
Query: 363 VFEAACDYARDRSGLLWEDSKK 384
+ YA+D LLW+D K
Sbjct: 418 EYNLLSKYAQDIGVLLWKDDXK 439
>gi|346972761|gb|EGY16213.1| RNA polymerase II transcription factor B subunit 2 [Verticillium
dahliae VdLs.17]
Length = 476
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 126/476 (26%), Positives = 210/476 (44%), Gaps = 95/476 (19%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDG 71
D + L KLY NP I R L PLAK +V +LY+ G IP +E V P+
Sbjct: 13 DYLEKLPGTTFRKLYLNPSTALCISRRMLSPLAKTFVTMLLYLPGPIPIADLEARVKPE- 71
Query: 72 FTKHKVAIDR-LVQLR------LFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMP 124
+K A D L QLR + + +L + F + ++ L GA P
Sbjct: 72 ---YKRAKDHALAQLRSLHMLQMSVPTQGAPQMIQLTANFSKSYREALEGNGA----PGS 124
Query: 125 SGITARLP-----TLEDLEAYAIGQWECFLLQLISSA-----QAERPTNFSSSMMKVFQR 174
G+ + P T+E +E +A +W+ L +++S + P N S+ ++
Sbjct: 125 FGVISPHPRSPEITIESIEKHARQKWDAILHYIVNSVTPGFVDSGGPKN---SVKELLLA 181
Query: 175 GLLIQ------SILRS----------------------------------LKFLCQ-GIL 193
G L++ +I ++ L FL Q IL
Sbjct: 182 GQLVKRQGGSTTITQAGFTFLLQEENAQVWTLLLLWLDATDQQTAKHTDMLSFLFQLSIL 241
Query: 194 E---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIP--TKLATNLSM---SLTDS 245
E Y+ LS+ ++ M+ D GLV + + +F+ + TN+S +LTD
Sbjct: 242 ELDEVYDTEALSKERQDMLPSLMDFGLVYIPSHKPFQYFVTPQARALTNVSTATRTLTDG 301
Query: 246 ----------SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 295
+ ++VETN+R+YAY+TS+L +L LF + + P ++ G +T++
Sbjct: 302 MNALSQPQGGPGDQTNGIIVETNYRVYAYTTSQLQIAVLSLFCHLSVKFPGMVSGRLTRQ 361
Query: 296 SLYNAFENGITAEQIISFLQQNAHPRV-----ADRIPSVPENVCDQIRLWESDLNRVEMT 350
S+ A + GITA+QIIS+L +AH ++ AD P +P V DQIRLW+ + R++ T
Sbjct: 362 SVRQAIDFGITADQIISYLAAHAHEQMHRQAAADGKPVLPPTVVDQIRLWQLENERMKTT 421
Query: 351 PAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+ +F + +A + L W + +K A H +R++L+ + K
Sbjct: 422 SGFLFRDFDDDAEYRDIARFADEIGVLAWRNDRKRMFF--ASKHEQIRDYLKLRKK 475
>gi|302405781|ref|XP_003000727.1| RNA polymerase II transcription factor B subunit 2 [Verticillium
albo-atrum VaMs.102]
gi|261360684|gb|EEY23112.1| RNA polymerase II transcription factor B subunit 2 [Verticillium
albo-atrum VaMs.102]
Length = 476
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 126/476 (26%), Positives = 210/476 (44%), Gaps = 95/476 (19%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDG 71
D + L KLY NP I R L PLAK +V +LY+ G IP +E V P+
Sbjct: 13 DYLEKLPGTTFRKLYLNPSTALCISRRMLSPLAKTFVTMLLYLPGPIPIADLEARVKPE- 71
Query: 72 FTKHKVAIDR-LVQLR------LFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMP 124
+K A D L QLR + + +L + F + ++ L GA P
Sbjct: 72 ---YKRAKDHALAQLRSLHMLQMSVPTQGAPQMIQLTANFSKSYREALEGNGA----PGS 124
Query: 125 SGITARLP-----TLEDLEAYAIGQWECFLLQLISSA-----QAERPTNFSSSMMKVFQR 174
G+ + P T+E +E +A +W+ L +++S + P N S+ ++
Sbjct: 125 FGVISPHPRSPEITIESIEKHARQKWDAILHYIVNSVTPGFVDSGGPKN---SVKELLLA 181
Query: 175 GLLIQ------SILRS----------------------------------LKFLCQ-GIL 193
G L++ +I ++ L FL Q IL
Sbjct: 182 GQLVKRQGGSTTITQAGFTFLLQEENAQVWTLLLLWLDATDQQTAKHTDMLSFLFQLSIL 241
Query: 194 E---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIP--TKLATNLSM---SLTDS 245
E Y+ LS+ ++ M+ D GLV + + +F+ + TN+S +LTD
Sbjct: 242 ELDEVYDTEALSKERQDMLPSLMDFGLVYIPSHKPFQYFVTPQARALTNVSTATRTLTDG 301
Query: 246 ----------SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 295
+ ++VETN+R+YAY+TS+L +L LF + + P ++ G +T++
Sbjct: 302 MNALSQSQGGPGDQTNGIIVETNYRVYAYTTSQLQIAVLSLFCHLSVKFPGMVSGRLTRQ 361
Query: 296 SLYNAFENGITAEQIISFLQQNAHPRV-----ADRIPSVPENVCDQIRLWESDLNRVEMT 350
S+ A + GITA+QIIS+L +AH ++ AD P +P V DQIRLW+ + R++ T
Sbjct: 362 SVRQAIDFGITADQIISYLAAHAHEQMHRQAAADGKPVLPPTVVDQIRLWQLENERMKTT 421
Query: 351 PAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+ +F + +A + L W + +K A H +R++L+ + K
Sbjct: 422 SGFLFRDFDDDAEYRDIARFADEIGVLAWRNDRKRMFF--ASKHEQIRDYLKLRKK 475
>gi|159474228|ref|XP_001695231.1| predicted protein [Chlamydomonas reinhardtii]
gi|158276165|gb|EDP01939.1| predicted protein [Chlamydomonas reinhardtii]
Length = 435
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 89/139 (64%)
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
+ FV+VE+N+R+Y Y+ S + +L LF K E LPNL VGAI ++S+ A GITA++
Sbjct: 297 DAFVIVESNYRVYVYTRSPVTIAVLELFVKREALLPNLFVGAIRRDSILAALARGITADE 356
Query: 310 IISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 369
++++L HP +A R P VPE V DQIRLWE+ +NR++ PA YE SR ++E A
Sbjct: 357 LVAYLSARPHPSIAARCPVVPEVVSDQIRLWEASMNRLQAHPAVLYENMESRQLYERAVA 416
Query: 370 YARDRSGLLWEDSKKMRLV 388
AR L WED +MR V
Sbjct: 417 AARAAGTLQWEDGARMRFV 435
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 11/156 (7%)
Query: 10 NFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLP 69
+F ++ L LY +P+ C A+ R+LPPLA+ YV ++L++ PA ++ W
Sbjct: 2 DFAAYISGLPGPKRGALYRSPWTCLAVFRNLPPLAQVYVMRLLFVPSPFPADFVDSWAAK 61
Query: 70 DGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALP-------REP 122
+ HK A+ L L + +EE+ + Q ++ G P R
Sbjct: 62 GAASGHKAALSALRGLDVLTEERGRSRA----RAGQGRGRRATGQGPKGPVELSQLMRGD 117
Query: 123 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA 158
+P+ + P+LE+L +A+GQWE L L+ S+++
Sbjct: 118 VPAAAASCCPSLEELGEWAVGQWEALQLYLLGSSRS 153
>gi|76154655|gb|AAX26095.2| SJCHGC05044 protein [Schistosoma japonicum]
Length = 214
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 96/158 (60%)
Query: 245 SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 304
SS+ G++++ETNFR+YAY+ S L +L LFSKI + PNL+V IT++S+ A G
Sbjct: 52 SSSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITRDSVREALIRG 111
Query: 305 ITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVF 364
ITA QI+SFL NAHP + P +P + DQIRLWE + +R YE F F
Sbjct: 112 ITANQILSFLTSNAHPDMLLSNPILPPTLTDQIRLWELERDRFVFQEGCLYEHFSRNTDF 171
Query: 365 EAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
E DYA++ LLWE+ ++ +VV+ H +R+F +
Sbjct: 172 ELVRDYAKNIGVLLWENPERRLMVVSKSGHEDVRKFWK 209
>gi|402592023|gb|EJW85952.1| transcription factor Tfb2 family protein [Wuchereria bancrofti]
Length = 470
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 122/462 (26%), Positives = 199/462 (43%), Gaps = 78/462 (16%)
Query: 11 FMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
++ ++S LNKLY P + AI R LP L+++ + +ML++ G+ W P+
Sbjct: 9 LLEYLSSRATDQLNKLYSYPAVSFAIFRLLPELSQQLILKMLWLSGSNRNCGWRAWSAPN 68
Query: 71 ---GFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGI 127
H A+ +L ++ + EE YR ++ L+ I G +
Sbjct: 69 FEAAVINHISALKKL-KIIIGDEEIMINPVYR-----RAYLRATRIGLGKASELSVVKDC 122
Query: 128 --TARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQS----- 180
R +DL A+ +WEC L L +Q + S + ++F+ L S
Sbjct: 123 DEKTRKSANKDLGKKAVERWECILHYLALPSQ-KSEQGVSGTTKRLFRSAGLTSSGNDDG 181
Query: 181 -------------------------------------ILRSLKFLCQGILEA-------Y 196
I++ L FL + + ++
Sbjct: 182 DIEITSAGFQFLLLNRPEQIWTYLLHYFHMQEVAGIDIIKELDFLFKVVNDSDKERPAGS 241
Query: 197 NLNTLSEIQRSMIKDF----ADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE-- 250
+ E IKDF +LGLV +++ RK+ F T L +L+ S A E
Sbjct: 242 RAFVIDENWPETIKDFLIHLRELGLVFIRK-RKDGVFFLTPLLNHLTGISNTSEASMENR 300
Query: 251 ---GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITA 307
GFV+VETN+R+YAY+ S L IL F+++ Y+ ++ VG +++E++ AF+ GITA
Sbjct: 301 NQHGFVIVETNYRVYAYTDSNLQLAILSTFTEMLYRFNDMSVGVLSREAVRRAFQVGITA 360
Query: 308 EQIISFLQQNAHP-------RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPS 360
QII+FL NAHP I SVP V DQI+LWE + R+ A Y F S
Sbjct: 361 AQIIAFLSTNAHPITYAVTTEYGRMIQSVPITVADQIQLWEDERRRLTFCNATVYSSFES 420
Query: 361 RDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+ Y ++ LLW + +V+ E H +++ + +
Sbjct: 421 EKEYFGLKGYVISQNILLWCHDVQRLMVITEEGHENVKAWWK 462
>gi|398406290|ref|XP_003854611.1| hypothetical protein MYCGRDRAFT_69317 [Zymoseptoria tritici IPO323]
gi|339474494|gb|EGP89587.1| hypothetical protein MYCGRDRAFT_69317 [Zymoseptoria tritici IPO323]
Length = 493
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 121/449 (26%), Positives = 194/449 (43%), Gaps = 93/449 (20%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEW 66
A +D + SL KLY P A+ R LP LAK V MLY+ G + A +E W
Sbjct: 6 ATTALDYLESLPGLTFAKLYAQPSTALAVFRRMLPHLAKTVVMSMLYLPGPMRAADLEAW 65
Query: 67 VLPD--GFTKHKVAIDRLVQLRLFSEEKKKETT---YRLNSTFQSNLQKHLINGGALPRE 121
D + + ++ LV+L++ EE+ YRL+ F L+ L GA+ +
Sbjct: 66 FKSDVQSSQERERSVSVLVRLKVLVEEQAGGGAGLQYRLSEAFAKGLRCALT--GAVGKG 123
Query: 122 PMPSG---ITARLPTLED-----LEAYAIGQWECFLLQLISSAQAERPTNF--SSSMMKV 171
G + ED L+ +A QWE L ++ SA + + S+ ++
Sbjct: 124 DAGKGSFGVACSAEKDEDVNVKFLDDFARRQWEAILYYVVGSANSGLSGDLEISAGTKRL 183
Query: 172 FQRGLLIQ------------------------------------------------SILR 183
Q+G +Q S L
Sbjct: 184 LQQGNFVQIKSGGKQRLITQAGFTFLLEEVNAQVWSLAVVYLRVCEDLQMDPVDVLSFLF 243
Query: 184 SLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT 243
+L L GI Y+ + L+ Q+ M+ D D GL+ +++ PT+LAT L+ +
Sbjct: 244 TLGSLELGI--PYSTSNLTLTQQHMLDDLQDFGLIYRSSPTATAYY-PTRLATTLT---S 297
Query: 244 DSSA----------------RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 287
D+ A ++G++++ETN+R+YAY++S L IL LFS + + PNL
Sbjct: 298 DAPALPNNTSSTTTTAATESNEKGYIILETNYRLYAYTSSPLQISILSLFSTLHTRYPNL 357
Query: 288 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR-----IPSVPENVCDQIRLWES 342
I ITK S+ +A IT++QII++L +AHP + + P +P V DQIRLW+
Sbjct: 358 ITAKITKSSIASAISQSITSDQIITYLSTHAHPVLRRQAAIMSAPILPPTVVDQIRLWQI 417
Query: 343 DLNRVEMTPAHYYEEFPSRDVFEAACDYA 371
+ R+ Y + + + A +YA
Sbjct: 418 EGERMTTWKGFYIRDVGGWEEYVKAVEYA 446
>gi|164425579|ref|XP_960485.2| hypothetical protein NCU05523 [Neurospora crassa OR74A]
gi|157070982|gb|EAA31249.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 475
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 130/251 (51%), Gaps = 43/251 (17%)
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----------SMSLTD 244
AY+ + L+E +R+M+ D GL+ + ++ F PT+LAT L S + T
Sbjct: 227 AYDTSALTETRRNMLPSLVDFGLIYFPRDTRQ--FFPTRLATTLTSTASALRTVSSAFTA 284
Query: 245 SSARKEG------------------------FVVVETNFRMYAYSTSKLHCEILRLFSKI 280
++A G +++ETN+R+YAY+TS L +L LF ++
Sbjct: 285 ATANPSGEPGTTTSTSGGPAATPDKTQTAAKGIIIETNYRIYAYTTSPLQIAVLALFCQL 344
Query: 281 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI-----PSVPENVCD 335
+ PN++ G +T++S+ A GITA+QIIS+L +AH ++ P +P V D
Sbjct: 345 NMRFPNMVSGRLTRDSIRQAIGFGITADQIISYLHAHAHQQMVREATVTGKPVLPPTVVD 404
Query: 336 QIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHM 395
QIRLW+ + R++ T +++F S + + A YA + L+W++ K R + A H
Sbjct: 405 QIRLWQLENERMQTTAGFLFKDFESTEEYAALSRYAEEIGVLVWKNDK--RQLFFASKHE 462
Query: 396 HMREFLRGQNK 406
+R++L+ + K
Sbjct: 463 QLRDYLKSRKK 473
>gi|336466164|gb|EGO54329.1| hypothetical protein NEUTE1DRAFT_87562 [Neurospora tetrasperma FGSC
2508]
gi|350286986|gb|EGZ68233.1| transcription factor Tfb2 [Neurospora tetrasperma FGSC 2509]
Length = 475
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 130/251 (51%), Gaps = 43/251 (17%)
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----------SMSLTD 244
AY+ + L+E +R+M+ D GL+ + ++ F PT+LAT L S + T
Sbjct: 227 AYDTSALTETRRNMLPSLVDFGLIYFPRDTRQ--FFPTRLATTLTSTASALRTVSSAFTA 284
Query: 245 SSARKEG------------------------FVVVETNFRMYAYSTSKLHCEILRLFSKI 280
++A G +++ETN+R+YAY+TS L +L LF ++
Sbjct: 285 ATANPSGEPGTTTSTSGGPAATPDKTQTAAKGIIIETNYRIYAYTTSPLQIAVLALFCQL 344
Query: 281 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI-----PSVPENVCD 335
+ PN++ G +T++S+ A GITA+QIIS+L +AH ++ P +P V D
Sbjct: 345 NMRFPNMVSGRLTRDSIRQAIGFGITADQIISYLHAHAHQQMVREATVTGKPVLPPTVVD 404
Query: 336 QIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHM 395
QIRLW+ + R++ T +++F S + + A YA + L+W++ K R + A H
Sbjct: 405 QIRLWQLENERMQTTAGFLFKDFESTEEYAALSRYAEEIGVLVWKNDK--RQLFFASKHE 462
Query: 396 HMREFLRGQNK 406
+R++L+ + K
Sbjct: 463 QLRDYLKSRKK 473
>gi|320587960|gb|EFX00435.1| tfiih and nucleotide excision repair factor 3 complexes subunit
[Grosmannia clavigera kw1407]
Length = 518
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 122/498 (24%), Positives = 212/498 (42%), Gaps = 124/498 (24%)
Query: 25 KLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAID--- 80
+LY+ P AI R LP LAK +V +LY+DG + T++ V+P+ + A+
Sbjct: 25 RLYQQPSTTLAIFRRMLPSLAKSFVRMLLYMDGPLLLDTLDTMVVPEAKRERDQALSILR 84
Query: 81 --RLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPS--GITARLPTLED 136
+VQ+ ++ +E L + F+++ + L GG+ +PS ++A T
Sbjct: 85 ALHIVQITTAMRDRPQEIM--LTANFKNSFRLALEGGGSQNSFGVPSEKPVSAETDT-AF 141
Query: 137 LEAYAIGQWECFLLQLISSA--------QAERPTNFSSSMMKVFQRGLLIQS-------- 180
L+ +A +WE L +++S ++ P N ++ ++ G L++S
Sbjct: 142 LDRFARRKWEDILHYVVNSVGLPSGPGHDSQGPKN---TVKELLLAGHLVESRPGRPGGV 198
Query: 181 --ILRSLKFLCQGI-----------LEA--------------------YNLNTL------ 201
FL Q LEA + L+TL
Sbjct: 199 GITQTGFTFLLQAANAQVWTLLLQWLEAVDQQRQAGGAVDSVDMLSFLFMLSTLELGRAY 258
Query: 202 -----SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS----------- 245
+E +R+M+ D GL+ + + S + PT+LAT L+ S +
Sbjct: 259 DTNALTEARRNMLPSLMDFGLIYIPPHDRASQYFPTRLATTLTSSGAAALRSLSTGFAAA 318
Query: 246 --------------------------------SARKEGFVVVETNFRMYAYSTSKLHCEI 273
+ G V++ETNFR+YAY+ S L +
Sbjct: 319 SANSTAAAGLPGTGTGSNNNHVGAASTANSAATTEGRGSVILETNFRLYAYTASPLQIAV 378
Query: 274 LRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRIPS 328
L LFSK+ + P ++ G +T++S+ A GIT++QIIS+L NAH ++ A+ P
Sbjct: 379 LALFSKLSQRFPGMVAGKLTRDSVRRAISYGITSDQIISYLAANAHEQMHKYAAANHRPV 438
Query: 329 VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLV 388
+P V DQIRLWE + R++ +++F S ++ YA + L++ + KK
Sbjct: 439 LPPTVVDQIRLWELENERMKSHKGFLFKDFDSAKEYDMLAQYADEIGVLVYRNDKKRHFF 498
Query: 389 VNAEIHMHMREFLRGQNK 406
V H + +L+ + K
Sbjct: 499 VTK--HEQLVTYLKARKK 514
>gi|340939354|gb|EGS19976.1| RNA polymerase II transcription factor B subunit 2-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 514
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 37/244 (15%)
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT----------- 243
AY+ + LSE +R+M+ D GL+ + + +F PT+LAT L+ S +
Sbjct: 274 AYDTDALSETRRNMLPALVDFGLIYIPREDTRQYF-PTRLATTLTSSASALRSVSSGFTA 332
Query: 244 ---------------DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI 288
D SA K G +++ETN+R+YAY++S L +L LF+ + + ++
Sbjct: 333 ATNNTANDASSLGGADPSAHK-GSIIIETNYRLYAYTSSPLQIAVLALFTHLNMRFAGMV 391
Query: 289 VGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRIPSVPENVCDQIRLWESD 343
G +T+ES+ A GITA+QIIS+L +AH ++ A P +P V DQIRLW+ +
Sbjct: 392 TGRLTRESIRRAISFGITADQIISYLASHAHEQMVRAAAAAGRPVLPPTVVDQIRLWQLE 451
Query: 344 LNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLW-EDSKKMRLVVNAEIHMHMREFLR 402
R+ +P +++F + + + A YA + L+W D K+M E +R++L+
Sbjct: 452 NERMRTSPGFLFKDFENVEEYMALAGYAEEIGVLVWRSDRKRMFFASKFE---QLRDYLK 508
Query: 403 GQNK 406
+ K
Sbjct: 509 SRKK 512
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDG 71
D + L KLY+ P AI R LPPLAK +V +LY+ + ++ WV P+
Sbjct: 14 DYLEKLPGTTFRKLYQQPSSAFAIFRRMLPPLAKVFVQALLYMPQPMLLSDLDVWVRPEA 73
Query: 72 FTKHKVAIDRLVQLRLFS---EEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGIT 128
A+ L L + K + +L + F+++L+ L G A +PS +
Sbjct: 74 KMHRDRALSILRSLHIVQITPPGKDRPQEVQLTTNFRNSLRLALEGGAAHNSFGVPSSLP 133
Query: 129 ARLPTLED--LEAYAIGQWECFLLQLISS 155
P ++ L+ YA +WE L ++SS
Sbjct: 134 VD-PRIDIAFLDNYARKKWEDILHYVVSS 161
>gi|324512881|gb|ADY45318.1| General transcription factor IIH subunit 4 [Ascaris suum]
Length = 481
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 115/207 (55%), Gaps = 13/207 (6%)
Query: 200 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE-----GFVV 254
+ SE + + +LGLV +++ RK+ +F T L +L++S + +A E G+++
Sbjct: 262 SWSETITNFLMHLRELGLVFIRK-RKDGYFFITPLFAHLTVSSSSETAVAEKRTHSGYII 320
Query: 255 VETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFL 314
VETN+R+YAY+ S L IL F+++ Y+ ++ VG +T++S+ A + GITA QIISFL
Sbjct: 321 VETNYRVYAYTDSSLQLAILSTFTEMLYRFNDMSVGMLTRDSVRRALQVGITASQIISFL 380
Query: 315 QQNAHPRVA-------DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAA 367
+ NAHP I VP V DQIRLWE + +R+ + Y F S +
Sbjct: 381 RANAHPETVAAANASPGVIHCVPVTVADQIRLWEDERHRLVFFDSALYSTFESEREYVGV 440
Query: 368 CDYARDRSGLLWEDSKKMRLVVNAEIH 394
+Y R + LLW D + +VV E H
Sbjct: 441 KEYTRSQDILLWFDDVQRLVVVTEEGH 467
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 14/144 (9%)
Query: 14 MVASLTARD---LNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
++ L RD L+ LYE+P AI R+LP ++++ + ++L++ + + WV +
Sbjct: 8 LLGYLVKRDREQLDTLYESPGAVFAIFRALPDVSQQCILKVLWLQEGVQPSLWQSWVKHE 67
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGIT-- 128
+ + D L +L + E K++ T LN F+ + + + G L R +T
Sbjct: 68 HSSLVENHFDLLRRLGII--ESKEQIT--LNPIFRKSYIRAVQMG--LYRASQLKAMTDL 121
Query: 129 ---ARLPTLEDLEAYAIGQWECFL 149
+R +DL A +WEC L
Sbjct: 122 DEKSRKSASKDLGKKATERWECIL 145
>gi|320581720|gb|EFW95939.1| TFIIH basal transcription factor complex subunit 2 [Ogataea
parapolymorpha DL-1]
Length = 544
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 124/247 (50%), Gaps = 40/247 (16%)
Query: 194 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTD--------- 244
+ Y ++ LS+ Q+ M+ D D GL+ + F PT+LAT L+ T+
Sbjct: 289 QGYPVDPLSDTQKIMLDDLIDYGLIYTPSKTNKKIFYPTRLATTLTSEHTNFKTSAAVID 348
Query: 245 ------SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 298
++ +G +VVETNF++Y Y++S L IL LF ++ + N++ G IT+ES+
Sbjct: 349 QEITNSKNSNNQGTIVVETNFKIYCYTSSPLQIAILNLFVHLKARFANMVTGVITRESVR 408
Query: 299 NAFENGITAEQIISFLQQNAHP----RVADRIPS---------------------VPENV 333
A NGITA+Q+I++L +AHP + D++ +P V
Sbjct: 409 RALINGITADQMINYLGSHAHPWMVKQAEDKLARKLELESSIGNAAGQRQIDLEILPPTV 468
Query: 334 CDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEI 393
DQI+LW+ +L+R++ + Y++F + FE Y + ++W+D + R V E
Sbjct: 469 VDQIKLWQLELDRIQSFKGYLYKDFSTDLEFEKLLTYGEEIGVIVWKDRARKRFFVTQEG 528
Query: 394 HMHMREF 400
+ + ++
Sbjct: 529 NGQLLDY 535
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 22/159 (13%)
Query: 25 KLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKV------- 77
+LY +P C A+ R LP LAK Y+ ML+ D AIP+ + W+ F +
Sbjct: 32 QLYRSPETCLAVFRLLPSLAKFYIMTMLFQDAAIPSTDLNRWIKSSSFNGSRNLSKIYQN 91
Query: 78 -AIDRLVQL-------RLFSEEKKKETT----YRLNSTFQSNLQKHLINGGALPREPMPS 125
++ RL L R+F+ + +TT LN TF+ + ++ + G E +
Sbjct: 92 DSLKRLKALNLLKETRRIFTHPQTGQTTQLPFVSLNPTFRQSF-RNALTGSRDANEVVED 150
Query: 126 GITARLPTL--EDLEAYAIGQWECFLLQLISSAQAERPT 162
+ T+ E L+ Y + +WE L ++ S E P+
Sbjct: 151 NNLESIETISVEFLDTYCLHRWESILHFMVGSETKELPS 189
>gi|340518979|gb|EGR49219.1| trancription factor tfb2-like protein [Trichoderma reesei QM6a]
Length = 480
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 23/232 (9%)
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS--------------- 239
AY+ N L+E +R+M+ D GL+ + Q K S F PT+LAT L+
Sbjct: 250 AYDTNALTEERRNMLPSLVDFGLIYIPQ-HKRSMFFPTRLATTLTSGGNSLRTISEGSLG 308
Query: 240 MSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 299
+ + + G VV+ETN+R+YAY+ S L +L LF+K+ + P+++ G +++ S+
Sbjct: 309 LLGGGGTGEQAGSVVIETNYRLYAYTQSALQIAVLALFAKLNMRFPDMVAGRLSRASIRQ 368
Query: 300 AFENGITAEQIISFLQQNAHPRVADRI-----PSVPENVCDQIRLWESDLNRVEMTPAHY 354
A GITA+QIIS+L +AH ++ P +P V DQIRLW+ + R++ T
Sbjct: 369 AINFGITADQIISYLSAHAHEQMHRTAALTNKPVLPPTVVDQIRLWQLENERMKTTSGFL 428
Query: 355 YEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+ +F + ++ + L+W + N H +++FL+ + K
Sbjct: 429 FRDFTDDKDYLDTARFSEEIGVLVWRNDNTRMFFANK--HEQIKDFLKSRKK 478
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 18 LTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHK 76
L KLY+ P AI R LP LAK +V +ML++ + ++ WV P+ K
Sbjct: 16 LPGTTFKKLYQQPSTTFAIFRRMLPHLAKTFVMRMLFLPHPMTLADLDAWVKPEAKRKKD 75
Query: 77 VAID-----RLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARL 131
++ +VQ+ S+EK +E +L S F+ +L+ L GG +PS + +
Sbjct: 76 QSLSILRSLHIVQISAPSKEKPQEI--QLMSNFKRSLRLALTGGGNHNSFGVPSSLM--V 131
Query: 132 PTLED---LEAYAIGQWECFLLQLISS 155
P D L+ YA +WE L ++SS
Sbjct: 132 PPEIDLPFLDRYARKKWEDVLHFVVSS 158
>gi|367030175|ref|XP_003664371.1| hypothetical protein MYCTH_2307126 [Myceliophthora thermophila ATCC
42464]
gi|347011641|gb|AEO59126.1| hypothetical protein MYCTH_2307126 [Myceliophthora thermophila ATCC
42464]
Length = 512
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 130/244 (53%), Gaps = 35/244 (14%)
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM-------------- 240
AY+ + LSE +R+M+ D GL+ + + +F PT+LAT L+
Sbjct: 270 AYDTDALSETRRNMLPALVDFGLIYIPREDTRQYF-PTRLATTLTSSASSLRSVSSGFSA 328
Query: 241 -------------SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 287
+ ++SA +G V++ETN+R+YAY++S L +L LF+++ + +
Sbjct: 329 AAANNPGDASSLGTTPETSAASKGSVIIETNYRLYAYTSSPLQIAVLALFTQLNMRFAGM 388
Query: 288 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRIPSVPENVCDQIRLWES 342
G +T++S+ A GITA+QIIS+L +AH ++ A P +P V DQIRLW+
Sbjct: 389 ATGRLTRDSIRRAIGFGITADQIISYLASHAHEQMVRAAAATGRPVLPPTVVDQIRLWQL 448
Query: 343 DLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+ R+ + +++F S D + + YA + L+W+ KK R+ ++I +R++LR
Sbjct: 449 ENERMRTSAGFLFKDFDSLDEYLSLSAYAEEIGVLVWKSDKK-RMFYASKIE-QLRDYLR 506
Query: 403 GQNK 406
+ +
Sbjct: 507 SRKR 510
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDG 71
D + L KLY+ P AI R LPPLAK +V +LY+ + ++ WV P+G
Sbjct: 12 DYLEKLPGTTFRKLYQQPSTAFAIFRRMLPPLAKVFVQALLYMPSPMLLSELDVWVRPEG 71
Query: 72 FTKHKVAIDRLVQLRLFS---EEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGIT 128
+ A+ L L + K K +L + F+++L+ L GG +PS +
Sbjct: 72 KMQRDRALSILRSLHIVQITPPGKDKPQEIQLTTNFRNSLRLALEGGGTHNSFGVPSTLP 131
Query: 129 ARLPTLE--DLEAYAIGQWECFLLQLISSAQAE 159
P ++ L++YA +WE L +++S A+
Sbjct: 132 VD-PRIDIAYLDSYARRKWEDILHYVVNSVPAQ 163
>gi|358385986|gb|EHK23582.1| hypothetical protein TRIVIDRAFT_36912 [Trichoderma virens Gv29-8]
Length = 492
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 121/244 (49%), Gaps = 35/244 (14%)
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS------------- 241
AY+ N L+E +R+M+ D GL+ + Q K S F PT+LAT L+
Sbjct: 250 AYDTNALTEERRNMLPSLVDFGLIYIPQ-HKRSMFFPTRLATTLTSGGNSLRTISEGVTA 308
Query: 242 --------------LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 287
L S + G VV+ETN+R+YAY+ S L +L LF+K+ + P++
Sbjct: 309 ATQSAQTSQQALGPLGGSGGEQAGSVVIETNYRLYAYTQSALQIAVLALFAKLNMRFPDM 368
Query: 288 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI-----PSVPENVCDQIRLWES 342
+ G +++ S+ A GITA+QIIS+L +AH ++ P +P V DQIRLW+
Sbjct: 369 VAGRLSRASIRQAINFGITADQIISYLAAHAHEQMHRTAALTNKPVLPPTVVDQIRLWQL 428
Query: 343 DLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+ R++ T + +F + ++ + L+W++ N H +++FL+
Sbjct: 429 ENERMKTTSGFLFRDFTDDKDYLDTARFSEEIGVLVWKNDHARMFFANK--HEQIKDFLK 486
Query: 403 GQNK 406
+ +
Sbjct: 487 TRKR 490
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 18 LTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHK 76
L KLY+ P AI R LP LAK +V +ML++ + ++ WV P+ K
Sbjct: 16 LPGTTFKKLYQQPSTTFAIFRRMLPHLAKTFVMRMLFLPHPMTLTDLDAWVKPEAKRKKD 75
Query: 77 VAID-----RLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARL 131
++ +VQ+ S+EK +E +L S F+ +L+ L GG +PS + +
Sbjct: 76 QSLSILRSLHIVQISAPSKEKPQEI--QLMSNFKKSLRLALTGGGNHNSFGVPSSLL--V 131
Query: 132 PTLED---LEAYAIGQWECFLLQLISS 155
P D L+ YA +WE L ++SS
Sbjct: 132 PPEIDLPFLDRYARKKWEDVLHFVVSS 158
>gi|367040709|ref|XP_003650735.1| hypothetical protein THITE_2110518 [Thielavia terrestris NRRL 8126]
gi|346997996|gb|AEO64399.1| hypothetical protein THITE_2110518 [Thielavia terrestris NRRL 8126]
Length = 513
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 128/243 (52%), Gaps = 34/243 (13%)
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL---------------- 238
AY+ ++L+E +R+M+ D GL+ + + +F PT+LAT L
Sbjct: 272 AYDTDSLTETRRNMLPALVDFGLIYIPREDTRQYF-PTRLATTLTSSASALRSVSSGFSA 330
Query: 239 ----------SMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI 288
S+ +T + +G +++ETN+R+YAY++S L +L LF+++ + ++
Sbjct: 331 AAANNPGDAASLGMTPDTTPTKGSLIIETNYRLYAYTSSPLQIAVLALFTQLNMRFAGMV 390
Query: 289 VGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRIPSVPENVCDQIRLWESD 343
G +T++S+ A GITA+QIIS+L +AH ++ A P +P V DQIRLW+ +
Sbjct: 391 TGRLTRDSIRRAISFGITADQIISYLASHAHEQMTRAAAAAGRPVLPPTVVDQIRLWQLE 450
Query: 344 LNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRG 403
R+ T +++F S + + + YA + L+W+ +K V A +R++L+
Sbjct: 451 NERMRTTAGFLFKDFDSPEEYVSLSGYAEEIGVLVWKSDRKR--VFFASKFEQLRDYLKS 508
Query: 404 QNK 406
+ K
Sbjct: 509 RKK 511
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDG 71
D + L KLY+ P AI R LPPLAK +V +LY+ + ++ WV P+
Sbjct: 12 DYLEKLPGTTFRKLYQQPSTAFAIFRRMLPPLAKIFVQALLYMPSPLLLSELDVWVRPEA 71
Query: 72 FTKHKVAIDRLVQLRLFS---EEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSG-- 126
A+ L L + K K +L + F+++L+ L GG +PS
Sbjct: 72 KMHRDRALSILRSLHIVQISPPGKDKPQEIQLTTNFKNSLRLALEGGGTHNSFGVPSTLP 131
Query: 127 ITARLPTLEDLEAYAIGQWECFLLQLISS 155
+ R+ + L+ YA +WE L +++S
Sbjct: 132 VDPRI-DIAHLDQYARKKWEDILHYVVNS 159
>gi|312069992|ref|XP_003137940.1| transcription factor Tfb2 family protein [Loa loa]
Length = 470
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 119/471 (25%), Positives = 198/471 (42%), Gaps = 87/471 (18%)
Query: 11 FMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
++ ++S L+KLY +P + AI R LP L+++++ + +++ G W PD
Sbjct: 9 LLEYLSSRAIDQLDKLYSSPAVSFAIFRLLPELSQQFILKTVWLTGTNRKCEWHAWSAPD 68
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGIT-- 128
T I L +L++ +++ LN ++ + K G L + S +T
Sbjct: 69 METAVMNQISGLRKLKIIVGDEE----VMLNPVYRRSYLKATRIG--LCKASELSAVTDC 122
Query: 129 ---ARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQS----- 180
R +DL A+ +WEC L L +Q + S + ++F+ L S
Sbjct: 123 DEKTRKSANKDLGKKAVERWECILHYLALPSQ-KSEQGVSGTTKRLFRSAGLTSSENDDG 181
Query: 181 ------------ILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGR---- 224
+L + + +L +++ ++ I DF L ++ G
Sbjct: 182 DIEITSAGFQFLLLNRSEQIWTYLLYYFHMQEVAGIDIIKELDF----LFRVTNGSDKER 237
Query: 225 ---------KESWFIPTK--LATNLSMSLTDSSARKEGF--------------------- 252
E W PTK L + L RK+GF
Sbjct: 238 PAGSRAFLIDECWPEPTKDFLMHLRELGLVFIRKRKDGFFFLTPLLNHLTSISYASETGI 297
Query: 253 --------VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 304
V+VETN+R+YAY+ S L IL F+++ Y+ ++ VG +++E++ AF+ G
Sbjct: 298 ENRNQNGFVIVETNYRVYAYTDSNLQLAILSTFTEMLYRFNDMSVGVLSREAVRRAFQVG 357
Query: 305 ITAEQIISFLQQNAHPRV-------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEE 357
ITA QII+FL+ NAHP I SVP V DQIRLWE + R+ A Y
Sbjct: 358 ITAAQIIAFLRANAHPTTYAVTTEYGGMIQSVPITVADQIRLWEDERRRLMFCNAAVYSS 417
Query: 358 FPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR---GQN 405
F S + Y + LLW D + +V+ E H ++ + + G+N
Sbjct: 418 FESEKEYFGLKGYVSSQGILLWCDDVQRLMVITEEGHESVKSWWKMKTGKN 468
>gi|326435722|gb|EGD81292.1| hypothetical protein PTSG_11329 [Salpingoeca sp. ATCC 50818]
Length = 545
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/413 (25%), Positives = 189/413 (45%), Gaps = 56/413 (13%)
Query: 25 KLYENPFICEAILR-SLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
++Y++ C + + L L+K+ V ++LY+ A+ + W++P+ ++++L
Sbjct: 26 RMYKHAHACLGLFQLCLDGLSKQMVLRLLYLPSALSKAIVSTWIVPEQARLWTESLEQLQ 85
Query: 84 QLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGA-LPREPMPSGITARLPTLEDLEAYAI 142
+L++ + + + F++ L L G + P P A + + L+ YA
Sbjct: 86 KLQILAVSG--DGAVAVAQPFKNGLIAALQGTGKERCQAPDPGKHAA---SKDFLQQYAD 140
Query: 143 GQWECFLLQLISSAQAERPT--------------------NFSSSMMKVFQRGLLIQSIL 182
+WE L ++ S E T + SS + + Q
Sbjct: 141 EKWEDVLDYMVGSDSLEEDTVKQALYQSHLMTWREDVQDFDISSLGFQFLLQDRRTQLWF 200
Query: 183 RSLKFL--CQG----ILEA---------------YNLNTLSEIQRSMIKDFADLGLVKLQ 221
+KFL CQ I +A Y L++ + +++ F+ +GL
Sbjct: 201 YVIKFLQTCQNEGIDIEDALGFVFRVAYTTFGNYYPTEVLNKTEHLVLRHFSKIGLC-YH 259
Query: 222 QGRKESWFIPTKLATNL--SMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSK 279
+ +K + PT+LA L S +L A + GF+V+ETNFR+YAY+ S L +L+LF+K
Sbjct: 260 RKKKSKQYYPTRLALALRTSSALVAKDAMRCGFLVIETNFRIYAYTKSDLKISLLKLFAK 319
Query: 280 IEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPS----VPENVCD 335
Y+LP ++V +IT+ S+ A GITA QI+ FL+ + R+ + S VP V D
Sbjct: 320 PLYKLPTMLVASITRSSVRQAMAQGITARQILHFLKVHCSSRMRHQPHSVFSPVPPTVSD 379
Query: 336 QIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLV 388
QI LWE + +R+ T + P + +F + ++R +W D K ++
Sbjct: 380 QILLWEQETSRLSKTEGVLFRHLP-KPIFPKLLAFVKERQACIWYDETKRAII 431
>gi|392574410|gb|EIW67546.1| hypothetical protein TREMEDRAFT_33390 [Tremella mesenterica DSM
1558]
Length = 504
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 18/235 (7%)
Query: 189 CQGILEAYNLNTLSE-IQRSMIKDFADLGLV---KLQQGRKESWFIPTKLATNL------ 238
C I ++Y+L+T S Q + D GL+ G K +F PT L+T+L
Sbjct: 266 CMQITQSYSLSTFSNPTQLQALDDLQSYGLIYRPATPSGAKADYFFPTHLSTSLCSGNSA 325
Query: 239 ------SMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 292
+ + S + F+++ETN+++YAY+ ++L IL LF I+ Q NL+VG +
Sbjct: 326 LSAALNTTEIDTSHEDDKKFLILETNYKIYAYTNNELEIAILNLFMDIKVQYRNLVVGKL 385
Query: 293 TKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSV-PENVCDQIRLWESDLNRVEMTP 351
+ + A E GI+A QII++LQ +AHP++ P + + DQ+ LW+ + NR+
Sbjct: 386 DRAHVKAAMEKGISAYQIIAYLQSHAHPQMYSSPPPILHTTIVDQLHLWDKERNRLRTEE 445
Query: 352 AHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+ +E F S+D++E A+ GLL K L VN + +++F++GQ +
Sbjct: 446 SEMFEFF-SKDLYEDTEAEAKRYDGLLLAVPKDKLLFVNPSVKDAIKDFVKGQQR 499
>gi|116201905|ref|XP_001226764.1| hypothetical protein CHGG_08837 [Chaetomium globosum CBS 148.51]
gi|88177355|gb|EAQ84823.1| hypothetical protein CHGG_08837 [Chaetomium globosum CBS 148.51]
Length = 503
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 128/244 (52%), Gaps = 35/244 (14%)
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM-------------- 240
AYN L+E +R+M+ D GL+ + + +F PT+LAT L+
Sbjct: 261 AYNTGALTETRRNMLPHLVDFGLIFIPREDTRQYF-PTRLATTLTSSASSLRSVSSGFNA 319
Query: 241 -------------SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 287
+ ++SA +G V++ETN+R+YAY++S L +L LF+++ + +
Sbjct: 320 ATANNPGDTSSLGTTPETSAASKGSVIIETNYRLYAYTSSPLQIAVLGLFTQLNMRFAGM 379
Query: 288 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRIPSVPENVCDQIRLWES 342
G +T++S+ A GITA+QIIS+L +AH ++ A P +P V DQIRLW+
Sbjct: 380 ATGRLTRDSIRRAIGFGITADQIISYLASHAHDQMVRAAAATGRPVLPPTVVDQIRLWQL 439
Query: 343 DLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+ R+ + +++F S + + + YA + L+W KK R+ ++I +R++L+
Sbjct: 440 ENERMRTSAGFLFKDFDSLEEYVSLSSYADEVGVLVWRSDKK-RMFYASKIE-QLRDYLK 497
Query: 403 GQNK 406
+ K
Sbjct: 498 SRKK 501
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 5/147 (3%)
Query: 18 LTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHK 76
L KLY+ P AI R LPPLAK +V +LY+ + ++ WV +G +
Sbjct: 17 LPGTTFRKLYQQPSTAFAIFRRMLPPLAKVFVQALLYMPSPLLLAELDVWVRAEGKMQRD 76
Query: 77 VAIDRLVQLRLFS---EEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGI-TARLP 132
A+ L L + K K +L + F+++L+ L GG+ +PS + A
Sbjct: 77 RALSILRSLHIIQITPPGKDKPQEMQLTTNFKNSLRLALEGGGSHNSFGVPSTLPVAPRI 136
Query: 133 TLEDLEAYAIGQWECFLLQLISSAQAE 159
+ L+ YA +WE L +++S A+
Sbjct: 137 DIAHLDGYARKKWEDILHYVVNSVPAQ 163
>gi|393910938|gb|EFO26137.2| transcription factor Tfb2 family protein [Loa loa]
Length = 486
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 117/215 (54%), Gaps = 20/215 (9%)
Query: 210 KDF----ADLGLVKLQQGRKESWFIPTKLATNL-SMSLTDSSA----RKEGFVVVETNFR 260
KDF +LGLV +++ RK+ +F T L +L S+S + + GFV+VETN+R
Sbjct: 271 KDFLMHLRELGLVFIRK-RKDGFFFLTPLLNHLTSISYASETGIENRNQNGFVIVETNYR 329
Query: 261 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 320
+YAY+ S L IL F+++ Y+ ++ VG +++E++ AF+ GITA QII+FL+ NAHP
Sbjct: 330 VYAYTDSNLQLAILSTFTEMLYRFNDMSVGVLSREAVRRAFQVGITAAQIIAFLRANAHP 389
Query: 321 RV-------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARD 373
I SVP V DQIRLWE + R+ A Y F S + Y
Sbjct: 390 TTYAVTTEYGGMIQSVPITVADQIRLWEDERRRLMFCNAAVYSSFESEKEYFGLKGYVSS 449
Query: 374 RSGLLWEDSKKMRLVVNAEIHMHMREFLR---GQN 405
+ LLW D + +V+ E H ++ + + G+N
Sbjct: 450 QGILLWCDDVQRLMVITEEGHESVKSWWKMKTGKN 484
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 16/177 (9%)
Query: 11 FMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
++ ++S L+KLY +P + AI R LP L+++++ + +++ G W PD
Sbjct: 12 LLEYLSSRAIDQLDKLYSSPAVSFAIFRLLPELSQQFILKTVWLTGTNRKCEWHAWSAPD 71
Query: 71 GFTKHKVAIDRLVQLRLF--SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGIT 128
T I L +L++ EE YR +S L+ I L + S +T
Sbjct: 72 METAVMNQISGLRKLKIIVGDEEVMLNPVYR-----RSYLKATRI---GLCKASELSAVT 123
Query: 129 -----ARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQS 180
R +DL A+ +WEC L L +Q + S + ++F+ L S
Sbjct: 124 DCDEKTRKSANKDLGKKAVERWECILHYLALPSQ-KSEQGVSGTTKRLFRSAGLTSS 179
>gi|393910939|gb|EJD76097.1| transcription factor Tfb2 family protein, variant [Loa loa]
Length = 389
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 117/215 (54%), Gaps = 20/215 (9%)
Query: 210 KDF----ADLGLVKLQQGRKESWFIPTKLATNL-SMSLTDSSA----RKEGFVVVETNFR 260
KDF +LGLV +++ RK+ +F T L +L S+S + + GFV+VETN+R
Sbjct: 174 KDFLMHLRELGLVFIRK-RKDGFFFLTPLLNHLTSISYASETGIENRNQNGFVIVETNYR 232
Query: 261 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 320
+YAY+ S L IL F+++ Y+ ++ VG +++E++ AF+ GITA QII+FL+ NAHP
Sbjct: 233 VYAYTDSNLQLAILSTFTEMLYRFNDMSVGVLSREAVRRAFQVGITAAQIIAFLRANAHP 292
Query: 321 RV-------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARD 373
I SVP V DQIRLWE + R+ A Y F S + Y
Sbjct: 293 TTYAVTTEYGGMIQSVPITVADQIRLWEDERRRLMFCNAAVYSSFESEKEYFGLKGYVSS 352
Query: 374 RSGLLWEDSKKMRLVVNAEIHMHMREFLR---GQN 405
+ LLW D + +V+ E H ++ + + G+N
Sbjct: 353 QGILLWCDDVQRLMVITEEGHESVKSWWKMKTGKN 387
>gi|346323394|gb|EGX92992.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Cordyceps militaris CM01]
Length = 511
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 127/256 (49%), Gaps = 47/256 (18%)
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------MSLTDS-- 245
AY+ + LSE +R M+ AD GLV + +K S F PT+LAT L+ S++D
Sbjct: 257 AYDTHALSEQRRDMLPALADFGLVYIPP-QKRSMFFPTRLATTLTSGASSGLRSISDGVA 315
Query: 246 ------------------------------SARKEGFVVVETNFRMYAYSTSKLHCEILR 275
S + G VV+ETN+R+YAY+ S L +L
Sbjct: 316 AATSAARSSPSSSAHQPASSSAGSGPLGGGSGDQPGAVVIETNYRLYAYTQSTLQIAVLA 375
Query: 276 LFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI-----PSVP 330
LF+++ + P+++ G +T+ S+ A + GITA+QII++L +AH ++ P +P
Sbjct: 376 LFARLTMRFPDMVAGRLTRTSIRQAIQFGITADQIIAYLAAHAHEQMHRTAALTNKPVLP 435
Query: 331 ENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVN 390
V DQIRLW+ + R++ TP + +F + +A + L+W D KK +
Sbjct: 436 PTVVDQIRLWQLENERMKTTPGFLFRDFDDPKEYHDTRRFADEIGVLVWSDDKKG--LFF 493
Query: 391 AEIHMHMREFLRGQNK 406
A +R++L+ + K
Sbjct: 494 ASKFEQIRDYLKSRKK 509
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 9/155 (5%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEW 66
A D + L KLY+ P AI R LP LAK V +MLY+ G + ++ W
Sbjct: 8 AMQLADYLEKLPGTTFRKLYQQPSTAFAIFRRMLPHLAKTIVMRMLYMSGPMSLADLDAW 67
Query: 67 VLPDGFTKHKVAIDRLVQLRLF---SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPM 123
V P+ + + L L + + K K +L + F+++++ L GG +
Sbjct: 68 VKPEAKRQKDQMLSTLRSLHIVQISAPAKDKTQEVQLTTNFRTSMRLALTGGGNHNSFGV 127
Query: 124 PSGITARLPTLED---LEAYAIGQWECFLLQLISS 155
PS +T +P D L+ YA +W+ L ++SS
Sbjct: 128 PSSLT--VPPEIDAPFLDRYARRRWDEILHFVVSS 160
>gi|170589001|ref|XP_001899262.1| Transcription factor Tfb2 family protein [Brugia malayi]
gi|158593475|gb|EDP32070.1| Transcription factor Tfb2 family protein [Brugia malayi]
Length = 465
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 113/206 (54%), Gaps = 17/206 (8%)
Query: 209 IKDF----ADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE-----GFVVVETNF 259
IKDF +LGLV +++ RK+ +F T L +L+ S A E GFV+VETN+
Sbjct: 249 IKDFLMHLRELGLVFIRK-RKDGFFFLTPLLNHLTGISNTSEAGMENRNQNGFVIVETNY 307
Query: 260 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAH 319
R+YAY+ S L IL F+++ Y+ ++ VG +++E++ AF+ GITA QII+FL +NAH
Sbjct: 308 RVYAYTDSNLQLAILSTFTEMLYRFSDMSVGVLSREAVRRAFQVGITAAQIIAFLSRNAH 367
Query: 320 P-------RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 372
P I SVP V DQI+LWE + R+ A Y F S + Y
Sbjct: 368 PITCAVTTEYGRMIQSVPITVVDQIQLWEDERRRLTFCSAAVYSSFESEKEYFGLKGYVI 427
Query: 373 DRSGLLWEDSKKMRLVVNAEIHMHMR 398
++ LLW + +V+ E H +++
Sbjct: 428 SQNILLWCHDVQRLMVITEEGHENVK 453
>gi|358394641|gb|EHK44034.1| hypothetical protein TRIATDRAFT_222970 [Trichoderma atroviride IMI
206040]
Length = 491
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 118/244 (48%), Gaps = 35/244 (14%)
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF-- 252
AY+ N L+E +R+M+ D GL+ + Q K S F PT+LAT L+ EG
Sbjct: 249 AYDTNALTEERRNMLPSLVDFGLIYIPQ-HKRSMFFPTRLATTLTSGGNSLRTISEGVTA 307
Query: 253 -------------------------VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 287
VV+ETN+R+YAY+ S L +L LF+K+ + P++
Sbjct: 308 ATQSAQTSQQSLGPLGGGGEQQSGSVVIETNYRLYAYTQSALQIAVLALFAKLNMRFPDM 367
Query: 288 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI-----PSVPENVCDQIRLWES 342
+ G +++ S+ A GITA+QIIS+L +AH ++ P +P V DQIRLW+
Sbjct: 368 VAGRLSRASIRQAINFGITADQIISYLAAHAHEQMHRTAALTNKPVLPPTVVDQIRLWQL 427
Query: 343 DLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+ R++ T + +F + ++ + L+W + N H +++FL+
Sbjct: 428 ENERMKTTSGFLFRDFTDDKDYLDTARFSEEIGVLVWRNDHARMFFANK--HEQIKDFLK 485
Query: 403 GQNK 406
+ +
Sbjct: 486 TRKR 489
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 18 LTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHK 76
L KLY+ P AI R LP LAK +V +ML++ + ++ WV P+ K
Sbjct: 16 LPGTTFKKLYQQPSTAFAIFRRMLPHLAKTFVMRMLFMPHPMTLNDLDVWVKPEAKRKKD 75
Query: 77 VAID-----RLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARL 131
++ +VQ+ S+EK +E +L S F+ +L+ L GG +PS + +
Sbjct: 76 QSLSILRGLHIVQISAPSKEKPQEI--QLMSNFKRSLRLALTGGGNHNSFGVPSSLL--I 131
Query: 132 PTLED---LEAYAIGQWECFLLQLISS 155
P D L+ YA +W+ L ++SS
Sbjct: 132 PPEIDLPFLDRYARKKWDDVLHFVVSS 158
>gi|400597688|gb|EJP65418.1| RNA polymerase II transcription factor B subunit 2 [Beauveria
bassiana ARSEF 2860]
Length = 507
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 125/258 (48%), Gaps = 50/258 (19%)
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--------- 245
AY+ N L+E +R M+ AD GLV + +K S F PT+LAT L+ + S
Sbjct: 252 AYDTNALTEHRRDMLPALADFGLVYIPP-QKRSMFFPTRLATTLTSGASSSLRSISEGVV 310
Query: 246 -------------------------------SARKEGFVVVETNFRMYAYSTSKLHCEIL 274
+ + G +V+ETN+R+YAY+ S L +L
Sbjct: 311 AATSAALSASSSSSTHQDQNHQSRAGPLGAGAGDQIGSIVIETNYRLYAYTQSTLQIAVL 370
Query: 275 RLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR------VADRIPS 328
LFS++ + P+++ G IT+ S+ A + GITA+QII++L +AH + +A R P
Sbjct: 371 ALFSRLTMRFPDMVAGRITRTSIRQAIQFGITADQIIAYLAAHAHEQMHRSAALAAR-PV 429
Query: 329 VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLV 388
+P V DQIRLW+ + R++ T + +F + ++ +A + L+W K
Sbjct: 430 LPPTVVDQIRLWQLENERMKTTGGFLFRDFDDQKEYQDTRRFADEIGVLVWSSDKTGMFF 489
Query: 389 VNAEIHMHMREFLRGQNK 406
A +R++L+ + K
Sbjct: 490 --ASKFEQIRDYLKSRKK 505
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 13/157 (8%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEW 66
A D + L KLY+ P AI R LP LAK +V +MLY+ + ++ W
Sbjct: 8 ALQLADYLEKLPGTTFRKLYQQPSTAFAIFRRMLPQLAKTFVMRMLYMPNPMSLNDLDSW 67
Query: 67 VLPDGFTKHKVAIDRL-----VQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPRE 121
V P+ + + L VQ+ S++K +E +L + F+++++ L GG
Sbjct: 68 VKPEAKRQKDQMLSTLRSLHIVQISAPSKDKTQEV--QLTANFRTSMRLALTGGGNHGSF 125
Query: 122 PMPSGITARLPTLED---LEAYAIGQWECFLLQLISS 155
+PS T +P D L+ YA +W+ L ++SS
Sbjct: 126 GVPS--TLAVPPEIDLPFLDRYARRRWDEILHFVVSS 160
>gi|452824378|gb|EME31381.1| transcription initiation factor TFIIH subunit H4 [Galdieria
sulphuraria]
Length = 740
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 109/211 (51%), Gaps = 23/211 (10%)
Query: 182 LRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQG---RKESWFIPTKLATNL 238
L L F G+ AY+ TLS+ Q+ I ADLGL+ L K+S+F T L L
Sbjct: 243 LFELSFCASGV--AYHWKTLSKTQQIYIPYLADLGLIYLHISSSLEKDSYFYVTPLGVTL 300
Query: 239 SMS---LTD----------SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLP 285
+ S L D S+ + ++V+TNFR+Y Y+ +L LF + Y+LP
Sbjct: 301 TRSICWLGDKNNYLLLEDWSNVDNDCRMIVQTNFRVYVYTNCTFQISLLSLFIQFLYRLP 360
Query: 286 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLN 345
N+ VG IT++S+ A NGITA+Q+IS+LQ + HP + ++P + DQIRLWE+
Sbjct: 361 NMAVGVITRDSIRTALNNGITAQQMISYLQNHMHPNMKGKLPIT---IIDQIRLWEAQRF 417
Query: 346 RVEMTPAHYYEEFPSRDVFEAACDYARDRSG 376
RV A + F + FE Y R G
Sbjct: 418 RVTTKHALLLDHFDNMTCFEKT--YGTTRIG 446
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 20 ARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAI 79
A ++ LY++P+ I L L K + ++L+I I A T+ +W ++ + +
Sbjct: 19 ADEVETLYKSPYATSCIFEILSSLQKAILTRLLFIQ-EIDASTLLKWFQKQSQSQIQTIV 77
Query: 80 DRLVQLR-LFSEEKKKETTYRLNSTFQSNLQKHLINGGALP 119
+ LV LR L+ ++ +++N FQ +LQ ++ P
Sbjct: 78 NHLVDLRILYRKQGSNSVQFQMNPKFQKSLQDLILRNVVSP 118
>gi|430812024|emb|CCJ30551.1| unnamed protein product [Pneumocystis jirovecii]
Length = 319
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 107/199 (53%), Gaps = 20/199 (10%)
Query: 194 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFV 253
++Y +++L+ IQ ++++ D G+V ++ + F PT+LAT L+ + E +
Sbjct: 125 QSYLISSLTPIQIQVLENLKDYGIVYRRKSSRR--FYPTRLATILT-------SNSEILI 175
Query: 254 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
S L +L LF + + NL+VG IT+ S+ AF NGITAEQIIS+
Sbjct: 176 -----------RHSPLQIAVLNLFVHLYLRFSNLVVGVITRNSVRQAFMNGITAEQIISY 224
Query: 314 LQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARD 373
L AHP++ P +P V DQIRLWE + NR++ T + + +F S FE A YA +
Sbjct: 225 LTSYAHPQMKKNTPIIPPTVNDQIRLWEMERNRLKATEGYLFRDFNSNSDFELALKYANE 284
Query: 374 RSGLLWEDSKKMRLVVNAE 392
+ ++WE K VN +
Sbjct: 285 LNVVVWEAPSKRVFFVNIQ 303
>gi|322697444|gb|EFY89224.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Metarhizium acridum CQMa 102]
Length = 541
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 124/266 (46%), Gaps = 58/266 (21%)
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS------------- 241
AY+ N L+E +R+M+ D GL+ + Q K S F PT+LAT L+
Sbjct: 278 AYDTNALTEQRRNMLPSLLDFGLIYIPQ-HKRSMFFPTRLATALTSGGGSLRTISEGVAA 336
Query: 242 -----------------------------------LTDSSARKEGFVVVETNFRMYAYST 266
SA ++G V+VETN+R+YAY+
Sbjct: 337 ATAAAGPSSHEGVAAATAAAGPSSQSGSGSGGAGGPLGPSADQKGSVIVETNYRIYAYTQ 396
Query: 267 SKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR----- 321
S L +L LF K+ + P+++ G +T+ S++ A GITA+QIIS+L +AH +
Sbjct: 397 STLQIAVLALFCKLNMRFPDMVAGRVTRTSIHQAINFGITADQIISYLAAHAHEQMHRTA 456
Query: 322 -VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE 380
+A++ P +P V DQIRLW+ + R++ T + +F F +A + L+W
Sbjct: 457 ALANK-PILPPTVVDQIRLWQLENERMKTTGGFLFRDFEDHKEFLDTARFAEEIGVLVWR 515
Query: 381 DSKKMRLVVNAEIHMHMREFLRGQNK 406
K N + +R++L+ + +
Sbjct: 516 SDKSGMFFANK--YEQIRDYLKSRKR 539
>gi|223993063|ref|XP_002286215.1| transcription factor of TFIIH family [Thalassiosira pseudonana
CCMP1335]
gi|220977530|gb|EED95856.1| transcription factor of TFIIH family [Thalassiosira pseudonana
CCMP1335]
Length = 461
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 119/225 (52%), Gaps = 31/225 (13%)
Query: 182 LRSLKFL-CQG---ILEAYNLNTL-SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLAT 236
+ +L FL C G + E Y + L S+ R++++DF+ GL+ + + ++ F PT+ A
Sbjct: 241 MEALSFLICLGSCRVGEGYQSSVLGSKSARALMRDFSRFGLLFVCRVAGKNSFYPTRAAV 300
Query: 237 NLSMSLTDSS----------------ARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKI 280
NL S + +R VVV+TNF++ AY+ SKLH L LF +
Sbjct: 301 NLVASSEKAGRQASDLMGQTLAAPVPSRSHLAVVVQTNFQVVAYTKSKLHISTLGLFCDV 360
Query: 281 EY--QLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP--RVADRIPSVPENVCDQ 336
+LPN+I IT++S+ +AF G+TA+QI+ FL +AHP R DR P VP NV DQ
Sbjct: 361 SSFRRLPNVIFFHITRDSIRSAFRLGVTADQILRFLHVHAHPMLRSGDR-PMVPSNVVDQ 419
Query: 337 IRLWESDLNRVEMTPAHYYEEFPSRDV--FEAACDYARDRSGLLW 379
I LW+ + +RV M ++ RD F A YA D L W
Sbjct: 420 ILLWDRERHRVVMDEVCVHQ---CRDAAEFTAVSQYASDVDALAW 461
>gi|401825125|ref|XP_003886658.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon hellem
ATCC 50504]
gi|395459803|gb|AFM97677.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon hellem
ATCC 50504]
Length = 414
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 109/196 (55%), Gaps = 15/196 (7%)
Query: 208 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR-KEGFVVVETNFRMYAYST 266
++K LG++KL KES I + L ++S R + F++VETN ++YAY+
Sbjct: 230 LLKYLEALGILKLY---KESLAIGKSF-----VQLFEASERNRREFIIVETNNKIYAYTN 281
Query: 267 SKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI 326
S+ ++ LF + LPNLI G+IT+ES+ AF+ GIT +QII FL+ + P
Sbjct: 282 SEYEKSVIHLFCSVSVNLPNLIKGSITEESVNVAFDKGITGKQIIHFLEASVKP------ 335
Query: 327 PSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMR 386
S+P + QI +WES NR+ M P + Y F + ++ ++ +RS L+ D K
Sbjct: 336 GSLPPAISSQIMIWESKRNRIFMAPGYIYSNFLNLSDYQRVLEFCTERSYLIESDVDKRM 395
Query: 387 LVVNAEIHMHMREFLR 402
+VV E H ++EF++
Sbjct: 396 IVVKVEGHELVKEFIK 411
>gi|396080769|gb|AFN82390.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon
romaleae SJ-2008]
Length = 414
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 96/164 (58%), Gaps = 7/164 (4%)
Query: 240 MSLTDSSAR-KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 298
+ L ++S R + F++VETN ++YAY+ S+ ++ LF + LPNLI G+IT+ES+
Sbjct: 254 VQLFEASERNRREFIIVETNNKIYAYTNSEYEKSVIHLFCNVSVSLPNLIKGSITEESVN 313
Query: 299 NAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF 358
AF+ GIT +QII FL+ + P S+P + QI +WES NR+ M P + Y F
Sbjct: 314 VAFDKGITGKQIIHFLEASVKP------GSLPPAITSQIMIWESKRNRIFMVPGYIYSNF 367
Query: 359 PSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
+ ++ ++ +RS L+ D K +VV E H +REF++
Sbjct: 368 LNLSDYQRVLEFCTERSYLIESDVGKRMIVVKLEGHELVREFIK 411
>gi|303388087|ref|XP_003072278.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon
intestinalis ATCC 50506]
gi|303301417|gb|ADM10918.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon
intestinalis ATCC 50506]
Length = 414
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 114/203 (56%), Gaps = 17/203 (8%)
Query: 202 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-MSLTDSSAR-KEGFVVVETNF 259
S + + ++K LG++KL LA S + L ++S R + F++VETN
Sbjct: 224 SSMDKRLLKYLEVLGILKLY---------GENLAIRRSFVQLFEASERNRREFIIVETNN 274
Query: 260 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAH 319
++YAY+ S+ ++ LF + + LPNL G+IT+ES+ AF+ GIT QII FL+ ++
Sbjct: 275 KIYAYTNSEYEKSVIHLFCNVSFNLPNLTKGSITEESVNAAFDKGITGRQIIHFLEASSK 334
Query: 320 PRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLW 379
P S+P + +QI +WES NR+ M P + Y F + ++ ++ +R+ L+
Sbjct: 335 P------GSLPPAIINQIIIWESKRNRIFMAPGYLYSNFLNLSDYQKVLEFCSERNYLIE 388
Query: 380 EDSKKMRLVVNAEIHMHMREFLR 402
D + +VVN + H+ ++EF++
Sbjct: 389 SDIDRRMIVVNPKGHVFVKEFIK 411
>gi|336270172|ref|XP_003349845.1| hypothetical protein SMAC_00733 [Sordaria macrospora k-hell]
gi|380095234|emb|CCC06707.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 496
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 124/252 (49%), Gaps = 50/252 (19%)
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----------SMSLTD 244
AY+ + L+E +R+M+ D GL+ + ++ F PT+LAT L S + T
Sbjct: 253 AYDTSALTETRRNMLPSLVDFGLIYFPRDTRQ--FFPTRLATTLTSTASALRTVSSAFTA 310
Query: 245 SSARKEG-------------------------FVVVETNFRMYAYSTSKLHCEILRLFSK 279
++A G +++ETN+R+YAY+TS L +L LF +
Sbjct: 311 ATANPSGEPGTTTSTSGGPAGATPADKTGTSKGIIIETNYRIYAYTTSPLQIAVLALFCQ 370
Query: 280 IEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI-----PSVPENVC 334
+ + PN++ A+ A GITA+QIIS+L +AH ++ +P V
Sbjct: 371 LNMRFPNMVSAAL------RAIGFGITADQIISYLHAHAHQQMVREATVTGKTVLPPTVV 424
Query: 335 DQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIH 394
DQIRLW+ + R++ T +++F S + + A YA + L+W++ K R + A H
Sbjct: 425 DQIRLWQLENERMQTTAGFLFKDFESTEEYAALSRYAEEIGVLVWKNDK--RQLFFASKH 482
Query: 395 MHMREFLRGQNK 406
+R++L+ + K
Sbjct: 483 EQLRDYLKSRKK 494
>gi|310799661|gb|EFQ34554.1| transcription factor tfb2 [Glomerella graminicola M1.001]
Length = 485
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/326 (29%), Positives = 154/326 (47%), Gaps = 39/326 (11%)
Query: 105 QSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNF 164
+S+++ L+ G + R+ GIT T EA A W LL L ++ AE
Sbjct: 172 KSSVKNLLVAGQLVRRQGSAVGITQAGFTFLLQEANA-QVWTLLLLWLEATDHAEDAAGM 230
Query: 165 SSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGR 224
S+ M F L + R Y+ N L+E +R+M+ D GL+ + +
Sbjct: 231 ESTDMLSFLFLLASLELGRP-----------YDTNALTEARRNMLPSLLDFGLIYIPSHK 279
Query: 225 KESWFIPTKLATNL--------------SMSLTDSSA-----RKEGFVVVETNFRMYAYS 265
+ +F PT+LAT L S + S A R F + ETN+R+YAY
Sbjct: 280 PQQYF-PTRLATTLTSSSSALSYAHCRDSETFFQSYASHLMIRVRPFRLSETNYRVYAYG 338
Query: 266 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV--- 322
+ L +L LF K++ + +++ G +T+ S+ NA E GITA+QIIS+L +AH ++
Sbjct: 339 QTPLQIAVLSLFCKLKLRFADMVSGRLTRNSIRNAVERGITADQIISYLAAHAHEQMHRM 398
Query: 323 --ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE 380
A P +P V DQIRLW+ + R+ T + +F S ++ YA + L+W
Sbjct: 399 AAARSRPILPPTVIDQIRLWQLETERMTTTSGFLFRDFDSPREYDDIAGYAAEIGVLVWR 458
Query: 381 DSKKMRLVVNAEIHMHMREFLRGQNK 406
+ K A H +R++L+ + K
Sbjct: 459 NDKLGMFF--ASKHEQIRDYLKLRKK 482
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 13/152 (8%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRSL-PPLAKKYVFQMLYIDGAIPAKTMEEWVLPDG 71
D + L KLY P AI R + PPLAK V +LY+ + + ++ WV P+
Sbjct: 13 DYLEKLPGTTFRKLYLQPSTAFAIFRRMIPPLAKTIVMAILYMPKPMLLEDLDVWVKPES 72
Query: 72 FTKHKVAIDRL-----VQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSG 126
+ AI L +Q+ + S+E+ +E +L + F+++L+ L GG +PS
Sbjct: 73 RRQKDQAISTLRSLHILQITVPSKERPQEM--QLTTNFKNSLRLALEGGGTHNSFGVPSS 130
Query: 127 ITARLP---TLEDLEAYAIGQWECFLLQLISS 155
+ A P T+ L+ YA +WE L ++++
Sbjct: 131 LPA--PPEITVPFLDRYARRKWEDILHYIVNT 160
>gi|401887601|gb|EJT51582.1| hypothetical protein A1Q1_07170 [Trichosporon asahii var. asahii
CBS 2479]
gi|406699646|gb|EKD02845.1| hypothetical protein A1Q2_02789 [Trichosporon asahii var. asahii
CBS 8904]
Length = 451
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 117/207 (56%), Gaps = 15/207 (7%)
Query: 209 IKDFADLGLVKLQQ---GRKESWFIPTKLATNLSMSLTD----SSARKEGFVVVETNFRM 261
+ D G + +Q GRK F PT LAT+L T ++A + F+++ETN+R+
Sbjct: 237 LDDLEQYGFIYRRQEVDGRKTDQFFPTHLATSLCSGDTSVNRSATADDKRFLILETNYRV 296
Query: 262 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR 321
YAY++++L IL LF I + PNLIVG + + + A + GI+A QIIS+L +AHP+
Sbjct: 297 YAYTSNELEIAILNLFVNITIRYPNLIVGHLDRRHVKAAMDKGISAYQIISYLTTHAHPQ 356
Query: 322 VADRIPSVPE-NVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE 380
+ + P + +V DQ+ LW+ + NRV+ + EF S+++FE D A +R G L
Sbjct: 357 MYNHPPPLLHPSVTDQLHLWDRERNRVQAQDTVMF-EFYSKELFETCRDEA-ERMGALQH 414
Query: 381 DSKKMR-----LVVNAEIHMHMREFLR 402
++ + + V+ I +R+F++
Sbjct: 415 SVQRGQGMAKLIFVDPTIRESLRDFIK 441
>gi|322711210|gb|EFZ02784.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Metarhizium anisopliae ARSEF 23]
Length = 540
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 125/262 (47%), Gaps = 54/262 (20%)
Query: 195 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTD---------- 244
AY+ N L+E +++M+ D GL+ + Q K S F PT+LAT L+ +
Sbjct: 281 AYDTNALTEQRKNMLPSLLDFGLIYIPQ-HKRSMFFPTRLATTLTSGGSSLRTISEGVAA 339
Query: 245 ------------------------------SSARKEGFVVVETNFRMYAYSTSKLHCEIL 274
SA ++G V+VETN+R+YAY+ S L +L
Sbjct: 340 ATAAATTTAPAGGPSSQSGSGSGGTGGPLGPSADQKGSVIVETNYRIYAYTQSTLQIAVL 399
Query: 275 RLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR------VADRIPS 328
LF K+ + P+++ G +T+ S++ A GI+A+QIIS+L +AH + +A++ P
Sbjct: 400 ALFCKLNMRFPDMVAGRVTRTSIHQAINFGISADQIISYLAAHAHEQMHRSAALANK-PI 458
Query: 329 VPENVCDQIRLWESDLN----RVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKK 384
+P V DQIRLW+ + R++ T + +F F +A + L+W K
Sbjct: 459 LPPTVVDQIRLWQLEWQLENERMKTTGGFLFRDFEDHKEFLDTARFAEEIGVLVWRSDKS 518
Query: 385 MRLVVNAEIHMHMREFLRGQNK 406
N + +R++L+ + +
Sbjct: 519 GMFFANK--YEQIRDYLKSRKR 538
>gi|361130709|gb|EHL02459.1| putative RNA polymerase II transcription factor B subunit 2 [Glarea
lozoyensis 74030]
Length = 210
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 109/205 (53%), Gaps = 32/205 (15%)
Query: 208 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE----------------G 251
M+++ D GLV + K+ +F PT+LAT L+ +D+SA + G
Sbjct: 1 MLENLVDFGLVYIPPSVKDQFF-PTRLATTLT---SDASALRSITAGFESALSTGSGTAG 56
Query: 252 FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQII 311
F+++ETN+ S L +L LF+K+ + PN++ G +T+ES+Y A +GI+++QII
Sbjct: 57 FIIIETNYH------SPLQIAVLALFTKLTTRYPNMVTGRVTRESVYRAVSSGISSDQII 110
Query: 312 SFLQQNAHPRV------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFE 365
++L +AHP + P +P V DQIRLW+ + R++ T +++F S D ++
Sbjct: 111 TYLSTHAHPELLKASAAKGGGPVLPPTVVDQIRLWQIENERMKTTYGFLFKDFESTDEYK 170
Query: 366 AACDYARDRSGLLWEDSKKMRLVVN 390
YA + L W + + V+
Sbjct: 171 KLLKYADEIGVLTWASKTEEKFFVS 195
>gi|308460920|ref|XP_003092758.1| hypothetical protein CRE_20976 [Caenorhabditis remanei]
gi|308252517|gb|EFO96469.1| hypothetical protein CRE_20976 [Caenorhabditis remanei]
Length = 128
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 78/117 (66%), Gaps = 3/117 (2%)
Query: 289 VGAITKESLYNAFENGITAEQIISFLQQNAHPR---VADRIPSVPENVCDQIRLWESDLN 345
VG IT+ES+ A ++GITA QIISFL+ NAHP+ + I +P V DQIRLWE +
Sbjct: 3 VGMITRESVRGALQHGITAAQIISFLRANAHPQCIATSGAINCLPITVADQIRLWEDERR 62
Query: 346 RVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
R+++ A+ Y F S D F+ CDYA++R LLW ++++ ++VN E H ++R++ +
Sbjct: 63 RMDLKDAYIYSHFESEDEFQGVCDYAQERGILLWANAQQKLVIVNEEGHEYVRQWYK 119
>gi|134118870|ref|XP_771938.1| hypothetical protein CNBN1180 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254542|gb|EAL17291.1| hypothetical protein CNBN1180 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 481
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 110/452 (24%), Positives = 194/452 (42%), Gaps = 99/452 (21%)
Query: 34 EAILRSLPPLAKKYVFQMLY---------------IDGAIPAKTMEEWVLPDGFTKHKVA 78
E + R LPP+ ++ + L+ +D P + +E + P A
Sbjct: 36 EELYRLLPPVCRQIILHALWSHHPLRTVDVKLLLQMDVHAPLEECDEVMRP--------A 87
Query: 79 IDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMP----SGITARLPTL 134
IDR V + KK+ + LN +F+ L+ L G +P LP+
Sbjct: 88 IDRKVLHPM--HYKKQRMQWSLNDSFKKGLRNALTGLGTSNSFGVPFERHQATDLDLPSE 145
Query: 135 EDLEAYAIGQWECFLLQLISSAQAERPTNFSSS------MMKVFQRGLLIQSI------- 181
++L AY +E L ++SS T FS S + + GL+ S+
Sbjct: 146 DELVAYGEDTFESILKYMVSSGLG---TEFSGSRPQPEVLQLLHTSGLMTDSVDMNGRNP 202
Query: 182 --------LRSLKFLCQG-----------ILEAYNLNTLSEIQRSMIKDFADLGLVKLQQ 222
+ +FL + L A N SE ++ F LG ++L Q
Sbjct: 203 NINRLTITSKGFQFLLEKRQTQLWEILMYYLSAKEAN--SERSSEVLSMFFSLGCMQLGQ 260
Query: 223 ---------GRKESW------------------FIPTKLATNL----SMSLTDSSARKEG 251
G +E+ F PT LAT+L + ++ SA +
Sbjct: 261 DYSASNSFPGAQEALDDLAQYGFIYKSSPDSDQFWPTHLATSLCSGDASAIQSQSADDKR 320
Query: 252 FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQII 311
F+++ETN+++YAY++++L IL LF I + PNL+VG + ++ + A E GI+A QII
Sbjct: 321 FLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEKGISARQII 380
Query: 312 SFLQQNAHPRVADRIPSVPE-NVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 370
++L +AHP++ + P + + DQ+ LW+ + NR++ YE F S+++F+ +
Sbjct: 381 AYLSSHAHPQMYNSPPPLLHPTIVDQLYLWDRERNRLQTEETVMYEFF-SKELFDDTVNE 439
Query: 371 ARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
A+ + L + + L + + EF++
Sbjct: 440 AKANAALQHAATSQKLLFIEPHTKPAITEFVK 471
>gi|429962184|gb|ELA41728.1| hypothetical protein VICG_01232 [Vittaforma corneae ATCC 50505]
Length = 449
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 8/155 (5%)
Query: 252 FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQII 311
F+V+ETNF++YAY+++ +L LFSK Y PNLI +ESL +AF GITA+QII
Sbjct: 303 FIVLETNFKIYAYTSTAYDKSVLSLFSKTVYVFPNLIKACFDEESLLSAFNKGITAKQII 362
Query: 312 SFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 371
+LQ+++ VP+N+ +QI +WE +R+ + Y +F F Y
Sbjct: 363 KYLQEHS--------EEVPKNIVNQISIWEHRQHRIRARNGYLYHDFIHLSDFHRVLRYV 414
Query: 372 RDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+ GL++ D K +V IH ++ F++ K
Sbjct: 415 ESKGGLIYRDEVKRMIVGEERIHESVKNFIKEMQK 449
>gi|405123868|gb|AFR98631.1| transcription factor TFIIH complex subunit Tfb2 [Cryptococcus
neoformans var. grubii H99]
Length = 481
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 144/285 (50%), Gaps = 13/285 (4%)
Query: 124 PSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILR 183
P +T R P + L + G FLL+ + E + S+ +R + S+
Sbjct: 194 PGDMTGRNPNINRLTITSKGFQ--FLLEKRQTQLWEILMYYLSAKEANSERSSEVLSMFF 251
Query: 184 SLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPTKLATNL---- 238
SL C + + Y+ + + + D A G + K G + W PT LAT+L
Sbjct: 252 SLG--CMQLGQDYSASKSFPHAQEALDDLAQYGFIYKSSPGSDQFW--PTHLATSLCSGD 307
Query: 239 SMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 298
+ ++ SA + F+++ETN+++YAY++++L IL LF I + PNL+VG + ++ +
Sbjct: 308 ASAIQSQSADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVK 367
Query: 299 NAFENGITAEQIISFLQQNAHPRVADRIPS-VPENVCDQIRLWESDLNRVEMTPAHYYEE 357
A E GI+A QII++L +AHP++ + P + + DQ+ LW+ + NR++ YE
Sbjct: 368 AAMEKGISAGQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLHLWDRERNRLQTEETVMYEF 427
Query: 358 FPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
F S+++F+ + A+ + L + + L + + EF++
Sbjct: 428 F-SKELFDDTVNEAKANAALQHAATSQKLLFIEPHTKPAITEFVK 471
>gi|440493551|gb|ELQ76006.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB2 [Trachipleistophora
hominis]
Length = 426
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 94/165 (56%), Gaps = 7/165 (4%)
Query: 242 LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 301
L S+A ++ F++VETN+++YAY+TS I++LFS+I +LPNL+ IT+ES+ AF
Sbjct: 269 LFSSAAIQDSFLIVETNYKLYAYTTSSHELSIIKLFSQIVRELPNLVTAHITEESVNAAF 328
Query: 302 ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR 361
GIT +QI+ +L + + +P V +QI +WE +R++ A Y F +
Sbjct: 329 LKGITGQQIVDYLTEKSKSE-------LPPVVLEQILIWERQRDRMKCIDAVIYSHFMTY 381
Query: 362 DVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+ +E Y R++ L+ D + LVV E H ++ F++ K
Sbjct: 382 NEYEITYRYCREKGALIDHDEFRRLLVVRLECHNEVKNFIKNNIK 426
>gi|58262306|ref|XP_568563.1| hypothetical protein CNN01190 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57230737|gb|AAW47046.1| hypothetical protein CNN01190 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 481
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 107/427 (25%), Positives = 185/427 (43%), Gaps = 99/427 (23%)
Query: 34 EAILRSLPPLAKKYVFQMLY---------------IDGAIPAKTMEEWVLPDGFTKHKVA 78
E + R LPP+ ++ + L+ +D P + +E + P A
Sbjct: 36 EELYRLLPPVCRQIILHALWSHHPLRTVDVKLLLQMDVHAPLEECDEVMRP--------A 87
Query: 79 IDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMP----SGITARLPTL 134
IDR V + KK+ + LN +F+ L+ L G +P LP+
Sbjct: 88 IDRKVLHPM--HYKKQRMQWSLNDSFKKGLRNALTGLGTSNSFGVPFERHQATDLDLPSE 145
Query: 135 EDLEAYAIGQWECFLLQLISSAQAERPTNFSSS------MMKVFQRGLLIQSI------- 181
++L AY +E L ++SS T FS S + + GL+ S+
Sbjct: 146 DELVAYGEDTFESILKYMVSSGLG---TEFSGSRPQPEVLQLLHTSGLMTDSVDMNGRNP 202
Query: 182 --------LRSLKFLCQG-----------ILEAYNLNTLSEIQRSMIKDFADLGLVKLQQ 222
+ +FL + L A N SE ++ F LG ++L Q
Sbjct: 203 NINRLTITSKGFQFLLEKRQTQLWEILMYYLSAKEAN--SERSSEVLSMFFSLGCMQLGQ 260
Query: 223 ---------GRKESW------------------FIPTKLATNL----SMSLTDSSARKEG 251
G +E+ F PT LAT+L + ++ SA +
Sbjct: 261 DYSASNSFPGAQEALDDLAQYGFIYKSSPDSDQFWPTHLATSLCSGDASAIQSQSADDKR 320
Query: 252 FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQII 311
F+++ETN+++YAY++++L IL LF I + PNL+VG + ++ + A E GI+A QII
Sbjct: 321 FLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEKGISARQII 380
Query: 312 SFLQQNAHPRVADRIPSVPE-NVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 370
++L +AHP++ + P + + DQ+ LW+ + NR++ YE F S+++F+ +
Sbjct: 381 AYLSSHAHPQMYNSPPPLLHPTIVDQLYLWDRERNRLQTEETVMYEFF-SKELFDDTVNE 439
Query: 371 ARDRSGL 377
A+ + L
Sbjct: 440 AKANAAL 446
>gi|355693906|gb|AER99491.1| proteinral transcription factor IIH, polypeptide 4, 52kDa [Mustela
putorius furo]
Length = 143
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 84/139 (60%)
Query: 267 SKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI 326
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 2 SELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQT 61
Query: 327 PSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMR 386
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 62 PVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRL 121
Query: 387 LVVNAEIHMHMREFLRGQN 405
+VV H ++ F + Q
Sbjct: 122 MVVTPAGHSDVKRFWKRQK 140
>gi|300707677|ref|XP_002996037.1| hypothetical protein NCER_100934 [Nosema ceranae BRL01]
gi|239605297|gb|EEQ82366.1| hypothetical protein NCER_100934 [Nosema ceranae BRL01]
Length = 403
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 126/240 (52%), Gaps = 32/240 (13%)
Query: 181 ILRSLKFLC-QGILEAYNLNTLSEI-----------QRSMIKDFAD----LGLVKLQQGR 224
I+ +LKF C IL+ N ++ E+ ++ + K F D LGL+KL+
Sbjct: 177 IIAALKFYCVDEILQISNFMSIMELSNMLPIYKYKLKKDVNKKFYDFLSYLGLIKLEND- 235
Query: 225 KESWFIPTKLATNLSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQL 284
+ T S +K F+++ETNF++YAY++S I++LFS I ++
Sbjct: 236 ---------ILTIYHNLFVKSDTKKLRFILLETNFKLYAYTSSVYEMSIIQLFSNIYLKM 286
Query: 285 PNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDL 344
PNLI +IT+ESL NAF G+T++QII+FL+ ++ D +P + QI +WE+
Sbjct: 287 PNLIKASITEESLSNAFSKGVTSQQIINFLK--SYSLFED----IPVAIISQIIIWETKR 340
Query: 345 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
R+++ P + Y F + ++ + ++ +D +K +V+ + + +++F++ Q
Sbjct: 341 KRIKIFPGYLYSNFLNLIDYQKVVKFCLSNDCIIEKDDEKRMIVIKPDHNEVVKKFVKQQ 400
>gi|321265552|ref|XP_003197492.1| subunit of TFIIH and nucleotide excision repair factor 3 complexes
[Cryptococcus gattii WM276]
gi|317463972|gb|ADV25705.1| Subunit of TFIIH and nucleotide excision repair factor 3 complexes,
putative [Cryptococcus gattii WM276]
Length = 481
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 117/219 (53%), Gaps = 7/219 (3%)
Query: 189 CQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----SMSLTD 244
C + + Y+ + + + D A G + + F PT LAT+L + ++
Sbjct: 255 CMQLGQDYSASNSFPHAQEALNDLAQYGFI-YKPSPDSDQFWPTHLATSLCSGDASAIQS 313
Query: 245 SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 304
SA + F+++ETN+++YAY++++L IL LF I + PNL+VG + ++ + A E G
Sbjct: 314 QSADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEKG 373
Query: 305 ITAEQIISFLQQNAHPRVADRIPS-VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDV 363
I+A QII++L +AHP++ + P + + DQ+ LW+ + NR++ YE F S+++
Sbjct: 374 ISARQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLHLWDRERNRLQTEETVMYEFF-SKEL 432
Query: 364 FEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
F+ + A+ + L + + L + + EF++
Sbjct: 433 FDDTVNEAKANAALQHAATSQKLLFIEPHTKPAITEFVK 471
>gi|207340606|gb|EDZ68904.1| YPL122Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 226
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 97/171 (56%), Gaps = 18/171 (10%)
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
+G ++VETNF++Y+YS S L +L LF ++ + N+++G IT+ES+ A NGITA+Q
Sbjct: 49 DGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQ 108
Query: 310 IISFLQQNAHPRV------------------ADRIPSVPENVCDQIRLWESDLNRVEMTP 351
II++L+ +AHP++ + + +P V DQIRLW+ +L+RV
Sbjct: 109 IIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYE 168
Query: 352 AHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402
Y +F + + YA+D LLW+D KK + ++ E + + +F +
Sbjct: 169 GSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAK 219
>gi|66358470|ref|XP_626413.1| possible transcription factor TFIIH [Cryptosporidium parvum Iowa
II]
gi|46227864|gb|EAK88784.1| possible transcription factor TFIIH [Cryptosporidium parvum Iowa
II]
Length = 709
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 109/206 (52%), Gaps = 28/206 (13%)
Query: 225 KESWFIPTKLATNLSMS----LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKI 280
+E W T +N+ ++ L+ +S R E ++V++NFR+Y Y+ S L +ILR ++
Sbjct: 496 EELWHKSTTETSNVKINEPNCLSMNSTRLEAGIIVQSNFRIYCYTASPLQAKILRHLCQV 555
Query: 281 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI-----PSVPENVCD 335
+ + PN+I G +T++ L +A+ G++AEQI+ F NAHP + R +P NV
Sbjct: 556 KVRGPNIICGILTRKGLLSAYSMGVSAEQILRFFSSNAHPIILRRFMLEGTSIIPVNVET 615
Query: 336 QIRLWESDLNRVEMTPAHYYEEFPSR----DVFEAACDYARDRSGLLW------------ 379
Q++LWE D NR++++ A + ++ + +F YAR + LL+
Sbjct: 616 QLKLWEKDKNRLKISHASTFSDWGASPNDIQLFRQTILYARSKDILLYNSPIELTEKELN 675
Query: 380 ---EDSKKMRLVVNAEIHMHMREFLR 402
E KK+ LV+ E ++ F+R
Sbjct: 676 LNVELQKKIILVIKQEYEDDIKTFIR 701
>gi|85691005|ref|XP_965902.1| hypothetical protein ECU01_0670 [Encephalitozoon cuniculi GB-M1]
gi|19068469|emb|CAD24937.1| hypothetical protein [Encephalitozoon cuniculi GB-M1]
gi|449329766|gb|AGE96035.1| hypothetical protein ECU01_0670 [Encephalitozoon cuniculi]
Length = 414
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 110/204 (53%), Gaps = 17/204 (8%)
Query: 201 LSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-MSLTDSSAR-KEGFVVVETN 258
+ ++ R + K LG+++L + LA S + L ++S R + F++VETN
Sbjct: 223 VDQMDRRLFKYLEALGILRLYE---------KGLAIGRSFVQLFEASERNRREFIIVETN 273
Query: 259 FRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNA 318
++YAY+ S+ ++ LF + LPNLI G IT+ES+ AF+ GIT +QII FL+ +
Sbjct: 274 NKIYAYTNSEYEKSVIHLFCNVTVNLPNLIKGIITEESVNVAFDKGITGKQIIHFLEASV 333
Query: 319 HPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLL 378
R S+P + +QI +WES NR+ M P + Y F + ++ ++ + L+
Sbjct: 334 ------RQGSLPPAIRNQIVIWESKRNRIFMVPGYLYSNFLNLSDYQKVLEFCIRGNHLV 387
Query: 379 WEDSKKMRLVVNAEIHMHMREFLR 402
D K +VV E H ++EF++
Sbjct: 388 ESDVDKRMIVVKLEGHSLVKEFVK 411
>gi|429965574|gb|ELA47571.1| hypothetical protein VCUG_00894 [Vavraia culicis 'floridensis']
Length = 424
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 93/165 (56%), Gaps = 7/165 (4%)
Query: 242 LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 301
L S++ ++ F+VVETN+++YAY+TS I++LF +I +LPNL+V IT+ES+ AF
Sbjct: 267 LFSSASTQDSFLVVETNYKLYAYTTSSHELSIIKLFCQIIRELPNLVVAHITEESVNAAF 326
Query: 302 ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR 361
GIT +QI+ +L + + +P V +QI +WE +R++ A Y F +
Sbjct: 327 VKGITGQQIVDYLNEKSRSE-------LPVVVLEQILIWERKRDRMKCMDAVIYSHFMTY 379
Query: 362 DVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+E Y +++ L+ D + LVV E H ++ F++ K
Sbjct: 380 GEYEITYKYCKEKGALVDYDEFRRLLVVKLEYHNDVKNFIKSNIK 424
>gi|422294120|gb|EKU21420.1| transcription initiation factor TFIIH subunit 4, partial
[Nannochloropsis gaditana CCMP526]
Length = 213
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 108/216 (50%), Gaps = 39/216 (18%)
Query: 196 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR------- 248
Y + LS Q+++++ F GL+ Q R F PT +A NL T R
Sbjct: 4 YPVRALSPTQQALLEKFISFGLI-YQDDRHSRHFYPTAVAVNLIFGGTVQEERLRRGHGH 62
Query: 249 --KEG---------------FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 291
EG V+VETN+++ AY++S LH E+LR+F+ + +LPN+++G
Sbjct: 63 VGPEGRENTKELRLVDPSQLAVIVETNYQLVAYTSSSLHVEMLRIFTDVRCRLPNVVIGF 122
Query: 292 ITKESLYNAFENGITAEQIISFLQQNAHPRV-ADRIPSVPENVCDQIRLWESDLNRVEMT 350
IT+ S+ A +GITA I+SFL+ + H V A + +PENV QI LW + +RV+
Sbjct: 123 ITRASVRRAMASGITAATILSFLKTHTHVAVRAGKGRLLPENVEAQIELWHQERSRVK-- 180
Query: 351 PAHYYEEFPSRDV-------FEAACDYARDRSGLLW 379
+EE D+ FE YA + + + W
Sbjct: 181 ----FEEVMMIDLSSLMVEEFEEVRTYAENLAVVCW 212
>gi|432098035|gb|ELK27922.1| General transcription factor IIH subunit 4 [Myotis davidii]
Length = 377
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 144/321 (44%), Gaps = 59/321 (18%)
Query: 100 LNSTFQSNLQKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA 158
LN F NL+ L+ GG A + G + L+ YA +WE L + S A
Sbjct: 98 LNPVFHQNLRTALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMAGSPSA 157
Query: 159 -----ERPTNFSSSMMKVFQ----RGL---LIQSILRSLKFLCQGILEAYNLNTLSEIQR 206
+ P M++ Q RG+ I S L L F G + Y++ +S+ +R
Sbjct: 158 AFLLLDTPAQLWYFMLQHLQTAQSRGMDLVEILSFLFQLSFSSLG--KDYSVEGMSDSRR 215
Query: 207 SMIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAY 264
+ GLV Q+ RK + PT+LA +LS +S +A + GF+VVETN+++YAY
Sbjct: 216 -------EFGLV-FQRKRKSRRYYPTRLAISLSSGVSGAGGTAHQPGFIVVETNYQLYAY 267
Query: 265 STSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVAD 324
+ S+L ++ LFS++ Y+ PN++V
Sbjct: 268 TESELQIALIALFSEMLYRFPNMVVA---------------------------------- 293
Query: 325 RIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKK 384
+ P +P + DQIRLWE + +R+ T Y +F S+ F+ A + L++E+ K
Sbjct: 294 QTPVLPPTITDQIRLWELERDRLLFTEGVLYNQFLSQVDFDLLLARAWELGALVFENMAK 353
Query: 385 MRLVVNAEIHMHMREFLRGQN 405
+VV H ++ F + Q
Sbjct: 354 QLMVVTPAGHREVKRFWKQQK 374
>gi|323455511|gb|EGB11379.1| hypothetical protein AURANDRAFT_52511 [Aureococcus anophagefferens]
Length = 291
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 103/186 (55%), Gaps = 18/186 (9%)
Query: 178 IQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATN 237
+ +++ +L + G E Y ++ LSE Q++ + LGLV ++ S F PT L +
Sbjct: 46 VVALVLTLAYATPG--EGYAIHELSEAQKAALDVLFALGLV-YRRNASSSRFYPTTLGVD 102
Query: 238 LSMSLTDSS--ARKEGF------VVVETNFRMYAYS-----TSKLHCEILRLFSKIEYQL 284
++ S+ AR G V+V+TNF++ AY+ TS L L LF+++ +L
Sbjct: 103 VAFGARRSAGGARAGGDFRRPVDVIVQTNFQVLAYTDAGVNTSTLVLATLNLFAELTTRL 162
Query: 285 PNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDL 344
PNL+VG I+++++ + GI QI+ FL+ +AHP A + VP+NV DQ+ LW +
Sbjct: 163 PNLVVGTISRDAIKRCVDRGIRVPQIVKFLRAHAHP--AMKASGVPQNVTDQMALWAGEG 220
Query: 345 NRVEMT 350
NRV T
Sbjct: 221 NRVAFT 226
>gi|428181353|gb|EKX50217.1| TFB2 transcription factor B2 nucleotide excision repair [Guillardia
theta CCMP2712]
Length = 463
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 116/477 (24%), Positives = 196/477 (41%), Gaps = 102/477 (21%)
Query: 4 VKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTM 63
V+ +A V L +KLYEN + C +++R +PPL ++ + +++++ +
Sbjct: 4 VEDMAWEVCRTVGELPESACSKLYENQWACVSMMRLMPPLGRQLLMRLVHLGQE--RVEL 61
Query: 64 EEWVLPDGFTKHKV--AIDRLVQLR-LFSEEKKKET---TYRLNSTFQSNLQKHLINGGA 117
WV + ++ + ++ +++ L+ +E KE+ + R+N TF + + L+
Sbjct: 62 LRWVDEGEVQRQRLEEVVRKMEEVKILYLDEDVKESDGVSVRINPTFSERILQFLLQRDT 121
Query: 118 LPREPMPSGITARLP--TLEDLEAYAIGQWECFLLQLISSA--------QAERPT----- 162
P I P T E+L+ +A +WE L ++S +PT
Sbjct: 122 SPWSK--GRIMGDSPDTTAEELQQWAQNRWESILHYMVSPGLDPMKRPEPGWKPTKWVRG 179
Query: 163 -------NFSSSMMKV-----------FQ------RGLLIQ------------------- 179
N +S MM + FQ R ++Q
Sbjct: 180 ILVGEDKNGNSFMMSLQNLAPKITAFGFQFLLRPLRNQILQMLMHVLTKKGSENKDLQDS 239
Query: 180 -SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL 238
S + L F G Y L+ LS + +I DLG V + ++ +F PT L NL
Sbjct: 240 LSCIFQLSFCTLGA--GYRLDLLSRSNQELITSLHDLGAVYFKPNDRQ-YFFPTPLIVNL 296
Query: 239 -SMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 297
+ S S + V E +++ ILRLF++ Y+ P++I+ IT+ES+
Sbjct: 297 CTESEVPSGPSTDAGVADEF--------SAEPAAGILRLFTRPIYKFPHMIIAVITRESI 348
Query: 298 YNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEE 357
NA II +L+ +AHP+ + P VPE V DQI WE + R+ PA Y
Sbjct: 349 RNAL--------IIEYLRMHAHPQCLENWPIVPEVVTDQICFWEQERCRIRAEPAVAYHN 400
Query: 358 FPSRDVFEAACDYAR-------------DRSGLLWEDSKKMRLVVNAEIHMHMREFL 401
F S + A AR R L+ D+ + LVV +R+F+
Sbjct: 401 FFSGEAHRACEKEARRLKFNDKGPGEVAKREACLYSDTSEQLLVVPEAADPLIRKFI 457
>gi|164660182|ref|XP_001731214.1| hypothetical protein MGL_1397 [Malassezia globosa CBS 7966]
gi|159105114|gb|EDP44000.1| hypothetical protein MGL_1397 [Malassezia globosa CBS 7966]
Length = 231
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 91/148 (61%), Gaps = 9/148 (6%)
Query: 187 FLCQGILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT 243
F G LE AY S+ Q +++ +D GLV + + +F PT+LA+ L+ + +
Sbjct: 77 FFTVGGLELGRAYESRGFSQTQLQTLEELSDYGLV-YRPSKSAKYFFPTRLASTLTSTAS 135
Query: 244 DSSAR-----KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 298
+R ++G++++ETN+R+YAY+ + L IL LF ++ +LPNL++G +T+ S+
Sbjct: 136 PLLSRLNDQEEQGYLILETNYRVYAYTANLLRIAILNLFVTLKSRLPNLVIGQLTRHSVK 195
Query: 299 NAFENGITAEQIISFLQQNAHPRVADRI 326
+A GITA+QII++L +AHP++ +
Sbjct: 196 SALNKGITADQIITYLTHHAHPQMYKNV 223
>gi|449017614|dbj|BAM81016.1| similar to TFIIH subunit TFB2 [Cyanidioschyzon merolae strain 10D]
Length = 693
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 89/158 (56%), Gaps = 9/158 (5%)
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
++VETNFR+YAY+ S +L LF++I Y++P + +G IT++S+ A + GITA+Q++
Sbjct: 538 IIVETNFRLYAYAASSFQVALLSLFTRILYRMPGVAIGVITRDSVRRALKCGITAKQLLH 597
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF-PSRD---VFEAAC 368
FL ++ SVP NV DQI LWE + R++ P E F P+ D F+
Sbjct: 598 FLGIHSM-----EGKSVPFNVHDQILLWELERKRIQAYPGVLLEGFEPTSDGRAFFDQLQ 652
Query: 369 DYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
+Y + W D + LV +A +RE++R Q +
Sbjct: 653 EYTVELGAQQWCDRVRQLLVADASSFERLREWIRRQAQ 690
>gi|221482097|gb|EEE20458.1| tfiih, polypeptide, putative [Toxoplasma gondii GT1]
Length = 861
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 74/108 (68%), Gaps = 5/108 (4%)
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
E ++V++NF++Y Y+ S L +L +++ ++PNLIVG +T+ S+ A+++GITA+Q
Sbjct: 672 EAGMLVQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQ 731
Query: 310 IISFLQQNAHPRVADR-----IPSVPENVCDQIRLWESDLNRVEMTPA 352
II FL+ +AHP V +R P +PENV Q+R+WE++ R+ + PA
Sbjct: 732 IIRFLEAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 779
>gi|47212202|emb|CAF90416.1| unnamed protein product [Tetraodon nigroviridis]
Length = 471
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 157/377 (41%), Gaps = 72/377 (19%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILR--------------SLPPLAKKYV 48
V++ KN + L+ L++LY +P C A+ R LP L+K +V
Sbjct: 20 HVQLQCKNLHQYLKELSPEVLDRLYNHPATCLAVYRWPGRGPRRPRVLAPELPSLSKNFV 79
Query: 49 FQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKET--TYRLNSTFQS 106
+ML+++ +P + WV D H + L LRL+ + + Y LN F+
Sbjct: 80 MRMLFLEQPLPQAAVALWVGKDSQRDHDECVCVLAGLRLWHSQHLQGGLQGYVLNPVFKE 139
Query: 107 NLQKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFS 165
NL+ L+ GG A E G + L+ YA +WE L ++ S A S
Sbjct: 140 NLKTALLGGGRAWAEEGGALGPDRHARDIGSLDRYATERWEVILHFMVGSPCAA----VS 195
Query: 166 SSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRK 225
+ ++ L++S ++ + L+T S++
Sbjct: 196 QDLAQLLVHAGLMKSEAGEPPYITSAGFQFLLLDTASQL--------------------- 234
Query: 226 ESWFIP---TKLATNLSM-SLTDS------SARKEGFVVVETNFRMYAYSTSKLHCEILR 275
W+ K A + S+ ++DS R+ G V F+ A L
Sbjct: 235 --WYFTLQYLKTAQDYSVEGMSDSLLTFLQHLREFGLV-----FQRKASGREML------ 281
Query: 276 LFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCD 335
Y+ PN++V +T+ES+ A NGITA+Q ++F ++ P + P +P + D
Sbjct: 282 ------YRFPNVVVAQVTRESVQQAIANGITAQQRLTFDLWSS-PTPLSQTPVLPPTITD 334
Query: 336 QIRLWESDLNRVEMTPA 352
QIRLWE + +R++ T A
Sbjct: 335 QIRLWELERDRLQFTEA 351
>gi|401410644|ref|XP_003884770.1| hypothetical protein NCLIV_051680 [Neospora caninum Liverpool]
gi|325119188|emb|CBZ54742.1| hypothetical protein NCLIV_051680 [Neospora caninum Liverpool]
Length = 868
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 74/108 (68%), Gaps = 5/108 (4%)
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
E ++V++NF++Y Y+ S L +L +++ ++PNLIVG +T+ S+ A+++GITA+Q
Sbjct: 679 EAGMLVQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQ 738
Query: 310 IISFLQQNAHPRVADR-----IPSVPENVCDQIRLWESDLNRVEMTPA 352
II FL+ +AHP V +R P +PENV Q+R+WE++ R+ + PA
Sbjct: 739 IIRFLEAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 786
>gi|237842971|ref|XP_002370783.1| hypothetical protein TGME49_014520 [Toxoplasma gondii ME49]
gi|211968447|gb|EEB03643.1| hypothetical protein TGME49_014520 [Toxoplasma gondii ME49]
Length = 836
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 74/108 (68%), Gaps = 5/108 (4%)
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
E ++V++NF++Y Y+ S L +L +++ ++PNLIVG +T+ S+ A+++GITA+Q
Sbjct: 647 EAGMLVQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQ 706
Query: 310 IISFLQQNAHPRVADR-----IPSVPENVCDQIRLWESDLNRVEMTPA 352
II FL+ +AHP V +R P +PENV Q+R+WE++ R+ + PA
Sbjct: 707 IIRFLEAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 754
>gi|221502519|gb|EEE28246.1| tfiih, polypeptide, putative [Toxoplasma gondii VEG]
Length = 836
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 74/108 (68%), Gaps = 5/108 (4%)
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
E ++V++NF++Y Y+ S L +L +++ ++PNLIVG +T+ S+ A+++GITA+Q
Sbjct: 647 EAGMLVQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQ 706
Query: 310 IISFLQQNAHPRVADR-----IPSVPENVCDQIRLWESDLNRVEMTPA 352
II FL+ +AHP V +R P +PENV Q+R+WE++ R+ + PA
Sbjct: 707 IIRFLEAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 754
>gi|402465832|gb|EJW01474.1| hypothetical protein EDEG_03937 [Edhazardia aedis USNM 41457]
Length = 465
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 90/156 (57%), Gaps = 12/156 (7%)
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
E F+ +ETNF++YAY+TSK IL LFSKI +LPNLI I ++S+ AF+ I+A+Q
Sbjct: 316 ESFMYIETNFKLYAYTTSKYDFSILSLFSKISCKLPNLISAIINEDSVNTAFDKKISAKQ 375
Query: 310 IISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 369
I +L+ +VP+NV +Q+ +WES NR++ + ++ F + F+ A D
Sbjct: 376 ISYYLKSKG--------KNVPKNVVEQVYIWESKRNRIKTSECTLFKGFLNLMDFKKAVD 427
Query: 370 YARDRSGL--LWEDSKKMRLVVNAEIHMHMREFLRG 403
+++ L ++ED K + VN +E+++
Sbjct: 428 VCKEKHWLVDVYED--KRFIFVNNLYAEEFKEYIKN 461
>gi|412992644|emb|CCO18624.1| predicted protein [Bathycoccus prasinos]
Length = 464
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 77/123 (62%), Gaps = 7/123 (5%)
Query: 196 YNLNTLSEIQRSMIKDFADLGLV--KLQQGRKESWFIPTKLATNLSMSLTDSSA-----R 248
Y+ LSE +R + + LG++ +W++PT L+ LS T SSA R
Sbjct: 339 YSKANLSEAERRVASHLSALGVLYENEDDENDNNWYVPTVLSAGLSSVSTTSSAKSALAR 398
Query: 249 KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 308
+G ++VETNFR+YAY+ S+L E+LRLF++ +Y+LPN VG IT++S+ +A GI+ +
Sbjct: 399 IDGHIIVETNFRVYAYTHSELETEVLRLFTRPDYKLPNAYVGMITRDSILDAMRAGISPD 458
Query: 309 QII 311
QI+
Sbjct: 459 QIV 461
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 11 FMDMVASLTARDLNKLYE-NPFICEAILRSLPPLAKKYVFQMLYI--DGAIPAKTMEEWV 67
F++ A L+ +N LY +P+ A+LR+L PLAK+Y+ + +++ I + + W
Sbjct: 22 FVEFFAHLSEEKINHLYTISPWATLAVLRALTPLAKQYIMRCVFLPLHSVIAHEMLASWT 81
Query: 68 LPDGFTKHKVAIDRLVQLRLF 88
T H++AI+RLVQLR F
Sbjct: 82 KRGCETAHEMAIERLVQLRAF 102
>gi|71033737|ref|XP_766510.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353467|gb|EAN34227.1| hypothetical protein, conserved [Theileria parva]
Length = 359
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 113/203 (55%), Gaps = 22/203 (10%)
Query: 194 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRK----ESWFIPTKLATNLSMSLTDS---- 245
+ ++ L++ Q +++ +LG+V + +K + +I K TN + +
Sbjct: 96 DCFSTEGLTKTQLRLLRLLNELGIVYYKNPKKFYLYDLSYIVGKTNTNTGLPTSKDLDLS 155
Query: 246 -SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 304
A + ++V++NF++Y Y+ S L +L +++ + PNL+VG +T+ES+ +AF++G
Sbjct: 156 IKAGNDSRIIVQSNFKVYVYTASPLQISVLSHLCELQARTPNLVVGVLTRESVQSAFKSG 215
Query: 305 ITAEQIISFLQQNA-HPRVADR---------IPSVPENVCDQIRLWESDLNRVEMTPAHY 354
IT+++II FL N + + ++ S+PENVC Q+++WES+ +R+E+ P+
Sbjct: 216 ITSKEIIRFLSPNGMNSSIGNQENTLLNSTFTYSIPENVCRQLKMWESERDRIELCPSIV 275
Query: 355 YEEFPSR---DVFEAACDYARDR 374
++ + D+F+ +A+ +
Sbjct: 276 FKRWDQDFMPDLFQRTVRWAQSK 298
>gi|84998132|ref|XP_953787.1| TFIIH subunit, Tf2b [Theileria annulata]
gi|65304784|emb|CAI73109.1| TFIIH subunit, Tf2b homologue, putative [Theileria annulata]
Length = 645
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 114/206 (55%), Gaps = 28/206 (13%)
Query: 194 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRK----ESWFIPTKLATN--------LSMS 241
+ ++ L++ Q +++ +LG+V + +K + +I K TN L +S
Sbjct: 383 DCFSTEGLTKTQIRLLRLLNELGIVYYKNPKKFYLYDLSYIVGKTNTNSVLPNSKDLDIS 442
Query: 242 LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 301
+ A + ++V++NF++Y Y+ S L +L +++ + PNL+VG +T+ES+ +AF
Sbjct: 443 I---KAGNDSRIIVQSNFKVYVYTASPLQISVLSHLCELQARTPNLVVGVLTRESVQSAF 499
Query: 302 ENGITAEQIISFLQQNA-HPRVADR---------IPSVPENVCDQIRLWESDLNRVEMTP 351
++GIT+++II FL N + + + S+PENVC Q+++WES+ +R+E+ P
Sbjct: 500 KSGITSKEIIRFLSPNGMNSSIGSQENTLLNSSFTYSIPENVCRQLKMWESERDRIELCP 559
Query: 352 AHYYEEFPSR---DVFEAACDYARDR 374
+ ++ + D+F+ +A+ +
Sbjct: 560 SIVFKRWDQDFMPDLFQRTVRWAQSK 585
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 6 IIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEE 65
II +NF + + L + +L+ A+ RSL L K +F++LYID +I K +
Sbjct: 20 IIEENFFNYLKELDEQVWERLFRVKACLVALFRSLGELEKLIIFRLLYIDQSISEKPLRL 79
Query: 66 WVLPDGFTKHKVAIDRLVQLRLFS-------EEKKKETTYRLNSTFQS 106
W+ K ++ L ++ + +EK++ Y+LN F++
Sbjct: 80 WMRAHSIADLKHSLTLLQSYKIITVLENTTNDEKQQ---YKLNDGFKN 124
>gi|123488965|ref|XP_001325283.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121908180|gb|EAY13060.1| hypothetical protein TVAG_212420 [Trichomonas vaginalis G3]
Length = 460
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/410 (22%), Positives = 169/410 (41%), Gaps = 68/410 (16%)
Query: 33 CEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRL--FSE 90
C +R LPPL+++ +F++LYI+ P +E+W AI +L++ L
Sbjct: 26 CRTYIRLLPPLSQQILFRLLYIERGFPRSEVEKWSPKSKSNDLINAIKKLIKAHLVYIVT 85
Query: 91 EKKKETTYRLNSTFQSN-------LQKHLINGGALPREPMPSGIT--------------- 128
+ E +Y NS+ N L ++ + A R+ P
Sbjct: 86 DTISENSY--NSSIIINKRVREVLLGTYVEDKKAFVRQKNPFAPDDQPDENFVPFDELDQ 143
Query: 129 ARLPT-----LEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVF--------QRG 175
++ PT L+D Y + F+L+L + E S + + F R
Sbjct: 144 SKFPTIDEKILDDFSNYQLESILSFMLKLRDNIDNEAKKILSDAKLMEFGGNLCPKGHRF 203
Query: 176 LLI-----------------QSILRSLKFLCQ-GILE---AYNLNTLSEIQRSMIKDFAD 214
LL+ + + SL+FL + G +E Y + +L+ Q+ ++ F
Sbjct: 204 LLLSPKEQIWRIVKCYLKFTKDLHSSLRFLLKIGSMELSKGYPITSLTPTQKELLSPFKT 263
Query: 215 LGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEIL 274
+GLV + +F PTK N + + EG+++++TNF++ A+ S LH +L
Sbjct: 264 IGLVYIDG----DYFYPTKSILNFFGK--SNIFQTEGWMLIDTNFKITAFPKSPLHTALL 317
Query: 275 RLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVC 334
+ F+ + Y+ P I+ S A G T + II FL+ N ++ +P V
Sbjct: 318 KKFANVTYEFPGFASAFISPNSFREALNQGTTLDDIIGFLKSNLSHKIGSG--QIPSAVM 375
Query: 335 DQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKK 384
Q +W R+ +T ++ + + A A+ +G ++ ++K
Sbjct: 376 KQFYVWRDQRERLTVTHECIMRQYTNPNDANLAAQCAKQLAGYVYGPAEK 425
>gi|403221352|dbj|BAM39485.1| transcription factor IIH subunit [Theileria orientalis strain
Shintoku]
Length = 634
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 113/203 (55%), Gaps = 24/203 (11%)
Query: 194 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRK----ESWFIPTKLATNLSMSL-----TD 244
+ ++ L++ Q +++ +LG+V + + + +I K +N+++ L +
Sbjct: 355 DCFSTENLTKTQMRLVRLLNELGIVYYKNANRFYIYDLSYIIGK--SNINVDLFKEFDVN 412
Query: 245 SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 304
+A E ++V++NF++Y Y+ S L +L +++ + PNL+VG +T+ES+ +AF++G
Sbjct: 413 KTAGNESRIIVQSNFKVYVYTASPLQISVLSHLCELQARTPNLVVGVLTRESVQSAFKSG 472
Query: 305 ITAEQIISFLQ--------QNAHPRVADRIPS--VPENVCDQIRLWESDLNRVEMTPAHY 354
IT+ +II FL D + +PENVC Q+++WES+ +R+E++PA
Sbjct: 473 ITSNEIIRFLSPMKLSLSYAGTCNSFMDSFANYKIPENVCRQLKMWESERDRIELSPAIL 532
Query: 355 YEEFPSR---DVFEAACDYARDR 374
++ + + ++F+ +A+ +
Sbjct: 533 FKRWDADFMPELFQRTVRWAQSK 555
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 6 IIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEE 65
+I +NF + + L R +L++ A+ RSL L K ++++LYI+ A+ + +
Sbjct: 20 VIEENFFNYLKELDERVWQRLFQVKACLLALFRSLGELEKLIIYRLLYINQAVSERALRL 79
Query: 66 WVLPDGFTKHKVAIDRLVQLRLF--SEEKKKE--TTYRLNSTFQSNLQKHLIN 114
W+ + K A L ++ SE KE +RL+ F++ L L N
Sbjct: 80 WMCSHSISDLKNAFTLLQSYKIIQASETTTKEGKQQFRLHPDFKNGLISLLSN 132
>gi|428673252|gb|EKX74165.1| conserved hypothetical protein [Babesia equi]
Length = 668
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 77/124 (62%), Gaps = 7/124 (5%)
Query: 229 FIPTKLATNLSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI 288
+P+ ++ S++ +S ++V++NF++Y Y+ + L +IL + +++ + PN++
Sbjct: 470 LVPSNSPLSVHTSISFTSEYLPSKIIVQSNFKVYVYTVNNLQFDILNILCEVQARTPNMV 529
Query: 289 VGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVE 348
VG +T+ES AF++GIT+ +II F + + PENV Q+R+WE++ NRVE
Sbjct: 530 VGVLTRESAQRAFKSGITSHEIIRFFS-------STNTSTFPENVIRQLRMWEAERNRVE 582
Query: 349 MTPA 352
++PA
Sbjct: 583 LSPA 586
>gi|387595518|gb|EIJ93142.1| hypothetical protein NEPG_02098 [Nematocida parisii ERTm1]
Length = 398
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 15/191 (7%)
Query: 212 FADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHC 271
F LGL+ ++G K + S+ L D E F+V+E+NFR+Y YS L
Sbjct: 219 FESLGLIFFEKG-------LVKFSPTFSL-LFDDEEGAEKFLVLESNFRLYIYSNRPLDT 270
Query: 272 EILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPE 331
I+ LFS + PN+IV I ++S+ A +GITA QI +L QN+ + + E
Sbjct: 271 FIISLFSIKSREFPNMIVAMINEDSIRQALMHGITAGQIRVYLNQNS-------MYEINE 323
Query: 332 NVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNA 391
NV +QIRLWE +NR+ ++ + F + F Y + + +K LVV
Sbjct: 324 NVIEQIRLWEKRMNRIHSWESYIFSNFLNYKDFLLVESYCENNNIDHRSYREKRMLVVGI 383
Query: 392 EIHMHMREFLR 402
E + ++ F+R
Sbjct: 384 ENYESVKSFIR 394
>gi|302831319|ref|XP_002947225.1| hypothetical protein VOLCADRAFT_35893 [Volvox carteri f.
nagariensis]
gi|300267632|gb|EFJ51815.1| hypothetical protein VOLCADRAFT_35893 [Volvox carteri f.
nagariensis]
Length = 90
Score = 89.4 bits (220), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 54/85 (63%)
Query: 304 GITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDV 363
GI A++++S+L HP +A R P VPE V DQIRLWE+ +NR+ YE SR++
Sbjct: 1 GIAADELVSYLAARPHPSIASRTPVVPEVVSDQIRLWEASMNRLRADSVVLYENLASREL 60
Query: 364 FEAACDYARDRSGLLWEDSKKMRLV 388
FE A ++R LLWEDS +MR V
Sbjct: 61 FERALAFSRSSGTLLWEDSGQMRFV 85
>gi|378754852|gb|EHY64880.1| hypothetical protein NERG_01936 [Nematocida sp. 1 ERTm2]
Length = 396
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 15/195 (7%)
Query: 208 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVETNFRMYAYSTS 267
M+ F LGL+ ++G + ++ S+ L D E F+ +E+NFR+Y YS
Sbjct: 213 MLDLFESLGLITFERG-------LVRFSSTFSL-LFDDEEGGEKFLTLESNFRLYIYSNR 264
Query: 268 KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIP 327
L I+ LFS + PN+IV I ++S+ A GITA QI +L QN+ +
Sbjct: 265 PLDVFIISLFSIKIREFPNMIVAMINEDSIRQALTYGITAGQIRVYLNQNS-------MH 317
Query: 328 SVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRL 387
+ ENV +QIRLWE +NR+ ++ + F + F Y + + K L
Sbjct: 318 KINENVLEQIRLWEKRMNRIHAWESYIFSNFLNYKDFLLVESYCENNNVEHRSYRDKRVL 377
Query: 388 VVNAEIHMHMREFLR 402
VV E + +++ F+R
Sbjct: 378 VVGVENYDNVKSFIR 392
>gi|387592902|gb|EIJ87926.1| hypothetical protein NEQG_01998 [Nematocida parisii ERTm3]
Length = 398
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 95/191 (49%), Gaps = 15/191 (7%)
Query: 212 FADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHC 271
F LGL+ ++G K + S+ L D E F+V+E+NFR+Y YS L
Sbjct: 219 FESLGLIFFEKG-------LVKFSPTFSL-LFDDEEGAEKFLVLESNFRLYIYSNRPLDT 270
Query: 272 EILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPE 331
I+ LFS + PN++V I ++S+ A +GITA QI +L QN+ + + E
Sbjct: 271 FIISLFSIKSREFPNMMVAMINEDSIRQALMHGITAGQIRVYLNQNS-------MYEINE 323
Query: 332 NVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNA 391
NV +QIRLWE +NR+ ++ + F + F Y + + +K LVV
Sbjct: 324 NVIEQIRLWEKRMNRIHSWESYIFSNFLNYKDFLLVESYCENNNIDHRSYREKRMLVVGI 383
Query: 392 EIHMHMREFLR 402
E + ++ F+R
Sbjct: 384 ENYESVKSFIR 394
>gi|209880858|ref|XP_002141868.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209557474|gb|EEA07519.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 794
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 80/141 (56%), Gaps = 9/141 (6%)
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
E ++V++NFR+Y Y+ S L +ILR +++ + PN+I G +T+ L +A+ G+ A Q
Sbjct: 603 EAGIIVQSNFRVYCYTASPLQAKILRHLCQVKVRGPNIICGVLTRRGLLSAYSMGVKAYQ 662
Query: 310 IISFLQQNAHP-----RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR--- 361
I+ F NAHP + D +P +V Q++LWE+D NR+E+ + ++ +
Sbjct: 663 ILRFFISNAHPIILKKHITDGTSIIPISVETQLKLWENDHNRLEINKVSLFSDWGNNKED 722
Query: 362 -DVFEAACDYARDRSGLLWED 381
++F+ YA + +L+ +
Sbjct: 723 IELFKQTVTYAIGKQVVLYHN 743
>gi|399949686|gb|AFP65344.1| tfIIB-like protein [Chroomonas mesostigmatica CCMP1168]
Length = 464
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
+++E+NFR+Y Y + L ++L +FS+I YQLPNL VG IT++S+ AF +G T+ II
Sbjct: 329 IIIESNFRIYVYKNAHLGNDLLLVFSEILYQLPNLFVGEITEKSILKAFNSGSTSRNIIG 388
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPA 352
FL+ N HP P +P V +QI+ WE +++T +
Sbjct: 389 FLKNNLHPIC----PWIPSAVTNQIKAWEFQKTEIKITES 424
>gi|60603004|gb|AAX27959.1| unknown [Schistosoma japonicum]
Length = 100
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 54/76 (71%)
Query: 245 SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 304
SS+ G++++ETNFR+YAY+ S L +L LFSKI + PNL+V IT++S+ A G
Sbjct: 8 SSSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITRDSVREALIRG 67
Query: 305 ITAEQIISFLQQNAHP 320
ITA QI+SFL NAHP
Sbjct: 68 ITANQILSFLTSNAHP 83
>gi|389586531|dbj|GAB69260.1| hypothetical protein PCYB_146880 [Plasmodium cynomolgi strain B]
Length = 913
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 70/106 (66%)
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
++V++NF++Y Y+ S L IL +++ + PN++VG +T+ S+ NA+ + ITA QII
Sbjct: 733 LIVQSNFKVYLYTNSTLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIK 792
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF 358
FL+ AHP ++ S+P NV Q++LWES+ +R+ + A ++ F
Sbjct: 793 FLESYAHPGRSNFKSSIPVNVITQLKLWESERHRLTLDDAIVFKSF 838
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 16/158 (10%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGF 72
D + L + + L+E+ EAILRSL L + + ++L+I + + M W+ P+
Sbjct: 15 DYMKELNEKIWSYLFEDSLAHEAILRSLNELEQIIISRLLFIQQVVSERAMRLWINPNSL 74
Query: 73 TKHKVAIDRLVQLRLFSEEKKKETTYR------------LNSTFQSNLQKHLI-NGGALP 119
K I LV+ ++ E + K+ Y LN +++ K I N A
Sbjct: 75 KKLSECIKNLVEAKILVESETKKDNYNQYKINEKFRHTMLNKIYKNREDKIFIFNNNAKE 134
Query: 120 REPMPSGITAR--LPTLEDLEAYAIGQWECFLLQLISS 155
+ + + PT E++ YA +W LL I+S
Sbjct: 135 QMEKEKNLHEKNLYPTKEEIANYAQMRWNN-LLHFIAS 171
>gi|403348380|gb|EJY73625.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Oxytricha trifallax]
Length = 532
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 79/130 (60%), Gaps = 20/130 (15%)
Query: 207 SMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS-----------------SARK 249
S+++DF D+GLV +++ +K F+ T L + S T S +
Sbjct: 264 SILRDFDDMGLVGMERRQK---FVITSLLQSFLQSQTGQLQKSSDSSSSNVIDAQRSQSQ 320
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
+ F++VETNF++YAY++S L+ +LR F ++E PNL+VG +T++SL AF+ GI++ Q
Sbjct: 321 DKFLIVETNFKVYAYTSSDLYRALLRQFIRVECIFPNLVVGTLTRKSLQKAFQRGISSGQ 380
Query: 310 IISFLQQNAH 319
I+SFL+ + H
Sbjct: 381 ILSFLESHIH 390
>gi|221061889|ref|XP_002262514.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
gi|193811664|emb|CAQ42392.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
Length = 943
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 70/106 (66%)
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
++V++NF++Y Y+ S L IL +++ + PN++VG +T+ S+ NA+ + ITA QII
Sbjct: 763 LIVQSNFKVYLYTNSTLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIK 822
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF 358
FL+ AHP ++ S+P NV Q++LWES+ +R+ + A ++ F
Sbjct: 823 FLESYAHPGRSNFKSSIPVNVITQLKLWESERHRLTLDDAIVFKSF 868
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGF 72
D + L+ + L+E+ EAIL+SL L + + ++L+I + + M W+ P+
Sbjct: 15 DYMKELSEKIWTYLFEDSLAHEAILQSLNELEQIIISRLLFIQQVVSERAMRLWINPNSL 74
Query: 73 TKHKVAIDRLVQLRLFSEEKKKETT---YRLNSTFQ 105
K I LV+ ++ E + K+ YR+N F+
Sbjct: 75 KKLSECIKNLVEAKILVESETKKDNYNQYRINEKFR 110
>gi|124806778|ref|XP_001350829.1| transcription factor Tfb2, putative [Plasmodium falciparum 3D7]
gi|23496958|gb|AAN36509.1| transcription factor Tfb2, putative [Plasmodium falciparum 3D7]
Length = 945
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 90/152 (59%), Gaps = 9/152 (5%)
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
++V++NF++Y Y++S L IL +++ + PN++VG +T+ S+ NA+ + ITA QII
Sbjct: 766 LIVQSNFKVYLYTSSLLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIK 825
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR---DVFEAACD 369
FL+ +HP + S+P NV Q++LWES+ +R+ + A ++ F +++
Sbjct: 826 FLESYSHPGKNNFKSSIPMNVITQLKLWESERHRLTLEDAIVFKSFEKDFMPHLYQQIVI 885
Query: 370 YARDRSGLLW------EDSKKMRLVVNAEIHM 395
+A ++ LL+ ++K+ L + AE ++
Sbjct: 886 WANSKNYLLYYTPWPKNNTKEFDLWIKAEKYL 917
>gi|156086630|ref|XP_001610724.1| hypothetical protein [Babesia bovis T2Bo]
gi|154797977|gb|EDO07156.1| conserved hypothetical protein [Babesia bovis]
Length = 586
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 76/118 (64%), Gaps = 6/118 (5%)
Query: 238 LSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 297
+SMS+ + K +VV++NF++YAY S L +L +++ + PNL++G +T+ SL
Sbjct: 384 ISMSVCGNKGSK---MVVQSNFKIYAYIPSALQMNVLNHICELQAKTPNLVIGVLTRSSL 440
Query: 298 YNAFENGITAEQIISFLQ---QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPA 352
AF++GITA+Q+I F + Q ++ + +VPENV Q+++WE++ NR+E+ A
Sbjct: 441 QTAFKSGITADQLICFFESKGQYDDIQINRNVMNVPENVRRQLKMWEAERNRLELLNA 498
>gi|156095867|ref|XP_001613968.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148802842|gb|EDL44241.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 960
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 69/106 (65%)
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
++V++NF++Y Y+ S L IL +++ + PN++VG +T+ S+ NA+ + ITA QII
Sbjct: 780 LIVQSNFKVYLYTNSTLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIK 839
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF 358
FL+ AHP + S+P NV Q++LWES+ +R+ + A ++ F
Sbjct: 840 FLESYAHPGRSTFKSSIPVNVITQLKLWESERHRLTLDDAIVFKSF 885
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGF 72
D + ++ + L+E+ EAIL SL L + + ++L+I + + M W+ P+
Sbjct: 15 DYMKEMSEKIWTYLFEDSLAHEAILHSLNELEQIIISRLLFIQQVVSERAMRLWINPNSL 74
Query: 73 TKHKVAIDRLVQLRLFSEEKKKETT---YRLNSTFQSNL 108
K I LV+ ++ E + K+ Y++N F+ +
Sbjct: 75 KKLSECIKNLVEAKILVESETKKDNYNQYKINEKFRHTM 113
>gi|397564488|gb|EJK44232.1| hypothetical protein THAOC_37249 [Thalassiosira oceanica]
Length = 971
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 24/224 (10%)
Query: 184 SLKFL-CQG---ILEAYNLNTL-SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL 238
+L FL C G I E Y + L S+ R ++KDFA GL+ + + ++ F PT++A NL
Sbjct: 329 ALSFLICLGSCRIGEGYFSSVLGSKSARVLMKDFARFGLLFVCRVAGKTAFYPTRVAVNL 388
Query: 239 SMSLTDSSARKEGFVVVETNFR------MYAYSTSKLHCEILRLFSKIEYQ-LPNLIVGA 291
S +R+ ++ M A ++ H + I Y+ LPN++
Sbjct: 389 VASNEKGGSRQSDALLPSVAATRSLEEAMNAPDPTRSHLAV------ISYKRLPNVVFFH 442
Query: 292 ITKESLYNAFENGITAEQIISFLQQNAHPRV-ADRIPSVPENVCDQIRLWESDLNRVEMT 350
+T++S+ +AF G+TA+QI+ FLQ +AHP + + P P NV DQI LW+ + RV M
Sbjct: 443 LTRDSIKSAFRLGVTADQILRFLQVHAHPMMRSGNQPMPPANVRDQILLWDRERRRVVMD 502
Query: 351 PAHYYEEFPSRD--VFEAACDYARDRSGLLWEDSKKMRLVVNAE 392
++ RD F A YA D L W ++ +L + +
Sbjct: 503 EVWVHQ---CRDDAEFSAVGMYASDSEALAWGNAHTNKLYLQCD 543
>gi|429854513|gb|ELA29524.1| tfiih and nucleotide excision repair factor 3 complexes subunit
[Colletotrichum gloeosporioides Nara gc5]
Length = 509
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 5/101 (4%)
Query: 249 KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 308
+ G ++VETN+R+YAY + L +L LF K++ + +++ G +T+ S+ NA E GITA+
Sbjct: 369 RSGSIIVETNYRVYAYGQTPLQIAVLSLFCKLKLRFADMVSGRLTRNSIRNAVERGITAD 428
Query: 309 QIISFLQQNAHPRV-----ADRIPSVPENVCDQIRLWESDL 344
QIIS+L +AH ++ P +P V DQIRL D+
Sbjct: 429 QIISYLASHAHEQMHRFAAVRNKPVLPPTVIDQIRLEYEDI 469
>gi|399219100|emb|CCF75987.1| unnamed protein product [Babesia microti strain RI]
Length = 612
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 65/104 (62%), Gaps = 4/104 (3%)
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
E ++V++NF++Y Y+ S L +L +++ + PNL++G +T+ S + AF GITA+Q
Sbjct: 429 ESGIIVQSNFKVYVYTASPLQINVLAHLCELQSRTPNLVIGVLTRASAHAAFRAGITAKQ 488
Query: 310 IISFLQQNAHP----RVADRIPSVPENVCDQIRLWESDLNRVEM 349
I FL+ ++HP V + +P NV Q+ +WE++ NR+ +
Sbjct: 489 ICQFLETHSHPILLQNVREGGSYLPNNVVTQLNMWEAERNRISL 532
>gi|322785901|gb|EFZ12520.1| hypothetical protein SINV_14207 [Solenopsis invicta]
Length = 170
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 14/160 (8%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
KN + + S T LNKLY P IC A+ R LP +AK YV ++L+++ +P + W
Sbjct: 16 CKNLHEYLKSRTPETLNKLYHKPPICLAVFRELPVIAKNYVMRLLFVEQPVPQAVIASWC 75
Query: 68 LPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGGALPREPMPS 125
F +H+ + L +L ++ E + LN+TF+ NL+ L+ GG P
Sbjct: 76 SKLYFEEHQKVVQVLNELYVWKEASIPGGLPGWILNNTFKKNLKIVLLGGGK------PW 129
Query: 126 GITARLPT------LEDLEAYAIGQWECFLLQLISSAQAE 159
++ +L T + L++YA+ +WEC L ++ S Q E
Sbjct: 130 TMSNQLETDSKPRDVAFLDSYALERWECVLHYMVGSQQQE 169
>gi|67483069|ref|XP_656826.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56474050|gb|EAL51440.1| hypothetical protein EHI_192400 [Entamoeba histolytica HM-1:IMSS]
gi|449706224|gb|EMD46115.1| tfiih basal transcription factor complex p52 subunit, putative
[Entamoeba histolytica KU27]
Length = 484
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 100/448 (22%), Positives = 198/448 (44%), Gaps = 65/448 (14%)
Query: 6 IIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTM-E 64
II K+ + L + Y++ + C I R LP + + + +++++ I M
Sbjct: 5 IIEKDIIKYFQVLPEIAMKSAYKSKWTCSEIFRLLPGMCQSLLLRIIFLTERISINEMYN 64
Query: 65 EWVLPDGFTKHKVAIDRLVQLRLFSEEKKKETTY-RLNSTFQSNLQKHLINGGALPREPM 123
++ +P+ I+ + + + +E++ Y +LN+ FQSN + +L G P +
Sbjct: 65 QFKIPNETMDE--VINTIHSIHIIDKEEEDGILYIKLNNDFQSNFKMNL-TGSMEPAYKI 121
Query: 124 P--SGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSI 181
+ +++ + L+ I +E F+ +L+ Q N S++ +++F+ L++
Sbjct: 122 KEVNEKVSKIIQEKCLKENCIKTFEYFMNKLL---QFNSQPNISNNPLRIFKDLELVKEE 178
Query: 182 LRSL-----KFLCQGI---LEAYNLNTLSEIQRSM---IKDFADLGLVK------LQQGR 224
R + +FL Q L L+ + IQR + I D ++ +K +
Sbjct: 179 TRQITRKGYQFLFQETKTQLWVIMLSIIGLIQRRISPFINDVFEMTYLKEHIIYNCDHFK 238
Query: 225 KESWFIPTKLATNLS----------------MSLTDSSAR------KEGFVVVETNFRMY 262
K P +L +L MSL S+A K+ + E N+ +Y
Sbjct: 239 KVYGPDPLQLFNDLGIIVYYKEQNVMAITPLMSLLRSNANIPSDLVKKPKTITEINYSVY 298
Query: 263 AYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV 322
Y+ S+ ++ RLF + +QL NL VG + +S+ AF GIT+E +I+FLQ
Sbjct: 299 IYTESQFQVDLYRLFIRKNFQLANLWVGKLNHQSVTEAFAKGITSEMLINFLQ------- 351
Query: 323 ADRIPSVPENVCDQIRLWESDLNRVE---MTPAHYYEEFPSRDVFEAACDYARDRSGLLW 379
P++P + QI LW+ ++NR + + +Y++ R +F DR
Sbjct: 352 ----PNLPRTIQKQIDLWKKEINRFKEEHVVRYRFYDDAIGRQLF-VIVKNESDRLKATI 406
Query: 380 EDSKKMRLV-VNAEIHMHMREFLRGQNK 406
+ + +RL+ V + +R F++ + +
Sbjct: 407 LEKEDIRLIFVKYQYGETIRSFMKKKER 434
>gi|167395228|ref|XP_001741280.1| TFIIH basal transcription factor complex p52 subunit [Entamoeba
dispar SAW760]
gi|165894177|gb|EDR22239.1| TFIIH basal transcription factor complex p52 subunit, putative
[Entamoeba dispar SAW760]
Length = 489
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 97/415 (23%), Positives = 182/415 (43%), Gaps = 83/415 (20%)
Query: 6 IIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQM-----------LYI 54
II K+ + L + Y++ + C I R LP + + + ++ LY
Sbjct: 5 IIEKDIIKYFQVLPEIAMKSAYKSKWTCSEIFRLLPGMCQSLLLRIIFLKERITIHELYN 64
Query: 55 DGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKETTY-RLNSTFQSNLQKHLI 113
IP +TM+E I+ + + + +E++ Y +LN+ FQ+N + +LI
Sbjct: 65 QFKIPNETMDE------------VINTIHSIHIIDKEEENGILYIKLNNDFQNNFKMNLI 112
Query: 114 NGGALPREPMP--SGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKV 171
G P + + +++ + L+ I +E F+ +L+ Q N S++ +++
Sbjct: 113 -GSMEPAYKIKEVNEKVSQIIKEKCLKENCIKTFEYFMNKLL---QFNSQPNISNNPLRI 168
Query: 172 FQRGLLIQSILRSL-----KFLCQGI---LEAYNLNTLSEIQRSM---IKDFADLGLVK- 219
F+ L++ R + +FL Q L L+ + IQR + I D ++ +K
Sbjct: 169 FKDLELVKEETRQITRKGYQFLFQETKTQLWVIMLSIIGLIQRRISPFINDVFEMTYLKE 228
Query: 220 -----LQQGRKESWFIPTKLATNLS----------------MSLTDSSAR------KEGF 252
+ +K P +L +L MSL S+A K+
Sbjct: 229 NIIYNCDRFKKVYGPDPLQLFNDLGIIVYYKEQNVMAITPLMSLLRSNANIPSDLVKKPK 288
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
+ E N+ +Y Y+ S+ ++ RLF + +QL NL VG + +S+ AF GIT+E +I+
Sbjct: 289 TITEINYSVYIYTESQFQVDLYRLFIRKNFQLANLWVGKLNHQSVTEAFAKGITSEMLIN 348
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVE---MTPAHYYEEFPSRDVF 364
FLQ P++P + QI LW+ ++NR + + +Y++ R +F
Sbjct: 349 FLQ-----------PNLPRTIQKQIDLWKKEINRFKEEHVVRYKFYDDAIGRQLF 392
>gi|82704497|ref|XP_726580.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23482045|gb|EAA18145.1| Drosophila melanogaster LD30622p-related [Plasmodium yoelii yoelii]
Length = 926
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 69/106 (65%)
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
+++++NF++Y Y++S L IL +++ + PN++VG +T+ S+ NA+ + ITA+QII
Sbjct: 746 LIIQSNFKVYLYTSSILKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITADQIIK 805
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF 358
FL+ +HP +P NV Q++LWE++ +R+ + + ++ F
Sbjct: 806 FLESYSHPGKTKLKSIIPINVITQLKLWEAERHRLTLEDSIVFKNF 851
>gi|70950974|ref|XP_744765.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56524852|emb|CAH80923.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 922
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 69/106 (65%)
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
+++++NF++Y Y++S L IL +++ + PN++VG +T+ S+ NA+ + ITA+QII
Sbjct: 742 LIIQSNFKVYLYTSSILKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITADQIIK 801
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF 358
FL+ +HP +P NV Q++LWE++ +R+ + + ++ F
Sbjct: 802 FLESYSHPGKTKLKSIIPINVITQLKLWEAERHRLTLEDSIVFKNF 847
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 16/158 (10%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGF 72
D + + A+ L+++ E I SL L + + ++L+I + + M W+ P+
Sbjct: 15 DYMKEMDAKIWEYLFDDSLAHETIFNSLNELEQIIISRLLFIQQVVSERAMRLWINPNFL 74
Query: 73 TKHKVAIDRLVQLRLFSEEKKKETTYR------------LNSTFQSNLQKHLI--NGGAL 118
K +I LV +++ E + K+ Y LN +Q++ I N L
Sbjct: 75 KKLSESIKNLVDVKILVESETKKDNYNQYKINDRFRLTLLNKIYQNDKSNIFIFNNNIKL 134
Query: 119 PREPMPSGITARL-PTLEDLEAYAIGQWECFLLQLISS 155
+L PT E + YA +W LL I+S
Sbjct: 135 QLNKEKELYEKKLFPTKEGILCYASARWNT-LLHFIAS 171
>gi|68070707|ref|XP_677265.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56497310|emb|CAH94094.1| conserved hypothetical protein [Plasmodium berghei]
Length = 929
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 69/106 (65%)
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
+++++NF++Y Y++S L IL +++ + PN++VG +T+ S+ NA+ + ITA+QII
Sbjct: 749 LIIQSNFKVYLYTSSILKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITADQIIK 808
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF 358
FL+ +HP +P NV Q++LWE++ +R+ + + ++ F
Sbjct: 809 FLESYSHPGKTKLKSIIPINVITQLKLWEAERHRLILEDSIVFKNF 854
>gi|440295536|gb|ELP88449.1| TFIIH basal transcription factor complex p52 subunit, putative
[Entamoeba invadens IP1]
Length = 531
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 85/161 (52%), Gaps = 20/161 (12%)
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
+ ETN+ +Y Y+ S ++ LF + QL NL VG IT +++ AF GIT E +++
Sbjct: 290 TITETNYTVYIYTESFFQVKLYSLFIRQNLQLTNLCVGRITYDTVTEAFLKGITNEMLVN 349
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPA---HYYEEFP----SRDVFE 365
FLQ P++P+N+ QI LW+ +LNR++ A +YE P ++++
Sbjct: 350 FLQ-----------PNLPKNIQAQIDLWKRELNRLKEVRAVKFRFYE--PELEVQKELYH 396
Query: 366 AACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
A G+++ +++ L V ++ ++EFLR + +
Sbjct: 397 LTKSEAEKMKGVVFYKEEELTLFVRYDVAEKIKEFLRRKTR 437
>gi|160331881|ref|XP_001712647.1| hypothetical protein HAN_3g523 [Hemiselmis andersenii]
gi|159766096|gb|ABW98322.1| hypothetical protein HAN_3g523 [Hemiselmis andersenii]
Length = 432
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 60/97 (61%), Gaps = 4/97 (4%)
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 312
+++E+N+R+Y Y + + ++ +FS+I Y LPN VG IT+ S+ A ++GIT + I+
Sbjct: 300 IIIESNYRIYVYQKNSNNNQLFLIFSEILYILPNFFVGEITETSISRALKSGITIQNILG 359
Query: 313 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEM 349
F+++N H S+P + +Q RLWE ++++
Sbjct: 360 FIRENLHCVCR----SIPSTILNQFRLWEFQKKKIKI 392
>gi|380476902|emb|CCF44454.1| RNA polymerase II transcription factor B subunit 2 [Colletotrichum
higginsianum]
Length = 126
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 9/126 (7%)
Query: 287 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPR------VADRIPSVPENVCDQIRLW 340
++ G +T+ S+ NA E GITA+QIIS+L +AH + V R P +P V DQIRLW
Sbjct: 1 MVSGRLTRNSIRNAVERGITADQIISYLAAHAHEQMHRMAAVRSR-PVLPPTVVDQIRLW 59
Query: 341 ESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 400
+ + R+ T + +F S +E YA + L+W + K A H +R++
Sbjct: 60 QLETERMTTTSGFLFRDFDSPKEYEVIAGYASEIGVLVWRNDKLGMFF--ASKHEQIRDY 117
Query: 401 LRGQNK 406
L+ + K
Sbjct: 118 LKLRKK 123
>gi|238570605|ref|XP_002386883.1| hypothetical protein MPER_14683 [Moniliophthora perniciosa FA553]
gi|215440101|gb|EEB87813.1| hypothetical protein MPER_14683 [Moniliophthora perniciosa FA553]
Length = 69
Score = 71.6 bits (174), Expect = 6e-10, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 5/69 (7%)
Query: 246 SARKEGFVVVETNFRMYAYSTS-----KLHCEILRLFSKIEYQLPNLIVGAITKESLYNA 300
S ++GF+V+ETN+R+YAY+ S L IL LF ++Y+ PNL+VG+IT+ES+ A
Sbjct: 1 SGSQQGFIVLETNYRVYAYTGSFSLHNPLQTAILHLFVSLKYRFPNLVVGSITRESVKKA 60
Query: 301 FENGITAEQ 309
NGI+A+Q
Sbjct: 61 LSNGISADQ 69
>gi|167535774|ref|XP_001749560.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771952|gb|EDQ85611.1| predicted protein [Monosiga brevicollis MX1]
Length = 417
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 80/150 (53%), Gaps = 8/150 (5%)
Query: 191 GILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE 250
+LE ++ L+ +Q + ++ +G+V + RK F T A L + + ++ E
Sbjct: 233 SVLE-FSAENLTTMQITFLRQLHYMGVV-YHRNRKSKRFFLTPYAVMLYHNAELALSQTE 290
Query: 251 -GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 309
GF++ ETNF +YAY+ S + +L F+ + Y+LP + IT+ S+ A GITA+Q
Sbjct: 291 TGFLLAETNFHVYAYTDSAVKVALLSKFATLTYRLPIMTTAIITRTSVRRALSQGITADQ 350
Query: 310 IISFLQQNA-----HPRVADRIPSVPENVC 334
I+ F+Q+++ H A P+ P++
Sbjct: 351 ILRFMQRSSLLLRHHDETAPTRPTSPQHAT 380
>gi|330038479|ref|XP_003239608.1| TATA binding protein of transcription factor IIB-like protein
[Cryptomonas paramecium]
gi|327206532|gb|AEA38710.1| TATA binding protein of transcription factor IIB-like protein
[Cryptomonas paramecium]
Length = 467
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 13/105 (12%)
Query: 242 LTDSSARKEGF-VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNA 300
L+ KE F +++E+N+R+YAY+ + +IL F + Y LP L VG I K S++ A
Sbjct: 307 LSKKIKTKECFQMIIESNYRVYAYNNNTFLNKILIQFCDLIYNLPGLFVGEINKTSIHKA 366
Query: 301 FENGITAEQIISFLQQNAHPRVADRIPSVPENVC----DQIRLWE 341
GI A+ IISF+ +N+H + +N C +QIR+WE
Sbjct: 367 IHKGINAKNIISFILKNSH--------YIHQNSCNPIINQIRIWE 403
>gi|269860316|ref|XP_002649880.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|220066720|gb|EED44193.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 369
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 82/158 (51%), Gaps = 16/158 (10%)
Query: 242 LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 301
L ++ + F+ +ETNF++Y+Y+ + IL LFS I +++P +I + ++ + N
Sbjct: 224 LYKNNTEIQKFIYLETNFKLYSYTNNLCDRAILDLFSNIVFEVPGMIKSILDEKKIMNTL 283
Query: 302 ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQ----IRLWESDLNRVEMTPAHYYEE 357
+ GI +QI+ +++++ N CDQ I +W+ NR+ + Y +
Sbjct: 284 DRGIKIQQIVEYIRRHT------------INNCDQILHMIEIWDKQRNRINKQIGYLYSD 331
Query: 358 FPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHM 395
F + + + + + + + LL+++ ++ L V ++H+
Sbjct: 332 FTNYNEYRSVLEQIKTDTDLLYKNEEERILFVKNKLHI 369
>gi|269861689|ref|XP_002650538.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|220065990|gb|EED43520.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 291
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 82/158 (51%), Gaps = 16/158 (10%)
Query: 242 LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 301
L ++ + F+ +ETNF++Y+Y+ + IL LFS I +++P +I + ++ + N
Sbjct: 146 LYKNNTEIQKFIYLETNFKLYSYTNNLCDRAILDLFSNIVFEVPGMIKSILDEKKIMNTL 205
Query: 302 ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQ----IRLWESDLNRVEMTPAHYYEE 357
+ GI +QI+ +++++ N CDQ I +W+ NR+ + Y +
Sbjct: 206 DRGIKIQQIVEYIRRHT------------INNCDQILHMIEIWDKQRNRINKQIGYLYSD 253
Query: 358 FPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHM 395
F + + + + + + + LL+++ ++ L V ++H+
Sbjct: 254 FTNYNEYRSVLEQIKTDTDLLYKNEEERILFVKNKLHI 291
>gi|207340600|gb|EDZ68899.1| YPL122Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 226
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
N+LY +P C AI R LPPLAK ++ M++ + +P +++WV +G + + AI +
Sbjct: 23 NRLYTSPATCLAIYRILPPLAKFFIMAMVFNENEVPLLDLDKWVNSNGKLQFQNAIKSMK 82
Query: 84 QLRLFSEEKKKET-TYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAI 142
L L K T LN TF+ +L+ L G + + + +L+ L+ Y+
Sbjct: 83 SLHLLIPNKSSGTLMINLNPTFKISLRNALTGGEV--QNSFGVVVEENVVSLDLLDEYSA 140
Query: 143 GQWECFLLQLISSAQAERPT 162
+WE L ++ + A+ P+
Sbjct: 141 NKWETILHFMVGTPLAKIPS 160
>gi|302831321|ref|XP_002947226.1| hypothetical protein VOLCADRAFT_87373 [Volvox carteri f.
nagariensis]
gi|300267633|gb|EFJ51816.1| hypothetical protein VOLCADRAFT_87373 [Volvox carteri f.
nagariensis]
Length = 191
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 32/181 (17%)
Query: 10 NFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLP 69
+F +A+L+A LY +P+ A+ R+LPPLA+ YV ++L++ PA ++ W L
Sbjct: 2 DFTAYIANLSADKRTLLYRSPWTSLAVFRNLPPLAQVYVMRLLFVPTPFPADYLDSWALR 61
Query: 70 DGFTKHKVAIDRLVQLRLFSEEKKKETT----------------------------YR-- 99
+ H+ A+ L L + E++ K T +R
Sbjct: 62 SATSTHQAALAALRGLDVLLEQRIKPVTTVGPHAAGFGAVAGGRAASAAAAPQQQVHRAV 121
Query: 100 --LNSTFQSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQ 157
L+ F++ LQ+ G L R +P A P+LE L +A GQWE L L+ + +
Sbjct: 122 CVLHPDFRTQLQRVACCGSQLMRGDVPPAAAASAPSLEQLGEWATGQWEALQLYLLGAGR 181
Query: 158 A 158
+
Sbjct: 182 S 182
>gi|294950275|ref|XP_002786548.1| tfiih, polypeptide, putative [Perkinsus marinus ATCC 50983]
gi|239900840|gb|EER18344.1| tfiih, polypeptide, putative [Perkinsus marinus ATCC 50983]
Length = 580
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 36/153 (23%)
Query: 236 TNLSMSLTDSSA--RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQL-------PN 286
+ + MS+ D++A K + V++NF + AY+TS L +L F +++ QL PN
Sbjct: 376 SKMMMSVDDTTAITNKSCRLFVDSNFAVTAYTTSSLDLRLLGTFVQLQRQLGDGREYDPN 435
Query: 287 ---LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR------------------ 325
++G +T+ S+ +A + G+T+E IIS+L+ + PR A
Sbjct: 436 DFGCVLGTLTQSSVQSAAQRGVTSEYIISYLKSHVDPRAAHMGSQGGRSSAATANTGAAR 495
Query: 326 ----IPSVPENVCDQIRLWESDL--NRVEMTPA 352
I +P NV QI LWE + NR+ + P
Sbjct: 496 GEKFIDGIPANVVTQITLWEREAIHNRLRIDPG 528
>gi|145509120|ref|XP_001440504.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407721|emb|CAK73107.1| unnamed protein product [Paramecium tetraurelia]
Length = 400
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 158/376 (42%), Gaps = 73/376 (19%)
Query: 33 CEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKH-KVAIDRLVQLRLFSEE 91
C + RSLPP + + +M++ + K E + + + +D +QL+L +++
Sbjct: 27 CIPVFRSLPPNLRTIIQRMVFFE---ERKVPESIIQAQNYQQSPNTILDLAIQLKLITKQ 83
Query: 92 KKKE-----TTYRLNSTFQSNLQKHL----------INGGALPREPMPSGITARLPTLED 136
++++ + Y L+S FQ++L+ + I +E + + + L D
Sbjct: 84 EERQQQAVNSYYYLDSNFQNSLRDSIEGKSKSILTKIGDCTENKELLKRECSRKWKDLFD 143
Query: 137 L-EAYAIGQWECFLLQ----LISSAQAERPTN------FSSSMMKVFQ--RGLLIQSILR 183
L C+ Q LI S ER SS+ ++ Q + + +
Sbjct: 144 LISRRDRSDLSCYRQQVRQTLIESKLLERNLGVGFSFILSSTHKQINQILKYYVTKQSSN 203
Query: 184 SLKF-LCQGILEAYNLNTL--SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM 240
++F LC +L+ + + E Q+++IKD + GL Q + F L N
Sbjct: 204 VVRFILCLSVLDPMKIYQMPNEEWQKNVIKDLQEFGLTHYQDQQMRITF----LFWNFLY 259
Query: 241 SLTDSSARKEGFVVVETNFRMYAYSTS------KLHCEILRLFSKIEYQLPNLIVGAITK 294
S + ++VE NFR+YAY S ++ C +L LFS+I+ + LI+ +++
Sbjct: 260 EPPSVSIGIQCNIIVEANFRIYAYLNSGDQQEEEILCNLLNLFSEIKKRFKILIIADLSE 319
Query: 295 ESLYNAFENGITAEQIISFLQQNAHP------------------------RV-ADRIPS- 328
S+ A + A+QII FL+ N+ RV + +P
Sbjct: 320 SSIRKAVRENLQAKQIIQFLEMNSKQLKQQAATEKQHKSNDELKKRLDFLRVFQEGVPEK 379
Query: 329 --VPENVCDQIRLWES 342
+P NV QI+ WES
Sbjct: 380 AIIPHNVVQQIQYWES 395
>gi|90076516|dbj|BAE87938.1| unnamed protein product [Macaca fascicularis]
Length = 358
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 3/159 (1%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 47 RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 106
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 107 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 166
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA 158
+ G + L+ YA +WE L ++ S A
Sbjct: 167 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSA 205
>gi|241654873|ref|XP_002411342.1| transcription factor IIH (TFIIH), putative [Ixodes scapularis]
gi|215503972|gb|EEC13466.1| transcription factor IIH (TFIIH), putative [Ixodes scapularis]
Length = 218
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 86/190 (45%), Gaps = 23/190 (12%)
Query: 2 PQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAK 61
P + + + +L+ L++LY +P C A+ R LP +++ Y+ +++++D +P
Sbjct: 6 PSSSLKCNDLHAYLKTLSPATLDQLYTHPATCLAVFRELPIISRHYIMRLMFVDQPVPQA 65
Query: 62 TMEEWVLPDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLNSTFQSNLQKHLINGGALP 119
+ W +H +++ L L ++++ + L+ F+ N+Q L+ GG
Sbjct: 66 VVSSWNEQKYVKEHLESLEALTALHIWADSSLPGGLPGWSLSGVFRKNIQIALLGGG--- 122
Query: 120 REPMPSGITARLPTLED---------LEAYAIGQWECFLLQLISSAQAERPTNFSSSMMK 170
+P A TLE L+ YA+ +WEC L ++ E S+ ++
Sbjct: 123 -QPW-----AVYSTLEKDKHGRDAQFLDRYAMERWECVLHFMVGCHTKE---GISADAVR 173
Query: 171 VFQRGLLIQS 180
+ L++S
Sbjct: 174 ILLHAGLMKS 183
>gi|355693901|gb|AER99490.1| proteinral transcription factor IIH, polypeptide 4, 52kDa [Mustela
putorius furo]
Length = 265
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 3/159 (1%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 12 RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 71
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 72 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 131
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA 158
+ G + L+ YA +WE L ++ S A
Sbjct: 132 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSA 170
>gi|149031821|gb|EDL86756.1| rCG41767 [Rattus norvegicus]
Length = 187
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 3/153 (1%)
Query: 9 KNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVL 68
+N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P + WV
Sbjct: 18 RNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVALWVK 77
Query: 69 PDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALPREPMPS 125
+ + + L LR++ + LN F+ NL+ L+ GG A +
Sbjct: 78 KEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRIALLGGGKAWSDDTSQL 137
Query: 126 GITARLPTLEDLEAYAIGQWECFLLQLISSAQA 158
G + L+ YA +WE L ++ S A
Sbjct: 138 GPDKHARDVPSLDKYAEERWEVVLHFMVGSPSA 170
>gi|340508252|gb|EGR33999.1| hypothetical protein IMG5_027880 [Ichthyophthirius multifiliis]
Length = 454
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 18/129 (13%)
Query: 208 MIKDFADLGLVK-LQQGRKESWFIPTKLATNL---SMSLTDSSARKEGFVVVETNFRMYA 263
++ D A LG++K G+++ F T L S+ + +A+ ++VETNF +YA
Sbjct: 261 ILSDLAKLGMIKEFDLGQQKKVFGITPLIWQFCYRSIDIKTINAK----IIVETNFNLYA 316
Query: 264 Y----------STSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 313
Y S SK ++L+ FSKI Y P+LIV +T+ + AF GIT++ +I F
Sbjct: 317 YLDYNPQNKTFSESKYIRDLLKKFSKIHYTFPHLIVAQLTEAKMKQAFNQGITSKLLIEF 376
Query: 314 LQQNAHPRV 322
+ + ++
Sbjct: 377 FHKTSDAKL 385
>gi|162605818|ref|XP_001713424.1| hypothetical protein GTHECHR3089 [Guillardia theta]
gi|13794356|gb|AAK39733.1|AF083031_90 hypothetical protein [Guillardia theta]
Length = 180
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 7/131 (5%)
Query: 212 FADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF-VVVETNFRMYAYSTSKLH 270
F ++GL+ L K++ I K+ + + E F +++E NFR+Y +
Sbjct: 5 FYNMGLINLTG--KKTIQISNKIINLEKNGIIIQKKKTERFKIIIEVNFRIYIFKYFDFS 62
Query: 271 CEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVP 330
+ SK Y LP VG I + F+ G+T++ I+ F+++N H ++IPS
Sbjct: 63 NSFFKFISKKIYSLPYFYVGEINENYSRRLFQLGVTSDNILKFIKKNLH-YTCNKIPSTF 121
Query: 331 ENVCDQIRLWE 341
E D++R+WE
Sbjct: 122 E---DRLRIWE 129
>gi|85857462|gb|ABC86267.1| RE43632p [Drosophila melanogaster]
Length = 280
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 19 TARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVA 78
T L KLY P IC A+ R LP +A++++ ++L++D +P + W + A
Sbjct: 50 TPESLEKLYNYPPICLAVFRELPEIARQFIIRILFVDQPVPQAVVTSWGAQRCAKEQAEA 109
Query: 79 IDRLVQLRLF--SEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGIT----ARLP 132
L L ++ + + + L+ TF+ ++++ L+ GG +P P T ++
Sbjct: 110 TSCLTALNVWRVTAIPGGLSAWELSPTFKKSVRQVLLGGG----KPWPMTNTLDKDSKPR 165
Query: 133 TLEDLEAYAIGQWECFLLQLISSA 156
+ L+ YA+ +W C L ++ +
Sbjct: 166 DIAFLDTYAMSRWRCVLHYMVGTG 189
>gi|401419872|ref|XP_003874425.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490661|emb|CBZ25923.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 559
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 49/144 (34%)
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQL-PNLIVGAITKESLYNAFENGITAEQII 311
++ ETNFR+YAY+ IL F+++E + NL +T++S A GITA Q++
Sbjct: 359 IITETNFRLYAYTDDADLLNILNQFAELEEIVNGNLHCYRVTRDSFAAAMRKGITAAQVL 418
Query: 312 SFLQQNAHPRVADR---------------------------------IPS---------- 328
FL AHP + R +P
Sbjct: 419 RFLSLRAHPSMLRRHGEREESGDTAAPSSAGGVSSSLTFSAPHRRGAVPGTCGGTTAIDA 478
Query: 329 -----VPENVCDQIRLWESDLNRV 347
VP++ CDQ+R+WES+ +RV
Sbjct: 479 VSTIVVPQSFCDQMRMWESECHRV 502
>gi|158302621|ref|XP_561433.2| Anopheles gambiae str. PEST AGAP012880-PA [Anopheles gambiae str.
PEST]
gi|157021114|gb|EAL42401.2| AGAP012880-PA [Anopheles gambiae str. PEST]
Length = 244
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 16/160 (10%)
Query: 9 KNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVL 68
K+ + + S L KLY P IC A+ R LP +A+++V ++L+++ IP + W
Sbjct: 35 KDLEEYLKSRPPEVLEKLYNYPAICLAVYRELPEIARQFVIRILFVEQPIPQAVVSSWAT 94
Query: 69 PDGFTKHKVAIDR-LVQLRLFSEEKKKE--TTYRLNSTFQSNLQKHLINGGALPREPMPS 125
+ K ++ + L +L ++ + L TF+ NL+ L+ GG P
Sbjct: 95 -QVYAKENTSVSQVLTELGVWRSAAYPGGLAAWELCPTFKKNLKIALLGGG------RPW 147
Query: 126 GITARLP------TLEDLEAYAIGQWECFLLQLISSAQAE 159
++ L ++ L+ YA+ +W C L ++ + ++
Sbjct: 148 SMSNALDPDQKSRDIDFLDTYAMSRWRCVLHYMVGAGSSK 187
>gi|146103275|ref|XP_001469523.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134073893|emb|CAM72632.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 557
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 49/144 (34%)
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQL-PNLIVGAITKESLYNAFENGITAEQII 311
++ ETNFR+YAY+ IL F+K+E + NL +T++S +A GITA Q++
Sbjct: 357 IITETNFRLYAYTDDADLLNILNQFAKLEEIVNGNLHCYRVTRDSFASAMRKGITAAQVL 416
Query: 312 SFLQQNAHPR-------------------------------------VADRIPS------ 328
FL AHP VA S
Sbjct: 417 RFLSLRAHPSMLRRHGEREENGDTTSPSSAGGASSSFTFSASPRRRAVAGTCGSTTSIDA 476
Query: 329 -----VPENVCDQIRLWESDLNRV 347
VP++ CDQ+ +WES+ RV
Sbjct: 477 VSTLVVPQSFCDQMHMWESECRRV 500
>gi|398024082|ref|XP_003865202.1| hypothetical protein, conserved [Leishmania donovani]
gi|322503439|emb|CBZ38524.1| hypothetical protein, conserved [Leishmania donovani]
Length = 557
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 49/144 (34%)
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQL-PNLIVGAITKESLYNAFENGITAEQII 311
++ ETNFR+YAY+ IL F+K+E + NL +T++S +A GITA Q++
Sbjct: 357 IITETNFRLYAYTDDADLLNILNQFAKLEEIVNGNLHCYRVTRDSFASAMRKGITAAQVL 416
Query: 312 SFLQQNAHPR-------------------------------------VADRIPS------ 328
FL AHP VA S
Sbjct: 417 RFLSLRAHPSMLRRHGEREENGDTTSPSSAGGASSSFTFSASPRRRAVAGTCGSTTSIDA 476
Query: 329 -----VPENVCDQIRLWESDLNRV 347
VP++ CDQ+ +WES+ RV
Sbjct: 477 VSTLVVPQSFCDQMHMWESECRRV 500
>gi|258577869|ref|XP_002543116.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903382|gb|EEP77783.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 311
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 14/153 (9%)
Query: 12 MDMVASLTARDLNKLYENPFICEAILRS-LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD 70
++ + SL KLY+ P AI R LP LAK +V +LY+ +PA +E WV +
Sbjct: 9 LEYLESLPGTVFLKLYQQPSTALAIFRRMLPHLAKCFVMALLYLKDPLPAAELELWVKTE 68
Query: 71 GFTKHKVAIDRLVQLRLFSEEKKKE--TTYRLNSTFQSNLQKHLING------GALPREP 122
+ A+ L +L + S + + + F S+L++ L G G + P
Sbjct: 69 SKRERDNALSILSRLHILSSTTTANHVRAFMVTNPFSSSLRQALTGGDKQQSFGVISTTP 128
Query: 123 MPSGITARLPTLEDLEAYAIGQWECFLLQLISS 155
P + T+ DL+ YA QWE L ++ +
Sbjct: 129 DPQPM-----TIADLDDYARRQWEGVLGYMVGT 156
>gi|154345556|ref|XP_001568715.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066057|emb|CAM43844.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 561
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 48/143 (33%)
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQL-PNLIVGAITKESLYNAFENGITAEQII 311
++ ETNFR+YAY+ IL F+++E + NL +T++S A GITA Q++
Sbjct: 362 IITETNFRLYAYTEDSDLLNILHQFAELEEVVNGNLHCYRVTRDSFAAAMRKGITATQVL 421
Query: 312 SFLQQNAHPRVADR------------------IPS------------------------- 328
FL AHP + R PS
Sbjct: 422 RFLSLRAHPSMLRRYGEKEENGDTKSPSPAGGAPSSTFSAPPRRAAVAGTRGSTTFIDAV 481
Query: 329 ----VPENVCDQIRLWESDLNRV 347
VP + CDQ+R+WE + RV
Sbjct: 482 TTLVVPHSFCDQLRMWERECRRV 504
>gi|340057132|emb|CCC51474.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 502
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 34/130 (26%)
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG-AITKESLYNAFENGITAE 308
E ++ ETNFR+YAY+ +K IL F+ E ++ +IV +T+ S A GI A+
Sbjct: 315 EDTIITETNFRLYAYTRNKHLLAILEQFAIKEAEVDGMIVCFRVTRASFAAALRKGIGAQ 374
Query: 309 QIISFLQQNAH-----------PR--------------------VADRIPSVPENVCDQI 337
I+ FL+ AH PR AD+I +P + CDQ+
Sbjct: 375 HIVQFLRVKAHSSMLKHQLTCDPRDSAGLAATSSRVTPTDTPWTHADKI--IPRSFCDQL 432
Query: 338 RLWESDLNRV 347
WE + R+
Sbjct: 433 FTWERECRRL 442
>gi|342184190|emb|CCC93671.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 499
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 29/127 (22%)
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG-AITKESLYNAFENGITAE 308
E ++ ETNFR+YAY+ + IL F+ E + +IV +T+ S A GI A+
Sbjct: 314 EDTIITETNFRLYAYTRNPDLLGILDQFAVKEIDIDGIIVCYRVTRSSFALALRKGIDAK 373
Query: 309 QIISFLQQNAHPR-----------VADRI----------PS-------VPENVCDQIRLW 340
I+ FL AHP V+D + PS +P++ CDQ+ W
Sbjct: 374 HILQFLTLKAHPSMVRKDGGASRDVSDNLALNSVAGFGKPSEVHQSTVIPQSFCDQLMTW 433
Query: 341 ESDLNRV 347
E + R+
Sbjct: 434 ERECRRL 440
>gi|157876614|ref|XP_001686652.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68129727|emb|CAJ09033.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 626
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 49/144 (34%)
Query: 253 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQL-PNLIVGAITKESLYNAFENGITAEQII 311
++ ETNFR++AY+ IL F+++E + NL +T+ S A GITA Q++
Sbjct: 426 IITETNFRLFAYTNDADLLNILNQFAELEEIVNGNLHCYRVTRASFAAAMRKGITAAQVL 485
Query: 312 SFLQQNAHPR-------------------------------------VADRIPS------ 328
FL AHP VA S
Sbjct: 486 RFLSLRAHPSMLRRHGEREENGDTASPSSAGGASSSFTFSASPRRGAVAGTCGSTTSIDA 545
Query: 329 -----VPENVCDQIRLWESDLNRV 347
VP++ CDQ+R+WES+ RV
Sbjct: 546 VSTLVVPQSFCDQMRMWESECRRV 569
>gi|71747422|ref|XP_822766.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832434|gb|EAN77938.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 500
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 29/127 (22%)
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG-AITKESLYNAFENGITAE 308
E ++ ETNFR+YAY+ + IL F+ E + ++V +T+ S +A GI A
Sbjct: 315 EDTIITETNFRLYAYTKNPDMLRILDQFAVKEVDVVGMVVCYRVTRASFASALAKGIGAN 374
Query: 309 QIISFLQQNAHPRVADR------------IPS----------------VPENVCDQIRLW 340
I+ FL AHP + + +P+ +P++ CDQ+ W
Sbjct: 375 HILQFLTVKAHPSMIKQSNSEAGDPSCPVLPAASVGFGNTSEYRQGNIIPQSFCDQLFTW 434
Query: 341 ESDLNRV 347
E + R+
Sbjct: 435 ERECRRL 441
>gi|261332554|emb|CBH15549.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 500
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 29/127 (22%)
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG-AITKESLYNAFENGITAE 308
E ++ ETNFR+YAY+ + IL F+ E + ++V +T+ S +A GI A
Sbjct: 315 EDTIITETNFRLYAYTKNPDMLRILDQFAVKEVDVVGMVVCYRVTRASFASALAKGIGAN 374
Query: 309 QIISFLQQNAHPRVADR------------IPS----------------VPENVCDQIRLW 340
I+ FL AHP + + +P+ +P++ CDQ+ W
Sbjct: 375 HILQFLTVKAHPSMIKQSNSEAGDPSCPVLPAASAGFGNTSEYRQGNIIPQSFCDQLFTW 434
Query: 341 ESDLNRV 347
E + R+
Sbjct: 435 ERECRRL 441
>gi|443919931|gb|ELU39967.1| Tfb2 domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 302
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 109/269 (40%), Gaps = 66/269 (24%)
Query: 23 LNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRL 82
LN+LY P C A+ R L L ++ V +L+ D +P + + W P+ +
Sbjct: 33 LNRLYSKPSACLAVFRLLRQLDRQLVLNLLWCDSGVPLQGLMGWAKPEAISSQHSP---- 88
Query: 83 VQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPRE---PMPSGITARLPTLEDLEA 139
L + K++ R++ S++ + + + G R P+PS ++++ ++E L+
Sbjct: 89 ---SLGIQPAKRDAHDRVSRRATSSVTRRVCDSGEH-RSFGLPVPSRGSSQM-SIEQLDR 143
Query: 140 YAIGQWECFLLQLI-SSAQAERPTNFSSSMMKV-------------------FQRGLLIQ 179
A+ WE L ++ +++ A+RP + ++ FQ L+Q
Sbjct: 144 KALEHWETILHYMVDTNSSAQRPGGGALHLLVAGGWLEEGRGGGGHEITSTGFQ--FLLQ 201
Query: 180 S----------------------ILRSLKFL----CQGILEAYNLNTLSEIQRSMIKDFA 213
S I L FL + + Y+ + LS Q +M+ D
Sbjct: 202 SPRAQLWDILLQYLHMSDARRMDIAEVLSFLFMLSLMKLGQEYSCDNLSPTQNAMMTDLK 261
Query: 214 DLGLVKLQQGRKESWFIPTKLATNLSMSL 242
D G+ F PT+LAT L+ SL
Sbjct: 262 DYGI------NANKSFYPTRLATTLTSSL 284
>gi|324515605|gb|ADY46257.1| General transcription factor IIH subunit 4 [Ascaris suum]
Length = 245
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 202 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE-----GFVVVE 256
SE + + +LGLV +++ RK+ +F T L +L++S + +A E G+++VE
Sbjct: 158 SETITNFLMQLRELGLVFIRK-RKDGYFFITPLFAHLTVSSSSETAVAEKRTHSGYIIVE 216
Query: 257 TNFRMYAYSTSKLHCEILRLFSKIEYQ 283
TN+R+YAY+ S L IL F+++ Y+
Sbjct: 217 TNYRVYAYTDSSLQLAILSTFTEMLYR 243
>gi|380492949|emb|CCF34234.1| RNA polymerase II transcription factor B subunit 2 [Colletotrichum
higginsianum]
Length = 343
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 19/155 (12%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRSL-PPLAKKYVFQMLYIDGAIPAKTMEEWVLPDG 71
D + L KLY P AI R + PPLAK V +LY+ + + ++ WV P+
Sbjct: 13 DYLEKLPGTTFRKLYLQPSTAFAIFRRMIPPLAKTIVMAILYMPKPMLLEDLDVWVKPES 72
Query: 72 FTKHKVAIDRL-----VQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGG-----ALPRE 121
+ AI L +Q+ + S+E+ +E +L + F+S+L+ L GG +P
Sbjct: 73 RRQKDQAISTLRSLHILQITVPSKERPQE--MQLTTNFKSSLRLALEGGGTHNSFGVPSS 130
Query: 122 -PMPSGITARLPTLEDLEAYAIGQWECFLLQLISS 155
P+P IT L+ YA +WE L ++++
Sbjct: 131 LPVPPEITVPF-----LDRYARRKWEDILHYIVNT 160
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 13/137 (9%)
Query: 105 QSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNF 164
+S+++ L+ G + R+ GIT T EA A W LL L ++ AE
Sbjct: 172 KSSVKNLLVAGQLVRRQGSAVGITQAGFTFLLQEANA-QVWTLLLLWLEATDHAEDAAGM 230
Query: 165 SSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGR 224
S+ M F L + R AY+ N L+E +R+M+ D GL+ + +
Sbjct: 231 ESTDMLSFLFLLASLELGR-----------AYDTNALTEARRNMLPSLLDFGLIYIPSHK 279
Query: 225 KESWFIPTKLATNLSMS 241
+ +F PT+LAT L+ S
Sbjct: 280 PQQYF-PTRLATTLTSS 295
>gi|414589532|tpg|DAA40103.1| TPA: hypothetical protein ZEAMMB73_417245 [Zea mays]
Length = 877
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 9/48 (18%)
Query: 341 ESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLV 388
++DLNRVEM P++ YE+FPS+ ARD LL +DSK+MRL+
Sbjct: 824 QTDLNRVEMIPSYLYEDFPSK---------ARDNGYLLCDDSKRMRLI 862
>gi|76156573|gb|AAX27758.2| SJCHGC02916 protein [Schistosoma japonicum]
Length = 141
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 8 AKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
+ + + + ++ A L++LY +P C + R LP LAK V ++L+I+ IP + WV
Sbjct: 6 SSSIFEYLKNVGAHMLDELYTHPPTCLVVFRELPELAKHIVMRLLFIEQPIPKSIVSGWV 65
Query: 68 LPDGFTKHKVAIDRLVQLRLF--SEEKKKETTYRLNSTFQSNLQKHLINGG 116
+ L LR++ ++ ++ LN +Q +++ L GG
Sbjct: 66 EKGSSALLNDSCSALTVLRIWHSTDTNVSGGSWSLNKKYQESIRISLFGGG 116
>gi|148691278|gb|EDL23225.1| general transcription factor II H, polypeptide 4 [Mus musculus]
Length = 116
Score = 48.9 bits (115), Expect = 0.005, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 9 KNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWV 67
+N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P + WV
Sbjct: 18 RNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVALWV 76
>gi|407397449|gb|EKF27748.1| DNA repair and transcription factor protein [Trypanosoma cruzi
marinkellei]
Length = 501
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 30/128 (23%)
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG-AITKESLYNAFENGITAE 308
E ++ E NFR+YAY+ + IL F++ + ++ +I +T+++ A + GI +
Sbjct: 315 EDTIITEANFRLYAYTKNPDLLNILNQFAERDAEIDQMIACYRVTRKTFAAALKRGIGSS 374
Query: 309 QIISFLQQNAHP------RVAD----------------------RIPS-VPENVCDQIRL 339
I+ FL AHP R D RI +P++ CDQ+
Sbjct: 375 HILQFLAVKAHPSMLRNHRDGDSKKTSGLSVLGAGTRFKNTSDIRIDGIIPQSFCDQLMT 434
Query: 340 WESDLNRV 347
WE + R+
Sbjct: 435 WEKECRRL 442
>gi|430811942|emb|CCJ30591.1| unnamed protein product [Pneumocystis jirovecii]
Length = 110
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 25 KLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQ 84
+LY+NP C ++ R LP LAK+++F +LY P + V + K A+DRL +
Sbjct: 22 RLYKNPSTCLSVFRLLPSLAKQFIFSLLYYPDPFPLDDFDLLV-KENTRKQAQALDRLCR 80
Query: 85 LRLFSEEKKKETTYRLNSTFQSNLQKHLING 115
+ +F EKK + Y F++ L+ G
Sbjct: 81 IHIF--EKKNDHIY-FTENFKNEFLVALMGG 108
>gi|146161819|ref|XP_001033510.2| hypothetical protein TTHERM_00313290 [Tetrahymena thermophila]
gi|146142827|gb|EAR85847.2| hypothetical protein TTHERM_00313290 [Tetrahymena thermophila
SB210]
Length = 484
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 56/144 (38%), Gaps = 51/144 (35%)
Query: 253 VVVETNFRMYAY-------------STSKLHCE----ILRLFSKIEYQLPNLIVGAITKE 295
+ +ETNF +YAY T K E +L F + Y+ P+LIVG ++++
Sbjct: 322 ITIETNFNVYAYIDQEDPKEIKDSKDTLKDQTEHIEKLLASFCDLHYKFPHLIVGQLSEQ 381
Query: 296 SLYNAFENGITAEQIISFLQQNAHP----------------------------------R 321
+ F+NG+TA +I F + + P +
Sbjct: 382 KTKDQFKNGLTARLLIQFFNKTSDPQMKKYLKDKQMNAILLTQVQNLQKKKLEFLNLFKK 441
Query: 322 VADRIPSVPENVCDQIRLWESDLN 345
D +P+N+ +I WE + N
Sbjct: 442 TEDNFSLIPDNIQQEIETWEREKN 465
>gi|71425201|ref|XP_813043.1| DNA repair and transcription factor protein [Trypanosoma cruzi
strain CL Brener]
gi|70877891|gb|EAN91192.1| DNA repair and transcription factor protein, putative [Trypanosoma
cruzi]
Length = 501
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 30/128 (23%)
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG-AITKESLYNAFENGITAE 308
E ++ E NFR+YAY+ + IL F++ + ++ +I +T+ + A + GI +
Sbjct: 315 EDTIITEANFRLYAYTRNPDLLNILNQFAERDAEVDQMIACYRVTRRTFAAALKRGIGSS 374
Query: 309 QIISFLQQNAHP------RVAD----------------------RIPS-VPENVCDQIRL 339
I+ FL AHP R D RI +P++ CDQ+
Sbjct: 375 HILQFLAVKAHPSMLRHHREGDSKKASGLSVLGAGTRFKNASDIRIDEIIPQSFCDQLMT 434
Query: 340 WESDLNRV 347
WE + R+
Sbjct: 435 WEKECRRL 442
>gi|71650598|ref|XP_813994.1| DNA repair and transcription factor protein [Trypanosoma cruzi
strain CL Brener]
gi|70878928|gb|EAN92143.1| DNA repair and transcription factor protein, putative [Trypanosoma
cruzi]
Length = 501
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 30/128 (23%)
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG-AITKESLYNAFENGITAE 308
E ++ E NFR+YAY+ + IL F++ + ++ +I +T+ + A + GI +
Sbjct: 315 EDTIITEANFRLYAYTKNPDLLNILNQFAERDAEVDQMIACYRVTRRTFAAALKRGIGSS 374
Query: 309 QIISFLQQNAHP------RVAD----------------------RIPS-VPENVCDQIRL 339
I+ FL AHP R D RI +P++ CDQ+
Sbjct: 375 HILQFLAVKAHPSMLMHHREGDSKKASGLSVLGAGTRFKNASDIRIDEIIPQSFCDQLMT 434
Query: 340 WESDLNRV 347
WE + R+
Sbjct: 435 WEKECRRL 442
>gi|430812023|emb|CCJ30550.1| unnamed protein product [Pneumocystis jirovecii]
Length = 88
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 25 KLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQ 84
+LY+NP C ++ R LP LAK+++F +LY P + V + K A+DRL +
Sbjct: 22 RLYKNPSTCLSVFRLLPSLAKQFIFSLLYYPDPFPLDDFDLLV-KENTRKQAQALDRLCR 80
Query: 85 LRLFSEEK 92
+ +F ++K
Sbjct: 81 IHIFEKKK 88
>gi|337743331|gb|AEI73162.1| GTF2H4 [Kryptolebias marmoratus]
Length = 82
Score = 47.0 bits (110), Expect = 0.019, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 196 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT-----------D 244
Y++ +SE + ++ + GLV Q+ RK + PT+LA L+ +T
Sbjct: 3 YSVEGMSESLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAITLAAGVTSNSSSSSNLSST 61
Query: 245 SSARKEGFVVVETNFRMYAYS 265
A GF+VVETN+R+YAY+
Sbjct: 62 QGAGDAGFIVVETNYRVYAYT 82
>gi|407835017|gb|EKF99108.1| DNA repair and transcription factor protein, putative [Trypanosoma
cruzi]
Length = 501
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 30/128 (23%)
Query: 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG-AITKESLYNAFENGITAE 308
E ++ E NFR+YAY+ + IL F++ + ++ +I +T+ + A + GI +
Sbjct: 315 EDTIITEANFRLYAYTRNPDLLNILNQFAERDAEVDQMIACYRVTRRTFAAALKRGIGSL 374
Query: 309 QIISFLQQNAHP------RVAD----------------------RIPS-VPENVCDQIRL 339
I+ FL AHP R D RI +P++ CDQ+
Sbjct: 375 HILQFLAVKAHPSMLRHHREGDSKKASGLSVLGAGTRFKKASDIRIDEIIPQSFCDQLMT 434
Query: 340 WESDLNRV 347
WE + R+
Sbjct: 435 WEKECRRL 442
>gi|218184994|gb|EEC67421.1| hypothetical protein OsI_34611 [Oryza sativa Indica Group]
Length = 199
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 42 PLAKKYVFQMLYIDG--AIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLF 88
PLAKKY ++L+ ++ A M+E VL + TKH+++IDR +QL++F
Sbjct: 144 PLAKKYTLELLFASSPPSVTAAAMKECVLDEYSTKHRISIDRFLQLKIF 192
>gi|222613247|gb|EEE51379.1| hypothetical protein OsJ_32426 [Oryza sativa Japonica Group]
Length = 199
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 42 PLAKKYVFQMLYIDG--AIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLF 88
PLAKKY ++L+ ++ A M+E VL + TKH+++IDR +QL++F
Sbjct: 144 PLAKKYTLELLFASSPPSVTAAAMKECVLDEYSTKHRISIDRFLQLKIF 192
>gi|241725008|ref|XP_002412209.1| transcription factor IIH (TFIIH), putative [Ixodes scapularis]
gi|215505416|gb|EEC14910.1| transcription factor IIH (TFIIH), putative [Ixodes scapularis]
Length = 75
Score = 45.4 bits (106), Expect = 0.054, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 335 DQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIH 394
DQ+RLWE + +R Y +F S+ F+ +YA D L+W++ K +VVN H
Sbjct: 2 DQLRLWELERDRFNFREGVLYSQFISQSDFQLLRNYASDLGVLIWDNPSKRVMVVNRNGH 61
Query: 395 MHMREFLR 402
++ F +
Sbjct: 62 DEVKRFWK 69
>gi|14165325|gb|AAK55457.1|AC069300_12 hypothetical protein [Oryza sativa Japonica Group]
gi|31433471|gb|AAP54976.1| expressed protein [Oryza sativa Japonica Group]
Length = 280
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 42 PLAKKYVFQMLYIDG--AIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLF 88
PLAKKY ++L+ ++ A M+E VL + TKH+++IDR +QL++F
Sbjct: 167 PLAKKYTLELLFASSPPSVTAAAMKECVLDEYSTKHRISIDRFLQLKIF 215
>gi|197107449|pdb|3DOM|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
gi|197107451|pdb|3DOM|C Chain C, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
Length = 108
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 320 PRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLW 379
P + + +P V DQIRLW+ +L+RV Y +F + + YA+D LLW
Sbjct: 19 PNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLW 78
Query: 380 EDSKKMRLVVNAEIHMHMREFLR 402
+D KK + ++ E + + +F +
Sbjct: 79 KDDKKKKFFISKEGNSQVLDFAK 101
>gi|47194594|emb|CAF93785.1| unnamed protein product [Tetraodon nigroviridis]
Length = 123
Score = 42.0 bits (97), Expect = 0.53, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 23/110 (20%)
Query: 318 AHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA------ 371
+ P + P +P + DQIRLWE + +R++ T Y +F S+ FE D A
Sbjct: 13 SSPTPLTQTPVLPPTITDQIRLWELERDRLQFTEGVLYNQFLSQTDFEVLRDRAQVGLFH 72
Query: 372 -----------------RDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 404
+ LLW+D+ +VV H +++F + Q
Sbjct: 73 CCYTIRQKVHQQLSPVLQSLGCLLWQDAAHRVMVVTLWGHSEVKKFWKRQ 122
>gi|55296646|dbj|BAD69366.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 110
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 41 PPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLF 88
PPLAK + + + A M+E VL + TKH+++IDR +QLR+F
Sbjct: 48 PPLAKYTLELCVSTPPPVAAAAMKECVLDEYATKHRISIDRFLQLRIF 95
>gi|197107383|pdb|3DGP|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
Length = 80
Score = 39.3 bits (90), Expect = 3.9, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 333 VCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAE 392
V DQIRLW+ +L+RV Y +F + + YA+D LLW+D KK + ++ E
Sbjct: 4 VVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKE 63
Query: 393 IHMHMREFLRGQNK 406
+ + +F + + K
Sbjct: 64 GNSQVLDFAKRKLK 77
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,887,840,001
Number of Sequences: 23463169
Number of extensions: 232500319
Number of successful extensions: 523599
Number of sequences better than 100.0: 419
Number of HSP's better than 100.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 522153
Number of HSP's gapped (non-prelim): 844
length of query: 406
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 261
effective length of database: 8,957,035,862
effective search space: 2337786359982
effective search space used: 2337786359982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 78 (34.7 bits)