BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015440
(406 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P60027|TF2H4_PANTR General transcription factor IIH subunit 4 OS=Pan troglodytes
GN=GTF2H4 PE=3 SV=1
Length = 462
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 130/450 (28%), Positives = 219/450 (48%), Gaps = 48/450 (10%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 11 RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 70
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 71 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 130
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA--------------------- 158
+ G + L+ YA +WE L ++ S A
Sbjct: 131 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEP 190
Query: 159 ----------------ERPTNFSSSMMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYN 197
+ P M++ Q RG+ + IL L L L + Y+
Sbjct: 191 GEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYS 250
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVV 255
+ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VV
Sbjct: 251 VEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVV 309
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 310 ETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLR 369
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
AHP + + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+
Sbjct: 370 TRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELG 429
Query: 376 GLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
L++E+S K +VV H ++ F + Q
Sbjct: 430 VLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459
>sp|Q92759|TF2H4_HUMAN General transcription factor IIH subunit 4 OS=Homo sapiens
GN=GTF2H4 PE=2 SV=1
Length = 462
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 130/450 (28%), Positives = 219/450 (48%), Gaps = 48/450 (10%)
Query: 3 QVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKT 62
+V + +N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P
Sbjct: 11 RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 70
Query: 63 MEEWVLPDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALP 119
+ WV + + + L LR++ + LN F+ NL+ L+ GG A
Sbjct: 71 VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 130
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQA--------------------- 158
+ G + L+ YA +WE L ++ S A
Sbjct: 131 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEP 190
Query: 159 ----------------ERPTNFSSSMMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYN 197
+ P M++ Q RG+ + IL L L L + Y+
Sbjct: 191 GEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYS 250
Query: 198 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVV 255
+ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VV
Sbjct: 251 VEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVV 309
Query: 256 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 315
ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 310 ETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLR 369
Query: 316 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 375
AHP + + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+
Sbjct: 370 TRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELG 429
Query: 376 GLLWEDSKKMRLVVNAEIHMHMREFLRGQN 405
L++E+S K +VV H ++ F + Q
Sbjct: 430 VLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459
>sp|Q54C29|TF2H4_DICDI General transcription factor IIH subunit 4 OS=Dictyostelium
discoideum GN=gtf2h4 PE=3 SV=1
Length = 483
Score = 187 bits (476), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 140/485 (28%), Positives = 232/485 (47%), Gaps = 112/485 (23%)
Query: 15 VASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTK 74
+ASL ++DL +LY++P+ C+AILRSLPP +K+Y+ +ML +D P ++W +
Sbjct: 10 LASLDSKDLEELYKDPWTCQAILRSLPPRSKQYILKMLLVD-TYPLSLAKDWSTQASIQQ 68
Query: 75 HKVAIDRLVQLRLFSEEK-----------------------------KKETTYRLNSTFQ 105
HK ++ +L L++ +K + E T RLN FQ
Sbjct: 69 HKESLKKLFDLKIIFLDKINKPIQPQQQQSSQQSSSQQQQQQQQQQQQTEQTIRLNPLFQ 128
Query: 106 SNLQKHLI--------NGGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQ 157
N+++ L+ N ++ P P+++DL++Y+ QWE L L S
Sbjct: 129 DNIKRSLVQVNQVIFSNNSSIKDNHKP-------PSIDDLDSYSKSQWEKVLYFL--SDD 179
Query: 158 AERPTNF------SSSMMKVFQRGLLIQSILRSLKFLCQGIL------------------ 193
+P+ SS++ K GL I S KFL + +
Sbjct: 180 TVQPSKLISELLLSSNLTKQEGDGLSITS--EGFKFLLKDVYTQIWTLLIVYLDDLEKKK 237
Query: 194 -----------------------EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKES--W 228
Y ++ LSE Q+ + GL+ + R +S
Sbjct: 238 GKGSGSRNDLLSFLFRLSFLNLGRGYLVSELSEQQKEYLFALKQFGLIYM---RTDSSIL 294
Query: 229 FIPTKLATNLS----MSLTDS-------SARKEGFVVVETNFRMYAYSTSKLHCEILRLF 277
F PT+L +L+ +SL S + +++G++V+ETN+R+YAY++S L +L LF
Sbjct: 295 FYPTRLIISLTTGKTLSLIQSISSERTQTQKEQGYIVLETNYRLYAYTSSSLQISLLSLF 354
Query: 278 SKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQI 337
K+ Y+LPNL VG IT+ES+ A +GITA+QII F++ N+HP A+ +P+ V +QI
Sbjct: 355 VKMLYRLPNLAVGIITRESIRTALIHGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQI 414
Query: 338 RLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHM 397
LWE++ NR+ T + Y FP+ D + A +A+++ +W LVV E + +
Sbjct: 415 LLWEAERNRITYTKSVLYNSFPTNDCYIATLKFAKEQDYYIWSHDPLKTLVVKEEGNDPI 474
Query: 398 REFLR 402
R F++
Sbjct: 475 RNFIK 479
>sp|O70422|TF2H4_MOUSE General transcription factor IIH subunit 4 OS=Mus musculus
GN=Gtf2h4 PE=2 SV=1
Length = 463
Score = 187 bits (476), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 129/444 (29%), Positives = 216/444 (48%), Gaps = 48/444 (10%)
Query: 9 KNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVL 68
+N + + L+ L++LY +P C A+ R LP LAK +V +ML+++ +P + WV
Sbjct: 18 RNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVALWVK 77
Query: 69 PDGFTKHKVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLQKHLINGG-ALPREPMPS 125
+ + + L LR++ + LN F+ NL+ L+ GG A +
Sbjct: 78 KEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRIALLGGGKAWSDDTSQL 137
Query: 126 GITARLPTLEDLEAYAIGQWECFLLQLISSAQA--------------------------- 158
G + L+ YA +WE L ++ S A
Sbjct: 138 GPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEPGEPPCI 197
Query: 159 ----------ERPTNFSSSMMKVFQ----RGLLIQSILRSLKFLCQGIL-EAYNLNTLSE 203
+ P M++ Q RG+ + IL L L L + Y++ +S+
Sbjct: 198 TSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSD 257
Query: 204 IQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRM 261
+ ++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VVETN+R+
Sbjct: 258 SLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRL 316
Query: 262 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR 321
YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP
Sbjct: 317 YAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPV 376
Query: 322 VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWED 381
+ + P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+
Sbjct: 377 MLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFEN 436
Query: 382 SKKMRLVVNAEIHMHMREFLRGQN 405
S K +VV H ++ F + Q
Sbjct: 437 SAKRLMVVTPAGHSDVKRFWKRQK 460
>sp|P87303|TFB2_SCHPO RNA polymerase II transcription factor B subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb2 PE=1 SV=2
Length = 447
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/429 (28%), Positives = 208/429 (48%), Gaps = 58/429 (13%)
Query: 25 KLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQ 84
+LY+ P C A+ R LP LA++YV ML+ + + W+ + ++LV+
Sbjct: 21 RLYQKPAACLAVFRLLPILARQYVMSMLFNPMPVALSDFDLWIKLSSKVYQSESFNKLVR 80
Query: 85 LRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMP-SGITARLPTLEDLEAYAIG 143
+ +F + + T LNS F+ L GG +P + L T++ L+AYA
Sbjct: 81 MHIFQFDGQYIT---LNSEFRKQFITALTGGGNHNSFGVPCTDEDKHLVTVDFLDAYAKE 137
Query: 144 QWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQS------ILRS-LKFLCQGI---- 192
WE L ++ + +A+ P ++ + +RG L+ I R+ +FL Q I
Sbjct: 138 TWETILHFMVGTPEAKFP---GEGVLSLLKRGGLMSGPKNQLRITRAGFQFLLQDINAQI 194
Query: 193 ---------------------------------LEAYNLNTLSEIQRSMIKDFADLGLVK 219
AY+++ L++ Q+ M++D + GLV
Sbjct: 195 WTLLLDYLKLSEDTHMDPVQVLHFLFMLGSLDLGRAYSVDFLTDTQQIMLEDLREYGLV- 253
Query: 220 LQQGRKESWFIPTKLATNLSMSLTDSSARK------EGFVVVETNFRMYAYSTSKLHCEI 273
Q+ F PT+LAT L+ ++ +GF++VETN+R+YAY++S L I
Sbjct: 254 YQRKITSKRFYPTRLATGLTTDYRSLHGKQSENDDDKGFIIVETNYRLYAYTSSPLQIAI 313
Query: 274 LRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENV 333
+ LF+ + + NL+VG IT++S+ A NGI AEQII++L +AHP++ +P +P +
Sbjct: 314 IGLFANLRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLTTHAHPQMRSNVPLLPPTL 373
Query: 334 CDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEI 393
DQI LWE + NR+ TP + +F + F+ A +YA++ L+W+ S K +
Sbjct: 374 VDQIYLWELEKNRLRATPGILFRDFLTDSGFDQAVEYAKELGVLVWDSSLKRMFFITTTG 433
Query: 394 HMHMREFLR 402
M +L+
Sbjct: 434 AQPMIAYLK 442
>sp|Q6CLR2|TFB2_KLULA RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=TFB2 PE=3 SV=1
Length = 496
Score = 179 bits (454), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 131/485 (27%), Positives = 218/485 (44%), Gaps = 100/485 (20%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGF 72
D + L + ++LYE+P C AI R L P+AK ++ ML+ D + + +++WV PD
Sbjct: 12 DYLEGLPEQVQSRLYESPATCLAIYRLLSPMAKFFIMSMLFQDHDVSLRDLDKWVKPDAK 71
Query: 73 TKHKVAIDRLVQLRLFSE-EKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARL 131
+ + +I + L L E E K+ RLN F+ + K+++ GG +
Sbjct: 72 YQLQYSIKSMKSLNLIIEGESKQPLLIRLNPIFKKSF-KNVLTGGEINNSFGDVADDDTN 130
Query: 132 P-TLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQR-GLLIQSILRSLKFLC 189
P + L+ Y+ +WE L ++ + P ++ + Q GL+ ++ LK
Sbjct: 131 PVSTATLDQYSAEKWETILHYMVGTPNTNTP---GGKVLDLLQHSGLMEEAEYGELKITN 187
Query: 190 QG--------------------------------------------ILEAYNLNTLSEIQ 205
QG + +AY + LS Q
Sbjct: 188 QGFQFLLQDVNAQMWTLLLQYLKMAESLQMDPVDVLNFIFMLGALQLGKAYKCDQLSNTQ 247
Query: 206 RSMIKDFADLGLVKLQQGRKESWFIPTKLAT-----------------------NLSMSL 242
R+M++D D GL+ Q + F PT+LAT N + ++
Sbjct: 248 RTMLQDMRDYGLI-YQNQSDYAKFYPTRLATLLTSDTKAFRSASVALDSVLNKANETTAV 306
Query: 243 TDSSARKE-------GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 295
S + E G +++ETNF++Y+YS S L IL LF ++ + N++ G +T+E
Sbjct: 307 EGDSGQDETTERTQDGALIIETNFKLYSYSNSPLQIAILSLFVHLKSRFANMVTGQLTRE 366
Query: 296 SLYNAFENGITAEQIISFLQQNAHPR------------------VADRIPSVPENVCDQI 337
S+ NA NGITAEQII++L+ +AHPR V + + +P V DQI
Sbjct: 367 SVRNALLNGITAEQIIAYLETHAHPRMRRLAEENLSKKLELDPTVKETLQVLPPTVVDQI 426
Query: 338 RLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHM 397
RLW+ +L+R+ + Y +F S ++ DYA+D LLW++ KK V+ E + +
Sbjct: 427 RLWQLELDRIISYDGYLYTDFESYQEYQTVADYAKDIGVLLWQNEKKKMFFVSTEGNSQV 486
Query: 398 REFLR 402
+F R
Sbjct: 487 LDFHR 491
>sp|Q6BZX4|TFB2_YARLI RNA polymerase II transcription factor B subunit 2 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB2 PE=3 SV=1
Length = 467
Score = 178 bits (452), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 124/456 (27%), Positives = 216/456 (47%), Gaps = 68/456 (14%)
Query: 13 DMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGF 72
D + L L +LY++P C A+ R LP LA+ + M++ I ++ V P
Sbjct: 11 DYLEGLPEAVLTRLYQSPATCLAVFRLLPALARTLIMGMIFNPDPIAVADVDALVKP--- 67
Query: 73 TKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITARLP 132
+ ++ ++ +LRL + + +N TF+ NL+ L+ G +P +
Sbjct: 68 SSQRLKLETQKKLRLLHIFTETQAHIIINPTFKKNLRAALVGGDQNISFGVPCDTEDKHK 127
Query: 133 T-LEDLEAYAIGQWECFLLQLISSAQAERPTNF------SSSMMKVFQRGLLIQSILRSL 185
+ L+A+A+ QWE L ++ ++ P++ S +M+ + GL I +
Sbjct: 128 VDVAFLDAHAVSQWEMILHFMVGTSIGRTPSDGVLNLLKHSGLMEPERGGLRITNA--GF 185
Query: 186 KFLCQ----------------------------------GILEA---YNLNTLSEIQRSM 208
+FL Q G LE Y+L+ LSE Q+ M
Sbjct: 186 QFLLQDVNAQIWTLLLQYLNMSEYLQMDPVDVLNFIFMLGSLELGQDYSLSALSETQKHM 245
Query: 209 IKDFADLGLVKLQQGRKESWFIPTKLATNLSM------------------SLTDSSARKE 250
++D D G+V Q+ F PT+LAT L+ +++ S A
Sbjct: 246 LEDLRDYGIV-YQRKASSRRFYPTRLATTLTSETAALRTASQSMEAATQDTISSSVAADS 304
Query: 251 GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQI 310
GF+++ETNFR+YAY+ S L +L LF ++ + N++ G I ++S+ A NGITAEQI
Sbjct: 305 GFIILETNFRLYAYTESPLQIAVLNLFVNLKTRFANMVTGQINRDSVRFALSNGITAEQI 364
Query: 311 ISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 370
I++L +AHPR+ +P V DQI+LW+ +++R+ T + + EF + D ++ Y
Sbjct: 365 ITYLSVHAHPRMKGMEHVLPPTVVDQIKLWQLEMDRIRATDGYLFSEFKNFDEYKDVSTY 424
Query: 371 ARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406
A++ LL+E+ K + V + EF++ +N+
Sbjct: 425 AKELGVLLYENPGKRKFVSTLAGSQQIVEFVKRRNQ 460
>sp|Q6BGW8|TFB2_DEBHA RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TFB2 PE=3 SV=2
Length = 515
Score = 172 bits (436), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 130/492 (26%), Positives = 215/492 (43%), Gaps = 138/492 (28%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
++LYE P C +I R LPP+AK Y+ ML+ + + K +++W P T K D L
Sbjct: 24 SRLYEAPATCLSIYRLLPPIAKFYIMTMLFYETPVALKDLDKWCKP---TSRKFQFDSLK 80
Query: 84 QLRLFS--EEKKKETTYRLNSTFQSNLQKHLING------GALPREPMPSGITARLPTLE 135
+LR EE + RL+ TF+ N + L G L P ++ +
Sbjct: 81 RLRALHLIEEDSSGSHIRLHPTFRQNFRDCLTGSQARNAFGNLSTTPDEQSVSIKF---- 136
Query: 136 DLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRS----------L 185
L+++A+ +WE L ++ + + P+N S++ + + G L++ +
Sbjct: 137 -LDSFALQKWESILHFMVGTELSVTPSN---SVLSLLKSGGLMEGTNKGGNRLNITNSGF 192
Query: 186 KFLCQ----------------------------------GILE---AYNLNTLSEIQRSM 208
+FL Q G LE Y +++LSE Q SM
Sbjct: 193 QFLLQDINAQIWTLLLQYLNLTQDLNMDPVDVLNFIFILGSLELGKGYTVSSLSETQISM 252
Query: 209 IKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK------------------- 249
+ D D GL+ Q+ F PT+LAT L+ +DS+A K
Sbjct: 253 LADLRDYGLI-YQRSENSERFYPTRLATTLT---SDSAALKSPSMAMEQALESTTETEEQ 308
Query: 250 --------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 301
+G +++ETNF++YAY+ S L IL LF ++ + N++ G IT+ES+ NA
Sbjct: 309 QNLASNSNQGTIILETNFKIYAYTNSPLEIAILNLFVHLKTRFSNMVCGQITRESIRNAL 368
Query: 302 ENGITAEQIISFLQQNAHPRVA-------------------------------------- 323
NGITA+QII FL+ +AH ++
Sbjct: 369 YNGITADQIIKFLETHAHSQMKILAKERLDKKIEFDTSNNINTAGGAPQSQMMTNENGTT 428
Query: 324 ---DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE 380
++ +P V DQI+LW+ +L+R++ + +++F S+ FEA +YA + LLW
Sbjct: 429 VAQHKLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFASQQEFEALSNYASEIGVLLWS 488
Query: 381 DSKKMRLVVNAE 392
+ KM+ V +
Sbjct: 489 NKSKMKFFVTKD 500
>sp|Q75B51|TFB2_ASHGO RNA polymerase II transcription factor B subunit 2 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TFB2 PE=3 SV=1
Length = 514
Score = 169 bits (428), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 136/488 (27%), Positives = 219/488 (44%), Gaps = 119/488 (24%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
++LY++P C AI R L P+AK ++ M++ D + + ++ WV PD + AI +
Sbjct: 32 SRLYQSPATCLAIYRLLSPMAKFFIMSMIFQDEEVSLRDLDRWVKPDAKFQLHDAIKSMK 91
Query: 84 QLRLFSEEKKKE-TTYRLNSTFQSNLQKHLING-------GALPREPMPSGITARLPTLE 135
L L +E + + +LNS F+ + + L G + E P T+
Sbjct: 92 LLHLITEGRSGQPLMVQLNSIFKESFKNALTGGEVKNSFGNVVEEENDPV-------TMA 144
Query: 136 DLEAYAIGQWECFLLQLISSAQAERP---------------TNFSSSMMKVFQRG----- 175
L++YA +WE L ++ + + P + SS +K+ G
Sbjct: 145 MLDSYAADKWETILHFMVGTPLTKSPGKNVLSLLRHSKLMEVDESSKELKITNEGFQFLL 204
Query: 176 ---------LLIQSILRSLKFLCQ-----------GILE---AYNLNTLSEIQRSMIKDF 212
LL+Q + + F G LE AY++ LSE Q++M++D
Sbjct: 205 QDANAQIWTLLLQYLTMAETFQMDPVDVLNLIFMIGALELGKAYSVVGLSETQKTMLQDL 264
Query: 213 ADLGLVKLQQGRKESWFIPTKLATNLS---MSLTDSSA--------RKEGF--------- 252
D GLV Q+ S F PT+LAT L+ +S+ +S R EG
Sbjct: 265 RDYGLV-FQKQSNLSKFYPTRLATMLTSDVVSIRSASGAVNSVLRQRAEGVDGKVLNGTA 323
Query: 253 -----------------VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 295
++VETNF++Y+YS S L IL LF ++ + N++ G IT+E
Sbjct: 324 LGDDDLQAGGEGALDGALIVETNFKLYSYSNSPLQIAILSLFIHLKTRFQNMVTGQITRE 383
Query: 296 SLYNAFENGITAEQIISFLQQNAHP---RVA---------------DRIPSVPENVCDQI 337
S+ A NGITA+QII++++ +AHP R+A D + +P V DQI
Sbjct: 384 SIRRALHNGITADQIIAYMETHAHPQMRRLAGDNLEKKLELDPNCRDTLQVLPPTVVDQI 443
Query: 338 RLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAE----- 392
+LW+ +L+R+ + + +F + ++ YARD LLW D KK V+ E
Sbjct: 444 KLWQLELDRIISYDGYLFRDFDNLQEYQVLAQYARDIGVLLWSDDKKKMFFVSKEGNAQV 503
Query: 393 IHMHMREF 400
I H R+F
Sbjct: 504 IDFHKRKF 511
>sp|Q02939|TFB2_YEAST RNA polymerase II transcription factor B subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFB2 PE=1
SV=1
Length = 513
Score = 162 bits (409), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 134/487 (27%), Positives = 219/487 (44%), Gaps = 111/487 (22%)
Query: 24 NKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLV 83
N+LY +P C AI R LPPLAK ++ M++ + +P +++WV +G + + AI +
Sbjct: 23 NRLYTSPATCLAIYRILPPLAKFFIMAMVFNENEVPLLDLDKWVNSNGKLQFQNAIKSMK 82
Query: 84 QLRLFSEEKKKET-TYRLNSTFQSNLQKHLINGGALPREPMPSGITARLPTLEDLEAYAI 142
L L K T LN TF+ +L+ L G + + + +L+ L+ Y+
Sbjct: 83 SLHLLIPNKSSGTLMINLNPTFKISLRNALTGGEV--QNSFGVVVEENVVSLDLLDEYSA 140
Query: 143 GQWECFLLQLISSAQAERPTN---------------FSSSMMKVFQRGL--LIQSI---- 181
+WE L ++ + A+ P+ S+ K+ G L+Q I
Sbjct: 141 NKWETILHFMVGTPLAKIPSEKVLNLLKHSKLMEEVNSTGEFKITNEGFQFLLQEINSQL 200
Query: 182 ----LRSLKFL---------------CQGILE---AYNLNTLSEIQRSMIKDFADLGLVK 219
L+ LK + G LE AY ++ LSE QR M++D D GLV
Sbjct: 201 WTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDALSETQRIMLQDMRDYGLV- 259
Query: 220 LQQGRKESWFIPTKLATNLSM---------SLTDSSARK--------------------- 249
Q+ +S F PTKLA L+ + DS R+
Sbjct: 260 FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMDSVLRQNREEPSVNEDGANGKSTTDIT 319
Query: 250 ----------------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 293
+G ++VETNF++Y+YS S L +L LF ++ + N+++G IT
Sbjct: 320 TSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQIT 379
Query: 294 KESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRIPSVPENVCD 335
+ES+ A NGITA+QII++L+ +AHP++ + + +P V D
Sbjct: 380 RESIRRALTNGITADQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVD 439
Query: 336 QIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHM 395
QIRLW+ +L+RV Y +F + + YA+D LLW+D KK + ++ E +
Sbjct: 440 QIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNS 499
Query: 396 HMREFLR 402
+ +F +
Sbjct: 500 QVLDFAK 506
>sp|Q6FP41|TFB2_CANGA RNA polymerase II transcription factor B subunit 2 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TFB2 PE=3 SV=1
Length = 504
Score = 162 bits (409), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 129/481 (26%), Positives = 217/481 (45%), Gaps = 111/481 (23%)
Query: 25 KLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQ 84
+LY++P C AI R LP LAK ++ +++ D I + ++ WV +G + + AI +
Sbjct: 24 RLYKSPATCLAIYRLLPTLAKFFIMTVIFNDKDISLRDLDRWVKSNGKLQFQEAIKSMKS 83
Query: 85 LRLFSEEK-KKETTYRLNSTFQSNLQKHLINGGALPREPMPSGITA---RLPTLEDL--- 137
L L + + LN TF+ + + L GG + GI RL T+ +L
Sbjct: 84 LHLLIPTRVNGQLLINLNPTFRESFRNAL-TGGEVNNS---FGIVVDEDRLDTVVNLAVL 139
Query: 138 EAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRS---------LKFL 188
+ YA +WE L ++ + A+ P S +++ + + L++ + S +FL
Sbjct: 140 DEYAATKWETILHFMVGTPMAKMP---SENVLNLLKHSKLMEEVPDSSEFMITNEGFQFL 196
Query: 189 CQ----------------------------------GILE---AYNLNTLSEIQRSMIKD 211
Q G LE AY+ LSE Q M+ D
Sbjct: 197 LQEVNSQIWSLLLQYLKLAESLHMDPVHVLNFIFMLGALETGKAYSTENLSETQLKMLLD 256
Query: 212 FADLGLVKLQQGRKESWFIPTKLATNLS----------------MSLTDSSAR------- 248
D GLV Q+ + F PT+LA L+ ++ D +A+
Sbjct: 257 MRDYGLV-FQKTSNPNIFYPTRLAQMLTSDTKSMRTASGAMESVLNKPDDAAKSTDDKYD 315
Query: 249 ---------KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 299
++G +++ETNF++Y+Y S L IL LF ++ + N++ G IT+ES+
Sbjct: 316 SLEGKAEDIQDGALIIETNFKLYSYCNSPLQIAILSLFVHLKSRFANMVAGQITRESIRR 375
Query: 300 AFENGITAEQIISFLQQNAHPRV------------------ADRIPSVPENVCDQIRLWE 341
A NGITA+Q+I++L+ +AHP++ D + +P V DQI+LW+
Sbjct: 376 ALINGITADQVIAYLESHAHPQMRRLAEEKLQKKLELDPNCKDPLQVLPPTVVDQIKLWQ 435
Query: 342 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 401
+L+RV Y +F + F C YA+D LLW+D +K +L V+ E + + E+
Sbjct: 436 LELDRVLTYEGSLYIDFDTAQDFNMLCKYAQDIGALLWKDDRKRKLFVSREGNAQVLEYA 495
Query: 402 R 402
+
Sbjct: 496 K 496
>sp|Q7VKC2|SELA_HAEDU L-seryl-tRNA(Sec) selenium transferase OS=Haemophilus ducreyi
(strain 35000HP / ATCC 700724) GN=selA PE=3 SV=1
Length = 460
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 62 TMEEWVLPDGFTKHKVAIDRLVQ----LRLFSEEKKKETTYRLNSTFQSNLQKHL--ING 115
T+ ++LPD T H + L Q LR+ + + + RL++ + +++ L I
Sbjct: 335 TLRHYLLPDQLTTHLPTLSLLTQSIDHLRVKATRLQNSLSKRLDARYHLQIEQSLAQIGS 394
Query: 116 GALPREPMPS-GITARLPTLEDL 137
GALP E + S +T PT DL
Sbjct: 395 GALPTERLASLAVTITAPTQRDL 417
>sp|P14669|ANXA3_RAT Annexin A3 OS=Rattus norvegicus GN=Anxa3 PE=1 SV=4
Length = 324
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 15/126 (11%)
Query: 136 DLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGL----------LIQSILRSL 185
DL+ G +E ++ LI++ P F + +K RG+ L R +
Sbjct: 72 DLKGDLSGHFEHVMVALITA-----PAVFDAKQLKKSMRGMGTDEDTLIEILTTRTSRQM 126
Query: 186 KFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS 245
K + Q AY N +I DF L GR ES + LA + +L D+
Sbjct: 127 KEISQAYYTAYKKNLRDDISSETSGDFRKALLTLADGGRDESLKVDEHLAKKDAQTLYDA 186
Query: 246 SARKEG 251
+K G
Sbjct: 187 GEKKWG 192
>sp|Q2JTM9|Y1810_SYNJA UPF0182 protein CYA_1810 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=CYA_1810 PE=3 SV=1
Length = 851
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 18/77 (23%)
Query: 303 NGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRD 362
N +TAE + F + PRV+ R P V + + RVE PA YY E + D
Sbjct: 426 NVVTAEGLPDFFLSDIPPRVSPRYPEV------------AQVLRVEQ-PALYYSELTTTD 472
Query: 363 VFEAA----CDY-ARDR 374
VF A DY A DR
Sbjct: 473 VFVGAEARELDYPAADR 489
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,726,574
Number of Sequences: 539616
Number of extensions: 5539330
Number of successful extensions: 13057
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 13013
Number of HSP's gapped (non-prelim): 33
length of query: 406
length of database: 191,569,459
effective HSP length: 120
effective length of query: 286
effective length of database: 126,815,539
effective search space: 36269244154
effective search space used: 36269244154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)