Query 015440
Match_columns 406
No_of_seqs 137 out of 213
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 12:40:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015440.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015440hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r1ta_ a.4.5.5 (A:) SmtB repr 86.1 1.6 0.00012 33.5 8.3 84 16-108 3-87 (98)
2 d1b0na1 a.34.1.1 (A:74-108) Si 74.3 1.3 9.1E-05 28.3 3.0 21 296-316 8-28 (35)
3 d1r1ua_ a.4.5.5 (A:) Metal-sen 63.9 13 0.00094 27.9 7.7 76 35-112 10-87 (94)
4 d1u2wa1 a.4.5.5 (A:12-119) Cad 62.2 8.8 0.00064 29.6 6.6 79 31-110 19-98 (108)
5 d1mxsa_ c.1.10.1 (A:) KDPG ald 60.4 7.9 0.00057 33.8 6.6 125 250-403 41-177 (216)
6 d1vhca_ c.1.10.1 (A:) Hypothet 59.7 9.1 0.00066 33.2 6.9 157 205-402 4-173 (212)
7 d1wbha1 c.1.10.1 (A:1-213) KDP 56.6 9.9 0.00072 33.0 6.5 125 250-403 39-175 (213)
8 d1ub9a_ a.4.5.28 (A:) Hypothet 51.2 17 0.0012 26.7 6.3 65 44-109 17-85 (100)
9 d1wa3a1 c.1.10.1 (A:2-203) KDP 45.3 28 0.002 29.6 7.6 125 250-403 33-169 (202)
10 d1jhfa1 a.4.5.2 (A:2-72) LexA 42.8 7.1 0.00051 28.0 2.7 59 143-226 5-63 (71)
11 d2p5ka1 a.4.5.3 (A:2-64) Argin 41.6 6.4 0.00046 28.1 2.2 28 202-229 34-61 (63)
12 d1stza1 a.4.5.51 (A:14-100) He 39.8 9.4 0.00069 28.6 3.1 35 202-238 39-73 (87)
13 d1kwma2 d.58.3.1 (A:1A-95A) Pr 38.1 38 0.0027 24.9 6.5 51 354-404 12-71 (95)
14 d1b4aa1 a.4.5.3 (A:4-78) Argin 35.1 10 0.00074 27.9 2.5 28 202-229 32-59 (75)
15 d1wj5a_ a.4.5.59 (A:) OB fold- 34.6 7.3 0.00054 31.2 1.7 29 204-233 79-108 (120)
16 d1aoya_ a.4.5.3 (A:) Arginine 30.3 13 0.00092 27.5 2.3 27 203-229 41-67 (78)
17 d1jqga2 d.58.3.1 (A:4P-100P) P 25.2 71 0.0052 23.0 6.0 46 359-404 15-63 (92)
18 d1p6ra_ a.4.5.39 (A:) Penicill 22.3 27 0.0019 25.4 2.9 27 203-229 42-68 (82)
19 d2v9va2 a.4.5.35 (A:438-510) C 20.7 93 0.0068 21.4 5.6 60 270-355 7-66 (73)
20 d2boaa2 d.58.3.1 (A:4-99) Proc 20.1 90 0.0066 22.5 5.7 57 348-404 3-66 (94)
No 1
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=86.09 E-value=1.6 Score=33.48 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=62.9
Q ss_pred hhcCHHHHHHhhCChhhHHHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecCCC-
Q 015440 16 ASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKK- 94 (406)
Q Consensus 16 ~~Lp~~~~~~LY~~p~tclaIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~~~- 94 (406)
..+++++++.| -.+|+.|.+=.+.-|+++| .++|....++..-+.- +.......++.|++.+|+...+.|
T Consensus 3 ~~~~pe~~~~l-------a~~~kaL~~p~Rl~Il~~L-~~~~~~v~ela~~l~i-s~stvS~HL~~L~~aglV~~~r~G~ 73 (98)
T d1r1ta_ 3 QAIAPEVAQSL-------AEFFAVLADPNRLRLLSLL-ARSELCVGDLAQAIGV-SESAVSHQLRSLRNLRLVSYRKQGR 73 (98)
T ss_dssp CCCCHHHHHHH-------HHHHHHHCCHHHHHHHHHH-TTCCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred ccCCHHHHHHH-------HHHHHHhCCHHHHHHHHHH-HcCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCceEEEEECC
Confidence 34566666544 4688888777777788888 4788999999998875 477888889999999999875434
Q ss_pred ceeEEeCHHHHHHH
Q 015440 95 ETTYRLNSTFQSNL 108 (406)
Q Consensus 95 ~~~~~Ln~~F~~~l 108 (406)
...|.||+..-..+
T Consensus 74 ~~~Y~l~~~~i~~l 87 (98)
T d1r1ta_ 74 HVYYQLQDHHIVAL 87 (98)
T ss_dssp EEEEEESSHHHHHH
T ss_pred EEEEEEChHHHHHH
Confidence 46788987654443
No 2
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=74.27 E-value=1.3 Score=28.28 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=18.9
Q ss_pred HHHHHHHcCCCHHHHHHHHhh
Q 015440 296 SLYNAFENGITAEQIISFLQQ 316 (406)
Q Consensus 296 Sv~~A~~~GITA~QIi~fL~~ 316 (406)
=|+.|+.+||+-+|.-.||+-
T Consensus 8 lVkeAM~SGvSK~QFrEflef 28 (35)
T d1b0na1 8 LVRDAMTSGVSKKQFREFLDY 28 (35)
T ss_dssp HHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHH
Confidence 478999999999999999973
No 3
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}
Probab=63.91 E-value=13 Score=27.87 Aligned_cols=76 Identities=11% Similarity=0.201 Sum_probs=57.3
Q ss_pred HHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecCCC-ceeEEeCHH-HHHHHHHHH
Q 015440 35 AILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKK-ETTYRLNST-FQSNLQKHL 112 (406)
Q Consensus 35 aIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~~~-~~~~~Ln~~-F~~~lr~aL 112 (406)
.+|+.|..-.+.-|+.+|. ++|....++..=+.- +.......++.|++.+|+...+.| ...|.||.. +++-++.++
T Consensus 10 ~~fkaL~d~~Rl~Il~~L~-~~~~~v~el~~~l~~-s~~~vS~HL~~L~~~glv~~~r~G~~~~Y~l~~~~v~~ll~~~l 87 (94)
T d1r1ua_ 10 EIFKALGDYNRIRIMELLS-VSEASVGHISHQLNL-SQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAI 87 (94)
T ss_dssp HHHHHTCSHHHHHHHHHHH-HCCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH-cCCccHHHHHHHHCC-CHHHHHHHHHHHHHCCceEEEEECCEEEEEECcHHHHHHHHHHH
Confidence 5888888888888888886 678999999887764 477888899999999999875434 467889965 444444443
No 4
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}
Probab=62.22 E-value=8.8 Score=29.56 Aligned_cols=79 Identities=10% Similarity=0.080 Sum_probs=59.9
Q ss_pred hhHHHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecCCCc-eeEEeCHHHHHHHH
Q 015440 31 FICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKE-TTYRLNSTFQSNLQ 109 (406)
Q Consensus 31 ~tclaIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~~~~-~~~~Ln~~F~~~lr 109 (406)
...-.+|+.|..=.+--|+..|..+++.+..++..=+.- +.......++.|++-+|+...+.|. ..|.||+..-..+-
T Consensus 19 ~~~~~~~kaLadp~Rl~Il~~L~~~~~~~v~ela~~l~~-s~s~vS~HL~~L~~aGlv~~~r~G~~~~Y~l~~~~i~~ll 97 (108)
T d1u2wa1 19 SGVSQILKAIADENRAKITYALCQDEELCVCDIANILGV-TIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIM 97 (108)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHSSCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhCCCccHHHHHHHHcc-ChhHHHHHHHHHHHCCeeEEEEECCEEEEEECHHHHHHHH
Confidence 334568888888888889999988889998998887665 4778888999999999998754443 66899987655544
Q ss_pred H
Q 015440 110 K 110 (406)
Q Consensus 110 ~ 110 (406)
.
T Consensus 98 ~ 98 (108)
T d1u2wa1 98 M 98 (108)
T ss_dssp H
T ss_pred H
Confidence 3
No 5
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}
Probab=60.42 E-value=7.9 Score=33.81 Aligned_cols=125 Identities=15% Similarity=0.198 Sum_probs=84.0
Q ss_pred cceEEEeeCceEEeecCChhHHHHHHHHHhhHhcCCceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHhhcCC
Q 015440 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG---AITKESLYNAFENGI-------TAEQIISFLQQNAH 319 (406)
Q Consensus 250 ~g~iivETNfrvYAYt~s~l~iaiL~lF~~l~~r~pnmvvg---~iTreSv~~A~~~GI-------TA~QIi~fL~~hah 319 (406)
.|+=++|-=+| +|--.. ....+..++|++.|| ++|.+.+++|.+.|. +-..++.+-..+-.
T Consensus 41 ~Gi~~iEitl~------~p~a~~---~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivsP~~~~~v~~~a~~~~i 111 (216)
T d1mxsa_ 41 GGIRTLEVTLR------SQHGLK---AIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPGITEDILEAGVDSEI 111 (216)
T ss_dssp TTCCEEEEESS------STHHHH---HHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECSSCCHHHHHHHHHCSS
T ss_pred CCCCEEEEeCC------ChhHHH---HHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEECCCCcHHHHHHHHhcCC
Confidence 35556665544 454444 445666689999999 899999999999996 46788888887765
Q ss_pred ccccccCCCCCh--hHHHHHHHHHHhcCceeeccceeecCCCCHHHHHHHHHHHHHcCeEeeecCCCceEEEeccccHHH
Q 015440 320 PRVADRIPSVPE--NVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHM 397 (406)
Q Consensus 320 p~m~~~~p~iP~--tV~dQIrlWe~E~~R~~~~~g~L~~~f~s~~~f~~~~~ya~~~g~llW~~~~kr~~~V~~~~h~~v 397 (406)
| .+|= |..+=...|+.--+-+++.++-.. .=.+|-+.+...+ +.-+.+-+..=.-+++
T Consensus 112 ~-------~iPGv~TpsEi~~A~~~G~~~vKlFPA~~~----------~g~~~ikal~~p~---p~~~fiptGGV~~~n~ 171 (216)
T d1mxsa_ 112 P-------LLPGISTPSEIMMGYALGYRRFKLFPAEIS----------GGVAAIKAFGGPF---GDIRFCPTGGVNPANV 171 (216)
T ss_dssp C-------EECEECSHHHHHHHHTTTCCEEEETTHHHH----------THHHHHHHHHTTT---TTCEEEEBSSCCTTTH
T ss_pred C-------ccCCcCCHHHHHHHHHCCCCEEEecccccc----------ccHHHHHHHhccc---ccCceeccCCCCHHHH
Confidence 5 6775 788889999999999999885321 0144555544333 3333333333344568
Q ss_pred HHHHhh
Q 015440 398 REFLRG 403 (406)
Q Consensus 398 ~~f~k~ 403 (406)
++|++.
T Consensus 172 ~~yl~~ 177 (216)
T d1mxsa_ 172 RNYMAL 177 (216)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 888763
No 6
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}
Probab=59.75 E-value=9.1 Score=33.23 Aligned_cols=157 Identities=19% Similarity=0.263 Sum_probs=99.3
Q ss_pred HHHHHHHhhhcCeeeEeeC-CCcceecchhhhhhhccCCCcccccccceEEEeeCceEEeecCChhHHHHHHHHHhhHhc
Q 015440 205 QRSMIKDFADLGLVKLQQG-RKESWFIPTKLATNLSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQ 283 (406)
Q Consensus 205 q~~~L~~L~~lGLVy~~~~-~~~~fy~pT~La~~Lt~~~~~~~~~~~g~iivETNfrvYAYt~s~l~iaiL~lF~~l~~r 283 (406)
-+++++.|.+.++|-.-.. +... .-+++-.|. +.|.=++|-=+| +|-- +....++..+
T Consensus 4 ~~~~~~~l~~~~iipvlr~~~~~~---~~~~~~al~---------~~Gi~~iEitl~------~~~a---~~~I~~l~~~ 62 (212)
T d1vhca_ 4 TQQIIEKLRELKIVPVIALDNADD---ILPLADTLA---------KNGLSVAEITFR------SEAA---ADAIRLLRAN 62 (212)
T ss_dssp HHHHHHHHHHHCEEEEECCSSGGG---HHHHHHHHH---------HTTCCEEEEETT------STTH---HHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEEEeCCCHHH---HHHHHHHHH---------HCCCCEEEEeCC------ChhH---HHHHHHHHhc
Confidence 3568888999999866432 2111 112222222 235566665555 3332 3344566678
Q ss_pred CCceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHhhcCCccccccCCCCCh--hHHHHHHHHHHhcCceeecc
Q 015440 284 LPNLIVG---AITKESLYNAFENGI-------TAEQIISFLQQNAHPRVADRIPSVPE--NVCDQIRLWESDLNRVEMTP 351 (406)
Q Consensus 284 ~pnmvvg---~iTreSv~~A~~~GI-------TA~QIi~fL~~hahp~m~~~~p~iP~--tV~dQIrlWe~E~~R~~~~~ 351 (406)
+|++.+| ++|.+.+++|.+.|- .-++++.+-..+-.| .+|= |..+=...|+.-.+-+++.+
T Consensus 63 ~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~~~~~v~~~a~~~~i~-------~iPGv~TpsEi~~A~~~G~~~vK~FP 135 (212)
T d1vhca_ 63 RPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFP-------ITPGVNNPMAIEIALEMGISAVKFFP 135 (212)
T ss_dssp CTTCEEEEESCCSHHHHHHHHHHTCSEEECSSCCHHHHHHHHHTTCC-------EECEECSHHHHHHHHHTTCCEEEETT
T ss_pred CCCceEeeeecccHHHHHHHHhhCCcEEECCCCCHHHHHHHHhcCCC-------ccCCcCCHHHHHHHHHCCCCEEEEcc
Confidence 9999999 899999999999995 356899998887655 7774 88888899999999999988
Q ss_pred ceeecCCCCHHHHHHHHHHHHHcCeEeeecCCCceEEEeccccHHHHHHHh
Q 015440 352 AHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 402 (406)
Q Consensus 352 g~L~~~f~s~~~f~~~~~ya~~~g~llW~~~~kr~~~V~~~~h~~v~~f~k 402 (406)
+-.+ . =.+|.+.+...+ +.-+.+-+..=.-+++++|++
T Consensus 136 A~~~---g-------G~~~lkal~~p~---p~~~~~ptGGV~~~N~~~yl~ 173 (212)
T d1vhca_ 136 AEAS---G-------GVKMIKALLGPY---AQLQIMPTGGIGLHNIRDYLA 173 (212)
T ss_dssp TTTT---T-------HHHHHHHHHTTT---TTCEEEEBSSCCTTTHHHHHT
T ss_pred cccc---c-------hHHHHHHHhccc---cCCeEEecCCCCHHHHHHHHh
Confidence 6322 0 133444433222 233333333334566788775
No 7
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}
Probab=56.57 E-value=9.9 Score=33.03 Aligned_cols=125 Identities=18% Similarity=0.260 Sum_probs=84.2
Q ss_pred cceEEEeeCceEEeecCChhHHHHHHHHHhhHhcCCceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHhhcCC
Q 015440 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG---AITKESLYNAFENGI-------TAEQIISFLQQNAH 319 (406)
Q Consensus 250 ~g~iivETNfrvYAYt~s~l~iaiL~lF~~l~~r~pnmvvg---~iTreSv~~A~~~GI-------TA~QIi~fL~~hah 319 (406)
.|.=++|-=+| +|-- +..+.++..+||++.+| ++|.+.+++|.+.|. +-..++.+...+-.
T Consensus 39 ~Gi~~iEitl~------tp~a---~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~~~~~v~~~a~~~~i 109 (213)
T d1wbha1 39 GGVRVLNVTLR------TECA---VDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLKAATEGTI 109 (213)
T ss_dssp TTCCEEEEESC------STTH---HHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESSCCHHHHHHHHHSSS
T ss_pred CCCCEEEEeCC------ChhH---HHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECCCCCHHHHHHHHhcCC
Confidence 35556665554 3333 44455566789999999 799999999999995 45678888888765
Q ss_pred ccccccCCCCCh--hHHHHHHHHHHhcCceeeccceeecCCCCHHHHHHHHHHHHHcCeEeeecCCCceEEEeccccHHH
Q 015440 320 PRVADRIPSVPE--NVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHM 397 (406)
Q Consensus 320 p~m~~~~p~iP~--tV~dQIrlWe~E~~R~~~~~g~L~~~f~s~~~f~~~~~ya~~~g~llW~~~~kr~~~V~~~~h~~v 397 (406)
| .+|= |..+=...|+.-.+-+++.++-.+ . =.+|.+.+...+ +.-+.+-+..=.-+++
T Consensus 110 ~-------~iPGv~TpsEi~~A~~~G~~~vKlFPA~~~---G-------g~~~lkal~~p~---p~~~~~ptGGV~~~n~ 169 (213)
T d1wbha1 110 P-------LIPGISTVSELMLGMDYGLKEFKFFPAEAN---G-------GVKALQAIAGPF---SQVRFCPTGGISPANY 169 (213)
T ss_dssp C-------EEEEESSHHHHHHHHHTTCCEEEETTTTTT---T-------HHHHHHHHHTTC---TTCEEEEBSSCCTTTH
T ss_pred C-------ccCCcCCHHHHHHHHHCCCCEEEeccchhc---C-------hHHHHHHhcCcc---cCCceeeeCCCCHHHH
Confidence 5 6774 788888899999999999987433 1 134445544332 3334444334445668
Q ss_pred HHHHhh
Q 015440 398 REFLRG 403 (406)
Q Consensus 398 ~~f~k~ 403 (406)
++|++.
T Consensus 170 ~~yl~~ 175 (213)
T d1wbha1 170 RDYLAL 175 (213)
T ss_dssp HHHHTS
T ss_pred HHHHhC
Confidence 888763
No 8
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=51.15 E-value=17 Score=26.65 Aligned_cols=65 Identities=9% Similarity=0.000 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeec----CCCceeEEeCHHHHHHHH
Q 015440 44 AKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEE----KKKETTYRLNSTFQSNLQ 109 (406)
Q Consensus 44 ak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~----~~~~~~~~Ln~~F~~~lr 109 (406)
.+.-||..|...++++.+++...+.- .+......+++|.+.++++.. .+....|.|++.=++-+.
T Consensus 17 ~r~~IL~~L~~~~~~~~~eLa~~l~i-s~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~~~ 85 (100)
T d1ub9a_ 17 VRLGIMIFLLPRRKAPFSQIQKVLDL-TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAK 85 (100)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHHHhccCCCeeHHHHHHHHhh-ccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHHHHH
Confidence 36668899988889999999998854 477888889999999999752 123366889987555443
No 9
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}
Probab=45.29 E-value=28 Score=29.60 Aligned_cols=125 Identities=14% Similarity=0.212 Sum_probs=81.5
Q ss_pred cceEEEeeCceEEeecCChhHHHHHHHHHhhHhcCCceEEEE---eCHHHHHHHHHcCCC-------HHHHHHHHhhcCC
Q 015440 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA---ITKESLYNAFENGIT-------AEQIISFLQQNAH 319 (406)
Q Consensus 250 ~g~iivETNfrvYAYt~s~l~iaiL~lF~~l~~r~pnmvvg~---iTreSv~~A~~~GIT-------A~QIi~fL~~hah 319 (406)
.|.=++|-.+| +|--...++-..+ ...|++.||. +|++.+++|.+.|-. -.+++.+...+-+
T Consensus 33 ~Gi~~iEitlr------~p~a~~~i~~l~~--~~~~~~~vGaGTV~~~~~~~~a~~aGa~fivsP~~~~~v~~~~~~~~i 104 (202)
T d1wa3a1 33 GGVHLIEITFT------VPDADTVIKELSF--LKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGV 104 (202)
T ss_dssp TTCCEEEEETT------STTHHHHHHHTHH--HHHTTCEEEEESCCSHHHHHHHHHHTCSEEECSSCCHHHHHHHHHHTC
T ss_pred cCCCEEEEecC------CccHHHHHHHHHH--hcCCCcEEEecccccHHHHHHHHhhcccEEeCCCCcHHHHHHHHhcCC
Confidence 47778898877 3433334433222 2349999985 999999999999853 4678888887776
Q ss_pred ccccccCCCCCh--hHHHHHHHHHHhcCceeeccceeecCCCCHHHHHHHHHHHHHcCeEeeecCCCceEEEeccccHHH
Q 015440 320 PRVADRIPSVPE--NVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHM 397 (406)
Q Consensus 320 p~m~~~~p~iP~--tV~dQIrlWe~E~~R~~~~~g~L~~~f~s~~~f~~~~~ya~~~g~llW~~~~kr~~~V~~~~h~~v 397 (406)
| .+|- |..+=.+-|+.-.+-+++.++-.+ . -+|.+.+...+ +.-+.+-+..=.-+++
T Consensus 105 ~-------~iPGv~TpsEi~~A~~~G~~~lK~fPa~~~----------G-~~~lk~l~~p~---p~i~~iptGGI~~~n~ 163 (202)
T d1wa3a1 105 F-------YMPGVMTPTELVKAMKLGHTILKLFPGEVV----------G-PQFVKAMKGPF---PNVKFVPTGGVNLDNV 163 (202)
T ss_dssp E-------EECEECSHHHHHHHHHTTCCEEEETTHHHH----------H-HHHHHHHHTTC---TTCEEEEBSSCCTTTH
T ss_pred c-------eeCCcCcHHHHHHHHHCCCCEEEecchhhc----------C-HHHHHHHhCcc---cCCcEEeeCCCCHHHH
Confidence 6 6664 777888889988888888775322 1 25666654332 3333333223335678
Q ss_pred HHHHhh
Q 015440 398 REFLRG 403 (406)
Q Consensus 398 ~~f~k~ 403 (406)
++|++.
T Consensus 164 ~~~l~a 169 (202)
T d1wa3a1 164 CEWFKA 169 (202)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 888763
No 10
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=42.80 E-value=7.1 Score=27.99 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=40.5
Q ss_pred hhHHHHHHHHhCCcCCCCCCCCChhHHHHHHhcCCcccchhhhccchhhhhccccCCCCCHHHHHHHHHhhhcCeeeEee
Q 015440 143 GQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQ 222 (406)
Q Consensus 143 ~kWE~IL~~mVgs~~~~~~~~~s~~v~~lL~~~gLm~~~lf~Ls~l~~~lG~~Ys~~~Lt~tq~~~L~~L~~lGLVy~~~ 222 (406)
++...||.|+...-.. .+.++++.++-.+.|+-+ +.+-...|..|.+.|+|-...
T Consensus 5 ~rQ~~vL~~I~~~~~~---~G~~Ps~rei~~~~g~~S----------------------~stv~~~l~~Le~kG~I~r~~ 59 (71)
T d1jhfa1 5 ARQQEVFDLIRDHISQ---TGMPPTRAEIAQRLGFRS----------------------PNAAEEHLKALARKGVIEIVS 59 (71)
T ss_dssp HHHHHHHHHHHHHHHH---HSSCCCHHHHHHHTTCSS----------------------HHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHHHHHHHHH---hCCCCCHHHHHHHcCCCC----------------------HHHHHHHHHHHHHCcCeecCC
Confidence 4556677777755432 466777778776666632 456788999999999997764
Q ss_pred CCCc
Q 015440 223 GRKE 226 (406)
Q Consensus 223 ~~~~ 226 (406)
+.++
T Consensus 60 ~~~R 63 (71)
T d1jhfa1 60 GASR 63 (71)
T ss_dssp SSSS
T ss_pred CCCc
Confidence 4433
No 11
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=41.58 E-value=6.4 Score=28.08 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=23.9
Q ss_pred CHHHHHHHHHhhhcCeeeEeeCCCccee
Q 015440 202 SEIQRSMIKDFADLGLVKLQQGRKESWF 229 (406)
Q Consensus 202 t~tq~~~L~~L~~lGLVy~~~~~~~~fy 229 (406)
.-||-++=+||+|+|+|..+..++...|
T Consensus 34 ~vTQaTlSRDL~eLg~vKv~~~~g~~~Y 61 (63)
T d2p5ka1 34 KVTQATVSRDIKELHLVKVPTNNGSYKY 61 (63)
T ss_dssp CCCHHHHHHHHHHHTCEEEEETTTEEEE
T ss_pred CeeHHHHHHHHHHhCCEEeeCCCCcEEe
Confidence 4578889999999999999987777777
No 12
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=39.82 E-value=9.4 Score=28.65 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=27.2
Q ss_pred CHHHHHHHHHhhhcCeeeEeeCCCcceecchhhhhhh
Q 015440 202 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL 238 (406)
Q Consensus 202 t~tq~~~L~~L~~lGLVy~~~~~~~~fy~pT~La~~L 238 (406)
+-|-++.|..|.+.|+|.+.-..++ -- ||..+..+
T Consensus 39 ~aTIRn~m~~LE~~G~l~~~h~s~G-ri-PT~~g~r~ 73 (87)
T d1stza1 39 SATIRNDMKKLEYLGYIYQPHTSAG-RI-PTDKGLRF 73 (87)
T ss_dssp HHHHHHHHHHHHHTTSEECCSSCSC-BE-ECHHHHHH
T ss_pred HHHHHHHHHHHHHCCcccCCCCCCC-Cc-ccHHHHHH
Confidence 6889999999999999988643333 34 99988654
No 13
>d1kwma2 d.58.3.1 (A:1A-95A) Procarboxypeptidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.14 E-value=38 Score=24.90 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=41.1
Q ss_pred eec-CCCCHHHHHHHHHHHHHcCeEeeecCCC--------ceEEEeccccHHHHHHHhhc
Q 015440 354 YYE-EFPSRDVFEAACDYARDRSGLLWEDSKK--------MRLVVNAEIHMHMREFLRGQ 404 (406)
Q Consensus 354 L~~-~f~s~~~f~~~~~ya~~~g~llW~~~~k--------r~~~V~~~~h~~v~~f~k~~ 404 (406)
+|+ ...|.++.+.+.+.+++.++-.|..+.. -.+.|+++..+.+++|+++.
T Consensus 12 V~rV~~~~~~q~~~L~~L~~~~~ldfW~~~s~~~~~~g~~vdv~V~p~~~~~~~~~L~~~ 71 (95)
T d1kwma2 12 VFRVNVEDENHINIIRELASTTQIDFWKPDSVTQIKPHSTVDFRVKAEDTVTVENVLKQN 71 (95)
T ss_dssp EEEEEECSHHHHHHHHHHHHHSCEEEEESSSGGGCCSSEEEEEEECGGGHHHHHHHHHHT
T ss_pred EEEEEeCCHHHHHHHHHHhccCceEecCCCCccccCCCCeEEEEECHHHHHHHHHHHHHC
Confidence 444 3467888999999999999999986531 25899999999999999874
No 14
>d1b4aa1 a.4.5.3 (A:4-78) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=35.11 E-value=10 Score=27.86 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.1
Q ss_pred CHHHHHHHHHhhhcCeeeEeeCCCccee
Q 015440 202 SEIQRSMIKDFADLGLVKLQQGRKESWF 229 (406)
Q Consensus 202 t~tq~~~L~~L~~lGLVy~~~~~~~~fy 229 (406)
+-||-++=+||+++|+|..+..++..+|
T Consensus 32 ~vTQaTlSRDL~eLg~vKv~~~~g~~~Y 59 (75)
T d1b4aa1 32 NVTQATVSRDIKEMQLVKVPMANGRYKY 59 (75)
T ss_dssp CCCHHHHHHHHHHTTCEEEECSSSCEEE
T ss_pred ceeHHHHHHHHHHhCCEEeeCCCCcEEE
Confidence 4578899999999999999887777777
No 15
>d1wj5a_ a.4.5.59 (A:) OB fold-containing protein 1, Obfc1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.56 E-value=7.3 Score=31.16 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=22.7
Q ss_pred HHHHHHHHhhhcCeeeEeeCCC-cceecchh
Q 015440 204 IQRSMIKDFADLGLVKLQQGRK-ESWFIPTK 233 (406)
Q Consensus 204 tq~~~L~~L~~lGLVy~~~~~~-~~fy~pT~ 233 (406)
-.++.++-|.|-|+||++.+.. +.|| .|+
T Consensus 79 iFKeAi~~Lqe~G~VFqK~~~~D~lYy-VT~ 108 (120)
T d1wj5a_ 79 VFKNALQLLQEKGLVFQRDSGSDKLYY-VTT 108 (120)
T ss_dssp HHHHHHHHHHHHTSEECSSCSSSCCBE-ECS
T ss_pred HHHHHHHHHHHCCEEEecCCCccceEE-eec
Confidence 3466889999999999997644 4788 665
No 16
>d1aoya_ a.4.5.3 (A:) Arginine repressor (ArgR), N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=30.26 E-value=13 Score=27.54 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhcCeeeEeeCCCccee
Q 015440 203 EIQRSMIKDFADLGLVKLQQGRKESWF 229 (406)
Q Consensus 203 ~tq~~~L~~L~~lGLVy~~~~~~~~fy 229 (406)
-||-.+=+||+|+|+|..+..++..+|
T Consensus 41 vTQaTiSRDL~eLg~vKv~~~~g~~~Y 67 (78)
T d1aoya_ 41 INQSKVSRMLTKFGAVRTRNAKMEMVY 67 (78)
T ss_dssp CCHHHHHHHHHHHTCEEEECTTSCEEE
T ss_pred hhHHHHHHHHHHhCCEEeeCCCCCEEE
Confidence 368889999999999999987777778
No 17
>d1jqga2 d.58.3.1 (A:4P-100P) Procarboxypeptidase A {Cotton bollworm (Helicoverpa armigera) [TaxId: 29058]}
Probab=25.18 E-value=71 Score=23.03 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHcCeEeeecCC---CceEEEeccccHHHHHHHhhc
Q 015440 359 PSRDVFEAACDYARDRSGLLWEDSK---KMRLVVNAEIHMHMREFLRGQ 404 (406)
Q Consensus 359 ~s~~~f~~~~~ya~~~g~llW~~~~---kr~~~V~~~~h~~v~~f~k~~ 404 (406)
.+.++.+.+.++.+..++-.|..+. .-.+.|+++..+.+++|+++.
T Consensus 15 ~~~~q~~~L~~le~~~~~dfW~~~~~~~~vdI~V~p~~~~~f~~~L~~~ 63 (92)
T d1jqga2 15 ASMDQVKLVHDFENDLMLDVWSDAVPGRPGKVLVPKFKREIFENFLKQS 63 (92)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEECCBTTBCEEEEECGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCcEecCCCCCCeEEEEECHHHHHHHHHHHHHc
Confidence 5678889999999999999997532 247899999999999999864
No 18
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}
Probab=22.31 E-value=27 Score=25.39 Aligned_cols=27 Identities=7% Similarity=0.169 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhhcCeeeEeeCCCccee
Q 015440 203 EIQRSMIKDFADLGLVKLQQGRKESWF 229 (406)
Q Consensus 203 ~tq~~~L~~L~~lGLVy~~~~~~~~fy 229 (406)
.|-+.+|..|.+-|+|-.++.....+|
T Consensus 42 tTv~T~L~rL~~KG~l~~~k~gr~~~Y 68 (82)
T d1p6ra_ 42 KTIQTMLLRLIKKGALNHHKEGRVFVY 68 (82)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred hHHHHHHHHHHHCCCeEEEecCCeEEE
Confidence 578999999999999988775555555
No 19
>d2v9va2 a.4.5.35 (A:438-510) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=20.69 E-value=93 Score=21.38 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhHhcCCceEEEEeCHHHHHHHHHcCCCHHHHHHHHhhcCCccccccCCCCChhHHHHHHHHHHhcCceee
Q 015440 270 HCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEM 349 (406)
Q Consensus 270 ~iaiL~lF~~l~~r~pnmvvg~iTreSv~~A~~~GITA~QIi~fL~~hahp~m~~~~p~iP~tV~dQIrlWe~E~~R~~~ 349 (406)
+-.|++...+...+.| ++-||+.+.+.+-+. +.+|+.+.+.+--+-.+.+++..
T Consensus 7 ~~~i~~~L~~fH~~~P---------------~~~G~~keeLr~~l~-----------~~~~~~~f~~lL~~l~~~g~l~~ 60 (73)
T d2v9va2 7 WQAVTRALEEFHSRYP---------------LRPGLAREELRSRYF-----------SRLPARVYQALLEEWSREGRLQL 60 (73)
T ss_dssp HHHHHHHHHHHHHHCT---------------TSSCEEHHHHHHHHC-----------TTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHCc---------------cccCCCHHHHHHHhc-----------ccCCHHHHHHHHHHHHHCCChhe
Confidence 3456666666666666 345777777666543 46788888888888888899888
Q ss_pred ccceee
Q 015440 350 TPAHYY 355 (406)
Q Consensus 350 ~~g~L~ 355 (406)
..+++.
T Consensus 61 ~g~~v~ 66 (73)
T d2v9va2 61 AANTVA 66 (73)
T ss_dssp CSSEEE
T ss_pred eCCEEE
Confidence 887764
No 20
>d2boaa2 d.58.3.1 (A:4-99) Procarboxypeptidase A {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.06 E-value=90 Score=22.52 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=40.8
Q ss_pred eeccceeec-CCCCHHHHHHHHHHHHH--cCeEeeecCCC----ceEEEeccccHHHHHHHhhc
Q 015440 348 EMTPAHYYE-EFPSRDVFEAACDYARD--RSGLLWEDSKK----MRLVVNAEIHMHMREFLRGQ 404 (406)
Q Consensus 348 ~~~~g~L~~-~f~s~~~f~~~~~ya~~--~g~llW~~~~k----r~~~V~~~~h~~v~~f~k~~ 404 (406)
.|..--+|+ .-.|.++.+.+.++... .++-.|..+.. -.+.|+++..+.+++|+++.
T Consensus 3 ~y~G~qV~rV~p~~~~q~~~L~~L~~~~~~~ldfW~~p~~~~~~vdv~V~p~~~~~~~~~L~~~ 66 (94)
T d2boaa2 3 KFFGDQVLRINVRNGDEISKLSQLVNSNNLKLNFWKSPSSFNRPVDVLVPSVSLQAFKSFLRSQ 66 (94)
T ss_dssp CCTTCEEEEECCCSHHHHHHHHHHTTTTGGGCEEEECCCSSSSCEEEEECGGGHHHHHHHHHHT
T ss_pred cccCCEEEEEEcCCHHHHHHHHHHHhcCCCCeeeeCCCCCCCCeEEEEECHHHHHHHHHHHHHC
Confidence 344444555 34457778888888554 57788976533 36899999999999999875
Done!