BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015441
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XYG|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g19940
pdb|1XYG|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g19940
pdb|1XYG|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g19940
pdb|1XYG|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g19940
pdb|2Q49|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
pdb|2Q49|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
pdb|2Q49|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
pdb|2Q49|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
Length = 359
Score = 625 bits (1613), Expect = e-179, Method: Compositional matrix adjust.
Identities = 299/358 (83%), Positives = 326/358 (91%)
Query: 49 SLQVEDGKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF 108
S +V + K EK +RIGLLGASGYTGAEIVRLLANHP+F + LMTADRKAGQS+ SVF
Sbjct: 2 SFRVSASSSVKPEKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVF 61
Query: 109 PHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVS 168
PHL +Q LPT+V+VKDADFS VDAVFCCLPHGTTQEIIK LP +LKIVDLSADFRLR+++
Sbjct: 62 PHLRAQKLPTLVSVKDADFSTVDAVFCCLPHGTTQEIIKELPTALKIVDLSADFRLRNIA 121
Query: 169 EYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLI 228
EYEEWYGQPH A +LQKE VYGLTEI REDIK ARLVANPGCYPT+IQLPLVPL++ANLI
Sbjct: 122 EYEEWYGQPHKAVELQKEVVYGLTEILREDIKKARLVANPGCYPTTIQLPLVPLLKANLI 181
Query: 229 QYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVT 288
++ NIIIDAKSGVSGAGRGAKEANLYSEIAEGI SYGVTRHRHVPEIEQGL+ A SKVT
Sbjct: 182 KHENIIIDAKSGVSGAGRGAKEANLYSEIAEGISSYGVTRHRHVPEIEQGLSDVAQSKVT 241
Query: 289 VSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVR 348
VSFTPHLMPMIRGMQSTIYVEMAPGV EDL+QQLK SYE EEFVK+L++GVVPRTHNVR
Sbjct: 242 VSFTPHLMPMIRGMQSTIYVEMAPGVRTEDLHQQLKTSYEDEEFVKVLDEGVVPRTHNVR 301
Query: 349 GSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
GSNYC M+VFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLG+PE TGLL+QPLFP
Sbjct: 302 GSNYCHMSVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGYPETTGLLHQPLFP 359
>pdb|2CVO|A Chain A, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|B Chain B, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|C Chain C, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|D Chain D, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
Length = 366
Score = 575 bits (1483), Expect = e-164, Method: Compositional matrix adjust.
Identities = 275/348 (79%), Positives = 307/348 (88%)
Query: 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPT 118
KS ++VRI +LGASGYTGAEIVRLLANHP F IK+MTADRKAG+ GSVFPHLI+QDLP
Sbjct: 19 KSGEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPN 78
Query: 119 MVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPH 178
+VAVKDADFSNVDAVFC LPHGTTQEIIKGLP+ LKIVDLSADFRLRD++EY EWYG H
Sbjct: 79 LVAVKDADFSNVDAVFCXLPHGTTQEIIKGLPQELKIVDLSADFRLRDINEYAEWYGHSH 138
Query: 179 IAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAK 238
AP+LQ+EAVYGLTE+ R +I+NARLVANPGCYPTSIQLPLVPLI+A LI+ NIIIDAK
Sbjct: 139 RAPELQQEAVYGLTEVLRNEIRNARLVANPGCYPTSIQLPLVPLIKAKLIKVSNIIIDAK 198
Query: 239 SGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPM 298
SGVSGAGRGAKEANLY+EIAEGI++YG+ HRHVPEIEQGL+ A SKVT+SFTP+L+ M
Sbjct: 199 SGVSGAGRGAKEANLYTEIAEGIHAYGIKGHRHVPEIEQGLSEAAESKVTISFTPNLICM 258
Query: 299 IRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVF 358
RGMQST++VEMAPGVT DLYQ LK +YE EEFVKLL VP T +V GSNYC MNVF
Sbjct: 259 KRGMQSTMFVEMAPGVTANDLYQHLKSTYEGEEFVKLLNGSSVPHTRHVVGSNYCFMNVF 318
Query: 359 PDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
DRIPGRAIIISVIDNLVKGASGQA+QNLN+M+G PENTGL YQPLFP
Sbjct: 319 EDRIPGRAIIISVIDNLVKGASGQAVQNLNLMMGLPENTGLQYQPLFP 366
>pdb|1VKN|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|B Chain B, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|C Chain C, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|D Chain D, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
Length = 351
Score = 283 bits (724), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 148/343 (43%), Positives = 211/343 (61%), Gaps = 5/343 (1%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVK 123
+R G++GA+GYTG E+VRLL NHP I +++ AG+ + +FP + + + +
Sbjct: 14 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPE 73
Query: 124 DADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDL 183
N D +F LP G + ++++ L K +KI+DL ADFR D Y EWYG+ ++
Sbjct: 74 KVS-KNCDVLFTALPAGASYDLVREL-KGVKIIDLGADFRFDDPGVYREWYGK-ELSGYE 130
Query: 184 QKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSG 243
+ VYGL E+ RE+IKNA++V NPGCYPTS+ L L P ++ NL+ I++DAKSGVSG
Sbjct: 131 NIKRVYGLPELHREEIKNAQVVGNPGCYPTSVILALAPALKHNLVDPETILVDAKSGVSG 190
Query: 244 AGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQ 303
AGR K L+SE+ E + Y V +HRHVPE EQ L + KV V FTPHL+P RG+
Sbjct: 191 AGRKEKVDYLFSEVNESLRPYNVAKHRHVPEXEQELGKISGKKVNVVFTPHLVPXTRGIL 250
Query: 304 STIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIP 363
STIYV+ ++E++++ Y++E FV +L G+ P T GSN+ + +
Sbjct: 251 STIYVKTDK--SLEEIHEAYLEFYKNEPFVHVLPXGIYPSTKWCYGSNHVFIGXQXEERT 308
Query: 364 GRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
I+ S IDNLVKGASGQA+QN NI G E GL + P++P
Sbjct: 309 NTLILXSAIDNLVKGASGQAVQNXNIXFGLDETKGLEFTPIYP 351
>pdb|2I3A|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis
pdb|2I3A|B Chain B, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis
pdb|2I3A|C Chain C, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis
pdb|2I3A|D Chain D, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis
pdb|2I3G|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis In
Complex With Nadp+.
pdb|2I3G|B Chain B, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis In
Complex With Nadp+
Length = 352
Score = 197 bits (502), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 129/353 (36%), Positives = 187/353 (52%), Gaps = 18/353 (5%)
Query: 56 KTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFG-----IKLMTADRKAGQSIGSVFPH 110
+ ++ ++ + GASGY G EI+RLL HP + I +TA AG ++G PH
Sbjct: 2 QNRQVANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPH 61
Query: 111 LISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEY 170
L + + A DAVF LPHG + + + L I+D ADFRL D + +
Sbjct: 62 LTPLAHRVVEPTEAAVLGGHDAVFLALPHGHSAVLAQQLSPETLIIDCGADFRLTDAAVW 121
Query: 171 EEWYGQPHIAPDLQKEAVYGLTEI--SREDIKNARLVANPGCYPTSIQLPLVPLIQANLI 228
E +YG H YGL E+ +R+ ++ R +A PGCYPT+ L L P + A+LI
Sbjct: 122 ERFYGSSH-----AGSWPYGLPELPGARDQLRGTRRIAVPGCYPTAALLALFPALAADLI 176
Query: 229 QYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGLTGFASSKV 287
+ + + A SG SGAGR A L +E+ +Y + HRH PEI QGL V
Sbjct: 177 E-PAVTVVAVSGTSGAGRAATTDLLGAEVIGSARAYNIAGVHRHTPEIAQGLRAVTDRDV 235
Query: 288 TVSFTPHLMPMIRGMQSTIYVEM-APGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHN 346
+VSFTP L+P RG+ +T +P + Y++ +Y E F+ L+ +G +PRT
Sbjct: 236 SVSFTPVLIPASRGILATCTARTRSPLSQLRAAYEK---AYHAEPFIYLMPEGQLPRTGA 292
Query: 347 VRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGL 399
V GSN + V D + I+ IDNLVKG +G A+Q++N+ LG+PE GL
Sbjct: 293 VIGSNAAHIAVAVDEDAQTFVAIAAIDNLVKGTAGAAVQSMNLALGWPETDGL 345
>pdb|2G17|A Chain A, The Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase From Salmonella Typhimurium
Length = 337
Score = 194 bits (493), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 183/341 (53%), Gaps = 20/341 (5%)
Query: 68 LLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPHLIS-QDLPTMVAVK 123
++GASGY GAE+V + HP+ I +T + AG+ I + P L DLP
Sbjct: 9 IVGASGYAGAELVSYVNRHPHXTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPXSD 68
Query: 124 DADFS-NVDAVFCCLPHGTTQEII-KGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAP 181
DFS +VD VF H + ++ + L + DLS FR+ D + YE++YG H P
Sbjct: 69 VRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYGFTHQYP 128
Query: 182 DLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNI-IIDAKSG 240
+L ++AVYGL E + + + A L+A PGCYPT+ QL L PLI L+ +I+A SG
Sbjct: 129 ELLEQAVYGLAEWNVDKLNTANLIAVPGCYPTAAQLSLKPLIDGGLLDLTQWPVINATSG 188
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIR 300
VSGAGR A +N + E++ + YGV HRH PEI L V FTPHL R
Sbjct: 189 VSGAGRKAAISNSFCEVS--LQPYGVFTHRHQPEIAVHL------GAEVIFTPHLGNFPR 240
Query: 301 GMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPD 360
G+ TI + GVT + L+ +Y + V+L +KG VP NV G +C +
Sbjct: 241 GILETITCRLKAGVTHAQVADVLQKAYGDKPLVRLYDKG-VPALKNVVGLPFCDIGF--- 296
Query: 361 RIPG-RAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLL 400
+ G I+++ DNL+KGA+ QA+Q NI GF E L+
Sbjct: 297 AVQGEHLIVVATEDNLLKGAAAQAVQCANIRFGFAETQSLI 337
>pdb|2NQT|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis At
1.58 A Resolution
pdb|2NQT|B Chain B, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis At
1.58 A Resolution
Length = 352
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 128/353 (36%), Positives = 186/353 (52%), Gaps = 18/353 (5%)
Query: 56 KTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFG-----IKLMTADRKAGQSIGSVFPH 110
+ ++ ++ + GASGY G EI+RLL HP + I +TA AG ++G PH
Sbjct: 2 QNRQVANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPH 61
Query: 111 LISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEY 170
L + + A DAVF LPHG + + + L I+D ADFRL D + +
Sbjct: 62 LTPLAHRVVEPTEAAVLGGHDAVFLALPHGHSAVLAQQLSPETLIIDCGADFRLTDAAVW 121
Query: 171 EEWYGQPHIAPDLQKEAVYGLTEI--SREDIKNARLVANPGCYPTSIQLPLVPLIQANLI 228
E +YG H YGL E+ +R+ ++ R +A PG YPT+ L L P + A+LI
Sbjct: 122 ERFYGSSH-----AGSWPYGLPELPGARDQLRGTRRIAVPGXYPTAALLALFPALAADLI 176
Query: 229 QYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGLTGFASSKV 287
+ + + A SG SGAGR A L +E+ +Y + HRH PEI QGL V
Sbjct: 177 E-PAVTVVAVSGTSGAGRAATTDLLGAEVIGSARAYNIAGVHRHTPEIAQGLRAVTDRDV 235
Query: 288 TVSFTPHLMPMIRGMQSTIYVEM-APGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHN 346
+VSFTP L+P RG+ +T +P + Y++ +Y E F+ L+ +G +PRT
Sbjct: 236 SVSFTPVLIPASRGILATCTARTRSPLSQLRAAYEK---AYHAEPFIYLMPEGQLPRTGA 292
Query: 347 VRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGL 399
V GSN + V D + I+ IDNLVKG +G A+Q++N+ LG+PE GL
Sbjct: 293 VIGSNAAHIAVAVDEDAQTFVAIAAIDNLVKGTAGAAVQSMNLALGWPETDGL 345
>pdb|3DR3|A Chain A, Structure Of Idp00107, A Potential N-Acetyl-Gamma-
Glutamylphosphate Reductase From Shigella Flexneri
Length = 337
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 131/341 (38%), Positives = 185/341 (54%), Gaps = 20/341 (5%)
Query: 68 LLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPHLIS-QDLPTMVAVK 123
++GASGY GAE+V + HP+ I +T + AG+ I + P L +LP
Sbjct: 9 IVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSD 68
Query: 124 DADFS-NVDAVFCCLPHGTTQEII-KGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAP 181
++FS VD VF H + ++ + L + DLS FR+ D + YE++YG H P
Sbjct: 69 ISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGFTHQYP 128
Query: 182 DLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNI-IIDAKSG 240
+L ++A YGL E +K A L+A PGCYPT+ QL L PLI A+L+ +I+A SG
Sbjct: 129 ELLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAAQLALKPLIDADLLDLNQWPVINATSG 188
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIR 300
VSGAGR A +N + E++ + YGV HRH PEI L V FTPHL R
Sbjct: 189 VSGAGRKAAISNSFCEVS--LQPYGVFTHRHQPEIATHL------GADVIFTPHLGNFPR 240
Query: 301 GMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPD 360
G+ TI + GVT + Q L+ +Y H+ V+L +KG VP NV G +C +
Sbjct: 241 GILETITCRLKSGVTQAQVAQALQQAYAHKPLVRLYDKG-VPALKNVVGLPFCDIGF--- 296
Query: 361 RIPG-RAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLL 400
+ G II++ DNL+KGA+ QA+Q NI G+ E L+
Sbjct: 297 AVQGEHLIIVATEDNLLKGAAAQAVQCANIRFGYAETQSLI 337
>pdb|2OZP|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Ttha1904) From Thermus Thermophilus
Length = 345
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 178/346 (51%), Gaps = 12/346 (3%)
Query: 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDA 125
+ ++GASGY G E +RL +HPY +K +T+ R AG+ + V P+L + + V
Sbjct: 7 LSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRT--NLKFVPPE 64
Query: 126 DFSNVDAVFCCLPHGT-TQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQ 184
D + LPHG +E + + +VDLSADFRL+D Y +YG+ H PDL
Sbjct: 65 KLEPADILVLALPHGVFAREFDRYSALAPVLVDLSADFRLKDPELYRRYYGE-HPRPDLL 123
Query: 185 KEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGA 244
VY + E+ RE +K A +A GC T+ L L PL++A +++ I + S
Sbjct: 124 GRFVYAVPELYREALKGADWIAGAGCNATATLLGLYPLLKAGVLKPTPIFVTLLISTSAG 183
Query: 245 GRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQS 304
G A A+ + E A I Y T HRH E+ + L G + V T +RG+
Sbjct: 184 GAEASPASHHPERAGSIRVYKPTGHRHTAEVVENLPG----RPEVHLTAIATDRVRGILX 239
Query: 305 TIYVEMAPGVTIEDLYQQLKISYEHEEFVKLL--EKGV--VPRTHNVRGSNYCLMNVFPD 360
T + G + D++Q + +Y E F++L+ +KGV P V+G+NY + +
Sbjct: 240 TAQCFVQDGWSERDVWQAYREAYAGEPFIRLVKQKKGVHRYPDPRFVQGTNYADIGFELE 299
Query: 361 RIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
GR ++ + IDNLVKG +G ALQ LN+ G+PE GL + L P
Sbjct: 300 EDTGRLVVXTAIDNLVKGTAGHALQALNVRXGWPETLGLDFPGLHP 345
>pdb|2EP5|A Chain A, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|B Chain B, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|C Chain C, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|D Chain D, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
Length = 350
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 20/192 (10%)
Query: 63 QVRIGLLGASGYTGAEIVRLLANHPYFG-IKLMTADRKAGQSIGSVFPHLISQDLPT--- 118
++++ LLG++G G ++V++LA HPY +K+ + K G+ + D+P
Sbjct: 4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQ 63
Query: 119 ---MVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSAD-FRLR-DVSEYEEW 173
+V+ D +VD V LP+ + I L K+ KIV +A FR+ DV
Sbjct: 64 DLPIVSTNYEDHKDVDVVLSALPNELAESIELELVKNGKIVVSNASPFRMDPDV------ 117
Query: 174 YGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNI 233
P I P++ E + L LV NP C + +P+ PLI+ + I
Sbjct: 118 ---PLINPEINWEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPIKPLIE--IATKSKI 172
Query: 234 IIDAKSGVSGAG 245
II VSGAG
Sbjct: 173 IITTLQAVSGAG 184
>pdb|1YS4|A Chain A, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
pdb|1YS4|B Chain B, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
Length = 354
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 116/279 (41%), Gaps = 28/279 (10%)
Query: 59 KSEK-QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDL 116
K EK ++++G+LGA+G G V+LLA+HP F + + A +R AG+ +D+
Sbjct: 3 KGEKXKIKVGVLGATGSVGQRFVQLLADHPXFELTALAASERSAGKKYKDACYWFQDRDI 62
Query: 117 PTMVA--------VKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVS 168
P + K +F +VD VF LP ++ K K++ + S
Sbjct: 63 PENIKDXVVIPTDPKHEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLI-------FSNAS 115
Query: 169 EYEEWYGQPHIAPDLQKEAVYGLTEISREDIK-NARLVANPGCYPTSIQLPLVPLIQANL 227
Y P + P++ + + L EI RE + ++ NP C + L P+ +
Sbjct: 116 AYRXEEDVPLVIPEVNADHLE-LIEIQREKRGWDGAIITNPNCSTICAVITLKPI--XDK 172
Query: 228 IQYRNIIIDAKSGVSGAGRGAKEA-----NLYSEIAEGIYSYGVTRHRHVPEIEQGLTGF 282
+ I VSGAG + NL I + + ++ G
Sbjct: 173 FGLEAVFIATXQAVSGAGYNGVPSXAILDNLIPFIKNEEEKXQTESLKLLGTLKDGKVEL 232
Query: 283 ASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQ 321
A+ K++ S + + +I G +I+V+ G E++ +
Sbjct: 233 ANFKISASC--NRVAVIDGHTESIFVKTKEGAEPEEIKE 269
>pdb|4DPK|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPK|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPK|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPK|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPM|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|E Chain E, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|F Chain F, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPL|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
pdb|4DPL|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
pdb|4DPL|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
pdb|4DPL|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
Length = 359
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/332 (20%), Positives = 129/332 (38%), Gaps = 29/332 (8%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
+ ++ +LGA+G G E VR+L+NHPY + G+ G V +P +A
Sbjct: 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIA 65
Query: 122 ---VKDAD---FSNVDAVFCCLPHGTTQEIIKGLPKS-LKIVDLSADFRLR-DVSEYEEW 173
+K D +VD +F LP G + + K ++ S D R DV
Sbjct: 66 DMEIKPTDPKLMDDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDV------ 119
Query: 174 YGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNI 233
P + P+L + + E + +V P C +PL + + +
Sbjct: 120 ---PLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPLGAIFKD--YKMDGA 174
Query: 234 IIDAKSGVSGAGR-GAKEANLYSEI---AEGIYSYGVTR-HRHVPEIEQGLTGFASSKVT 288
I +SGAG G ++ I +G + + R + E+++ + V+
Sbjct: 175 FITTIQSLSGAGYPGIPSLDVVDNILPLGDGYDAKTIKEIFRILSEVKRNVDEPKLEDVS 234
Query: 289 VSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKL---LEKGVVPRTH 345
++ T H + I G +YV E + + L+ + +KL K ++
Sbjct: 235 LAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMNE 294
Query: 346 NVRGSNYCLMNVFPDRIPGRAIIISVIDNLVK 377
+ R Y + + IPG ++++ + + K
Sbjct: 295 DTRPQVY--FDRWAGDIPGMSVVVGRLKQVNK 324
>pdb|2YV3|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
pdb|2YV3|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
Length = 331
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 113/288 (39%), Gaps = 55/288 (19%)
Query: 64 VRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
+R+ ++GA+G G EI+++L N P ++L + R AG + + + LP
Sbjct: 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPE--- 57
Query: 122 VKDADFSNVDAVFCCLPHGTTQ-EIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIA 180
VD V G ++ + + +VD S+ +R YE W P +
Sbjct: 58 ----GPLPVDLVLASAGGGISRAKALVWAEGGALVVDNSSAWR------YEPWV--PLVV 105
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSG 240
P++ +E ++ ++ ++ANP C + + L PL +A Q + +I+
Sbjct: 106 PEVNREKIF----------QHRGIIANPNCTTAILAMALWPLHRA--FQAKRVIVATYQA 153
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRH--------VPEI----EQGLTG------- 281
SGAG A E L +E ++ +P I E G T
Sbjct: 154 ASGAGAKAME-ELLTETHRFLHGEAPKAEAFAHPLPFNVIPHIDAFQENGYTREEMKVVW 212
Query: 282 -----FASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLK 324
F + +S T +P +R + VE A VT E + LK
Sbjct: 213 ETHKIFGDDTIRISATAVRVPTLRAHAEAVSVEFARPVTPEAAREVLK 260
>pdb|2QZ9|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2R00|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
pdb|2R00|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
Length = 336
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/353 (20%), Positives = 141/353 (39%), Gaps = 57/353 (16%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTM 119
+Q + + GA+G G ++ +L P + L+ ++R G++ + + +
Sbjct: 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKT------YRFNGKTVRV 55
Query: 120 VAVKDADFSNVD-AVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPH 178
V++ D+S V A+F + + + ++D ++ FR Y P
Sbjct: 56 QNVEEFDWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYD--------YDIPL 107
Query: 179 IAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQA------NLIQYRN 232
+ P++ EA+ + +N ++ANP C + + L P+ A N+ Y++
Sbjct: 108 VVPEVNPEAI--------AEFRNRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQS 159
Query: 233 IIIDAKSGVSG-AGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTG---------- 281
+ K+G+ AG+ AK N Y AE +P+I+Q +
Sbjct: 160 VSGAGKAGIDELAGQTAKLLNGYP--AETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMV 217
Query: 282 ------FASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKL 335
F + V+ T +P+ G ++VE + E + L E + ++L
Sbjct: 218 WETQKIFNDPSIMVNPTCVRVPVFYGHAEAVHVETRAPIDAEQVMDML----EQTDGIEL 273
Query: 336 LEKGVVP-RTHNVRGSNYCLMNVFPDRIPGRAII--ISVIDNLVKGASGQALQ 385
P + + G ++ L+ + I + I V DN+ KGA+ A+Q
Sbjct: 274 FRGADFPTQVRDAGGKDHVLVGRVRNDISHHSGINLWVVADNVRKGAATNAVQ 326
>pdb|2GYY|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|C Chain C, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|D Chain D, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GZ1|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (asadh)
From Streptococcus Pneumoniae Complexed With Nadp
pdb|2GZ1|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (asadh)
From Streptococcus Pneumoniae Complexed With Nadp
pdb|2GZ2|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With 2',5'-Adp
pdb|2GZ2|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With 2',5'-Adp
pdb|2GZ3|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|C Chain C, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|D Chain D, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|3PWK|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWK|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWS|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWS|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PYL|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|C Chain C, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|D Chain D, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYX|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And 2-Aminoterephthalate
pdb|3PYX|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And 2-Aminoterephthalate
pdb|3PZB|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And
D-2,3-Diaminopropionate
pdb|3PZB|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And
D-2,3-Diaminopropionate
pdb|3Q11|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With Nadp
And Aspartyl Beta- Difluorophosphonate
pdb|3Q11|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With Nadp
And Aspartyl Beta- Difluorophosphonate
pdb|3Q1L|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|C Chain C, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|D Chain D, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
Length = 366
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 79/363 (21%), Positives = 148/363 (40%), Gaps = 74/363 (20%)
Query: 66 IGLLGASGYTGAEIVRLL--ANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVK 123
+ ++GA+G GA+++++L + P I+ + + R AG+S+ QD+ T+
Sbjct: 5 VAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL-----KFKDQDI-TIEETT 58
Query: 124 DADFSNVD-AVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLR-DVSEYEEWYGQPHIAP 181
+ F VD A+F + + + + +VD ++ FR DV P + P
Sbjct: 59 ETAFEGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDV---------PLVVP 109
Query: 182 DLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGV 241
++ A+ D N ++A P C + + L P+ Q + II+ V
Sbjct: 110 EVNAHAL---------DAHNG-IIACPNCSTIQMMVALEPVRQKWGLD--RIIVSTYQAV 157
Query: 242 SGAGRGA----------------KEANLYSEIAEGIYSYGVTRH-----RHVPEI----- 275
SGAG GA K +L++EI + S G +H +P+I
Sbjct: 158 SGAGMGAILETQRELREVLNDGVKPCDLHAEI---LPSGGDKKHYPIAFNALPQIDVFTD 214
Query: 276 ------EQGLTG-----FASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLK 324
E +T + VS T +P++ ++Y+E IE++ +
Sbjct: 215 NDYTYEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAAIA 274
Query: 325 ISYEHEEFVKLLEKGVVPRTHNVRGSNYCLM-NVFPDRIPGRAIIISVI-DNLVKGASGQ 382
++ + + P+ N GS + + D + I + V+ DNL+KGA+
Sbjct: 275 -AFPGAVLEDDVAHQIYPQAINAVGSRDTFVGRIRKDLDAEKGIHMWVVSDNLLKGAAWN 333
Query: 383 ALQ 385
++Q
Sbjct: 334 SVQ 336
>pdb|3HSK|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
With Nadp From Candida Albicans
pdb|3HSK|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
With Nadp From Candida Albicans
Length = 381
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 112/285 (39%), Gaps = 27/285 (9%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLPTM---V 120
+ G+LGA+G G + LL+ HP F I + A R AG+ ++ LP +
Sbjct: 21 KAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDI 80
Query: 121 AVKDA----DFSNVDAVFCCLPHGTTQEIIKGLPKS-LKIVDLSADFRL-RDVSEYEEWY 174
V++ +F D VF L +I K ++ L +V + ++R +DV
Sbjct: 81 VVQECKPEGNFLECDVVFSGLDADVAGDIEKSFVEAGLAVVSNAKNYRREKDVPLVVPIV 140
Query: 175 GQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNII 234
HI D+ + V +S+ K ++ C + PL PL++ +
Sbjct: 141 NPEHI--DVVENKVK--QAVSKGGKKPGFIICISNCSTAGLVAPLKPLVE-KFGPIDALT 195
Query: 235 IDAKSGVSGAG--RGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTG-------FASS 285
+SGAG G ++ I I +I G+ S
Sbjct: 196 TTTLQAISGAGFSPGVSGMDILDNIVPYISGEEDKLEWETKKILGGVNAEGTEFVPIPES 255
Query: 286 KVTVSFTPHLMPMIRGMQSTIYVEMA--PGVTIEDLYQQLKISYE 328
++ VS + +P+I G I + A P ++ED+ Q L+ YE
Sbjct: 256 EMKVSAQCNRVPVIDGHTECISLRFANRPAPSVEDVKQCLR-EYE 299
>pdb|1PKF|A Chain A, Crystal Structure Of Epothilone D-Bound Cytochrome
P450epok
Length = 419
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 18/165 (10%)
Query: 157 DLSADFR-LRDVSEYEEWYGQPHIA---PDLQKEAVYGLTEISREDIKNARLVANPGCYP 212
D+SA FR R EEW + P+L YGL + ED R + NP
Sbjct: 57 DVSAVFRDERFAVSREEWESSAEYSSAIPELSDMKKYGLFGLPPEDHARVRKLVNPSFTS 116
Query: 213 TSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHV 272
+I L++A + + + ++DA+S G +E ++ + AEGI ++ V
Sbjct: 117 RAID-----LLRAEIQRTVDQLLDARS-------GQEEFDVVRDYAEGIPMRAISALLKV 164
Query: 273 P-EIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTI 316
P E ++ F S+ + L+P + T+ + G+ +
Sbjct: 165 PAECDEKFRRFGSATAR-ALGVGLVPRVDEETKTLVASVTEGLAL 208
>pdb|1Q5D|A Chain A, Epothilone B-Bound Cytochrome P450epok
pdb|1Q5E|A Chain A, Substrate-Free Cytochrome P450epok
Length = 419
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 18/165 (10%)
Query: 157 DLSADFR-LRDVSEYEEWYGQPHIA---PDLQKEAVYGLTEISREDIKNARLVANPGCYP 212
D+SA FR R EEW + P+L YGL + ED R + NP
Sbjct: 57 DVSAVFRDERFAVSREEWESSAEYSSAIPELSDMKKYGLFGLPPEDHARVRKLVNPSFTS 116
Query: 213 TSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHV 272
+I L++A + + + ++DA+S G +E ++ + AEGI ++ V
Sbjct: 117 RAID-----LLRAEIQRTVDQLLDARS-------GQEEFDVVRDYAEGIPMRAISALLKV 164
Query: 273 P-EIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTI 316
P E ++ F S+ + L+P + T+ + G+ +
Sbjct: 165 PAECDEKFRRFGSATAR-ALGVGLVPRVDEETKTLVASVTEGLAL 208
>pdb|3O3M|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3M|C Chain C, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3N|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3N|C Chain C, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3O|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
(R)-2- Hydroxyisocaproate
Length = 408
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 70 GASGYTGAEIVRLLAN----HPYFGIKLMTADRKAGQSIGSVFPHLIS-----QDLPTMV 120
G S + G E R++ PY G K+ T + GSV+PH + DL M
Sbjct: 248 GKSSFRGEEKYRIMMEGIPCWPYIGYKMKTLAKFGVNMTGSVYPHAWALQYEVNDLDGMA 307
Query: 121 AVKDADFSNVD 131
F+NV+
Sbjct: 308 VAYSTMFNNVN 318
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19
Length = 224
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
+I +LGA+G G+ IV + + ++ +KA +G+ L+ + L + +
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPL----VLTE 57
Query: 125 ADFSNVDAVFCCL--PHGT 141
AD +VDAV L P G+
Sbjct: 58 ADLDSVDAVVDALSVPWGS 76
>pdb|3N6L|A Chain A, The Crystal Strucutre Of Rna-Dependent Rna Polymerase Of
Ev71 Virus
pdb|3N6M|A Chain A, Crystal Structure Of Ev71 Rdrp In Complex With Gtp
pdb|3N6N|A Chain A, Crystal Structure Of Ev71 Rdrp In Complex With Br-Utp
Length = 462
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 341 VPRTHNV-RGSNYCLMNVFPDRIPGRAIIISVIDN------LVKGASGQALQNLNIM 390
+ TH+V R YC++ P G +I S+I+N L+K G L LN++
Sbjct: 269 INHTHHVYRNKTYCVLGGMPSGCSGTSIFNSMINNIIIRALLIKTFKGIDLDELNMV 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,856,924
Number of Sequences: 62578
Number of extensions: 488941
Number of successful extensions: 1205
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1157
Number of HSP's gapped (non-prelim): 24
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)