Query 015441
Match_columns 406
No_of_seqs 195 out of 1536
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:20:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0002 ArgC Acetylglutamate s 100.0 8.6E-96 2E-100 715.0 30.2 344 62-406 1-349 (349)
2 PLN02968 Probable N-acetyl-gam 100.0 4.1E-93 8.9E-98 719.9 35.7 347 60-406 35-381 (381)
3 TIGR01850 argC N-acetyl-gamma- 100.0 3.7E-89 8E-94 685.1 32.1 343 64-406 1-346 (346)
4 PRK00436 argC N-acetyl-gamma-g 100.0 2.4E-84 5.2E-89 649.7 33.7 342 62-406 1-343 (343)
5 PRK11863 N-acetyl-gamma-glutam 100.0 7.6E-79 1.6E-83 599.0 28.8 297 62-399 1-313 (313)
6 TIGR01851 argC_other N-acetyl- 100.0 4.8E-76 1E-80 575.9 27.9 289 64-393 2-310 (310)
7 PRK08040 putative semialdehyde 100.0 5.8E-74 1.3E-78 570.6 28.6 297 62-392 3-332 (336)
8 PRK05671 aspartate-semialdehyd 100.0 6.4E-71 1.4E-75 549.8 29.2 295 62-392 3-333 (336)
9 TIGR00978 asd_EA aspartate-sem 100.0 1.1E-70 2.4E-75 550.8 29.3 312 64-391 1-340 (341)
10 PLN02383 aspartate semialdehyd 100.0 9.7E-71 2.1E-75 550.4 26.8 299 62-391 6-344 (344)
11 PRK08664 aspartate-semialdehyd 100.0 8.6E-69 1.9E-73 538.7 29.9 315 62-393 2-346 (349)
12 KOG4354 N-acetyl-gamma-glutamy 100.0 5.6E-69 1.2E-73 498.2 20.7 331 46-406 2-340 (340)
13 PRK14874 aspartate-semialdehyd 100.0 3.8E-67 8.2E-72 523.8 27.1 296 63-390 1-333 (334)
14 PRK06728 aspartate-semialdehyd 100.0 2.6E-65 5.7E-70 509.0 26.9 300 61-392 3-343 (347)
15 TIGR01296 asd_B aspartate-semi 100.0 7E-65 1.5E-69 508.0 25.3 296 65-391 1-337 (339)
16 PRK06901 aspartate-semialdehyd 100.0 1.6E-62 3.6E-67 480.0 26.1 295 63-391 3-318 (322)
17 PRK06598 aspartate-semialdehyd 100.0 6.8E-62 1.5E-66 487.2 25.9 303 63-391 1-368 (369)
18 COG0136 Asd Aspartate-semialde 100.0 1.2E-58 2.6E-63 453.7 27.5 304 63-391 1-334 (334)
19 TIGR01745 asd_gamma aspartate- 100.0 4E-57 8.6E-62 451.5 25.9 299 64-390 1-365 (366)
20 KOG4777 Aspartate-semialdehyde 100.0 8.2E-41 1.8E-45 312.6 15.5 315 65-391 5-361 (361)
21 PRK15425 gapA glyceraldehyde-3 100.0 1.5E-33 3.2E-38 279.3 25.7 292 62-390 1-329 (331)
22 PRK13535 erythrose 4-phosphate 100.0 2.4E-33 5.2E-38 278.7 24.3 297 63-391 1-333 (336)
23 PRK08955 glyceraldehyde-3-phos 100.0 9.7E-33 2.1E-37 274.3 26.0 296 62-391 1-331 (334)
24 PRK07403 glyceraldehyde-3-phos 100.0 2.6E-32 5.7E-37 270.7 25.9 295 63-391 1-333 (337)
25 TIGR01532 E4PD_g-proteo D-eryt 100.0 1.9E-32 4.1E-37 271.9 24.1 234 65-329 1-267 (325)
26 PLN03096 glyceraldehyde-3-phos 100.0 7.4E-32 1.6E-36 271.7 27.3 293 60-391 57-391 (395)
27 PTZ00023 glyceraldehyde-3-phos 100.0 6.6E-32 1.4E-36 268.0 26.0 293 62-390 1-333 (337)
28 PRK07729 glyceraldehyde-3-phos 100.0 9.1E-32 2E-36 267.1 25.5 294 62-392 1-332 (343)
29 PLN02358 glyceraldehyde-3-phos 100.0 6.3E-31 1.4E-35 261.8 26.4 296 61-390 3-335 (338)
30 PLN02237 glyceraldehyde-3-phos 100.0 5.4E-31 1.2E-35 267.1 25.4 294 61-393 73-411 (442)
31 TIGR01534 GAPDH-I glyceraldehy 100.0 4.4E-31 9.4E-36 261.9 23.7 232 65-328 1-266 (327)
32 PLN02272 glyceraldehyde-3-phos 100.0 4.5E-30 9.8E-35 260.0 26.2 293 63-392 85-416 (421)
33 PF02774 Semialdhyde_dhC: Semi 100.0 6E-32 1.3E-36 248.7 11.2 156 219-377 1-184 (184)
34 PRK04207 glyceraldehyde-3-phos 100.0 1E-29 2.2E-34 254.7 22.6 228 63-326 1-244 (341)
35 PTZ00353 glycosomal glyceralde 100.0 2.2E-28 4.7E-33 243.0 25.8 294 62-394 1-337 (342)
36 PRK08289 glyceraldehyde-3-phos 100.0 1.3E-26 2.8E-31 235.8 26.1 296 61-394 125-472 (477)
37 COG0057 GapA Glyceraldehyde-3- 99.9 1.2E-25 2.5E-30 219.8 22.1 284 63-386 1-326 (335)
38 PTZ00434 cytosolic glyceraldeh 99.9 5.6E-25 1.2E-29 218.6 24.7 294 62-393 2-354 (361)
39 PF01118 Semialdhyde_dh: Semia 99.9 4.4E-26 9.6E-31 195.8 5.6 118 65-201 1-120 (121)
40 TIGR01546 GAPDH-II_archae glyc 99.8 8.9E-20 1.9E-24 181.4 17.6 225 66-326 1-241 (333)
41 PRK08300 acetaldehyde dehydrog 99.8 5.2E-18 1.1E-22 166.5 14.5 219 62-325 3-227 (302)
42 smart00859 Semialdhyde_dh Semi 99.5 5.8E-14 1.3E-18 120.3 9.5 114 65-200 1-121 (122)
43 TIGR03215 ac_ald_DH_ac acetald 99.5 5.4E-13 1.2E-17 130.7 16.2 215 63-325 1-220 (285)
44 PF00044 Gp_dh_N: Glyceraldehy 99.2 1.8E-11 3.8E-16 109.4 7.4 125 64-210 1-151 (151)
45 smart00846 Gp_dh_N Glyceraldeh 99.0 2.3E-09 5.1E-14 95.6 8.7 124 64-210 1-149 (149)
46 PF02800 Gp_dh_C: Glyceraldehy 98.8 1.1E-08 2.5E-13 92.0 6.9 109 215-336 1-120 (157)
47 KOG0657 Glyceraldehyde 3-phosp 98.5 2.1E-07 4.7E-12 89.3 7.6 164 128-327 73-248 (285)
48 PF01113 DapB_N: Dihydrodipico 98.2 1.7E-06 3.7E-11 74.6 5.0 91 64-156 1-95 (124)
49 PRK00048 dihydrodipicolinate r 98.0 2.1E-05 4.4E-10 76.3 7.6 87 63-156 1-88 (257)
50 TIGR01921 DAP-DH diaminopimela 97.9 2.2E-05 4.8E-10 78.4 7.2 87 63-158 3-90 (324)
51 TIGR00036 dapB dihydrodipicoli 97.8 3.9E-05 8.4E-10 74.8 7.1 95 63-159 1-99 (266)
52 PRK13303 L-aspartate dehydroge 97.7 7.5E-05 1.6E-09 72.7 6.4 91 63-159 1-92 (265)
53 COG4569 MhpF Acetaldehyde dehy 97.6 0.00019 4.2E-09 66.7 7.3 132 62-221 3-144 (310)
54 COG0289 DapB Dihydrodipicolina 97.6 0.00028 6E-09 68.2 8.3 97 62-160 1-102 (266)
55 KOG4039 Serine/threonine kinas 97.5 0.00011 2.3E-09 67.2 4.0 77 63-142 18-96 (238)
56 PF13460 NAD_binding_10: NADH( 97.3 0.00017 3.6E-09 65.0 2.8 91 66-162 1-100 (183)
57 PRK13302 putative L-aspartate 97.1 0.00079 1.7E-08 65.8 6.0 90 63-159 6-98 (271)
58 CHL00194 ycf39 Ycf39; Provisio 97.1 0.0011 2.3E-08 65.7 6.5 32 64-96 1-32 (317)
59 PRK13301 putative L-aspartate 97.0 0.001 2.2E-08 64.7 5.7 93 62-162 1-97 (267)
60 PRK13304 L-aspartate dehydroge 97.0 0.00087 1.9E-08 65.3 5.2 90 63-160 1-93 (265)
61 PLN02775 Probable dihydrodipic 96.8 0.0034 7.3E-08 61.8 7.2 94 61-160 9-113 (286)
62 PF01408 GFO_IDH_MocA: Oxidore 96.8 0.00089 1.9E-08 56.3 2.6 85 64-156 1-90 (120)
63 COG1748 LYS9 Saccharopine dehy 96.7 0.0015 3.3E-08 66.9 4.6 96 63-161 1-101 (389)
64 PRK11579 putative oxidoreducta 96.7 0.0036 7.8E-08 63.0 6.7 86 62-156 3-92 (346)
65 PRK06270 homoserine dehydrogen 96.6 0.0037 8E-08 63.1 6.5 94 62-156 1-122 (341)
66 PLN02819 lysine-ketoglutarate 96.6 0.0025 5.4E-08 72.6 5.8 97 61-159 567-679 (1042)
67 PF10727 Rossmann-like: Rossma 96.6 0.0017 3.7E-08 56.5 3.3 94 62-164 9-109 (127)
68 PRK08818 prephenate dehydrogen 96.6 0.0055 1.2E-07 62.6 7.3 80 63-161 4-90 (370)
69 TIGR02130 dapB_plant dihydrodi 96.4 0.0056 1.2E-07 60.0 5.9 91 64-160 1-102 (275)
70 PRK11199 tyrA bifunctional cho 96.4 0.0051 1.1E-07 62.9 5.8 83 57-161 92-177 (374)
71 PLN02427 UDP-apiose/xylose syn 96.4 0.0054 1.2E-07 62.3 5.6 37 59-95 10-46 (386)
72 PRK06349 homoserine dehydrogen 96.3 0.0075 1.6E-07 62.8 6.7 86 63-156 3-101 (426)
73 PF03435 Saccharop_dh: Sacchar 96.3 0.0029 6.3E-08 64.5 3.4 93 66-160 1-99 (386)
74 PRK06444 prephenate dehydrogen 96.3 0.0094 2E-07 55.7 6.5 61 64-161 1-61 (197)
75 PLN02256 arogenate dehydrogena 96.3 0.0082 1.8E-07 59.8 6.3 88 62-160 35-128 (304)
76 COG0287 TyrA Prephenate dehydr 96.2 0.011 2.3E-07 58.3 6.7 94 62-161 2-100 (279)
77 COG2910 Putative NADH-flavin r 96.2 0.0089 1.9E-07 55.2 5.7 71 64-140 1-73 (211)
78 PF03807 F420_oxidored: NADP o 96.2 0.0032 6.9E-08 51.0 2.3 90 65-160 1-95 (96)
79 PF05368 NmrA: NmrA-like famil 96.2 0.003 6.5E-08 59.4 2.5 73 66-140 1-75 (233)
80 PRK14982 acyl-ACP reductase; P 96.2 0.0063 1.4E-07 61.4 4.9 91 64-161 156-248 (340)
81 cd01078 NAD_bind_H4MPT_DH NADP 96.1 0.0076 1.6E-07 55.5 4.8 94 64-161 29-131 (194)
82 PF00056 Ldh_1_N: lactate/mala 96.0 0.0044 9.5E-08 54.7 2.5 75 64-139 1-79 (141)
83 cd01336 MDH_cytoplasmic_cytoso 96.0 0.016 3.5E-07 58.2 6.9 33 63-95 2-40 (325)
84 COG1712 Predicted dinucleotide 96.0 0.011 2.4E-07 56.0 5.3 88 64-158 1-92 (255)
85 PRK07417 arogenate dehydrogena 96.0 0.013 2.8E-07 57.3 5.9 89 64-161 1-93 (279)
86 PRK11559 garR tartronate semia 96.0 0.012 2.5E-07 57.8 5.6 91 62-162 1-99 (296)
87 COG0345 ProC Pyrroline-5-carbo 96.0 0.014 3.1E-07 57.0 6.1 162 63-247 1-174 (266)
88 COG2344 AT-rich DNA-binding pr 96.0 0.0085 1.8E-07 55.3 4.2 98 60-164 81-182 (211)
89 PLN02695 GDP-D-mannose-3',5'-e 95.9 0.016 3.5E-07 58.8 6.7 40 55-95 13-52 (370)
90 COG0673 MviM Predicted dehydro 95.9 0.012 2.5E-07 58.5 5.4 89 62-156 2-95 (342)
91 PRK05472 redox-sensing transcr 95.8 0.018 3.8E-07 54.2 6.0 93 63-164 84-182 (213)
92 PF03447 NAD_binding_3: Homose 95.8 0.0066 1.4E-07 51.3 2.8 82 72-159 2-90 (117)
93 PLN03209 translocon at the inn 95.8 0.013 2.9E-07 62.9 5.6 31 64-95 81-111 (576)
94 TIGR03649 ergot_EASG ergot alk 95.8 0.022 4.8E-07 55.1 6.6 30 65-95 1-30 (285)
95 TIGR01761 thiaz-red thiazoliny 95.8 0.011 2.5E-07 59.7 4.6 86 62-156 2-94 (343)
96 PF03446 NAD_binding_2: NAD bi 95.7 0.0052 1.1E-07 55.2 1.9 87 63-161 1-96 (163)
97 PF02826 2-Hacid_dh_C: D-isome 95.7 0.011 2.5E-07 53.9 4.1 85 64-159 37-127 (178)
98 cd05294 LDH-like_MDH_nadp A la 95.7 0.025 5.5E-07 56.3 6.8 32 64-95 1-33 (309)
99 TIGR02853 spore_dpaA dipicolin 95.7 0.017 3.7E-07 57.0 5.4 91 64-162 152-243 (287)
100 PRK08306 dipicolinate synthase 95.7 0.021 4.5E-07 56.6 6.0 89 64-161 153-243 (296)
101 PRK11880 pyrroline-5-carboxyla 95.6 0.014 3E-07 56.4 4.5 102 62-175 1-107 (267)
102 PRK07502 cyclohexadienyl dehyd 95.6 0.029 6.2E-07 55.5 6.6 91 64-161 7-102 (307)
103 PRK05447 1-deoxy-D-xylulose 5- 95.6 0.016 3.4E-07 59.4 4.8 94 63-156 1-119 (385)
104 PRK08655 prephenate dehydrogen 95.6 0.021 4.6E-07 59.6 5.9 88 64-160 1-93 (437)
105 COG3804 Uncharacterized conser 95.5 0.042 9.2E-07 53.7 7.3 44 62-106 1-46 (350)
106 TIGR01915 npdG NADPH-dependent 95.5 0.017 3.6E-07 54.5 4.6 97 64-164 1-106 (219)
107 KOG1502 Flavonol reductase/cin 95.4 0.025 5.4E-07 56.7 5.4 33 62-95 5-37 (327)
108 cd01065 NAD_bind_Shikimate_DH 95.3 0.034 7.4E-07 48.7 5.6 92 64-161 20-118 (155)
109 PLN02206 UDP-glucuronate decar 95.3 0.063 1.4E-06 56.1 8.4 33 62-95 118-150 (442)
110 PRK14618 NAD(P)H-dependent gly 95.2 0.033 7.2E-07 55.6 5.8 98 63-162 4-107 (328)
111 PRK06392 homoserine dehydrogen 95.2 0.051 1.1E-06 54.7 7.1 93 64-157 1-114 (326)
112 PLN02166 dTDP-glucose 4,6-dehy 95.2 0.062 1.4E-06 56.1 7.8 32 63-95 120-151 (436)
113 PRK12491 pyrroline-5-carboxyla 95.1 0.024 5.1E-07 55.5 4.1 163 62-247 1-177 (272)
114 PRK10206 putative oxidoreducta 95.1 0.038 8.2E-07 55.8 5.7 87 63-156 1-92 (344)
115 PRK07679 pyrroline-5-carboxyla 95.0 0.046 1E-06 53.4 6.0 162 64-247 4-179 (279)
116 PRK08374 homoserine dehydrogen 95.0 0.039 8.4E-07 55.7 5.6 94 62-156 1-119 (336)
117 COG2085 Predicted dinucleotide 95.0 0.046 1E-06 51.5 5.6 88 63-161 1-95 (211)
118 PRK11064 wecC UDP-N-acetyl-D-m 95.0 0.056 1.2E-06 56.1 6.8 94 63-161 3-121 (415)
119 PRK07634 pyrroline-5-carboxyla 95.0 0.031 6.8E-07 53.1 4.6 102 63-175 4-112 (245)
120 PRK08507 prephenate dehydrogen 94.9 0.047 1E-06 53.2 5.8 88 65-161 2-93 (275)
121 PRK06813 homoserine dehydrogen 94.9 0.056 1.2E-06 54.8 6.5 94 62-156 1-119 (346)
122 PRK15469 ghrA bifunctional gly 94.9 0.11 2.3E-06 52.0 8.4 84 64-159 137-226 (312)
123 COG0702 Predicted nucleoside-d 94.8 0.028 6E-07 53.4 3.9 33 64-97 1-33 (275)
124 PF04321 RmlD_sub_bind: RmlD s 94.8 0.027 5.7E-07 55.3 3.8 86 64-166 1-107 (286)
125 TIGR03466 HpnA hopanoid-associ 94.7 0.043 9.3E-07 53.6 5.0 31 65-96 2-32 (328)
126 PF02629 CoA_binding: CoA bind 94.7 0.023 4.9E-07 46.6 2.6 84 62-156 2-90 (96)
127 PRK11150 rfaD ADP-L-glycero-D- 94.7 0.066 1.4E-06 52.3 6.4 33 66-99 2-34 (308)
128 PF02670 DXP_reductoisom: 1-de 94.6 0.058 1.3E-06 47.1 5.0 34 66-99 1-35 (129)
129 PRK15461 NADH-dependent gamma- 94.6 0.052 1.1E-06 53.6 5.3 89 64-162 2-98 (296)
130 TIGR01759 MalateDH-SF1 malate 94.6 0.075 1.6E-06 53.4 6.3 77 62-139 2-89 (323)
131 TIGR00872 gnd_rel 6-phosphoglu 94.5 0.08 1.7E-06 52.3 6.4 90 65-162 2-96 (298)
132 PRK06476 pyrroline-5-carboxyla 94.5 0.04 8.6E-07 53.1 4.2 101 65-175 2-106 (258)
133 PRK05442 malate dehydrogenase; 94.5 0.075 1.6E-06 53.5 6.1 78 61-139 2-90 (326)
134 PTZ00325 malate dehydrogenase; 94.5 0.11 2.4E-06 52.2 7.3 75 61-139 6-86 (321)
135 cd01338 MDH_choloroplast_like 94.5 0.083 1.8E-06 53.0 6.4 76 63-139 2-88 (322)
136 cd00704 MDH Malate dehydrogena 94.4 0.084 1.8E-06 53.0 6.3 26 64-89 1-26 (323)
137 PF01488 Shikimate_DH: Shikima 94.4 0.027 5.8E-07 49.1 2.4 92 63-160 12-110 (135)
138 PRK08229 2-dehydropantoate 2-r 94.3 0.13 2.9E-06 51.3 7.5 97 62-161 1-109 (341)
139 PRK14619 NAD(P)H-dependent gly 94.3 0.1 2.2E-06 51.7 6.5 74 64-160 5-83 (308)
140 PRK08125 bifunctional UDP-gluc 94.2 0.058 1.3E-06 59.1 5.1 35 61-95 313-347 (660)
141 PRK05086 malate dehydrogenase; 94.2 0.12 2.6E-06 51.6 6.8 71 64-139 1-79 (312)
142 PLN02712 arogenate dehydrogena 94.2 0.068 1.5E-06 58.8 5.5 89 62-161 368-462 (667)
143 PLN02712 arogenate dehydrogena 94.2 0.11 2.4E-06 57.2 7.0 88 62-161 51-145 (667)
144 PRK11908 NAD-dependent epimera 94.1 0.064 1.4E-06 53.5 4.8 33 63-95 1-33 (347)
145 TIGR03026 NDP-sugDHase nucleot 94.1 0.11 2.5E-06 53.5 6.8 95 64-160 1-121 (411)
146 PRK08618 ornithine cyclodeamin 94.1 0.077 1.7E-06 53.2 5.4 95 63-161 127-223 (325)
147 PRK07574 formate dehydrogenase 94.1 0.13 2.8E-06 53.0 7.0 86 64-159 193-284 (385)
148 KOG1203 Predicted dehydrogenas 94.1 0.16 3.4E-06 52.5 7.6 37 59-96 75-111 (411)
149 PLN00141 Tic62-NAD(P)-related 94.1 0.073 1.6E-06 50.6 5.0 32 63-95 17-48 (251)
150 cd01080 NAD_bind_m-THF_DH_Cycl 94.1 0.14 3E-06 46.6 6.5 73 64-162 45-119 (168)
151 PRK12320 hypothetical protein; 94.1 0.12 2.7E-06 56.9 7.2 90 64-161 1-103 (699)
152 PRK06046 alanine dehydrogenase 94.1 0.066 1.4E-06 53.7 4.7 96 63-161 129-225 (326)
153 PRK06545 prephenate dehydrogen 94.1 0.11 2.3E-06 52.9 6.3 91 65-161 2-97 (359)
154 PLN02662 cinnamyl-alcohol dehy 94.0 0.077 1.7E-06 52.0 5.0 31 64-95 5-35 (322)
155 cd01337 MDH_glyoxysomal_mitoch 93.9 0.14 3.1E-06 51.1 6.7 72 64-139 1-78 (310)
156 PRK15182 Vi polysaccharide bio 93.9 0.11 2.3E-06 54.2 6.1 95 64-162 7-123 (425)
157 PLN02657 3,8-divinyl protochlo 93.8 0.14 3.1E-06 52.4 6.7 33 62-95 59-91 (390)
158 COG0039 Mdh Malate/lactate deh 93.8 0.18 3.9E-06 50.4 7.1 74 64-138 1-78 (313)
159 PLN02986 cinnamyl-alcohol dehy 93.7 0.1 2.2E-06 51.4 5.3 32 64-96 6-37 (322)
160 PLN00198 anthocyanidin reducta 93.7 0.095 2.1E-06 52.0 5.0 33 62-95 8-40 (338)
161 COG0451 WcaG Nucleoside-diphos 93.6 0.13 2.9E-06 49.7 5.9 31 65-96 2-32 (314)
162 cd05213 NAD_bind_Glutamyl_tRNA 93.6 0.11 2.4E-06 51.7 5.4 92 63-161 178-275 (311)
163 COG0460 ThrA Homoserine dehydr 93.6 0.21 4.6E-06 50.3 7.2 91 62-156 2-110 (333)
164 PRK08605 D-lactate dehydrogena 93.6 0.21 4.6E-06 50.2 7.4 86 64-161 147-238 (332)
165 PRK00094 gpsA NAD(P)H-dependen 93.6 0.12 2.5E-06 51.1 5.4 98 63-162 1-108 (325)
166 PRK06223 malate dehydrogenase; 93.5 0.1 2.2E-06 51.6 4.9 74 63-138 2-79 (307)
167 TIGR00518 alaDH alanine dehydr 93.5 0.13 2.8E-06 52.6 5.8 94 64-161 168-269 (370)
168 TIGR01505 tartro_sem_red 2-hyd 93.5 0.094 2E-06 51.4 4.6 87 65-161 1-95 (291)
169 PLN00106 malate dehydrogenase 93.5 0.23 5.1E-06 49.9 7.5 75 64-139 19-96 (323)
170 PF01073 3Beta_HSD: 3-beta hyd 93.5 0.095 2.1E-06 51.4 4.6 29 67-95 1-30 (280)
171 PRK09599 6-phosphogluconate de 93.5 0.17 3.6E-06 50.1 6.3 85 65-161 2-96 (301)
172 PRK07819 3-hydroxybutyryl-CoA 93.4 0.3 6.6E-06 48.0 8.0 102 63-166 5-128 (286)
173 PRK07680 late competence prote 93.4 0.091 2E-06 51.1 4.3 100 65-175 2-109 (273)
174 PRK13243 glyoxylate reductase; 93.4 0.2 4.3E-06 50.5 6.8 85 64-160 151-241 (333)
175 PRK06932 glycerate dehydrogena 93.3 0.25 5.3E-06 49.4 7.3 79 64-158 148-232 (314)
176 PRK12480 D-lactate dehydrogena 93.3 0.25 5.4E-06 49.8 7.3 82 64-159 147-234 (330)
177 TIGR03589 PseB UDP-N-acetylglu 93.3 0.08 1.7E-06 52.6 3.7 32 64-95 5-37 (324)
178 PLN02696 1-deoxy-D-xylulose-5- 93.2 0.25 5.4E-06 51.7 7.3 41 60-100 54-95 (454)
179 PLN02778 3,5-epimerase/4-reduc 93.2 0.1 2.3E-06 51.3 4.3 33 59-92 5-37 (298)
180 COG5322 Predicted dehydrogenas 93.1 0.22 4.7E-06 48.7 6.2 93 64-160 168-262 (351)
181 PRK12490 6-phosphogluconate de 93.1 0.21 4.5E-06 49.4 6.3 85 65-161 2-96 (299)
182 PRK06436 glycerate dehydrogena 93.1 0.38 8.3E-06 47.9 8.2 82 64-160 123-210 (303)
183 TIGR00243 Dxr 1-deoxy-D-xylulo 93.0 0.13 2.8E-06 52.7 4.8 38 63-100 1-39 (389)
184 TIGR01777 yfcH conserved hypot 93.0 0.22 4.7E-06 47.7 6.2 30 66-96 1-30 (292)
185 PRK06928 pyrroline-5-carboxyla 93.0 0.13 2.8E-06 50.3 4.7 104 63-175 1-111 (277)
186 PLN03139 formate dehydrogenase 93.0 0.26 5.6E-06 50.8 7.1 86 64-159 200-291 (386)
187 PLN02214 cinnamoyl-CoA reducta 92.9 0.19 4.1E-06 50.4 5.9 32 63-95 10-41 (342)
188 TIGR02197 heptose_epim ADP-L-g 92.8 0.12 2.7E-06 50.2 4.3 30 66-95 1-30 (314)
189 TIGR01772 MDH_euk_gproteo mala 92.8 0.22 4.7E-06 49.8 6.0 71 65-139 1-77 (312)
190 PLN02928 oxidoreductase family 92.7 0.39 8.4E-06 48.7 7.7 90 64-159 160-262 (347)
191 PRK06249 2-dehydropantoate 2-r 92.6 0.66 1.4E-05 46.0 9.2 93 62-158 4-105 (313)
192 PLN02688 pyrroline-5-carboxyla 92.5 0.24 5.2E-06 47.7 5.8 102 64-176 1-109 (266)
193 PRK07201 short chain dehydroge 92.5 0.18 3.9E-06 54.7 5.5 33 64-96 1-34 (657)
194 PLN02989 cinnamyl-alcohol dehy 92.3 0.21 4.6E-06 49.1 5.2 33 62-95 4-36 (325)
195 TIGR01214 rmlD dTDP-4-dehydror 92.3 0.16 3.5E-06 48.8 4.3 30 65-95 1-30 (287)
196 TIGR02371 ala_DH_arch alanine 92.2 0.25 5.4E-06 49.6 5.6 96 63-161 128-224 (325)
197 PRK15059 tartronate semialdehy 92.2 0.28 6E-06 48.5 5.8 86 65-161 2-95 (292)
198 PRK15438 erythronate-4-phospha 92.2 0.47 1E-05 48.7 7.7 81 64-159 117-207 (378)
199 PRK05678 succinyl-CoA syntheta 92.2 0.35 7.5E-06 48.0 6.5 94 61-164 6-102 (291)
200 cd05292 LDH_2 A subgroup of L- 92.2 0.25 5.5E-06 49.1 5.6 73 64-140 1-78 (308)
201 KOG2711 Glycerol-3-phosphate d 92.1 0.56 1.2E-05 47.3 7.7 101 63-164 21-144 (372)
202 PRK15181 Vi polysaccharide bio 92.0 0.2 4.4E-06 50.2 4.7 31 64-95 16-46 (348)
203 PLN00112 malate dehydrogenase 92.0 0.21 4.6E-06 52.3 4.9 78 61-139 98-186 (444)
204 TIGR01757 Malate-DH_plant mala 92.0 0.18 4E-06 51.9 4.4 74 63-139 44-130 (387)
205 PLN02650 dihydroflavonol-4-red 91.9 0.21 4.6E-06 49.9 4.7 31 64-95 6-36 (351)
206 TIGR01746 Thioester-redct thio 91.9 0.2 4.4E-06 49.3 4.5 31 65-95 1-32 (367)
207 PLN00203 glutamyl-tRNA reducta 91.9 0.21 4.6E-06 53.3 5.0 94 64-161 267-371 (519)
208 PRK08410 2-hydroxyacid dehydro 91.9 0.62 1.3E-05 46.5 8.0 79 64-157 146-230 (311)
209 PRK06487 glycerate dehydrogena 91.9 0.54 1.2E-05 47.0 7.6 78 64-158 149-232 (317)
210 PLN02896 cinnamyl-alcohol dehy 91.9 0.18 3.9E-06 50.5 4.2 31 64-95 11-41 (353)
211 TIGR02992 ectoine_eutC ectoine 91.7 0.21 4.5E-06 50.1 4.4 95 63-161 129-226 (326)
212 PF13380 CoA_binding_2: CoA bi 91.7 0.23 5.1E-06 42.2 4.1 82 65-160 2-88 (116)
213 PLN02602 lactate dehydrogenase 91.7 0.3 6.4E-06 49.7 5.5 73 64-139 38-115 (350)
214 cd05293 LDH_1 A subgroup of L- 91.6 0.27 5.9E-06 49.1 5.1 73 64-139 4-81 (312)
215 TIGR01758 MDH_euk_cyt malate d 91.6 0.39 8.5E-06 48.3 6.2 31 65-95 1-37 (324)
216 TIGR01327 PGDH D-3-phosphoglyc 91.5 0.43 9.4E-06 51.1 6.8 85 64-159 139-229 (525)
217 PRK00257 erythronate-4-phospha 91.5 0.56 1.2E-05 48.2 7.3 81 64-159 117-207 (381)
218 cd05290 LDH_3 A subgroup of L- 91.5 0.26 5.6E-06 49.2 4.8 73 65-139 1-78 (307)
219 PRK08293 3-hydroxybutyryl-CoA 91.3 0.3 6.4E-06 47.9 5.0 99 64-164 4-125 (287)
220 PRK15409 bifunctional glyoxyla 91.2 0.55 1.2E-05 47.2 6.8 83 64-158 146-235 (323)
221 PF01210 NAD_Gly3P_dh_N: NAD-d 91.1 0.23 5.1E-06 44.2 3.7 95 65-162 1-106 (157)
222 PRK13581 D-3-phosphoglycerate 91.1 0.48 1E-05 50.7 6.6 84 64-159 141-230 (526)
223 PLN02686 cinnamoyl-CoA reducta 91.1 0.18 3.9E-06 51.2 3.2 36 59-95 49-84 (367)
224 PTZ00431 pyrroline carboxylate 91.0 0.42 9.1E-06 46.2 5.6 93 64-175 4-103 (260)
225 PRK14175 bifunctional 5,10-met 91.0 0.72 1.6E-05 45.6 7.2 72 64-161 159-232 (286)
226 COG1091 RfbD dTDP-4-dehydrorha 90.9 0.28 6.1E-06 48.3 4.3 31 65-97 2-32 (281)
227 PRK00066 ldh L-lactate dehydro 90.9 0.45 9.7E-06 47.6 5.8 72 64-139 7-83 (315)
228 PTZ00117 malate dehydrogenase; 90.8 0.51 1.1E-05 47.2 6.2 75 63-139 5-83 (319)
229 PRK00045 hemA glutamyl-tRNA re 90.8 0.38 8.3E-06 50.0 5.4 91 64-161 183-282 (423)
230 PRK14194 bifunctional 5,10-met 90.6 1.8 3.8E-05 43.2 9.7 73 64-162 160-234 (301)
231 cd00757 ThiF_MoeB_HesA_family 90.6 0.35 7.5E-06 45.9 4.6 93 64-159 22-143 (228)
232 PRK06141 ornithine cyclodeamin 90.6 0.3 6.6E-06 48.7 4.3 93 63-162 125-221 (314)
233 TIGR00465 ilvC ketol-acid redu 90.4 0.67 1.4E-05 46.4 6.6 166 64-250 4-194 (314)
234 TIGR01035 hemA glutamyl-tRNA r 90.3 0.32 6.9E-06 50.5 4.3 91 64-161 181-279 (417)
235 COG0111 SerA Phosphoglycerate 90.3 0.89 1.9E-05 45.8 7.4 82 64-156 143-230 (324)
236 PRK05865 hypothetical protein; 90.2 0.7 1.5E-05 52.3 7.2 31 64-95 1-31 (854)
237 PRK08291 ectoine utilization p 90.2 0.41 8.8E-06 48.1 4.9 95 64-162 133-230 (330)
238 cd01483 E1_enzyme_family Super 90.2 0.53 1.1E-05 41.0 5.0 93 65-160 1-122 (143)
239 PRK15057 UDP-glucose 6-dehydro 90.2 0.77 1.7E-05 47.3 7.0 29 64-95 1-29 (388)
240 PF01370 Epimerase: NAD depend 90.0 0.41 9E-06 44.2 4.5 30 66-96 1-30 (236)
241 PF01262 AlaDh_PNT_C: Alanine 90.0 0.19 4.2E-06 45.3 2.2 96 64-162 21-142 (168)
242 PRK14188 bifunctional 5,10-met 90.0 0.8 1.7E-05 45.5 6.6 73 64-162 159-233 (296)
243 PRK05808 3-hydroxybutyryl-CoA 89.8 0.36 7.7E-06 47.1 4.0 100 64-165 4-124 (282)
244 cd05191 NAD_bind_amino_acid_DH 89.7 2.6 5.6E-05 33.5 8.3 22 64-86 24-45 (86)
245 PRK14806 bifunctional cyclohex 89.7 0.75 1.6E-05 51.0 6.9 91 64-161 4-99 (735)
246 PLN02353 probable UDP-glucose 89.7 0.68 1.5E-05 49.0 6.2 32 63-95 1-33 (473)
247 PRK09260 3-hydroxybutyryl-CoA 89.7 0.38 8.2E-06 47.1 4.1 29 64-94 2-30 (288)
248 PRK09009 C factor cell-cell si 89.6 0.63 1.4E-05 43.2 5.4 29 65-93 2-31 (235)
249 PTZ00142 6-phosphogluconate de 89.5 0.73 1.6E-05 48.7 6.3 97 63-162 1-104 (470)
250 PRK12439 NAD(P)H-dependent gly 89.5 0.56 1.2E-05 47.3 5.2 99 61-162 5-114 (341)
251 PRK06179 short chain dehydroge 89.4 0.73 1.6E-05 43.9 5.8 31 64-95 5-35 (270)
252 PLN00016 RNA-binding protein; 89.4 0.41 8.8E-06 48.6 4.2 36 60-96 49-88 (378)
253 PLN02572 UDP-sulfoquinovose sy 89.3 0.57 1.2E-05 49.0 5.3 34 61-95 45-78 (442)
254 PRK08219 short chain dehydroge 89.3 0.49 1.1E-05 43.4 4.3 31 63-95 3-33 (227)
255 TIGR02356 adenyl_thiF thiazole 89.3 0.36 7.9E-06 45.0 3.4 93 64-159 22-143 (202)
256 PRK06522 2-dehydropantoate 2-r 89.3 1.2 2.5E-05 43.4 7.2 96 64-161 1-102 (304)
257 PRK14192 bifunctional 5,10-met 89.2 1.1 2.3E-05 44.3 6.9 71 64-160 160-232 (283)
258 PRK00258 aroE shikimate 5-dehy 89.2 0.78 1.7E-05 44.9 5.9 90 64-159 124-221 (278)
259 PRK10217 dTDP-glucose 4,6-dehy 89.2 0.58 1.3E-05 46.6 5.1 25 63-87 1-25 (355)
260 PLN02350 phosphogluconate dehy 89.2 0.89 1.9E-05 48.4 6.6 95 62-162 5-110 (493)
261 cd05212 NAD_bind_m-THF_DH_Cycl 89.1 1.4 3E-05 38.9 6.8 72 64-161 29-102 (140)
262 PRK09987 dTDP-4-dehydrorhamnos 89.1 0.44 9.6E-06 46.7 4.1 29 64-94 1-29 (299)
263 PLN02260 probable rhamnose bio 89.1 0.45 9.8E-06 52.1 4.6 33 63-95 6-39 (668)
264 TIGR00507 aroE shikimate 5-deh 89.1 0.76 1.7E-05 44.7 5.7 91 64-160 118-215 (270)
265 cd01076 NAD_bind_1_Glu_DH NAD( 89.0 1.1 2.4E-05 42.7 6.6 34 62-97 30-63 (227)
266 PF00899 ThiF: ThiF family; I 88.9 0.29 6.3E-06 42.3 2.3 93 64-159 3-124 (135)
267 TIGR01763 MalateDH_bact malate 88.9 0.64 1.4E-05 46.2 5.1 75 64-139 2-79 (305)
268 cd01484 E1-2_like Ubiquitin ac 88.8 0.9 1.9E-05 43.6 5.8 94 65-159 1-123 (234)
269 PRK06153 hypothetical protein; 88.7 0.51 1.1E-05 48.6 4.2 100 64-164 177-303 (393)
270 PRK13940 glutamyl-tRNA reducta 88.6 0.5 1.1E-05 49.2 4.2 92 64-161 182-275 (414)
271 PLN02545 3-hydroxybutyryl-CoA 88.6 0.42 9.1E-06 46.9 3.5 30 64-95 5-34 (295)
272 PLN02700 homoserine dehydrogen 88.5 0.58 1.3E-05 48.0 4.6 34 63-97 3-44 (377)
273 PRK06130 3-hydroxybutyryl-CoA 88.5 0.85 1.9E-05 45.0 5.7 31 63-95 4-34 (311)
274 PTZ00082 L-lactate dehydrogena 88.4 0.94 2E-05 45.4 5.9 74 63-139 6-84 (321)
275 TIGR01181 dTDP_gluc_dehyt dTDP 88.4 0.48 1E-05 45.7 3.8 31 65-95 1-32 (317)
276 COG0240 GpsA Glycerol-3-phosph 88.4 0.97 2.1E-05 45.5 5.9 98 63-162 1-108 (329)
277 PRK09436 thrA bifunctional asp 88.2 0.74 1.6E-05 52.0 5.6 94 61-156 463-575 (819)
278 PF02882 THF_DHG_CYH_C: Tetrah 88.1 1 2.2E-05 40.7 5.4 73 64-162 37-111 (160)
279 PRK11790 D-3-phosphoglycerate 88.1 1.6 3.4E-05 45.4 7.5 82 64-159 152-239 (409)
280 KOG2741 Dimeric dihydrodiol de 88.0 1.2 2.5E-05 45.1 6.2 93 60-156 3-100 (351)
281 COG0373 HemA Glutamyl-tRNA red 88.0 0.85 1.8E-05 47.3 5.4 93 62-161 177-276 (414)
282 PRK06407 ornithine cyclodeamin 87.9 0.62 1.3E-05 46.3 4.3 97 63-161 117-214 (301)
283 COG0743 Dxr 1-deoxy-D-xylulose 87.9 0.68 1.5E-05 47.1 4.5 37 63-99 1-38 (385)
284 COG1052 LdhA Lactate dehydroge 87.9 1.3 2.8E-05 44.6 6.6 81 64-156 147-233 (324)
285 TIGR01019 sucCoAalpha succinyl 87.9 2 4.4E-05 42.5 7.8 92 62-163 5-99 (286)
286 PF02423 OCD_Mu_crystall: Orni 87.8 0.36 7.9E-06 48.1 2.5 95 63-161 128-226 (313)
287 PTZ00345 glycerol-3-phosphate 87.7 2.6 5.7E-05 43.1 8.7 99 64-163 12-133 (365)
288 PRK08264 short chain dehydroge 87.6 1 2.2E-05 41.8 5.4 32 64-95 7-38 (238)
289 PRK12829 short chain dehydroge 87.5 0.52 1.1E-05 44.4 3.4 31 64-95 12-42 (264)
290 COG3268 Uncharacterized conser 87.5 0.5 1.1E-05 47.5 3.2 95 61-161 4-106 (382)
291 cd05211 NAD_bind_Glu_Leu_Phe_V 87.4 2.2 4.8E-05 40.4 7.5 33 63-97 23-55 (217)
292 PRK14189 bifunctional 5,10-met 87.4 1.1 2.4E-05 44.3 5.6 73 64-162 159-233 (285)
293 PRK07531 bifunctional 3-hydrox 87.3 1.3 2.9E-05 47.0 6.6 31 62-94 3-33 (495)
294 PRK14179 bifunctional 5,10-met 87.3 0.93 2E-05 44.8 5.0 73 64-162 159-233 (284)
295 PRK05479 ketol-acid reductoiso 87.2 1.5 3.2E-05 44.3 6.5 91 64-165 18-113 (330)
296 PRK12825 fabG 3-ketoacyl-(acyl 87.2 0.91 2E-05 42.0 4.8 32 63-95 6-37 (249)
297 TIGR00873 gnd 6-phosphoglucona 87.2 1.2 2.5E-05 47.2 6.0 94 65-162 1-101 (467)
298 PRK10084 dTDP-glucose 4,6 dehy 87.1 0.73 1.6E-05 45.8 4.3 29 64-92 1-29 (352)
299 PRK07340 ornithine cyclodeamin 86.6 0.94 2E-05 45.0 4.7 91 63-161 125-219 (304)
300 PRK05866 short chain dehydroge 86.6 0.93 2E-05 44.3 4.6 31 64-95 41-71 (293)
301 cd05291 HicDH_like L-2-hydroxy 86.5 1.1 2.4E-05 44.5 5.1 72 65-139 2-78 (306)
302 cd01485 E1-1_like Ubiquitin ac 86.4 0.87 1.9E-05 42.4 4.1 30 64-94 20-49 (198)
303 PLN02306 hydroxypyruvate reduc 86.3 2.2 4.8E-05 44.0 7.3 93 64-159 166-272 (386)
304 PRK05690 molybdopterin biosynt 86.1 1.1 2.4E-05 43.2 4.7 92 64-158 33-153 (245)
305 PRK06823 ornithine cyclodeamin 86.0 1.3 2.8E-05 44.4 5.3 92 63-161 128-224 (315)
306 PLN02240 UDP-glucose 4-epimera 85.7 1.2 2.5E-05 44.3 4.9 31 64-95 6-36 (352)
307 COG1090 Predicted nucleoside-d 85.5 1.7 3.7E-05 42.8 5.7 29 66-95 1-29 (297)
308 PRK09466 metL bifunctional asp 85.5 0.78 1.7E-05 51.7 3.9 94 61-156 456-569 (810)
309 PRK14193 bifunctional 5,10-met 85.5 1.6 3.5E-05 43.1 5.6 74 64-162 159-235 (284)
310 PRK06718 precorrin-2 dehydroge 85.5 1.9 4.1E-05 40.3 5.9 83 64-153 11-95 (202)
311 PRK10675 UDP-galactose-4-epime 85.3 1.1 2.3E-05 44.2 4.4 31 64-95 1-31 (338)
312 COG1893 ApbA Ketopantoate redu 85.0 2.8 6E-05 41.8 7.1 81 64-149 1-87 (307)
313 TIGR00561 pntA NAD(P) transhyd 84.7 1.1 2.3E-05 48.0 4.2 95 64-161 165-286 (511)
314 PRK12921 2-dehydropantoate 2-r 84.7 3 6.4E-05 40.7 7.2 92 64-160 1-103 (305)
315 PLN02583 cinnamoyl-CoA reducta 84.6 1.5 3.3E-05 42.8 5.1 31 64-95 7-37 (297)
316 TIGR03376 glycerol3P_DH glycer 84.6 2.6 5.6E-05 42.8 6.8 98 65-163 1-120 (342)
317 PLN02653 GDP-mannose 4,6-dehyd 84.6 1.2 2.7E-05 44.1 4.5 31 64-95 7-37 (340)
318 PLN02858 fructose-bisphosphate 84.6 1.4 3E-05 52.5 5.5 89 62-161 323-420 (1378)
319 PRK07806 short chain dehydroge 84.5 1.3 2.8E-05 41.4 4.3 31 64-95 7-37 (248)
320 cd01492 Aos1_SUMO Ubiquitin ac 84.4 1.4 3.1E-05 40.9 4.5 93 64-157 22-140 (197)
321 PRK05693 short chain dehydroge 84.4 0.99 2.1E-05 43.2 3.6 31 64-95 2-32 (274)
322 PRK07530 3-hydroxybutyryl-CoA 84.3 2.1 4.5E-05 41.9 5.9 98 64-164 5-124 (292)
323 TIGR01692 HIBADH 3-hydroxyisob 84.1 1.1 2.5E-05 43.8 3.9 84 68-161 1-92 (288)
324 TIGR01472 gmd GDP-mannose 4,6- 84.0 1.3 2.8E-05 44.0 4.3 30 65-95 2-31 (343)
325 COG1004 Ugd Predicted UDP-gluc 83.9 1.1 2.5E-05 46.0 3.9 30 64-95 1-30 (414)
326 TIGR00715 precor6x_red precorr 83.9 1.9 4.1E-05 42.0 5.3 30 64-95 1-30 (256)
327 PRK06129 3-hydroxyacyl-CoA deh 83.9 3.4 7.4E-05 40.9 7.3 30 64-95 3-32 (308)
328 PRK06953 short chain dehydroge 83.8 1.4 3.1E-05 40.7 4.3 32 63-95 1-32 (222)
329 PLN02260 probable rhamnose bio 83.5 1.2 2.6E-05 48.8 4.2 26 61-86 378-403 (668)
330 PRK06182 short chain dehydroge 83.5 0.93 2E-05 43.4 3.0 31 64-95 4-34 (273)
331 PRK12743 oxidoreductase; Provi 83.4 1.4 3E-05 41.7 4.1 32 63-95 2-33 (256)
332 cd00650 LDH_MDH_like NAD-depen 83.3 1.8 3.9E-05 41.9 4.9 30 66-95 1-33 (263)
333 PRK07023 short chain dehydroge 83.3 1.7 3.7E-05 40.6 4.6 32 63-95 1-32 (243)
334 PTZ00075 Adenosylhomocysteinas 83.2 3.7 7.9E-05 43.5 7.4 85 64-159 255-341 (476)
335 COG2084 MmsB 3-hydroxyisobutyr 83.2 2.5 5.3E-05 41.9 5.8 89 64-161 1-97 (286)
336 TIGR02717 AcCoA-syn-alpha acet 83.0 3.1 6.8E-05 43.6 6.9 85 64-163 8-100 (447)
337 KOG1430 C-3 sterol dehydrogena 83.0 1.8 3.8E-05 44.3 4.8 34 61-94 2-36 (361)
338 KOG0069 Glyoxylate/hydroxypyru 82.9 3.5 7.7E-05 41.7 6.9 83 64-157 163-251 (336)
339 PRK13403 ketol-acid reductoiso 82.7 3.6 7.8E-05 41.5 6.8 89 64-164 17-110 (335)
340 PRK07326 short chain dehydroge 82.5 1.8 4E-05 40.0 4.4 31 64-95 7-37 (237)
341 PRK07877 hypothetical protein; 82.4 1.5 3.3E-05 48.7 4.5 95 63-161 107-230 (722)
342 PRK06035 3-hydroxyacyl-CoA deh 82.4 2.7 5.8E-05 41.2 5.8 98 64-164 4-126 (291)
343 TIGR02622 CDP_4_6_dhtase CDP-g 82.3 2.1 4.5E-05 42.7 5.1 31 64-95 5-35 (349)
344 PRK05653 fabG 3-ketoacyl-(acyl 82.2 2.1 4.6E-05 39.5 4.7 31 64-95 6-36 (246)
345 PRK06719 precorrin-2 dehydroge 82.1 3.9 8.5E-05 36.6 6.3 74 64-146 14-87 (157)
346 PRK09291 short chain dehydroge 82.1 2.2 4.8E-05 40.0 4.9 32 63-95 2-33 (257)
347 PRK06947 glucose-1-dehydrogena 82.0 2.1 4.6E-05 40.0 4.8 33 62-95 1-33 (248)
348 PRK08328 hypothetical protein; 81.9 2.3 5E-05 40.5 5.0 91 64-157 28-148 (231)
349 PF00670 AdoHcyase_NAD: S-aden 81.8 2.2 4.7E-05 38.8 4.4 87 64-162 24-112 (162)
350 COG2423 Predicted ornithine cy 81.7 2 4.4E-05 43.3 4.7 97 63-163 130-229 (330)
351 PRK12475 thiamine/molybdopteri 81.7 2.1 4.7E-05 43.2 4.9 91 64-157 25-146 (338)
352 PRK08017 oxidoreductase; Provi 81.5 2.4 5.3E-05 39.7 5.0 31 64-95 3-33 (256)
353 PRK05565 fabG 3-ketoacyl-(acyl 81.3 2.3 5.1E-05 39.4 4.7 31 63-94 5-35 (247)
354 PRK07589 ornithine cyclodeamin 81.3 1.9 4.2E-05 43.8 4.4 94 63-160 129-226 (346)
355 PF02254 TrkA_N: TrkA-N domain 81.2 1.5 3.3E-05 36.3 3.1 74 66-142 1-75 (116)
356 PF07993 NAD_binding_4: Male s 81.2 1.5 3.3E-05 41.7 3.5 29 68-96 1-30 (249)
357 PRK07856 short chain dehydroge 81.2 2.1 4.6E-05 40.3 4.4 31 64-95 7-37 (252)
358 PRK06199 ornithine cyclodeamin 81.1 2 4.4E-05 44.1 4.5 90 63-156 155-256 (379)
359 KOG1494 NAD-dependent malate d 80.8 2.2 4.9E-05 42.1 4.4 37 61-97 26-62 (345)
360 PRK06398 aldose dehydrogenase; 80.8 2.4 5.1E-05 40.3 4.6 30 64-94 7-36 (258)
361 cd05295 MDH_like Malate dehydr 80.7 1.8 3.9E-05 45.5 4.1 76 61-139 121-209 (452)
362 cd01487 E1_ThiF_like E1_ThiF_l 80.7 2.7 5.9E-05 38.2 4.8 91 65-158 1-120 (174)
363 PRK14173 bifunctional 5,10-met 80.6 3.4 7.3E-05 41.0 5.7 73 64-162 156-230 (287)
364 TIGR02355 moeB molybdopterin s 80.5 2.6 5.6E-05 40.5 4.8 92 64-158 25-145 (240)
365 cd08293 PTGR2 Prostaglandin re 80.4 2.8 6E-05 41.4 5.1 96 64-159 156-254 (345)
366 PRK14174 bifunctional 5,10-met 80.3 3.3 7.1E-05 41.2 5.5 74 64-162 160-238 (295)
367 PRK05476 S-adenosyl-L-homocyst 80.0 5 0.00011 41.9 7.0 87 64-162 213-301 (425)
368 PRK08762 molybdopterin biosynt 79.4 2.7 5.9E-05 42.9 4.8 93 63-158 135-256 (376)
369 PRK09135 pteridine reductase; 79.2 3.4 7.5E-05 38.3 5.1 31 64-95 7-37 (249)
370 PRK07231 fabG 3-ketoacyl-(acyl 79.2 3.1 6.7E-05 38.7 4.8 31 64-95 6-36 (251)
371 cd00300 LDH_like L-lactate deh 79.1 2.5 5.4E-05 41.9 4.3 70 66-139 1-76 (300)
372 PRK14185 bifunctional 5,10-met 78.9 4.2 9.1E-05 40.4 5.7 74 64-162 158-236 (293)
373 TIGR01179 galE UDP-glucose-4-e 78.8 2.5 5.3E-05 40.9 4.1 29 65-94 1-29 (328)
374 PRK14168 bifunctional 5,10-met 78.7 4.5 9.8E-05 40.2 5.9 74 64-162 162-240 (297)
375 PRK12367 short chain dehydroge 78.7 4.5 9.7E-05 38.6 5.8 31 64-95 15-45 (245)
376 PRK10538 malonic semialdehyde 78.6 3.2 7E-05 39.0 4.8 31 64-95 1-31 (248)
377 PRK10792 bifunctional 5,10-met 78.5 7.1 0.00015 38.6 7.2 72 64-161 160-233 (285)
378 PRK05557 fabG 3-ketoacyl-(acyl 78.5 3.5 7.6E-05 38.1 4.9 32 64-96 6-37 (248)
379 PRK06924 short chain dehydroge 78.5 3.4 7.3E-05 38.7 4.9 31 64-95 2-32 (251)
380 PRK15116 sulfur acceptor prote 78.5 3.9 8.3E-05 40.1 5.3 95 64-161 31-155 (268)
381 PRK12826 3-ketoacyl-(acyl-carr 78.5 3.3 7.2E-05 38.4 4.8 31 64-95 7-37 (251)
382 PRK12745 3-ketoacyl-(acyl-carr 78.4 3.5 7.6E-05 38.6 5.0 31 64-95 3-33 (256)
383 KOG2733 Uncharacterized membra 78.3 0.78 1.7E-05 46.6 0.4 23 63-85 5-27 (423)
384 COG3320 Putative dehydrogenase 78.3 3 6.5E-05 42.7 4.6 35 65-99 2-36 (382)
385 PRK08644 thiamine biosynthesis 78.0 3.6 7.8E-05 38.7 4.9 94 64-160 29-151 (212)
386 TIGR01963 PHB_DH 3-hydroxybuty 78.0 3.2 7E-05 38.7 4.5 31 64-95 2-32 (255)
387 PRK13394 3-hydroxybutyrate deh 77.7 3.6 7.8E-05 38.6 4.8 31 64-95 8-38 (262)
388 PRK07024 short chain dehydroge 77.6 3.9 8.5E-05 38.6 5.1 32 63-95 2-33 (257)
389 PRK14180 bifunctional 5,10-met 77.6 5 0.00011 39.6 5.8 73 64-162 159-233 (282)
390 PRK14177 bifunctional 5,10-met 77.5 7 0.00015 38.7 6.8 73 64-162 160-234 (284)
391 PRK14169 bifunctional 5,10-met 77.4 5.3 0.00011 39.5 5.9 73 64-162 157-231 (282)
392 PRK14167 bifunctional 5,10-met 77.4 5.8 0.00013 39.5 6.3 74 64-162 158-236 (297)
393 PRK12828 short chain dehydroge 77.3 4 8.6E-05 37.5 4.9 31 64-95 8-38 (239)
394 cd01486 Apg7 Apg7 is an E1-lik 77.2 2.7 6E-05 41.9 3.9 31 127-157 106-138 (307)
395 PRK05993 short chain dehydroge 77.1 4.2 9.2E-05 39.0 5.2 33 62-95 3-35 (277)
396 PRK08177 short chain dehydroge 76.8 4.3 9.4E-05 37.5 5.0 31 64-95 2-32 (225)
397 PRK07454 short chain dehydroge 76.8 4.3 9.3E-05 37.8 5.0 33 62-95 5-37 (241)
398 cd01075 NAD_bind_Leu_Phe_Val_D 76.7 5.3 0.00012 37.2 5.5 84 64-158 29-114 (200)
399 PRK09424 pntA NAD(P) transhydr 76.5 6.5 0.00014 42.1 6.7 93 64-161 166-287 (509)
400 PRK06482 short chain dehydroge 76.4 4.4 9.5E-05 38.7 5.0 32 63-95 2-33 (276)
401 cd01339 LDH-like_MDH L-lactate 76.4 2.5 5.5E-05 41.6 3.5 29 66-95 1-29 (300)
402 PRK08267 short chain dehydroge 76.3 3.8 8.3E-05 38.6 4.6 32 63-95 1-32 (260)
403 PRK08251 short chain dehydroge 76.3 4.4 9.5E-05 37.8 5.0 31 64-95 3-33 (248)
404 PRK07066 3-hydroxybutyryl-CoA 76.3 13 0.00027 37.5 8.4 30 64-95 8-37 (321)
405 PRK09496 trkA potassium transp 76.1 3.3 7.1E-05 42.9 4.4 76 64-142 1-78 (453)
406 PRK14166 bifunctional 5,10-met 75.9 5.3 0.00011 39.5 5.5 73 64-162 158-232 (282)
407 cd01489 Uba2_SUMO Ubiquitin ac 75.9 4 8.7E-05 40.9 4.7 93 65-158 1-121 (312)
408 PRK14184 bifunctional 5,10-met 75.7 6.7 0.00015 38.8 6.2 74 64-162 158-236 (286)
409 PLN02494 adenosylhomocysteinas 75.7 8.6 0.00019 40.8 7.3 84 64-158 255-340 (477)
410 PRK14178 bifunctional 5,10-met 75.5 8.5 0.00019 38.0 6.8 73 64-162 153-227 (279)
411 PRK07424 bifunctional sterol d 75.5 3.3 7.1E-05 43.0 4.1 32 63-95 178-209 (406)
412 PRK07102 short chain dehydroge 75.5 4.5 9.7E-05 37.7 4.8 32 63-95 1-32 (243)
413 PRK12827 short chain dehydroge 75.5 3 6.4E-05 38.7 3.5 31 64-95 7-37 (249)
414 TIGR01470 cysG_Nterm siroheme 75.2 4.8 0.0001 37.7 4.8 85 64-155 10-97 (205)
415 PRK12746 short chain dehydroge 75.2 4.6 9.9E-05 37.8 4.8 33 64-97 7-39 (254)
416 PF02719 Polysacc_synt_2: Poly 74.9 4.1 8.8E-05 40.5 4.4 30 66-95 1-30 (293)
417 PRK12464 1-deoxy-D-xylulose 5- 74.9 2.8 6.2E-05 43.0 3.4 33 68-100 1-34 (383)
418 PRK06180 short chain dehydroge 74.8 5.2 0.00011 38.3 5.1 32 63-95 4-35 (277)
419 PRK14190 bifunctional 5,10-met 74.8 6 0.00013 39.1 5.5 73 64-162 159-233 (284)
420 PRK07688 thiamine/molybdopteri 74.7 4 8.8E-05 41.3 4.5 93 63-158 24-147 (339)
421 PRK12549 shikimate 5-dehydroge 74.6 4.2 9.1E-05 40.0 4.5 92 64-159 128-227 (284)
422 PRK14172 bifunctional 5,10-met 74.6 7.7 0.00017 38.3 6.2 72 64-161 159-232 (278)
423 PRK14186 bifunctional 5,10-met 74.6 6.5 0.00014 39.2 5.7 73 64-162 159-233 (297)
424 PF13241 NAD_binding_7: Putati 74.5 7.3 0.00016 32.1 5.3 79 64-155 8-88 (103)
425 PRK09134 short chain dehydroge 74.5 5.9 0.00013 37.4 5.3 33 63-96 9-41 (258)
426 cd08292 ETR_like_2 2-enoyl thi 74.5 7.4 0.00016 37.7 6.2 96 64-160 141-239 (324)
427 PRK08063 enoyl-(acyl carrier p 74.3 5 0.00011 37.4 4.8 32 64-96 5-36 (250)
428 PRK07578 short chain dehydroge 74.3 4.8 0.0001 36.4 4.5 29 65-95 2-30 (199)
429 KOG1429 dTDP-glucose 4-6-dehyd 74.2 4.4 9.6E-05 40.2 4.4 29 58-86 22-50 (350)
430 PRK07904 short chain dehydroge 74.1 6 0.00013 37.6 5.3 32 64-95 9-40 (253)
431 cd00755 YgdL_like Family of ac 74.1 5.1 0.00011 38.3 4.8 101 64-165 12-141 (231)
432 cd05188 MDR Medium chain reduc 73.8 7.7 0.00017 36.0 5.9 95 64-160 136-233 (271)
433 PRK07074 short chain dehydroge 73.8 5.3 0.00012 37.5 4.9 31 64-95 3-33 (257)
434 PLN02858 fructose-bisphosphate 73.8 5.8 0.00013 47.4 6.1 86 64-161 5-100 (1378)
435 PLN02996 fatty acyl-CoA reduct 73.7 5.4 0.00012 42.3 5.3 32 64-95 12-45 (491)
436 PRK14181 bifunctional 5,10-met 73.5 7.1 0.00015 38.7 5.7 74 64-162 154-232 (287)
437 PLN02477 glutamate dehydrogena 73.5 9.8 0.00021 39.6 7.0 90 63-156 206-307 (410)
438 PRK14191 bifunctional 5,10-met 73.1 6.9 0.00015 38.7 5.5 73 64-162 158-232 (285)
439 KOG1198 Zinc-binding oxidoredu 73.0 7 0.00015 39.7 5.7 86 63-149 158-245 (347)
440 PRK00676 hemA glutamyl-tRNA re 73.0 17 0.00037 36.9 8.4 84 63-161 174-263 (338)
441 PRK14170 bifunctional 5,10-met 72.9 7.7 0.00017 38.4 5.8 73 64-162 158-232 (284)
442 PRK14171 bifunctional 5,10-met 72.9 6.8 0.00015 38.8 5.4 72 64-161 160-233 (288)
443 PRK07774 short chain dehydroge 72.7 6.1 0.00013 36.8 4.9 31 64-95 7-37 (250)
444 PRK12429 3-hydroxybutyrate deh 72.6 6 0.00013 36.9 4.9 31 64-95 5-35 (258)
445 PRK09730 putative NAD(P)-bindi 72.6 5.8 0.00013 36.8 4.7 31 64-95 2-32 (247)
446 PRK14187 bifunctional 5,10-met 72.4 7.4 0.00016 38.7 5.5 73 64-162 161-235 (294)
447 PRK05600 thiamine biosynthesis 72.3 5.5 0.00012 40.8 4.8 92 63-157 41-161 (370)
448 PRK06914 short chain dehydroge 72.3 6.2 0.00013 37.6 5.0 31 64-95 4-34 (280)
449 PRK14176 bifunctional 5,10-met 72.1 10 0.00023 37.5 6.5 72 64-161 165-238 (287)
450 PRK14620 NAD(P)H-dependent gly 72.1 6.9 0.00015 38.8 5.4 82 64-148 1-90 (326)
451 PLN02503 fatty acyl-CoA reduct 72.1 5.1 0.00011 43.8 4.7 34 63-96 119-154 (605)
452 cd05313 NAD_bind_2_Glu_DH NAD( 71.9 13 0.00028 36.2 7.0 92 63-156 38-150 (254)
453 COG1087 GalE UDP-glucose 4-epi 71.8 6.1 0.00013 39.5 4.8 30 64-94 1-30 (329)
454 TIGR02354 thiF_fam2 thiamine b 71.8 6.6 0.00014 36.6 4.9 30 64-94 22-51 (200)
455 PRK09414 glutamate dehydrogena 71.5 12 0.00027 39.3 7.2 90 63-156 232-340 (445)
456 PRK12384 sorbitol-6-phosphate 71.5 6.7 0.00015 36.9 5.0 31 64-95 3-33 (259)
457 PRK14182 bifunctional 5,10-met 71.3 7.7 0.00017 38.3 5.4 73 64-162 158-232 (282)
458 PRK08642 fabG 3-ketoacyl-(acyl 71.3 7 0.00015 36.4 5.0 31 64-95 6-36 (253)
459 PRK08643 acetoin reductase; Va 70.9 6.8 0.00015 36.8 4.8 31 64-95 3-33 (256)
460 PRK07814 short chain dehydroge 70.8 7.1 0.00015 37.0 5.0 31 64-95 11-41 (263)
461 PRK12824 acetoacetyl-CoA reduc 70.7 7 0.00015 36.1 4.9 32 63-95 2-33 (245)
462 COG0169 AroE Shikimate 5-dehyd 70.3 10 0.00022 37.5 6.0 92 64-158 127-225 (283)
463 COG0569 TrkA K+ transport syst 70.2 6.5 0.00014 37.3 4.5 80 64-146 1-83 (225)
464 TIGR00936 ahcY adenosylhomocys 70.0 12 0.00025 39.0 6.6 87 64-162 196-284 (406)
465 PF00070 Pyr_redox: Pyridine n 70.0 13 0.00029 28.6 5.6 30 65-96 1-30 (80)
466 KOG1431 GDP-L-fucose synthetas 70.0 6.9 0.00015 37.7 4.5 35 63-97 1-37 (315)
467 cd08250 Mgc45594_like Mgc45594 69.9 6.9 0.00015 38.1 4.8 96 64-161 141-239 (329)
468 PRK12937 short chain dehydroge 69.9 8.4 0.00018 35.7 5.2 31 64-95 6-36 (245)
469 cd08294 leukotriene_B4_DH_like 69.9 7.4 0.00016 37.8 5.0 95 64-159 145-241 (329)
470 COG1088 RfbB dTDP-D-glucose 4, 69.6 7.3 0.00016 38.9 4.7 39 64-102 1-40 (340)
471 PRK06949 short chain dehydroge 69.1 8.5 0.00018 36.0 5.1 31 64-95 10-40 (258)
472 PRK12742 oxidoreductase; Provi 69.1 8 0.00017 35.7 4.8 30 64-94 7-36 (237)
473 COG0604 Qor NADPH:quinone redu 69.1 6.4 0.00014 39.5 4.4 92 64-156 144-238 (326)
474 PLN02516 methylenetetrahydrofo 69.1 10 0.00022 37.9 5.7 73 64-162 168-242 (299)
475 PRK08277 D-mannonate oxidoredu 69.1 5.6 0.00012 37.9 3.9 31 64-95 11-41 (278)
476 TIGR03206 benzo_BadH 2-hydroxy 69.0 7.5 0.00016 36.1 4.6 31 64-95 4-34 (250)
477 PF02558 ApbA: Ketopantoate re 69.0 3.9 8.6E-05 35.4 2.6 79 66-149 1-87 (151)
478 PRK05717 oxidoreductase; Valid 68.8 8.9 0.00019 36.0 5.2 30 64-94 11-40 (255)
479 PRK05597 molybdopterin biosynt 68.7 6.8 0.00015 39.8 4.6 92 63-157 28-148 (355)
480 PRK01438 murD UDP-N-acetylmura 68.6 9.8 0.00021 39.9 5.9 89 64-156 17-106 (480)
481 PRK07890 short chain dehydroge 68.6 7.5 0.00016 36.4 4.6 30 64-94 6-35 (258)
482 smart00822 PKS_KR This enzymat 68.6 8.4 0.00018 33.0 4.6 30 65-94 2-31 (180)
483 cd05288 PGDH Prostaglandin deh 68.5 6.8 0.00015 38.1 4.4 95 64-159 147-244 (329)
484 PLN02897 tetrahydrofolate dehy 68.4 11 0.00024 38.3 5.9 73 64-162 215-289 (345)
485 cd08259 Zn_ADH5 Alcohol dehydr 68.2 7.9 0.00017 37.5 4.8 92 64-160 164-257 (332)
486 PRK07666 fabG 3-ketoacyl-(acyl 68.2 8.9 0.00019 35.6 5.0 31 64-95 8-38 (239)
487 PF00106 adh_short: short chai 68.1 10 0.00022 32.9 5.0 33 65-98 2-34 (167)
488 COG0771 MurD UDP-N-acetylmuram 68.1 13 0.00029 39.1 6.6 89 63-156 7-97 (448)
489 COG1086 Predicted nucleoside-d 68.1 4.4 9.6E-05 43.6 3.1 32 64-95 251-282 (588)
490 COG0300 DltE Short-chain dehyd 68.0 7.8 0.00017 38.0 4.6 35 62-97 5-39 (265)
491 PRK06101 short chain dehydroge 68.0 8.3 0.00018 36.0 4.7 31 64-95 2-32 (240)
492 COG4091 Predicted homoserine d 67.8 7.1 0.00015 39.8 4.3 38 61-99 15-52 (438)
493 PRK06500 short chain dehydroge 67.8 8.4 0.00018 35.8 4.7 30 64-94 7-36 (249)
494 cd01079 NAD_bind_m-THF_DH NAD 67.7 14 0.0003 34.6 6.0 89 64-161 63-158 (197)
495 PRK12936 3-ketoacyl-(acyl-carr 67.7 9.1 0.0002 35.4 4.9 24 64-87 7-30 (245)
496 PRK14183 bifunctional 5,10-met 67.7 9.8 0.00021 37.6 5.2 73 64-162 158-232 (281)
497 PRK06077 fabG 3-ketoacyl-(acyl 67.5 9.2 0.0002 35.6 4.9 31 64-95 7-37 (252)
498 PLN02616 tetrahydrofolate dehy 67.5 12 0.00025 38.4 5.8 72 64-161 232-305 (364)
499 cd01488 Uba3_RUB Ubiquitin act 67.4 8.1 0.00017 38.4 4.6 82 65-147 1-106 (291)
500 PRK06057 short chain dehydroge 67.4 8.6 0.00019 36.2 4.7 30 64-94 8-37 (255)
No 1
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-96 Score=714.97 Aligned_cols=344 Identities=47% Similarity=0.845 Sum_probs=322.8
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCcccc-CCCcccccCccc--CCCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQ-DLPTMVAVKDAD--FSNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~-~~~~~~~~~~~~--~~~vDvVF~al~ 138 (406)
||+||+|+|||||+|.||+|+|.+||++|+..+++++++|+++..+||++.+. ++. ++..+++. ..++|+||+|+|
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~-~~~~~~~~~~~~~~DvvFlalP 79 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLP-FQTIDPEKIELDECDVVFLALP 79 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccc-cccCChhhhhcccCCEEEEecC
Confidence 57999999999999999999999999999888888888999999999999852 232 33333332 346899999999
Q ss_pred CcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHH
Q 015441 139 HGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL 217 (406)
Q Consensus 139 ~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l 217 (406)
|++|+++++.+ ++|++|||+|+|||++|.+.|++||+.+|..||++.+++||||||+|++|+++++|||||||+||.+|
T Consensus 80 hg~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIAnPGCypTa~iL 159 (349)
T COG0002 80 HGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIANPGCYPTAAIL 159 (349)
T ss_pred chhHHHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEeeCCCchHHHHHH
Confidence 99999999986 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCcce-EEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceEEEEEEEe
Q 015441 218 PLVPLIQANLIQYRN-IIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLM 296 (406)
Q Consensus 218 ~L~PL~~~~l~~i~~-i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v~~t~~rV 296 (406)
+|+||.++++++.+. ++|++++|+|||||++...+|+.++.+|++||++..|||+|||+|+|+++.+....++||||.+
T Consensus 160 al~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~~~e~~~~~~~Y~~~~HrH~pEi~q~l~~l~~~~~~v~FtPhl~ 239 (349)
T COG0002 160 ALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNHFPEVNDSLRPYGLTGHRHTPEIEQHLGRLAGRKVPVIFTPHLG 239 (349)
T ss_pred HHHHHHHcCCcCCCCceEEEEeEecCcCCCCccccccchhhccccccccccccCchHHHHHHhhhcccCcCceEEecccc
Confidence 999999999988887 5999999999999999999999999999999999999999999999998877667799999999
Q ss_pred eecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccccccCCCcEEEEEEEeCcCCeEEEEEEehhhh
Q 015441 297 PMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLV 376 (406)
Q Consensus 297 Pv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~v~g~n~~~v~~~~~~~~~~~~~~~v~DNL~ 376 (406)
|++||+++|+|+.+++.++.+|++++|+++|+++|||+|.+.+.+|++++|.|+|+|+||+..+++.++++++++||||+
T Consensus 240 p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~k~V~GsN~cdIgf~~d~~~~rvvvvsaIDNL~ 319 (349)
T COG0002 240 PFVRGILATIYLKLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGSNFCDIGFAVDERTGRVVVVSAIDNLV 319 (349)
T ss_pred cccceEEEEEEEecCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCChhhhcCCcceEEEEEEcCCCCEEEEEEEecccc
Confidence 99999999999999999999999999999999999999999878999999999999999988888889999999999999
Q ss_pred HhHHHHHHHHHHHHhCCCcccCCCCCCCCC
Q 015441 377 KGASGQALQNLNIMLGFPENTGLLYQPLFP 406 (406)
Q Consensus 377 KGAAgqAVQ~~nl~~g~~e~~gl~~~~~~p 406 (406)
||||||||||||+||||+||+||.+.|++|
T Consensus 320 KGAAGQAVQnmNim~G~dE~~GL~~~p~~P 349 (349)
T COG0002 320 KGAAGQAVQNMNIMFGFDETLGLPFVPLYP 349 (349)
T ss_pred ccHHHHHHHHHHHHcCCchhhCCCcCCCCC
Confidence 999999999999999999999999999998
No 2
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=100.00 E-value=4.1e-93 Score=719.95 Aligned_cols=347 Identities=81% Similarity=1.241 Sum_probs=327.1
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
+.+++||+|+|||||+|++|+|+|++||+++++.+++++++|+.+.+.+|++.+.++..+++++.+++.++|+||+|+|+
T Consensus 35 ~~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~ 114 (381)
T PLN02968 35 SEEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH 114 (381)
T ss_pred cccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH
Confidence 35778999999999999999999999999999999999999999999999887656554555555557889999999999
Q ss_pred cchHHHHhhCCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHHH
Q 015441 140 GTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPL 219 (406)
Q Consensus 140 ~~s~~~~~~l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~L 219 (406)
+.++++++.+++|++|||+|++||+++++.|++||++||+.||+|++++||+||+||++++++++|||||||||+++|+|
T Consensus 115 ~~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~r~~i~~~~iIAnPgC~~t~~~laL 194 (381)
T PLN02968 115 GTTQEIIKALPKDLKIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQREEIKSARLVANPGCYPTGIQLPL 194 (381)
T ss_pred HHHHHHHHHHhCCCEEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhCHHHhcCCCEEECCCCHHHHHHHHH
Confidence 99999999887899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceEEEEEEEeeec
Q 015441 220 VPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMI 299 (406)
Q Consensus 220 ~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~ 299 (406)
+||+++++++.++|+|+++||+||||+++++++|+.|+.+|++||+.+.|||+|||++.+.++++..+.|+||||||||+
T Consensus 195 ~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~~n~~~y~~~~h~h~pEie~~~~~~~~~~~~v~ft~~~vPv~ 274 (381)
T PLN02968 195 VPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAEGIGAYGVTRHRHVPEIEQGLADAAGSKVTPSFTPHLMPMS 274 (381)
T ss_pred HHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHHhcccceeeccCCCCCcchHHHHHHHHhCCCCCEEEEeEEeecc
Confidence 99999987765789999999999999999999899999999999999999999999999988777778899999999999
Q ss_pred ceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccccccCCCcEEEEEEEeCcCCeEEEEEEehhhhHhH
Q 015441 300 RGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGA 379 (406)
Q Consensus 300 rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~v~g~n~~~v~~~~~~~~~~~~~~~v~DNL~KGA 379 (406)
|||++|+|++++++++.+|++++|+++|++++||++.+++.+|+|++++|+|+|+||+.++++++++++|+++|||+|||
T Consensus 275 rG~~~tv~v~~~~~~~~~~v~~~~~~~y~~~~fV~~~~~~~~P~~~~v~gtn~~~ig~~~~~~~~~l~~~~~~DNL~KGA 354 (381)
T PLN02968 275 RGMQSTVYVHYAPGVTAEDLHQHLKERYEGEEFVKVLERGAVPHTDHVRGSNYCELNVFADRIPGRAIIISVIDNLVKGA 354 (381)
T ss_pred ccEEEEEEEEeCCCCCHHHHHHHHHHhCCCCCEEEeCCCCCCCChHHHCCCCcEEEEEEEeCCCCEEEEEEEeccHHHHH
Confidence 99999999999999999999999999999999999988777999999999999999999988888999999999999999
Q ss_pred HHHHHHHHHHHhCCCcccCCCCCCCCC
Q 015441 380 SGQALQNLNIMLGFPENTGLLYQPLFP 406 (406)
Q Consensus 380 AgqAVQ~~nl~~g~~e~~gl~~~~~~p 406 (406)
|||||||||+|+|||||+||.++|+||
T Consensus 355 AgqAVQ~~nl~~g~~E~~GL~~~~~~p 381 (381)
T PLN02968 355 SGQAVQNLNLMMGLPETTGLLQQPLFP 381 (381)
T ss_pred HHHHHHHHHHHhCCCcccCCccCCCCC
Confidence 999999999999999999999999998
No 3
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=100.00 E-value=3.7e-89 Score=685.09 Aligned_cols=343 Identities=49% Similarity=0.859 Sum_probs=315.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE-eccCcCCccccccccCccccCCCcccccCcccC-CCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM-TADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l-~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~al~~~~ 141 (406)
+||+|+|||||+|++++|+|.+||.++++.+ .+++++|+++...++++.+.....+...+.+++ .++|+||+|+|++.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 4899999999999999999999999999976 667789999988888775421112333333344 48999999999999
Q ss_pred hHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHHHH
Q 015441 142 TQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLV 220 (406)
Q Consensus 142 s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~L~ 220 (406)
++++++++ ++|++|||+|++|||++.+.|++||+.+|..||++.+++||+||+|+++++++++|||||||||+++++|+
T Consensus 81 s~~~~~~~~~~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~~~i~~~~iianPgC~~t~~~l~L~ 160 (346)
T TIGR01850 81 SAELAPELLAAGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHREEIKGARLIANPGCYPTATLLALA 160 (346)
T ss_pred HHHHHHHHHhCCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCHHHhCCCcEEEcCCcHHHHHHHHHH
Confidence 99999876 78999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceEEEEEEEeeecc
Q 015441 221 PLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIR 300 (406)
Q Consensus 221 PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~r 300 (406)
||++.++++.++|+|+|+||+|||||++++++++.++.+|+.||+.+.|||.|||++.++++++++++|+||||||||+|
T Consensus 161 PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~~~~~~~~~~y~~~~h~h~~Ei~~~l~~~~~~~~~v~ft~~~vPv~r 240 (346)
T TIGR01850 161 PLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHFPEVNENLRPYKVTGHRHTPEIEQELGRLAGGKVKVSFTPHLVPMTR 240 (346)
T ss_pred HHHHcCCCCCCcEEEEEEEECcccCcCccccccchhhcCCeeeeccCCcCcHHHHHHHHHHhcCCCCCEEEEeEEeeccc
Confidence 99999877666899999999999999999999888999999999999999999999999998877788999999999999
Q ss_pred eeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccccccCCCcEEEEEEEeCcCCeEEEEEEehhhhHhHH
Q 015441 301 GMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGAS 380 (406)
Q Consensus 301 G~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~v~g~n~~~v~~~~~~~~~~~~~~~v~DNL~KGAA 380 (406)
||++|+|++++++++.+|++++|+++|+++|||++.+++.+|+|++++|+|+|+||+..+...+++++|+++|||+||||
T Consensus 241 G~~~tv~v~~~~~~~~~~~~~~~~~~y~~~~~V~v~~~~~~p~~~~v~g~n~~~ig~~~d~~~~~l~~~~~~DNL~KGAA 320 (346)
T TIGR01850 241 GILATIYAKLKDGLTEEDLRAAYEEFYADEPFVRVLPEGEYPSTKAVIGSNFCDIGFAVDERTGRVVVVSAIDNLVKGAA 320 (346)
T ss_pred cEEEEEEEecCCCCCHHHHHHHHHHHhCCCCcEEEeCCCCCcChHHhcCCCeEEEEEEEcCCCCEEEEEEEeechhhhHH
Confidence 99999999999999999999999999999999999988779999999999999999655656789999999999999999
Q ss_pred HHHHHHHHHHhCCCcccCCCCCCCCC
Q 015441 381 GQALQNLNIMLGFPENTGLLYQPLFP 406 (406)
Q Consensus 381 gqAVQ~~nl~~g~~e~~gl~~~~~~p 406 (406)
||||||||+|+|||||+||.++|+||
T Consensus 321 g~AVq~~n~~~g~~e~~gl~~~~~~p 346 (346)
T TIGR01850 321 GQAVQNMNLMFGFDETTGLPFPPLYP 346 (346)
T ss_pred HHHHHHHHHHcCCCcccCCCcCCCCC
Confidence 99999999999999999999999998
No 4
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=100.00 E-value=2.4e-84 Score=649.73 Aligned_cols=342 Identities=50% Similarity=0.844 Sum_probs=311.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
||+||+|+||||++|++++++|.+||.++++++.++++.|+.+...++++.......+++.++..+.++|+||+|+|++.
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~ 80 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV 80 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH
Confidence 57899999999999999999999999999999999888888888777766532111233343334568999999999999
Q ss_pred hHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHHHH
Q 015441 142 TQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLV 220 (406)
Q Consensus 142 s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~L~ 220 (406)
+.++++++ ++|++|||+|++|||++.+.|++||+.+|..||++.++.||+||+|+++++++++|||||||||+++++|+
T Consensus 81 ~~~~v~~a~~aG~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~~~i~~~~iIanPgC~~t~~~l~L~ 160 (343)
T PRK00436 81 SMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNREEIKGARLIANPGCYPTASLLALA 160 (343)
T ss_pred HHHHHHHHHhCCCEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCHHHhcCCCEEECCCCHHHHHHHHHH
Confidence 99999876 78999999999999998889999999999999999999999999999999989999999999999999999
Q ss_pred HHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceEEEEEEEeeecc
Q 015441 221 PLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIR 300 (406)
Q Consensus 221 PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~r 300 (406)
||++.+++..++++|+|+||+||||+++++++++.++.+|+.||+.+.|+|+|||.+.++++++ +|+||||||||+|
T Consensus 161 PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~~~~~~~~y~~~~h~h~~Ei~~~l~~~~~---~v~~t~~~vPv~~ 237 (343)
T PRK00436 161 PLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFSEVNENLRPYKVGGHRHTPEIEQELSALAG---EVSFTPHLVPMTR 237 (343)
T ss_pred HHHHcCCCCCCCEEEEEEEecccCCCCccccccchhhcCCeeecccCCCCCHHHHHHHHHHhcC---CEEEEeEEecccC
Confidence 9999875543489999999999999999999888888899999999999999999999988765 6999999999999
Q ss_pred eeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccccccCCCcEEEEEEEeCcCCeEEEEEEehhhhHhHH
Q 015441 301 GMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGAS 380 (406)
Q Consensus 301 G~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~v~g~n~~~v~~~~~~~~~~~~~~~v~DNL~KGAA 380 (406)
||++|+|+++++++|.+|++++|+++|+++|||++.+++.+|+|++++|+|.|+||+..+...+++++|+++|||+||||
T Consensus 238 G~~~tv~v~~~~~~~~~~~~~~~~~~y~~~~~v~v~~~~~~p~~~~v~g~~~~~ig~~~d~~~~~~~~~~~~DNL~kGAA 317 (343)
T PRK00436 238 GILATIYARLKDPVTAEDVRAAYEEFYADEPFVRVLPEGQYPETKSVRGSNFCDIGFAVDERTGRLVVVSAIDNLVKGAA 317 (343)
T ss_pred cEEEEEEEEeCCCCCHHHHHHHHHHHhCCCCcEEEeCCCCCcchhhhCCCCeEEEEEEEcCCCCEEEEEEEecccchhHH
Confidence 99999999999999999999999999999999999987779999999999999999544545779999999999999999
Q ss_pred HHHHHHHHHHhCCCcccCCCCCCCCC
Q 015441 381 GQALQNLNIMLGFPENTGLLYQPLFP 406 (406)
Q Consensus 381 gqAVQ~~nl~~g~~e~~gl~~~~~~p 406 (406)
+|||||||+|+|||||+||+.+|+||
T Consensus 318 ~~Avq~~nl~~g~~e~~gl~~~~~~~ 343 (343)
T PRK00436 318 GQAVQNMNIMFGLDETTGLPLIPLYP 343 (343)
T ss_pred HHHHHHHHHHcCCCcccCCCcCCCCC
Confidence 99999999999999999999999998
No 5
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=100.00 E-value=7.6e-79 Score=599.04 Aligned_cols=297 Identities=32% Similarity=0.481 Sum_probs=268.8
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
||+||||+|||||+|++|+|+|.+||+++++.+.++... .+ ..+++.+.++|+||+|+|+++
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--~~----------------~~~~~~~~~~DvvFlalp~~~ 62 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--DA----------------AARRELLNAADVAILCLPDDA 62 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--cc----------------cCchhhhcCCCEEEECCCHHH
Confidence 678999999999999999999999999999999865432 11 011334568999999999999
Q ss_pred hHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhcccccc---chhhccCCcEEecCCChHHHHHH
Q 015441 142 TQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEI---SREDIKNARLVANPGCYPTSIQL 217 (406)
Q Consensus 142 s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~---~~~~i~~~~iVanPgC~tta~~l 217 (406)
++++++++ ++|++|||+|+|||+++ +++||+||+ ++++++++++|||||||+|+++|
T Consensus 63 s~~~~~~~~~~g~~VIDlSadfRl~~-------------------~~~yglPEvn~~~~~~i~~~~~IanPgC~~Ta~~l 123 (313)
T PRK11863 63 AREAVALIDNPATRVIDASTAHRTAP-------------------GWVYGFPELAPGQRERIAAAKRVANPGCYPTGAIA 123 (313)
T ss_pred HHHHHHHHHhCCCEEEECChhhhcCC-------------------CCeEEcCccCHHHHHHhhcCCeEEcCCcHHHHHHH
Confidence 99999986 78999999999999987 456899998 57788889999999999999999
Q ss_pred HHHHHHHccCCCcc-eEEEEEeeccCccCcchhhccc--HHHHhcCcccccCC-cccchhhhhhhhccccCCCceEEEEE
Q 015441 218 PLVPLIQANLIQYR-NIIIDAKSGVSGAGRGAKEANL--YSEIAEGIYSYGVT-RHRHVPEIEQGLTGFASSKVTVSFTP 293 (406)
Q Consensus 218 ~L~PL~~~~l~~i~-~i~v~t~~gvSGaG~~~~~~~~--~~e~~~ni~py~~~-~h~h~pEi~~~l~~i~~~~~~v~~t~ 293 (406)
+|+||++.++++-. .+++++++|+||||++++++++ +.++.+|++||+.+ .|||+|||+|.|+.+ .++.|||
T Consensus 124 aL~PL~~~~li~~~~~i~i~a~SG~SGAG~~~~~~~~~~~~~~~~n~~~Y~~~~~HrH~pEi~~~l~~~----~~~~F~P 199 (313)
T PRK11863 124 LLRPLVDAGLLPADYPVSINAVSGYSGGGKAMIAAYEAAPDGKAPAFRLYGLGLAHKHLPEMQAHAGLA----RRPIFTP 199 (313)
T ss_pred HHHHHHHcCCcccCceEEEEEccccccCCccchHHHhhhhhhhccCeeeccCCcCCcchHHHHHHhccc----cCcEEEe
Confidence 99999999876422 5899999999999999999998 99999999999999 999999999998654 4688999
Q ss_pred EEeeecceeEEEEEEEe---CCCCCHHHHHHHHHHHcCCCCcEEecCCCC-----ccccccccCCCcEEEEEEEeCcCCe
Q 015441 294 HLMPMIRGMQSTIYVEM---APGVTIEDLYQQLKISYEHEEFVKLLEKGV-----VPRTHNVRGSNYCLMNVFPDRIPGR 365 (406)
Q Consensus 294 ~rVPv~rG~~~ti~v~l---~~~~s~eev~~~l~~~y~~~~fV~v~~~~~-----~P~~~~v~g~n~~~v~~~~~~~~~~ 365 (406)
|.+|++|||++|+|+++ +++++.+|++++|+++|+++|||+|.+++. +|++++|.|+|+|+|++.++++.++
T Consensus 200 hl~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~~epfV~v~~~~~~~~~~~p~~~~v~gtn~~~i~v~~~~~~~~ 279 (313)
T PRK11863 200 SVGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYAGEAFVRVAPLDESAALDFLDPEALNGTNRLELFVFGNEDHGQ 279 (313)
T ss_pred eEccccCcEEEEEEEEecccCCCCCHHHHHHHHHHHcCCCCeEEEecCCcccccCCCCHHHhCCCCeEEEEEEEcCCCCE
Confidence 99999999999999997 888999999999999999999999998766 7889999999999999999888889
Q ss_pred EEEEEEehhhhHhHHHHHHHHHHHHhCCCcccCC
Q 015441 366 AIIISVIDNLVKGASGQALQNLNIMLGFPENTGL 399 (406)
Q Consensus 366 ~~~~~v~DNL~KGAAgqAVQ~~nl~~g~~e~~gl 399 (406)
+++++++|||+||||||||||||+|+|||||+||
T Consensus 280 ~~v~s~iDNL~KGAAGqAvQn~Nl~~G~~E~~GL 313 (313)
T PRK11863 280 AVLVARLDNLGKGASGAAVQNLNLMLGLDEATGL 313 (313)
T ss_pred EEEEEEcccccccHHHHHHHHHHHHcCCcccccC
Confidence 9999999999999999999999999999999998
No 6
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=100.00 E-value=4.8e-76 Score=575.87 Aligned_cols=289 Identities=30% Similarity=0.473 Sum_probs=260.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.||+|+|||||+|.||+|+|.+||++|++.+++++. +.. . +. ++.++++|+||+|+|+++++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-----------~~~-----~-~~-~~~~~~~D~vFlalp~~~s~ 63 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-----------KDA-----A-ER-AKLLNAADVAILCLPDDAAR 63 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-----------cCc-----C-CH-hHhhcCCCEEEECCCHHHHH
Confidence 589999999999999999999999999999987643 110 0 00 12236799999999999999
Q ss_pred HHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhcccccc---chhhccCCcEEecCCChHHHHHHHH
Q 015441 144 EIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEI---SREDIKNARLVANPGCYPTSIQLPL 219 (406)
Q Consensus 144 ~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~---~~~~i~~~~iVanPgC~tta~~l~L 219 (406)
++++.+ ++|++|||+|+|||+++ +++||+||+ ++++|+++++|||||||+|+++|+|
T Consensus 64 ~~~~~~~~~g~~VIDlSadfRl~~-------------------~~~yglPEln~~~~~~i~~a~lIAnPgC~aTa~~LaL 124 (310)
T TIGR01851 64 EAVSLVDNPNTCIIDASTAYRTAD-------------------DWAYGFPELAPGQREKIRNSKRIANPGCYPTGFIALM 124 (310)
T ss_pred HHHHHHHhCCCEEEECChHHhCCC-------------------CCeEEccccCHHHHHhhccCCEEECCCCHHHHHHHHH
Confidence 999876 78999999999999986 457999999 7888899999999999999999999
Q ss_pred HHHHHccCCCcc-eEEEEEeeccCccCcchhhccc----HHHHhcCcccccCC-cccchhhhhhhhccccCCCceEEEEE
Q 015441 220 VPLIQANLIQYR-NIIIDAKSGVSGAGRGAKEANL----YSEIAEGIYSYGVT-RHRHVPEIEQGLTGFASSKVTVSFTP 293 (406)
Q Consensus 220 ~PL~~~~l~~i~-~i~v~t~~gvSGaG~~~~~~~~----~~e~~~ni~py~~~-~h~h~pEi~~~l~~i~~~~~~v~~t~ 293 (406)
+||++++++.-. .+++++++|+|||||+++++++ +.++.+|++||+++ .|||+|||+|.++.+ .+++|||
T Consensus 125 ~PL~~~~li~~~~~~~~~a~SG~SGAGr~~~~~l~~q~~~~e~~~~~~~Y~~~~~HrH~pEi~q~l~~~----~~v~FtP 200 (310)
T TIGR01851 125 RPLVEAGILPADFPITINAVSGYSGGGKAMIADYEQGSADNPSLQPFRIYGLALTHKHLPEMRVHSGLA----LPPIFTP 200 (310)
T ss_pred HHHHHcCCccccceEEEEeccccCccChhhhHHhhhcccchhhccCceeccCCCCCCcHHHHHHHhCCC----CCEEEEe
Confidence 999999876422 5889999999999999999998 89999999999999 999999999998654 5699999
Q ss_pred EEeeecceeEEEEEEEe---CCCCCHHHHHHHHHHHcCCCCcEEecCCCC-------ccccccccCCCcEEEEEEEeCcC
Q 015441 294 HLMPMIRGMQSTIYVEM---APGVTIEDLYQQLKISYEHEEFVKLLEKGV-------VPRTHNVRGSNYCLMNVFPDRIP 363 (406)
Q Consensus 294 ~rVPv~rG~~~ti~v~l---~~~~s~eev~~~l~~~y~~~~fV~v~~~~~-------~P~~~~v~g~n~~~v~~~~~~~~ 363 (406)
|.+|++||+++|+|+++ +++++.+|++++|+++|+++|||+|.+.+. +|+++++.|||+|+|++..+++.
T Consensus 201 hl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~~Y~~epfVrv~~~~~~~~~~~~~p~~k~v~gtn~~~i~~~~d~~~ 280 (310)
T TIGR01851 201 AVGNFAQGMAVTIPLHLQTLASKVSPADIHAALADYYQGEQFVRVAPLDDVETLDNTFLDPQGLNGTNRLDLFVFGSDDG 280 (310)
T ss_pred EEccccCcEEEEEEEEeccCCCCCCHHHHHHHHHHHHCCCCcEEEecCCcccccccCCCChHHhCCCceEEEEEEEcCCC
Confidence 99999999999999999 888999999999999999999999987654 79999999999999999998889
Q ss_pred CeEEEEEEehhhhHhHHHHHHHHHHHHhCC
Q 015441 364 GRAIIISVIDNLVKGASGQALQNLNIMLGF 393 (406)
Q Consensus 364 ~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~ 393 (406)
+++++++++|||+||||||||||||+|+||
T Consensus 281 ~~~vv~saiDNL~KGAaGqAvQnmNlm~G~ 310 (310)
T TIGR01851 281 ERALLVARLDNLGKGASGAAVQNLNIMLGL 310 (310)
T ss_pred CEEEEEEEccccccchHHHHHHHHHHHcCC
Confidence 999999999999999999999999999997
No 7
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=5.8e-74 Score=570.58 Aligned_cols=297 Identities=19% Similarity=0.284 Sum_probs=265.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHc--CCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~--hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
+++||||+|||||+|++|+|+|++ ||.++++.++|++++|+++.. .+.++. ++++++.+|.++|+||+|+|+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~-----~~~~~~-v~~~~~~~~~~~Dvvf~a~p~ 76 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRF-----GGKSVT-VQDAAEFDWSQAQLAFFVAGR 76 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEE-----CCcceE-EEeCchhhccCCCEEEECCCH
Confidence 568999999999999999999998 999999999999999999983 343433 445555667899999999999
Q ss_pred cchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccch---hhccCCcEEecCCChHHHH
Q 015441 140 GTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISR---EDIKNARLVANPGCYPTSI 215 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~---~~i~~~~iVanPgC~tta~ 215 (406)
++++++++.+ ++|++|||+|+||||++ ++| ||+||+|+ +.++++++|||||||||++
T Consensus 77 ~~s~~~~~~~~~~g~~VIDlS~~fRl~~--------~vP-----------~~lPEvn~~~l~~i~~~~iIAnPgC~~t~~ 137 (336)
T PRK08040 77 EASAAYAEEATNAGCLVIDSSGLFALEP--------DVP-----------LVVPEVNPFVLADYRNRNIIAVADSLTSQL 137 (336)
T ss_pred HHHHHHHHHHHHCCCEEEECChHhcCCC--------CCc-----------eEccccCHHHHhhhccCCEEECCCHHHHHH
Confidence 9999999986 78999999999999987 233 78888888 6667789999999999999
Q ss_pred HHHHHHHHHccCCCcceEEEEEeeccCccCcchhhc----------------ccHHH-HhcCcccc------cCCcccc-
Q 015441 216 QLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEA----------------NLYSE-IAEGIYSY------GVTRHRH- 271 (406)
Q Consensus 216 ~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~----------------~~~~e-~~~ni~py------~~~~h~h- 271 (406)
+|+|+||++.+ .+++|+|+||||+||||++++++ .+|.+ +++|++|| +...|||
T Consensus 138 ~laL~PL~~~~--~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~~~erh~ 215 (336)
T PRK08040 138 LTAIKPLIDQA--GLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSVREERRL 215 (336)
T ss_pred HHHHHHHHHhC--CCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcchHhhhh
Confidence 99999999985 56789999999999999999988 56655 88999999 8888999
Q ss_pred hhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-ccccCC
Q 015441 272 VPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HNVRGS 350 (406)
Q Consensus 272 ~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~v~g~ 350 (406)
.||+++.|+ ++.+.|+||||||||+|||++|+|++++++++.++++++|+++ |||++.+++.+|+| +++.|+
T Consensus 216 ~~Ei~kiL~---~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~v~~~~i~~~l~~~----p~v~v~~~~~~P~~~~~v~g~ 288 (336)
T PRK08040 216 VDQVRKILQ---DEGLPISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALEQG----EDIVLSEENDYPTQVGDASGN 288 (336)
T ss_pred HHHHHHHhC---CCCCeEEEEeEEecchhcEEEEEEEEECCCCCHHHHHHHHhcC----CCEEEECCCCCCCchhHcCCC
Confidence 899998774 3567899999999999999999999999999999999999984 99999988889999 799999
Q ss_pred CcEEEEEEEeCc--CCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 351 NYCLMNVFPDRI--PGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 351 n~~~v~~~~~~~--~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
|.|+||+.+++. ++++++|+++|||+|||||||||++|++.+
T Consensus 289 n~~~Vgr~~~~~~~~~~l~~~~~~DNL~KGAAg~AVQiae~l~~ 332 (336)
T PRK08040 289 PHLSIGCVRNDYGMPEQLQFWSVADNVRFGGALMAVKTAEKLVQ 332 (336)
T ss_pred ceEEEEEEEccCCCCCEEEEEEEehhHHHHHHHHHHHHHHHHHH
Confidence 999999999766 789999999999999999999999999865
No 8
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=6.4e-71 Score=549.80 Aligned_cols=295 Identities=21% Similarity=0.328 Sum_probs=258.9
Q ss_pred CccEEEEECcccHHHHHHHHHHH--cCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~--~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
+|+||+|+|||||+|++|+|+|. +||..+++.+++++++|+++.. .+.++. ++..++++|.++|+||+|+|+
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~-----~~~~l~-~~~~~~~~~~~vD~vFla~p~ 76 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPF-----AGKNLR-VREVDSFDFSQVQLAFFAAGA 76 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeecc-----CCcceE-EeeCChHHhcCCCEEEEcCCH
Confidence 55899999999999999999999 7999999999999999998873 333332 444444557889999999999
Q ss_pred cchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccC---CcEEecCCChHHHH
Q 015441 140 GTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKN---ARLVANPGCYPTSI 215 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~---~~iVanPgC~tta~ 215 (406)
+++.++++.+ ++|++|||+|+|||+++ +| |++||+|++.++. +++|||||||||++
T Consensus 77 ~~s~~~v~~~~~~G~~VIDlS~~fR~~~---------~p-----------l~lPEvn~~~i~~~~~~~iIAnPgC~~t~~ 136 (336)
T PRK05671 77 AVSRSFAEKARAAGCSVIDLSGALPSAQ---------AP-----------NVVPEVNAERLASLAAPFLVSSPSASAVAL 136 (336)
T ss_pred HHHHHHHHHHHHCCCeEEECchhhcCCC---------CC-----------EEecccCHHHHccccCCCEEECCCcHHHHH
Confidence 9999999876 88999999999999963 33 7888888888876 89999999999999
Q ss_pred HHHHHHHHHccCCCcceEEEEEeeccCccCcchhhc--ccHHHHhcCcccc-----------cCC---------cc----
Q 015441 216 QLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEA--NLYSEIAEGIYSY-----------GVT---------RH---- 269 (406)
Q Consensus 216 ~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~--~~~~e~~~ni~py-----------~~~---------~h---- 269 (406)
+++|+||++. +++++|+|+||||+||||++++++ .++.+.. |++|| ++. .|
T Consensus 137 ~laL~PL~~~--~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~-n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~~eE 213 (336)
T PRK05671 137 AVALAPLKGL--LDIQRVQVTACLAVSSLGREGVSELARQTAELL-NARPLEPRFFDRQVAFNLLAQVGAPDAQGHTALE 213 (336)
T ss_pred HHHHHHHHHh--cCCCEEEEEEeecCcccCcccchHHHHHHHHHh-CCCCccccccccccccccccccCccccCCccHHH
Confidence 9999999854 788999999999999999999998 4455666 77888 654 68
Q ss_pred -cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-ccc
Q 015441 270 -RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HNV 347 (406)
Q Consensus 270 -~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~v 347 (406)
||.||+++.|+. ..++|+||||||||+|||+.|+|++++++++.++++++|+++ |||++.+++.+|+| +++
T Consensus 214 ~r~~~Ei~kiL~~---~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~~~----~~v~v~~~~~~p~~~~~v 286 (336)
T PRK05671 214 RRLVAELRQLLGL---PELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALEAA----PGIELVEAGDYPTPVGDA 286 (336)
T ss_pred HHHHHHHHHHhCC---CCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHhCC----CCeEEeCCCCCCCChHHc
Confidence 899999998753 367799999999999999999999999999999999999944 99999988779999 699
Q ss_pred cCCCcEEEEEEEe--CcCCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 348 RGSNYCLMNVFPD--RIPGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 348 ~g~n~~~v~~~~~--~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
.|+|.|+||+.++ .+++++++|+++|||+||||+|||||||++.+
T Consensus 287 ~g~~~~~vg~~~~~~~~~~~l~~~~~~DNL~kGAA~~AVq~~~~l~~ 333 (336)
T PRK05671 287 VGQDVVYVGRVRAGVDDPCQLNLWLTSDNVRKGAALNAVQVAELLIK 333 (336)
T ss_pred CCCCeEEEEEEEecCCCCCEEEEEEEehhHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 45679999999999999999999999999865
No 9
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=100.00 E-value=1.1e-70 Score=550.79 Aligned_cols=312 Identities=25% Similarity=0.395 Sum_probs=276.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe-ccCcCCccccccccCc-----cc--cCCCcccccCcccCCCCCEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT-ADRKAGQSIGSVFPHL-----IS--QDLPTMVAVKDADFSNVDAVFC 135 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~-s~~~~G~~i~~v~p~l-----~~--~~~~~~~~~~~~~~~~vDvVF~ 135 (406)
+||+|+||||++|++|+++|.+||.++++.+. ++.++|+.+..++|+. .+ .++ .++..+++.+.++|+||+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~DvVf~ 79 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDL-PIVEPEPVASKDVDIVFS 79 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCcccccee-EEEeCCHHHhccCCEEEE
Confidence 58999999999999999999999999999984 5567899888877762 11 111 233344445678999999
Q ss_pred cCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHH
Q 015441 136 CLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTS 214 (406)
Q Consensus 136 al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta 214 (406)
|+|++++.++++++ ++|++|||+|++|||++ +.||.+|++|.++ ||+||++|++++++++|||||||||+
T Consensus 80 a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~--------~~~~~~p~vn~~~-~~~~e~~~~~~~~~~iVanPgC~~t~ 150 (341)
T TIGR00978 80 ALPSEVAEEVEPKLAEAGKPVFSNASNHRMDP--------DVPLIIPEVNSDH-LELLKVQKERGWKGFIVTNPNCTTAG 150 (341)
T ss_pred eCCHHHHHHHHHHHHHCCCEEEECChhhccCC--------CCceeccccCHHH-HhhHHhhhhhccCccEEeCCCcHHHH
Confidence 99999999999876 78999999999999998 5799999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCc-ccchhhhhhhhccccC-----CCce
Q 015441 215 IQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGLTGFAS-----SKVT 288 (406)
Q Consensus 215 ~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~-h~h~pEi~~~l~~i~~-----~~~~ 288 (406)
++|+|+||++++ ++++++|+|+||+||||+++.+ +.++++|++||..+. |||.|||++.|.+..+ +.++
T Consensus 151 ~~lal~pL~~~~--~i~~v~v~t~~gvSgaG~~~~~---~~~~~~Ni~py~~~~ehrh~~Ei~~il~~~~~~~~~~~~~~ 225 (341)
T TIGR00978 151 LTLALKPLIDAF--GIKKVHVTTMQAVSGAGYPGVP---SMDILDNIIPHIGGEEEKIERETRKILGKLENGKIEPAPFS 225 (341)
T ss_pred HHHHHHHHHHhC--CCcEEEEEEEEccCCCCCCCCc---cchhhCCeEecCcHHHHHHHHHHHHHhCccccCcccCCCce
Confidence 999999999985 5679999999999999999766 468999999999888 9999999999876544 3678
Q ss_pred EEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCC----------CCcEEecCCCCcccccccc--CCCc-EEE
Q 015441 289 VSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEH----------EEFVKLLEKGVVPRTHNVR--GSNY-CLM 355 (406)
Q Consensus 289 v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~----------~~fV~v~~~~~~P~~~~v~--g~n~-~~v 355 (406)
|+||||||||+|||++|+|++++++++.++++++|+++|+. +|||++.+++.+|+|+++. |+|+ |+|
T Consensus 226 v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~fv~~~~~~~~p~~~~~~~~g~~~~~~i 305 (341)
T TIGR00978 226 VSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLGLPSAPEKPIIVRDEEDRPQPRLDRDAGGGMAVTV 305 (341)
T ss_pred EEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHHhCcCccccccCCCCCCCcEEECCCCCCCCcceeeecCCCceEEE
Confidence 99999999999999999999999999999999999999999 9999999887799999887 9988 999
Q ss_pred EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 356 NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 356 ~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
|+.+ .+++++.+|+++|||+||||||||||||+|+
T Consensus 306 g~~~-~~~~~l~~~~~~DNl~kGaA~~avq~~n~~~ 340 (341)
T TIGR00978 306 GRLR-EEGGSLKYVVLGHNLVRGAAGATLLNAELAY 340 (341)
T ss_pred EeEE-CCCCeEEEEEEEchHHHHHHHHHHHHHHHHh
Confidence 9654 4577999999999999999999999999997
No 10
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=100.00 E-value=9.7e-71 Score=550.37 Aligned_cols=299 Identities=21% Similarity=0.345 Sum_probs=262.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHc--CCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~--hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
+.+||+|+|||||+|++|+|+|++ ||.++++.+++.+++|+++.+ .+.++ .+++++++++.++|+||+|+|+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~-----~~~~~-~v~~~~~~~~~~~D~vf~a~p~ 79 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF-----EGRDY-TVEELTEDSFDGVDIALFSAGG 79 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee-----cCcee-EEEeCCHHHHcCCCEEEECCCc
Confidence 347999999999999999999997 999999999999999999876 22233 2444555567889999999999
Q ss_pred cchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCC-------cEEecCCCh
Q 015441 140 GTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNA-------RLVANPGCY 211 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~-------~iVanPgC~ 211 (406)
++++++++.+ ++|++|||+|++|||++ ++| ||+||+|++.++.. ++|||||||
T Consensus 80 ~~s~~~~~~~~~~g~~VIDlS~~fR~~~--------~~p-----------~~vPEvn~~~i~~~~~~~~~~~iIanPgC~ 140 (344)
T PLN02383 80 SISKKFGPIAVDKGAVVVDNSSAFRMEE--------GVP-----------LVIPEVNPEAMKHIKLGKGKGALIANPNCS 140 (344)
T ss_pred HHHHHHHHHHHhCCCEEEECCchhhcCC--------CCc-----------eECCCcCHHHHHhhhhcccCCcEEECCCcH
Confidence 9999999976 78999999999999988 455 67777777776654 399999999
Q ss_pred HHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc------------HHHHhcCcccccCCcccch-------
Q 015441 212 PTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL------------YSEIAEGIYSYGVTRHRHV------- 272 (406)
Q Consensus 212 tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~------------~~e~~~ni~py~~~~h~h~------- 272 (406)
||+++|+|+||++++ .+++|+|+||||+||||++++++++ +.++.++.++|++..|+|.
T Consensus 141 ~t~~~laL~PL~~~~--~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~~~g~~ 218 (344)
T PLN02383 141 TIICLMAVTPLHRHA--KVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQENGYN 218 (344)
T ss_pred HHHHHHHHHHHHHcC--CeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccccCCCC
Confidence 999999999999985 4689999999999999999999865 5566778899999999998
Q ss_pred -hhhh--hhhcccc-CCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCC---CCccccc
Q 015441 273 -PEIE--QGLTGFA-SSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEK---GVVPRTH 345 (406)
Q Consensus 273 -pEi~--~~l~~i~-~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~---~~~P~~~ 345 (406)
||++ +++.+++ ++.++|+||||||||+|||++++|++++++++.++++++|+++ |||++.++ +.+|+|+
T Consensus 219 ~~E~~~~~e~~kil~~~~~~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~~~----p~v~v~~~~~~~~~p~p~ 294 (344)
T PLN02383 219 EEEMKLVKETRKIWNDDDVKVTATCIRVPVMRAHAESINLQFEKPLDEATAREILASA----PGVKIIDDRANNRFPTPL 294 (344)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHhcC----CCCEEEeCCCcCCCCccc
Confidence 9998 8887777 5778999999999999999999999999999999999999984 89999876 4599999
Q ss_pred cccCCCcEEEEEEEeCcC----CeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 346 NVRGSNYCLMNVFPDRIP----GRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 346 ~v~g~n~~~v~~~~~~~~----~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
++.|+|.|+||+.|.+.. +++++|+++|||+||||||||||||+|+
T Consensus 295 ~v~g~~~v~Vgr~r~~~~~~~~~~l~~~~~~DNL~kGAAg~AVq~an~~~ 344 (344)
T PLN02383 295 DASNKDDVAVGRIRQDISQDGNKGLDIFVCGDQIRKGAALNAVQIAELLL 344 (344)
T ss_pred eeCCCceEEEEEEEccCCCCCCCeEEEEEEEhHHHHHHHHHHHHHHHhhC
Confidence 999999999999975421 5899999999999999999999999985
No 11
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=8.6e-69 Score=538.65 Aligned_cols=315 Identities=23% Similarity=0.386 Sum_probs=277.2
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEE-eccCcCCccccccccC-----ccc--cCCCcccccCcccCCCCCEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLM-TADRKAGQSIGSVFPH-----LIS--QDLPTMVAVKDADFSNVDAV 133 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l-~s~~~~G~~i~~v~p~-----l~~--~~~~~~~~~~~~~~~~vDvV 133 (406)
||+||+|+||||++|++|+++|.+||+++++.+ .+++++|+.+..++|+ +.+ .++ .+...+++.+.++|+|
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~DvV 80 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADM-EVVSTDPEAVDDVDIV 80 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccce-EEEeCCHHHhcCCCEE
Confidence 458999999999999999999999999999999 7778899988877665 222 122 2333444556789999
Q ss_pred EEcCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhc-cCCcEEecCCCh
Q 015441 134 FCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDI-KNARLVANPGCY 211 (406)
Q Consensus 134 F~al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i-~~~~iVanPgC~ 211 (406)
|+|+|++++.++++++ ++|++|||+|++||+++ +.||..|++|+++ ||+||.+++++ ++.++|||||||
T Consensus 81 f~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~--------~~~~~~p~vn~~~-yg~~e~~~~~~~~~~~iVa~p~C~ 151 (349)
T PRK08664 81 FSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDP--------DVPLVIPEVNPEH-LELIEVQRKRRGWDGFIVTNPNCS 151 (349)
T ss_pred EEeCChhHHHHHHHHHHHCCCEEEECCchhcCCC--------CCCcCChhhCHHH-HcChHhhHhhccCCceEEEccCHH
Confidence 9999999999998876 78999999999999987 4789999999998 99999999888 778899999999
Q ss_pred HHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCc-ccchhhhhhhhccccC-----C
Q 015441 212 PTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGLTGFAS-----S 285 (406)
Q Consensus 212 tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~-h~h~pEi~~~l~~i~~-----~ 285 (406)
||+++++|+||++. ++++++|+++||+||+|+++.+ +.++++|++||..+. |||.||+++.|+.+.+ .
T Consensus 152 ~t~~~l~l~pL~~~---gl~~i~v~~~~g~SgaG~~~~~---~~~~~~N~~p~~~~~ehrh~~Ei~~~l~~~~~~~~~~~ 225 (349)
T PRK08664 152 TIGLVLALKPLMDF---GIERVHVTTMQAISGAGYPGVP---SMDIVDNVIPYIGGEEEKIEKETLKILGKFEGGKIVPA 225 (349)
T ss_pred HHHHHHHHHHHHHC---CCcEEEEEEEeccccCCcccch---hhhhhcCcccccCchhhhhhHHHHHHhhhcccccccCC
Confidence 99999999999984 5689999999999999999876 468999999999887 9999999998876522 3
Q ss_pred CceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcC----------CCCcEEecCCCCccccccccCCCcEEE
Q 015441 286 KVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYE----------HEEFVKLLEKGVVPRTHNVRGSNYCLM 355 (406)
Q Consensus 286 ~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~----------~~~fV~v~~~~~~P~~~~v~g~n~~~v 355 (406)
.++|+||||||||+|||++++|++++++++.+|++++|+++|+ ++|||++.+++.+|+|+++.|+|+ +|
T Consensus 226 ~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fv~~~~~~~~p~~~~~~~~~~-~~ 304 (349)
T PRK08664 226 DFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFKGLPQELGLPSAPKKPIILFEEPDRPQPRLDRDAGD-GM 304 (349)
T ss_pred CceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHHhccCccccccCCCCCCceEEEeCCCCCCceeEEcccCC-ce
Confidence 6789999999999999999999999999999999999999999 999999998877999999999998 77
Q ss_pred EEEEe---CcCC-eEEEEEEehhhhHhHHHHHHHHHHHHhCC
Q 015441 356 NVFPD---RIPG-RAIIISVIDNLVKGASGQALQNLNIMLGF 393 (406)
Q Consensus 356 ~~~~~---~~~~-~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~ 393 (406)
++..+ .+.+ ++++|+++|||+||||||||||||+|++.
T Consensus 305 ~~~v~~~~~~~~~~~~~~~~~DNl~kGaA~~avq~~n~~~~~ 346 (349)
T PRK08664 305 AVSVGRLREDGIFDIKFVVLGHNTVRGAAGASVLNAELLKKK 346 (349)
T ss_pred eEEECCeeecCCCCEEEEEEEhHHHHHHHHHHHHHHHHHHHc
Confidence 76665 3445 89999999999999999999999999864
No 12
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-69 Score=498.20 Aligned_cols=331 Identities=50% Similarity=0.788 Sum_probs=291.0
Q ss_pred CCcccccccCcccccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccC--
Q 015441 46 PTKSLQVEDGKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVK-- 123 (406)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~-- 123 (406)
+.+++++++....++++.+||+++||.||+|.+|++++.+||.+|+..+++++.+|+++. +|+++..++.. +...|
T Consensus 2 ss~s~r~s~~~~~~~~k~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~-~ytk~eiqy~~-lst~D~~ 79 (340)
T KOG4354|consen 2 SSMSFRVSASSSVKPEKDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLE-VYTKLEIQYAD-LSTVDAV 79 (340)
T ss_pred ccccccccCCcccccCCCceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCccc-Ccchhheeecc-cchhhHH
Confidence 456777788888899999999999999999999999999999999999999999999988 78776543221 11111
Q ss_pred -cccCCCCCEEEEcCCCcchHHHHhhCC--CC-CEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccc-hhh
Q 015441 124 -DADFSNVDAVFCCLPHGTTQEIIKGLP--KS-LKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEIS-RED 198 (406)
Q Consensus 124 -~~~~~~vDvVF~al~~~~s~~~~~~l~--~G-~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~-~~~ 198 (406)
-+.-..+|.+.+++|..+.+.++...+ .| .++||+|+|+|+.+ | .+++|||||+| |++
T Consensus 80 klee~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p-----------~------~~w~YGLpElndRe~ 142 (340)
T KOG4354|consen 80 KLEEPHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQP-----------H------KEWVYGLPELNDRED 142 (340)
T ss_pred HhhcCCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCc-----------c------hheeecCcccccHHH
Confidence 011135788899999999988887652 34 58999999988754 3 46799999999 999
Q ss_pred ccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchhhhhhh
Q 015441 199 IKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQG 278 (406)
Q Consensus 199 i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~ 278 (406)
|+++++|||||||+|+++|.|-||++..+ .+ -.|..++|+||||+++.+.+.+.+.++|+.||+.+.|+|.+||++.
T Consensus 143 i~na~~iaNPGCYaTgsQl~l~Pllk~i~--g~-p~ifgvSGySGAGtkpspkNd~~~l~nnlipY~ltdHiHerEIs~r 219 (340)
T KOG4354|consen 143 IKNARLIANPGCYATGSQLPLVPLLKAIL--GK-PEIFGVSGYSGAGTKPSPKNDYSELANNLIPYGLTDHIHEREISQR 219 (340)
T ss_pred HhhhhhccCCCcccccCcccchHHHHHhc--CC-cceeeeccccCCCCCCCCccCHHHHhcCCccccccccchhHhHHHh
Confidence 99999999999999999999999999743 22 2488999999999999999999999999999999999999999985
Q ss_pred hccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccccccCCCcEEEEEE
Q 015441 279 LTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVF 358 (406)
Q Consensus 279 l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~v~g~n~~~v~~~ 358 (406)
+ +..|+|+||..|+|+|+..||||.+++.++.+|+++.|++.|.+|+||+|+++ +|-.++++|+++|.||.+
T Consensus 220 ~------k~~VaF~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk~~YedE~lvhV~dd--vPlvkdv~gsh~v~~ggF 291 (340)
T KOG4354|consen 220 S------KVTVAFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYKTSYEDEELVHVLDD--VPLVKDVRGSHYVHMGGF 291 (340)
T ss_pred h------CCceeechhHHHHhhhceEEEEEeecCcccHHHHHHHHHhhccCcceeeeecc--ccceeccCCcceeEeccc
Confidence 4 45799999999999999999999999999999999999999999999999965 799999999999999999
Q ss_pred EeCcCC-eEEEEEEehhhhHhHHHHHHHHHHHHhCCCcccCCCCCCCCC
Q 015441 359 PDRIPG-RAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406 (406)
Q Consensus 359 ~~~~~~-~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~~e~~gl~~~~~~p 406 (406)
-++.++ |.+++++||||+||||+||+||+|+|+|++|++||...|+||
T Consensus 292 ~~~~~g~Ravii~tIDNLlKGAatQaLQNlNl~~GY~EyaGi~~~~l~~ 340 (340)
T KOG4354|consen 292 PDRIPGDRAVIISTIDNLLKGAATQALQNLNLMLGYPEYAGILHQPLFP 340 (340)
T ss_pred cCCCCCceEEEEEehhhhhhhHHHHHHHhhhhhhCCccccCcccCcCCC
Confidence 887765 999999999999999999999999999999999999999997
No 13
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-67 Score=523.82 Aligned_cols=296 Identities=21% Similarity=0.365 Sum_probs=259.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHc--CCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~--hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
|+||+|+|||||+|++|+|+|.+ ||.++++++++++++|+.+.. .+.++. +.+.+..+|.++|+||+|+|++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~-----~g~~i~-v~d~~~~~~~~vDvVf~A~g~g 74 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSF-----KGKELK-VEDLTTFDFSGVDIALFSAGGS 74 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeee-----CCceeE-EeeCCHHHHcCCCEEEECCChH
Confidence 47999999999999999999997 899999999999999988762 232332 3333344567899999999999
Q ss_pred chHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCC---cEEecCCChHHHHH
Q 015441 141 TTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNA---RLVANPGCYPTSIQ 216 (406)
Q Consensus 141 ~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~---~iVanPgC~tta~~ 216 (406)
.++++++++ ++|++|||+|++||+++ +.| |++||+|++.++.. ++|||||||||+++
T Consensus 75 ~s~~~~~~~~~~G~~VIDlS~~~R~~~--------~~p-----------~~lpevn~~~i~~~~~~~iVanp~C~~t~~~ 135 (334)
T PRK14874 75 VSKKYAPKAAAAGAVVIDNSSAFRMDP--------DVP-----------LVVPEVNPEALAEHRKKGIIANPNCSTIQMV 135 (334)
T ss_pred HHHHHHHHHHhCCCEEEECCchhhcCC--------CCC-----------eEcCCcCHHHHhhhhcCCeEECccHHHHHHH
Confidence 999999875 88999999999999986 222 88999999988765 79999999999999
Q ss_pred HHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCc-----------c----cccCCccc-------chhh
Q 015441 217 LPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGI-----------Y----SYGVTRHR-------HVPE 274 (406)
Q Consensus 217 l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni-----------~----py~~~~h~-------h~pE 274 (406)
++|+||+++ +++++++|+|+||+||||+++++++ +.++.+++ + +|++..|+ |.||
T Consensus 136 l~l~pL~~~--~~i~~i~vtt~~~~SGaG~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~~e 212 (334)
T PRK14874 136 VALKPLHDA--AGIKRVVVSTYQAVSGAGKAGMEEL-FEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGYTKE 212 (334)
T ss_pred HHHHHHHHh--cCceEEEEEEEechhhCChhhHHHH-HHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCCcHH
Confidence 999999998 4678899999999999999999986 88888777 3 68888888 9999
Q ss_pred ---hhhhhcccc-CCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCC---CCccccccc
Q 015441 275 ---IEQGLTGFA-SSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEK---GVVPRTHNV 347 (406)
Q Consensus 275 ---i~~~l~~i~-~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~---~~~P~~~~v 347 (406)
|++++.+++ ++.++|+||||||||+|||+.++|++++++++.+|++++|+++ +||++.++ +.+|+|+++
T Consensus 213 E~ki~~el~~il~~~~~~v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~~~----~~v~~~~~~~~~~~p~~~~v 288 (334)
T PRK14874 213 EMKMVNETKKILGDPDLKVSATCVRVPVFTGHSESVNIEFEEPISVEEAREILAEA----PGVVLVDDPENGGYPTPLEA 288 (334)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHcC----CCCEEEeCCcccCCCCceee
Confidence 999898887 4778999999999999999999999999999999999999984 89999873 348999999
Q ss_pred cCCCcEEEEEEEe-Cc-CCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 348 RGSNYCLMNVFPD-RI-PGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 348 ~g~n~~~v~~~~~-~~-~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
.|+|+|+||+++. .. ++++.+|+++|||+||||||||||||++
T Consensus 289 ~g~~~~~vg~~~~~~~~~~~l~~~~~~DNl~kGAA~~avq~~e~~ 333 (334)
T PRK14874 289 VGKDATFVGRIRKDLTVENGLHLWVVSDNLRKGAALNAVQIAELL 333 (334)
T ss_pred CCCcceEEeceEecCCCCCEEEEEEEEchHHHHHHHHHHHHHHHh
Confidence 9999999999654 33 5789999999999999999999999976
No 14
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-65 Score=508.97 Aligned_cols=300 Identities=20% Similarity=0.352 Sum_probs=250.3
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCce---EEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFG---IKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~e---lv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
.+.+||||+|||||+|++|+++|++||+++ +..++|++++|+++. |.+.++ .++.+++++|.++|+||+|+
T Consensus 3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~-----~~~~~l-~v~~~~~~~~~~~Divf~a~ 76 (347)
T PRK06728 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ-----FKGREI-IIQEAKINSFEGVDIAFFSA 76 (347)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCee-----eCCcce-EEEeCCHHHhcCCCEEEECC
Confidence 445799999999999999999999999998 888999999999985 344443 35556666778999999999
Q ss_pred CCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCC-cEEecCCChHHHH
Q 015441 138 PHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNA-RLVANPGCYPTSI 215 (406)
Q Consensus 138 ~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~-~iVanPgC~tta~ 215 (406)
|+++++++++.+ ++|++|||+|++|||++ ++| |++||+|++.++++ ++||||||+||++
T Consensus 77 ~~~~s~~~~~~~~~~G~~VID~Ss~fR~~~--------~vp-----------lvvPEvN~e~i~~~~~iIanPnC~tt~~ 137 (347)
T PRK06728 77 GGEVSRQFVNQAVSSGAIVIDNTSEYRMAH--------DVP-----------LVVPEVNAHTLKEHKGIIAVPNCSALQM 137 (347)
T ss_pred ChHHHHHHHHHHHHCCCEEEECchhhcCCC--------CCC-----------eEeCCcCHHHHhccCCEEECCCCHHHHH
Confidence 999999999976 78999999999999976 355 67777777777764 7999999999999
Q ss_pred HHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcc--cc--cCC-----------cccchhhhhh---
Q 015441 216 QLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIY--SY--GVT-----------RHRHVPEIEQ--- 277 (406)
Q Consensus 216 ~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~--py--~~~-----------~h~h~pEi~~--- 277 (406)
+++|+||++++ ++++|+|+||||+||||++++++ +..|+...+. |. +.+ ..+.+|+|..
T Consensus 138 ~laL~PL~~~~--~i~~v~V~t~qavSGAG~~gv~e-L~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~~ 214 (347)
T PRK06728 138 VTALQPIRKVF--GLERIIVSTYQAVSGSGIHAIQE-LKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTD 214 (347)
T ss_pred HHHHHHHHHcC--CccEEEEEEeecccccchhhHHH-HHHHHHHHhcCCCCccccccccccccCCceeccccCcCCcccc
Confidence 99999999985 56899999999999999999998 5566654322 11 111 1235677622
Q ss_pred ------------hhccccC-CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCC---CCc
Q 015441 278 ------------GLTGFAS-SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEK---GVV 341 (406)
Q Consensus 278 ------------~l~~i~~-~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~---~~~ 341 (406)
+..||++ +.++|++||+||||++||+.+++++|+++++.++++++|+++ +.|.+.++ +.|
T Consensus 215 ~g~t~EE~K~~~E~~KIL~~~~l~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~----~gi~~~d~p~~~~~ 290 (347)
T PRK06728 215 NDFTFEEVKMIQETKKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDA----PGVILQDNPSEQLY 290 (347)
T ss_pred CCccHHHHHHHHHHHHHhCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHcC----CCCEEeCCCcccCC
Confidence 2346775 779999999999999999999999999999999999999987 55666654 349
Q ss_pred cccccccCCCcEEEEEEEeCc--CCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 342 PRTHNVRGSNYCLMNVFPDRI--PGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 342 P~~~~v~g~n~~~v~~~~~~~--~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
|+|.++.|++.++|||+|.+. ++.+.+|+++||||||||+||||++|+++.
T Consensus 291 ptP~~~~g~~~v~VGRiR~d~~~~~~l~~w~~~DNlr~GAA~nav~iaE~l~~ 343 (347)
T PRK06728 291 PMPLYAEGKIDTFVGRIRKDPDTPNGFHLWIVSDNLLKGAAWNSVQIAETMVE 343 (347)
T ss_pred cCccccCCCCeEEEeCccccCCCCCeEEEEEEechHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998754 568999999999999999999999999864
No 15
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=7e-65 Score=508.02 Aligned_cols=296 Identities=22% Similarity=0.353 Sum_probs=253.4
Q ss_pred EEEEECcccHHHHHHHHHHHc--CCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 65 RIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~--hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
||+|+|||||+|++|+++|.+ ||.++++.+++.+++|+.+.. .+.++ .+.+++.++|.++|+||+|+|++.+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~-----~~~~~-~~~~~~~~~~~~~D~v~~a~g~~~s 74 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTF-----KGKEL-EVNEAKIESFEGIDIALFSAGGSVS 74 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeee-----CCeeE-EEEeCChHHhcCCCEEEECCCHHHH
Confidence 689999999999999999987 899999999999999998873 23232 2344445567889999999999999
Q ss_pred HHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCc---EEecCCChHHHHHHH
Q 015441 143 QEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNAR---LVANPGCYPTSIQLP 218 (406)
Q Consensus 143 ~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~---iVanPgC~tta~~l~ 218 (406)
+++++.+ ++|++|||+|++||+++ +.| |++||+|++.+++.+ +|||||||||+++++
T Consensus 75 ~~~a~~~~~~G~~VID~ss~~R~~~--------~~p-----------~~vpevN~~~i~~~~~~~iianp~C~~t~~~l~ 135 (339)
T TIGR01296 75 KEFAPKAAKCGAIVIDNTSAFRMDP--------DVP-----------LVVPEVNLEDLKEFNTKGIIANPNCSTIQMVVV 135 (339)
T ss_pred HHHHHHHHHCCCEEEECCHHHhCCC--------CCC-----------EEeCCcCHHHHhhCccCCEEECCCcHHHHHHHH
Confidence 9999876 88999999999999986 233 788888888886543 999999999999999
Q ss_pred HHHHHHccCCCcceEEEEEeeccCccCcchhhccc--------HHHHhc-------CcccccCC----cc-------cch
Q 015441 219 LVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL--------YSEIAE-------GIYSYGVT----RH-------RHV 272 (406)
Q Consensus 219 L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~--------~~e~~~-------ni~py~~~----~h-------~h~ 272 (406)
|+||++++ ++++++|+|+||+||+|+++++++. +.+..+ ++.||... .| +|.
T Consensus 136 l~pL~~~~--~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~~~~~ 213 (339)
T TIGR01296 136 LKPLHDEA--KIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFNDDGYT 213 (339)
T ss_pred HHHHHHhc--CccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCcccCCCC
Confidence 99999984 5689999999999999999999721 122222 56677665 56 899
Q ss_pred hh---hhhhhccccC-CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCC---CCccccc
Q 015441 273 PE---IEQGLTGFAS-SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEK---GVVPRTH 345 (406)
Q Consensus 273 pE---i~~~l~~i~~-~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~---~~~P~~~ 345 (406)
|| |.+++.++++ +.++|+||||||||+|||++++|++++++++.+|++++|+++ +||++.++ +.+|+|+
T Consensus 214 ~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~~~----~~v~v~~~~~~~~~p~~~ 289 (339)
T TIGR01296 214 KEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVRELLKNA----PGVVLIDDPSGNLYPTPL 289 (339)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHHHhcC----CCCEEeCCCccCCCCCCe
Confidence 99 8888888877 678899999999999999999999999999999999999854 99999877 4589999
Q ss_pred cccCCCcEEEEEEEe-C-cCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 346 NVRGSNYCLMNVFPD-R-IPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 346 ~v~g~n~~~v~~~~~-~-~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
++.|+|+|+||+.|. . .++++++|+++|||+||||||||||||++.
T Consensus 290 ~v~g~~~~~ig~~r~d~~~~~~l~~~~~~DNl~kGAA~~Avq~~e~~~ 337 (339)
T TIGR01296 290 EAVGEDEVFVGRIRKDLSDDNGLHLWVVADNLRKGAALNSVQIAELLI 337 (339)
T ss_pred EeCCCCeEEEEEEEecCCCCCEEEEEEEEhhHHHHHHHHHHHHHHHHh
Confidence 999999999999964 3 467999999999999999999999999875
No 16
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-62 Score=480.04 Aligned_cols=295 Identities=14% Similarity=0.179 Sum_probs=257.1
Q ss_pred ccEEEEECcccHHHHHHHHHHH--cCCCceEEEEecc-CcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTAD-RKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~--~hp~~elv~l~s~-~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
+++||| ||||.+|++++++|+ ++|.-+++.+.++ +++|+++.+ .++++. ++.+++++|.++|++|| ++.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f-----~g~~~~-V~~l~~~~f~~vDia~f-ag~ 74 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRF-----NNKAVE-QIAPEEVEWADFNYVFF-AGK 74 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEE-----CCEEEE-EEECCccCcccCCEEEE-cCH
Confidence 368999 999999999999998 5898899999998 999998874 565654 66777888999999999 999
Q ss_pred cchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHH
Q 015441 140 GTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLP 218 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~ 218 (406)
++++++++.+ ++|+.|||+|++|||++ ++|+++||+|++.+.. +....||+||||+|++++++
T Consensus 75 ~~s~~~ap~a~~aG~~VIDnSsa~Rmd~--------dVPLVVPEVN~e~l~~--------~~~~~IIanPNCsTi~l~~a 138 (322)
T PRK06901 75 MAQAEHLAQAAEAGCIVIDLYGICAALA--------NVPVVVPSVNDEQLAE--------LRQRNIVSLPDPQVSQLALA 138 (322)
T ss_pred HHHHHHHHHHHHCCCEEEECChHhhCCC--------CCCeecccCCHHHHhc--------CcCCCEEECCcHHHHHHHHH
Confidence 9999999975 78999999999999998 7999999999998743 12356999999999999999
Q ss_pred HHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhc--CcccccCCcc----cchhhhhh----hhccccCCCc-
Q 015441 219 LVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAE--GIYSYGVTRH----RHVPEIEQ----GLTGFASSKV- 287 (406)
Q Consensus 219 L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~--ni~py~~~~h----~h~pEi~~----~l~~i~~~~~- 287 (406)
|+||++. +++++++|+|||++||+|++|+++ +..|+.. |.+||....| +.+|+|.+ +..||+ +.+
T Consensus 139 L~pL~~~--~~l~rv~VsTyQavSGaG~~gv~e-L~~qt~~~~n~~~~~~~~~~iAFNviP~ig~~m~~EtrKIl-~~l~ 214 (322)
T PRK06901 139 LAPFLQE--QPLSQIFVTSLLPASYTDAETVKK-LAGQTARLLNGIPLDEEEQRLAFDVFPANAQNLELQLQKIF-PQLE 214 (322)
T ss_pred HHHHHHh--cCCcEEEEEeecchhhcCHhHHHH-HHHHHHHHhCCCCCCCCceeeeccccccCCccHHHHHHHHh-CCcc
Confidence 9999987 799999999999999999999998 5555543 5567655544 46787753 445788 777
Q ss_pred eEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccccc---c-cCCCc--EEEEEEEeC
Q 015441 288 TVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHN---V-RGSNY--CLMNVFPDR 361 (406)
Q Consensus 288 ~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~---v-~g~n~--~~v~~~~~~ 361 (406)
+|+.||+||||++||+.+++++++++++.++++++|+++ |.|.+.++. ||+|.+ + .|++. ++|||.|.
T Consensus 215 ~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~~~----~gv~l~d~~-yPtPi~~~~~~~g~d~vvv~Vgrir~- 288 (322)
T PRK06901 215 NVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQQN----NLLRYHEEK-LITPVLNGENENGEESVKLHISQLSA- 288 (322)
T ss_pred cEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhC----CCcEEeCCC-CCCCcccccccCCCCCccEEEEcccc-
Confidence 999999999999999999999999999999999999997 778888754 999987 5 79999 99999876
Q ss_pred cCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 362 IPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 362 ~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
.++.+.+|++.||||||||.||||++|++.
T Consensus 289 ~~~~l~lwvvaDNlRkGAA~NAVqIaE~l~ 318 (322)
T PRK06901 289 VENGVQFWSVADEQRFNLAFLAVKLLELIY 318 (322)
T ss_pred CCCEEEEEEEechHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999985
No 17
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=6.8e-62 Score=487.16 Aligned_cols=303 Identities=15% Similarity=0.211 Sum_probs=241.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCce---EEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFG---IKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~e---lv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
|+||||+|||||+|++|+++|++||+++ ++.+++.++.|+. +.|.+.........++++|.++|+||||+|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~-----~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~ 75 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAA-----PSFGGKEGTLQDAFDIDALKKLDIIITCQGG 75 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcc-----cccCCCcceEEecCChhHhcCCCEEEECCCH
Confidence 4799999999999999999888888877 8886665544443 3355544432222224567889999999999
Q ss_pred cchHHHHhhC-CCC--CEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCC-cEEecCCChHHHH
Q 015441 140 GTTQEIIKGL-PKS--LKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNA-RLVANPGCYPTSI 215 (406)
Q Consensus 140 ~~s~~~~~~l-~~G--~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~-~iVanPgC~tta~ 215 (406)
++++++++.+ ++| |.|||+|++|||++ ++|+++||+|++.+.+ ..... ++|+||||+||++
T Consensus 76 ~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~--------dvplvvPEvN~e~i~~-------~~~~g~~iIanPnC~tt~~ 140 (369)
T PRK06598 76 DYTNEVYPKLRAAGWQGYWIDAASTLRMKD--------DAIIILDPVNRDVIDD-------ALANGVKTFVGGNCTVSLM 140 (369)
T ss_pred HHHHHHHHHHHhCCCCeEEEECChHHhCCC--------CCcEEcCCcCHHHHHh-------hhhcCCCEEEcCChHHHHH
Confidence 9999999976 789 67999999999998 5777666666665421 01112 5899999999999
Q ss_pred HHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCc---------------------------ccc--cC
Q 015441 216 QLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGI---------------------------YSY--GV 266 (406)
Q Consensus 216 ~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni---------------------------~py--~~ 266 (406)
+++|+||++.+ .+++|+|+||||+||||++++++ +..|+...+ +++ ..
T Consensus 141 ~laL~PL~~~~--~i~~viVst~qavSGAG~~g~~e-L~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (369)
T PRK06598 141 LMALGGLFKND--LVEWVSVMTYQAASGAGARNMRE-LLTQMGALHGAVADELADPASAILDIDRKVTELMRSGDLPTDN 217 (369)
T ss_pred HHHHHHHHhcC--CceEEEEEeeecccccCHHHHHH-HHHHHHHHhhhccccccccchhhhhhhhhhhhhcccCCCCccc
Confidence 99999999974 56899999999999999999998 555554321 111 11
Q ss_pred C----cccchhhhhh---------------hhccccC---CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHH
Q 015441 267 T----RHRHVPEIEQ---------------GLTGFAS---SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLK 324 (406)
Q Consensus 267 ~----~h~h~pEi~~---------------~l~~i~~---~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~ 324 (406)
+ .++.+|+|.. +..||++ +.++|++||+||||++||+++++++|++++|.++++++|+
T Consensus 218 f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~gHs~sv~ve~~~~~~~~~i~~~L~ 297 (369)
T PRK06598 218 FGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQALTIKLKKDVPLAEIEEILA 297 (369)
T ss_pred CCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence 2 2345777642 2336776 6889999999999999999999999999999999999999
Q ss_pred HHcCCCCcEEecCCC-----CccccccccCCCcEEEEEEEeC--cCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 325 ISYEHEEFVKLLEKG-----VVPRTHNVRGSNYCLMNVFPDR--IPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 325 ~~y~~~~fV~v~~~~-----~~P~~~~v~g~n~~~v~~~~~~--~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
++. ++|.+.+++ .||+|.++.|++.++|||+|.+ .++.+.+|+++||||||||+||+|++|++.
T Consensus 298 ~~~---~gv~v~d~~~~~~~~yptP~~~~g~~~v~VGRiR~d~~~~~~l~lw~v~DnlrkGAA~~~~~i~~~~~ 368 (369)
T PRK06598 298 AHN---PWVKVVPNDREATMRELTPAAVTGTLTIPVGRLRKLNMGPEYLSAFTVGDQLLWGAAEPLRRMLRILL 368 (369)
T ss_pred hcC---CCEEEecCccccccCCCCccccCCCCcEEEecccccCCCCCEEEEEEeechhhhhhHHHHHHHHHHHh
Confidence 853 778888752 3999999999999999999865 357899999999999999999999999875
No 18
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-58 Score=453.70 Aligned_cols=304 Identities=22% Similarity=0.317 Sum_probs=242.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHc-CCCce-EEEEeccCcCCccccccccCccccCCCcccc-cCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFG-IKLMTADRKAGQSIGSVFPHLISQDLPTMVA-VKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~-hp~~e-lv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~-~~~~~~~~vDvVF~al~~ 139 (406)
|+||||+||||.||++++++|++ |+.++ +..++|.+++|+++.+ |.+..+...+. .+.++|.++|+||+|+|.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~----f~~~~~~v~~~~~~~~~~~~~Divf~~ag~ 76 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIE----FGGKSIGVPEDAADEFVFSDVDIVFFAAGG 76 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcccc----ccCccccCccccccccccccCCEEEEeCch
Confidence 47999999999999999999997 88887 7778899999998443 23322221111 345567899999999999
Q ss_pred cchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHH
Q 015441 140 GTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLP 218 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~ 218 (406)
.+|+++++.+ ++|+.|||+|++|||++ ++|+++||+|++.+- |..+ ++ +||+||||+|..++++
T Consensus 77 ~~s~~~~p~~~~~G~~VIdnsSa~Rm~~--------DVPLVVPeVN~~~l~---~~~~---rg-~IianpNCst~~l~~a 141 (334)
T COG0136 77 SVSKEVEPKAAEAGCVVIDNSSAFRMDP--------DVPLVVPEVNPEHLI---DYQK---RG-FIIANPNCSTIQLVLA 141 (334)
T ss_pred HHHHHHHHHHHHcCCEEEeCCcccccCC--------CCCEecCCcCHHHHH---hhhh---CC-CEEECCChHHHHHHHH
Confidence 9999999987 78999999999999998 699999999999852 2221 12 5999999999999999
Q ss_pred HHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhc----------------CcccccCCc--ccch---hhhhh
Q 015441 219 LVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAE----------------GIYSYGVTR--HRHV---PEIEQ 277 (406)
Q Consensus 219 L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~----------------ni~py~~~~--h~h~---pEi~~ 277 (406)
|+||+++ +++++++|+|||++||||++++++ +..++.. |+.||.... .-+. -.+..
T Consensus 142 L~PL~~~--~~i~~v~VsTyQAvSGAG~~~~~e-l~~q~~~~~~~~~i~~~~~~iAfNviP~I~~~~~ng~t~EE~K~~~ 218 (334)
T COG0136 142 LKPLHDA--FGIKRVVVSTYQAVSGAGAEGGVE-LAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTKEEWKIEA 218 (334)
T ss_pred HHHHHhh--cCceEEEEEEeehhhhcCccchhh-HHHHHhhhccCcccccccccccccccccCCccccCCccHHHHHHHH
Confidence 9999998 578999999999999999988887 4445442 444543220 0000 11222
Q ss_pred hhccccC-CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCC-cc-ccccccCCCcEE
Q 015441 278 GLTGFAS-SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGV-VP-RTHNVRGSNYCL 354 (406)
Q Consensus 278 ~l~~i~~-~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~-~P-~~~~v~g~n~~~ 354 (406)
+..||++ +.++|++||+||||++||+++++++++++++.+|+++.+-... |.+.+.++.. +| ++.++.|++.+.
T Consensus 219 Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~l~~a---p~v~v~~~~~~~P~~~~d~~g~~~v~ 295 (334)
T COG0136 219 ETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPSA---PGVVVVDNPEDRPQTPLDATGGDEVS 295 (334)
T ss_pred HHHHHhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHHhccC---CCcEEEeCCccCccChhhhcCCCceE
Confidence 3346777 8899999999999999999999999999999999997764443 5565555444 89 557899999999
Q ss_pred EEEEEeC--cCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 355 MNVFPDR--IPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 355 v~~~~~~--~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
|||+|.+ .++.+.+|++.||||||||+++||++|+++
T Consensus 296 VGRiR~d~~~~~~l~~~~v~dNl~~GAA~~av~iaE~L~ 334 (334)
T COG0136 296 VGRIRKDLSGPEGLKLWVVGDNLRKGAALNAVLIAELLL 334 (334)
T ss_pred EeEeeecCCCCCcEEEEEEechhhhhhHHHHHHHHHhhC
Confidence 9999976 345699999999999999999999999764
No 19
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=4e-57 Score=451.46 Aligned_cols=299 Identities=15% Similarity=0.183 Sum_probs=246.9
Q ss_pred cEEEEECcccHHHHHHHHHHHc---CCCceEEEEeccCcCCccccccccCccccCCCcccccCcc-cCCCCCEEEEcCCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLAN---HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDA-DFSNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~---hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~-~~~~vDvVF~al~~ 139 (406)
+||||+||||.||++++++|++ +|..+++.++++++.|+.+. +.+..+ .++.++++ +|.++|+||||+|.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~-----f~~~~~-~v~~~~~~~~~~~vDivffa~g~ 74 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPS-----FGGTTG-TLQDAFDIDALKALDIIITCQGG 74 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCC-----CCCCcc-eEEcCcccccccCCCEEEEcCCH
Confidence 4799999999999999999984 45567888888888888665 344444 35556554 78899999999999
Q ss_pred cchHHHHhhC-CCC--CEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcE--EecCCChHHH
Q 015441 140 GTTQEIIKGL-PKS--LKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARL--VANPGCYPTS 214 (406)
Q Consensus 140 ~~s~~~~~~l-~~G--~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~i--VanPgC~tta 214 (406)
++++++++.+ ++| |.|||+|++|||++ ++|+++||+|++.+.. + ....+ |+||||+|++
T Consensus 75 ~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~--------dVPLVVPeVN~~~i~~-------~-~~~gi~~ianPNCst~~ 138 (366)
T TIGR01745 75 DYTNEIYPKLRESGWQGYWIDAASSLRMKD--------DAVIILDPVNQDVITD-------G-LNNGIRTFVGGNCTVSL 138 (366)
T ss_pred HHHHHHHHHHHhCCCCeEEEECChhhhcCC--------CCCEEeCCcCHHHHHh-------H-HhCCcCeEECcCHHHHH
Confidence 9999999976 789 88999999999998 6999999999986532 1 12346 8999999999
Q ss_pred HHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcc---------------------------ccc--
Q 015441 215 IQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIY---------------------------SYG-- 265 (406)
Q Consensus 215 ~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~---------------------------py~-- 265 (406)
++++|+||++. +++++++|+|||++||||++++++ +..|+...+. ++.
T Consensus 139 l~~aL~pL~~~--~~i~~v~VsTyQAvSGAG~~g~~e-L~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~ 215 (366)
T TIGR01745 139 MLMSLGGLFAN--DLVEWVSVATYQAASGGGARHMRE-LLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRSGELPVD 215 (366)
T ss_pred HHHHHHHHHhc--cCccEEEEEechhhhhcCHHHHHH-HHHHHHHHhccccccccccchhhhhhccccccccccCCCCcc
Confidence 99999999998 689999999999999999999998 5556543211 111
Q ss_pred CCc----ccchhhhhh---------------hhccccC--CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHH
Q 015441 266 VTR----HRHVPEIEQ---------------GLTGFAS--SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLK 324 (406)
Q Consensus 266 ~~~----h~h~pEi~~---------------~l~~i~~--~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~ 324 (406)
.+. .+.+|+|.. +..||++ +.++|++||+||||++||+++++++++++++.++++++|+
T Consensus 216 ~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~gHs~sv~ve~~~~vs~e~i~~~L~ 295 (366)
T TIGR01745 216 NFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKDVSLETIEEIIR 295 (366)
T ss_pred cCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence 112 345677642 2336776 5799999999999999999999999999999999999999
Q ss_pred HHcCCCCcEEecCCC---C--ccccccccCCCcEEEEEEEeC--cCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 325 ISYEHEEFVKLLEKG---V--VPRTHNVRGSNYCLMNVFPDR--IPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 325 ~~y~~~~fV~v~~~~---~--~P~~~~v~g~n~~~v~~~~~~--~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
++. ++|.+.+++ . ||+|.++.|++.++|||+|.+ .++.+.+|+++||||||||++--..+|++
T Consensus 296 ~~~---~gv~v~d~~~~~~~~yptP~~~~G~d~v~VGRiR~d~~~~~~l~lw~v~DnlrkGAA~~~~~~~~~~ 365 (366)
T TIGR01745 296 AHN---PWVKVVPNDREITMRELTPAAVTGTLTIPVGRLRKLNMGPEYLSAFTVGDQLLWGAAEPLRRMLRIL 365 (366)
T ss_pred hCC---CCEEEecCCcccccCCcCCcccCCCCceEEeccccCCCCCCEEEEEEeechhhhhhHhHHHHHHHHh
Confidence 854 678888752 2 999999999999999999864 35789999999999999999999888876
No 20
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.2e-41 Score=312.60 Aligned_cols=315 Identities=20% Similarity=0.267 Sum_probs=248.1
Q ss_pred EEE-EECcccHHHHHHHHHHHcCCCceEEEE-eccCcCCccccccccCccccCCC------cccccCcccCCCCCEEEEc
Q 015441 65 RIG-LLGASGYTGAEIVRLLANHPYFGIKLM-TADRKAGQSIGSVFPHLISQDLP------TMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 65 kVa-IvGATG~vG~eLlrlL~~hp~~elv~l-~s~~~~G~~i~~v~p~l~~~~~~------~~~~~~~~~~~~vDvVF~a 136 (406)
|+| |+||||.|||+++-+|++||++++..+ +|.|++||++.+...|-...-+| .+++.+.+.|.++|+||+.
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~ecDIvfsg 84 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNECDIVFSG 84 (361)
T ss_pred cccceeeccchhHHHHHHHhccCCcceeeeecccccccCCceEecccchhcccccchhhhhhHhhcChhhcccccEEEec
Confidence 455 999999999999999999999999988 78999999998766553321111 1345566778999999999
Q ss_pred CCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccc-cchhhccCCcEEecCCChHHH
Q 015441 137 LPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTE-ISREDIKNARLVANPGCYPTS 214 (406)
Q Consensus 137 l~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE-~~~~~i~~~~iVanPgC~tta 214 (406)
++...+.++.+.+ ++|..|+|++..||+.+ ++|+++|++|+++..|+.- +...+....-||+||||+|.+
T Consensus 85 ldad~ageiek~f~eag~iiVsNaknyRre~--------~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNCSTa~ 156 (361)
T KOG4777|consen 85 LDADIAGEIEKLFAEAGTIIVSNAKNYRRED--------GVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNCSTAI 156 (361)
T ss_pred CCchhhhhhhHHHHhcCeEEEeCchhcccCC--------CCceEecccCHHHhhhheeccccCCCCCceEEecCCCCeee
Confidence 9999999999986 89999999999999998 7999999999999866421 112234456799999999999
Q ss_pred HHHHHHHHHHccCC-CcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchh-hhhhhhc----cccC----
Q 015441 215 IQLPLVPLIQANLI-QYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVP-EIEQGLT----GFAS---- 284 (406)
Q Consensus 215 ~~l~L~PL~~~~l~-~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~p-Ei~~~l~----~i~~---- 284 (406)
++++|+||+++ + .+++.+++|||+.||||.++..+. -++.+|+.||..+..+.+. |-...|. .+++
T Consensus 157 ~v~plkpL~~~--fgpi~~~~v~t~QAiSGAG~apgv~~--vdildnilp~iggee~k~ewet~kiL~s~n~~i~~~~l~ 232 (361)
T KOG4777|consen 157 CVMPLKPLHHH--FGPIKRMVVSTYQAISGAGAAPGVEL--VDILDNILPGIGGEENKFEWETAKILFSHNAPILDNGLN 232 (361)
T ss_pred EEeechhHHhh--ccchhhhhhhhhhhhccCCcCCCchH--HHHHHhhcCCCCccchhhhHHHHHhhhccCCcccccccc
Confidence 99999999998 5 578999999999999999776653 3778899999776543211 1111111 1111
Q ss_pred CCceEEEEEEEeeecceeEEEEEEEeCCC--CCHHHHHHHHHHH----------cCCCCcEEecCC--CCccccccccCC
Q 015441 285 SKVTVSFTPHLMPMIRGMQSTIYVEMAPG--VTIEDLYQQLKIS----------YEHEEFVKLLEK--GVVPRTHNVRGS 350 (406)
Q Consensus 285 ~~~~v~~t~~rVPv~rG~~~ti~v~l~~~--~s~eev~~~l~~~----------y~~~~fV~v~~~--~~~P~~~~v~g~ 350 (406)
.+..++..|.||||..||...+.+.++.+ .+.+|+.+.+.++ .+..+-|.+.++ +++|+|+.+++.
T Consensus 233 ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l~eyv~d~~klgc~sapkq~iyv~dd~apdrPqPrldrN~ 312 (361)
T KOG4777|consen 233 EEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLLFEYVLDENKLGCISAPKQGIYVIDDRAPDRPQPRLDRNK 312 (361)
T ss_pred HHHhhhhhcceeeEecCceEEEEEEeecCCCCcHHHHHHHHHhccCChhhcccccCCCCeEEEecCCCCCCCCccccccc
Confidence 23458999999999999999999999743 4789999988875 245677888876 789999999999
Q ss_pred Cc---EEEEEEEeCcCC--e---EEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 351 NY---CLMNVFPDRIPG--R---AIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 351 n~---~~v~~~~~~~~~--~---~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
+. |.|||+|.+... . +....++|..+||++.++||+++.++
T Consensus 313 d~gy~VsVGRIR~D~~~D~kfv~L~hnt~~gaag~G~l~aev~ia~~Ll 361 (361)
T KOG4777|consen 313 DDGYGVSVGRIRRDVSQDGKFVVLDHNTCGGAAGKGALLAEVQIAEMLL 361 (361)
T ss_pred CCCceeeeeeeecccccccceEEEEeeeehhhhcchhHHHHHHHHhhcC
Confidence 88 999999876432 2 34668888889999999999987653
No 21
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1.5e-33 Score=279.26 Aligned_cols=292 Identities=13% Similarity=0.126 Sum_probs=208.2
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-----ccccccccCccc-------------cCCCccc--c
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMV--A 121 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~--~ 121 (406)
|++||||+| .|++||.++|.+.+++++|++++++..+.. .+++++|+.|.+ +.+.... +
T Consensus 1 m~~~i~inG-fGRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~d 79 (331)
T PRK15425 1 MTIKVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERD 79 (331)
T ss_pred CceEEEEEe-eChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCC
Confidence 357999999 999999999998777899999999743322 367788877642 2222221 2
Q ss_pred cCcccCC--CCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhh
Q 015441 122 VKDADFS--NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (406)
Q Consensus 122 ~~~~~~~--~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~ 198 (406)
.++.+|. ++|+||+|+|.+.+++.++. +++|+++||+|++ +++ ++|+.+|++|.+.
T Consensus 80 p~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap--~~~--------~vp~vV~gVN~~~----------- 138 (331)
T PRK15425 80 PANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP--SKD--------NTPMFVKGANFDK----------- 138 (331)
T ss_pred hhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCC--CCC--------CCCEEEcccCHHH-----------
Confidence 3344576 99999999999999999875 6899999999998 455 4677777776653
Q ss_pred ccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc------HHHHhcCcccccCCcc---
Q 015441 199 IKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL------YSEIAEGIYSYGVTRH--- 269 (406)
Q Consensus 199 i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~------~~e~~~ni~py~~~~h--- 269 (406)
+...++||||+|+|++++++|+||++. ++++++.|+|+|++|++ |...+..+ .++++.|+.|...+..
T Consensus 139 ~~~~~IISnaSCtTn~Lapvlk~L~~~--fgI~~g~mTTvha~T~~-q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av 215 (331)
T PRK15425 139 YAGQDIVSNASCTTNCLAPLAKVINDN--FGIIEGLMTTVHATTAT-QKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAV 215 (331)
T ss_pred cCCCCEEECCCcHHHHHHHHHHHHHHh--CCeEEEEEEEEEeccCc-cccccCCCCcccccCcchhhceecccCCchHHH
Confidence 333679999999999999999999998 79999999999999999 76665432 1467788888765532
Q ss_pred -cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-ccc
Q 015441 270 -RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HNV 347 (406)
Q Consensus 270 -~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~v 347 (406)
+.+|++.+ +++.+++||||++||+.+++++++++++.||++++|+++..+ ++-.++.=.+-|-. .+.
T Consensus 216 ~kIlP~L~g----------kl~g~avRVPv~~gs~~dltv~l~~~~t~eev~~al~~aa~~-~l~gil~~~~~~~VS~D~ 284 (331)
T PRK15425 216 GKVLPELNG----------KLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEG-EMKGVLGYTEDDVVSTDF 284 (331)
T ss_pred HhhccccCC----------eEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhhc-cccccccccCCcEeeeec
Confidence 22343332 499999999999999999999999999999999999998543 44333321111322 133
Q ss_pred cCCCcEEE-E--EEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 348 RGSNYCLM-N--VFPDRIPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 348 ~g~n~~~v-~--~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
.|+.+-.| - -..--..+-+-+++--|| -+|=+-+-+..+..|
T Consensus 285 ~~~~~ssi~d~~~t~v~~~~~~k~~~WyDN-E~gys~r~~d~~~~~ 329 (331)
T PRK15425 285 NGEVCTSVFDAKAGIALNDNFVKLVSWYDN-ETGYSNKVLDLIAHI 329 (331)
T ss_pred CCCCcceEEEcccCEEecCCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 34332111 1 000001233457777888 566666666655544
No 22
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-33 Score=278.69 Aligned_cols=297 Identities=13% Similarity=0.119 Sum_probs=202.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC---CCceEEEEeccCcCC-----ccccccccCcc-------------ccCCCccc-
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH---PYFGIKLMTADRKAG-----QSIGSVFPHLI-------------SQDLPTMV- 120 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h---p~~elv~l~s~~~~G-----~~i~~v~p~l~-------------~~~~~~~~- 120 (406)
|+||||+|+ |+|||.++|+|.+. ++++++++++..... .++++.|+.|. ++.+....
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHE 79 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence 479999997 99999999998852 578898887532211 13344444332 33333222
Q ss_pred -ccCcccC--CCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccch
Q 015441 121 -AVKDADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISR 196 (406)
Q Consensus 121 -~~~~~~~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~ 196 (406)
+.++.+| .++|+||+|+|.+.++++++. +++|+++||+|+++|+++ +. .++|++|.+.. .
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~--------~~-~vV~gVN~~~~-~------ 143 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDL--------DA-TVVYGVNHDQL-R------ 143 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCC--------CC-eEEeCcCHHHh-C------
Confidence 2334467 599999999999999999986 589999999999998764 22 57777776643 1
Q ss_pred hhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHH-----HHhcCcccccCCcccc
Q 015441 197 EDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYS-----EIAEGIYSYGVTRHRH 271 (406)
Q Consensus 197 ~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~-----e~~~ni~py~~~~h~h 271 (406)
...+|||||+|+|++++++|+||+++ ++|+++.|+|+|++| +|++++|+++.. .++.|+.|.+.+.
T Consensus 144 ---~~~~IISnasCTTn~Lap~lk~L~~~--fgI~~~~mTT~ha~t-~~Q~~vD~~~~d~rr~r~~a~NiIP~~tga--- 214 (336)
T PRK13535 144 ---AEHRIVSNASCTTNCIIPVIKLLDDA--FGIESGTVTTIHSAM-NDQQVIDAYHPDLRRTRAASQSIIPVDTKL--- 214 (336)
T ss_pred ---cCCCEEECCchHHHHHHHHHHHHHHh--cCeeEEEEEEEEhhc-CCcchhhchhhccccccEeeeccccCccHH---
Confidence 12579999999999999999999998 799999999999999 889999986421 1234666653321
Q ss_pred hhhhhhhhccccC-CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-ccccC
Q 015441 272 VPEIEQGLTGFAS-SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HNVRG 349 (406)
Q Consensus 272 ~pEi~~~l~~i~~-~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~v~g 349 (406)
.+.+.++++ -+.+++.+++||||++||+.+++++++++++.|+++++|+++..+ ++-.++.-.+-|-. .+-.|
T Consensus 215 ----a~a~~kilP~l~gkv~~~avRVPv~~gs~~dl~v~~~~~~t~eei~~~l~~a~~~-~l~gil~~~~~~~VS~D~~~ 289 (336)
T PRK13535 215 ----AAGITRIFPQFNDRFEAISVRVPTINVTAIDLSVTVKKPVKVNEVNQLLQKAAQG-AFHGIVDYTELPLVSIDFNH 289 (336)
T ss_pred ----HhhhhhcccCCCCcEEEEEEEeCccCcEEEEEEEEECCCCCHHHHHHHHHHhhhc-cccccccccCCCccccccCC
Confidence 222333332 122499999999999999999999999999999999999998433 43333321111221 12333
Q ss_pred CCc-EEEEEEE--eCcCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 350 SNY-CLMNVFP--DRIPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 350 ~n~-~~v~~~~--~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
+.+ +-+-... --..+-+-+++--|| -+|=|-+-+..+..|.
T Consensus 290 ~~~s~i~d~~~t~~~~~~~~k~~~WyDN-E~gys~r~~d~~~~~~ 333 (336)
T PRK13535 290 DPHSAIVDGTQTRVSGAHLIKTLVWCDN-EWGFANRMLDTTLAMA 333 (336)
T ss_pred CCcceEEEcccCEEECCCEEEEEEEEcC-chHHHHHHHHHHHHHh
Confidence 332 1111110 001222346666799 5677777777766653
No 23
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=9.7e-33 Score=274.35 Aligned_cols=296 Identities=14% Similarity=0.133 Sum_probs=208.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-cCC-----ccccccccCcc-------------ccCCCccc--
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAG-----QSIGSVFPHLI-------------SQDLPTMV-- 120 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-~~G-----~~i~~v~p~l~-------------~~~~~~~~-- 120 (406)
|++||+|+|. |.+|+.++|.+.++++++++++.+.. +.. .+++++|+.|. ++.+....
T Consensus 1 m~ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 1 MTIKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNK 79 (334)
T ss_pred CCeEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecC
Confidence 3589999997 99999999998888999999998622 211 25677777664 23332221
Q ss_pred ccCcccCCCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhc
Q 015441 121 AVKDADFSNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDI 199 (406)
Q Consensus 121 ~~~~~~~~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i 199 (406)
+.++.+|.++|+||+|+|.+.++++++. +++|+++||+|++ |+++ ++|+++|++|.+..-+
T Consensus 80 ~~~~~~w~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap-~~d~--------d~p~vV~gVN~~~~~~--------- 141 (334)
T PRK08955 80 AIADTDWSGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAP-VKEE--------GVLNIVMGVNDHLFDP--------- 141 (334)
T ss_pred ChhhCCccCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCC-CCCC--------CCceEecccCHHHhcc---------
Confidence 2345568899999999999999999986 5899999999999 8875 4788888888764310
Q ss_pred cCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc-----HHHHhcCcccccCCcc----c
Q 015441 200 KNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL-----YSEIAEGIYSYGVTRH----R 270 (406)
Q Consensus 200 ~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~-----~~e~~~ni~py~~~~h----~ 270 (406)
...+|||||+|+|++++++|+||+++ ++|+++.|+|+|++|.. +...+..+ .++++.|+.|...+.. +
T Consensus 142 ~~~~IISnasCtTn~Lap~lk~L~~~--fgI~~~~mTTvha~t~~-q~lld~~~~d~r~~r~~a~NiIP~~tGaa~a~~k 218 (334)
T PRK08955 142 AIHPIVTAASCTTNCLAPVVKVIHEK--LGIKHGSMTTIHDLTNT-QTILDAPHKDLRRARACGMSLIPTTTGSATAITE 218 (334)
T ss_pred cCCCEEECCccHHHHHHHHHHHHHHh--cCeeEEEEEEEEeccCc-cccccCCCcccccchhheeccccccCCCccccce
Confidence 12579999999999999999999998 79999999999999976 44344222 1466778888654432 2
Q ss_pred chhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-ccccC
Q 015441 271 HVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HNVRG 349 (406)
Q Consensus 271 h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~v~g 349 (406)
.+|++.+ +++.+++||||++||+.+++++++++++.||++++|+++. +.++-.++.-.+-|-. .+-.|
T Consensus 219 vlP~L~g----------kl~~~avRVPv~~gs~~dl~v~~~~~~s~eev~~~l~~a~-~~~l~gil~~~~~~~vS~D~~~ 287 (334)
T PRK08955 219 IFPELKG----------KLNGHAVRVPLANASLTDCVFEVERDTTVEEVNALLKEAA-EGELKGILGYEERPLVSIDYKT 287 (334)
T ss_pred EccccCC----------cEEEEEEEeccCCeEEEEEEEEECCCCCHHHHHHHHHHhc-CCCcCceeccccCCcccceeCC
Confidence 2343332 4999999999999999999999999999999999999873 4344333321111211 12223
Q ss_pred CCcEEE---EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 350 SNYCLM---NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 350 ~n~~~v---~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
+.+--| ....--..+-+-+++--|| -+|=|-+-+-.+..|.
T Consensus 288 ~~~s~i~d~~~t~~~~~~~~k~~~WyDN-E~gys~r~~dl~~~~~ 331 (334)
T PRK08955 288 DPRSSIVDALSTMVVNGTQVKLYAWYDN-EWGYANRTAELARKVG 331 (334)
T ss_pred CCchHheehhcCEEecCCEEEEEEEeCC-chhHHHHHHHHHHHHh
Confidence 321111 0000001233457777999 5666766676666553
No 24
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=2.6e-32 Score=270.65 Aligned_cols=295 Identities=13% Similarity=0.133 Sum_probs=213.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC--CCceEEEEeccCcCC-----ccccccccCccc-------------cCCCccccc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMVAV 122 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~~~ 122 (406)
|+||||+| .|+|||.++|.+.+. ++++++++++..... .+++++|+.|.+ +.+......
T Consensus 1 ~~ki~ING-fGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 1 MIRVAING-FGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR 79 (337)
T ss_pred CeEEEEEc-cChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcC
Confidence 68999999 999999999987755 689999998743222 266777777642 233323323
Q ss_pred C--cccCC--CCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchh
Q 015441 123 K--DADFS--NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRE 197 (406)
Q Consensus 123 ~--~~~~~--~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~ 197 (406)
+ +.+|. ++|+||+|+|.+.+++.++. +++|+++||+|++ |.++ ++|.++|++|.+.. .
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap-~~d~--------d~p~vV~gVN~~~~-~------- 142 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAP-GKGE--------DIGTYVVGVNHHEY-D------- 142 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCC-CCCC--------CCceEecccCHHHh-c-------
Confidence 2 33565 89999999999999998875 5889999999995 7654 46888887776632 1
Q ss_pred hccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCcc---
Q 015441 198 DIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTRH--- 269 (406)
Q Consensus 198 ~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~h--- 269 (406)
. ...++||||+|+|++++++|+||+++ ++|+++.++|+|++|+.+ +.+|.+|. +.++.|++|...+..
T Consensus 143 ~-~~~~IISnasCTTn~Lap~lkvL~~~--fgI~~~~mTTiha~T~~q-~~~D~~~~d~r~~raaa~NiIPt~tGaakav 218 (337)
T PRK07403 143 H-EDHNIISNASCTTNCLAPIAKVLHDN--FGIIKGTMTTTHSYTGDQ-RILDASHRDLRRARAAAVNIVPTSTGAAKAV 218 (337)
T ss_pred c-CCCCEEECCcHHHHHHHHHHHHHHHh--cCeeEEEEEEEeeecCCc-ccccccccccccccccccccccCCcchhhhh
Confidence 0 13579999999999999999999998 799999999999999997 67776543 356789999877653
Q ss_pred -cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-ccc
Q 015441 270 -RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HNV 347 (406)
Q Consensus 270 -~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~v 347 (406)
+++|++++ +++.+++|||+..||+.+++++++++++.|||+++|+++.++ ++-.++.=.+-|-. .+-
T Consensus 219 ~~vlP~L~g----------ki~g~avRVPt~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~-~l~gil~~~~~~~VS~D~ 287 (337)
T PRK07403 219 ALVIPELKG----------KLNGIALRVPTPNVSVVDLVVQVEKRTITEQVNEVLKDASEG-PLKGILEYSDLPLVSSDY 287 (337)
T ss_pred hhcCcccCC----------cEEEEEEEeccCCcEEEEEEEEECCCCCHHHHHHHHHHHhhC-ccccccCeecCCEeeeee
Confidence 35666654 589999999999999999999999999999999999998643 43333321111222 123
Q ss_pred cCCCcEEE-EEEEe--CcCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 348 RGSNYCLM-NVFPD--RIPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 348 ~g~n~~~v-~~~~~--~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
.|+.+-.| -.... -..+-+-+++--|| -.|=|-+-+..++.|.
T Consensus 288 ~~~~~s~i~D~~~t~v~~~~~~k~~~WyDN-E~Gys~r~~dl~~~~~ 333 (337)
T PRK07403 288 RGTDASSIVDASLTMVMGGDMVKVIAWYDN-EWGYSQRVVDLAELVA 333 (337)
T ss_pred cCCCCCEEEEcccCEEecCCEEEEEEEecC-chhHHHHHHHHHHHHH
Confidence 33322111 11000 01222447777999 6777777787777764
No 25
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=1.9e-32 Score=271.90 Aligned_cols=234 Identities=13% Similarity=0.106 Sum_probs=179.3
Q ss_pred EEEEECcccHHHHHHHHHHHcC---CCceEEEEeccCcCC-----ccccccccCcc-------------ccCCCccc--c
Q 015441 65 RIGLLGASGYTGAEIVRLLANH---PYFGIKLMTADRKAG-----QSIGSVFPHLI-------------SQDLPTMV--A 121 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~h---p~~elv~l~s~~~~G-----~~i~~v~p~l~-------------~~~~~~~~--~ 121 (406)
||||+|+ |.||+.++|+|.+. +.++++++.+..+.. .+++++|+.|. ++.+..+. +
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 6999996 99999999998864 469999998643321 24566666652 23333221 2
Q ss_pred cCcccC--CCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhh
Q 015441 122 VKDADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (406)
Q Consensus 122 ~~~~~~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~ 198 (406)
.++.+| .++|+||+|+|...++++++. +++|+++||+|+++|+++ ++ .++|++|.+..-
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~--------~~-~vV~gVN~~~~~--------- 141 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDL--------DA-TIVYGVNQQDLS--------- 141 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCC--------Cc-eEEeccCHHHhC---------
Confidence 234457 589999999999999999875 589999999999998754 23 567777766431
Q ss_pred ccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHH-----HHhcCcccccCCcccchh
Q 015441 199 IKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYS-----EIAEGIYSYGVTRHRHVP 273 (406)
Q Consensus 199 i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~-----e~~~ni~py~~~~h~h~p 273 (406)
...+|||||+|+|++++++|+||+++ ++++++.|+|+|++|+ |++++|+++.. ....|+.|.+.+.++.
T Consensus 142 -~~~~IISnasCtTn~lap~lk~L~~~--fgI~~~~~tTvha~t~-~q~~vD~~~~d~r~~r~a~~NiIP~~t~~a~a-- 215 (325)
T TIGR01532 142 -AEHTIVSNASCTTNCIVPLIKLLDDA--IGIESGTITTIHSAMN-DQQVIDAYHHDLRRTRAASQSIIPVDTKLARG-- 215 (325)
T ss_pred -CCCCEEeCCCcHHHHHHHHHHHHHHh--cCeeEEEEEEEEhhcC-CccccccchhhccccchHhhCeeeCCccHHHH--
Confidence 12579999999999999999999998 7999999999999999 89999986431 2334888875544321
Q ss_pred hhhhhhccccCCCc--eEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCC
Q 015441 274 EIEQGLTGFASSKV--TVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEH 329 (406)
Q Consensus 274 Ei~~~l~~i~~~~~--~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~ 329 (406)
+.+++ +.+ +++.+++||||++||+.+++++++++++.|+++++|+++..+
T Consensus 216 -----~~kil-P~L~gkl~~~avRVPv~~~s~~dl~v~~~~~~~~eev~~~l~~a~~~ 267 (325)
T TIGR01532 216 -----IERLF-PEFAGRFEAIAVRVPTVNVTALDLSVTTKRDVKANEVNRVLREAAQG 267 (325)
T ss_pred -----HHHhC-cccCCeEEEEEEEecccCcEEEEEEEEECCCCCHHHHHHHHHHhhcc
Confidence 22222 222 599999999999999999999999999999999999998543
No 26
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=7.4e-32 Score=271.66 Aligned_cols=293 Identities=12% Similarity=0.118 Sum_probs=207.8
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcC--CCceEEEEeccCcCC-----ccccccccCcc--------------ccCCCc
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAG-----QSIGSVFPHLI--------------SQDLPT 118 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~~~~G-----~~i~~v~p~l~--------------~~~~~~ 118 (406)
.+|++||||+|+ |.|||.++|+|.+. |.++++++++..... .++++.|+.|. ++.+..
T Consensus 57 ~~~~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v 135 (395)
T PLN03096 57 TEAKIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKV 135 (395)
T ss_pred cccccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEE
Confidence 356689999997 99999999998854 889999887633211 14455544432 233332
Q ss_pred ccc--cCcccC--CCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccc
Q 015441 119 MVA--VKDADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTE 193 (406)
Q Consensus 119 ~~~--~~~~~~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE 193 (406)
... .++.+| .++|+||+|+|.+.+++.++. +++|+++||+|++ +++ +.|.++|++|.+.. .
T Consensus 136 ~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap--~~~--------~~ptvV~GVN~~~l-~--- 201 (395)
T PLN03096 136 VSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP--GKG--------DIPTYVVGVNADDY-K--- 201 (395)
T ss_pred EEcCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCC--CCC--------CCCeEeCccCHHHh-c---
Confidence 222 234457 589999999999999999875 6899999999998 444 46778887776632 1
Q ss_pred cchhhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCc
Q 015441 194 ISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTR 268 (406)
Q Consensus 194 ~~~~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~ 268 (406)
...+|||||+|+|++++++++||+++ ++|+++.|+|+|++|+. +...|..|. ++++.|+.|...+.
T Consensus 202 ------~~~~IISnaSCTTn~LAp~lkvL~~~--fGI~~g~mTTiHa~T~~-Q~llD~~~~d~rr~Raaa~NiIPtsTGa 272 (395)
T PLN03096 202 ------HSDPIISNASCTTNCLAPFVKVLDQK--FGIIKGTMTTTHSYTGD-QRLLDASHRDLRRARAAALNIVPTSTGA 272 (395)
T ss_pred ------cCCCEEECCchHHHHHHHHHHHHHHh--cCeeEEEEEEEEccccc-cccccCCCCccccchhhhccccccCCCc
Confidence 12579999999999999999999998 79999999999999999 555564332 56778999987664
Q ss_pred c----cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCc---EEecCCCCc
Q 015441 269 H----RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEF---VKLLEKGVV 341 (406)
Q Consensus 269 h----~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~f---V~v~~~~~~ 341 (406)
. +.+|++.+ +++.+++||||++||+.+++++++++++.|+++++|+++.++ ++ +.+.++
T Consensus 273 akav~kVlP~L~g----------kl~g~avRVPv~~gs~~dltv~~~~~~t~eev~~al~~aa~~-~l~gil~~~~~--- 338 (395)
T PLN03096 273 AKAVALVLPNLKG----------KLNGIALRVPTPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEK-ELKGILAVCDE--- 338 (395)
T ss_pred chhhhhcccccCC----------cEEEEEEEccccceEEEEEEEEECCCCCHHHHHHHHHhhhhc-cccceEEEeCC---
Confidence 3 33455443 499999999999999999999999999999999999998543 32 233322
Q ss_pred ccc-ccccCCCcEEE-EE-E-EeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 342 PRT-HNVRGSNYCLM-NV-F-PDRIPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 342 P~~-~~v~g~n~~~v-~~-~-~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
|-. .+-.|..+-.| .. . .--..+-+-+++--|| -+|=|-+-+..+..|.
T Consensus 339 p~VS~Df~~~~~Ssi~d~~~t~v~~~~~vKv~~WYDN-E~Gys~r~~dl~~~~~ 391 (395)
T PLN03096 339 PLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDN-EWGYSQRVVDLADIVA 391 (395)
T ss_pred CEeeeeecCCCCceEEEcccCEEeCCCEEEEEEEecC-chhHHHHHHHHHHHHH
Confidence 221 12333332222 10 0 0001223347777899 5777777777777664
No 27
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=6.6e-32 Score=268.03 Aligned_cols=293 Identities=15% Similarity=0.120 Sum_probs=206.6
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc-CcCC-----ccccccccCccc-------------cCCCccccc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD-RKAG-----QSIGSVFPHLIS-------------QDLPTMVAV 122 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~-~~~G-----~~i~~v~p~l~~-------------~~~~~~~~~ 122 (406)
|++||||+| .|++||.++|.+.+.++++++++++. .+.. .+++++|+.|.+ +.+..+..-
T Consensus 1 m~~ki~ING-fGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~ 79 (337)
T PTZ00023 1 MVVKLGING-FGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEK 79 (337)
T ss_pred CceEEEEEC-cChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCC
Confidence 558999999 99999999999887789999999872 2221 367888887742 222222222
Q ss_pred Ccc--cC--CCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchh
Q 015441 123 KDA--DF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRE 197 (406)
Q Consensus 123 ~~~--~~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~ 197 (406)
++. .| .++|+||+|+|.+.++++++. +++|+++||+|+ ++++ ++|+++|++|.+...
T Consensus 80 dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSa--p~~~--------~vp~vV~gVN~~~~~-------- 141 (337)
T PTZ00023 80 DPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSA--PPKD--------DTPIYVMGVNHTQYD-------- 141 (337)
T ss_pred ChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCC--CCCC--------CCCeEEcccCHHHhC--------
Confidence 222 35 389999999999999999986 589999999999 4665 478888888877431
Q ss_pred hccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc------H--HHHhcCcccccCCcc
Q 015441 198 DIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL------Y--SEIAEGIYSYGVTRH 269 (406)
Q Consensus 198 ~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~------~--~e~~~ni~py~~~~h 269 (406)
...+|||||+|+|++++++|+||+++ ++|+++.++|+|++|.. |...+..+ . ++++.|+.|...+..
T Consensus 142 --~~~~IISnasCTTn~Lap~lk~L~~~--fgI~~~~~TT~ha~T~~-Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaa 216 (337)
T PTZ00023 142 --KSQRIVSNASCTTNCLAPLAKVVNDK--FGIVEGLMTTVHASTAN-QLTVDGPSKGGKDWRAGRCAGVNIIPASTGAA 216 (337)
T ss_pred --CCCCEEECCccHHHHHHHHHHHHHHh--cCeeEEEEEEEEecCCC-ceecCCcCcccCCCcccceeeccccccCCCcc
Confidence 12579999999999999999999998 79999999999999965 43444321 1 356778888765532
Q ss_pred ----cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-
Q 015441 270 ----RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT- 344 (406)
Q Consensus 270 ----~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~- 344 (406)
+.+||++. +++.+++|||+++||+.+++++++++++.||++++|+++.++ ++-.++.=.+-|-.
T Consensus 217 kav~kVlPeL~g----------kl~g~avRVPt~~~s~~dltv~l~k~vt~eev~~al~~aa~~-~l~gil~~~~~~~VS 285 (337)
T PTZ00023 217 KAVGKVIPELNG----------KLTGMAFRVPVPDVSVVDLTCKLAKPAKYEEIVAAVKKAAEG-PLKGILGYTDDEVVS 285 (337)
T ss_pred hhhhheecccCC----------cEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhcc-cccCCcCccCCCeee
Confidence 23344432 599999999999999999999999999999999999998543 44333321111222
Q ss_pred ccccCCCc-EEEEEEEe--CcCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 345 HNVRGSNY-CLMNVFPD--RIPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 345 ~~v~g~n~-~~v~~~~~--~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
.+-.|+.+ +-+-.... -..+-+-+++--|| -.|=|-+-+..+..|
T Consensus 286 ~D~~~~~~s~i~d~~~t~v~~~~~~k~~~WyDN-E~gys~r~~d~~~~~ 333 (337)
T PTZ00023 286 SDFVHDKRSSIFDVKAGIALNDTFVKLVSWYDN-EWGYSNRLLDLAHYI 333 (337)
T ss_pred eecCCCCCCeEEEcccCeEecCCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 12333332 22211100 01233447777899 566666666666655
No 28
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=9.1e-32 Score=267.14 Aligned_cols=294 Identities=12% Similarity=0.149 Sum_probs=211.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-----ccccccccCccc-------------cCCCccc--c
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMV--A 121 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~--~ 121 (406)
|++||||+| .|++||.++|.+.+.+++|++++++..+.. .+++++|+.|.+ +.+.... +
T Consensus 1 m~~ki~ING-fGRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~d 79 (343)
T PRK07729 1 MKTKVAING-FGRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRD 79 (343)
T ss_pred CceEEEEEC-cChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCC
Confidence 558999999 999999999998777899999998743322 267777777642 2222222 2
Q ss_pred cCcccC--CCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhh
Q 015441 122 VKDADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (406)
Q Consensus 122 ~~~~~~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~ 198 (406)
.++.+| .++|+||+|+|.+.++++++. +++|+++||+|+. |+++ +.|+ ++++|.+ .
T Consensus 80 p~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap-~~d~--------d~~l-V~gVN~~-----------~ 138 (343)
T PRK07729 80 PKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAP-GKNE--------DVTI-VVGVNED-----------Q 138 (343)
T ss_pred hhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCC-CCCC--------CCcE-EecccHH-----------H
Confidence 223457 589999999999999999876 5899999999975 7764 3454 4466555 3
Q ss_pred cc--CCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCcc--
Q 015441 199 IK--NARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTRH-- 269 (406)
Q Consensus 199 i~--~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~h-- 269 (406)
+. ..++||||+|+|++++++|+||+++ ++|+++.++|+|++|+. ++.+|+++. +....|+.|.+.+..
T Consensus 139 ~~~~~~~IISnaSCTTn~Lap~lk~L~~~--fgI~~~~mTTiha~T~~-Q~~~D~~~~d~rr~R~a~~niiPtstgaa~a 215 (343)
T PRK07729 139 LDIEKHTIISNASCTTNCLAPVVKVLDEQ--FGIENGLMTTVHAYTND-QKNIDNPHKDLRRARACGQSIIPTTTGAAKA 215 (343)
T ss_pred hccCCCCEEECCchHHHHHHHHHHHHHHh--cCeeEEEEEEEecccCc-ccccccchhhhhcccccccceecCCCcchhh
Confidence 33 3579999999999999999999998 79999999999999996 888887642 124568888765542
Q ss_pred --cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-cc
Q 015441 270 --RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HN 346 (406)
Q Consensus 270 --~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~ 346 (406)
+.+|++.+ +++.+++|||+++||+.+++++++++++.|+|+++|+++.++ ++-.++.=.+.|-. .+
T Consensus 216 i~~viP~l~g----------kl~g~avRVPt~~~s~~dltv~l~k~~t~eev~~~l~~a~~~-~l~gil~~~~~~~VS~D 284 (343)
T PRK07729 216 LAKVLPHLNG----------KLHGMALRVPTPNVSLVDLVVDVKRDVTVEEINEAFKTAANG-ALKGILEFSEEPLVSID 284 (343)
T ss_pred HHHhccccCC----------eEEEEEEEeeecCeEEEEEEEEECCCCCHHHHHHHHHHHhhC-chhhccCccCCCccccc
Confidence 45777765 689999999999999999999999999999999999998543 44434331111221 13
Q ss_pred ccCCCc-EEEEEEEeC--cCCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 347 VRGSNY-CLMNVFPDR--IPGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 347 v~g~n~-~~v~~~~~~--~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
-.|..+ +-+-..... ..+-+-+++--|| -.|=|-+-+-.+..|..
T Consensus 285 ~~~~~~s~i~D~~~t~v~~~~~~K~~~WYDN-E~Gys~r~~dl~~~~~~ 332 (343)
T PRK07729 285 FNTNTHSAIIDGLSTMVMGDRKVKVLAWYDN-EWGYSCRVVDLVTLVAD 332 (343)
T ss_pred cCCCCcceEEEcccCeEecCCEEEEEEEecC-chHHHHHHHHHHHHHHh
Confidence 334332 111111000 1233457777999 56777777777766643
No 29
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=6.3e-31 Score=261.78 Aligned_cols=296 Identities=13% Similarity=0.123 Sum_probs=205.8
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-cCC-----ccccccccCccc---------------cCCCcc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAG-----QSIGSVFPHLIS---------------QDLPTM 119 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-~~G-----~~i~~v~p~l~~---------------~~~~~~ 119 (406)
.+++||||+| .|++|+..+|.+.++|+++++++++.. ... .+++++|+.|.+ +.+...
T Consensus 3 ~~~lrVaI~G-~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~ 81 (338)
T PLN02358 3 DKKIRIGING-FGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 81 (338)
T ss_pred CCceEEEEEe-ecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEE
Confidence 3468999999 999999999998888999999998732 211 356777776642 112111
Q ss_pred cccC--cccC--CCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhcccccc
Q 015441 120 VAVK--DADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEI 194 (406)
Q Consensus 120 ~~~~--~~~~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~ 194 (406)
...+ +.+| .++|+||+|+|.+.++++++. +++|+++||+|+.. + ++|+++|++|.+.. .
T Consensus 82 ~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~---~--------dvp~iV~gVN~~~~-~---- 145 (338)
T PLN02358 82 GIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPS---K--------DAPMFVVGVNEHEY-K---- 145 (338)
T ss_pred EcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCC---C--------CCCeEecCcCHHHh-C----
Confidence 1111 3346 589999999999999999986 58999999999652 3 46778888877643 1
Q ss_pred chhhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc------HHHHhcCcccccCCc
Q 015441 195 SREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL------YSEIAEGIYSYGVTR 268 (406)
Q Consensus 195 ~~~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~------~~e~~~ni~py~~~~ 268 (406)
...++||||+|+|++++++|+||+++ ++|+++.|+|+|++||+++ ..+..+ .++++.|+.|...+.
T Consensus 146 -----~~~~IISnasCTTn~Lap~lk~L~~~--fgI~~~~mTTiha~T~~q~-l~d~~~~~d~r~~ra~a~NiIP~~tGa 217 (338)
T PLN02358 146 -----SDLDIVSNASCTTNCLAPLAKVINDR--FGIVEGLMTTVHSITATQK-TVDGPSMKDWRGGRAASFNIIPSSTGA 217 (338)
T ss_pred -----CCCCEEECCCchHHHHHHHHHHHHHh--cCeeEEEEEEEEeecCccc-ccCCCCCccccCccccccccccCCcch
Confidence 13579999999999999999999998 7999999999999999965 455432 146778888886553
Q ss_pred ccchhhhhhhhccccC-CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-cc
Q 015441 269 HRHVPEIEQGLTGFAS-SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HN 346 (406)
Q Consensus 269 h~h~pEi~~~l~~i~~-~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~ 346 (406)
.+ + +.++++ -+.+++.+++|||+++||+.+++++++++++.||++++|+++..+ ++-.++.-.+.|-. .+
T Consensus 218 ak---a----~~kIlP~l~gkl~g~avRVPv~~gs~~dl~v~~~~~~t~eev~~~l~~a~~~-~l~gil~~~~~~~VS~D 289 (338)
T PLN02358 218 AK---A----VGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEG-KLKGILGYTEDDVVSTD 289 (338)
T ss_pred hh---h----hhhccccCCCcEEEEEEEeeEcCeeEEEEEEEECCCCCHHHHHHHHHHHhhc-cccCcccccCCceeeee
Confidence 21 1 222332 122599999999999999999999999999999999999998543 33333321111222 12
Q ss_pred ccCCCc-EEEEEEE--eCcCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 347 VRGSNY-CLMNVFP--DRIPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 347 v~g~n~-~~v~~~~--~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
-.|+.+ +-+-... .-..+-+-+++--|| -+|=|-+-+..+..|
T Consensus 290 ~~~~~~s~i~d~~~t~~~~~~~vk~~~WyDN-E~gys~r~~dl~~~~ 335 (338)
T PLN02358 290 FVGDNRSSIFDAKAGIALSDKFVKLVSWYDN-EWGYSSRVVDLIVHM 335 (338)
T ss_pred cCCCCcceEEEcccCeEecCCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 233332 2111100 001233447777899 567777777766655
No 30
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=99.98 E-value=5.4e-31 Score=267.11 Aligned_cols=294 Identities=11% Similarity=0.111 Sum_probs=217.0
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcC--CCceEEEEeccCcCC-----ccccccccCccc--------------cCCCcc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAG-----QSIGSVFPHLIS--------------QDLPTM 119 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~~~~G-----~~i~~v~p~l~~--------------~~~~~~ 119 (406)
+|++||||+| .|+|||.++|++... +++|++++++..... .+++++|+.|.+ +.+...
T Consensus 73 ~~~ikVgING-FGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~ 151 (442)
T PLN02237 73 VAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVV 151 (442)
T ss_pred cceEEEEEEC-CChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEE
Confidence 4679999999 999999999987644 789999998743322 267777777642 122212
Q ss_pred cccC--cccC--CCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhcccccc
Q 015441 120 VAVK--DADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEI 194 (406)
Q Consensus 120 ~~~~--~~~~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~ 194 (406)
..-+ +.+| .++|+||+|+|.+.+++.++. +++|+++||+| ++|.++ ++|.++|++|.+..-+
T Consensus 152 ~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS-AP~~d~--------dvptvV~GVN~~~~~~---- 218 (442)
T PLN02237 152 SNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT-APAKGA--------DIPTYVVGVNEDDYDH---- 218 (442)
T ss_pred EcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC-CCCCCC--------CCceEecccCHHHhCc----
Confidence 1112 3457 589999999999999998875 68999999999 678764 3678888887764311
Q ss_pred chhhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCcc
Q 015441 195 SREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTRH 269 (406)
Q Consensus 195 ~~~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~h 269 (406)
...+|||||+|+|++++++|+||+++ ++|+++.|+|+|++|+. |+..|..|. +..+.||+|.+.+..
T Consensus 219 -----~~~~IISnaSCTTNcLAPvlkvL~d~--fGI~~g~mTTvHs~T~d-Q~~~D~~h~D~Rr~Raaa~nIIPtsTGAA 290 (442)
T PLN02237 219 -----EVANIVSNASCTTNCLAPFVKVLDEE--FGIVKGTMTTTHSYTGD-QRLLDASHRDLRRARAAALNIVPTSTGAA 290 (442)
T ss_pred -----CCCCEEECCchHHHHHHHHHHHHHHh--cCeeEEEEEEEEeccCC-cccccCCCcccccccccccccccCCcchh
Confidence 12579999999999999999999998 79999999999999998 666776542 356689999988764
Q ss_pred ----cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCC-CCCHHHHHHHHHHHcCCCCc---EEecCCCCc
Q 015441 270 ----RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAP-GVTIEDLYQQLKISYEHEEF---VKLLEKGVV 341 (406)
Q Consensus 270 ----~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~-~~s~eev~~~l~~~y~~~~f---V~v~~~~~~ 341 (406)
+.+||+++ +++..++|||+..|.+.++++++++ +++.|||+++|+++..+ ++ +.+.++
T Consensus 291 kAv~~VlP~L~G----------Kl~g~A~RVPt~nvS~vDLt~~l~k~~~t~eein~~~k~aa~~-~lkgil~y~~~--- 356 (442)
T PLN02237 291 KAVSLVLPQLKG----------KLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADG-PLKGILAVCDV--- 356 (442)
T ss_pred hhhceecccCCC----------ceeeEEEecccCCceEEEEEEEeCCCCCCHHHHHHHHHHhhcc-ccCCeeeeeCC---
Confidence 46788876 5889999999999999999999998 79999999999998543 32 333322
Q ss_pred ccc-ccccCCCcEEE-----EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHhCC
Q 015441 342 PRT-HNVRGSNYCLM-----NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGF 393 (406)
Q Consensus 342 P~~-~~v~g~n~~~v-----~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~ 393 (406)
|-. .+-.|..+--| +... ..+-+-+++--|| -+|=|-+-+-.++.|...
T Consensus 357 plVS~Df~~~~~Ssi~D~~~t~v~--~~~~vKv~aWYDN-EwGys~R~~dl~~~~~~~ 411 (442)
T PLN02237 357 PLVSVDFRCSDVSSTIDASLTMVM--GDDMVKVVAWYDN-EWGYSQRVVDLAHLVAAK 411 (442)
T ss_pred ceeeeeecCCCcceEEEcccCEEe--CCCEEEEEEEeCC-chhHHHHHHHHHHHHHHh
Confidence 221 13334332222 1111 1222347777999 678888888888888764
No 31
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=99.98 E-value=4.4e-31 Score=261.86 Aligned_cols=232 Identities=16% Similarity=0.169 Sum_probs=176.8
Q ss_pred EEEEECcccHHHHHHHHHHHcC--CCceEEEEeccCcCC-----ccccccccCccc--------------c-CCCccc--
Q 015441 65 RIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAG-----QSIGSVFPHLIS--------------Q-DLPTMV-- 120 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~~~~G-----~~i~~v~p~l~~--------------~-~~~~~~-- 120 (406)
||||+| .|++||.++|++.+. ++++++++++..+.. .+++++|+.|.+ + .+....
T Consensus 1 ~i~ING-fGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGING-FGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEc-cChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence 699999 999999999998766 579999998743211 256666766531 1 121111
Q ss_pred ccCcccCC--CCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchh
Q 015441 121 AVKDADFS--NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRE 197 (406)
Q Consensus 121 ~~~~~~~~--~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~ 197 (406)
+.++.+|. ++|+||+|+|.+.+++.++. +++|+++||+|++ |+++ +|+++|++|.+.. .
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap-~~d~---------~plvV~gVN~~~~-~------- 141 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAP-SKGD---------APTIVYGVNHDEY-D------- 141 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCC-CCCC---------CCeecCCCCHHHh-C-------
Confidence 23344576 89999999999999999875 6899999999998 7653 5888888887743 1
Q ss_pred hccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc-----HHHHhcCcccccCCcccch
Q 015441 198 DIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL-----YSEIAEGIYSYGVTRHRHV 272 (406)
Q Consensus 198 ~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~-----~~e~~~ni~py~~~~h~h~ 272 (406)
...+|||||+|+|++++++|+||++. ++++++.|+|+|++||.++ ..+..+ .++++.|+.|+..+..
T Consensus 142 --~~~~IISn~sCtTn~Lap~lk~L~~~--fgI~~~~~TTiha~t~~q~-lld~~~~d~r~~r~~a~NiIP~~tg~a--- 213 (327)
T TIGR01534 142 --PEERIISNASCTTNCLAPLAKVLDEA--FGIVSGLMTTVHSYTNDQN-LVDGPHKDLRRARAAALNIIPTSTGAA--- 213 (327)
T ss_pred --CCCCEEecCCchHHHHHHHHHHHHHh--cCeeEEEEEEEEeecCccc-cccCCCCCCcCceEeEeeeeccCCChH---
Confidence 13579999999999999999999998 7999999999999999853 333221 1345678888764422
Q ss_pred hhhhhhhccccCCCc--eEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcC
Q 015441 273 PEIEQGLTGFASSKV--TVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYE 328 (406)
Q Consensus 273 pEi~~~l~~i~~~~~--~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~ 328 (406)
.++. +++ +.+ +|+.+++||||++||+.+++++++++++.||++++|+++.+
T Consensus 214 k~~~----kvl-P~L~gkv~~~avRVPv~~gs~~dl~v~~~~~~t~eev~~al~~a~~ 266 (327)
T TIGR01534 214 KAIG----KVL-PELAGKLTGMAIRVPTPNVSLVDLVLNLEKDTTKEEVNAALKEAAE 266 (327)
T ss_pred HHHh----hcc-ccCCCeEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHhhhh
Confidence 2222 222 222 49999999999999999999999999999999999998743
No 32
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=99.97 E-value=4.5e-30 Score=260.05 Aligned_cols=293 Identities=11% Similarity=0.123 Sum_probs=202.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-cCC-----ccccccccCccc--------------cCCCccc--
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAG-----QSIGSVFPHLIS--------------QDLPTMV-- 120 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-~~G-----~~i~~v~p~l~~--------------~~~~~~~-- 120 (406)
|+||+|+| .|.+||.++|.+...++++++++++.. ... .+++++|+.|.+ +.+....
T Consensus 85 ~~kvgInG-FGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 85 KTKIGING-FGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred ceEEEEEC-cCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 47999999 999999999998766789999998732 111 256777776642 1222111
Q ss_pred ccCcccCC--CCCEEEEcCCCcchHHHHhh-CCCCC--EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccc
Q 015441 121 AVKDADFS--NVDAVFCCLPHGTTQEIIKG-LPKSL--KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEIS 195 (406)
Q Consensus 121 ~~~~~~~~--~vDvVF~al~~~~s~~~~~~-l~~G~--~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~ 195 (406)
+.++.+|. ++|+||+|+|.+.+++.++. +++|+ +|||++++ ++|+++|++|.+.. .
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~-------------dvPlvV~gVN~~~l-~----- 224 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSA-------------DAPMFVVGVNEKTY-K----- 224 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCC-------------CCCeEEeccCHHHh-C-----
Confidence 22344576 89999999999999998875 57787 88998832 36778888877643 1
Q ss_pred hhhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH------HHHhcCcccccCCcc
Q 015441 196 REDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY------SEIAEGIYSYGVTRH 269 (406)
Q Consensus 196 ~~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~------~e~~~ni~py~~~~h 269 (406)
...+|||||+|+|++++++|+||+++ ++|+++.|+|+|++||. ++..|..++ ++++.|++|...+..
T Consensus 225 ----~~~~IISnaSCTTn~Lap~lk~L~~~--fGI~~g~mTTvha~T~t-Q~llD~~~~~d~r~~R~aa~NIIPt~tGaa 297 (421)
T PLN02272 225 ----PNMNIVSNASCTTNCLAPLAKVVHEE--FGILEGLMTTVHATTAT-QKTVDGPSMKDWRGGRGASQNIIPSSTGAA 297 (421)
T ss_pred ----CCCCeeeCCCcHHHHHHHHHHHHHHh--CCeEEEEEEEEEeccCc-cccccCccccccccCCCcccccccCCCccc
Confidence 12579999999999999999999998 79999999999999997 665664321 355677777654432
Q ss_pred cchhhhhhhhccccCCCc--eEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-cc
Q 015441 270 RHVPEIEQGLTGFASSKV--TVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HN 346 (406)
Q Consensus 270 ~h~pEi~~~l~~i~~~~~--~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~ 346 (406)
+ ++. +++ +.+ +++.+++||||++||+.+++++++++++.||++++|+++.++ ++-.++.-.+-|-. .+
T Consensus 298 k---av~----kVL-P~L~gkl~gtaVRVPv~~gs~~dltv~lek~~s~eev~~alk~a~~~-~l~gil~y~~~~lVS~D 368 (421)
T PLN02272 298 K---AVG----KVL-PELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEG-PLKGILGYTDEDVVSND 368 (421)
T ss_pred h---hhh----hcc-cccCCcEEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHHHhcc-ccccccccccCCEeeee
Confidence 1 222 222 223 499999999999999999999999999999999999998543 44333321111222 13
Q ss_pred ccCCCc-EEEEEEE--eCcCCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 347 VRGSNY-CLMNVFP--DRIPGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 347 v~g~n~-~~v~~~~--~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
..|..+ +-+-... .-..+-+-+++--|| -+|=+-+-+..+..|..
T Consensus 369 f~~~~~ssi~D~~~t~~~~~~~vKv~~WYDN-EwGys~R~~dl~~~~~~ 416 (421)
T PLN02272 369 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDN-EWGYSNRVLDLIEHMAL 416 (421)
T ss_pred cCCCCCcEEEEcccCeEecCCEEEEEEEecC-chhHHHHHHHHHHHHHh
Confidence 334332 1111100 001233457788899 56777777777766643
No 33
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=99.97 E-value=6e-32 Score=248.75 Aligned_cols=156 Identities=37% Similarity=0.473 Sum_probs=130.3
Q ss_pred HHHHHHccCCCcceEEEEEeeccCccCcchhh-----------------cccHHHHhcCcccccCC-cccchhhhhhhhc
Q 015441 219 LVPLIQANLIQYRNIIIDAKSGVSGAGRGAKE-----------------ANLYSEIAEGIYSYGVT-RHRHVPEIEQGLT 280 (406)
Q Consensus 219 L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~-----------------~~~~~e~~~ni~py~~~-~h~h~pEi~~~l~ 280 (406)
|+||+++ ++++++|+|+|+||+||||++|++ ..++.++++|+.||... .|+|+||+++++.
T Consensus 1 L~PL~~~-l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~ 79 (184)
T PF02774_consen 1 LAPLHKA-LFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELK 79 (184)
T ss_dssp HHHHHHT-HHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHH
T ss_pred CcchhhC-cCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHH
Confidence 7899998 678899999999999999998444 44556888999999988 8999999998875
Q ss_pred c------ccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCC-CCcEEecCCCCccccccccC-CCc
Q 015441 281 G------FASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEH-EEFVKLLEKGVVPRTHNVRG-SNY 352 (406)
Q Consensus 281 ~------i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~-~~fV~v~~~~~~P~~~~v~g-~n~ 352 (406)
. +++....|++|||||||+|||++|+|++++ .+..++.++++.+|.+ ++||++.+++.+|+|++++| +|.
T Consensus 80 ~~~~~~~~l~~~~~v~~t~~~vPv~rG~~~ti~v~~~--~~~~~~~~~~~~~~~~~~~~V~~~~~~~~P~~~~v~g~~n~ 157 (184)
T PF02774_consen 80 MIAETRKILGFPPRVSFTCVRVPVFRGHLATIYVELK--ETPVDVEEIYEAFYKGPEPFVRVDPEGDYPTPKDVVGGTNF 157 (184)
T ss_dssp HHHHHHHHCTETTEEEEEEEEESSSSEEEEEEEEEES--SSHHHHHHHHHHHHTSTTEEEEESSHTHHSSHHHHTTTSSS
T ss_pred hhccccceeeccccccccEEEEeeeeeEceeEEEEec--CCHHHHHHHHHHHhCCCCcEEEEcCCCCccccHhhccCCCe
Confidence 3 333222899999999999999999999996 3456666677777776 89999987678999999999 999
Q ss_pred EEEEEEEeC-cCC-eEEEEEEehhhhH
Q 015441 353 CLMNVFPDR-IPG-RAIIISVIDNLVK 377 (406)
Q Consensus 353 ~~v~~~~~~-~~~-~~~~~~v~DNL~K 377 (406)
|+|||++.+ ..+ .+.+|+++|||+|
T Consensus 158 ~~Vgrvr~d~~~~~~l~~~~~~DNL~K 184 (184)
T PF02774_consen 158 VDVGRVRVDPRDPRGLVVWSVIDNLRK 184 (184)
T ss_dssp EEEEEEEEETTTTTEEEEEEEEETTTT
T ss_pred EEEEEEEECCCCCCEEEEEEEEccccC
Confidence 999977644 344 5999999999998
No 34
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=1e-29 Score=254.75 Aligned_cols=228 Identities=15% Similarity=0.183 Sum_probs=168.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC---------CccccccccC----ccccCCCcccccCcccCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA---------GQSIGSVFPH----LISQDLPTMVAVKDADFSN 129 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~---------G~~i~~v~p~----l~~~~~~~~~~~~~~~~~~ 129 (406)
|+||||+|+ |.+|+.+++++.++|+++++++++.... |..+....|. +.+..+. +....++.+.+
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~-V~~~~~el~~~ 78 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIP-VAGTIEDLLEK 78 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceE-EcCChhHhhcc
Confidence 589999997 9999999999999999999999974321 1110000000 1111121 11111223468
Q ss_pred CCEEEEcCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecC
Q 015441 130 VDAVFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANP 208 (406)
Q Consensus 130 vDvVF~al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanP 208 (406)
+|+||+|+|.+.+.++++.+ ++|++|||+++.++..+ +++. +|++|.+ ++.+.++|+||
T Consensus 79 vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~~~~~~--------~~~~-v~~vN~~-----------~~~~~~~v~~~ 138 (341)
T PRK04207 79 ADIVVDATPGGVGAKNKELYEKAGVKAIFQGGEKAEVA--------GVSF-NALANYE-----------EALGKDYVRVV 138 (341)
T ss_pred CCEEEECCCchhhHHHHHHHHHCCCEEEEcCCCCCCCC--------CCcE-EeeECHH-----------HhCCCCcEEcc
Confidence 99999999999999999865 78999999999876543 2444 6666655 33334589999
Q ss_pred CChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCccccc--CCcccchhhhhhhhccccCCC
Q 015441 209 GCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYG--VTRHRHVPEIEQGLTGFASSK 286 (406)
Q Consensus 209 gC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~--~~~h~h~pEi~~~l~~i~~~~ 286 (406)
||+||+++++|+||+++ ++++++.++|+|++|+- . +. .+...+|+.|+. ...| |-+++... + +.
T Consensus 139 sCtT~~l~~~l~~L~~~--fgI~~~~vTtv~a~td~--~---~~-~r~~~~niip~p~~~~~~-~g~~v~~v----l-p~ 204 (341)
T PRK04207 139 SCNTTGLCRTLCALDRA--FGVKKVRATLVRRAADP--K---EV-KRGPINAIVPDPVTVPSH-HGPDVKTV----L-PD 204 (341)
T ss_pred ChHHHHHHHHHHHHHHh--cCceEEEEEEEEcCCCc--c---hh-hHHHhcCcCCCCCCCCCC-chhHHHhh----C-CC
Confidence 99999999999999987 79999999999998853 1 11 256678898874 2223 23444433 3 56
Q ss_pred ceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHH
Q 015441 287 VTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKIS 326 (406)
Q Consensus 287 ~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~ 326 (406)
++|+.+|+|||+++||+.+++++|+++++.||++++|+++
T Consensus 205 l~i~~~avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~ 244 (341)
T PRK04207 205 LDITTMAVKVPTTLMHMHSVNVELKKPVTKEEVLEALENT 244 (341)
T ss_pred CceEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHhC
Confidence 6799999999999999999999999999999999999987
No 35
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=2.2e-28 Score=242.98 Aligned_cols=294 Identities=11% Similarity=0.064 Sum_probs=201.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc-CcCC-----ccccccccCccc---------------cCCCccc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD-RKAG-----QSIGSVFPHLIS---------------QDLPTMV 120 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~-~~~G-----~~i~~v~p~l~~---------------~~~~~~~ 120 (406)
|++||||+| .|++||.++|.+.+.+++|++++++. .+.. .+++++|+.|.+ +.+..+.
T Consensus 1 m~~kv~ING-fGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~~ 79 (342)
T PTZ00353 1 LPITVGING-FGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVSA 79 (342)
T ss_pred CCeEEEEEC-CChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEEe
Confidence 447999999 99999999999877789999999862 2221 367777777731 1222222
Q ss_pred c--cCcccCC--CCCEEEEcCCCcchHHHHh-hC---CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhcccc
Q 015441 121 A--VKDADFS--NVDAVFCCLPHGTTQEIIK-GL---PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLT 192 (406)
Q Consensus 121 ~--~~~~~~~--~vDvVF~al~~~~s~~~~~-~l---~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglp 192 (406)
. .++.+|. ++|+||+|+|.+.+.+-+. .+ ++++.|+|.|. +.|.++|++|.+.. .
T Consensus 80 ~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~--------------d~p~vV~gVN~~~~-~-- 142 (342)
T PTZ00353 80 KHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSA--------------DAPTVMAGSNDERL-S-- 142 (342)
T ss_pred cCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCC--------------CCCeEEecCChHHc-C--
Confidence 2 2234576 9999999999986544332 23 34567777652 25777777776632 1
Q ss_pred ccchhhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEe---eccCccCc-chhhccc--HHHHhcCcccccC
Q 015441 193 EISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAK---SGVSGAGR-GAKEANL--YSEIAEGIYSYGV 266 (406)
Q Consensus 193 E~~~~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~---~gvSGaG~-~~~~~~~--~~e~~~ni~py~~ 266 (406)
...++||||+|+|++++++++||+++ |+|+++.|+|+ |..|++|. .++++.+ .+....||.|...
T Consensus 143 -------~~~~IISnaSCTTn~LapvlkvL~~~--fGI~~g~mTTvHs~q~~~~~d~~~~~~~d~rr~RaA~~nIiPtst 213 (342)
T PTZ00353 143 -------ASLPVCCAGAPIAVALAPVIRALHEV--YGVEECSYTAIHGMQPQEPIAARSKNSQDWRQTRVAIDAIAPYRD 213 (342)
T ss_pred -------CCCCEEECCCHHHHHHHHHHHHHHHh--cCeeEEEeeeeeecceeecCCCcccccccccccchHHhCCcccCC
Confidence 12579999999999999999999998 79999999999 88888876 4433322 3456788999877
Q ss_pred Cccc----chhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcc
Q 015441 267 TRHR----HVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVP 342 (406)
Q Consensus 267 ~~h~----h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P 342 (406)
+.++ .+|++.+ +++.+++|||+++||+.+++++++++++.||++++|+++.++ ++-.++.-.+-|
T Consensus 214 gaakav~kVlP~L~g----------kl~g~avRVPt~~vs~vdltv~~~k~~t~eein~~l~~aa~~-~l~gil~~~~~~ 282 (342)
T PTZ00353 214 NGAETVCKLLPHLVG----------RISGSAFQVPVKKGCAIDMLVRTKQPVSKEVVDSALAEAASD-RLNGVLCISKRD 282 (342)
T ss_pred cchhhhhhhccccCC----------cEEEEEEEccccCeEEEEEEEEECCCCCHHHHHHHHHHHhhc-ccCCeEEecCCC
Confidence 7653 3444433 489999999999999999999999999999999999998543 322222101112
Q ss_pred cc-ccccCCCcEEEEEEEeC---cCCeEEEEEEehhhhHhHHHHHHHHHHHHhCCC
Q 015441 343 RT-HNVRGSNYCLMNVFPDR---IPGRAIIISVIDNLVKGASGQALQNLNIMLGFP 394 (406)
Q Consensus 343 ~~-~~v~g~n~~~v~~~~~~---~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~~ 394 (406)
-. .+-.|+..+-+-..... ..+-+-+++--|| -+|=|-+-+..+..|..+.
T Consensus 283 ~VS~Df~~~~~si~D~~~t~~~~~~~~vKv~~WYDN-E~Gys~r~~dl~~~~~~~~ 337 (342)
T PTZ00353 283 MISVDCIPNGKLCYDATSSSSSREGEVHKMVLWFDV-ECYYAARLLSLVKQLHQIH 337 (342)
T ss_pred eeeeEeCCCCCeEEEcccCeEEeCCCEEEEEEEecC-chHHHHHHHHHHHHHHhcc
Confidence 22 13334433222110000 1223457788999 6788888888888876544
No 36
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=99.95 E-value=1.3e-26 Score=235.82 Aligned_cols=296 Identities=15% Similarity=0.157 Sum_probs=209.0
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcC----CCceEEEEeccCc-CC--------ccccccccCccc--------------
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANH----PYFGIKLMTADRK-AG--------QSIGSVFPHLIS-------------- 113 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~h----p~~elv~l~s~~~-~G--------~~i~~v~p~l~~-------------- 113 (406)
.+..||+|+| +|+|||.++|+|.+. +.+++++++.+.. .+ .+++++|+.|.+
T Consensus 125 ~~~~~V~InG-FGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liin 203 (477)
T PRK08289 125 IEPRDVVLYG-FGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIAN 203 (477)
T ss_pred CCCceEEEEC-CCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEEC
Confidence 3457999999 999999999998765 6899999964211 11 267888887753
Q ss_pred -cCCCcccccCcc--cCC--CCC--EEEEcCCCcchHHHHhh-CC-CCC-EEEEcCCcccCCCccchhhhcCCCCCCccc
Q 015441 114 -QDLPTMVAVKDA--DFS--NVD--AVFCCLPHGTTQEIIKG-LP-KSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDL 183 (406)
Q Consensus 114 -~~~~~~~~~~~~--~~~--~vD--vVF~al~~~~s~~~~~~-l~-~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pev 183 (406)
..+..+..-++. +|. ++| +|+.|+|.....+-+.. ++ +|+ +|| +|++. ++ +.|.++|++
T Consensus 204 g~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkVi-iSAP~--k~--------d~p~iV~GV 272 (477)
T PRK08289 204 GNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVL-LTAPG--KG--------DIKNIVHGV 272 (477)
T ss_pred CEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEE-ECCCC--CC--------CCCeEEccc
Confidence 111112222222 353 889 99999999988886654 66 674 677 78873 33 356677766
Q ss_pred hhhhhccccccchhhcc-CCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHH
Q 015441 184 QKEAVYGLTEISREDIK-NARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEI 257 (406)
Q Consensus 184 n~~~vyglpE~~~~~i~-~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~ 257 (406)
|.+. +. ..+|||||+|+|+|++++|+||++. |+|++..|+|+|++|+ |+.++|++|. +++
T Consensus 273 N~~~-----------~~~~~~IISnASCTTN~LaPvlKvL~d~--fGI~~g~mTTvHa~T~-dQ~lvD~~hkd~RrgRaa 338 (477)
T PRK08289 273 NHSD-----------ITDEDKIVSAASCTTNAITPVLKAVNDK--YGIVNGHVETVHSYTN-DQNLIDNYHKGDRRGRSA 338 (477)
T ss_pred CHHH-----------hCCCCCEEECCccHHHHHHHHHHHHHHh--cCeeEEEEEEEecccC-ChHHhhhhhhcCccccee
Confidence 6553 32 3579999999999999999999998 7999999999999999 8999998653 245
Q ss_pred hcCcccccCCcc----cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcE
Q 015441 258 AEGIYSYGVTRH----RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFV 333 (406)
Q Consensus 258 ~~ni~py~~~~h----~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV 333 (406)
+.|+.|...+.. +.+||+++ +++.+++||||++|++.+++++++++++.|+|+++|+++....++-
T Consensus 339 a~NIIptsTGAAkAv~kVLP~L~G----------Kltg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~~~L~ 408 (477)
T PRK08289 339 PLNMVITETGAAKAVAKALPELAG----------KLTGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQ 408 (477)
T ss_pred eeeeEecCCChhhhhhhcccccCC----------cEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhcCCcc
Confidence 678888776653 34565544 5899999999999999999999999999999999999986333433
Q ss_pred EecCCCCccccc--cccCCCcEEEE---EEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHhCCC
Q 015441 334 KLLEKGVVPRTH--NVRGSNYCLMN---VFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFP 394 (406)
Q Consensus 334 ~v~~~~~~P~~~--~v~g~n~~~v~---~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~~ 394 (406)
.++.=.+-|... +-.|+.+-.|- ...- ..+.+.+++--|| -.|=+-|-+..++.|.+..
T Consensus 409 gil~yt~~~~lVSsDfig~~~SsI~D~~~T~v-~g~~vkv~~WYDN-E~GYS~rvvdl~~~~~~~~ 472 (477)
T PRK08289 409 NQIDYTDSTEVVSSDFVGSRHAGVVDSQATIV-NGNRAVLYVWYDN-EFGYSCQVVRVMEQMAGVR 472 (477)
T ss_pred ceeeecccCCeeeeeecCCCchhheehhccEE-cCCEEEEEEEecC-chhHHHHHHHHHHHHHhcc
Confidence 332211112111 22333322110 0000 1345667777999 6888999999998886653
No 37
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.2e-25 Score=219.75 Aligned_cols=284 Identities=17% Similarity=0.198 Sum_probs=200.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC-CceEEEEeccCcCC-----ccccccccCccc-------------cCCCcccccC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMVAVK 123 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~~~~ 123 (406)
|+||||+| +|.|||.++|.+...+ ++|++++++..... .+++++|+.|.+ ..++.....+
T Consensus 1 ~ikV~ING-fGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~ 79 (335)
T COG0057 1 MIKVAING-FGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD 79 (335)
T ss_pred CcEEEEec-CcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCC
Confidence 58999999 9999999999999888 79999999743322 245666666543 2232222233
Q ss_pred cc--cC--CCCCEEEEcCCCcchHHHHhh-CCC-CC-EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccch
Q 015441 124 DA--DF--SNVDAVFCCLPHGTTQEIIKG-LPK-SL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISR 196 (406)
Q Consensus 124 ~~--~~--~~vDvVF~al~~~~s~~~~~~-l~~-G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~ 196 (406)
++ +| .++|+|+.|+|.+.+++.+++ +++ |+ +|| +|++- ++ + + ++.+|| +|.
T Consensus 80 p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~-isap~--~~--------~----~----~~vv~g---vn~ 137 (335)
T COG0057 80 PANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVL-ISAPG--KD--------D----V----ATVVYG---VNH 137 (335)
T ss_pred hHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEE-EcCCC--CC--------C----c----cEEEEe---ccc
Confidence 22 23 268999999999999998875 666 45 555 77753 11 0 1 256788 677
Q ss_pred hhcc-CCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCcc-
Q 015441 197 EDIK-NARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTRH- 269 (406)
Q Consensus 197 ~~i~-~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~h- 269 (406)
+.+. ++++|+|.+|+|||+++.+++|.++ |+|+++.++|.|++++. +.-.|.+|. +.++.|+.|.+.+..
T Consensus 138 ~~~~~~~~iVsnaSCTTNcLap~~kvl~d~--fGI~~g~mTtVh~~T~d-Q~~~dgph~~~rr~raa~~niIp~sTgaAk 214 (335)
T COG0057 138 NYYDAGHTIVSNASCTTNCLAPVAKVLNDA--FGIEKGLMTTVHAYTND-QKLVDGPHKDLRRARAAALNIIPTSTGAAK 214 (335)
T ss_pred cccCCCCcEEEEccchhhhhHHHHHHHHHh--cCeeEEEEEEEEcccCC-CccccCcccchhhhccccCCCCcCCCcchh
Confidence 7776 6899999999999999999999998 89999999999999998 556777653 455678888766542
Q ss_pred ---cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccc-
Q 015441 270 ---RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTH- 345 (406)
Q Consensus 270 ---~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~- 345 (406)
..+||+.+ ++..+++|||+..+|+.+++++++++++.|||+++|+++... .|=.+.+=.+.|...
T Consensus 215 av~~VlP~L~g----------Kl~g~A~RVPt~~vs~~dl~v~l~k~~t~eeIn~alk~as~~-~lkg~~~y~e~~~Vs~ 283 (335)
T COG0057 215 AVGLVLPELKG----------KLTGMAIRVPTPNVSVVDLTVELEKEVTVEEINAALKAASEI-GLKGILGYTEDPLVSS 283 (335)
T ss_pred hhhhhCcccCC----------ceeeEEEEecCCCcEEEEEEEEeCCCCCHHHHHHHHHHhhcc-cccceeeeEecccccc
Confidence 35677765 589999999999999999999999999999999999998543 322222111123221
Q ss_pred cccCCCcEEEEEEEeC----cC-CeEEEEEEehhhhHhHHHHHHHH
Q 015441 346 NVRGSNYCLMNVFPDR----IP-GRAIIISVIDNLVKGASGQALQN 386 (406)
Q Consensus 346 ~v~g~n~~~v~~~~~~----~~-~~~~~~~v~DNL~KGAAgqAVQ~ 386 (406)
+-.|.. +.+++-.. .. +.+-+++..|| =.|-+-+-|..
T Consensus 284 D~~~~~--~ssI~d~~~t~~~~~~~vk~~~wydN-E~gys~r~vD~ 326 (335)
T COG0057 284 DFNGDP--HSSIFDASATIVLGGNLVKLVAWYDN-EWGYSNRVVDL 326 (335)
T ss_pred ccCCCc--ceeEEEccceEeccCcEEEEEEEEec-cccchHHHHHH
Confidence 222222 22233221 12 23668889999 45555555555
No 38
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=99.94 E-value=5.6e-25 Score=218.62 Aligned_cols=294 Identities=13% Similarity=0.126 Sum_probs=209.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC----CCceEEEEecc-CcCC-----ccccccccCccc------------------
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH----PYFGIKLMTAD-RKAG-----QSIGSVFPHLIS------------------ 113 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h----p~~elv~l~s~-~~~G-----~~i~~v~p~l~~------------------ 113 (406)
|++||||+| +|+|||.++|.+.+. +++|++++++. .... .+++++|+.|.+
T Consensus 2 m~ikVgING-FGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ 80 (361)
T PTZ00434 2 APIKVGING-FGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLV 80 (361)
T ss_pred CceEEEEEC-cChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEE
Confidence 457999999 999999999997753 68999999973 2222 367777776531
Q ss_pred ---cCCCcc-cccCcc--cCC--CCCEEEEcCCCcchHHHHhh-CCCCC-EEEEcCCcccCCCccchhhhcCCCCCCccc
Q 015441 114 ---QDLPTM-VAVKDA--DFS--NVDAVFCCLPHGTTQEIIKG-LPKSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDL 183 (406)
Q Consensus 114 ---~~~~~~-~~~~~~--~~~--~vDvVF~al~~~~s~~~~~~-l~~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pev 183 (406)
+.+..+ .+.++. .|. ++|+|+.|+|...+++-+.. +++|+ +|| +|++. +++ .
T Consensus 81 ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkVi-iSAP~--~d~--------~------- 142 (361)
T PTZ00434 81 VNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVV-ISAPA--SGG--------A------- 142 (361)
T ss_pred ECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEE-ECCCC--CCC--------C-------
Confidence 112212 222232 353 89999999999999887754 67774 677 77763 221 1
Q ss_pred hhhhhccccccchhhccC--CcEEecCCChHHHHHHHHHHH-HHccCCCcceEEEEEeeccCccCcchhhcccH------
Q 015441 184 QKEAVYGLTEISREDIKN--ARLVANPGCYPTSIQLPLVPL-IQANLIQYRNIIIDAKSGVSGAGRGAKEANLY------ 254 (406)
Q Consensus 184 n~~~vyglpE~~~~~i~~--~~iVanPgC~tta~~l~L~PL-~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~------ 254 (406)
...+|| +|++++.. .++|||.+|+|+|+++.++.| +++ |+|++..++|+|++++. |+..|..++
T Consensus 143 -~t~V~G---VN~~~y~~~~~~IiSnASCTTNcLAP~~kvL~~~~--fGI~~g~mTTVHayT~~-Q~~~D~~~~kD~Rr~ 215 (361)
T PTZ00434 143 -KTIVMG---VNQHEYSPTEHHVVSNASCTTNCLAPIVHVLTKEG--FGIETGLMTTIHSYTAT-QKTVDGVSVKDWRGG 215 (361)
T ss_pred -ceEEEc---CChHHcCcccCcEEECCChHHHhhHHHHHHhhcCC--cceEEEEEEEEecccCC-cccccCcCccccccc
Confidence 146888 78888865 579999999999999999999 677 89999999999999998 666776532
Q ss_pred HHHhcCcccccCCcc----cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCC
Q 015441 255 SEIAEGIYSYGVTRH----RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHE 330 (406)
Q Consensus 255 ~e~~~ni~py~~~~h----~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~ 330 (406)
+..+.||+|.+.+.. +.+||+++ +++..++|||+..|.+.+++++++++++.|||+++++++.++
T Consensus 216 Raaa~nIIPtsTGAAkAv~~VlP~L~G----------Kl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa~~- 284 (361)
T PTZ00434 216 RAAAVNIIPSTTGAAKAVGMVIPSTKG----------KLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQT- 284 (361)
T ss_pred ccccccCccCCcchhhhhceeccccCC----------ceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhhhc-
Confidence 346789999988864 46788876 589999999999999999999999999999999999998543
Q ss_pred CcEEecCCCCcccc-ccccCCCc-EEEE----EEEe--CcCCeEEEEEEehhhhHhHHHHHHHHHHHHhCC
Q 015441 331 EFVKLLEKGVVPRT-HNVRGSNY-CLMN----VFPD--RIPGRAIIISVIDNLVKGASGQALQNLNIMLGF 393 (406)
Q Consensus 331 ~fV~v~~~~~~P~~-~~v~g~n~-~~v~----~~~~--~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~ 393 (406)
++-.++.=.+-|-. .+-.|+.+ +-+- ...+ ...+-+-+++--|| -+|=|-+-+..+..|...
T Consensus 285 ~lkgIl~y~~~plVS~Df~g~~~Ssi~D~~~t~v~~~~~~~~~vKv~~WYDN-EwGys~Rl~dl~~~~~~~ 354 (361)
T PTZ00434 285 YMKGILGFTDDELVSADFINDNRSSIYDSKATLQNNLPGERRFFKIVSWYDN-EWGYSHRVVDLVRYMAAK 354 (361)
T ss_pred cccCcccccCCCccccccCCCCCCeEEEhhhCeEeccCCCCCEEEEEEEecC-chHHHHHHHHHHHHHHhc
Confidence 44333321111221 13334332 1111 1111 01133558888999 677777777777776543
No 39
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.92 E-value=4.4e-26 Score=195.82 Aligned_cols=118 Identities=41% Similarity=0.777 Sum_probs=98.5
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
||+|+|||||+|++|+++|.+||.++++.+.+++. +|+++.+.+|.+.+.....+++.+.+.+.++|+||+|+|++.++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~ 80 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK 80 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence 79999999999999999999999999999988777 99999999885543222223444455678999999999999999
Q ss_pred HHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccC
Q 015441 144 EIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKN 201 (406)
Q Consensus 144 ~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~ 201 (406)
++++++ ++|++|||+|++||+++ +++||+||+|++++++
T Consensus 81 ~~~~~~~~~g~~ViD~s~~~R~~~-------------------~~~~~~pevn~~~i~~ 120 (121)
T PF01118_consen 81 ELAPKLLKAGIKVIDLSGDFRLDD-------------------DVPYGLPEVNREQIKK 120 (121)
T ss_dssp HHHHHHHHTTSEEEESSSTTTTST-------------------TSEEE-HHHHHHHHHC
T ss_pred HHHHHHhhCCcEEEeCCHHHhCCC-------------------CCCEEeCCcCHHHHcc
Confidence 999886 89999999999999987 3569999999998865
No 40
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=99.83 E-value=8.9e-20 Score=181.39 Aligned_cols=225 Identities=14% Similarity=0.134 Sum_probs=160.2
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-------CccccccccCcc------ccCCCcccccCcccCCCCCE
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-------GQSIGSVFPHLI------SQDLPTMVAVKDADFSNVDA 132 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-------G~~i~~v~p~l~------~~~~~~~~~~~~~~~~~vDv 132 (406)
|||+| .|.+|+.++|.+.++|+++++++++.... -..++..|+... ...+.....+ ++.+.++|+
T Consensus 1 VaInG-~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~-eeLl~~vDi 78 (333)
T TIGR01546 1 VGVNG-YGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTL-EDLLEKVDI 78 (333)
T ss_pred CEEEC-CcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCH-HHHhhcCCE
Confidence 69999 99999999999988899999999973321 012444332111 0011111111 122368999
Q ss_pred EEEcCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCCh
Q 015441 133 VFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCY 211 (406)
Q Consensus 133 VF~al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~ 211 (406)
|+.|+|.+...+.++.+ +.|.+.|=.|+.. ++ + ++ ..++|| +|.+++.+..+|+|.+|+
T Consensus 79 Vve~Tp~~~~~~na~~~~~~GakaVl~~~p~--~~---------~----~~--~tfv~g---vN~~~~~~~~~vs~aSCt 138 (333)
T TIGR01546 79 VVDATPGGIGAKNKPLYEKAGVKAIFQGGEK--AE---------V----AD--VSFVAQ---ANYEAALGKDYVRVVSCN 138 (333)
T ss_pred EEECCCCCCChhhHHHHHhCCcCEEEECCCC--CC---------C----CC--ceEEee---eCHHHcCcCceEEecCch
Confidence 99999999988877765 5565433377763 11 1 11 135666 677777766699999999
Q ss_pred HHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccc--cCCcccchhhhhhhhccccCCCceE
Q 015441 212 PTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSY--GVTRHRHVPEIEQGLTGFASSKVTV 289 (406)
Q Consensus 212 tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py--~~~~h~h~pEi~~~l~~i~~~~~~v 289 (406)
||++++.+++|++. |+++++.++|.+. ++. ++ | +.+...+||.|. .+.+|. -+.+...+ +.+++
T Consensus 139 Tn~Lap~~~~L~~~--fGI~~~~~Ttvh~-t~d-q~--d--~rrgr~~~IiP~~~t~ps~~-a~av~~Vl-----P~L~i 204 (333)
T TIGR01546 139 TTGLVRTLNAINDY--SKVDKVRAVMVRR-AAD-PN--D--VKKGPINAIVPDPVTVPSHH-GPDVQTVI-----PNLNI 204 (333)
T ss_pred HhhHHHHHHHHHHh--cCeEEEEEEEEee-cCC-hh--h--hccCchhceEeCCCCCCCch-HHHHHHcC-----CCCCc
Confidence 99999999999998 7999999999995 444 32 2 223346889987 444553 45554433 34558
Q ss_pred EEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHH
Q 015441 290 SFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKIS 326 (406)
Q Consensus 290 ~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~ 326 (406)
...++|||+..+|+.+++++++++++.|||+++|+++
T Consensus 205 ~g~AvrVPt~~vs~~dl~v~l~~~~t~eeV~~~l~~~ 241 (333)
T TIGR01546 205 ETMAFVVPTTLMHVHSIMVELKKPVTKDDIIDILENT 241 (333)
T ss_pred cEEEEEeCCCCcEEEEEEEEECCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999986
No 41
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.77 E-value=5.2e-18 Score=166.52 Aligned_cols=219 Identities=16% Similarity=0.291 Sum_probs=150.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc--CCccccccccCccccCCCcccc-cCcccCCCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIGSVFPHLISQDLPTMVA-VKDADFSNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~--~G~~i~~v~p~l~~~~~~~~~~-~~~~~~~~vDvVF~al~ 138 (406)
+++||||+| +|.+|+.++..|.+.|.++++++++... .|.....-+. +.. ....++. ++..+|.++|+||+|+|
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~G-i~~-~~~~ie~LL~~~~~~dIDiVf~AT~ 79 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLG-VAT-SAEGIDGLLAMPEFDDIDIVFDATS 79 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcC-CCc-ccCCHHHHHhCcCCCCCCEEEECCC
Confidence 358999999 9999999888888889999999997543 2322221111 000 0011111 22335678999999999
Q ss_pred CcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHH
Q 015441 139 HGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL 217 (406)
Q Consensus 139 ~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l 217 (406)
+....++++.+ ++|+.|||++++|+ .|+++||+|.+...+ ..+.++|+||||.++.+++
T Consensus 80 a~~H~e~a~~a~eaGk~VID~sPA~~------------~PlvVP~VN~~~~~~--------~~~~~iia~p~~ati~~v~ 139 (302)
T PRK08300 80 AGAHVRHAAKLREAGIRAIDLTPAAI------------GPYCVPAVNLDEHLD--------APNVNMVTCGGQATIPIVA 139 (302)
T ss_pred HHHHHHHHHHHHHcCCeEEECCcccc------------CCcccCcCCHHHHhc--------ccCCCEEECccHHHHHHHH
Confidence 99999999875 88999999999983 589999999987632 2346899999999999999
Q ss_pred HHHHHHHccCCCcceEEEEEeeccC-ccC-cchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceEEEEEEE
Q 015441 218 PLVPLIQANLIQYRNIIIDAKSGVS-GAG-RGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHL 295 (406)
Q Consensus 218 ~L~PL~~~~l~~i~~i~v~t~~gvS-GaG-~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v~~t~~r 295 (406)
+|+|+.+. +..+|+ +|+++.| |.| |..+|+ +..++...+.-++-.. + .+.-|...|.-
T Consensus 140 Al~~v~~~---~~~eIv-at~~s~s~g~gtr~nidE-~~~~t~~~~~~~~g~~-~--------------~kai~~~npa~ 199 (302)
T PRK08300 140 AVSRVAPV---HYAEIV-ASIASKSAGPGTRANIDE-FTETTSRAIEKVGGAA-R--------------GKAIIILNPAE 199 (302)
T ss_pred HhcccCcC---ceeeee-eeehhhccCCcccccHHH-HHHHHHHHHHHhcCcc-c--------------ceEEEEecCCC
Confidence 99996542 556776 9999999 999 888888 3344443333221110 0 00113334433
Q ss_pred eeecceeEEEEEEEeCCCCCHHHHHHHHHH
Q 015441 296 MPMIRGMQSTIYVEMAPGVTIEDLYQQLKI 325 (406)
Q Consensus 296 VPv~rG~~~ti~v~l~~~~s~eev~~~l~~ 325 (406)
=|+. +--|+|...+++.+.++|++...+
T Consensus 200 p~~~--m~~tv~~~~~~~~~~~~i~~~~~~ 227 (302)
T PRK08300 200 PPLI--MRDTVYCLVDEDADQDAIEASVHA 227 (302)
T ss_pred CCcc--ceeeEEEeeCCCCCHHHHHHHHHH
Confidence 3331 344777777776888888887665
No 42
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=99.51 E-value=5.8e-14 Score=120.27 Aligned_cols=114 Identities=40% Similarity=0.760 Sum_probs=84.9
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEec-cCcCCccccccccCccccCCCcccccCcccC--CCCCEEEEcCCCcc
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLPHGT 141 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s-~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~~~~ 141 (406)
||+|+|++|++|+.+++.|.++|+++++++.+ +++.|+.+.+.++.+..... ...+.+++ .++|+||+|+|...
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~DvV~~~~~~~~ 77 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVV---LELEPEDFEELAVDIVFLALPHGV 77 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccc---cccccCChhhcCCCEEEEcCCcHH
Confidence 68999999999999999999999999999954 45677877777665432111 11222233 48999999999998
Q ss_pred hHHHHh----hCCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhcc
Q 015441 142 TQEIIK----GLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIK 200 (406)
Q Consensus 142 s~~~~~----~l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~ 200 (406)
..+.++ .+..|+.|||+|+++|+++ ...|++||+|+++++
T Consensus 78 ~~~~~~~~~~~~~~g~~viD~s~~~~~~~-------------------~~~~~~~~~n~~~~~ 121 (122)
T smart00859 78 SKEIAPLLPKAAEAGVKVIDLSSAFRMDD-------------------DVPYGLPEVNPEAIK 121 (122)
T ss_pred HHHHHHHHHhhhcCCCEEEECCccccCCC-------------------CceEEcCccCHHHhc
Confidence 888543 2467999999999999976 234777777776543
No 43
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.50 E-value=5.4e-13 Score=130.66 Aligned_cols=215 Identities=14% Similarity=0.223 Sum_probs=139.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc--CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~--~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
++||||+| +|.+|+.++..+.+.+.++++++.+... .+.....-+. ... ....++.+-. -.++|+||+|+|+.
T Consensus 1 klrVAIIG-~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~G-i~~-~~~~~e~ll~--~~dIDaV~iaTp~~ 75 (285)
T TIGR03215 1 KVKVAIIG-SGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELG-VKT-SAEGVDGLLA--NPDIDIVFDATSAK 75 (285)
T ss_pred CcEEEEEe-CcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCC-CCE-EECCHHHHhc--CCCCCEEEECCCcH
Confidence 37999999 6999999977777788999999987433 2211111110 000 0000111100 13689999999999
Q ss_pred chHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHHH
Q 015441 141 TTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPL 219 (406)
Q Consensus 141 ~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~L 219 (406)
...+++..+ ++|+.|||+++.++ .|+.+|++|.+..-+ ..+.++|++|+|.++.++.+|
T Consensus 76 ~H~e~a~~al~aGk~VIdekPa~~------------~plvvp~VN~~~~~~--------~~~~~iv~c~~~atip~~~al 135 (285)
T TIGR03215 76 AHARHARLLAELGKIVIDLTPAAI------------GPYVVPAVNLDEHLD--------APNVNMVTCGGQATIPIVAAI 135 (285)
T ss_pred HHHHHHHHHHHcCCEEEECCcccc------------CCccCCCcCHHHHhc--------CcCCCEEEcCcHHHHHHHHHH
Confidence 888888764 88999999999872 589999999765532 234689999999999999999
Q ss_pred HHHHHccCCCcceEEEEEeeccCc-c-CcchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceEEEEEEEee
Q 015441 220 VPLIQANLIQYRNIIIDAKSGVSG-A-GRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMP 297 (406)
Q Consensus 220 ~PL~~~~l~~i~~i~v~t~~gvSG-a-G~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v~~t~~rVP 297 (406)
+++++.+ + ..+++|+++.|+ . ||.++|+ +..++...+...+-. .+ .+.-+...|.-=|
T Consensus 136 ~r~~d~~-~---~~iv~ti~s~S~g~g~r~~ide-l~~~t~~~~~~~gG~-~~--------------~k~~~~~~~a~p~ 195 (285)
T TIGR03215 136 SRVAPVH-Y---AEIVASIASRSAGPGTRANIDE-FTETTSRALEQVGGA-KK--------------GKAIIILNPAEPP 195 (285)
T ss_pred HHhhccc-c---EEEEEEEEeeccCCCchhHHHH-HHHHHHHHHHHcCCc-cc--------------ceEEEEecCCCCC
Confidence 9999874 2 256788999995 8 5888897 344544333322111 00 0001333333333
Q ss_pred ecceeEEEEEEEeCCCCCHHHHHHHHHH
Q 015441 298 MIRGMQSTIYVEMAPGVTIEDLYQQLKI 325 (406)
Q Consensus 298 v~rG~~~ti~v~l~~~~s~eev~~~l~~ 325 (406)
+. +--|+|...+ +.+.++|++...+
T Consensus 196 ~~--~~~~~~~~~~-~~~~~~~~~~~~~ 220 (285)
T TIGR03215 196 LM--MRDTIYCLVE-DPDEDAIEASVEE 220 (285)
T ss_pred cc--ceeeEEEecC-CCCHHHHHHHHHH
Confidence 31 2346666554 4788888876665
No 44
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=99.23 E-value=1.8e-11 Score=109.39 Aligned_cols=125 Identities=19% Similarity=0.332 Sum_probs=87.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-cCC-----ccccccccCccc-------------cCCCcccccCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAG-----QSIGSVFPHLIS-------------QDLPTMVAVKD 124 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-~~G-----~~i~~v~p~l~~-------------~~~~~~~~~~~ 124 (406)
+||||+| .|.|||.++|.+...|++|++++++.. +.. .+++++|..|.. ..+..+...++
T Consensus 1 ikVgING-fGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp 79 (151)
T PF00044_consen 1 IKVGING-FGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDP 79 (151)
T ss_dssp EEEEEES-TSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSG
T ss_pred CEEEEEC-CCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhh
Confidence 6899999 999999999999999999999999765 222 256777766631 22222233333
Q ss_pred c--cC--CCCCEEEEcCCCcchHHHHhh-CCCCC-EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhh
Q 015441 125 A--DF--SNVDAVFCCLPHGTTQEIIKG-LPKSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (406)
Q Consensus 125 ~--~~--~~vDvVF~al~~~~s~~~~~~-l~~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~ 198 (406)
. +| .++|+|+.|+|.+.+++.++. +++|+ +|| +|++. +++ . -+..+|| +|.+.
T Consensus 80 ~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkVi-isap~--~~~-----------~----~~t~V~G---vN~~~ 138 (151)
T PF00044_consen 80 EEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVI-ISAPS--KDD-----------A----DPTFVMG---VNHDD 138 (151)
T ss_dssp GGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEE-ESSS---SSS-----------S----SEEE-TT---TSGGG
T ss_pred cccccccccccEEEeccccceeccccccccccccccee-ecccc--ccc-----------c----CCeEEee---ccHHH
Confidence 3 34 489999999999999888765 56775 677 78864 221 0 1256788 78888
Q ss_pred ccCC-cEEecCCC
Q 015441 199 IKNA-RLVANPGC 210 (406)
Q Consensus 199 i~~~-~iVanPgC 210 (406)
+... ++|||.+|
T Consensus 139 ~~~~~~iIS~aSC 151 (151)
T PF00044_consen 139 YDPEHHIISNASC 151 (151)
T ss_dssp GTTTTSEEEE--H
T ss_pred hCCCCCEEEccCC
Confidence 8765 99999999
No 45
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=98.96 E-value=2.3e-09 Score=95.61 Aligned_cols=124 Identities=23% Similarity=0.398 Sum_probs=84.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-----ccccccccCccc-------------cCCCcccccCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMVAVKDA 125 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~~~~~~ 125 (406)
+||+|+|. |.+|+.+++.+.++++++++++.+..+.. .+++++|+.|.. ..+..+...++.
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~ 79 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPA 79 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChH
Confidence 58999995 99999999999988999999998743222 245667776642 111111111221
Q ss_pred --cC--CCCCEEEEcCCCcchHHHHhh-CCCCC-EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhc
Q 015441 126 --DF--SNVDAVFCCLPHGTTQEIIKG-LPKSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDI 199 (406)
Q Consensus 126 --~~--~~vDvVF~al~~~~s~~~~~~-l~~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i 199 (406)
+| .++|+|+.|+|...+++-++. +++|+ +|| +|++. +++ . ...+|| +|.+++
T Consensus 80 ~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkVi-isap~--~~~---------~-------~t~V~G---vN~~~~ 137 (149)
T smart00846 80 NLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVI-ISAPA--KDA---------D-------KTFVYG---VNHDEY 137 (149)
T ss_pred HCcccccCCeEEEeccccccchHHHHHHHHcCCCEEE-eCCCC--CCC---------C-------ceEEEe---echHHc
Confidence 24 489999999999888886654 56775 566 78863 221 0 145777 788888
Q ss_pred cC-CcEEecCCC
Q 015441 200 KN-ARLVANPGC 210 (406)
Q Consensus 200 ~~-~~iVanPgC 210 (406)
.. .++|||.+|
T Consensus 138 ~~~~~iiS~aSC 149 (149)
T smart00846 138 DPEDHIVSNASC 149 (149)
T ss_pred CCCCCEEEcCCC
Confidence 65 459999999
No 46
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=98.79 E-value=1.1e-08 Score=91.99 Aligned_cols=109 Identities=13% Similarity=0.093 Sum_probs=82.4
Q ss_pred HHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCc----ccchhhhhhhhccccCC
Q 015441 215 IQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTR----HRHVPEIEQGLTGFASS 285 (406)
Q Consensus 215 ~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~----h~h~pEi~~~l~~i~~~ 285 (406)
+++.++.|++. |+|++..++|+|+++.. |+.+|..+. +..+.|+.|...+. .+.+||+..
T Consensus 1 Lap~~k~l~~~--fgI~~~~~Ttih~~t~~-Q~~~D~~~~d~rrgr~a~~niip~~t~aa~av~~VlP~L~g-------- 69 (157)
T PF02800_consen 1 LAPVLKVLDDN--FGIEKGRMTTIHAYTDP-QKLVDGPHKDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNG-------- 69 (157)
T ss_dssp HHHHHHHHHHH--HEEEEEEEEEEEESSTT-SBSSSS--SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTT--------
T ss_pred Ccchhhhhhhh--cCEEEEEEEEEeccCCc-cceeeeccccccccccccccccccccccchhhhhhhhhccC--------
Confidence 46789999998 79999999999999988 556665431 12346777765443 234566543
Q ss_pred CceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCC--CCcEEec
Q 015441 286 KVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEH--EEFVKLL 336 (406)
Q Consensus 286 ~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~--~~fV~v~ 336 (406)
++...++|||+..||+.+++++++++++.|||+++|+++..+ ..++.+.
T Consensus 70 --ki~g~a~rVPt~~~s~~dl~~~l~k~~t~eeV~~~~~~aa~~~~~gil~~~ 120 (157)
T PF02800_consen 70 --KITGMAVRVPTPNVSLHDLTVELEKPVTKEEVNEALKQAARGPLKGILGYT 120 (157)
T ss_dssp --TEEEEEEEESSSSEEEEEEEEEESSSS-HHHHHHHHHHHHHTTTTTTEEEE
T ss_pred --cceeeEEeeeecccCceEEEEecccchhhhhhhhhhhhhhHhhhhhhheec
Confidence 689999999999999999999999999999999999998632 3455554
No 47
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=2.1e-07 Score=89.28 Aligned_cols=164 Identities=14% Similarity=0.146 Sum_probs=120.9
Q ss_pred CCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccC-CcEE
Q 015441 128 SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKN-ARLV 205 (406)
Q Consensus 128 ~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~-~~iV 205 (406)
.++|++...++...+.+.+.. ++.|.+.+=.|+.- .| .| .++.| +|++++.. ..+|
T Consensus 73 ~g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps--~d---------ap--------mfv~g---Vn~~~y~~~~~ii 130 (285)
T KOG0657|consen 73 KGADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPS--AD---------AP--------MFVMG---VNGEKYDNSLDII 130 (285)
T ss_pred ccceeEeeccccccccccccccccccceEEEecccc--CC---------CC--------ccccc---cccccccccccee
Confidence 378999999998888887764 56565322133321 11 23 23445 56666653 4589
Q ss_pred ecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH------HHHhcCcccccCCccc----chhhh
Q 015441 206 ANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY------SEIAEGIYSYGVTRHR----HVPEI 275 (406)
Q Consensus 206 anPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~------~e~~~ni~py~~~~h~----h~pEi 275 (406)
||.+|++.++++..+-++++ |+|....++|.++++.. ++-+|.+.. +....||+|-+.++++ .+||+
T Consensus 131 SnascttnclaPlaKVi~d~--fgI~EgLMtTvha~tat-Qktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeL 207 (285)
T KOG0657|consen 131 SNASCTTNCLAPLAKVIHDN--FGIMEGLMTTVHAITAT-QKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPEL 207 (285)
T ss_pred echhhhhccccchhheeccc--cccccccccceeeeccc-cccccCcccccccccchhhhccccccccHHHHHHHHhHHh
Confidence 99999999888888888887 78888889999999988 445665432 2445799998777653 56777
Q ss_pred hhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHc
Q 015441 276 EQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISY 327 (406)
Q Consensus 276 ~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y 327 (406)
.+ +++.++.|||+. ....+++++++++..-|+++++.+.+.
T Consensus 208 ng----------KLtGMAf~Vpt~-vsVvdl~~~~~k~a~~ddikkvvk~~~ 248 (285)
T KOG0657|consen 208 NG----------KLTGMAFRVPTP-VSVVDLTCHLEKPAKYDDIKKVVKLAS 248 (285)
T ss_pred hC----------ccccceecCCcc-eEeeeeecccccccchHHHHHHHHHhh
Confidence 65 467788999999 888899999999999999999999984
No 48
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.21 E-value=1.7e-06 Score=74.64 Aligned_cols=91 Identities=18% Similarity=0.296 Sum_probs=61.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc---CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~---~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
|||+|+|++|..|+.+++.+.++|++++++..+++. .|+.+.+.-... ....+...++ ++.+..+|+++.++-+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v~~~l-~~~~~~~DVvIDfT~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPVTDDL-EELLEEADVVIDFTNPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBEBS-H-HHHTTH-SEEEEES-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-CcccccchhH-HHhcccCCEEEEcCChH
Confidence 689999999999999999999999999999987665 566555432111 1122222222 22345699999999777
Q ss_pred chHHHHhhC-CCCCEEE
Q 015441 141 TTQEIIKGL-PKSLKIV 156 (406)
Q Consensus 141 ~s~~~~~~l-~~G~~VI 156 (406)
...+.++.+ +.|+.+|
T Consensus 79 ~~~~~~~~~~~~g~~~V 95 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPLV 95 (124)
T ss_dssp HHHHHHHHHHHHT-EEE
T ss_pred HhHHHHHHHHhCCCCEE
Confidence 777777764 6687665
No 49
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.96 E-value=2.1e-05 Score=76.31 Aligned_cols=87 Identities=15% Similarity=0.179 Sum_probs=59.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
|+||+|+|++|.+|+.+++.+.++|+++++++.++..... ... ..+ ++....++ ++.+.++|+|+.|+++...
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~--~~~-~~~---~i~~~~dl-~~ll~~~DvVid~t~p~~~ 73 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL--VGQ-GAL---GVAITDDL-EAVLADADVLIDFTTPEAT 73 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--ccc-CCC---CccccCCH-HHhccCCCEEEECCCHHHH
Confidence 4799999999999999999999899999999987543211 100 011 11111121 1123478999988887777
Q ss_pred HHHHhh-CCCCCEEE
Q 015441 143 QEIIKG-LPKSLKIV 156 (406)
Q Consensus 143 ~~~~~~-l~~G~~VI 156 (406)
.+.+.. +++|+.||
T Consensus 74 ~~~~~~al~~G~~vv 88 (257)
T PRK00048 74 LENLEFALEHGKPLV 88 (257)
T ss_pred HHHHHHHHHcCCCEE
Confidence 777765 58898766
No 50
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.92 E-value=2.2e-05 Score=78.39 Aligned_cols=87 Identities=16% Similarity=0.286 Sum_probs=61.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
++||+|+| +|.+|+.+++.|.++|++|++++.+++..++ +....+.+ . ..+. .+...++|+|+.|+|+..-
T Consensus 3 kIRVgIVG-~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~-~~~~~~v~---~---~~d~-~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 3 KIRAAIVG-YGNLGRSVEKAIQQQPDMELVGVFSRRGAET-LDTETPVY---A---VADD-EKHLDDVDVLILCMGSATD 73 (324)
T ss_pred CcEEEEEe-ecHHHHHHHHHHHhCCCcEEEEEEcCCcHHH-HhhcCCcc---c---cCCH-HHhccCCCEEEEcCCCccC
Confidence 58999999 8999999999999999999999988764221 11101101 0 1111 1123579999999998766
Q ss_pred HHHH-hhCCCCCEEEEc
Q 015441 143 QEII-KGLPKSLKIVDL 158 (406)
Q Consensus 143 ~~~~-~~l~~G~~VIDl 158 (406)
.+.+ +.+++|+.|||-
T Consensus 74 ~~~~~~~L~aG~NVV~s 90 (324)
T TIGR01921 74 IPEQAPYFAQFANTVDS 90 (324)
T ss_pred HHHHHHHHHcCCCEEEC
Confidence 6655 456899999975
No 51
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.83 E-value=3.9e-05 Score=74.82 Aligned_cols=95 Identities=13% Similarity=0.154 Sum_probs=63.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc---CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~---~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
|+||+|+|++|..|+.+++.+.++|+++++++.++.. .++........ .....+...+++. ...++|+|+.|+++
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~-~~~gv~~~~d~~~-l~~~~DvVIdfT~p 78 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGI-GKVGVPVTDDLEA-VETDPDVLIDFTTP 78 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCc-CcCCceeeCCHHH-hcCCCCEEEECCCh
Confidence 4799999999999999999999999999999987432 23332221110 0011111111111 11468999999999
Q ss_pred cchHHHHhh-CCCCCEEEEcC
Q 015441 140 GTTQEIIKG-LPKSLKIVDLS 159 (406)
Q Consensus 140 ~~s~~~~~~-l~~G~~VIDlS 159 (406)
....+.+.. +++|+.||--+
T Consensus 79 ~~~~~~~~~al~~g~~vVigt 99 (266)
T TIGR00036 79 EGVLNHLKFALEHGVRLVVGT 99 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEEC
Confidence 888888875 58888776433
No 52
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.68 E-value=7.5e-05 Score=72.73 Aligned_cols=91 Identities=16% Similarity=0.323 Sum_probs=59.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
|+||+|+|+ |.+|+.+++.|.++|.++++.+..+........... +.....+.++++. -.++|+|+.|+++..-
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~~~~DvVve~t~~~~~ 74 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRAL----GEAVRVVSSVDAL-PQRPDLVVECAGHAAL 74 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhh----ccCCeeeCCHHHh-ccCCCEEEECCCHHHH
Confidence 479999995 999999999999999999998884332211111110 0011112222111 1468999999999877
Q ss_pred HHHHhh-CCCCCEEEEcC
Q 015441 143 QEIIKG-LPKSLKIVDLS 159 (406)
Q Consensus 143 ~~~~~~-l~~G~~VIDlS 159 (406)
.+++.. +++|+.|+-.|
T Consensus 75 ~e~~~~aL~aGk~Vvi~s 92 (265)
T PRK13303 75 KEHVVPILKAGIDCAVIS 92 (265)
T ss_pred HHHHHHHHHcCCCEEEeC
Confidence 777765 58898777544
No 53
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.58 E-value=0.00019 Score=66.67 Aligned_cols=132 Identities=17% Similarity=0.319 Sum_probs=84.3
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC-CCceEEEEec--cCcCCc----ccc--ccccCccccCCCcccccCcccCCCCCE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTA--DRKAGQ----SIG--SVFPHLISQDLPTMVAVKDADFSNVDA 132 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~s--~~~~G~----~i~--~v~p~l~~~~~~~~~~~~~~~~~~vDv 132 (406)
.+.||+|+| +|.+|..|+--++.| .+.|...+.. ..+.|. ++. ..|..+ + .-+.-.+|.++|+
T Consensus 3 sk~kvaiig-sgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~egv---~----~ll~~p~~~di~l 74 (310)
T COG4569 3 SKRKVAIIG-SGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGV---I----GLLNMPEFADIDL 74 (310)
T ss_pred CcceEEEEc-cCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCcchhhHH---H----HHHhCCCCCCcce
Confidence 457999999 999999998877776 6678777664 333331 111 111000 0 0011234578899
Q ss_pred EEEcCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCCh
Q 015441 133 VFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCY 211 (406)
Q Consensus 133 VF~al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~ 211 (406)
||.++..+.-.+.++++ ++|++.|||..+- --|.++|-+|.+.-.+. .+-+.|.+.|-.
T Consensus 75 vfdatsa~~h~~~a~~~ae~gi~~idltpaa------------igp~vvp~~n~~eh~~a--------~nvnmvtcggqa 134 (310)
T COG4569 75 VFDATSAGAHVKNAAALAEAGIRLIDLTPAA------------IGPYVVPVVNLEEHVDA--------LNVNMVTCGGQA 134 (310)
T ss_pred EEeccccchhhcchHhHHhcCCceeecchhc------------cCCeeccccchHHhcCC--------CCcceEeecCcc
Confidence 99999988888888776 7899999998753 13677787777665442 234577777665
Q ss_pred HHHHHHHHHH
Q 015441 212 PTSIQLPLVP 221 (406)
Q Consensus 212 tta~~l~L~P 221 (406)
|.-+..++-.
T Consensus 135 tipiv~avsr 144 (310)
T COG4569 135 TIPIVAAVSR 144 (310)
T ss_pred cchhhhhhhh
Confidence 5444444433
No 54
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00028 Score=68.22 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=63.6
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC---CccccccccCccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA---GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~---G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
+|+||+|+||+|..|+++++++.+.|++++++..++... |+-..+.- .+.....+...++ .....++|+++..+-
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~-g~~~~gv~v~~~~-~~~~~~~DV~IDFT~ 78 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELA-GLGLLGVPVTDDL-LLVKADADVLIDFTT 78 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhc-cccccCceeecch-hhcccCCCEEEECCC
Confidence 478999999999999999999999999999998875432 22112110 0000111111111 112357899999999
Q ss_pred CcchHHHHhhC-CCCC-EEEEcCC
Q 015441 139 HGTTQEIIKGL-PKSL-KIVDLSA 160 (406)
Q Consensus 139 ~~~s~~~~~~l-~~G~-~VIDlSa 160 (406)
+..+.+.++.+ +.|. .||-..+
T Consensus 79 P~~~~~~l~~~~~~~~~lVIGTTG 102 (266)
T COG0289 79 PEATLENLEFALEHGKPLVIGTTG 102 (266)
T ss_pred chhhHHHHHHHHHcCCCeEEECCC
Confidence 88888888764 6665 5775444
No 55
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=97.48 E-value=0.00011 Score=67.19 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=48.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccC--cccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVK--DADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~--~~~~~~vDvVF~al~~~ 140 (406)
++.+.|+||||.+|+.|++.+.+.|.+.-+.+..||..- -...+..+..... ++..++ ..++.+.|+.|||+++.
T Consensus 18 ~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~--d~at~k~v~q~~v-Df~Kl~~~a~~~qg~dV~FcaLgTT 94 (238)
T KOG4039|consen 18 NMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELP--DPATDKVVAQVEV-DFSKLSQLATNEQGPDVLFCALGTT 94 (238)
T ss_pred ccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCC--CccccceeeeEEe-chHHHHHHHhhhcCCceEEEeeccc
Confidence 357999999999999999999999998766655555210 0011111111011 112221 23467999999999876
Q ss_pred ch
Q 015441 141 TT 142 (406)
Q Consensus 141 ~s 142 (406)
..
T Consensus 95 Rg 96 (238)
T KOG4039|consen 95 RG 96 (238)
T ss_pred cc
Confidence 44
No 56
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.27 E-value=0.00017 Score=65.00 Aligned_cols=91 Identities=21% Similarity=0.274 Sum_probs=53.5
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccc--cCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLIS--QDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~--~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
|+|+||||++|+.|++.|.+.+ .++++++.+.. +... .+.+.. .++.....+ ...+.++|+||+|.++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~---~~~~-~~~~~~~~~d~~d~~~~-~~al~~~d~vi~~~~~~~~~ 74 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPS---KAED-SPGVEIIQGDLFDPDSV-KAALKGADAVIHAAGPPPKD 74 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGG---GHHH-CTTEEEEESCTTCHHHH-HHHHTTSSEEEECCHSTTTH
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCch---hccc-ccccccceeeehhhhhh-hhhhhhcchhhhhhhhhccc
Confidence 7899999999999999999776 78888874322 1121 111111 111111111 1234689999999985333
Q ss_pred ----HHHHhhC-CCCC-EEEEcCCcc
Q 015441 143 ----QEIIKGL-PKSL-KIVDLSADF 162 (406)
Q Consensus 143 ----~~~~~~l-~~G~-~VIDlSa~f 162 (406)
+.+.+++ ..|+ ++|-+|+..
T Consensus 75 ~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 75 VDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred ccccccccccccccccccceeeeccc
Confidence 2233333 3454 566566654
No 57
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.12 E-value=0.00079 Score=65.83 Aligned_cols=90 Identities=20% Similarity=0.270 Sum_probs=59.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
++||+|+| .|.+|+.+++.|.. .+.++++.+.++...- +.+...+ .. ...+.++ ++.+.++|+|+.|+|+.
T Consensus 6 ~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~---g~--~~~~~~~-eell~~~D~Vvi~tp~~ 78 (271)
T PRK13302 6 ELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGL---RR--PPPVVPL-DQLATHADIVVEAAPAS 78 (271)
T ss_pred eeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhc---CC--CcccCCH-HHHhcCCCEEEECCCcH
Confidence 47999999 99999999999987 5889999888754211 1111111 00 0001111 11235789999999998
Q ss_pred chHHHHhh-CCCCCEEEEcC
Q 015441 141 TTQEIIKG-LPKSLKIVDLS 159 (406)
Q Consensus 141 ~s~~~~~~-l~~G~~VIDlS 159 (406)
.-.++... +++|+.||..|
T Consensus 79 ~h~e~~~~aL~aGk~Vi~~s 98 (271)
T PRK13302 79 VLRAIVEPVLAAGKKAIVLS 98 (271)
T ss_pred HHHHHHHHHHHcCCcEEEec
Confidence 77787765 58888777554
No 58
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.07 E-value=0.0011 Score=65.68 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=26.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
|||.|.||||++|+.|++.|.++. .+++++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R 32 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG-YQVRCLVR 32 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEEc
Confidence 389999999999999999998764 57777763
No 59
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.02 E-value=0.001 Score=64.67 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=61.4
Q ss_pred CccEEEEECcccHHHHHHHHHHHc--CCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~--hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
|++||+|+| .|.+|+.+.+.|.. .+.++++++.++.. .+ ... +.. ..+.+.++++....+.|+|+.|.++
T Consensus 1 ~~~rvgiIG-~GaIG~~va~~l~~~~~~~~~l~~V~~~~~-~~-~~~----~~~-~~~~~~~l~~ll~~~~DlVVE~A~~ 72 (267)
T PRK13301 1 MTHRIAFIG-LGAIASDVAAGLLADAAQPCQLAALTRNAA-DL-PPA----LAG-RVALLDGLPGLLAWRPDLVVEAAGQ 72 (267)
T ss_pred CceEEEEEC-ccHHHHHHHHHHhcCCCCceEEEEEecCCH-HH-HHH----hhc-cCcccCCHHHHhhcCCCEEEECCCH
Confidence 568999999 99999999998875 35689999876542 11 110 111 1122222222112578999999999
Q ss_pred cchHHHHhh-CCCCCEEEEcC-Ccc
Q 015441 140 GTTQEIIKG-LPKSLKIVDLS-ADF 162 (406)
Q Consensus 140 ~~s~~~~~~-l~~G~~VIDlS-a~f 162 (406)
..-+++.+. |++|+-++=+| ++|
T Consensus 73 ~av~e~~~~iL~~g~dlvv~SvGAL 97 (267)
T PRK13301 73 QAIAEHAEGCLTAGLDMIICSAGAL 97 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEChhHh
Confidence 999999986 58787444355 555
No 60
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.02 E-value=0.00087 Score=65.26 Aligned_cols=90 Identities=16% Similarity=0.286 Sum_probs=58.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC-CCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
|+||+|+| .|.+|+.+++.|.+. +.++++.+.++... .+.+.. .+ ....+.+. ++.+.++|+|+.|+++.
T Consensus 1 mmrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~---~~---~~~~~~~~-~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVG-CGAIASLITKAILSGRINAELYAFYDRNLEKAENLAS---KT---GAKACLSI-DELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHH---hc---CCeeECCH-HHHhcCCCEEEEcCChH
Confidence 46999999 799999999998865 37888888875421 011111 01 01111111 11226799999999988
Q ss_pred chHHHHhh-CCCCCEEEEcCC
Q 015441 141 TTQEIIKG-LPKSLKIVDLSA 160 (406)
Q Consensus 141 ~s~~~~~~-l~~G~~VIDlSa 160 (406)
.-.++++. +++|+.||..|.
T Consensus 73 ~~~~~~~~al~~Gk~Vvv~s~ 93 (265)
T PRK13304 73 AVEEVVPKSLENGKDVIIMSV 93 (265)
T ss_pred HHHHHHHHHHHcCCCEEEEch
Confidence 77787765 577877776553
No 61
>PLN02775 Probable dihydrodipicolinate reductase
Probab=96.80 E-value=0.0034 Score=61.78 Aligned_cols=94 Identities=11% Similarity=0.121 Sum_probs=63.7
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccc-ccccCccccCCCcc--cccCcccC-----CCCC-
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIG-SVFPHLISQDLPTM--VAVKDADF-----SNVD- 131 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~-~v~p~l~~~~~~~~--~~~~~~~~-----~~vD- 131 (406)
.+.+||+|+||+|..|+++++.+.+ ++++|++..+....|..+. ++. +.+++.. .++ .+.+ ...|
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~----g~~v~~~~~~dl-~~~l~~~~~~~~~~ 82 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVC----GVEVRLVGPSER-EAVLSSVKAEYPNL 82 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceec----cceeeeecCccH-HHHHHHhhccCCCE
Confidence 3458999999999999999999999 9999999888776665544 221 1122211 111 0111 2478
Q ss_pred EEEEcCCCcchHHHHhhC-CCCCE-EEEcCC
Q 015441 132 AVFCCLPHGTTQEIIKGL-PKSLK-IVDLSA 160 (406)
Q Consensus 132 vVF~al~~~~s~~~~~~l-~~G~~-VIDlSa 160 (406)
+++..+-+....+.++.+ +.|+. ||-.++
T Consensus 83 VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG 113 (286)
T PLN02775 83 IVVDYTLPDAVNDNAELYCKNGLPFVMGTTG 113 (286)
T ss_pred EEEECCChHHHHHHHHHHHHCCCCEEEECCC
Confidence 889888888888888764 67765 554444
No 62
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.77 E-value=0.00089 Score=56.28 Aligned_cols=85 Identities=22% Similarity=0.457 Sum_probs=56.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcC-CCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccC--CCCCEEEEcCCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~~ 139 (406)
+||+|+| .|.+|+..++.+... |.++++++.++.... +.....+ .++.+.++ ++.+ .++|+|+.|+|+
T Consensus 1 i~v~iiG-~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~------~~~~~~~~-~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 1 IRVGIIG-AGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY------GIPVYTDL-EELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEEES-TSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------TSEEESSH-HHHHHHTTESEEEEESSG
T ss_pred CEEEEEC-CcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh------cccchhHH-HHHHHhhcCCEEEEecCC
Confidence 5899999 699999999877765 899999998765321 1111100 11112211 1112 378999999998
Q ss_pred cchHHHHhh-CCCCCEEE
Q 015441 140 GTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 140 ~~s~~~~~~-l~~G~~VI 156 (406)
..=.+++.. +++|+.|+
T Consensus 73 ~~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 73 SSHAEIAKKALEAGKHVL 90 (120)
T ss_dssp GGHHHHHHHHHHTTSEEE
T ss_pred cchHHHHHHHHHcCCEEE
Confidence 777777765 58888766
No 63
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.75 E-value=0.0015 Score=66.86 Aligned_cols=96 Identities=21% Similarity=0.200 Sum_probs=62.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccc-cccCccc--cCCCcccccCcccCCCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGS-VFPHLIS--QDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~-v~p~l~~--~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
|+||.|+|| |.||+.+++.|+++.+.++. +++|+... .++.. ..+++.. .|......+ .+.+.+.|+|+.|+|
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~-iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al-~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVT-IADRSKEKCARIAELIGGKVEALQVDAADVDAL-VALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHhhccccceeEEecccChHHH-HHHHhcCCEEEEeCC
Confidence 578999997 99999999999987776664 44443211 11211 1111111 011111111 123467799999999
Q ss_pred CcchHHHHhhC-CCCCEEEEcCCc
Q 015441 139 HGTTQEIIKGL-PKSLKIVDLSAD 161 (406)
Q Consensus 139 ~~~s~~~~~~l-~~G~~VIDlSa~ 161 (406)
......+++++ ++|+.++|.|-.
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYY 101 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccC
Confidence 99999999875 889999998864
No 64
>PRK11579 putative oxidoreductase; Provisional
Probab=96.67 E-value=0.0036 Score=62.96 Aligned_cols=86 Identities=21% Similarity=0.429 Sum_probs=57.1
Q ss_pred CccEEEEECcccHHHHH-HHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC--CCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAE-IVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~e-LlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~ 138 (406)
+++||||+| +|.+|+. .++.+...|.++++++.++... +....++ + ...+.++ ++.+ .++|+|+.|+|
T Consensus 3 ~~irvgiiG-~G~i~~~~~~~~~~~~~~~~l~av~d~~~~--~~~~~~~---~--~~~~~~~-~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 3 DKIRVGLIG-YGYASKTFHAPLIAGTPGLELAAVSSSDAT--KVKADWP---T--VTVVSEP-QHLFNDPNIDLIVIPTP 73 (346)
T ss_pred CcceEEEEC-CCHHHHHHHHHHHhhCCCCEEEEEECCCHH--HHHhhCC---C--CceeCCH-HHHhcCCCCCEEEEcCC
Confidence 358999999 8999985 6788888899999999875421 1111111 1 0111111 1112 37899999999
Q ss_pred CcchHHHHhh-CCCCCEEE
Q 015441 139 HGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 139 ~~~s~~~~~~-l~~G~~VI 156 (406)
+..=.+++.+ +++|+.|+
T Consensus 74 ~~~H~~~~~~al~aGkhVl 92 (346)
T PRK11579 74 NDTHFPLAKAALEAGKHVV 92 (346)
T ss_pred cHHHHHHHHHHHHCCCeEE
Confidence 8776777654 68898876
No 65
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.65 E-value=0.0037 Score=63.15 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=55.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCC---------CceEEEEeccCc-----CCccccccccCccc-cCCCccc----cc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHP---------YFGIKLMTADRK-----AGQSIGSVFPHLIS-QDLPTMV----AV 122 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp---------~~elv~l~s~~~-----~G~~i~~v~p~l~~-~~~~~~~----~~ 122 (406)
|++||+|+| .|.||+.++++|.+++ .++++++++++. .|............ ..+..+. ..
T Consensus 1 m~i~V~IiG-~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (341)
T PRK06270 1 MEMKIALIG-FGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEI 79 (341)
T ss_pred CeEEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccC
Confidence 578999999 8999999999998653 689999987431 22211110000000 0000000 00
Q ss_pred Cccc-C--CCCCEEEEcCCCcc-----hHHHHh-hCCCCCEEE
Q 015441 123 KDAD-F--SNVDAVFCCLPHGT-----TQEIIK-GLPKSLKIV 156 (406)
Q Consensus 123 ~~~~-~--~~vDvVF~al~~~~-----s~~~~~-~l~~G~~VI 156 (406)
+.++ + .++|+|+.|+|+.. +.++.. ++++|+.||
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVV 122 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVV 122 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEE
Confidence 1111 1 36899999998633 356654 468999888
No 66
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.64 E-value=0.0025 Score=72.64 Aligned_cols=97 Identities=16% Similarity=0.148 Sum_probs=63.2
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCce------------EEEEeccCcC-CccccccccCcccc--CCCcccccCcc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFG------------IKLMTADRKA-GQSIGSVFPHLISQ--DLPTMVAVKDA 125 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~e------------lv~l~s~~~~-G~~i~~v~p~l~~~--~~~~~~~~~~~ 125 (406)
.+|.||+|+| .|++|+..++.|.++|+++ ++.+++.... .+.+...++..... +....+.+ ..
T Consensus 567 ~~~~rIlVLG-AG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L-~~ 644 (1042)
T PLN02819 567 KKSQNVLILG-AGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESL-LK 644 (1042)
T ss_pred ccCCcEEEEC-CCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHH-HH
Confidence 4467999999 5999999999999888877 6777764321 12222222221110 11111111 11
Q ss_pred cCCCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcC
Q 015441 126 DFSNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLS 159 (406)
Q Consensus 126 ~~~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlS 159 (406)
.+.++|+|+.|+|...-.+++++ +++|+.++|.+
T Consensus 645 ~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 645 YVSQVDVVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred hhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 12579999999999877777776 48899999987
No 67
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=96.61 E-value=0.0017 Score=56.45 Aligned_cols=94 Identities=18% Similarity=0.335 Sum_probs=54.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCc-cccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ-SIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~-~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
..+||+||| .|.+|..|.++|.+.. .++..+.+++.... +.... +.... ...+ .+...++|++|+|+|..
T Consensus 9 ~~l~I~iIG-aGrVG~~La~aL~~ag-~~v~~v~srs~~sa~~a~~~---~~~~~---~~~~-~~~~~~aDlv~iavpDd 79 (127)
T PF10727_consen 9 ARLKIGIIG-AGRVGTALARALARAG-HEVVGVYSRSPASAERAAAF---IGAGA---ILDL-EEILRDADLVFIAVPDD 79 (127)
T ss_dssp ---EEEEEC-TSCCCCHHHHHHHHTT-SEEEEESSCHH-HHHHHHC-----TT--------T-TGGGCC-SEEEE-S-CC
T ss_pred CccEEEEEC-CCHHHHHHHHHHHHCC-CeEEEEEeCCcccccccccc---ccccc---cccc-ccccccCCEEEEEechH
Confidence 347999999 6999999999998654 57888887654321 11110 11111 1111 23346899999999998
Q ss_pred chHHHHhhC-C-----CCCEEEEcCCcccC
Q 015441 141 TTQEIIKGL-P-----KSLKIVDLSADFRL 164 (406)
Q Consensus 141 ~s~~~~~~l-~-----~G~~VIDlSa~fRl 164 (406)
.-.+.++.+ . .|..|+=.|+..-+
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSGa~~~ 109 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSGALGS 109 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-SS--G
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCCCChH
Confidence 777777654 2 47788889998643
No 68
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.58 E-value=0.0055 Score=62.62 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=55.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
+.+|+|+|-+|.+|+.|.+.|.+....+++.+ ++. ++ . .... ++.+.++|+||+|+|-...
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~-D~~------d~------~-----~~~~-~~~v~~aDlVilavPv~~~ 64 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGH-DPA------DP------G-----SLDP-ATLLQRADVLIFSAPIRHT 64 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEE-cCC------cc------c-----cCCH-HHHhcCCCEEEEeCCHHHH
Confidence 36899999889999999999985435566544 221 10 0 0000 2234689999999999888
Q ss_pred HHHHhh-------CCCCCEEEEcCCc
Q 015441 143 QEIIKG-------LPKSLKIVDLSAD 161 (406)
Q Consensus 143 ~~~~~~-------l~~G~~VIDlSa~ 161 (406)
.++++. +..|+.|.|.++-
T Consensus 65 ~~~l~~l~~~~~~l~~~~iVtDVgSv 90 (370)
T PRK08818 65 AALIEEYVALAGGRAAGQLWLDVTSI 90 (370)
T ss_pred HHHHHHHhhhhcCCCCCeEEEECCCC
Confidence 776654 3468999999884
No 69
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=96.42 E-value=0.0056 Score=59.95 Aligned_cols=91 Identities=8% Similarity=0.111 Sum_probs=59.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE-eccCcCCccccccccCccccCCCcc------cccCcccCCC-CC-EEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM-TADRKAGQSIGSVFPHLISQDLPTM------VAVKDADFSN-VD-AVF 134 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l-~s~~~~G~~i~~v~p~l~~~~~~~~------~~~~~~~~~~-vD-vVF 134 (406)
+||.|+||+|..|+++++.+.+ ++++|+.. .+.+..|..+.++. +.+++.. ..+ ...+.. .| +++
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~----g~~v~v~~~~~~~~~l-~~~~~~~~d~VvI 74 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAEVA----GKEILLHGPSEREARI-GEVFAKYPELICI 74 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhhhc----ccceeeeccccccccH-HHHHhhcCCEEEE
Confidence 5899999999999999999888 89999986 55444554444322 1122211 111 111223 78 999
Q ss_pred EcCCCcchHHHHhhC-CCCCE-EEEcCC
Q 015441 135 CCLPHGTTQEIIKGL-PKSLK-IVDLSA 160 (406)
Q Consensus 135 ~al~~~~s~~~~~~l-~~G~~-VIDlSa 160 (406)
..+-+....+.++.+ +.|+. ||-.++
T Consensus 75 DFT~P~~~~~n~~~~~~~gv~~ViGTTG 102 (275)
T TIGR02130 75 DYTHPSAVNDNAAFYGKHGIPFVMGTTG 102 (275)
T ss_pred ECCChHHHHHHHHHHHHCCCCEEEcCCC
Confidence 999888888888765 67775 443443
No 70
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.41 E-value=0.0051 Score=62.91 Aligned_cols=83 Identities=18% Similarity=0.359 Sum_probs=56.9
Q ss_pred ccccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEc
Q 015441 57 TQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 57 ~~~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
.+.+.++.+|+|+|++|.+|+.+.+.|.... .++..+ +++. + + .. .+.+.++|+||+|
T Consensus 92 ~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~-d~~~-----------~---~--~~----~~~~~~aDlVila 149 (374)
T PRK11199 92 KTLNPDLRPVVIVGGKGQLGRLFAKMLTLSG-YQVRIL-EQDD-----------W---D--RA----EDILADAGMVIVS 149 (374)
T ss_pred cccCcccceEEEEcCCChhhHHHHHHHHHCC-CeEEEe-CCCc-----------c---h--hH----HHHHhcCCEEEEe
Confidence 4444456799999999999999999998643 344333 3221 0 0 00 1223579999999
Q ss_pred CCCcchHHHHhhC---CCCCEEEEcCCc
Q 015441 137 LPHGTTQEIIKGL---PKSLKIVDLSAD 161 (406)
Q Consensus 137 l~~~~s~~~~~~l---~~G~~VIDlSa~ 161 (406)
+|.....+..+.+ ..|+.|+|+++-
T Consensus 150 vP~~~~~~~~~~l~~l~~~~iv~Dv~Sv 177 (374)
T PRK11199 150 VPIHLTEEVIARLPPLPEDCILVDLTSV 177 (374)
T ss_pred CcHHHHHHHHHHHhCCCCCcEEEECCCc
Confidence 9988877766543 468999999883
No 71
>PLN02427 UDP-apiose/xylose synthase
Probab=96.35 E-value=0.0054 Score=62.32 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=30.2
Q ss_pred ccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 59 ~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++.+++||.|.||||++|+.|++.|.+....+++++.
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 4555679999999999999999999876446777774
No 72
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.34 E-value=0.0075 Score=62.75 Aligned_cols=86 Identities=22% Similarity=0.338 Sum_probs=54.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC---------CceEEEEeccCcCCccccccccCccccCCCcccccCcccC--CCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP---------YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVD 131 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp---------~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vD 131 (406)
++||||+| .|.+|+.++++|.+|+ .++++++.+++.. +.-... +.. .....+. ++.+ .++|
T Consensus 3 ~i~VgiiG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~-~~~~~~---~~~--~~~~~d~-~~ll~d~~iD 74 (426)
T PRK06349 3 PLKVGLLG-LGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE-KDRGVD---LPG--ILLTTDP-EELVNDPDID 74 (426)
T ss_pred eEEEEEEe-eCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh-hccCCC---Ccc--cceeCCH-HHHhhCCCCC
Confidence 58999999 9999999999997653 6789998875421 110000 000 0001111 1111 3689
Q ss_pred EEEEcCCC-cchHHHHh-hCCCCCEEE
Q 015441 132 AVFCCLPH-GTTQEIIK-GLPKSLKIV 156 (406)
Q Consensus 132 vVF~al~~-~~s~~~~~-~l~~G~~VI 156 (406)
+|+.|++. ....++.. ++++|+.||
T Consensus 75 vVve~tg~~~~~~~~~~~aL~~GkhVV 101 (426)
T PRK06349 75 IVVELMGGIEPARELILKALEAGKHVV 101 (426)
T ss_pred EEEECCCCchHHHHHHHHHHHCCCeEE
Confidence 99999875 44566774 568999888
No 73
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.31 E-value=0.0029 Score=64.50 Aligned_cols=93 Identities=20% Similarity=0.235 Sum_probs=52.6
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccc--cccCccc--cCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGS--VFPHLIS--QDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~--v~p~l~~--~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
|.|+|+ |++|+.+++.|.+++..+-+.+++++... +.+.. ....+.. .+......+ ...+.++|+|+.|+|..
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l-~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESL-AELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHH-HHHHTTSSEEEE-SSGG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHH-HHHHhcCCEEEECCccc
Confidence 789999 99999999999998877444555543211 11110 0011111 111111111 11247899999999988
Q ss_pred chHHHHhhC-CCCCEEEEcCC
Q 015441 141 TTQEIIKGL-PKSLKIVDLSA 160 (406)
Q Consensus 141 ~s~~~~~~l-~~G~~VIDlSa 160 (406)
....+++++ ++|+..||.|.
T Consensus 79 ~~~~v~~~~i~~g~~yvD~~~ 99 (386)
T PF03435_consen 79 FGEPVARACIEAGVHYVDTSY 99 (386)
T ss_dssp GHHHHHHHHHHHT-EEEESS-
T ss_pred hhHHHHHHHHHhCCCeeccch
Confidence 777788764 78999999554
No 74
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.30 E-value=0.0094 Score=55.69 Aligned_cols=61 Identities=18% Similarity=0.365 Sum_probs=47.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
+||+|+|++|..|+.+.+.+.+. .+++. +.++|+||+|+|-....
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~-g~~v~----------------------------------~~~~DlVilavPv~~~~ 45 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN-GLGVY----------------------------------IKKADHAFLSVPIDAAL 45 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC-CCEEE----------------------------------ECCCCEEEEeCCHHHHH
Confidence 48999999999999999998743 22221 13689999999999888
Q ss_pred HHHhhCCCCCEEEEcCCc
Q 015441 144 EIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~~l~~G~~VIDlSa~ 161 (406)
++++.+.. .|+|.++-
T Consensus 46 ~~i~~~~~--~v~Dv~Sv 61 (197)
T PRK06444 46 NYIESYDN--NFVEISSV 61 (197)
T ss_pred HHHHHhCC--eEEecccc
Confidence 88876542 58899884
No 75
>PLN02256 arogenate dehydrogenase
Probab=96.28 E-value=0.0082 Score=59.75 Aligned_cols=88 Identities=18% Similarity=0.323 Sum_probs=54.6
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC-CCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~al~~~ 140 (406)
++++|+|+| .|.+|+.+.+.|.+.. .++..+..+ .. ...... + + .....+. .+.. .++|+||+|+|..
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~~G-~~V~~~d~~-~~-~~~a~~---~-g--v~~~~~~-~e~~~~~aDvVilavp~~ 103 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVKQG-HTVLATSRS-DY-SDIAAE---L-G--VSFFRDP-DDFCEEHPDVVLLCTSIL 103 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCC-CEEEEEECc-cH-HHHHHH---c-C--CeeeCCH-HHHhhCCCCEEEEecCHH
Confidence 457899999 8999999999998654 466655432 21 111100 1 1 1111111 1111 3689999999988
Q ss_pred chHHHHhhC-----CCCCEEEEcCC
Q 015441 141 TTQEIIKGL-----PKSLKIVDLSA 160 (406)
Q Consensus 141 ~s~~~~~~l-----~~G~~VIDlSa 160 (406)
...++++.+ ..++.|+|.++
T Consensus 104 ~~~~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 104 STEAVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred HHHHHHHhhhhhccCCCCEEEecCC
Confidence 777766543 35789999988
No 76
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.24 E-value=0.011 Score=58.29 Aligned_cols=94 Identities=24% Similarity=0.309 Sum_probs=55.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
++++|+|+| .|.+|+.+.+.|.. +....+... +++.+....... +...+ ............++|+||+|+|-.
T Consensus 2 ~~~~v~IvG-~GliG~s~a~~l~~~g~~v~i~g~--d~~~~~~~~a~~--lgv~d-~~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 2 ASMKVGIVG-LGLMGGSLARALKEAGLVVRIIGR--DRSAATLKAALE--LGVID-ELTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred CCcEEEEEC-CchHHHHHHHHHHHcCCeEEEEee--cCcHHHHHHHhh--cCccc-ccccchhhhhcccCCEEEEeccHH
Confidence 457899999 99999999999984 444444333 222111111000 00000 000010012235689999999998
Q ss_pred chHHHHhhC----CCCCEEEEcCCc
Q 015441 141 TTQEIIKGL----PKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~~~l----~~G~~VIDlSa~ 161 (406)
.+.++++.+ +.|+.|.|.++.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~ 100 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSV 100 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccc
Confidence 887777653 569999999885
No 77
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.23 E-value=0.0089 Score=55.16 Aligned_cols=71 Identities=18% Similarity=0.370 Sum_probs=42.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCcc--ccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLI--SQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~--~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
|||||+||||.+|.++++-....- .|+++++...+ |--. .+.+. ..|+-+...+ .+++.+.|+|+.+-+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivRn~~--K~~~--~~~~~i~q~Difd~~~~-a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIVRNAS--KLAA--RQGVTILQKDIFDLTSL-ASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC-CeeEEEEeChH--hccc--cccceeecccccChhhh-HhhhcCCceEEEeccCC
Confidence 589999999999999999777543 47888873221 1100 01111 1222212111 25667899999987655
No 78
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.18 E-value=0.0032 Score=51.02 Aligned_cols=90 Identities=13% Similarity=0.256 Sum_probs=53.1
Q ss_pred EEEEECcccHHHHHHHHHHHcCC--CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 65 RIGLLGASGYTGAEIVRLLANHP--YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp--~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
||+|+| +|..|..|++-|.++. ..++..+++++.. +..+....+. .........+.++.+|+||+|.+....
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~--~~~~~~~~~~---~~~~~~~~~~~~~~advvilav~p~~~ 74 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSPE--KAAELAKEYG---VQATADDNEEAAQEADVVILAVKPQQL 74 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSHH--HHHHHHHHCT---TEEESEEHHHHHHHTSEEEE-S-GGGH
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcHH--HHHHHHHhhc---cccccCChHHhhccCCEEEEEECHHHH
Confidence 799998 9999999999887653 3466555454321 1111110111 000110012223578999999999988
Q ss_pred HHHHhhC---CCCCEEEEcCC
Q 015441 143 QEIIKGL---PKSLKIVDLSA 160 (406)
Q Consensus 143 ~~~~~~l---~~G~~VIDlSa 160 (406)
.+.++.+ .++..|||..+
T Consensus 75 ~~v~~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 75 PEVLSEIPHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHHHHHHHHTTSEEEEEST
T ss_pred HHHHHHHhhccCCCEEEEeCC
Confidence 8877654 46788998764
No 79
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.18 E-value=0.003 Score=59.36 Aligned_cols=73 Identities=26% Similarity=0.415 Sum_probs=43.4
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC--CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA--GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~--G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
|+|+||||.+|+.+++.|.. +.++++++..+... -+.+...--.+...++.....+ ...+.++|.||++++..
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l-~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESL-VAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHH-HHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHH-HHHHcCCceEEeecCcc
Confidence 78999999999999999988 67889888753311 0111110000001111111111 22368999999999943
No 80
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.16 E-value=0.0063 Score=61.44 Aligned_cols=91 Identities=16% Similarity=0.257 Sum_probs=53.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcC-CCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|.|+||+|.+|+++++.|..+ ...+++.+. +... ++......+...+ +..+ .+.+.++|+||.+++....
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~-R~~~--rl~~La~el~~~~---i~~l-~~~l~~aDiVv~~ts~~~~ 228 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVA-RQQE--RLQELQAELGGGK---ILSL-EEALPEADIVVWVASMPKG 228 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEc-CCHH--HHHHHHHHhcccc---HHhH-HHHHccCCEEEECCcCCcC
Confidence 57999999999999999999753 334665554 3211 1111110111111 1112 1234689999999975332
Q ss_pred HHH-HhhCCCCCEEEEcCCc
Q 015441 143 QEI-IKGLPKSLKIVDLSAD 161 (406)
Q Consensus 143 ~~~-~~~l~~G~~VIDlSa~ 161 (406)
..+ ...+.+++.|||++=+
T Consensus 229 ~~I~~~~l~~~~~viDiAvP 248 (340)
T PRK14982 229 VEIDPETLKKPCLMIDGGYP 248 (340)
T ss_pred CcCCHHHhCCCeEEEEecCC
Confidence 111 1235678999999865
No 81
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.11 E-value=0.0076 Score=55.51 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=52.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCcc---ccCCCcccccCc----ccCCCCCEEEEc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLI---SQDLPTMVAVKD----ADFSNVDAVFCC 136 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~---~~~~~~~~~~~~----~~~~~vDvVF~a 136 (406)
.++.|+|+||.+|+.+++.|..+. .+++.+ +++. .+.......+. +..+......+. +.+.++|+||.|
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~-~R~~--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~a 104 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG-ARVVLV-GRDL--ERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEE-cCCH--HHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence 589999999999999999998764 466555 4332 11111100000 000000000111 224689999999
Q ss_pred CCCcchHHH-Hhh-CCCCCEEEEcCCc
Q 015441 137 LPHGTTQEI-IKG-LPKSLKIVDLSAD 161 (406)
Q Consensus 137 l~~~~s~~~-~~~-l~~G~~VIDlSa~ 161 (406)
++.+..... .+. ...+..|+|+...
T Consensus 105 t~~g~~~~~~~~~~~~~~~vv~D~~~~ 131 (194)
T cd01078 105 GAAGVELLEKLAWAPKPLAVAADVNAV 131 (194)
T ss_pred CCCCceechhhhcccCceeEEEEccCC
Confidence 998773111 122 2346789998764
No 82
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.00 E-value=0.0044 Score=54.67 Aligned_cols=75 Identities=16% Similarity=0.309 Sum_probs=42.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccC--cCCccccccccC-ccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADR--KAGQSIGSVFPH-LISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~--~~G~~i~~v~p~-l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
+||+|+||+|.||..++-.|...+-. |++.+-... ..|...+.-|-. +..... .+..-+.+++.++|+|+++.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~-~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPV-RITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE-EEEESSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccc-ccccccccccccccEEEEeccc
Confidence 58999999999999999999866654 565554321 122222211100 000011 1111224456789999888764
No 83
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.00 E-value=0.016 Score=58.19 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=27.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCc------eEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYF------GIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~------elv~l~ 95 (406)
..||+|+||+|++|..++..|...+.+ +++++.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D 40 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLD 40 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEE
Confidence 478999999999999999999875543 777764
No 84
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=95.99 E-value=0.011 Score=56.04 Aligned_cols=88 Identities=14% Similarity=0.251 Sum_probs=58.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcC-CCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
++|+|+| .|.+|+.+++++.+. -.+|++++.++... +......++..... ..+ ++...++|+++.|..+..-
T Consensus 1 l~vgiVG-cGaIG~~l~e~v~~~~~~~e~v~v~D~~~e--k~~~~~~~~~~~~~---s~i-de~~~~~DlvVEaAS~~Av 73 (255)
T COG1712 1 LKVGIVG-CGAIGKFLLELVRDGRVDFELVAVYDRDEE--KAKELEASVGRRCV---SDI-DELIAEVDLVVEAASPEAV 73 (255)
T ss_pred CeEEEEe-ccHHHHHHHHHHhcCCcceeEEEEecCCHH--HHHHHHhhcCCCcc---ccH-HHHhhccceeeeeCCHHHH
Confidence 4799999 999999999999865 35789999876431 11111112222211 222 2223789999999999988
Q ss_pred HHHHhh-CCCCC--EEEEc
Q 015441 143 QEIIKG-LPKSL--KIVDL 158 (406)
Q Consensus 143 ~~~~~~-l~~G~--~VIDl 158 (406)
+++.++ |++|+ .|++.
T Consensus 74 ~e~~~~~L~~g~d~iV~SV 92 (255)
T COG1712 74 REYVPKILKAGIDVIVMSV 92 (255)
T ss_pred HHHhHHHHhcCCCEEEEec
Confidence 998875 68876 44443
No 85
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.97 E-value=0.013 Score=57.33 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=52.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
+||+|+| .|.+|+.+.+.|..+. .++..+. ++.. ....... . + ..... ..+.+...++|+||+|+|.....
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g-~~V~~~d-~~~~--~~~~a~~-~-g-~~~~~-~~~~~~~~~aDlVilavp~~~~~ 71 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLG-HTVYGVS-RRES--TCERAIE-R-G-LVDEA-STDLSLLKDCDLVILALPIGLLL 71 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCC-CEEEEEE-CCHH--HHHHHHH-C-C-Ccccc-cCCHhHhcCCCEEEEcCCHHHHH
Confidence 3799999 9999999999998653 4555443 3211 1111000 0 0 00001 01112346899999999977765
Q ss_pred HHHhh----CCCCCEEEEcCCc
Q 015441 144 EIIKG----LPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~~----l~~G~~VIDlSa~ 161 (406)
+..+. +..++.|+|.++-
T Consensus 72 ~~~~~l~~~l~~~~ii~d~~Sv 93 (279)
T PRK07417 72 PPSEQLIPALPPEAIVTDVGSV 93 (279)
T ss_pred HHHHHHHHhCCCCcEEEeCcch
Confidence 55543 3457888998773
No 86
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.97 E-value=0.012 Score=57.83 Aligned_cols=91 Identities=16% Similarity=0.336 Sum_probs=52.6
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
|++||+|+| .|.+|+.+.+.|..+ ..++... +++.. +... +........... .+.+.++|+||+|+|...
T Consensus 1 ~~~~IgviG-~G~mG~~~a~~l~~~-g~~v~~~-d~~~~--~~~~----~~~~g~~~~~~~-~e~~~~~d~vi~~vp~~~ 70 (296)
T PRK11559 1 MTMKVGFIG-LGIMGKPMSKNLLKA-GYSLVVY-DRNPE--AVAE----VIAAGAETASTA-KAVAEQCDVIITMLPNSP 70 (296)
T ss_pred CCceEEEEc-cCHHHHHHHHHHHHC-CCeEEEE-cCCHH--HHHH----HHHCCCeecCCH-HHHHhcCCEEEEeCCCHH
Confidence 457899999 899999999998864 3455443 33211 1111 000011101111 122367999999999654
Q ss_pred hHH-H-------HhhCCCCCEEEEcCCcc
Q 015441 142 TQE-I-------IKGLPKSLKIVDLSADF 162 (406)
Q Consensus 142 s~~-~-------~~~l~~G~~VIDlSa~f 162 (406)
..+ . .+.+..|..+||.|+..
T Consensus 71 ~~~~v~~~~~~~~~~~~~g~iiid~st~~ 99 (296)
T PRK11559 71 HVKEVALGENGIIEGAKPGTVVIDMSSIA 99 (296)
T ss_pred HHHHHHcCcchHhhcCCCCcEEEECCCCC
Confidence 422 2 12235678899988753
No 87
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=95.97 E-value=0.014 Score=56.97 Aligned_cols=162 Identities=17% Similarity=0.279 Sum_probs=96.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC--ceEEEEeccCcCCcc--ccccccCccccCCCcccccCc-ccCCCCCEEEEcC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY--FGIKLMTADRKAGQS--IGSVFPHLISQDLPTMVAVKD-ADFSNVDAVFCCL 137 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~--~elv~l~s~~~~G~~--i~~v~p~l~~~~~~~~~~~~~-~~~~~vDvVF~al 137 (406)
|+||+++| .|-.|+.+++-|.+... -+-+.++.+.. .+. +..-+ .. ....+. +....+|+||+|.
T Consensus 1 ~~~IgfIG-~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~-e~~~~l~~~~---g~-----~~~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIG-AGNMGEAILSGLLKSGALPPEEIIVTNRSE-EKRAALAAEY---GV-----VTTTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEc-cCHHHHHHHHHHHhcCCCCcceEEEeCCCH-HHHHHHHHHc---CC-----cccCcHHHHHhhCCEEEEEe
Confidence 46899999 99999999998886552 23334443322 211 22111 11 101112 2235799999999
Q ss_pred CCcchHHHHhhCC---CCCEEEEcCCcccCCCccchhhhcCC-C--CCCccchhhhhccccccchhhccCCcEEecCCCh
Q 015441 138 PHGTTQEIIKGLP---KSLKIVDLSADFRLRDVSEYEEWYGQ-P--HIAPDLQKEAVYGLTEISREDIKNARLVANPGCY 211 (406)
Q Consensus 138 ~~~~s~~~~~~l~---~G~~VIDlSa~fRl~~~~~~~~~y~~-~--~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~ 211 (406)
.+-.-.+.++.+. ++..||+..+--++ +.+++|.+. + ...|......-.| -.-+..+..|+
T Consensus 71 KPq~~~~vl~~l~~~~~~~lvISiaAGv~~---~~l~~~l~~~~vvR~MPNt~a~vg~g----------~t~i~~~~~~~ 137 (266)
T COG0345 71 KPQDLEEVLSKLKPLTKDKLVISIAAGVSI---ETLERLLGGLRVVRVMPNTPALVGAG----------VTAISANANVS 137 (266)
T ss_pred ChHhHHHHHHHhhcccCCCEEEEEeCCCCH---HHHHHHcCCCceEEeCCChHHHHcCc----------ceeeecCccCC
Confidence 9888878777663 57889998877654 457888861 1 2335444333222 12456668888
Q ss_pred HHHHHHHHHHHHHccC-CCcceEEEEEeeccCccCcc
Q 015441 212 PTSIQLPLVPLIQANL-IQYRNIIIDAKSGVSGAGRG 247 (406)
Q Consensus 212 tta~~l~L~PL~~~~l-~~i~~i~v~t~~gvSGaG~~ 247 (406)
......+..-|-.-|- +.++.-.+++..++||+|-.
T Consensus 138 ~~~~~~v~~l~~~~G~v~~v~E~~~da~TaisGSgPA 174 (266)
T COG0345 138 EEDKAFVEALLSAVGKVVEVEESLMDAVTALSGSGPA 174 (266)
T ss_pred HHHHHHHHHHHHhcCCeEEechHHhhHHHHHhcCCHH
Confidence 7776554444432221 12334468999999999754
No 88
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.95 E-value=0.0085 Score=55.30 Aligned_cols=98 Identities=19% Similarity=0.232 Sum_probs=65.5
Q ss_pred cCCccEEEEECcccHHHHHHHHHHH-cCCCceEEEEec--cCcCCccccccccCccccCCCcccccCcccCCCCCEEEEc
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTA--DRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~-~hp~~elv~l~s--~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
.+++.+|.|+| -|-.|+.|+..-- .+-.++++.+.+ +...|+.+.. +...++..++.. -. -.++|++++|
T Consensus 81 ~~~~tnviiVG-~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~----v~V~~~d~le~~-v~-~~dv~iaiLt 153 (211)
T COG2344 81 QDKTTNVIIVG-VGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD----VPVYDLDDLEKF-VK-KNDVEIAILT 153 (211)
T ss_pred CCcceeEEEEc-cChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCC----eeeechHHHHHH-HH-hcCccEEEEE
Confidence 46678999999 8999999876432 356788988876 3345665553 111122111110 00 0389999999
Q ss_pred CCCcchHHHHhhC-CCCCEEEEcCCcccC
Q 015441 137 LPHGTTQEIIKGL-PKSLKIVDLSADFRL 164 (406)
Q Consensus 137 l~~~~s~~~~~~l-~~G~~VIDlSa~fRl 164 (406)
.|...+++.+..+ ++|++-|=+-++-|+
T Consensus 154 VPa~~AQ~vad~Lv~aGVkGIlNFtPv~l 182 (211)
T COG2344 154 VPAEHAQEVADRLVKAGVKGILNFTPVRL 182 (211)
T ss_pred ccHHHHHHHHHHHHHcCCceEEeccceEe
Confidence 9999999999887 899998844444444
No 89
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.94 E-value=0.016 Score=58.81 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=31.1
Q ss_pred CcccccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 55 GKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 55 ~~~~~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+...+.+.+||.|.||||++|+.|++.|.++. .+++.+.
T Consensus 13 ~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~ 52 (370)
T PLN02695 13 REPYWPSEKLRICITGAGGFIASHIARRLKAEG-HYIIASD 52 (370)
T ss_pred CCCCCCCCCCEEEEECCccHHHHHHHHHHHhCC-CEEEEEE
Confidence 334444556799999999999999999998764 5777765
No 90
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=95.90 E-value=0.012 Score=58.45 Aligned_cols=89 Identities=18% Similarity=0.342 Sum_probs=59.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEcC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCL 137 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al 137 (406)
+++||||+|+.|+.++..+..+.+.+. ++++++.++... .+.+...++ . . ..+.++ ++.+ .++|+|+.|+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~---~-~-~~~~~~-~~ll~~~~iD~V~Iat 75 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG---I-A-KAYTDL-EELLADPDIDAVYIAT 75 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC---C-C-cccCCH-HHHhcCCCCCEEEEcC
Confidence 578999999777888889999998887 699999875432 122222111 0 0 011111 1111 3589999999
Q ss_pred CCcchHHHHh-hCCCCCEEE
Q 015441 138 PHGTTQEIIK-GLPKSLKIV 156 (406)
Q Consensus 138 ~~~~s~~~~~-~l~~G~~VI 156 (406)
|+..=.+++. ++++|+.|+
T Consensus 76 p~~~H~e~~~~AL~aGkhVl 95 (342)
T COG0673 76 PNALHAELALAALEAGKHVL 95 (342)
T ss_pred CChhhHHHHHHHHhcCCEEE
Confidence 9887777775 468999887
No 91
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=95.85 E-value=0.018 Score=54.21 Aligned_cols=93 Identities=18% Similarity=0.260 Sum_probs=60.2
Q ss_pred ccEEEEECcccHHHHHHHHHHH-cCCCceEEEEeccCc--CCccccccccCccccCCCcccccCcccC--CCCCEEEEcC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADRK--AGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCL 137 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~-~hp~~elv~l~s~~~--~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al 137 (406)
+.+|+|+| +|.+|+.+++.+. ..+.++++++.+++. .|+.+.. + .+.....+ .+.+ .++|+|+.|+
T Consensus 84 ~~rV~IIG-aG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g----~---~v~~~~~l-~~li~~~~iD~ViIa~ 154 (213)
T PRK05472 84 TWNVALVG-AGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGG----I---PVYHIDEL-EEVVKENDIEIGILTV 154 (213)
T ss_pred CcEEEEEC-CCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCC----e---EEcCHHHH-HHHHHHCCCCEEEEeC
Confidence 46899999 9999999999753 345789999887532 2222211 0 01011111 1111 3699999999
Q ss_pred CCcchHHHHhhC-CCCCEEEEcCCcccC
Q 015441 138 PHGTTQEIIKGL-PKSLKIVDLSADFRL 164 (406)
Q Consensus 138 ~~~~s~~~~~~l-~~G~~VIDlSa~fRl 164 (406)
|.....++...+ ++|++.|.+-.++.+
T Consensus 155 P~~~~~~i~~~l~~~Gi~~il~~~p~~~ 182 (213)
T PRK05472 155 PAEAAQEVADRLVEAGIKGILNFAPVRL 182 (213)
T ss_pred CchhHHHHHHHHHHcCCCEEeecCceee
Confidence 998887777665 789877766555554
No 92
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.83 E-value=0.0066 Score=51.30 Aligned_cols=82 Identities=12% Similarity=0.193 Sum_probs=49.0
Q ss_pred ccHHHHHHHHHHHcCC---CceEEEEeccCc-CCccccccccCccccCCCcccccCcccCC--CCCEEEEcCCCcchHHH
Q 015441 72 SGYTGAEIVRLLANHP---YFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFS--NVDAVFCCLPHGTTQEI 145 (406)
Q Consensus 72 TG~vG~eLlrlL~~hp---~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~--~vDvVF~al~~~~s~~~ 145 (406)
.|.||+.|+++|..+. .++++.+.+++. ........ +. ......++ ++.+. +.|+|+.|++.....++
T Consensus 2 ~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~---~~--~~~~~~~~-~~~~~~~~~dvvVE~t~~~~~~~~ 75 (117)
T PF03447_consen 2 FGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAAS---FP--DEAFTTDL-EELIDDPDIDVVVECTSSEAVAEY 75 (117)
T ss_dssp -SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHH---HT--HSCEESSH-HHHHTHTT-SEEEE-SSCHHHHHH
T ss_pred CCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhh---cc--cccccCCH-HHHhcCcCCCEEEECCCchHHHHH
Confidence 7999999999999765 789999988661 00110000 00 00111111 11112 78999999999888887
Q ss_pred Hhh-CCCCCEEEEcC
Q 015441 146 IKG-LPKSLKIVDLS 159 (406)
Q Consensus 146 ~~~-l~~G~~VIDlS 159 (406)
.+. +++|+.||-.|
T Consensus 76 ~~~~L~~G~~VVt~n 90 (117)
T PF03447_consen 76 YEKALERGKHVVTAN 90 (117)
T ss_dssp HHHHHHTTCEEEES-
T ss_pred HHHHHHCCCeEEEEC
Confidence 765 68999888443
No 93
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.81 E-value=0.013 Score=62.87 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=25.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
..|.|.||+|++|+.+++.|+.. ..+++++.
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~-G~~Vval~ 111 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKL-GFRVRAGV 111 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCeEEEEe
Confidence 46999999999999999999865 35676664
No 94
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.77 E-value=0.022 Score=55.05 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=24.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+|.|.||||++|+.+++.|.+. ..+++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g~~V~~~~ 30 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-SVPFLVAS 30 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-CCcEEEEe
Confidence 4899999999999999998864 35676665
No 95
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.76 E-value=0.011 Score=59.73 Aligned_cols=86 Identities=13% Similarity=0.285 Sum_probs=52.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCC-CceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCC-
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP- 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~- 138 (406)
.++||+|+|+ |+ |+..++.+.+.| .++++++.++... .+.+.+-+. ++.+.+. ++.+.+.|+++.+.+
T Consensus 2 ~~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~g------i~~y~~~-eell~d~Di~~V~ipt 72 (343)
T TIGR01761 2 DVQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILAQGSERSRALAHRLG------VPLYCEV-EELPDDIDIACVVVRS 72 (343)
T ss_pred CCcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhC------CCccCCH-HHHhcCCCEEEEEeCC
Confidence 3589999997 76 999999998888 8999999986532 222222221 1112222 122345566666553
Q ss_pred ---CcchHHHHhh-CCCCCEEE
Q 015441 139 ---HGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 139 ---~~~s~~~~~~-l~~G~~VI 156 (406)
+..=.+++.+ +++|+.|+
T Consensus 73 ~~P~~~H~e~a~~aL~aGkHVL 94 (343)
T TIGR01761 73 AIVGGQGSALARALLARGIHVL 94 (343)
T ss_pred CCCCccHHHHHHHHHhCCCeEE
Confidence 3343566654 68999887
No 96
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.73 E-value=0.0052 Score=55.19 Aligned_cols=87 Identities=21% Similarity=0.431 Sum_probs=48.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCccc-CCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDAD-FSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~-~~~vDvVF~al~~~ 140 (406)
|+||+++| .|..|..+.+.|.++. +++... +++. .-+++. ........ +..+ ..++|+||.|+++.
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g-~~v~~~-d~~~~~~~~~~-------~~g~~~~~--s~~e~~~~~dvvi~~v~~~ 68 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAG-YEVTVY-DRSPEKAEALA-------EAGAEVAD--SPAEAAEQADVVILCVPDD 68 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTT-TEEEEE-ESSHHHHHHHH-------HTTEEEES--SHHHHHHHBSEEEE-SSSH
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcC-CeEEee-ccchhhhhhhH-------Hhhhhhhh--hhhhHhhcccceEeecccc
Confidence 57999999 8999999999998653 566554 3321 111111 00111011 1222 35679999999986
Q ss_pred ch-HHHH------hhCCCCCEEEEcCCc
Q 015441 141 TT-QEII------KGLPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s-~~~~------~~l~~G~~VIDlSa~ 161 (406)
.+ .+.. +.+..|..+||+|..
T Consensus 69 ~~v~~v~~~~~i~~~l~~g~iiid~sT~ 96 (163)
T PF03446_consen 69 DAVEAVLFGENILAGLRPGKIIIDMSTI 96 (163)
T ss_dssp HHHHHHHHCTTHGGGS-TTEEEEE-SS-
T ss_pred hhhhhhhhhhHHhhccccceEEEecCCc
Confidence 55 3333 234578899999875
No 97
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.71 E-value=0.011 Score=53.86 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=50.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC----
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH---- 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~---- 139 (406)
.+|+|+| +|.||+++.++|..+- +++.++............ . + . ...++ ++.+..+|+|++++|.
T Consensus 37 ~tvgIiG-~G~IG~~vA~~l~~fG-~~V~~~d~~~~~~~~~~~----~-~--~-~~~~l-~ell~~aDiv~~~~plt~~T 105 (178)
T PF02826_consen 37 KTVGIIG-YGRIGRAVARRLKAFG-MRVIGYDRSPKPEEGADE----F-G--V-EYVSL-DELLAQADIVSLHLPLTPET 105 (178)
T ss_dssp SEEEEES-TSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHH----T-T--E-EESSH-HHHHHH-SEEEE-SSSSTTT
T ss_pred CEEEEEE-EcCCcCeEeeeeecCC-ceeEEecccCChhhhccc----c-c--c-eeeeh-hhhcchhhhhhhhhcccccc
Confidence 5799999 9999999999999764 577666533221110010 0 0 0 01112 2234679999999993
Q ss_pred --cchHHHHhhCCCCCEEEEcC
Q 015441 140 --GTTQEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 140 --~~s~~~~~~l~~G~~VIDlS 159 (406)
-+.++...+++.|..+|..+
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~a 127 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVA 127 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESS
T ss_pred ceeeeeeeeeccccceEEEecc
Confidence 33355556667888999544
No 98
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=95.69 E-value=0.025 Score=56.32 Aligned_cols=32 Identities=31% Similarity=0.587 Sum_probs=26.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~ 95 (406)
+||+|+||||++|..++..|...+.. +++++.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999876654 566664
No 99
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.67 E-value=0.017 Score=57.00 Aligned_cols=91 Identities=22% Similarity=0.344 Sum_probs=55.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-h
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-s 142 (406)
.+|+|+| .|.+|+.+++.|..+. .++... +++.. +..... ........ ..++ .+.+.++|+||.|+|... .
T Consensus 152 k~v~IiG-~G~iG~avA~~L~~~G-~~V~v~-~R~~~--~~~~~~-~~g~~~~~-~~~l-~~~l~~aDiVint~P~~ii~ 223 (287)
T TIGR02853 152 SNVMVLG-FGRTGMTIARTFSALG-ARVFVG-ARSSA--DLARIT-EMGLIPFP-LNKL-EEKVAEIDIVINTIPALVLT 223 (287)
T ss_pred CEEEEEc-ChHHHHHHHHHHHHCC-CEEEEE-eCCHH--HHHHHH-HCCCeeec-HHHH-HHHhccCCEEEECCChHHhC
Confidence 4799999 7999999999998775 466544 33321 111000 00000111 1111 223468999999999764 3
Q ss_pred HHHHhhCCCCCEEEEcCCcc
Q 015441 143 QEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 143 ~~~~~~l~~G~~VIDlSa~f 162 (406)
.+..+.+..+..+||+++.-
T Consensus 224 ~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 224 ADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred HHHHhcCCCCeEEEEeCcCC
Confidence 44555567789999998853
No 100
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.65 E-value=0.021 Score=56.61 Aligned_cols=89 Identities=21% Similarity=0.349 Sum_probs=55.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT- 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~- 141 (406)
.||+|+| .|.+|+.+++.|..+. .++..+ +++.. -....+ + +.....+..+ .+.+.++|+||.|+|...
T Consensus 153 ~kvlViG-~G~iG~~~a~~L~~~G-a~V~v~-~r~~~~~~~~~~----~-G~~~~~~~~l-~~~l~~aDiVI~t~p~~~i 223 (296)
T PRK08306 153 SNVLVLG-FGRTGMTLARTLKALG-ANVTVG-ARKSAHLARITE----M-GLSPFHLSEL-AEEVGKIDIIFNTIPALVL 223 (296)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHCC-CEEEEE-ECCHHHHHHHHH----c-CCeeecHHHH-HHHhCCCCEEEECCChhhh
Confidence 5899999 7999999999998775 466555 33321 111111 0 1000001111 223468999999998763
Q ss_pred hHHHHhhCCCCCEEEEcCCc
Q 015441 142 TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~ 161 (406)
..+..+.+..|..|||+++.
T Consensus 224 ~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 224 TKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred hHHHHHcCCCCcEEEEEccC
Confidence 34455556778999999875
No 101
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.61 E-value=0.014 Score=56.39 Aligned_cols=102 Identities=15% Similarity=0.266 Sum_probs=58.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCC--CceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHP--YFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp--~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
||+||+|+| .|.+|..+++.|.+.. ..++ .+.+++..- +.+...+ + +...... .+...++|+||+|++
T Consensus 1 ~mm~I~iIG-~G~mG~~la~~l~~~g~~~~~v-~v~~r~~~~~~~~~~~~----g--~~~~~~~-~~~~~~advVil~v~ 71 (267)
T PRK11880 1 MMKKIGFIG-GGNMASAIIGGLLASGVPAKDI-IVSDPSPEKRAALAEEY----G--VRAATDN-QEAAQEADVVVLAVK 71 (267)
T ss_pred CCCEEEEEe-chHHHHHHHHHHHhCCCCcceE-EEEcCCHHHHHHHHHhc----C--CeecCCh-HHHHhcCCEEEEEcC
Confidence 578999999 7999999999887532 2333 444443210 1111100 1 1101111 122357899999999
Q ss_pred CcchHHHHhhCC-C-CCEEEEcCCcccCCCccchhhhcC
Q 015441 139 HGTTQEIIKGLP-K-SLKIVDLSADFRLRDVSEYEEWYG 175 (406)
Q Consensus 139 ~~~s~~~~~~l~-~-G~~VIDlSa~fRl~~~~~~~~~y~ 175 (406)
.....++++.+. . +..||.+++... .+..++|++
T Consensus 72 ~~~~~~v~~~l~~~~~~~vvs~~~gi~---~~~l~~~~~ 107 (267)
T PRK11880 72 PQVMEEVLSELKGQLDKLVVSIAAGVT---LARLERLLG 107 (267)
T ss_pred HHHHHHHHHHHHhhcCCEEEEecCCCC---HHHHHHhcC
Confidence 887777776542 1 457787777542 233445543
No 102
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.57 E-value=0.029 Score=55.55 Aligned_cols=91 Identities=16% Similarity=0.234 Sum_probs=52.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.||+|+| +|.+|+.+.+.|..... .++..+ +++.. ...... .. +......... .+...++|+||+|+|....
T Consensus 7 ~~I~IIG-~G~mG~sla~~l~~~g~~~~V~~~-dr~~~--~~~~a~-~~-g~~~~~~~~~-~~~~~~aDvViiavp~~~~ 79 (307)
T PRK07502 7 DRVALIG-IGLIGSSLARAIRRLGLAGEIVGA-DRSAE--TRARAR-EL-GLGDRVTTSA-AEAVKGADLVILCVPVGAS 79 (307)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCCcEEEEE-ECCHH--HHHHHH-hC-CCCceecCCH-HHHhcCCCEEEECCCHHHH
Confidence 5899999 99999999999886543 344433 43321 111100 00 1000001111 1234689999999998766
Q ss_pred HHHHh----hCCCCCEEEEcCCc
Q 015441 143 QEIIK----GLPKSLKIVDLSAD 161 (406)
Q Consensus 143 ~~~~~----~l~~G~~VIDlSa~ 161 (406)
.++.+ .+..+..|+|.++.
T Consensus 80 ~~v~~~l~~~l~~~~iv~dvgs~ 102 (307)
T PRK07502 80 GAVAAEIAPHLKPGAIVTDVGSV 102 (307)
T ss_pred HHHHHHHHhhCCCCCEEEeCccc
Confidence 55443 34567888998763
No 103
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=95.56 E-value=0.016 Score=59.40 Aligned_cols=94 Identities=15% Similarity=0.328 Sum_probs=56.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC-CceEEEEeccCcCC---ccccccccCcc----------------ccCCCccccc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKAG---QSIGSVFPHLI----------------SQDLPTMVAV 122 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~s~~~~G---~~i~~v~p~l~----------------~~~~~~~~~~ 122 (406)
|.||+|+|+||-||+.-++.+.++| .+++++++..+... +...+..|.+. +.........
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence 4689999999999999999999887 68999998544322 11121122211 0000000000
Q ss_pred C--c--ccCCCCCEEEEcCCCcchHH-HHhhCCCCCEEE
Q 015441 123 K--D--ADFSNVDAVFCCLPHGTTQE-IIKGLPKSLKIV 156 (406)
Q Consensus 123 ~--~--~~~~~vDvVF~al~~~~s~~-~~~~l~~G~~VI 156 (406)
+ . ....++|+|+.+.+.....+ ...++++|+.|.
T Consensus 81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~Va 119 (385)
T PRK05447 81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIA 119 (385)
T ss_pred hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEE
Confidence 0 0 01246899999998654444 335568888776
No 104
>PRK08655 prephenate dehydrogenase; Provisional
Probab=95.55 E-value=0.021 Score=59.64 Aligned_cols=88 Identities=18% Similarity=0.345 Sum_probs=53.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
+||+|+|++|.+|+.+.+.|.+.. .++..+. ++. .......- + + ....... .+...++|+||+|+|....
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G-~~V~v~~-r~~~~~~~~a~~---~-g--v~~~~~~-~e~~~~aDvVIlavp~~~~ 71 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG-FEVIVTG-RDPKKGKEVAKE---L-G--VEYANDN-IDAAKDADIVIISVPINVT 71 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC-CEEEEEE-CChHHHHHHHHH---c-C--CeeccCH-HHHhccCCEEEEecCHHHH
Confidence 379999999999999999998643 3554443 321 10111100 0 1 0000011 1224678999999998776
Q ss_pred HHHHhh----CCCCCEEEEcCC
Q 015441 143 QEIIKG----LPKSLKIVDLSA 160 (406)
Q Consensus 143 ~~~~~~----l~~G~~VIDlSa 160 (406)
.+.++. +..++.|+|.++
T Consensus 72 ~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 72 EDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred HHHHHHHHhhCCCCCEEEEccc
Confidence 665543 356889999987
No 105
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=95.53 E-value=0.042 Score=53.73 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=36.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc--CcCCccccc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD--RKAGQSIGS 106 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~--~~~G~~i~~ 106 (406)
|.++|-+.| ||++|.+.+|.|..+|.++++....+ ...|+.+.+
T Consensus 1 m~~~vvqyG-tG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlge 46 (350)
T COG3804 1 MSLRVVQYG-TGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGE 46 (350)
T ss_pred CCceeEEec-cchHHHHHHHHHHcCCCCceEEEEecCcccccccHHH
Confidence 568899999 99999999999999999999987654 345776665
No 106
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.53 E-value=0.017 Score=54.46 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=56.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccccc----CccccCCC-cccccC-cccCCCCCEEEEcC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFP----HLISQDLP-TMVAVK-DADFSNVDAVFCCL 137 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p----~l~~~~~~-~~~~~~-~~~~~~vDvVF~al 137 (406)
+||+|+|++|.+|+.|.+.|.+.- .++... +++.. +...... .+...... .....+ .+...++|+||+|+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~-~r~~~--~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIG-SRDLE--KAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEE-EcCHH--HHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEEC
Confidence 479999999999999999998653 455443 43321 1111000 00000000 011111 22346789999999
Q ss_pred CCcchHHHHhhC---CCCCEEEEcCCcccC
Q 015441 138 PHGTTQEIIKGL---PKSLKIVDLSADFRL 164 (406)
Q Consensus 138 ~~~~s~~~~~~l---~~G~~VIDlSa~fRl 164 (406)
+.....+.++.+ -.+..|||.+..+..
T Consensus 77 p~~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 77 PWDHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred CHHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 988776665443 135789999887654
No 107
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=95.36 E-value=0.025 Score=56.66 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=27.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++.+|+|.|||||||..+++.|+.+- .++++..
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtV 37 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTV 37 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEE
Confidence 45789999999999999999999765 4566665
No 108
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.33 E-value=0.034 Score=48.74 Aligned_cols=92 Identities=13% Similarity=0.177 Sum_probs=51.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCC-cccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLP-TMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~-~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
.+|+|+|+ |.+|+.+++.|..+...++ .+.+++. ..+.+.. .+...... ...+. .+...++|+|+.|+|...
T Consensus 20 ~~i~iiG~-G~~g~~~a~~l~~~g~~~v-~v~~r~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~Dvvi~~~~~~~ 93 (155)
T cd01065 20 KKVLILGA-GGAARAVAYALAELGAAKI-VIVNRTLEKAKALAE---RFGELGIAIAYLDL-EELLAEADLIINTTPVGM 93 (155)
T ss_pred CEEEEECC-cHHHHHHHHHHHHCCCCEE-EEEcCCHHHHHHHHH---HHhhcccceeecch-hhccccCCEEEeCcCCCC
Confidence 58999995 9999999999987642334 4444332 1111111 01100000 01111 122468999999999876
Q ss_pred h----HHHHh-hCCCCCEEEEcCCc
Q 015441 142 T----QEIIK-GLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s----~~~~~-~l~~G~~VIDlSa~ 161 (406)
- ..+.+ .+..|..|+|++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~D~~~~ 118 (155)
T cd01065 94 KPGDELPLPPSLLKPGGVVYDVVYN 118 (155)
T ss_pred CCCCCCCCCHHHcCCCCEEEEcCcC
Confidence 3 11222 24678899999763
No 109
>PLN02206 UDP-glucuronate decarboxylase
Probab=95.28 E-value=0.063 Score=56.14 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=26.8
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.+||.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld 150 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG-DSVIVVD 150 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc-CEEEEEe
Confidence 34689999999999999999998763 4666653
No 110
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.21 E-value=0.033 Score=55.58 Aligned_cols=98 Identities=19% Similarity=0.354 Sum_probs=56.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccccc---CccccCCCc-cccc-Cc-ccCCCCCEEEEc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFP---HLISQDLPT-MVAV-KD-ADFSNVDAVFCC 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p---~l~~~~~~~-~~~~-~~-~~~~~vDvVF~a 136 (406)
++||+|+| .|..|..+...|.... .++..+..+...-+.+..... .+.+..++. +... +. +...++|+||+|
T Consensus 4 ~m~I~iIG-~G~mG~~ia~~L~~~G-~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~ 81 (328)
T PRK14618 4 GMRVAVLG-AGAWGTALAVLAASKG-VPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVA 81 (328)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence 45999999 9999999999998543 355444322111111111100 001111110 1111 11 223579999999
Q ss_pred CCCcchHHHHhhCCCCCEEEEcCCcc
Q 015441 137 LPHGTTQEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 137 l~~~~s~~~~~~l~~G~~VIDlSa~f 162 (406)
++.....+..+.+..+..+||.+.-+
T Consensus 82 v~~~~~~~v~~~l~~~~~vi~~~~Gi 107 (328)
T PRK14618 82 VPSKALRETLAGLPRALGYVSCAKGL 107 (328)
T ss_pred CchHHHHHHHHhcCcCCEEEEEeecc
Confidence 99987777777777778889887643
No 111
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.20 E-value=0.051 Score=54.66 Aligned_cols=93 Identities=15% Similarity=0.338 Sum_probs=52.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcC-------CCceEEEEeccCc-----CCccccccccCccccCCC--cccccCcccC--
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH-------PYFGIKLMTADRK-----AGQSIGSVFPHLISQDLP--TMVAVKDADF-- 127 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h-------p~~elv~l~s~~~-----~G~~i~~v~p~l~~~~~~--~~~~~~~~~~-- 127 (406)
+||+|+| .|-||+.++++|.++ ..++++++++++. .|-.++..........+. .....+.+++
T Consensus 1 mrVaIiG-fG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIG-LGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence 4899999 999999999999864 4678888876442 121111100000000000 0000111111
Q ss_pred CCCCEEEEcCCCcc----hHHHH-hhCCCCCEEEE
Q 015441 128 SNVDAVFCCLPHGT----TQEII-KGLPKSLKIVD 157 (406)
Q Consensus 128 ~~vDvVF~al~~~~----s~~~~-~~l~~G~~VID 157 (406)
.+.|+++.|++... ...+. +++++|+.||-
T Consensus 80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVT 114 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVT 114 (326)
T ss_pred CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEc
Confidence 36899999997432 23333 45689999883
No 112
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=95.16 E-value=0.062 Score=56.07 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=26.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+||.|.||||+||+.|++.|.+.. .+++.+.
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ld 151 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG-DEVIVID 151 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC-CEEEEEe
Confidence 3689999999999999999888653 4777664
No 113
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.05 E-value=0.024 Score=55.51 Aligned_cols=163 Identities=12% Similarity=0.173 Sum_probs=85.6
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCC---CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp---~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
|.+||+++| .|.+|+.+++-|.+.. ..++. +.+++. . +.......+ + .....+. .+...++|+||+|++
T Consensus 1 ~~~~IgfIG-~G~MG~aia~~L~~~g~~~~~~I~-v~~r~~-~-~~~~l~~~~-g--~~~~~~~-~e~~~~aDiIiLavk 72 (272)
T PRK12491 1 MNKQIGFIG-CGNMGIAMIGGMINKNIVSPDQII-CSDLNV-S-NLKNASDKY-G--ITITTNN-NEVANSADILILSIK 72 (272)
T ss_pred CCCeEEEEC-ccHHHHHHHHHHHHCCCCCCceEE-EECCCH-H-HHHHHHHhc-C--cEEeCCc-HHHHhhCCEEEEEeC
Confidence 345899999 9999999999887532 23443 333321 1 111110001 1 1101111 122357899999999
Q ss_pred CcchHHHHhh----CCCCCEEEEcCCcccCCCccchhhhcCCC----CCCccchhhhhccccccchhhccCCc-EEecCC
Q 015441 139 HGTTQEIIKG----LPKSLKIVDLSADFRLRDVSEYEEWYGQP----HIAPDLQKEAVYGLTEISREDIKNAR-LVANPG 209 (406)
Q Consensus 139 ~~~s~~~~~~----l~~G~~VIDlSa~fRl~~~~~~~~~y~~~----~~~Pevn~~~vyglpE~~~~~i~~~~-iVanPg 209 (406)
+....++++. +..+..|||.-+-..++. .++|.+.. .+.|-.....-. +-. +..+++
T Consensus 73 P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~---l~~~l~~~~~vvR~MPN~~~~vg~-----------g~t~~~~~~~ 138 (272)
T PRK12491 73 PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKS---TENEFDRKLKVIRVMPNTPVLVGE-----------GMSALCFNEM 138 (272)
T ss_pred hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHH---HHHhcCCCCcEEEECCChHHHHcC-----------ceEEEEeCCC
Confidence 8777776654 335678999888765544 56676432 233533322211 122 334455
Q ss_pred ChHHHHHHHHHHHHHc-cC-CCcceEEEEEeeccCccCcc
Q 015441 210 CYPTSIQLPLVPLIQA-NL-IQYRNIIIDAKSGVSGAGRG 247 (406)
Q Consensus 210 C~tta~~l~L~PL~~~-~l-~~i~~i~v~t~~gvSGaG~~ 247 (406)
+...-... +.-|++. |. +.++.=.+++.+++||.|-.
T Consensus 139 ~~~~~~~~-v~~lf~~~G~~~~~~E~~~d~~talsgsgPA 177 (272)
T PRK12491 139 VTEKDIKE-VLNIFNIFGQTEVVNEKLMDVVTSISGSSPA 177 (272)
T ss_pred CCHHHHHH-HHHHHHcCCCEEEEcHHHhhhHHHhccCcHH
Confidence 54332222 2233332 11 11222246888999999743
No 114
>PRK10206 putative oxidoreductase; Provisional
Probab=95.05 E-value=0.038 Score=55.79 Aligned_cols=87 Identities=13% Similarity=0.233 Sum_probs=53.9
Q ss_pred ccEEEEECcccHHHH-HHHHHHHc-CCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC--CCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGA-EIVRLLAN-HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~-eLlrlL~~-hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~ 138 (406)
|+||||+| .|.+++ ..++.+.. .+.++++++.++...-......++. ...+.+. ++.+ .++|+|+.|+|
T Consensus 1 ~irvgiiG-~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~-----~~~~~~~-~ell~~~~iD~V~I~tp 73 (344)
T PRK10206 1 VINCAFIG-FGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSH-----IHFTSDL-DEVLNDPDVKLVVVCTH 73 (344)
T ss_pred CeEEEEEC-CCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCC-----CcccCCH-HHHhcCCCCCEEEEeCC
Confidence 58999999 888765 34675644 5789999999864311111111211 1111111 1112 37899999999
Q ss_pred CcchHHHHhh-CCCCCEEE
Q 015441 139 HGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 139 ~~~s~~~~~~-l~~G~~VI 156 (406)
+..=.+++.+ +++|+.|+
T Consensus 74 ~~~H~~~~~~al~aGkhVl 92 (344)
T PRK10206 74 ADSHFEYAKRALEAGKNVL 92 (344)
T ss_pred chHHHHHHHHHHHcCCcEE
Confidence 8877777754 68888766
No 115
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.01 E-value=0.046 Score=53.36 Aligned_cols=162 Identities=13% Similarity=0.178 Sum_probs=84.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC---CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp---~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
+||+++| .|..|+.+++.|.+.. ..++.. .+++. .+........+ + .....+. .+...++|+||+|++..
T Consensus 4 mkI~~IG-~G~mG~aia~~l~~~g~~~~~~v~v-~~r~~-~~~~~~l~~~~-g--~~~~~~~-~e~~~~aDvVilav~p~ 76 (279)
T PRK07679 4 QNISFLG-AGSIAEAIIGGLLHANVVKGEQITV-SNRSN-ETRLQELHQKY-G--VKGTHNK-KELLTDANILFLAMKPK 76 (279)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCCcceEEE-ECCCC-HHHHHHHHHhc-C--ceEeCCH-HHHHhcCCEEEEEeCHH
Confidence 4899999 9999999999888653 234433 33322 11111110000 1 1001111 11235789999999988
Q ss_pred chHHHHhhC----CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCc-EEecCCChHHHH
Q 015441 141 TTQEIIKGL----PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNAR-LVANPGCYPTSI 215 (406)
Q Consensus 141 ~s~~~~~~l----~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~-iVanPgC~tta~ 215 (406)
...+.++.+ ..+..|||+.+-... +..++|.+.. . ..+.++|=.....-.+-. ++.+..|....
T Consensus 77 ~~~~vl~~l~~~~~~~~liIs~~aGi~~---~~l~~~~~~~--~-----~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~- 145 (279)
T PRK07679 77 DVAEALIPFKEYIHNNQLIISLLAGVST---HSIRNLLQKD--V-----PIIRAMPNTSAAILKSATAISPSKHATAEH- 145 (279)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCCCH---HHHHHHcCCC--C-----eEEEECCCHHHHHhcccEEEeeCCCCCHHH-
Confidence 877766443 356789997554433 3344554321 0 112222211111112223 33455554333
Q ss_pred HHHHHHHHHccCCCcceEEE------EEeeccCccCcc
Q 015441 216 QLPLVPLIQANLIQYRNIII------DAKSGVSGAGRG 247 (406)
Q Consensus 216 ~l~L~PL~~~~l~~i~~i~v------~t~~gvSGaG~~ 247 (406)
.-.+.+|++. ++. .++ ++..+.+|+|..
T Consensus 146 ~~~v~~l~~~--~G~--~~~v~e~~~~~~~a~~Gsgpa 179 (279)
T PRK07679 146 IQTAKALFET--IGL--VSVVEEEDMHAVTALSGSGPA 179 (279)
T ss_pred HHHHHHHHHh--CCc--EEEeCHHHhhhHHHhhcCHHH
Confidence 3467788876 552 333 667888888765
No 116
>PRK08374 homoserine dehydrogenase; Provisional
Probab=95.01 E-value=0.039 Score=55.71 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=55.4
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC---------CCceEEEEeccCc-----CCccccccccCcc--c--cCCC---ccc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH---------PYFGIKLMTADRK-----AGQSIGSVFPHLI--S--QDLP---TMV 120 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h---------p~~elv~l~s~~~-----~G~~i~~v~p~l~--~--~~~~---~~~ 120 (406)
|++||+|+| .|-||+.++++|.++ -+++++++++++. .|-.+........ + ..++ ...
T Consensus 1 ~~i~VaIiG-~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~ 79 (336)
T PRK08374 1 MEVKVSIFG-FGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVY 79 (336)
T ss_pred CeeEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhcccccccc
Confidence 568999999 999999999998752 1367888876431 1211111000000 0 0000 000
Q ss_pred ccCccc-C--CCCCEEEEcCCCcchHHHHhh-CCCCCEEE
Q 015441 121 AVKDAD-F--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 121 ~~~~~~-~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VI 156 (406)
..+.++ + .++|+++.|++...+.++... +.+|+.||
T Consensus 80 ~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VV 119 (336)
T PRK08374 80 NFSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVV 119 (336)
T ss_pred CCCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEE
Confidence 111112 2 368999999988777777665 58898887
No 117
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=94.99 E-value=0.046 Score=51.45 Aligned_cols=88 Identities=15% Similarity=0.258 Sum_probs=53.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCc--cc-cccccCccccCCCcccccC-cccCCCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ--SI-GSVFPHLISQDLPTMVAVK-DADFSNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~--~i-~~v~p~l~~~~~~~~~~~~-~~~~~~vDvVF~al~ 138 (406)
|++++|+| ||.+|..|.+.|..-- .|++.- +++...+ .. ....|. +...+ ++....+|+||++.|
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag-~eV~ig-s~r~~~~~~a~a~~l~~~--------i~~~~~~dA~~~aDVVvLAVP 69 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAG-HEVIIG-SSRGPKALAAAAAALGPL--------ITGGSNEDAAALADVVVLAVP 69 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCC-CeEEEe-cCCChhHHHHHHHhhccc--------cccCChHHHHhcCCEEEEecc
Confidence 56788888 9999999999998532 355444 3333211 00 111111 11111 223457999999999
Q ss_pred CcchHHHHhhC---CCCCEEEEcCCc
Q 015441 139 HGTTQEIIKGL---PKSLKIVDLSAD 161 (406)
Q Consensus 139 ~~~s~~~~~~l---~~G~~VIDlSa~ 161 (406)
-..-....+.+ ..|+.|||.+.+
T Consensus 70 ~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 70 FEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred HHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 76666666554 237899998775
No 118
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.96 E-value=0.056 Score=56.07 Aligned_cols=94 Identities=20% Similarity=0.188 Sum_probs=51.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc------CCccccccccCcccc-----CCCcccccCcccCCCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK------AGQSIGSVFPHLISQ-----DLPTMVAVKDADFSNVD 131 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~------~G~~i~~v~p~l~~~-----~~~~~~~~~~~~~~~vD 131 (406)
++||+|+| .||+|..+...|.++. .++..+..... .|. +....|.+... ..-.... ..+..++|
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G-~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~l~~~~~~g~l~~--~~~~~~aD 77 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQ-KQVIGVDINQHAVDTINRGE-IHIVEPDLDMVVKTAVEGGYLRA--TTTPEPAD 77 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCC-CEEEEEeCCHHHHHHHHCCC-CCcCCCCHHHHHHHHhhcCceee--ecccccCC
Confidence 36899999 9999999999998753 46655532111 011 01011111000 0000000 01234799
Q ss_pred EEEEcCCCcc---------h-----HHHHhhCCCCCEEEEcCCc
Q 015441 132 AVFCCLPHGT---------T-----QEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 132 vVF~al~~~~---------s-----~~~~~~l~~G~~VIDlSa~ 161 (406)
++|.|+|... . ..+.+.+..|..||+.|.-
T Consensus 78 vvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv 121 (415)
T PRK11064 78 AFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTS 121 (415)
T ss_pred EEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 9999999752 1 2223345678899988874
No 119
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.95 E-value=0.031 Score=53.06 Aligned_cols=102 Identities=17% Similarity=0.279 Sum_probs=58.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC--CCceEEEEeccCcC--CccccccccCccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKA--GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~~~~--G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
.+||+|+| +|.+|+.+++.|..+ ...+.+.+.+++.. .+.+..-+ ......+. .+.+.++|+||.|+|
T Consensus 4 ~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~DiViiavp 75 (245)
T PRK07634 4 KHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------NVSTTTDW-KQHVTSVDTIVLAMP 75 (245)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------CcEEeCCh-HHHHhcCCEEEEecC
Confidence 36899999 899999999988754 33442233333221 11111101 11111111 122467999999999
Q ss_pred CcchHHHHhhCC---CCCEEEEcCCcccCCCccchhhhcC
Q 015441 139 HGTTQEIIKGLP---KSLKIVDLSADFRLRDVSEYEEWYG 175 (406)
Q Consensus 139 ~~~s~~~~~~l~---~G~~VIDlSa~fRl~~~~~~~~~y~ 175 (406)
...-.++++.+. .+..||+.++-...+ ..++|.+
T Consensus 76 ~~~~~~v~~~l~~~~~~~~vis~~~gi~~~---~l~~~~~ 112 (245)
T PRK07634 76 PSAHEELLAELSPLLSNQLVVTVAAGIGPS---YLEERLP 112 (245)
T ss_pred HHHHHHHHHHHHhhccCCEEEEECCCCCHH---HHHHHcC
Confidence 887777665431 356788888876433 3555543
No 120
>PRK08507 prephenate dehydrogenase; Validated
Probab=94.91 E-value=0.047 Score=53.16 Aligned_cols=88 Identities=18% Similarity=0.357 Sum_probs=51.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
||+|+| .|.+|+.+.+.|.+... .++..+ +++.. ...... .. +. ..... +..+..++|+||+|+|.....
T Consensus 2 ~I~iIG-~G~mG~sla~~l~~~g~~~~v~~~-d~~~~--~~~~~~-~~-g~-~~~~~--~~~~~~~aD~Vilavp~~~~~ 72 (275)
T PRK08507 2 KIGIIG-LGLMGGSLGLALKEKGLISKVYGY-DHNEL--HLKKAL-EL-GL-VDEIV--SFEELKKCDVIFLAIPVDAII 72 (275)
T ss_pred EEEEEc-cCHHHHHHHHHHHhcCCCCEEEEE-cCCHH--HHHHHH-HC-CC-CcccC--CHHHHhcCCEEEEeCcHHHHH
Confidence 799999 89999999999885432 344443 33221 111100 00 00 00011 111233589999999988777
Q ss_pred HHHhh---CCCCCEEEEcCCc
Q 015441 144 EIIKG---LPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~~---l~~G~~VIDlSa~ 161 (406)
+.++. +..+..|+|.++.
T Consensus 73 ~~~~~l~~l~~~~iv~d~gs~ 93 (275)
T PRK08507 73 EILPKLLDIKENTTIIDLGST 93 (275)
T ss_pred HHHHHHhccCCCCEEEECccc
Confidence 76654 3457889998763
No 121
>PRK06813 homoserine dehydrogenase; Validated
Probab=94.91 E-value=0.056 Score=54.81 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=53.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC---------CCceEEEEeccCcC-----CccccccccCccc-cCCCcccccCccc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH---------PYFGIKLMTADRKA-----GQSIGSVFPHLIS-QDLPTMVAVKDAD 126 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h---------p~~elv~l~s~~~~-----G~~i~~v~p~l~~-~~~~~~~~~~~~~ 126 (406)
|+++|+|+| .|-||+.++++|.++ -+++++.+++++.. |-.+......-.. .++..+...+.++
T Consensus 1 ~~i~I~liG-~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (346)
T PRK06813 1 MKIKVVLSG-YGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEE 79 (346)
T ss_pred CeeEEEEEe-cChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHH
Confidence 468999999 999999999999742 24677777654321 2111110000000 0000001111111
Q ss_pred -C---CCCCEEEEcCCCc-----chHHHHh-hCCCCCEEE
Q 015441 127 -F---SNVDAVFCCLPHG-----TTQEIIK-GLPKSLKIV 156 (406)
Q Consensus 127 -~---~~vDvVF~al~~~-----~s~~~~~-~l~~G~~VI 156 (406)
+ .+.|+|+.|+++. .+..+.+ ++++|+.||
T Consensus 80 ~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVV 119 (346)
T PRK06813 80 RATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIV 119 (346)
T ss_pred HhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEE
Confidence 1 2579999998753 4566654 568999999
No 122
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=94.90 E-value=0.11 Score=51.99 Aligned_cols=84 Identities=23% Similarity=0.396 Sum_probs=51.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|+|+| .|.+|+++.+.|..+ .+++.++...+.....+.. .....++ ++.+.++|+|++++|.....
T Consensus 137 ~tvgIvG-~G~IG~~vA~~l~af-G~~V~~~~~~~~~~~~~~~---------~~~~~~l-~e~l~~aDvvv~~lPlt~~T 204 (312)
T PRK15469 137 FTIGILG-AGVLGSKVAQSLQTW-GFPLRCWSRSRKSWPGVQS---------FAGREEL-SAFLSQTRVLINLLPNTPET 204 (312)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCCCCCCCcee---------ecccccH-HHHHhcCCEEEECCCCCHHH
Confidence 5899999 999999999999866 3677666422111000110 0001111 23357899999999966553
Q ss_pred H-H-----HhhCCCCCEEEEcC
Q 015441 144 E-I-----IKGLPKSLKIVDLS 159 (406)
Q Consensus 144 ~-~-----~~~l~~G~~VIDlS 159 (406)
+ + ..+++.|..+|+.+
T Consensus 205 ~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 205 VGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred HHHhHHHHHhcCCCCcEEEECC
Confidence 2 2 23346688889655
No 123
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.85 E-value=0.028 Score=53.38 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=27.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEecc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD 97 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~ 97 (406)
++|.|.||||++|+.+++.|..+ ..++++++.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~ 33 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRN 33 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC-CCEEEEEEeC
Confidence 47999999999999999999987 5677777643
No 124
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=94.84 E-value=0.027 Score=55.30 Aligned_cols=86 Identities=21% Similarity=0.394 Sum_probs=46.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC--CCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~~~~ 141 (406)
|||.|+||+|++|+.|.+.|... ..+++.. ++. .+ ++.....+. ..+ .+.|+|+.|+.-.-
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~-~r~----~~----------dl~d~~~~~-~~~~~~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER-GYEVIAT-SRS----DL----------DLTDPEAVA-KLLEAFKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT-SEEEEEE-STT----CS-----------TTSHHHHH-HHHHHH--SEEEE------
T ss_pred CEEEEECCCCHHHHHHHHHHhhC-CCEEEEe-Cch----hc----------CCCCHHHHH-HHHHHhCCCeEeccceeec
Confidence 68999999999999999999863 4566666 332 11 111111110 011 25699999975311
Q ss_pred ----------h--------HHHHhhC-CCCCEEEEcCCcccCCC
Q 015441 142 ----------T--------QEIIKGL-PKSLKIVDLSADFRLRD 166 (406)
Q Consensus 142 ----------s--------~~~~~~l-~~G~~VIDlSa~fRl~~ 166 (406)
+ ..+++.+ ..|+++|=+|+++=++.
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG 107 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDG 107 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-S
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcC
Confidence 1 1122333 36889999999976654
No 125
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.74 E-value=0.043 Score=53.59 Aligned_cols=31 Identities=26% Similarity=0.596 Sum_probs=25.9
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
+|.|.||+|++|+.|++.|.++. .+++.+..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEEe
Confidence 79999999999999999998765 46666653
No 126
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=94.74 E-value=0.023 Score=46.63 Aligned_cols=84 Identities=21% Similarity=0.346 Sum_probs=51.3
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc--CcCCccccccccCccccCCCcccccC--cccCCCCCEEEEcC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD--RKAGQSIGSVFPHLISQDLPTMVAVK--DADFSNVDAVFCCL 137 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~--~~~G~~i~~v~p~l~~~~~~~~~~~~--~~~~~~vDvVF~al 137 (406)
+..||+|+||++. |+.++..+.....+++..+.+. +..|+.+.. ++.+..++ .+.. ++|+.++|.
T Consensus 2 k~~~v~ivGag~~-G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~g---------ipV~~~~~~l~~~~-~i~iaii~V 70 (96)
T PF02629_consen 2 KKTNVIIVGAGNL-GRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGG---------IPVYGSMDELEEFI-EIDIAIITV 70 (96)
T ss_dssp TTEEEEEETTTSH-HHHHHHHHHHHHCECEEEEEEECTTTTTSEETT---------EEEESSHHHHHHHC-TTSEEEEES
T ss_pred CCCeEEEECCCCc-HHHHHHhHHHHcCCCCEEEEEcCCCccCcEECC---------EEeeccHHHhhhhh-CCCEEEEEc
Confidence 4579999996655 7766654544456788777753 344554441 22221111 1122 489999999
Q ss_pred CCcchHHHHhhC-CCCCEEE
Q 015441 138 PHGTTQEIIKGL-PKSLKIV 156 (406)
Q Consensus 138 ~~~~s~~~~~~l-~~G~~VI 156 (406)
|...+++.+..+ ++|++-|
T Consensus 71 P~~~a~~~~~~~~~~gIk~i 90 (96)
T PF02629_consen 71 PAEAAQEVADELVEAGIKGI 90 (96)
T ss_dssp -HHHHHHHHHHHHHTT-SEE
T ss_pred CHHHHHHHHHHHHHcCCCEE
Confidence 999888887654 7887644
No 127
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=94.73 E-value=0.066 Score=52.28 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=25.7
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEeccCc
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK 99 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~ 99 (406)
|.|.||||++|+.|++.|.++. .+++.+.++..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~~~~ 34 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDNLK 34 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEecCCC
Confidence 7899999999999999998764 45556655433
No 128
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=94.63 E-value=0.058 Score=47.07 Aligned_cols=34 Identities=26% Similarity=0.633 Sum_probs=30.4
Q ss_pred EEEECcccHHHHHHHHHHHcCC-CceEEEEeccCc
Q 015441 66 IGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRK 99 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp-~~elv~l~s~~~ 99 (406)
|+|+|+||-||++.++.+.+|| .+++++++..++
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n 35 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSN 35 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESST
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCC
Confidence 6899999999999999999998 689999987544
No 129
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=94.60 E-value=0.052 Score=53.56 Aligned_cols=89 Identities=16% Similarity=0.357 Sum_probs=52.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.||+|+| .|.+|..+.+.|.++. .++... +++.. +... +........... .+...++|+||+|+|....
T Consensus 2 ~~Ig~IG-lG~mG~~mA~~l~~~G-~~V~v~-d~~~~--~~~~----~~~~g~~~~~s~-~~~~~~aDvVi~~vp~~~~~ 71 (296)
T PRK15461 2 AAIAFIG-LGQMGSPMASNLLKQG-HQLQVF-DVNPQ--AVDA----LVDKGATPAASP-AQAAAGAEFVITMLPNGDLV 71 (296)
T ss_pred CeEEEEe-eCHHHHHHHHHHHHCC-CeEEEE-cCCHH--HHHH----HHHcCCcccCCH-HHHHhcCCEEEEecCCHHHH
Confidence 4899999 9999999999998664 355433 43221 1111 000001001111 1223678999999998753
Q ss_pred HHHH-------hhCCCCCEEEEcCCcc
Q 015441 143 QEII-------KGLPKSLKIVDLSADF 162 (406)
Q Consensus 143 ~~~~-------~~l~~G~~VIDlSa~f 162 (406)
.+.. +.+..|..+||.|.-.
T Consensus 72 ~~vl~~~~~i~~~l~~g~lvid~sT~~ 98 (296)
T PRK15461 72 RSVLFGENGVCEGLSRDALVIDMSTIH 98 (296)
T ss_pred HHHHcCcccHhhcCCCCCEEEECCCCC
Confidence 3332 1234678899998754
No 130
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=94.56 E-value=0.075 Score=53.42 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=43.4
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCc------eEEEEeccC----cCCccccccccCcc-ccCCCcccccCcccCCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYF------GIKLMTADR----KAGQSIGSVFPHLI-SQDLPTMVAVKDADFSNV 130 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~------elv~l~s~~----~~G~~i~~v~p~l~-~~~~~~~~~~~~~~~~~v 130 (406)
+..||+|+||+|.||..++-.|...+-+ |++.+--.. ..|..++-.|-... ..... +..-+.+++.++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~-i~~~~~~~~~da 80 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVV-ATTDPEEAFKDV 80 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcE-EecChHHHhCCC
Confidence 3579999999999999999988754433 676663211 23433332221100 00111 111123456788
Q ss_pred CEEEEcCCC
Q 015441 131 DAVFCCLPH 139 (406)
Q Consensus 131 DvVF~al~~ 139 (406)
|+|+.+.+.
T Consensus 81 DvVVitAG~ 89 (323)
T TIGR01759 81 DAALLVGAF 89 (323)
T ss_pred CEEEEeCCC
Confidence 888887764
No 131
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=94.54 E-value=0.08 Score=52.30 Aligned_cols=90 Identities=21% Similarity=0.351 Sum_probs=53.1
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
||+|+| .|..|..+.+.|.++ ..++... +++.. -+.+.. ..........++ .+...++|+||+|+|.....
T Consensus 2 ~Ig~IG-lG~mG~~la~~L~~~-g~~V~~~-dr~~~~~~~l~~----~g~~~~~s~~~~-~~~~~~~dvIi~~vp~~~~~ 73 (298)
T TIGR00872 2 QLGLIG-LGRMGANIVRRLAKR-GHDCVGY-DHDQDAVKAMKE----DRTTGVANLREL-SQRLSAPRVVWVMVPHGIVD 73 (298)
T ss_pred EEEEEc-chHHHHHHHHHHHHC-CCEEEEE-ECCHHHHHHHHH----cCCcccCCHHHH-HhhcCCCCEEEEEcCchHHH
Confidence 799999 899999999998865 3566544 33221 111111 000000001111 11234689999999998555
Q ss_pred HHHh----hCCCCCEEEEcCCcc
Q 015441 144 EIIK----GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~----~l~~G~~VIDlSa~f 162 (406)
+.+. .+..|..|||.|...
T Consensus 74 ~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 74 AVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred HHHHHHHhhCCCCCEEEECCCCC
Confidence 5443 346788999998764
No 132
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.53 E-value=0.04 Score=53.10 Aligned_cols=101 Identities=19% Similarity=0.352 Sum_probs=58.3
Q ss_pred EEEEECcccHHHHHHHHHHHcCC-CceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 65 RIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp-~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
||+|+| +|.+|+.+++.|.+.. ..+.+.+.+++.. -+.+...++ + .....+. .+...++|+||+|++....
T Consensus 2 ~IgiIG-~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~---~--~~~~~~~-~~~~~~aDvVilav~p~~~ 74 (258)
T PRK06476 2 KIGFIG-TGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP---K--VRIAKDN-QAVVDRSDVVFLAVRPQIA 74 (258)
T ss_pred eEEEEC-cCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC---C--ceEeCCH-HHHHHhCCEEEEEeCHHHH
Confidence 799999 9999999999887542 2233344443221 011111110 0 1001111 1123578999999998766
Q ss_pred HHHHhhC--CCCCEEEEcCCcccCCCccchhhhcC
Q 015441 143 QEIIKGL--PKSLKIVDLSADFRLRDVSEYEEWYG 175 (406)
Q Consensus 143 ~~~~~~l--~~G~~VIDlSa~fRl~~~~~~~~~y~ 175 (406)
.++++.+ ..|..||+.++.... +.+++|.+
T Consensus 75 ~~vl~~l~~~~~~~vis~~ag~~~---~~l~~~~~ 106 (258)
T PRK06476 75 EEVLRALRFRPGQTVISVIAATDR---AALLEWIG 106 (258)
T ss_pred HHHHHHhccCCCCEEEEECCCCCH---HHHHHHhC
Confidence 6766554 457788988877543 34555543
No 133
>PRK05442 malate dehydrogenase; Provisional
Probab=94.49 E-value=0.075 Score=53.48 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=44.5
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCC------CceEEEEeccC----cCCccccccccCcc-ccCCCcccccCcccCCC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHP------YFGIKLMTADR----KAGQSIGSVFPHLI-SQDLPTMVAVKDADFSN 129 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp------~~elv~l~s~~----~~G~~i~~v~p~l~-~~~~~~~~~~~~~~~~~ 129 (406)
.++.||+|+||+|.||..++-.|.... ..|++.+--.. ..|..++-.|.... .... .+..-+.+++.+
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~-~i~~~~y~~~~d 80 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGV-VITDDPNVAFKD 80 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCc-EEecChHHHhCC
Confidence 345799999999999999988776422 23676664321 23443332221100 0011 111112345689
Q ss_pred CCEEEEcCCC
Q 015441 130 VDAVFCCLPH 139 (406)
Q Consensus 130 vDvVF~al~~ 139 (406)
+|+|+.+.+.
T Consensus 81 aDiVVitaG~ 90 (326)
T PRK05442 81 ADVALLVGAR 90 (326)
T ss_pred CCEEEEeCCC
Confidence 9999888773
No 134
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.47 E-value=0.11 Score=52.16 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=43.6
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCcCCccccccccCccccCCCccccc-C----cccCCCCCEEE
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVFPHLISQDLPTMVAV-K----DADFSNVDAVF 134 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~-~----~~~~~~vDvVF 134 (406)
.+|.||+|+||.|.||..+...|...... |++.+--....|+..+-.|-. . .. .+... + .+++.++|+|+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~--~-~~-~v~~~td~~~~~~~l~gaDvVV 81 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHID--T-PA-KVTGYADGELWEKALRGADLVL 81 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcC--c-Cc-eEEEecCCCchHHHhCCCCEEE
Confidence 45679999999999999999988865544 555553222223222211100 0 11 11111 1 23567899999
Q ss_pred EcCCC
Q 015441 135 CCLPH 139 (406)
Q Consensus 135 ~al~~ 139 (406)
.+++.
T Consensus 82 itaG~ 86 (321)
T PTZ00325 82 ICAGV 86 (321)
T ss_pred ECCCC
Confidence 98875
No 135
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.47 E-value=0.083 Score=53.03 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=43.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC------CceEEEEeccC----cCCccccccccCccc-cCCCcccccCcccCCCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP------YFGIKLMTADR----KAGQSIGSVFPHLIS-QDLPTMVAVKDADFSNVD 131 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp------~~elv~l~s~~----~~G~~i~~v~p~l~~-~~~~~~~~~~~~~~~~vD 131 (406)
..||+|+||+|.||..++-.|.... ..|++.+--.. ..|..++-.|....- .... +..-+.+++.++|
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~-i~~~~~~~~~daD 80 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIV-ITDDPNVAFKDAD 80 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceE-EecCcHHHhCCCC
Confidence 4699999999999999999887432 33676664321 234433322211000 0111 1111234567889
Q ss_pred EEEEcCCC
Q 015441 132 AVFCCLPH 139 (406)
Q Consensus 132 vVF~al~~ 139 (406)
+|+.+.+.
T Consensus 81 ivvitaG~ 88 (322)
T cd01338 81 WALLVGAK 88 (322)
T ss_pred EEEEeCCC
Confidence 88888775
No 136
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.42 E-value=0.084 Score=53.01 Aligned_cols=26 Identities=27% Similarity=0.499 Sum_probs=21.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF 89 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~ 89 (406)
.||+|+||+|.||..++..|...+.+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~ 26 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELF 26 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCcc
Confidence 48999999999999999988864433
No 137
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.40 E-value=0.027 Score=49.12 Aligned_cols=92 Identities=17% Similarity=0.314 Sum_probs=49.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCC--cccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLP--TMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~--~~~~~~~~~~~~vDvVF~al~~ 139 (406)
..+|.|+| +|-+|+.++..|..+..-++..++ |.. ..+.+.+.+ .+..+. .+.++ ...+.++|+||.|++.
T Consensus 12 ~~~vlviG-aGg~ar~v~~~L~~~g~~~i~i~n-Rt~~ra~~l~~~~---~~~~~~~~~~~~~-~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 12 GKRVLVIG-AGGAARAVAAALAALGAKEITIVN-RTPERAEALAEEF---GGVNIEAIPLEDL-EEALQEADIVINATPS 85 (135)
T ss_dssp TSEEEEES-SSHHHHHHHHHHHHTTSSEEEEEE-SSHHHHHHHHHHH---TGCSEEEEEGGGH-CHHHHTESEEEE-SST
T ss_pred CCEEEEEC-CHHHHHHHHHHHHHcCCCEEEEEE-CCHHHHHHHHHHc---CccccceeeHHHH-HHHHhhCCeEEEecCC
Confidence 35899999 588899999999877444455544 432 112222211 111111 11111 1123578999999998
Q ss_pred cch---HHHHhhCCCC-CEEEEcCC
Q 015441 140 GTT---QEIIKGLPKS-LKIVDLSA 160 (406)
Q Consensus 140 ~~s---~~~~~~l~~G-~~VIDlSa 160 (406)
+.. .+..+..... ..|+|++-
T Consensus 86 ~~~~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 86 GMPIITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp TSTSSTHHHHTTTCHHCSEEEES-S
T ss_pred CCcccCHHHHHHHHhhhhceecccc
Confidence 755 2232222111 38999974
No 138
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.29 E-value=0.13 Score=51.25 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=54.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC------CccccccccCcccc-CCCccc-ccCcccCCCCCEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA------GQSIGSVFPHLISQ-DLPTMV-AVKDADFSNVDAV 133 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~------G~~i~~v~p~l~~~-~~~~~~-~~~~~~~~~vDvV 133 (406)
||+||+|+| +|.+|..+...|...- .++..+..+... |..+.... ..... ....+. ..+.+...++|+|
T Consensus 1 ~~mkI~IiG-~G~mG~~~A~~L~~~G-~~V~~~~r~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~v 77 (341)
T PRK08229 1 MMARICVLG-AGSIGCYLGGRLAAAG-ADVTLIGRARIGDELRAHGLTLTDYR-GRDVRVPPSAIAFSTDPAALATADLV 77 (341)
T ss_pred CCceEEEEC-CCHHHHHHHHHHHhcC-CcEEEEecHHHHHHHHhcCceeecCC-CcceecccceeEeccChhhccCCCEE
Confidence 678999999 9999999999998653 355555422111 11111000 00000 000000 1112234679999
Q ss_pred EEcCCCcchHHHHhhC----CCCCEEEEcCCc
Q 015441 134 FCCLPHGTTQEIIKGL----PKSLKIVDLSAD 161 (406)
Q Consensus 134 F~al~~~~s~~~~~~l----~~G~~VIDlSa~ 161 (406)
|+|++.....+.++.+ ..+..||++..-
T Consensus 78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG 109 (341)
T PRK08229 78 LVTVKSAATADAAAALAGHARPGAVVVSFQNG 109 (341)
T ss_pred EEEecCcchHHHHHHHHhhCCCCCEEEEeCCC
Confidence 9999987766655433 456788887543
No 139
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.27 E-value=0.1 Score=51.73 Aligned_cols=74 Identities=16% Similarity=0.327 Sum_probs=49.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
+||+|+| +|.+|+.+.+.|.... .++... +++.. .+ . .+...++|+||+|+|.....
T Consensus 5 m~I~iiG-~G~~G~~lA~~l~~~G-~~V~~~-~r~~~-------------~~---~----~~~~~~advvi~~vp~~~~~ 61 (308)
T PRK14619 5 KTIAILG-AGAWGSTLAGLASANG-HRVRVW-SRRSG-------------LS---L----AAVLADADVIVSAVSMKGVR 61 (308)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCC-CEEEEE-eCCCC-------------CC---H----HHHHhcCCEEEEECChHHHH
Confidence 5899999 9999999999998653 355433 33221 01 1 11235789999999987666
Q ss_pred HHHhhC-----CCCCEEEEcCC
Q 015441 144 EIIKGL-----PKSLKIVDLSA 160 (406)
Q Consensus 144 ~~~~~l-----~~G~~VIDlSa 160 (406)
++++.+ ..+..|||.+.
T Consensus 62 ~v~~~l~~~~~~~~~ivi~~s~ 83 (308)
T PRK14619 62 PVAEQVQALNLPPETIIVTATK 83 (308)
T ss_pred HHHHHHHHhcCCCCcEEEEeCC
Confidence 655433 34678898775
No 140
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=94.21 E-value=0.058 Score=59.14 Aligned_cols=35 Identities=17% Similarity=0.450 Sum_probs=29.5
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+++||.|.||||++|+.|++.|.++...+++.+.
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~ 347 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLD 347 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEe
Confidence 34578999999999999999999876557888875
No 141
>PRK05086 malate dehydrogenase; Provisional
Probab=94.18 E-value=0.12 Score=51.61 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=40.8
Q ss_pred cEEEEECcccHHHHHHHHHHHc-CCCc-eEEEEeccCcC--CccccccccCccccCCCcccc--c-C-cccCCCCCEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLAN-HPYF-GIKLMTADRKA--GQSIGSVFPHLISQDLPTMVA--V-K-DADFSNVDAVFC 135 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~-hp~~-elv~l~s~~~~--G~~i~~v~p~l~~~~~~~~~~--~-~-~~~~~~vDvVF~ 135 (406)
+||+|+||||.+|..++..|.. .+.. +++++ ++... |..++..+. .... .+.. . + .+++.++|+||.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~-d~~~~~~g~alDl~~~---~~~~-~i~~~~~~d~~~~l~~~DiVIi 75 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLY-DIAPVTPGVAVDLSHI---PTAV-KIKGFSGEDPTPALEGADVVLI 75 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEE-ecCCCCcceehhhhcC---CCCc-eEEEeCCCCHHHHcCCCCEEEE
Confidence 5899999999999999998854 4544 44444 33221 222222120 0000 1111 1 1 235578999999
Q ss_pred cCCC
Q 015441 136 CLPH 139 (406)
Q Consensus 136 al~~ 139 (406)
|++.
T Consensus 76 taG~ 79 (312)
T PRK05086 76 SAGV 79 (312)
T ss_pred cCCC
Confidence 9885
No 142
>PLN02712 arogenate dehydrogenase
Probab=94.17 E-value=0.068 Score=58.82 Aligned_cols=89 Identities=15% Similarity=0.272 Sum_probs=54.2
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC-CCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~al~~~ 140 (406)
+++||+||| .|.+|+.+.+.|.+.. .+++.+ ++......... + + ....... .+.. ..+|+||+|+|..
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~~G-~~V~~~-dr~~~~~~a~~----~-G--v~~~~~~-~el~~~~aDvVILavP~~ 436 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVKQG-HTVLAY-SRSDYSDEAQK----L-G--VSYFSDA-DDLCEEHPEVILLCTSIL 436 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHHCc-CEEEEE-ECChHHHHHHH----c-C--CeEeCCH-HHHHhcCCCEEEECCChH
Confidence 457999999 9999999999998653 466644 33221011000 1 1 1001111 1112 2489999999987
Q ss_pred chHHHHhh-----CCCCCEEEEcCCc
Q 015441 141 TTQEIIKG-----LPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~~~-----l~~G~~VIDlSa~ 161 (406)
...+++.. +..|+.|+|.++.
T Consensus 437 ~~~~vi~~l~~~~lk~g~ivvDv~Sv 462 (667)
T PLN02712 437 STEKVLKSLPFQRLKRSTLFVDVLSV 462 (667)
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCCc
Confidence 77665543 2458899999775
No 143
>PLN02712 arogenate dehydrogenase
Probab=94.16 E-value=0.11 Score=57.22 Aligned_cols=88 Identities=17% Similarity=0.302 Sum_probs=53.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCccc-C-CCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDAD-F-SNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~-~-~~vDvVF~al~~ 139 (406)
.++||+||| .|.+|+.+.+.|..+. .++..+. ++.. ..... .+ + ..... +.++ . .++|+||+|+|.
T Consensus 51 ~~~kIgIIG-~G~mG~slA~~L~~~G-~~V~~~d-r~~~-~~~A~---~~-G--v~~~~--d~~e~~~~~aDvViLavP~ 118 (667)
T PLN02712 51 TQLKIAIIG-FGNYGQFLAKTLISQG-HTVLAHS-RSDH-SLAAR---SL-G--VSFFL--DPHDLCERHPDVILLCTSI 118 (667)
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCC-CEEEEEe-CCHH-HHHHH---Hc-C--CEEeC--CHHHHhhcCCCEEEEcCCH
Confidence 346899999 8999999999998763 5665543 3211 11000 01 1 10011 1112 2 358999999998
Q ss_pred cchHHHHhhC-----CCCCEEEEcCCc
Q 015441 140 GTTQEIIKGL-----PKSLKIVDLSAD 161 (406)
Q Consensus 140 ~~s~~~~~~l-----~~G~~VIDlSa~ 161 (406)
....++++.+ ..|+.|+|.++.
T Consensus 119 ~~~~~vl~~l~~~~l~~g~iVvDv~Sv 145 (667)
T PLN02712 119 ISTENVLKSLPLQRLKRNTLFVDVLSV 145 (667)
T ss_pred HHHHHHHHhhhhhcCCCCeEEEECCCC
Confidence 7666665432 357899998753
No 144
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=94.15 E-value=0.064 Score=53.55 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=27.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|+||.|.||||++|+.|++.|.+....+++++.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 458999999999999999999865456787775
No 145
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.13 E-value=0.11 Score=53.55 Aligned_cols=95 Identities=22% Similarity=0.349 Sum_probs=50.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccc-----cccCccc---c--CCCcccc-cCc-ccCCCCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS-----VFPHLIS---Q--DLPTMVA-VKD-ADFSNVD 131 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~-----v~p~l~~---~--~~~~~~~-~~~-~~~~~vD 131 (406)
+||+|+| .|++|..+...|.+.. .++..+..+...-..+.. ..|.+.. . ....+.. .+. +...++|
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G-~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLG-HEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcC-CeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 3799999 9999999999998643 355555322111011110 0111110 0 0000111 111 1246899
Q ss_pred EEEEcCCCcch----------HH----HHhhCCCCCEEEEcCC
Q 015441 132 AVFCCLPHGTT----------QE----IIKGLPKSLKIVDLSA 160 (406)
Q Consensus 132 vVF~al~~~~s----------~~----~~~~l~~G~~VIDlSa 160 (406)
+||.|+|.... .. +.+.+..|..|||.|.
T Consensus 79 vvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~ST 121 (411)
T TIGR03026 79 VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLEST 121 (411)
T ss_pred EEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 99999997642 11 2233456888998885
No 146
>PRK08618 ornithine cyclodeaminase; Validated
Probab=94.12 E-value=0.077 Score=53.16 Aligned_cols=95 Identities=9% Similarity=0.089 Sum_probs=55.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-cccccccc-CccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFP-HLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p-~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
..+++|+| +|..|+..++.+.....++.+.+.++.... ..+..... .+ +.+...+.+. ++...++|+|+.|||..
T Consensus 127 ~~~v~iiG-aG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~-~~~~~~~~~~-~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 127 AKTLCLIG-TGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF-NTEIYVVNSA-DEAIEEADIIVTVTNAK 203 (325)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc-CCcEEEeCCH-HHHHhcCCEEEEccCCC
Confidence 35799999 999999998887655556777777654211 11111000 00 1011111111 22346899999999987
Q ss_pred chHHHHhhCCCCCEEEEcCCc
Q 015441 141 TTQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~~~l~~G~~VIDlSa~ 161 (406)
... +...++.|+.|+-..++
T Consensus 204 ~p~-i~~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 TPV-FSEKLKKGVHINAVGSF 223 (325)
T ss_pred Ccc-hHHhcCCCcEEEecCCC
Confidence 432 22456789998866654
No 147
>PRK07574 formate dehydrogenase; Provisional
Probab=94.12 E-value=0.13 Score=52.97 Aligned_cols=86 Identities=17% Similarity=0.319 Sum_probs=51.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|+|+| .|.+|+.+++.|..+ .+++.+.. +......... .+ .......+ ++.+..+|+|++++|.....
T Consensus 193 ktVGIvG-~G~IG~~vA~~l~~f-G~~V~~~d-r~~~~~~~~~---~~---g~~~~~~l-~ell~~aDvV~l~lPlt~~T 262 (385)
T PRK07574 193 MTVGIVG-AGRIGLAVLRRLKPF-DVKLHYTD-RHRLPEEVEQ---EL---GLTYHVSF-DSLVSVCDVVTIHCPLHPET 262 (385)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEC-CCCCchhhHh---hc---CceecCCH-HHHhhcCCEEEEcCCCCHHH
Confidence 4799999 999999999999865 45666553 2211111110 00 01001112 23357899999999955432
Q ss_pred ------HHHhhCCCCCEEEEcC
Q 015441 144 ------EIIKGLPKSLKIVDLS 159 (406)
Q Consensus 144 ------~~~~~l~~G~~VIDlS 159 (406)
+....++.|..+|+.+
T Consensus 263 ~~li~~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 263 EHLFDADVLSRMKRGSYLVNTA 284 (385)
T ss_pred HHHhCHHHHhcCCCCcEEEECC
Confidence 2333456788999655
No 148
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.11 E-value=0.16 Score=52.53 Aligned_cols=37 Identities=27% Similarity=0.545 Sum_probs=29.4
Q ss_pred ccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 59 ~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
.+.++..|.|+||||.+|+.+.+.|.+.. +.+.++.-
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrg-f~vra~VR 111 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRG-FSVRALVR 111 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCC-Ceeeeecc
Confidence 33445789999999999999999998765 66666664
No 149
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.11 E-value=0.073 Score=50.63 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=26.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+++|.|+||||++|+.|++.|.+.. .+++++.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~ 48 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKG-FAVKAGV 48 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC-CEEEEEe
Confidence 4689999999999999999998753 5676664
No 150
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.08 E-value=0.14 Score=46.62 Aligned_cols=73 Identities=15% Similarity=0.279 Sum_probs=49.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.||.|+|+.+++|..+++.|.++.. ++. +..++. . ++ .+.+.++|+||.|++...
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~-~V~-v~~r~~-----~---------~l-------~~~l~~aDiVIsat~~~~-- 99 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNA-TVT-VCHSKT-----K---------NL-------KEHTKQADIVIVAVGKPG-- 99 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCC-EEE-EEECCc-----h---------hH-------HHHHhhCCEEEEcCCCCc--
Confidence 5899999766789999999987643 543 433321 0 11 123467999999998643
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
+.. .++.+..|||++-+.
T Consensus 100 -ii~~~~~~~~~viIDla~pr 119 (168)
T cd01080 100 -LVKGDMVKPGAVVIDVGINR 119 (168)
T ss_pred -eecHHHccCCeEEEEccCCC
Confidence 221 356688999999874
No 151
>PRK12320 hypothetical protein; Provisional
Probab=94.08 E-value=0.12 Score=56.93 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=50.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC--CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA--GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~--G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
|||.|.||+|++|+.|++.|.+.. .+++.+...... ...+..+ . .++... .+ ...+.++|+||.+.+...
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr~~~~~~~~~ve~v----~-~Dl~d~-~l-~~al~~~D~VIHLAa~~~ 72 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG-HTVSGIAQHPHDALDPRVDYV----C-ASLRNP-VL-QELAGEADAVIHLAPVDT 72 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCChhhcccCCceEE----E-ccCCCH-HH-HHHhcCCCEEEEcCccCc
Confidence 389999999999999999888653 467666532111 0011111 1 121111 01 122357899999987432
Q ss_pred ----------hHHHHhhC-CCCCEEEEcCCc
Q 015441 142 ----------TQEIIKGL-PKSLKIVDLSAD 161 (406)
Q Consensus 142 ----------s~~~~~~l-~~G~~VIDlSa~ 161 (406)
+..++.++ +.|+++|-+|+.
T Consensus 73 ~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~ 103 (699)
T PRK12320 73 SAPGGVGITGLAHVANAAARAGARLLFVSQA 103 (699)
T ss_pred cchhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 12233333 457777767765
No 152
>PRK06046 alanine dehydrogenase; Validated
Probab=94.07 E-value=0.066 Score=53.73 Aligned_cols=96 Identities=11% Similarity=0.154 Sum_probs=56.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
..+|+|+| +|..|+..++.|...+.++.+.+.++.... +.+...+....+..+...... ++... +|+|+.|||+..
T Consensus 129 ~~~vgiiG-~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~-aDiVv~aTps~~ 205 (326)
T PRK06046 129 SKVVGIIG-AGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDI-EEACD-CDILVTTTPSRK 205 (326)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCH-HHHhh-CCEEEEecCCCC
Confidence 46899999 999999999999877888988888765321 111110000001011111111 11233 899999999753
Q ss_pred hHHHHhhCCCCCEEEEcCCc
Q 015441 142 TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~ 161 (406)
--=....++.|+.|.-.+++
T Consensus 206 P~~~~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 206 PVVKAEWIKEGTHINAIGAD 225 (326)
T ss_pred cEecHHHcCCCCEEEecCCC
Confidence 21111235678887766653
No 153
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.06 E-value=0.11 Score=52.89 Aligned_cols=91 Identities=12% Similarity=0.206 Sum_probs=50.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchHH
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQE 144 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~~ 144 (406)
+|+|+| +|.+|+.+.+.|...- .++..+..+... ....... .+...+. ....+ .+...++|+||+|+|.....+
T Consensus 2 ~I~iIG-~GliG~siA~~L~~~G-~~v~i~~~~~~~-~~~~~a~-~~~~~~~-~~~~~-~~~~~~aDlVilavP~~~~~~ 75 (359)
T PRK06545 2 TVLIVG-LGLIGGSLALAIKAAG-PDVFIIGYDPSA-AQLARAL-GFGVIDE-LAADL-QRAAAEADLIVLAVPVDATAA 75 (359)
T ss_pred eEEEEE-eCHHHHHHHHHHHhcC-CCeEEEEeCCCH-HHHHHHh-cCCCCcc-cccCH-HHHhcCCCEEEEeCCHHHHHH
Confidence 699999 9999999999998542 133222221111 1111000 0000000 00111 122468999999999887766
Q ss_pred HHhhC-----CCCCEEEEcCCc
Q 015441 145 IIKGL-----PKSLKIVDLSAD 161 (406)
Q Consensus 145 ~~~~l-----~~G~~VIDlSa~ 161 (406)
+++.+ ..++.|.|.++-
T Consensus 76 vl~~l~~~~l~~~~ivtDv~Sv 97 (359)
T PRK06545 76 LLAELADLELKPGVIVTDVGSV 97 (359)
T ss_pred HHHHHhhcCCCCCcEEEeCccc
Confidence 65433 347888898774
No 154
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.01 E-value=0.077 Score=51.97 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=25.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||||++|+.|++.|.++. .+++.+.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG-YTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC-CEEEEEE
Confidence 479999999999999999998764 4666554
No 155
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.90 E-value=0.14 Score=51.12 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=44.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCcCCccccccccCccccCCCcccc--cC---cccCCCCCEEEEcC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVFPHLISQDLPTMVA--VK---DADFSNVDAVFCCL 137 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~--~~---~~~~~~vDvVF~al 137 (406)
+||+|+||+|.||..++-.|...+.. |++.+--....|..++-.|... . ..+.. -+ .+++.++|+|+.+.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~---~-~~i~~~~~~~~~y~~~~daDivvita 76 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINT---P-AKVTGYLGPEELKKALKGADVVVIPA 76 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCC---c-ceEEEecCCCchHHhcCCCCEEEEeC
Confidence 48999999999999999988865543 5665532233344433222110 0 01211 11 24578999999988
Q ss_pred CC
Q 015441 138 PH 139 (406)
Q Consensus 138 ~~ 139 (406)
+.
T Consensus 77 G~ 78 (310)
T cd01337 77 GV 78 (310)
T ss_pred CC
Confidence 75
No 156
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=93.90 E-value=0.11 Score=54.18 Aligned_cols=95 Identities=13% Similarity=0.178 Sum_probs=53.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc------CCccccccccCcccc-CCCccc-ccCcccCCCCCEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK------AGQSIGSVFPHLISQ-DLPTMV-AVKDADFSNVDAVFC 135 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~------~G~~i~~v~p~l~~~-~~~~~~-~~~~~~~~~vDvVF~ 135 (406)
+||+|+| .||+|.-+...|... ++++.+.-... .|... ...|.+... ....+. ..+.+...++|++|.
T Consensus 7 mkI~vIG-lGyvGlpmA~~la~~--~~V~g~D~~~~~ve~l~~G~~~-~~e~~~~~l~~~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 7 VKIAIIG-LGYVGLPLAVEFGKS--RQVVGFDVNKKRILELKNGVDV-NLETTEEELREARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred CeEEEEC-cCcchHHHHHHHhcC--CEEEEEeCCHHHHHHHHCcCCC-CCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence 6899999 999999999998763 67766643221 12110 001111000 000000 111223468999999
Q ss_pred cCCCcchH--------------HHHhhCCCCCEEEEcCCcc
Q 015441 136 CLPHGTTQ--------------EIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 136 al~~~~s~--------------~~~~~l~~G~~VIDlSa~f 162 (406)
|.|+.... .+.+.+..|..|||-|.-.
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~ 123 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY 123 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 99966311 1223345688999887753
No 157
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=93.78 E-value=0.14 Score=52.44 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=27.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++++|.|.||||++|+.+++.|.++. .+++.+.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~ 91 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRG-YNVVAVA 91 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 34689999999999999999998653 5777665
No 158
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=93.75 E-value=0.18 Score=50.39 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=42.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEecc--CcCCccccccccCcc-ccCCCcccccCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTAD--RKAGQSIGSVFPHLI-SQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~--~~~G~~i~~v~p~l~-~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
+||+|+|| |.||+.++-+|....-. |++.+--. ...|..++-.|.... ..+......-+-.++.++|+|+.+.+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAG 78 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCC
Confidence 48999998 99999999999876666 77665322 223433332221110 11111111111245678999988874
No 159
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=93.70 E-value=0.1 Score=51.39 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=26.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
.+|.|.||||++|+.+++.|.++. .+++.+..
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r 37 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG-YTVKATVR 37 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence 479999999999999999998764 46665553
No 160
>PLN00198 anthocyanidin reductase; Provisional
Probab=93.67 E-value=0.095 Score=52.03 Aligned_cols=33 Identities=12% Similarity=0.413 Sum_probs=26.6
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++.+|.|.||+|++|+.|++.|.+.. .+++.+.
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~ 40 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKG-YAVNTTV 40 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 34689999999999999999998754 4665554
No 161
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.62 E-value=0.13 Score=49.69 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=26.0
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
+|.|.||||++|+.|++.|.+. ..+++.+..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeC
Confidence 4999999999999999999875 457777754
No 162
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=93.60 E-value=0.11 Score=51.71 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=51.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
..+|+|+| +|.+|+.+++.|..+...++ .+.++... ...+...+ .. ......++ .+.+.++|+||.|++...
T Consensus 178 ~~~V~ViG-aG~iG~~~a~~L~~~g~~~V-~v~~r~~~ra~~la~~~---g~-~~~~~~~~-~~~l~~aDvVi~at~~~~ 250 (311)
T cd05213 178 GKKVLVIG-AGEMGELAAKHLAAKGVAEI-TIANRTYERAEELAKEL---GG-NAVPLDEL-LELLNEADVVISATGAPH 250 (311)
T ss_pred CCEEEEEC-cHHHHHHHHHHHHHcCCCEE-EEEeCCHHHHHHHHHHc---CC-eEEeHHHH-HHHHhcCCEEEECCCCCc
Confidence 36899999 59999999999886433344 44444321 11111111 11 10001111 122357899999999876
Q ss_pred hHHHHhh-C----CCCCEEEEcCCc
Q 015441 142 TQEIIKG-L----PKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~-l----~~G~~VIDlSa~ 161 (406)
..+..+. + .++..+||++-+
T Consensus 251 ~~~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 251 YAKIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred hHHHHHHHHhhCCCCCeEEEEeCCC
Confidence 6333332 2 146789999864
No 163
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=93.58 E-value=0.21 Score=50.28 Aligned_cols=91 Identities=19% Similarity=0.277 Sum_probs=51.8
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC---------CCceEEEEeccCcCCc-cccccc-cCccccCCCcccccCcc--cCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH---------PYFGIKLMTADRKAGQ-SIGSVF-PHLISQDLPTMVAVKDA--DFS 128 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h---------p~~elv~l~s~~~~G~-~i~~v~-p~l~~~~~~~~~~~~~~--~~~ 128 (406)
|++||+|+| .|-||+.++++|.++ -.++++.+++++..-. .++-.. ..+.. +.. .. ...+ .-.
T Consensus 2 ~~v~v~l~G-~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~ 77 (333)
T COG0460 2 KTVKVGLLG-LGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTT-DGA-LS-LGDEVLLDE 77 (333)
T ss_pred ceEEEEEEc-cCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhhee-ccc-cc-ccHhhhccc
Confidence 568999999 999999999999853 2467777776532111 011000 00100 100 00 0011 114
Q ss_pred CCCEEEEcCCCcc--hH--HHH-hhCCCCCEEE
Q 015441 129 NVDAVFCCLPHGT--TQ--EII-KGLPKSLKIV 156 (406)
Q Consensus 129 ~vDvVF~al~~~~--s~--~~~-~~l~~G~~VI 156 (406)
+.|+|+.+.+... ++ ++. +++++|..||
T Consensus 78 ~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVV 110 (333)
T COG0460 78 DIDVVVELVGGDVEPAEPADLYLKALENGKHVV 110 (333)
T ss_pred cCCEEEecCcccCCchhhHHHHHHHHHcCCeEE
Confidence 7899999888622 23 333 4568899998
No 164
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.56 E-value=0.21 Score=50.23 Aligned_cols=86 Identities=12% Similarity=0.202 Sum_probs=50.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
++|+|+| .|.+|+.+.+.|...-.+++... ++.. ...... . ......+ ++.+.++|+|++|+|.....
T Consensus 147 ~~VgIIG-~G~IG~~vA~~L~~~~g~~V~~~-d~~~-~~~~~~----~----~~~~~~l-~ell~~aDvIvl~lP~t~~t 214 (332)
T PRK08605 147 LKVAVIG-TGRIGLAVAKIFAKGYGSDVVAY-DPFP-NAKAAT----Y----VDYKDTI-EEAVEGADIVTLHMPATKYN 214 (332)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCEEEEE-CCCc-cHhHHh----h----ccccCCH-HHHHHhCCEEEEeCCCCcch
Confidence 4799999 99999999999843224566544 3221 111110 0 0001112 22346899999999965443
Q ss_pred HH------HhhCCCCCEEEEcCCc
Q 015441 144 EI------IKGLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~------~~~l~~G~~VIDlSa~ 161 (406)
+. .+.++.|..+|+.|--
T Consensus 215 ~~li~~~~l~~mk~gailIN~sRG 238 (332)
T PRK08605 215 HYLFNADLFKHFKKGAVFVNCARG 238 (332)
T ss_pred hhhcCHHHHhcCCCCcEEEECCCC
Confidence 32 3345678899987743
No 165
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.55 E-value=0.12 Score=51.07 Aligned_cols=98 Identities=22% Similarity=0.395 Sum_probs=52.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccc--ccC-ccccCCC-ccc-ccCc-ccCCCCCEEEEc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSV--FPH-LISQDLP-TMV-AVKD-ADFSNVDAVFCC 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v--~p~-l~~~~~~-~~~-~~~~-~~~~~vDvVF~a 136 (406)
|+||+|+| .|.+|..+...|.+.. .++..+......-..+... .+. +.+...+ ... ..+. +...++|+||+|
T Consensus 1 mmkI~iiG-~G~mG~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 1 MMKIAVLG-AGSWGTALAIVLARNG-HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence 46899999 7999999999998642 3554443211110111110 000 0000000 011 1111 123588999999
Q ss_pred CCCcchHHHHhh----CCCCCEEEEcCCcc
Q 015441 137 LPHGTTQEIIKG----LPKSLKIVDLSADF 162 (406)
Q Consensus 137 l~~~~s~~~~~~----l~~G~~VIDlSa~f 162 (406)
++.....+.++. +..+..|||++.-+
T Consensus 79 v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 79 VPSQALREVLKQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEEEEeecc
Confidence 998655555443 34577899987444
No 166
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.53 E-value=0.1 Score=51.61 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=41.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC--cCCccccccccCcc-ccCCCcccc-cCcccCCCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR--KAGQSIGSVFPHLI-SQDLPTMVA-VKDADFSNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~--~~G~~i~~v~p~l~-~~~~~~~~~-~~~~~~~~vDvVF~al~ 138 (406)
|+||+|+|| |.+|..++..+..+...+++.+--.. ..|...+..+.... .... .+.. .+.+++.++|+||++.+
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~-~i~~~~d~~~~~~aDiVii~~~ 79 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDT-KITGTNDYEDIAGSDVVVITAG 79 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCc-EEEeCCCHHHHCCCCEEEECCC
Confidence 469999997 99999999999876533766653211 11222211111110 0011 1111 12234678999999875
No 167
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.53 E-value=0.13 Score=52.59 Aligned_cols=94 Identities=11% Similarity=0.211 Sum_probs=52.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCC----
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP---- 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~---- 138 (406)
.+|.|+| +|-+|+..++.|.... .++..+ +++.. -+.+...+.............+ .+.+.++|+||.|++
T Consensus 168 ~~VlViG-aG~vG~~aa~~a~~lG-a~V~v~-d~~~~~~~~l~~~~g~~v~~~~~~~~~l-~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 168 GDVTIIG-GGVVGTNAAKMANGLG-ATVTIL-DINIDRLRQLDAEFGGRIHTRYSNAYEI-EDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred ceEEEEc-CCHHHHHHHHHHHHCC-CeEEEE-ECCHHHHHHHHHhcCceeEeccCCHHHH-HHHHccCCEEEEccccCCC
Confidence 5799999 5999999999998764 355444 33211 0111111100000000000111 112357899999973
Q ss_pred ---CcchHHHHhhCCCCCEEEEcCCc
Q 015441 139 ---HGTTQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 139 ---~~~s~~~~~~l~~G~~VIDlSa~ 161 (406)
.-++++....++.|..|||++.+
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEecC
Confidence 22456666666778899999865
No 168
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=93.52 E-value=0.094 Score=51.37 Aligned_cols=87 Identities=18% Similarity=0.328 Sum_probs=49.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH-
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ- 143 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~- 143 (406)
||+|+| .|.+|+.+.+.|..+. .++... +++. .+... +........... .+...++|+||+|+|.....
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~~G-~~V~~~-dr~~--~~~~~----~~~~g~~~~~~~-~~~~~~aDivi~~vp~~~~~~ 70 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAKAG-YQLHVT-TIGP--EVADE----LLAAGAVTAETA-RQVTEQADVIFTMVPDSPQVE 70 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHHCC-CeEEEE-cCCH--HHHHH----HHHCCCcccCCH-HHHHhcCCEEEEecCCHHHHH
Confidence 589999 9999999999988653 466544 3321 11111 100001001111 22346899999999975332
Q ss_pred HHH-------hhCCCCCEEEEcCCc
Q 015441 144 EII-------KGLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~-------~~l~~G~~VIDlSa~ 161 (406)
... +.+..|..|||.|..
T Consensus 71 ~v~~~~~~~~~~~~~g~iivd~st~ 95 (291)
T TIGR01505 71 EVAFGENGIIEGAKPGKTLVDMSSI 95 (291)
T ss_pred HHHcCcchHhhcCCCCCEEEECCCC
Confidence 222 123457889998764
No 169
>PLN00106 malate dehydrogenase
Probab=93.50 E-value=0.23 Score=49.89 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=41.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCcCCccccccccCccccCCCccccc-C-cccCCCCCEEEEcCCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVFPHLISQDLPTMVAV-K-DADFSNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~-~-~~~~~~vDvVF~al~~ 139 (406)
.||+|+||+|.||..+...|...+.. |++.+--....|...+-.|.... ..+..+... + .+++.++|+|+++.+.
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~-~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTP-AQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcC-ceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 48999999999999999999865554 56555322223332221110000 001000010 0 1346789999888775
No 170
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=93.47 E-value=0.095 Score=51.36 Aligned_cols=29 Identities=31% Similarity=0.685 Sum_probs=22.8
Q ss_pred EEECcccHHHHHHHHHHHcCCC-ceEEEEe
Q 015441 67 GLLGASGYTGAEIVRLLANHPY-FGIKLMT 95 (406)
Q Consensus 67 aIvGATG~vG~eLlrlL~~hp~-~elv~l~ 95 (406)
.|.||+|++|+.|++.|+++.. .+++.+.
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d 30 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLD 30 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcc
Confidence 3789999999999999987664 5565443
No 171
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.45 E-value=0.17 Score=50.05 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=49.6
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccC----CCCCEEEEcCCC
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADF----SNVDAVFCCLPH 139 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~----~~vDvVF~al~~ 139 (406)
||+|+| .|..|+.+.+.|.+.. .++... +++. .-+.+.. . + ..... +..++ .+.|+||.|+|.
T Consensus 2 ~Ig~IG-lG~MG~~mA~~L~~~g-~~v~v~-dr~~~~~~~~~~----~-g--~~~~~--~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 2 QLGMIG-LGRMGGNMARRLLRGG-HEVVGY-DRNPEAVEALAE----E-G--ATGAD--SLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred EEEEEc-ccHHHHHHHHHHHHCC-CeEEEE-ECCHHHHHHHHH----C-C--CeecC--CHHHHHhhcCCCCEEEEEecC
Confidence 899999 9999999999988653 455443 3321 1111111 0 1 00010 11111 246999999998
Q ss_pred c-chHHHHh----hCCCCCEEEEcCCc
Q 015441 140 G-TTQEIIK----GLPKSLKIVDLSAD 161 (406)
Q Consensus 140 ~-~s~~~~~----~l~~G~~VIDlSa~ 161 (406)
. ...+... .+..|..|||.|.-
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~ 96 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNS 96 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 7 3344432 34568889998764
No 172
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.42 E-value=0.3 Score=48.03 Aligned_cols=102 Identities=15% Similarity=0.238 Sum_probs=57.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-C---ccccccccC------ccccC----CCccc-ccCcccC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-G---QSIGSVFPH------LISQD----LPTMV-AVKDADF 127 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G---~~i~~v~p~------l~~~~----~~~~~-~~~~~~~ 127 (406)
+.||+|+| .|..|..+...|+.+ ..+++.+...... . ..+...... +...+ +..+. ..+.+++
T Consensus 5 ~~~V~ViG-aG~mG~~iA~~~a~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 5 IQRVGVVG-AGQMGAGIAEVCARA-GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred ccEEEEEc-ccHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 35899999 699999999988865 4566555321111 0 011110000 00000 00000 1112345
Q ss_pred CCCCEEEEcCCCcchHHHH------hhC-CCCCEEEEcCCcccCCC
Q 015441 128 SNVDAVFCCLPHGTTQEII------KGL-PKSLKIVDLSADFRLRD 166 (406)
Q Consensus 128 ~~vDvVF~al~~~~s~~~~------~~l-~~G~~VIDlSa~fRl~~ 166 (406)
+++|+||.|.+.....+.. +.+ ..++.++++|+.+...+
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~ 128 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMK 128 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence 7999999999987764322 223 56889999999876544
No 173
>PRK07680 late competence protein ComER; Validated
Probab=93.41 E-value=0.091 Score=51.08 Aligned_cols=100 Identities=17% Similarity=0.288 Sum_probs=58.2
Q ss_pred EEEEECcccHHHHHHHHHHHcCCC--ceEEEEeccCcCC-ccccccccCccccCCCcccccCccc-CCCCCEEEEcCCCc
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPY--FGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDAD-FSNVDAVFCCLPHG 140 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~--~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~-~~~vDvVF~al~~~ 140 (406)
+|+|+| .|.+|+.+++.|.+... .+-+.+.+++... +.+...++ + .... .+..+ ..++|+||+|++..
T Consensus 2 ~I~iIG-~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~---g--~~~~--~~~~~~~~~aDiVilav~p~ 73 (273)
T PRK07680 2 NIGFIG-TGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP---G--IHVA--KTIEEVISQSDLIFICVKPL 73 (273)
T ss_pred EEEEEC-ccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC---C--eEEE--CCHHHHHHhCCEEEEecCHH
Confidence 799999 89999999998875432 2223444443211 11111010 1 1101 11112 35789999999877
Q ss_pred chHHHHhh----CCCCCEEEEcCCcccCCCccchhhhcC
Q 015441 141 TTQEIIKG----LPKSLKIVDLSADFRLRDVSEYEEWYG 175 (406)
Q Consensus 141 ~s~~~~~~----l~~G~~VIDlSa~fRl~~~~~~~~~y~ 175 (406)
...++++. +..+..|||+++... .+..++|++
T Consensus 74 ~~~~vl~~l~~~l~~~~~iis~~ag~~---~~~L~~~~~ 109 (273)
T PRK07680 74 DIYPLLQKLAPHLTDEHCLVSITSPIS---VEQLETLVP 109 (273)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCCC---HHHHHHHcC
Confidence 76666543 345678999988653 334566655
No 174
>PRK13243 glyoxylate reductase; Reviewed
Probab=93.35 E-value=0.2 Score=50.48 Aligned_cols=85 Identities=16% Similarity=0.217 Sum_probs=51.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+++.+.|..+. +++.++ ++..... .... + + .. ..++ ++.+.++|+|++|+|....
T Consensus 151 ktvgIiG-~G~IG~~vA~~l~~~G-~~V~~~-d~~~~~~-~~~~---~-~--~~-~~~l-~ell~~aDiV~l~lP~t~~T 218 (333)
T PRK13243 151 KTIGIIG-FGRIGQAVARRAKGFG-MRILYY-SRTRKPE-AEKE---L-G--AE-YRPL-EELLRESDFVSLHVPLTKET 218 (333)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCC-CEEEEE-CCCCChh-hHHH---c-C--CE-ecCH-HHHHhhCCEEEEeCCCChHH
Confidence 5899999 8999999999998663 566544 4322111 0100 0 1 00 1111 2234689999999995442
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+....++.|..+|+.|-
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aR 241 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTAR 241 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcC
Confidence 233344567889997653
No 175
>PRK06932 glycerate dehydrogenase; Provisional
Probab=93.31 E-value=0.25 Score=49.43 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=49.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+++.++|..+ .+++.++ ++.. ..... . . ...+ ++.+..+|+|.+++|....
T Consensus 148 ktvgIiG-~G~IG~~va~~l~~f-g~~V~~~-~~~~-~~~~~-------~-~---~~~l-~ell~~sDiv~l~~Plt~~T 211 (314)
T PRK06932 148 STLGVFG-KGCLGTEVGRLAQAL-GMKVLYA-EHKG-ASVCR-------E-G---YTPF-EEVLKQADIVTLHCPLTETT 211 (314)
T ss_pred CEEEEEC-CCHHHHHHHHHHhcC-CCEEEEE-CCCc-ccccc-------c-c---cCCH-HHHHHhCCEEEEcCCCChHH
Confidence 5899999 999999999999866 4676654 3221 11000 0 0 1122 2335789999999994433
Q ss_pred -----HHHHhhCCCCCEEEEc
Q 015441 143 -----QEIIKGLPKSLKIVDL 158 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDl 158 (406)
++....++.|+.+|..
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~ 232 (314)
T PRK06932 212 QNLINAETLALMKPTAFLINT 232 (314)
T ss_pred hcccCHHHHHhCCCCeEEEEC
Confidence 3333445678888843
No 176
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.30 E-value=0.25 Score=49.76 Aligned_cols=82 Identities=15% Similarity=0.254 Sum_probs=50.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
++|+|+| .|.+|+.+.+.|..+ .+++.+.. +.. ...... . . ...++ ++.+.++|+|++|+|....
T Consensus 147 ~~VgIIG-~G~IG~~vA~~L~~~-G~~V~~~d-~~~-~~~~~~----~---~--~~~~l-~ell~~aDiVil~lP~t~~t 212 (330)
T PRK12480 147 MTVAIIG-TGRIGAATAKIYAGF-GATITAYD-AYP-NKDLDF----L---T--YKDSV-KEAIKDADIISLHVPANKES 212 (330)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEe-CCh-hHhhhh----h---h--ccCCH-HHHHhcCCEEEEeCCCcHHH
Confidence 4799999 999999999999865 35666553 221 111000 0 0 01111 2335789999999997653
Q ss_pred HH-----HHhhCCCCCEEEEcC
Q 015441 143 QE-----IIKGLPKSLKIVDLS 159 (406)
Q Consensus 143 ~~-----~~~~l~~G~~VIDlS 159 (406)
.. ..+.++.|..+|+.+
T Consensus 213 ~~li~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcC
Confidence 22 223345688899665
No 177
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=93.27 E-value=0.08 Score=52.62 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=25.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC-CceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP-YFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~ 95 (406)
.+|.|.||+|++|+.|++.|..+. ..+++.+.
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~ 37 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNPKKIIIYS 37 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 479999999999999999998653 35665553
No 178
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=93.21 E-value=0.25 Score=51.65 Aligned_cols=41 Identities=24% Similarity=0.469 Sum_probs=34.2
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCcC
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRKA 100 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~~ 100 (406)
.+.+.||+|+|+||-||.+.++++..||+ +++++++..+..
T Consensus 54 ~~~~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni 95 (454)
T PLN02696 54 WDGPKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNV 95 (454)
T ss_pred cCCccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCH
Confidence 34457999999999999999999998876 899999875543
No 179
>PLN02778 3,5-epimerase/4-reductase
Probab=93.15 E-value=0.1 Score=51.32 Aligned_cols=33 Identities=12% Similarity=0.340 Sum_probs=26.1
Q ss_pred ccCCccEEEEECcccHHHHHHHHHHHcCCCceEE
Q 015441 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIK 92 (406)
Q Consensus 59 ~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv 92 (406)
++++++||.|.||+|++|+.|++.|.++. .+++
T Consensus 5 ~~~~~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~ 37 (298)
T PLN02778 5 AGSATLKFLIYGKTGWIGGLLGKLCQEQG-IDFH 37 (298)
T ss_pred CCCCCCeEEEECCCCHHHHHHHHHHHhCC-CEEE
Confidence 34555799999999999999999998653 2544
No 180
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=93.13 E-value=0.22 Score=48.71 Aligned_cols=93 Identities=20% Similarity=0.164 Sum_probs=47.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
..|||+||+|-||..+.|.|..|-.. ++..=.+.+.--+.+...-..+. ... +..++.+.....+++|.++ ....
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~-~~~--i~s~d~~~~~e~i~v~vAs-~~~g 243 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELG-RGK--IMSLDYALPQEDILVWVAS-MPKG 243 (351)
T ss_pred CeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccC-CCe--eeeccccccccceEEEEee-cCCC
Confidence 46999999999999999999865332 33221111111112221111111 111 1223222223334444444 3344
Q ss_pred HHHHhh-CCCCCEEEEcCC
Q 015441 143 QEIIKG-LPKSLKIVDLSA 160 (406)
Q Consensus 143 ~~~~~~-l~~G~~VIDlSa 160 (406)
.++.+. ++.||.|||-.-
T Consensus 244 ~~I~pq~lkpg~~ivD~g~ 262 (351)
T COG5322 244 VEIFPQHLKPGCLIVDGGY 262 (351)
T ss_pred ceechhhccCCeEEEcCCc
Confidence 556665 688999998543
No 181
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.09 E-value=0.21 Score=49.38 Aligned_cols=85 Identities=20% Similarity=0.314 Sum_probs=50.5
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCccc-C---CCCCEEEEcCCC
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDAD-F---SNVDAVFCCLPH 139 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~-~---~~vDvVF~al~~ 139 (406)
||+||| .|.+|+.+.+.|.++. .++.. .+++. .-..+.. . + ..... +.++ . +++|+||.|+|.
T Consensus 2 ~Ig~IG-lG~mG~~mA~~L~~~g-~~v~v-~dr~~~~~~~~~~----~-g--~~~~~--s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 2 KLGLIG-LGKMGGNMAERLREDG-HEVVG-YDVNQEAVDVAGK----L-G--ITARH--SLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred EEEEEc-ccHHHHHHHHHHHhCC-CEEEE-EECCHHHHHHHHH----C-C--CeecC--CHHHHHHhCCCCCEEEEEecC
Confidence 799999 9999999999988653 46654 34332 1111111 0 1 00011 1111 1 236999999998
Q ss_pred c-chHHHHhh----CCCCCEEEEcCCc
Q 015441 140 G-TTQEIIKG----LPKSLKIVDLSAD 161 (406)
Q Consensus 140 ~-~s~~~~~~----l~~G~~VIDlSa~ 161 (406)
. ...+.... +..|..|||.|..
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~ 96 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNS 96 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCC
Confidence 7 44454432 3568899999765
No 182
>PRK06436 glycerate dehydrogenase; Provisional
Probab=93.06 E-value=0.38 Score=47.87 Aligned_cols=82 Identities=18% Similarity=0.281 Sum_probs=51.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+++.++|..+ .+++.++. ++..... .. . ...++ ++.+.++|+|++++|....
T Consensus 123 ktvgIiG-~G~IG~~vA~~l~af-G~~V~~~~-r~~~~~~-------~~--~--~~~~l-~ell~~aDiv~~~lp~t~~T 187 (303)
T PRK06436 123 KSLGILG-YGGIGRRVALLAKAF-GMNIYAYT-RSYVNDG-------IS--S--IYMEP-EDIMKKSDFVLISLPLTDET 187 (303)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHC-CCEEEEEC-CCCcccC-------cc--c--ccCCH-HHHHhhCCEEEECCCCCchh
Confidence 5799999 999999999988765 46776654 2211000 00 0 01111 2234689999999996544
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+....++.|..+|+.|-
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sR 210 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVAR 210 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCC
Confidence 223344567889997653
No 183
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=93.04 E-value=0.13 Score=52.72 Aligned_cols=38 Identities=21% Similarity=0.472 Sum_probs=33.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCcC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRKA 100 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~~ 100 (406)
|.||+|+|+||-||.+.++.+..||+ +++++++..+..
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~ 39 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNV 39 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCH
Confidence 36899999999999999999998875 899999876543
No 184
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=93.02 E-value=0.22 Score=47.74 Aligned_cols=30 Identities=20% Similarity=0.478 Sum_probs=24.7
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
|.|.||||++|+.|++.|.+.. .+++.+..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG-HEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC-CEEEEEeC
Confidence 5799999999999999988643 67877763
No 185
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.01 E-value=0.13 Score=50.32 Aligned_cols=104 Identities=19% Similarity=0.282 Sum_probs=60.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC---CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp---~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
|+||+|+| .|.+|+.+++.|.+.. ..++..+.. +.. .+.......+.. .....+. .+...++|+||+|+++
T Consensus 1 m~~I~iIG-~G~mG~ala~~L~~~g~~~~~~V~~~~r-~~~-~~~~~l~~~~~~--~~~~~~~-~e~~~~aDvVilavpp 74 (277)
T PRK06928 1 MEKIGFIG-YGSMADMIATKLLETEVATPEEIILYSS-SKN-EHFNQLYDKYPT--VELADNE-AEIFTKCDHSFICVPP 74 (277)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCCCcccEEEEeC-CcH-HHHHHHHHHcCC--eEEeCCH-HHHHhhCCEEEEecCH
Confidence 46899999 9999999999887543 245555543 221 111111000100 0000111 1123578999999998
Q ss_pred cchHHHHhh----CCCCCEEEEcCCcccCCCccchhhhcC
Q 015441 140 GTTQEIIKG----LPKSLKIVDLSADFRLRDVSEYEEWYG 175 (406)
Q Consensus 140 ~~s~~~~~~----l~~G~~VIDlSa~fRl~~~~~~~~~y~ 175 (406)
....++++. +..++.||++.+-..++ ..++|.+
T Consensus 75 ~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~---~l~~~~~ 111 (277)
T PRK06928 75 LAVLPLLKDCAPVLTPDRHVVSIAAGVSLD---DLLEITP 111 (277)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEECCCCCHH---HHHHHcC
Confidence 877776653 34577888887765443 4566654
No 186
>PLN03139 formate dehydrogenase; Provisional
Probab=93.00 E-value=0.26 Score=50.77 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=50.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|+|+| .|.+|+.+++.|..+ .+++.+. ++......... .. + .....++ ++.+.++|+|++++|.....
T Consensus 200 ktVGIVG-~G~IG~~vA~~L~af-G~~V~~~-d~~~~~~~~~~---~~-g--~~~~~~l-~ell~~sDvV~l~lPlt~~T 269 (386)
T PLN03139 200 KTVGTVG-AGRIGRLLLQRLKPF-NCNLLYH-DRLKMDPELEK---ET-G--AKFEEDL-DAMLPKCDVVVINTPLTEKT 269 (386)
T ss_pred CEEEEEe-ecHHHHHHHHHHHHC-CCEEEEE-CCCCcchhhHh---hc-C--ceecCCH-HHHHhhCCEEEEeCCCCHHH
Confidence 5799999 999999999999865 4676554 33211111100 00 0 0001112 22346899999999954432
Q ss_pred -H-----HHhhCCCCCEEEEcC
Q 015441 144 -E-----IIKGLPKSLKIVDLS 159 (406)
Q Consensus 144 -~-----~~~~l~~G~~VIDlS 159 (406)
. ....++.|..+|+.+
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEECC
Confidence 2 223346788999654
No 187
>PLN02214 cinnamoyl-CoA reductase
Probab=92.92 E-value=0.19 Score=50.36 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=26.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.+|.|.||||++|+.|++.|.++. .+++.+.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~ 41 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG-YTVKGTV 41 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEe
Confidence 4579999999999999999998653 4666654
No 188
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=92.83 E-value=0.12 Score=50.18 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=24.0
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|.|.||||++|+.|++.|.+....++..+.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~ 30 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVD 30 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEe
Confidence 579999999999999999876644565543
No 189
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=92.78 E-value=0.22 Score=49.84 Aligned_cols=71 Identities=20% Similarity=0.283 Sum_probs=42.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCcCCccccccccCccccCCCcccc-c-C---cccCCCCCEEEEcCC
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVFPHLISQDLPTMVA-V-K---DADFSNVDAVFCCLP 138 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~-~-~---~~~~~~vDvVF~al~ 138 (406)
||+|+||+|.||..+.-.|...+.. |++.+--....|..++-.|-. ... .+.. . + .+++.++|+|+.+.+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~---~~~-~i~~~~~~~~~~~~~~daDivvitaG 76 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIP---TAA-SVKGFSGEEGLENALKGADVVVIPAG 76 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCC---cCc-eEEEecCCCchHHHcCCCCEEEEeCC
Confidence 6999999999999999988765543 566653222334433322211 001 1111 1 1 246688999999887
Q ss_pred C
Q 015441 139 H 139 (406)
Q Consensus 139 ~ 139 (406)
.
T Consensus 77 ~ 77 (312)
T TIGR01772 77 V 77 (312)
T ss_pred C
Confidence 5
No 190
>PLN02928 oxidoreductase family protein
Probab=92.65 E-value=0.39 Score=48.73 Aligned_cols=90 Identities=16% Similarity=0.198 Sum_probs=51.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccc--cc-----CccccCCCcccccCcccCCCCCEEEEc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSV--FP-----HLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v--~p-----~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
.+|+|+| .|.+|+++.+.|..+. +++.++. +.. ....... +| .+..... ...++ ++.+.++|+|+++
T Consensus 160 ktvGIiG-~G~IG~~vA~~l~afG-~~V~~~d-r~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~L-~ell~~aDiVvl~ 233 (347)
T PLN02928 160 KTVFILG-YGAIGIELAKRLRPFG-VKLLATR-RSW-TSEPEDGLLIPNGDVDDLVDEKG-GHEDI-YEFAGEADIVVLC 233 (347)
T ss_pred CEEEEEC-CCHHHHHHHHHHhhCC-CEEEEEC-CCC-ChhhhhhhccccccccccccccC-cccCH-HHHHhhCCEEEEC
Confidence 5899999 9999999999998764 5776653 221 1000000 00 0000000 01122 2335689999999
Q ss_pred CCCcch------HHHHhhCCCCCEEEEcC
Q 015441 137 LPHGTT------QEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 137 l~~~~s------~~~~~~l~~G~~VIDlS 159 (406)
+|.... ++....++.|..+|+.+
T Consensus 234 lPlt~~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 234 CTLTKETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred CCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence 995433 33334456788999665
No 191
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=92.62 E-value=0.66 Score=46.02 Aligned_cols=93 Identities=19% Similarity=0.272 Sum_probs=50.4
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-----cCCccccccccCccccCCCcccccCcccCCCCCEEEEc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-----KAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-----~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
+++||+|+| .|.+|..+...|.... .++..+.... ..|..+................ +.++....|+||+|
T Consensus 4 ~~m~I~IiG-~GaiG~~lA~~L~~~g-~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~vila 79 (313)
T PRK06249 4 ETPRIGIIG-TGAIGGFYGAMLARAG-FDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYR--SAEDMPPCDWVLVG 79 (313)
T ss_pred cCcEEEEEC-CCHHHHHHHHHHHHCC-CeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEc--chhhcCCCCEEEEE
Confidence 346899999 9999999999998642 4555554221 1122222111110000011011 12233578999999
Q ss_pred CCCcchHHHHhh----CCCCCEEEEc
Q 015441 137 LPHGTTQEIIKG----LPKSLKIVDL 158 (406)
Q Consensus 137 l~~~~s~~~~~~----l~~G~~VIDl 158 (406)
++.....+..+. +..+..||.+
T Consensus 80 vK~~~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 80 LKTTANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred ecCCChHhHHHHHhhhcCCCCEEEEe
Confidence 997766655543 3344556644
No 192
>PLN02688 pyrroline-5-carboxylate reductase
Probab=92.52 E-value=0.24 Score=47.69 Aligned_cols=102 Identities=18% Similarity=0.310 Sum_probs=56.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC---CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp---~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
+||+++| .|..|..+++.|.+.. ..++....+++. .+ ..... .+ + ....... .+...++|+||+|++..
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~-~~-~~~~~-~~-g--~~~~~~~-~e~~~~aDvVil~v~~~ 72 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVPPSRISTADDSNP-AR-RDVFQ-SL-G--VKTAASN-TEVVKSSDVIILAVKPQ 72 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCCcceEEEEeCCCH-HH-HHHHH-Hc-C--CEEeCCh-HHHHhcCCEEEEEECcH
Confidence 4799999 9999999999887532 235544323321 11 11100 01 1 1111111 12235789999999877
Q ss_pred chHHHHhh----CCCCCEEEEcCCcccCCCccchhhhcCC
Q 015441 141 TTQEIIKG----LPKSLKIVDLSADFRLRDVSEYEEWYGQ 176 (406)
Q Consensus 141 ~s~~~~~~----l~~G~~VIDlSa~fRl~~~~~~~~~y~~ 176 (406)
...+.... +..+..||+..+.. +.+..++|.+.
T Consensus 73 ~~~~vl~~l~~~~~~~~~iIs~~~g~---~~~~l~~~~~~ 109 (266)
T PLN02688 73 VVKDVLTELRPLLSKDKLLVSVAAGI---TLADLQEWAGG 109 (266)
T ss_pred HHHHHHHHHHhhcCCCCEEEEecCCC---cHHHHHHHcCC
Confidence 66666543 34567788775543 33445566543
No 193
>PRK07201 short chain dehydrogenase; Provisional
Probab=92.50 E-value=0.18 Score=54.69 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=26.6
Q ss_pred cEEEEECcccHHHHHHHHHHHc-CCCceEEEEec
Q 015441 64 VRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTA 96 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s 96 (406)
+||.|.||||++|+.|++.|.. ....+++.+..
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R 34 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVR 34 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 3799999999999999999885 34567776653
No 194
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=92.31 E-value=0.21 Score=49.11 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=25.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
...+|.|.||+|++|+.|++.|.+.. .+++.+.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G-~~V~~~~ 36 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRG-YTINATV 36 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 34689999999999999999998653 4555543
No 195
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=92.28 E-value=0.16 Score=48.77 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=24.4
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
||.|+||||++|+.|++.|.+. ..+++.+.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-g~~v~~~~ 30 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-GRVVVALT 30 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-CCEEEEeC
Confidence 5899999999999999998865 34665553
No 196
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=92.23 E-value=0.25 Score=49.60 Aligned_cols=96 Identities=9% Similarity=0.075 Sum_probs=54.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
..+++|+| +|..|+..++.|.....++-+.+.+++... +.+.+....+ +......... .+...++|+|++|++...
T Consensus 128 ~~~lgiiG-~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~-g~~v~~~~~~-~eav~~aDiVitaT~s~~ 204 (325)
T TIGR02371 128 SSVLGIIG-AGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY-EVPVRAATDP-REAVEGCDILVTTTPSRK 204 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh-CCcEEEeCCH-HHHhccCCEEEEecCCCC
Confidence 46899999 999999998988766667777777654321 1111100001 1011111111 223478999999998643
Q ss_pred hHHHHhhCCCCCEEEEcCCc
Q 015441 142 TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~ 161 (406)
-.-....++.|+.|.-.+++
T Consensus 205 P~~~~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 205 PVVKADWVSEGTHINAIGAD 224 (325)
T ss_pred cEecHHHcCCCCEEEecCCC
Confidence 21112235778887766654
No 197
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=92.19 E-value=0.28 Score=48.47 Aligned_cols=86 Identities=20% Similarity=0.306 Sum_probs=49.9
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-H
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT-Q 143 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s-~ 143 (406)
||++|| .|..|..+.+.|.+.. +++... ++...-..+.. .+ ....... .+...++|+||+|++.... .
T Consensus 2 ~Ig~IG-lG~MG~~ma~~L~~~G-~~v~v~-~~~~~~~~~~~-----~g--~~~~~s~-~~~~~~advVi~~v~~~~~v~ 70 (292)
T PRK15059 2 KLGFIG-LGIMGTPMAINLARAG-HQLHVT-TIGPVADELLS-----LG--AVSVETA-RQVTEASDIIFIMVPDTPQVE 70 (292)
T ss_pred eEEEEc-cCHHHHHHHHHHHHCC-CeEEEE-eCCHhHHHHHH-----cC--CeecCCH-HHHHhcCCEEEEeCCChHHHH
Confidence 799999 9999999999888653 455433 32211111110 01 1001111 1123578999999997743 3
Q ss_pred HHH-------hhCCCCCEEEEcCCc
Q 015441 144 EII-------KGLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~-------~~l~~G~~VIDlSa~ 161 (406)
+.. +.+..|..|||.|..
T Consensus 71 ~v~~~~~g~~~~~~~g~ivvd~sT~ 95 (292)
T PRK15059 71 EVLFGENGCTKASLKGKTIVDMSSI 95 (292)
T ss_pred HHHcCCcchhccCCCCCEEEECCCC
Confidence 322 123457889999875
No 198
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=92.19 E-value=0.47 Score=48.72 Aligned_cols=81 Identities=17% Similarity=0.266 Sum_probs=50.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc--
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-- 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-- 141 (406)
.+|||+| .|.||+.+.+.|..+ .+++.... +..... . ... .+.++ ++.+.++|+|++++|-..
T Consensus 117 ktvGIIG-~G~IG~~vA~~l~a~-G~~V~~~d-p~~~~~--~--------~~~-~~~~L-~ell~~sDiI~lh~PLt~~g 181 (378)
T PRK15438 117 RTVGIVG-VGNVGRRLQARLEAL-GIKTLLCD-PPRADR--G--------DEG-DFRSL-DELVQEADILTFHTPLFKDG 181 (378)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHC-CCEEEEEC-Cccccc--c--------ccc-ccCCH-HHHHhhCCEEEEeCCCCCCc
Confidence 5899999 999999999999876 46765553 211100 0 000 01122 233468999999998544
Q ss_pred ---h-----HHHHhhCCCCCEEEEcC
Q 015441 142 ---T-----QEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 142 ---s-----~~~~~~l~~G~~VIDlS 159 (406)
+ .+....++.|..+|..|
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~a 207 (378)
T PRK15438 182 PYKTLHLADEKLIRSLKPGAILINAC 207 (378)
T ss_pred ccccccccCHHHHhcCCCCcEEEECC
Confidence 2 33444556788888544
No 199
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=92.18 E-value=0.35 Score=47.95 Aligned_cols=94 Identities=10% Similarity=0.072 Sum_probs=56.5
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
+++.||.|.|.||-.|+.+++.|.++..-.+..++-++.. ..+. .-.-++.+.++ ++.- ++|+++.+.|..
T Consensus 6 ~~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~-~~v~------G~~~y~sv~dl-p~~~-~~DlAvi~vp~~ 76 (291)
T PRK05678 6 NKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGG-TTVL------GLPVFNTVAEA-VEAT-GANASVIYVPPP 76 (291)
T ss_pred cCCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCC-CeEe------CeeccCCHHHH-hhcc-CCCEEEEEcCHH
Confidence 3457999999999999999998887654344455433101 1111 00111112222 1100 289999999998
Q ss_pred chHHHHhhC-CCCC--EEEEcCCcccC
Q 015441 141 TTQEIIKGL-PKSL--KIVDLSADFRL 164 (406)
Q Consensus 141 ~s~~~~~~l-~~G~--~VIDlSa~fRl 164 (406)
...+.++.+ ++|+ .|| .|+-|.+
T Consensus 77 ~v~~~l~e~~~~gvk~avI-~s~Gf~~ 102 (291)
T PRK05678 77 FAADAILEAIDAGIDLIVC-ITEGIPV 102 (291)
T ss_pred HHHHHHHHHHHCCCCEEEE-ECCCCCH
Confidence 888877765 6665 345 5666754
No 200
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.16 E-value=0.25 Score=49.12 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=40.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc---CCccccccccC-ccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK---AGQSIGSVFPH-LISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~---~G~~i~~v~p~-l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
+||+|+|+ |.+|..++..|...... +++.+ ++.. .|...+..+.. +.. .. .+..-+.+++.++|+||+|.+
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~-D~~~~~~~g~a~dl~~~~~~~~-~~-~i~~~d~~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLV-DINKAKAEGEAMDLAHGTPFVK-PV-RIYAGDYADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEE-ECCchhhhhHHHHHHccccccC-Ce-EEeeCCHHHhCCCCEEEEccC
Confidence 38999995 99999999999876544 45544 4322 12111111100 000 00 111122345679999999988
Q ss_pred Cc
Q 015441 139 HG 140 (406)
Q Consensus 139 ~~ 140 (406)
..
T Consensus 77 ~~ 78 (308)
T cd05292 77 AN 78 (308)
T ss_pred CC
Confidence 53
No 201
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=92.06 E-value=0.56 Score=47.26 Aligned_cols=101 Identities=20% Similarity=0.359 Sum_probs=60.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHc----CCCce-EEE--EeccCcCC--cccccc----ccC---ccccCCCcc-ccc-C-
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN----HPYFG-IKL--MTADRKAG--QSIGSV----FPH---LISQDLPTM-VAV-K- 123 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~----hp~~e-lv~--l~s~~~~G--~~i~~v----~p~---l~~~~~~~~-~~~-~- 123 (406)
..||+|+| +|..|..+.+++.+ ||.++ .+. +...+-.| .++.++ |-+ |++.++|.- ... |
T Consensus 21 ~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 21 PLKVCIVG-SGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred ceEEEEEc-cChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 47999999 99999999999973 55433 112 22233333 233322 111 233333321 111 1
Q ss_pred cccCCCCCEEEEcCCCcchHHHHhhC----CCCCEEEEcCCcccC
Q 015441 124 DADFSNVDAVFCCLPHGTTQEIIKGL----PKSLKIVDLSADFRL 164 (406)
Q Consensus 124 ~~~~~~vDvVF~al~~~~s~~~~~~l----~~G~~VIDlSa~fRl 164 (406)
.+...++|++++.+||.....+.+.+ +.++..|+++--|-.
T Consensus 100 ~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred HHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 11235899999999999988877653 467888988766543
No 202
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.00 E-value=0.2 Score=50.16 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=26.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+||.|.|||||+|+.|++.|.+.. .+++++.
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d 46 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLN-QTVIGLD 46 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC-CEEEEEe
Confidence 589999999999999999998764 5776664
No 203
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=91.97 E-value=0.21 Score=52.31 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=43.9
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcC-------CCc-eEEEEec--cCcCCccccccccCcc-ccCCCcccccCcccCCC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANH-------PYF-GIKLMTA--DRKAGQSIGSVFPHLI-SQDLPTMVAVKDADFSN 129 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~h-------p~~-elv~l~s--~~~~G~~i~~v~p~l~-~~~~~~~~~~~~~~~~~ 129 (406)
.+.+||+|+||+|.||..++-.|... +.. ||+.+-- ....|..++-.+..+. ..++. +..-+.+++.+
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~-i~~~~ye~~kd 176 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVS-IGIDPYEVFQD 176 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceE-EecCCHHHhCc
Confidence 34589999999999999999988754 332 5554421 1122333332221100 01111 11112346788
Q ss_pred CCEEEEcCCC
Q 015441 130 VDAVFCCLPH 139 (406)
Q Consensus 130 vDvVF~al~~ 139 (406)
+|+|+++.+.
T Consensus 177 aDiVVitAG~ 186 (444)
T PLN00112 177 AEWALLIGAK 186 (444)
T ss_pred CCEEEECCCC
Confidence 9999888775
No 204
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=91.95 E-value=0.18 Score=51.88 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=42.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC------ceEEEE-ecc---CcCCccccccc---cCccccCCCcccccCcccCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY------FGIKLM-TAD---RKAGQSIGSVF---PHLISQDLPTMVAVKDADFSN 129 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~------~elv~l-~s~---~~~G~~i~~v~---p~l~~~~~~~~~~~~~~~~~~ 129 (406)
..||+|+||+|.||..++-.|..... +.|+++ .+. ...|+.++-.+ |.+. .+. +..-+.+++.+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~--~v~-i~~~~y~~~kd 120 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLR--EVS-IGIDPYEVFED 120 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcC--ceE-EecCCHHHhCC
Confidence 58999999999999999998875333 345445 232 22233332222 1111 111 11112345678
Q ss_pred CCEEEEcCCC
Q 015441 130 VDAVFCCLPH 139 (406)
Q Consensus 130 vDvVF~al~~ 139 (406)
+|+|+++.+.
T Consensus 121 aDIVVitAG~ 130 (387)
T TIGR01757 121 ADWALLIGAK 130 (387)
T ss_pred CCEEEECCCC
Confidence 8998887764
No 205
>PLN02650 dihydroflavonol-4-reductase
Probab=91.90 E-value=0.21 Score=49.88 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=25.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 6 k~iLVTGatGfIGs~l~~~L~~~G-~~V~~~~ 36 (351)
T PLN02650 6 ETVCVTGASGFIGSWLVMRLLERG-YTVRATV 36 (351)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHCC-CEEEEEE
Confidence 479999999999999999998753 4666654
No 206
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=91.90 E-value=0.2 Score=49.32 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=25.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCC-CceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHP-YFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp-~~elv~l~ 95 (406)
+|.|.||||++|+.|++.|.++. ..+++++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 48899999999999999998763 35777775
No 207
>PLN00203 glutamyl-tRNA reductase
Probab=91.90 E-value=0.21 Score=53.32 Aligned_cols=94 Identities=20% Similarity=0.284 Sum_probs=52.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT- 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~- 141 (406)
.+|+|+| +|-+|+.+++.|..+..-++..+ ++.. ....+...++.... ....+.+. .+.+.++|+||.|++...
T Consensus 267 kkVlVIG-AG~mG~~~a~~L~~~G~~~V~V~-nRs~era~~La~~~~g~~i-~~~~~~dl-~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 267 ARVLVIG-AGKMGKLLVKHLVSKGCTKMVVV-NRSEERVAALREEFPDVEI-IYKPLDEM-LACAAEADVVFTSTSSETP 342 (519)
T ss_pred CEEEEEe-CHHHHHHHHHHHHhCCCCeEEEE-eCCHHHHHHHHHHhCCCce-EeecHhhH-HHHHhcCCEEEEccCCCCC
Confidence 5899999 59999999999987654455444 3321 11122211111000 00001111 122468999999987543
Q ss_pred --hHHHHhhCC----C-C--CEEEEcCCc
Q 015441 142 --TQEIIKGLP----K-S--LKIVDLSAD 161 (406)
Q Consensus 142 --s~~~~~~l~----~-G--~~VIDlSa~ 161 (406)
..++++.+. . + ..+||++=+
T Consensus 343 vI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 343 LFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred eeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 456665541 1 2 378999865
No 208
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=91.89 E-value=0.62 Score=46.50 Aligned_cols=79 Identities=13% Similarity=0.244 Sum_probs=49.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| +|.||+++.+++..+ .+++.+.. +. ++.... .+. ..++ ++.+..+|+|.+++|....
T Consensus 146 ktvGIiG-~G~IG~~vA~~~~~f-gm~V~~~d-~~--~~~~~~--------~~~-~~~l-~ell~~sDvv~lh~Plt~~T 210 (311)
T PRK08410 146 KKWGIIG-LGTIGKRVAKIAQAF-GAKVVYYS-TS--GKNKNE--------EYE-RVSL-EELLKTSDIISIHAPLNEKT 210 (311)
T ss_pred CEEEEEC-CCHHHHHHHHHHhhc-CCEEEEEC-CC--cccccc--------Cce-eecH-HHHhhcCCEEEEeCCCCchh
Confidence 5799999 999999999999866 46776553 21 111010 010 1122 2345789999999995433
Q ss_pred -----HHHHhhCCCCCEEEE
Q 015441 143 -----QEIIKGLPKSLKIVD 157 (406)
Q Consensus 143 -----~~~~~~l~~G~~VID 157 (406)
++....++.|..+|-
T Consensus 211 ~~li~~~~~~~Mk~~a~lIN 230 (311)
T PRK08410 211 KNLIAYKELKLLKDGAILIN 230 (311)
T ss_pred hcccCHHHHHhCCCCeEEEE
Confidence 333444567888883
No 209
>PRK06487 glycerate dehydrogenase; Provisional
Probab=91.88 E-value=0.54 Score=47.05 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=49.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.||+++.+.|..+ .+++.+.. +. +.... . + ...+ ++.+..+|+|.+++|....
T Consensus 149 ktvgIiG-~G~IG~~vA~~l~~f-gm~V~~~~-~~--~~~~~-----~---~---~~~l-~ell~~sDiv~l~lPlt~~T 211 (317)
T PRK06487 149 KTLGLLG-HGELGGAVARLAEAF-GMRVLIGQ-LP--GRPAR-----P---D---RLPL-DELLPQVDALTLHCPLTEHT 211 (317)
T ss_pred CEEEEEC-CCHHHHHHHHHHhhC-CCEEEEEC-CC--CCccc-----c---c---ccCH-HHHHHhCCEEEECCCCChHH
Confidence 5799999 999999999999876 46776553 21 11000 0 0 1112 2345789999999995433
Q ss_pred -----HHHHhhCCCCCEEEEc
Q 015441 143 -----QEIIKGLPKSLKIVDL 158 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDl 158 (406)
++....++.|..+|-.
T Consensus 212 ~~li~~~~~~~mk~ga~lIN~ 232 (317)
T PRK06487 212 RHLIGARELALMKPGALLINT 232 (317)
T ss_pred hcCcCHHHHhcCCCCeEEEEC
Confidence 3333445678888833
No 210
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=91.88 E-value=0.18 Score=50.45 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=26.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+||.|.||+|++|+.|++.|.++. .+++.+.
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~ 41 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRG-YTVHATL 41 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 489999999999999999998764 4666654
No 211
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=91.72 E-value=0.21 Score=50.15 Aligned_cols=95 Identities=16% Similarity=0.224 Sum_probs=53.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
..+++|+| +|..|+..++.|.....++-+.+.+++.. .+.+........+.+....... ++.+.++|+|+.||+...
T Consensus 129 ~~~v~iiG-aG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~-~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 129 SSVVAIFG-AGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDP-RAAMSGADIIVTTTPSET 206 (326)
T ss_pred CcEEEEEC-CCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCH-HHHhccCCEEEEecCCCC
Confidence 35899999 89999999998874334555566655431 1111111100001111001111 223468999999998743
Q ss_pred hHHHH--hhCCCCCEEEEcCCc
Q 015441 142 TQEII--KGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~--~~l~~G~~VIDlSa~ 161 (406)
.+. ..++.|..|.+.+++
T Consensus 207 --p~i~~~~l~~g~~i~~vg~~ 226 (326)
T TIGR02992 207 --PILHAEWLEPGQHVTAMGSD 226 (326)
T ss_pred --cEecHHHcCCCcEEEeeCCC
Confidence 222 235678888877665
No 212
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=91.69 E-value=0.23 Score=42.22 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=46.8
Q ss_pred EEEEECcc---cHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 65 RIGLLGAS---GYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 65 kVaIvGAT---G~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
+|||+||+ +..|..+++.|.++ .+++..++-+. +.+. + .+.+..+++ .-..+|++++|++...
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~-G~~v~~Vnp~~---~~i~-------G--~~~y~sl~e-~p~~iDlavv~~~~~~ 67 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAA-GYEVYPVNPKG---GEIL-------G--IKCYPSLAE-IPEPIDLAVVCVPPDK 67 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHT-T-EEEEESTTC---SEET-------T--EE-BSSGGG-CSST-SEEEE-S-HHH
T ss_pred EEEEEcccCCCCChHHHHHHHHHhC-CCEEEEECCCc---eEEC-------c--EEeeccccC-CCCCCCEEEEEcCHHH
Confidence 69999998 77899999988874 36888886432 1111 1 111222211 1257899999999999
Q ss_pred hHHHHhhC-CCCC-EEEEcCC
Q 015441 142 TQEIIKGL-PKSL-KIVDLSA 160 (406)
Q Consensus 142 s~~~~~~l-~~G~-~VIDlSa 160 (406)
..++++.+ +.|+ .|+=.++
T Consensus 68 ~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 68 VPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp HHHHHHHHHHHT-SEEEE-TT
T ss_pred HHHHHHHHHHcCCCEEEEEcc
Confidence 98888765 4454 2333555
No 213
>PLN02602 lactate dehydrogenase
Probab=91.68 E-value=0.3 Score=49.69 Aligned_cols=73 Identities=12% Similarity=0.238 Sum_probs=42.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccC--cCCccccccccC-ccccCCCcccc-cCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADR--KAGQSIGSVFPH-LISQDLPTMVA-VKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~--~~G~~i~~v~p~-l~~~~~~~~~~-~~~~~~~~vDvVF~al~ 138 (406)
.||+|+|| |.||..++-.|...+-. |++.+--.. ..|...+-.|.. +... . .+.. .+.+++.++|+|+++.+
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~-~-~i~~~~dy~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPR-T-KILASTDYAVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCC-C-EEEeCCCHHHhCCCCEEEECCC
Confidence 59999995 99999999988865554 565554222 234333322211 1111 1 1221 12345679999999877
Q ss_pred C
Q 015441 139 H 139 (406)
Q Consensus 139 ~ 139 (406)
.
T Consensus 115 ~ 115 (350)
T PLN02602 115 A 115 (350)
T ss_pred C
Confidence 4
No 214
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.62 E-value=0.27 Score=49.11 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=41.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccC--cCCccccccccC-ccccCCCcccc-cCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADR--KAGQSIGSVFPH-LISQDLPTMVA-VKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~--~~G~~i~~v~p~-l~~~~~~~~~~-~~~~~~~~vDvVF~al~ 138 (406)
.||+|+|| |.||..++-.|...+-. |++.+--.+ ..|...+--|.. +... ..+.. -+.+++.++|+|+.+.+
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~--~~v~~~~dy~~~~~adivvitaG 80 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKN--PKIEADKDYSVTANSKVVIVTAG 80 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCC--CEEEECCCHHHhCCCCEEEECCC
Confidence 59999995 99999999988865554 566653222 123322211110 1110 11221 22345789999999877
Q ss_pred C
Q 015441 139 H 139 (406)
Q Consensus 139 ~ 139 (406)
.
T Consensus 81 ~ 81 (312)
T cd05293 81 A 81 (312)
T ss_pred C
Confidence 4
No 215
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=91.56 E-value=0.39 Score=48.27 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=24.4
Q ss_pred EEEEECcccHHHHHHHHHHHcCCC------ceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPY------FGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~------~elv~l~ 95 (406)
||+|+||+|.||..++..|....- ++++.+-
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD 37 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLD 37 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEe
Confidence 699999999999999998875333 3576663
No 216
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=91.54 E-value=0.43 Score=51.08 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=49.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+++.+.|..+. +++.++. +......... + + ......+ ++.+.++|+|++|+|....
T Consensus 139 ktvgIiG-~G~IG~~vA~~l~~fG-~~V~~~d-~~~~~~~~~~----~-g--~~~~~~l-~ell~~aDvV~l~lPlt~~T 207 (525)
T TIGR01327 139 KTLGVIG-LGRIGSIVAKRAKAFG-MKVLAYD-PYISPERAEQ----L-G--VELVDDL-DELLARADFITVHTPLTPET 207 (525)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCC-CEEEEEC-CCCChhHHHh----c-C--CEEcCCH-HHHHhhCCEEEEccCCChhh
Confidence 5799999 9999999999998763 5766653 2111111110 1 0 1001111 2334689999999995532
Q ss_pred -----HHHHhhCCCCCEEEEcC
Q 015441 143 -----QEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlS 159 (406)
.+....++.|+.+|+.+
T Consensus 208 ~~li~~~~l~~mk~ga~lIN~a 229 (525)
T TIGR01327 208 RGLIGAEELAKMKKGVIIVNCA 229 (525)
T ss_pred ccCcCHHHHhcCCCCeEEEEcC
Confidence 23333345677777654
No 217
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=91.49 E-value=0.56 Score=48.23 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=49.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc--
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-- 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-- 141 (406)
.+|+|+| .|.+|+.+.+.|..+ .+++.+. ++..... . .... +..+ ++.+.++|+|.+++|-..
T Consensus 117 ktvGIIG-~G~IG~~va~~l~a~-G~~V~~~-Dp~~~~~--~------~~~~---~~~l-~ell~~aDiV~lh~Plt~~g 181 (381)
T PRK00257 117 RTYGVVG-AGHVGGRLVRVLRGL-GWKVLVC-DPPRQEA--E------GDGD---FVSL-ERILEECDVISLHTPLTKEG 181 (381)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHC-CCEEEEE-CCccccc--c------cCcc---ccCH-HHHHhhCCEEEEeCcCCCCc
Confidence 5799999 999999999999865 3566554 3211100 0 0001 1112 223468999999999643
Q ss_pred ---h-----HHHHhhCCCCCEEEEcC
Q 015441 142 ---T-----QEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 142 ---s-----~~~~~~l~~G~~VIDlS 159 (406)
+ .+....++.|..+|..|
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~a 207 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINAS 207 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECC
Confidence 2 33344456788888544
No 218
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.47 E-value=0.26 Score=49.15 Aligned_cols=73 Identities=16% Similarity=0.270 Sum_probs=41.0
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccC--cCCcccccccc-Cccc-cCCCcccccCcccCCCCCEEEEcCCC
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADR--KAGQSIGSVFP-HLIS-QDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~--~~G~~i~~v~p-~l~~-~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
||+|+|| |.||..++-.|...+.+ |++.+--.. ..|...+-.|- .+.. .... +..-+.+++.++|+|+.+.+.
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~-i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTK-IRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEE-EEECCHHHhCCCCEEEECCCC
Confidence 6999996 99999999988866655 566553221 22333322220 0110 0111 111123456788988888774
No 219
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.33 E-value=0.3 Score=47.88 Aligned_cols=99 Identities=14% Similarity=0.254 Sum_probs=52.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC---C-ccccccccCcc-ccCC----------Cccc-ccC-ccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA---G-QSIGSVFPHLI-SQDL----------PTMV-AVK-DAD 126 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~---G-~~i~~v~p~l~-~~~~----------~~~~-~~~-~~~ 126 (406)
.||+|+| +|..|..+...|+.+. .++..+.-+... . +.+....+.+. ...+ ..+. ..+ .+.
T Consensus 4 ~kIaViG-aG~mG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 4 KNVTVAG-AGVLGSQIAFQTAFHG-FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred cEEEEEC-CCHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 5899999 7999999999998653 355444321110 0 01100000000 0000 0010 111 123
Q ss_pred CCCCCEEEEcCCCcch--HHHHhh----CCCCCEEEEcCCcccC
Q 015441 127 FSNVDAVFCCLPHGTT--QEIIKG----LPKSLKIVDLSADFRL 164 (406)
Q Consensus 127 ~~~vDvVF~al~~~~s--~~~~~~----l~~G~~VIDlSa~fRl 164 (406)
+.++|+||+|.|.... +++... +..++.+.++++.++.
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~ 125 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLP 125 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCH
Confidence 4789999999997643 333332 3456777788887654
No 220
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=91.21 E-value=0.55 Score=47.15 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=49.2
Q ss_pred cEEEEECcccHHHHHHHHHHH-cCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~-~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|+|+| .|.||+++.+.|. .+ .+++.+. ++... ..... .+ +.. ..++ ++.+.++|+|.+++|-...
T Consensus 146 ktvGIiG-~G~IG~~va~~l~~~f-gm~V~~~-~~~~~-~~~~~---~~-~~~---~~~l-~ell~~sDvv~lh~plt~~ 213 (323)
T PRK15409 146 KTLGIVG-MGRIGMALAQRAHFGF-NMPILYN-ARRHH-KEAEE---RF-NAR---YCDL-DTLLQESDFVCIILPLTDE 213 (323)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhcC-CCEEEEE-CCCCc-hhhHH---hc-CcE---ecCH-HHHHHhCCEEEEeCCCChH
Confidence 5799999 9999999999987 66 4676543 33211 10000 00 000 1122 2335789999999995443
Q ss_pred ------HHHHhhCCCCCEEEEc
Q 015441 143 ------QEIIKGLPKSLKIVDL 158 (406)
Q Consensus 143 ------~~~~~~l~~G~~VIDl 158 (406)
++....++.|..+|..
T Consensus 214 T~~li~~~~l~~mk~ga~lIN~ 235 (323)
T PRK15409 214 THHLFGAEQFAKMKSSAIFINA 235 (323)
T ss_pred HhhccCHHHHhcCCCCeEEEEC
Confidence 3333445678888843
No 221
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.12 E-value=0.23 Score=44.24 Aligned_cols=95 Identities=20% Similarity=0.410 Sum_probs=51.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccC---ccccCCCc-c-cccC-cccCCCCCEEEEcC
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPH---LISQDLPT-M-VAVK-DADFSNVDAVFCCL 137 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~---l~~~~~~~-~-~~~~-~~~~~~vDvVF~al 137 (406)
||+|+| .|-.|..+...|..+. .++... +++. .-..+...+.+ +.+..++. + ...| ++.+.++|++++++
T Consensus 1 KI~ViG-aG~~G~AlA~~la~~g-~~V~l~-~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIG-AGNWGTALAALLADNG-HEVTLW-GRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV 77 (157)
T ss_dssp EEEEES-SSHHHHHHHHHHHHCT-EEEEEE-TSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S
T ss_pred CEEEEC-cCHHHHHHHHHHHHcC-CEEEEE-eccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecc
Confidence 799999 9999999999999765 455444 3332 10111111110 11111111 1 1112 22357899999999
Q ss_pred CCcchHHHHhhC----CCCCEEEEcCCcc
Q 015441 138 PHGTTQEIIKGL----PKSLKIVDLSADF 162 (406)
Q Consensus 138 ~~~~s~~~~~~l----~~G~~VIDlSa~f 162 (406)
|...-+++++.+ ..+..+|-++.-|
T Consensus 78 Ps~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 988777777553 4677888777666
No 222
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.09 E-value=0.48 Score=50.74 Aligned_cols=84 Identities=14% Similarity=0.269 Sum_probs=49.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+++.+.|..+ .+++.++. +......... + + .. ...+ ++.+.++|+|++|+|....
T Consensus 141 ktvgIiG-~G~IG~~vA~~l~~f-G~~V~~~d-~~~~~~~~~~----~-g--~~-~~~l-~ell~~aDiV~l~lP~t~~t 208 (526)
T PRK13581 141 KTLGIIG-LGRIGSEVAKRAKAF-GMKVIAYD-PYISPERAAQ----L-G--VE-LVSL-DELLARADFITLHTPLTPET 208 (526)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEC-CCCChhHHHh----c-C--CE-EEcH-HHHHhhCCEEEEccCCChHh
Confidence 5799999 999999999999866 35766553 2111000000 0 1 10 1112 2335689999999996533
Q ss_pred -----HHHHhhCCCCCEEEEcC
Q 015441 143 -----QEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlS 159 (406)
.+....++.|..+|+.|
T Consensus 209 ~~li~~~~l~~mk~ga~lIN~a 230 (526)
T PRK13581 209 RGLIGAEELAKMKPGVRIINCA 230 (526)
T ss_pred hcCcCHHHHhcCCCCeEEEECC
Confidence 33333445677777654
No 223
>PLN02686 cinnamoyl-CoA reductase
Probab=91.07 E-value=0.18 Score=51.19 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=28.1
Q ss_pred ccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 59 ~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
...++.+|.|.||+|++|+.|++.|.++ ..+++.+.
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~-G~~V~~~~ 84 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRH-GYSVRIAV 84 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEe
Confidence 3344568999999999999999999865 35666554
No 224
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=90.98 E-value=0.42 Score=46.25 Aligned_cols=93 Identities=15% Similarity=0.225 Sum_probs=52.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCC---ceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPY---FGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~---~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
+||+|+| .|..|+.+++.|.+... .++.. .+++. .+ .. . . ...+ ..+...++|+||+|++..
T Consensus 4 mkI~iIG-~G~mG~ai~~~l~~~~~~~~~~i~~-~~~~~-~~-~~-----~---~--~~~~-~~~~~~~~D~Vilavkp~ 68 (260)
T PTZ00431 4 IRVGFIG-LGKMGSALAYGIENSNIIGKENIYY-HTPSK-KN-TP-----F---V--YLQS-NEELAKTCDIIVLAVKPD 68 (260)
T ss_pred CEEEEEC-ccHHHHHHHHHHHhCCCCCcceEEE-ECCCh-hc-CC-----e---E--EeCC-hHHHHHhCCEEEEEeCHH
Confidence 4899999 99999999999886432 13433 33221 11 10 0 0 0101 011235789999999988
Q ss_pred chHHHHhhC----CCCCEEEEcCCcccCCCccchhhhcC
Q 015441 141 TTQEIIKGL----PKSLKIVDLSADFRLRDVSEYEEWYG 175 (406)
Q Consensus 141 ~s~~~~~~l----~~G~~VIDlSa~fRl~~~~~~~~~y~ 175 (406)
...++++.+ ..+..|-|.++ .. .+..++|.+
T Consensus 69 ~~~~vl~~i~~~l~~~~iIS~~aG-i~---~~~l~~~~~ 103 (260)
T PTZ00431 69 LAGKVLLEIKPYLGSKLLISICGG-LN---LKTLEEMVG 103 (260)
T ss_pred HHHHHHHHHHhhccCCEEEEEeCC-cc---HHHHHHHcC
Confidence 877777553 23344445555 32 334455543
No 225
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.97 E-value=0.72 Score=45.63 Aligned_cols=72 Identities=14% Similarity=0.307 Sum_probs=50.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc--c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--T 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~--~ 141 (406)
.+|.|+|+++.+|+-|..+|.+. ...++...++. .++ .+...++|+||.|+|.. +
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~-gatVtv~~s~t---------------~~l-------~~~~~~ADIVIsAvg~p~~i 215 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQK-NASVTILHSRS---------------KDM-------ASYLKDADVIVSAVGKPGLV 215 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHC-CCeEEEEeCCc---------------hhH-------HHHHhhCCEEEECCCCCccc
Confidence 58999999999999999999865 35555554321 011 11235789999999864 2
Q ss_pred hHHHHhhCCCCCEEEEcCCc
Q 015441 142 TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~ 161 (406)
..+ .++.|..|||.+..
T Consensus 216 ~~~---~vk~gavVIDvGi~ 232 (286)
T PRK14175 216 TKD---VVKEGAVIIDVGNT 232 (286)
T ss_pred CHH---HcCCCcEEEEcCCC
Confidence 232 25678999999875
No 226
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=90.93 E-value=0.28 Score=48.33 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=26.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEecc
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD 97 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~ 97 (406)
||.|.|++|++|.+|.++|. +..+++++...
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~ 32 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRA 32 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCc
Confidence 59999999999999999987 77888887643
No 227
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.89 E-value=0.45 Score=47.61 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=41.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccC--cCCccccccc--cCccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADR--KAGQSIGSVF--PHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~--~~G~~i~~v~--p~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
.||+|+|| |.||..+.-+|...+.. |++.+--.. ..|...+-.+ +.+ . .. .+..-+.+++.++|+|+++.+
T Consensus 7 ~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~-~~-~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 7 NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-S-PT-KIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-C-Ce-EEEeCCHHHhCCCCEEEEecC
Confidence 58999997 99999999999877766 565553211 1232222111 111 0 11 111112345678999988876
Q ss_pred C
Q 015441 139 H 139 (406)
Q Consensus 139 ~ 139 (406)
.
T Consensus 83 ~ 83 (315)
T PRK00066 83 A 83 (315)
T ss_pred C
Confidence 4
No 228
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.83 E-value=0.51 Score=47.24 Aligned_cols=75 Identities=16% Similarity=0.293 Sum_probs=41.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC--cCCccccccccC-ccccCCCcccc-cCcccCCCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR--KAGQSIGSVFPH-LISQDLPTMVA-VKDADFSNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~--~~G~~i~~v~p~-l~~~~~~~~~~-~~~~~~~~vDvVF~al~ 138 (406)
..||+|+|| |.+|..+..+|..+...+++.+--.. ..|..++..+.. +.+... .+.. .+.+++.++|+|+++.+
T Consensus 5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~-~i~~~~d~~~l~~ADiVVitag 82 (319)
T PTZ00117 5 RKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNI-NILGTNNYEDIKDSDVVVITAG 82 (319)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCe-EEEeCCCHHHhCCCCEEEECCC
Confidence 469999996 99999999988866545655543221 123333221110 001011 1111 12235678999999885
Q ss_pred C
Q 015441 139 H 139 (406)
Q Consensus 139 ~ 139 (406)
.
T Consensus 83 ~ 83 (319)
T PTZ00117 83 V 83 (319)
T ss_pred C
Confidence 3
No 229
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=90.78 E-value=0.38 Score=49.99 Aligned_cols=91 Identities=15% Similarity=0.261 Sum_probs=51.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|+|+| +|-+|+.+++.|.....-++. +.+++..- ..+...+ .. ........ .+.+.++|+||.|++....
T Consensus 183 ~~vlViG-aG~iG~~~a~~L~~~G~~~V~-v~~r~~~ra~~la~~~---g~-~~~~~~~~-~~~l~~aDvVI~aT~s~~~ 255 (423)
T PRK00045 183 KKVLVIG-AGEMGELVAKHLAEKGVRKIT-VANRTLERAEELAEEF---GG-EAIPLDEL-PEALAEADIVISSTGAPHP 255 (423)
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCCCeEE-EEeCCHHHHHHHHHHc---CC-cEeeHHHH-HHHhccCCEEEECCCCCCc
Confidence 5899999 699999999999865433444 44433211 1111111 11 11011111 1224578999999985443
Q ss_pred ---HHHHhh-C-C---CCCEEEEcCCc
Q 015441 143 ---QEIIKG-L-P---KSLKIVDLSAD 161 (406)
Q Consensus 143 ---~~~~~~-l-~---~G~~VIDlSa~ 161 (406)
.++++. + . .+..+||++-+
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAVP 282 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCCC
Confidence 445543 2 1 24689999864
No 230
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.64 E-value=1.8 Score=43.19 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=50.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|+|+|.+|.+|+-+..+|.+. ..++....++.. ++ .+...++|+||.|+|..
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~-gatVtv~~~~t~---------------~l-------~e~~~~ADIVIsavg~~--- 213 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQA-HCSVTVVHSRST---------------DA-------KALCRQADIVVAAVGRP--- 213 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-CCEEEEECCCCC---------------CH-------HHHHhcCCEEEEecCCh---
Confidence 58999998899999999999865 355555533211 11 11225789999999865
Q ss_pred HHHhh--CCCCCEEEEcCCcc
Q 015441 144 EIIKG--LPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~~--l~~G~~VIDlSa~f 162 (406)
+.++. +..|..|||.|-.+
T Consensus 214 ~~v~~~~ik~GaiVIDvgin~ 234 (301)
T PRK14194 214 RLIDADWLKPGAVVIDVGINR 234 (301)
T ss_pred hcccHhhccCCcEEEEecccc
Confidence 23322 46799999998654
No 231
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.63 E-value=0.35 Score=45.91 Aligned_cols=93 Identities=18% Similarity=0.240 Sum_probs=53.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEecc---------------CcCCc--------cccccccCccccCCCccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQ--------SIGSVFPHLISQDLPTMV 120 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~---------------~~~G~--------~i~~v~p~l~~~~~~~~~ 120 (406)
.||+|+| .|-+|.++++.|.....-++..+-.+ .+.|+ .+....|+.....++ .
T Consensus 22 ~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~--~ 98 (228)
T cd00757 22 ARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN--E 98 (228)
T ss_pred CcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec--c
Confidence 5899999 78889999999986544444444211 12332 122223322111111 0
Q ss_pred ccC----cccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEEcC
Q 015441 121 AVK----DADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDLS 159 (406)
Q Consensus 121 ~~~----~~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VIDlS 159 (406)
.++ .+.+.++|+||.|++...++.++.. + ..++.+|+.+
T Consensus 99 ~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 99 RLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred eeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 111 1224689999999998877665543 2 5678888753
No 232
>PRK06141 ornithine cyclodeaminase; Validated
Probab=90.57 E-value=0.3 Score=48.68 Aligned_cols=93 Identities=15% Similarity=0.260 Sum_probs=50.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
..+|+|+| +|..|+..++.+.. ++..++. +.+++.. .+.+...+... +......... .+...++|+|++|++..
T Consensus 125 ~~~v~iiG-~G~~a~~~~~al~~~~~~~~V~-V~~Rs~~~a~~~a~~~~~~-g~~~~~~~~~-~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 125 ASRLLVVG-TGRLASLLALAHASVRPIKQVR-VWGRDPAKAEALAAELRAQ-GFDAEVVTDL-EAAVRQADIISCATLST 200 (314)
T ss_pred CceEEEEC-CcHHHHHHHHHHHhcCCCCEEE-EEcCCHHHHHHHHHHHHhc-CCceEEeCCH-HHHHhcCCEEEEeeCCC
Confidence 35899999 89999999986654 6644454 4444321 11111111000 1011111111 22346899999999866
Q ss_pred chHHHH--hhCCCCCEEEEcCCcc
Q 015441 141 TTQEII--KGLPKSLKIVDLSADF 162 (406)
Q Consensus 141 ~s~~~~--~~l~~G~~VIDlSa~f 162 (406)
. .+. ..+..|. +||..+.+
T Consensus 201 ~--pvl~~~~l~~g~-~i~~ig~~ 221 (314)
T PRK06141 201 E--PLVRGEWLKPGT-HLDLVGNF 221 (314)
T ss_pred C--CEecHHHcCCCC-EEEeeCCC
Confidence 2 222 2356677 67777754
No 233
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=90.45 E-value=0.67 Score=46.42 Aligned_cols=166 Identities=13% Similarity=0.113 Sum_probs=84.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc-ch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG-TT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~-~s 142 (406)
.+|+|+| .|..|+.+++.|.++- ++++....+.. +...... .. + +. .... .+...++|+||+|+|.. ..
T Consensus 4 kkIgiIG-~G~mG~AiA~~L~~sG-~~Viv~~~~~~--~~~~~a~-~~-G--v~-~~s~-~ea~~~ADiVvLaVpp~~~~ 73 (314)
T TIGR00465 4 KTVAIIG-YGSQGHAQALNLRDSG-LNVIVGLRKGG--ASWKKAT-ED-G--FK-VGTV-EEAIPQADLIMNLLPDEVQH 73 (314)
T ss_pred CEEEEEe-EcHHHHHHHHHHHHCC-CeEEEEECcCh--hhHHHHH-HC-C--CE-ECCH-HHHHhcCCEEEEeCCcHhHH
Confidence 4799999 9999999999998653 35433332221 1111110 00 1 11 1111 22346799999999987 33
Q ss_pred HHHHh----hCCCCCEEEEcCCcccCCCccchhhhcC----CCCCCccchhhhhccccccchhhccC----CcEE-ecCC
Q 015441 143 QEIIK----GLPKSLKIVDLSADFRLRDVSEYEEWYG----QPHIAPDLQKEAVYGLTEISREDIKN----ARLV-ANPG 209 (406)
Q Consensus 143 ~~~~~----~l~~G~~VIDlSa~fRl~~~~~~~~~y~----~~~~~Pevn~~~vyglpE~~~~~i~~----~~iV-anPg 209 (406)
..+.+ .+..|. +|..++-|.++.. +.|.+ +-.+.|......+ |+.+.+ ..++ .+++
T Consensus 74 ~~v~~ei~~~l~~g~-iVs~aaG~~i~~~---~~~~~~~~~VvrvmPn~p~~~v-------r~~~~~G~G~~~l~a~~~~ 142 (314)
T TIGR00465 74 EVYEAEIQPLLKEGK-TLGFSHGFNIHFV---QIVPPKDVDVVMVAPKGPGTLV-------REEYKEGFGVPTLIAVEQD 142 (314)
T ss_pred HHHHHHHHhhCCCCc-EEEEeCCccHhhc---cccCCCCCcEEEECCCCCcHHH-------HHHhhcCCCeeEEEEecCC
Confidence 33332 234454 7778877766542 22322 1123343322211 222221 1344 6777
Q ss_pred ChHHHHHHHHHHHHHccCC-----------CcceEEEEEeeccCccCcchhh
Q 015441 210 CYPTSIQLPLVPLIQANLI-----------QYRNIIIDAKSGVSGAGRGAKE 250 (406)
Q Consensus 210 C~tta~~l~L~PL~~~~l~-----------~i~~i~v~t~~gvSGaG~~~~~ 250 (406)
++..+..+++.-+..-|.. .++.=.++...+.||+|-.-+.
T Consensus 143 ~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~ 194 (314)
T TIGR00465 143 PTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIK 194 (314)
T ss_pred CCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHH
Confidence 8777766666554433321 1111124555677887765444
No 234
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=90.33 E-value=0.32 Score=50.54 Aligned_cols=91 Identities=14% Similarity=0.198 Sum_probs=51.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|+|+| +|-+|+.+++.|..+...+++.+ +++.. ...+... +....++ ...+ .+.+.++|+||.|++....
T Consensus 181 ~~VlViG-aG~iG~~~a~~L~~~G~~~V~v~-~rs~~ra~~la~~---~g~~~i~-~~~l-~~~l~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 181 KKALLIG-AGEMGELVAKHLLRKGVGKILIA-NRTYERAEDLAKE---LGGEAVK-FEDL-EEYLAEADIVISSTGAPHP 253 (417)
T ss_pred CEEEEEC-ChHHHHHHHHHHHHCCCCEEEEE-eCCHHHHHHHHHH---cCCeEee-HHHH-HHHHhhCCEEEECCCCCCc
Confidence 5899999 59999999999987654455544 33211 1111111 1111111 1111 1234689999999875533
Q ss_pred ---HHHHhhC-C---CCCEEEEcCCc
Q 015441 143 ---QEIIKGL-P---KSLKIVDLSAD 161 (406)
Q Consensus 143 ---~~~~~~l-~---~G~~VIDlSa~ 161 (406)
.+..+.. . ....+||++-+
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~P 279 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVP 279 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCC
Confidence 4555432 2 23589999854
No 235
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.32 E-value=0.89 Score=45.76 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=48.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| +|.||+++.+.|..+ .+++.+...... +...... .... ...+ ++.+..+|++.+.+|-...
T Consensus 143 kTvGIiG-~G~IG~~va~~l~af-gm~v~~~d~~~~--~~~~~~~---~~~~---~~~L-d~lL~~sDiv~lh~PlT~eT 211 (324)
T COG0111 143 KTVGIIG-LGRIGRAVAKRLKAF-GMKVIGYDPYSP--RERAGVD---GVVG---VDSL-DELLAEADILTLHLPLTPET 211 (324)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhC-CCeEEEECCCCc--hhhhccc---ccee---cccH-HHHHhhCCEEEEcCCCCcch
Confidence 5799999 999999999999876 467766643111 1111100 0000 1122 2345789999999994433
Q ss_pred HHHH-----hhCCCCCEEE
Q 015441 143 QEII-----KGLPKSLKIV 156 (406)
Q Consensus 143 ~~~~-----~~l~~G~~VI 156 (406)
+.+. .+++.|..+|
T Consensus 212 ~g~i~~~~~a~MK~gailI 230 (324)
T COG0111 212 RGLINAEELAKMKPGAILI 230 (324)
T ss_pred hcccCHHHHhhCCCCeEEE
Confidence 2222 3345688777
No 236
>PRK05865 hypothetical protein; Provisional
Probab=90.23 E-value=0.7 Score=52.26 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=25.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+||.|.||||++|+.|++.|..+. .+++.+.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G-~~Vv~l~ 31 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG-HEVVGIA 31 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEE
Confidence 379999999999999999998654 4666664
No 237
>PRK08291 ectoine utilization protein EutC; Validated
Probab=90.23 E-value=0.41 Score=48.10 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=51.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|+|+| +|..|+..+..|.....++-+.+.+++.. .+.+.+.+....+..+....++ ++.+.++|+|+.|++...
T Consensus 133 ~~v~IiG-aG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~-~~al~~aDiVi~aT~s~~- 209 (330)
T PRK08291 133 SRAAVIG-AGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDV-HEAVAGADIIVTTTPSEE- 209 (330)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCH-HHHHccCCEEEEeeCCCC-
Confidence 5899999 78889998888875333555566655421 1111110000001111001111 223467999999998753
Q ss_pred HHHHh--hCCCCCEEEEcCCcc
Q 015441 143 QEIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 143 ~~~~~--~l~~G~~VIDlSa~f 162 (406)
.+.+ .++.|..|+...++.
T Consensus 210 -p~i~~~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 210 -PILKAEWLHPGLHVTAMGSDA 230 (330)
T ss_pred -cEecHHHcCCCceEEeeCCCC
Confidence 2222 356788887766653
No 238
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.20 E-value=0.53 Score=41.00 Aligned_cols=93 Identities=22% Similarity=0.306 Sum_probs=52.6
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEecc---------------CcCCc--------cccccccCccccCCCcccc
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQ--------SIGSVFPHLISQDLPTMVA 121 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~---------------~~~G~--------~i~~v~p~l~~~~~~~~~~ 121 (406)
||.|+| .|-+|.++++.|.....-++..+-.+ .+.|+ .+...+|+......+ ..
T Consensus 1 ~VliiG-~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~--~~ 77 (143)
T cd01483 1 RVLLVG-LGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVP--EG 77 (143)
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEe--ee
Confidence 589999 58899999999986544455444222 22232 122222222111110 01
Q ss_pred cC----cccCCCCCEEEEcCCCcchHHHHh-hC-CCCCEEEEcCC
Q 015441 122 VK----DADFSNVDAVFCCLPHGTTQEIIK-GL-PKSLKIVDLSA 160 (406)
Q Consensus 122 ~~----~~~~~~vDvVF~al~~~~s~~~~~-~l-~~G~~VIDlSa 160 (406)
++ .+.+.+.|+||+|.....++.... .+ +.++.+||.+.
T Consensus 78 ~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 78 ISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred cChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 11 123468999999999866655443 33 46888887654
No 239
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=90.17 E-value=0.77 Score=47.29 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=23.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|||+|+| +||+|..+..+++. ..+++.+-
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA~--G~~VigvD 29 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIAQ--NHEVVALD 29 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHHh--CCcEEEEE
Confidence 3899999 99999999987774 35666664
No 240
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=90.05 E-value=0.41 Score=44.15 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=23.5
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
|.|+||||++|+.|++.|..... +++.+..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~-~v~~~~~ 30 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH-EVIVLSR 30 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT-EEEEEES
T ss_pred EEEEccCCHHHHHHHHHHHHcCC-ccccccc
Confidence 78999999999999999986543 3445543
No 241
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.00 E-value=0.19 Score=45.28 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=52.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccC---------ccccCC--------Ccccc--cCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPH---------LISQDL--------PTMVA--VKD 124 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~---------l~~~~~--------~~~~~--~~~ 124 (406)
.||.|+| +|.+|+.-++++..++. +++.+-.....-+.....+.. ....+. +.... + .
T Consensus 21 ~~vvv~G-~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~ 97 (168)
T PF01262_consen 21 AKVVVTG-AGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF-A 97 (168)
T ss_dssp -EEEEES-TSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH-H
T ss_pred eEEEEEC-CCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH-H
Confidence 7899999 99999999999998864 555553221100001111000 000000 00000 0 1
Q ss_pred ccCCCCCEEEEc-------CCCcchHHHHhhCCCCCEEEEcCCcc
Q 015441 125 ADFSNVDAVFCC-------LPHGTTQEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 125 ~~~~~vDvVF~a-------l~~~~s~~~~~~l~~G~~VIDlSa~f 162 (406)
+.+..+|+|+.+ .|.-++++.++.+.+|..|+|+|.|.
T Consensus 98 ~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~ 142 (168)
T PF01262_consen 98 EFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQ 142 (168)
T ss_dssp HHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGG
T ss_pred HHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecC
Confidence 112467998864 45667777888888999999999874
No 242
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.99 E-value=0.8 Score=45.53 Aligned_cols=73 Identities=15% Similarity=0.318 Sum_probs=50.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|+|+|.+|.+|+-+.++|.+. ..+++...++.. + . .+....+|+||+|++...
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~-g~tVtv~~~rT~---------------~---l----~e~~~~ADIVIsavg~~~-- 213 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAA-NATVTIAHSRTR---------------D---L----PAVCRRADILVAAVGRPE-- 213 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhC-CCEEEEECCCCC---------------C---H----HHHHhcCCEEEEecCChh--
Confidence 58999999999999999999854 355554433221 1 1 112257899999998753
Q ss_pred HHHhh--CCCCCEEEEcCCcc
Q 015441 144 EIIKG--LPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~~--l~~G~~VIDlSa~f 162 (406)
+.+. +..|..|||.+-.+
T Consensus 214 -~v~~~~lk~GavVIDvGin~ 233 (296)
T PRK14188 214 -MVKGDWIKPGATVIDVGINR 233 (296)
T ss_pred -hcchheecCCCEEEEcCCcc
Confidence 3332 46799999997653
No 243
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.75 E-value=0.36 Score=47.10 Aligned_cols=100 Identities=14% Similarity=0.303 Sum_probs=52.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-C--Cc-cccccccCccccC-CC---------ccc-ccCcccCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-A--GQ-SIGSVFPHLISQD-LP---------TMV-AVKDADFS 128 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~--G~-~i~~v~p~l~~~~-~~---------~~~-~~~~~~~~ 128 (406)
.||+|+| .|++|..+...|+.+. .+++.+..+.. . ++ .+......+.... +. .+. ..+.++..
T Consensus 4 ~kI~VIG-~G~mG~~ia~~la~~g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 81 (282)
T PRK05808 4 QKIGVIG-AGTMGNGIAQVCAVAG-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK 81 (282)
T ss_pred cEEEEEc-cCHHHHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 4899999 7999999999998764 36655531111 0 00 0000000000000 00 011 11122357
Q ss_pred CCCEEEEcCCCcch--HHHHhh----CCCCCEEEEcCCcccCC
Q 015441 129 NVDAVFCCLPHGTT--QEIIKG----LPKSLKIVDLSADFRLR 165 (406)
Q Consensus 129 ~vDvVF~al~~~~s--~~~~~~----l~~G~~VIDlSa~fRl~ 165 (406)
++|+||.|.+.... +++.+. +..++.|+.+++.....
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~ 124 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT 124 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH
Confidence 89999999986555 344433 34567776666665443
No 244
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=89.74 E-value=2.6 Score=33.50 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH 86 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h 86 (406)
.+++|+|+ |.+|+-+++.|.+.
T Consensus 24 ~~v~i~G~-G~~g~~~a~~l~~~ 45 (86)
T cd05191 24 KTVVVLGA-GEVGKGIAKLLADE 45 (86)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc
Confidence 57999995 99999999998865
No 245
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=89.68 E-value=0.75 Score=51.05 Aligned_cols=91 Identities=13% Similarity=0.194 Sum_probs=52.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC-CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.||+|+| .|.+|+.+++.|...- ..++..+ +++. .+ ..... .+ +.......+. .+...++|+||+|+|....
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~~~V~~~-d~~~-~~-~~~a~-~~-g~~~~~~~~~-~~~~~~aDvVilavp~~~~ 76 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLAREVVAV-DRRA-KS-LELAV-SL-GVIDRGEEDL-AEAVSGADVIVLAVPVLAM 76 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCCCEEEEE-ECCh-hH-HHHHH-HC-CCCCcccCCH-HHHhcCCCEEEECCCHHHH
Confidence 5899999 9999999999998543 2344443 3322 11 11100 00 1000000111 1224688999999998766
Q ss_pred HHHHhh----CCCCCEEEEcCCc
Q 015441 143 QEIIKG----LPKSLKIVDLSAD 161 (406)
Q Consensus 143 ~~~~~~----l~~G~~VIDlSa~ 161 (406)
.+.++. +..++.|+|+++-
T Consensus 77 ~~vl~~l~~~~~~~~ii~d~~sv 99 (735)
T PRK14806 77 EKVLADLKPLLSEHAIVTDVGST 99 (735)
T ss_pred HHHHHHHHHhcCCCcEEEEcCCC
Confidence 665543 3457788898873
No 246
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=89.68 E-value=0.68 Score=48.99 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=26.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC-CceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~ 95 (406)
|+||+|+| .||+|..+.-.|+++. .++++.+-
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gvD 33 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVVD 33 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 46899999 9999999999998753 56777764
No 247
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.66 E-value=0.38 Score=47.11 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=22.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
.||+|+| .|.+|..+...|... ..++..+
T Consensus 2 ~~V~VIG-~G~mG~~iA~~la~~-G~~V~~~ 30 (288)
T PRK09260 2 EKLVVVG-AGVMGRGIAYVFAVS-GFQTTLV 30 (288)
T ss_pred cEEEEEC-ccHHHHHHHHHHHhC-CCcEEEE
Confidence 4799999 799999999998864 2455544
No 248
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=89.56 E-value=0.63 Score=43.24 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=23.6
Q ss_pred EEEEECcccHHHHHHHHHHHcC-CCceEEE
Q 015441 65 RIGLLGASGYTGAEIVRLLANH-PYFGIKL 93 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~h-p~~elv~ 93 (406)
+|.|.||+|.+|+++++.|.+. +...+..
T Consensus 2 ~vlItGas~gIG~~ia~~l~~~~~~~~v~~ 31 (235)
T PRK09009 2 NILIVGGSGGIGKAMVKQLLERYPDATVHA 31 (235)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCCEEEE
Confidence 7999999999999999998864 4455543
No 249
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=89.48 E-value=0.73 Score=48.73 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=52.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccC--cccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVK--DADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~--~~~~~~vDvVF~al~~~ 140 (406)
|.+|+|+| .|..|..|.+.|.++. +++....-..+.-+.+...... .+..+.....+. ...+.+.|+||+|++++
T Consensus 1 ~~~IgvIG-LG~MG~~lA~nL~~~G-~~V~v~dr~~~~~~~l~~~~~~-~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~ 77 (470)
T PTZ00142 1 MSDIGLIG-LAVMGQNLALNIASRG-FKISVYNRTYEKTEEFVKKAKE-GNTRVKGYHTLEELVNSLKKPRKVILLIKAG 77 (470)
T ss_pred CCEEEEEe-EhHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHhhhh-cCCcceecCCHHHHHhcCCCCCEEEEEeCCh
Confidence 35899999 9999999999998764 3555443221111111110000 010010011110 01123579999887766
Q ss_pred ch-HHH----HhhCCCCCEEEEcCCcc
Q 015441 141 TT-QEI----IKGLPKSLKIVDLSADF 162 (406)
Q Consensus 141 ~s-~~~----~~~l~~G~~VIDlSa~f 162 (406)
.. .+. .+.+..|..|||.|..+
T Consensus 78 ~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 78 EAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 44 333 34457789999998764
No 250
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.46 E-value=0.56 Score=47.30 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=52.7
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccc---cCcc-ccCCCc-ccc-cC-cccCCCCCEE
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF---PHLI-SQDLPT-MVA-VK-DADFSNVDAV 133 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~---p~l~-~~~~~~-~~~-~~-~~~~~~vDvV 133 (406)
..++||+|+| +|..|..+...|.+.-. ++.+..+...-+.+.+.+ +.+. +..++. +.. .+ .+...++|+|
T Consensus 5 ~~~mkI~IiG-aGa~G~alA~~La~~g~--v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlV 81 (341)
T PRK12439 5 KREPKVVVLG-GGSWGTTVASICARRGP--TLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVV 81 (341)
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEE
Confidence 3457999999 89999999999986542 333332111000111000 0111 111110 111 11 1224688999
Q ss_pred EEcCCCcchHHHHhh----CCCCCEEEEcCCcc
Q 015441 134 FCCLPHGTTQEIIKG----LPKSLKIVDLSADF 162 (406)
Q Consensus 134 F~al~~~~s~~~~~~----l~~G~~VIDlSa~f 162 (406)
|+|+|+....+.++. +..+..||.+..-+
T Consensus 82 ilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 82 VMGVPSHGFRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred EEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 999998777666554 33455677665433
No 251
>PRK06179 short chain dehydrogenase; Provisional
Probab=89.40 E-value=0.73 Score=43.88 Aligned_cols=31 Identities=19% Similarity=0.053 Sum_probs=25.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||||.+|+++++.|.++ ..+++.+.
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~-g~~V~~~~ 35 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARA-GYRVFGTS 35 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 46999999999999999999876 35665554
No 252
>PLN00016 RNA-binding protein; Provisional
Probab=89.39 E-value=0.41 Score=48.60 Aligned_cols=36 Identities=14% Similarity=0.324 Sum_probs=29.0
Q ss_pred cCCccEEEEE----CcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 60 SEKQVRIGLL----GASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 60 ~~~~ikVaIv----GATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
..++.||.|+ ||||++|+.|++.|.+.. .+++.+..
T Consensus 49 ~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R 88 (378)
T PLN00016 49 AVEKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTR 88 (378)
T ss_pred ccccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEec
Confidence 3455789999 999999999999998653 57777763
No 253
>PLN02572 UDP-sulfoquinovose synthase
Probab=89.29 E-value=0.57 Score=48.96 Aligned_cols=34 Identities=18% Similarity=0.455 Sum_probs=27.3
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
-++++|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d 78 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRG-YEVAIVD 78 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEe
Confidence 345689999999999999999998653 5676653
No 254
>PRK08219 short chain dehydrogenase; Provisional
Probab=89.28 E-value=0.49 Score=43.44 Aligned_cols=31 Identities=32% Similarity=0.222 Sum_probs=26.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|+++.|.||+|++|+.+++.|.++ .+++.+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~ 33 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT--HTLLLGG 33 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh--CCEEEEe
Confidence 468999999999999999999876 5666664
No 255
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.27 E-value=0.36 Score=45.01 Aligned_cols=93 Identities=18% Similarity=0.237 Sum_probs=54.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEecc---------------CcCCc--------cccccccCccccCCCccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQ--------SIGSVFPHLISQDLPTMV 120 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~---------------~~~G~--------~i~~v~p~l~~~~~~~~~ 120 (406)
.||.|+| .|-+|.++++.|.....-++..+-.+ ...|+ ++....|.......+ .
T Consensus 22 ~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~--~ 98 (202)
T TIGR02356 22 SHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK--E 98 (202)
T ss_pred CCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh--h
Confidence 5899999 78889999999986554455554322 11221 222223322111110 0
Q ss_pred ccCc----ccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEEcC
Q 015441 121 AVKD----ADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDLS 159 (406)
Q Consensus 121 ~~~~----~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VIDlS 159 (406)
.+++ +.+.++|+||.|+++..++.+... + ..++.+|+.+
T Consensus 99 ~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 99 RVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAA 143 (202)
T ss_pred cCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 1111 225689999999998777666643 2 5678888644
No 256
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=89.27 E-value=1.2 Score=43.44 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=51.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCc-ccc-CCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHL-ISQ-DLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l-~~~-~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
+||+|+| +|.+|..+...|.... .++..+..+...-..+....-.+ .+. ..+.....+..+..++|+||+|++...
T Consensus 1 m~I~IiG-~G~~G~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~~~ 78 (304)
T PRK06522 1 MKIAILG-AGAIGGLFGAALAQAG-HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKAYQ 78 (304)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCC-CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEeccccc
Confidence 4799999 7999999999998643 35655543111101111000000 010 000000011122367899999999876
Q ss_pred hHHHHhhC----CCCCEEEEcCCc
Q 015441 142 TQEIIKGL----PKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~l----~~G~~VIDlSa~ 161 (406)
..+.++.+ ..+..||.+..-
T Consensus 79 ~~~~~~~l~~~l~~~~~iv~~~nG 102 (304)
T PRK06522 79 LPAALPSLAPLLGPDTPVLFLQNG 102 (304)
T ss_pred HHHHHHHHhhhcCCCCEEEEecCC
Confidence 66666543 345677766553
No 257
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.25 E-value=1.1 Score=44.29 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=47.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|++|.+|+-+..+|.+.-. ++....+ +. .++ .+.+.++|+|+.|+|...
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~-~t--------------~~L-------~~~~~~aDIvI~AtG~~~-- 214 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANA-TVTICHS-RT--------------QNL-------PELVKQADIIVGAVGKPE-- 214 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC-Cc--------------hhH-------HHHhccCCEEEEccCCCC--
Confidence 4899999999999999999986543 5544432 10 011 112357899999997332
Q ss_pred HHH--hhCCCCCEEEEcCC
Q 015441 144 EII--KGLPKSLKIVDLSA 160 (406)
Q Consensus 144 ~~~--~~l~~G~~VIDlSa 160 (406)
.. ..+..|..|||..-
T Consensus 215 -~v~~~~lk~gavViDvg~ 232 (283)
T PRK14192 215 -LIKKDWIKQGAVVVDAGF 232 (283)
T ss_pred -cCCHHHcCCCCEEEEEEE
Confidence 22 23577999999764
No 258
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=89.22 E-value=0.78 Score=44.86 Aligned_cols=90 Identities=17% Similarity=0.256 Sum_probs=51.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccC-cccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVK-DADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~-~~~~~~vDvVF~al~~~~ 141 (406)
.+|.|+|+ |-+|+.+++.|..+...++..+ +|+. ..+.+...+.... ... + ..+ ...+.++|+|+.|+|.+.
T Consensus 124 k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~-~R~~~~a~~l~~~~~~~~--~~~-~-~~~~~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 124 KRILILGA-GGAARAVILPLLDLGVAEITIV-NRTVERAEELAKLFGALG--KAE-L-DLELQEELADFDLIINATSAGM 197 (278)
T ss_pred CEEEEEcC-cHHHHHHHHHHHHcCCCEEEEE-eCCHHHHHHHHHHhhhcc--cee-e-cccchhccccCCEEEECCcCCC
Confidence 47999995 9999999999987664555544 3332 1112221111110 011 1 111 123467899999999876
Q ss_pred hHH-----HH-hhCCCCCEEEEcC
Q 015441 142 TQE-----II-KGLPKSLKIVDLS 159 (406)
Q Consensus 142 s~~-----~~-~~l~~G~~VIDlS 159 (406)
... +. ..+..+..|+|+.
T Consensus 198 ~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 198 SGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEee
Confidence 421 11 2245567788874
No 259
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=89.20 E-value=0.58 Score=46.59 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=22.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP 87 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp 87 (406)
|.||.|.||||++|+.|++.|.+..
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g 25 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINET 25 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcC
Confidence 4589999999999999999998654
No 260
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=89.16 E-value=0.89 Score=48.37 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=55.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccc-cCCCcccccCccc----CCCCCEEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLIS-QDLPTMVAVKDAD----FSNVDAVFC 135 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~-~~~~~~~~~~~~~----~~~vDvVF~ 135 (406)
.+.+|++|| .|..|..+.+-|+++. +++.... +.. .-..+.+.... .+ ..+.... +..+ +.++|+||+
T Consensus 5 ~~~~IG~IG-LG~MG~~mA~nL~~~G-~~V~V~N-Rt~~k~~~l~~~~~~-~Ga~~~~~a~--s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 5 ALSRIGLAG-LAVMGQNLALNIAEKG-FPISVYN-RTTSKVDETVERAKK-EGNLPLYGFK--DPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCCEEEEe-eHHHHHHHHHHHHhCC-CeEEEEC-CCHHHHHHHHHhhhh-cCCcccccCC--CHHHHHhcCCCCCEEEE
Confidence 345899999 9999999999998764 5665553 321 11111110000 01 0000011 1122 235999999
Q ss_pred cCCCcchHH-----HHhhCCCCCEEEEcCCcc
Q 015441 136 CLPHGTTQE-----IIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 136 al~~~~s~~-----~~~~l~~G~~VIDlSa~f 162 (406)
|++.+...+ +.+.+..|..|||.|..+
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 999887643 224456799999998864
No 261
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=89.11 E-value=1.4 Score=38.93 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=49.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..+|+.|..+|.+. ..++....++. .++ .+...++|+|+++++..
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~-gatV~~~~~~t---------------~~l-------~~~v~~ADIVvsAtg~~--- 82 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRD-GATVYSCDWKT---------------IQL-------QSKVHDADVVVVGSPKP--- 82 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCEEEEeCCCC---------------cCH-------HHHHhhCCEEEEecCCC---
Confidence 58999999999999999999864 34444443211 011 11235799999999865
Q ss_pred HHHh--hCCCCCEEEEcCCc
Q 015441 144 EIIK--GLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~ 161 (406)
.+.+ .++.|..|||.+-.
T Consensus 83 ~~i~~~~ikpGa~Vidvg~~ 102 (140)
T cd05212 83 EKVPTEWIKPGATVINCSPT 102 (140)
T ss_pred CccCHHHcCCCCEEEEcCCC
Confidence 3332 36789999987654
No 262
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=89.10 E-value=0.44 Score=46.71 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=23.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
+||.|.||+|++|+.|++.|.+.. +++.+
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g--~V~~~ 29 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG--NLIAL 29 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC--CEEEe
Confidence 379999999999999999988655 45444
No 263
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=89.10 E-value=0.45 Score=52.15 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=27.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC-CCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH-PYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~ 95 (406)
.+||.|.||||++|+.|++.|.+. +..+++.+.
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d 39 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLD 39 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEe
Confidence 368999999999999999988864 567777664
No 264
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=89.08 E-value=0.76 Score=44.65 Aligned_cols=91 Identities=13% Similarity=0.277 Sum_probs=50.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.++.|+|+ |-+|+.++..|.... .++..+ +++.. .+.+....... + ... ....++....++|+|+.|+|.+..
T Consensus 118 k~vliiGa-Gg~g~aia~~L~~~g-~~v~v~-~R~~~~~~~la~~~~~~-~-~~~-~~~~~~~~~~~~DivInatp~gm~ 191 (270)
T TIGR00507 118 QRVLIIGA-GGAARAVALPLLKAD-CNVIIA-NRTVSKAEELAERFQRY-G-EIQ-AFSMDELPLHRVDLIINATSAGMS 191 (270)
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCC-CEEEEE-eCCHHHHHHHHHHHhhc-C-ceE-EechhhhcccCccEEEECCCCCCC
Confidence 47999996 899999999998765 465544 33211 11111111000 0 000 111111223478999999998643
Q ss_pred HHH------HhhCCCCCEEEEcCC
Q 015441 143 QEI------IKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 ~~~------~~~l~~G~~VIDlSa 160 (406)
... ...+..+..|+|++.
T Consensus 192 ~~~~~~~~~~~~l~~~~~v~D~~y 215 (270)
T TIGR00507 192 GNIDEPPVPAEKLKEGMVVYDMVY 215 (270)
T ss_pred CCCCCCCCCHHHcCCCCEEEEecc
Confidence 221 122456788999864
No 265
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=88.99 E-value=1.1 Score=42.69 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=29.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD 97 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~ 97 (406)
+.+||+|.| +|-||+.++++|.++ ..+++++++.
T Consensus 30 ~~~~v~I~G-~G~VG~~~a~~L~~~-g~~vv~v~D~ 63 (227)
T cd01076 30 AGARVAIQG-FGNVGSHAARFLHEA-GAKVVAVSDS 63 (227)
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECC
Confidence 347999999 999999999999876 6889888764
No 266
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=88.89 E-value=0.29 Score=42.32 Aligned_cols=93 Identities=18% Similarity=0.352 Sum_probs=51.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC---------------cCCc--------cccccccCccccCCCccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR---------------KAGQ--------SIGSVFPHLISQDLPTMV 120 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~---------------~~G~--------~i~~v~p~l~~~~~~~~~ 120 (406)
.||+|+| .|-+|.++++.|.....-++..+-.+. +.|+ .+.+..|......++ .
T Consensus 3 ~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~--~ 79 (135)
T PF00899_consen 3 KRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIP--E 79 (135)
T ss_dssp -EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEE--S
T ss_pred CEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeee--c
Confidence 5899999 888999999999865545565553221 1121 111122221111100 0
Q ss_pred ccC----cccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEEcC
Q 015441 121 AVK----DADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDLS 159 (406)
Q Consensus 121 ~~~----~~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VIDlS 159 (406)
.++ .+.+.++|+||+|+.+..++..+.. + +.+.++|+.+
T Consensus 80 ~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 80 KIDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp HCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred ccccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 111 1123588999999988666655543 3 5678888644
No 267
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=88.87 E-value=0.64 Score=46.23 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=41.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc--CCccccccccCccccCCCcccc-cCcccCCCCCEEEEcCCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIGSVFPHLISQDLPTMVA-VKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~--~G~~i~~v~p~l~~~~~~~~~~-~~~~~~~~vDvVF~al~~ 139 (406)
+||+|+| +|++|..+.-.|+.+...+++.+--... .|+.++..++.........+.. .+-+++.++|+||.|.+.
T Consensus 2 ~KV~VIG-aG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDiVIitag~ 79 (305)
T TIGR01763 2 KKISVIG-AGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAGL 79 (305)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCEEEEcCCC
Confidence 4899999 5999999999998754446544432111 2232222222211100001111 122235789999999884
No 268
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=88.76 E-value=0.9 Score=43.60 Aligned_cols=94 Identities=17% Similarity=0.296 Sum_probs=53.2
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEecc---------------CcCCcc--------ccccccCccccCCC-cc-
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQS--------IGSVFPHLISQDLP-TM- 119 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~---------------~~~G~~--------i~~v~p~l~~~~~~-~~- 119 (406)
||.|+| .|-+|.++++.|.....-++..+-.+ .+.|+. +.+..|........ .+
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 589999 77789999999975444444443211 123321 22223322111000 01
Q ss_pred --cccCcccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEEcC
Q 015441 120 --VAVKDADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDLS 159 (406)
Q Consensus 120 --~~~~~~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VIDlS 159 (406)
...+++.+.+.|+|+.|+....++.++.. + ..++.+||.+
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g 123 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESG 123 (234)
T ss_pred hhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 11112234789999999999888777654 2 5678888743
No 269
>PRK06153 hypothetical protein; Provisional
Probab=88.65 E-value=0.51 Score=48.55 Aligned_cols=100 Identities=22% Similarity=0.427 Sum_probs=58.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEecc--------C--------cCCc---cccccccCcc--ccCCCcc-cc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD--------R--------KAGQ---SIGSVFPHLI--SQDLPTM-VA 121 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~--------~--------~~G~---~i~~v~p~l~--~~~~~~~-~~ 121 (406)
.||+|+| -|=+|..+++.|+..+.-+++.+-.+ | ..|+ +++.....+. ..++... ..
T Consensus 177 ~~VaIVG-~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~~~~ 255 (393)
T PRK06153 177 QRIAIIG-LGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPHPEY 255 (393)
T ss_pred CcEEEEc-CCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEEeec
Confidence 5899999 66679999999998777777766322 1 1222 1100000000 0011000 11
Q ss_pred cCcc---cCCCCCEEEEcCCCcchHHHHh-hC-CCCCEEEEcCCcccC
Q 015441 122 VKDA---DFSNVDAVFCCLPHGTTQEIIK-GL-PKSLKIVDLSADFRL 164 (406)
Q Consensus 122 ~~~~---~~~~vDvVF~al~~~~s~~~~~-~l-~~G~~VIDlSa~fRl 164 (406)
++++ .+.++|+||.|++...++.++- .+ +.++..||.+-....
T Consensus 256 I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~l~~ 303 (393)
T PRK06153 256 IDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMGLEL 303 (393)
T ss_pred CCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeeccee
Confidence 2211 3568999999999998877664 33 568888887655433
No 270
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=88.63 E-value=0.5 Score=49.16 Aligned_cols=92 Identities=16% Similarity=0.167 Sum_probs=50.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.||.|+| +|-+|+.+++.|..+..-++. +++|.. ..+.+...++. . ....+.++ .+.+.++|+||.|++...-
T Consensus 182 kkvlviG-aG~~a~~va~~L~~~g~~~I~-V~nRt~~ra~~La~~~~~--~-~~~~~~~l-~~~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 182 KNVLIIG-AGQTGELLFRHVTALAPKQIM-LANRTIEKAQKITSAFRN--A-SAHYLSEL-PQLIKKADIIIAAVNVLEY 255 (414)
T ss_pred CEEEEEc-CcHHHHHHHHHHHHcCCCEEE-EECCCHHHHHHHHHHhcC--C-eEecHHHH-HHHhccCCEEEECcCCCCe
Confidence 5799999 688899999999877544554 444432 12222221110 1 11011111 2235689999999985432
Q ss_pred HHHHhhC-CCCCEEEEcCCc
Q 015441 143 QEIIKGL-PKSLKIVDLSAD 161 (406)
Q Consensus 143 ~~~~~~l-~~G~~VIDlSa~ 161 (406)
---.... .+...+||++=+
T Consensus 256 vi~~~~~~~~~~~~iDLavP 275 (414)
T PRK13940 256 IVTCKYVGDKPRVFIDISIP 275 (414)
T ss_pred eECHHHhCCCCeEEEEeCCC
Confidence 1101112 224578999765
No 271
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.57 E-value=0.42 Score=46.93 Aligned_cols=30 Identities=27% Similarity=0.550 Sum_probs=24.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.||+|+| .|.+|..+++.|+.+- .+++.+.
T Consensus 5 ~~V~vIG-~G~mG~~iA~~l~~~G-~~V~~~d 34 (295)
T PLN02545 5 KKVGVVG-AGQMGSGIAQLAAAAG-MDVWLLD 34 (295)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcC-CeEEEEe
Confidence 5799999 8999999999998653 5665553
No 272
>PLN02700 homoserine dehydrogenase family protein
Probab=88.54 E-value=0.58 Score=48.05 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=26.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC--------CCceEEEEecc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH--------PYFGIKLMTAD 97 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h--------p~~elv~l~s~ 97 (406)
+++|+|+| .|-||+.|+++|.+. -++++++++++
T Consensus 3 ~i~i~liG-~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 3 KIPVLLLG-CGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred EEEEEEEe-cChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 48999999 999999999998742 12456677653
No 273
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.45 E-value=0.85 Score=45.00 Aligned_cols=31 Identities=23% Similarity=0.480 Sum_probs=24.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.||+|+| .|.+|..+...|.... .+++.+.
T Consensus 4 ~~~I~vIG-aG~mG~~iA~~l~~~g-~~V~~~d 34 (311)
T PRK06130 4 IQNLAIIG-AGTMGSGIAALFARKG-LQVVLID 34 (311)
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhCC-CeEEEEE
Confidence 45899999 7999999999998643 4665553
No 274
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.39 E-value=0.94 Score=45.44 Aligned_cols=74 Identities=18% Similarity=0.272 Sum_probs=40.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc---CCccccccccC-ccccCCCcccc-cCcccCCCCCEEEEcC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPH-LISQDLPTMVA-VKDADFSNVDAVFCCL 137 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~---~G~~i~~v~p~-l~~~~~~~~~~-~~~~~~~~vDvVF~al 137 (406)
+.||+|+| .|.+|..+...+......+++.+ +... .|+.++..+.. +.+... .+.. .+-+++.++|+|+.+.
T Consensus 6 ~~KI~IIG-aG~vG~~ia~~la~~gl~~i~Lv-Di~~~~~~~~~ld~~~~~~~~~~~~-~I~~~~d~~~l~~aDiVI~ta 82 (321)
T PTZ00082 6 RRKISLIG-SGNIGGVMAYLIVLKNLGDVVLF-DIVKNIPQGKALDISHSNVIAGSNS-KVIGTNNYEDIAGSDVVIVTA 82 (321)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEE-eCCCchhhHHHHHHHhhhhccCCCe-EEEECCCHHHhCCCCEEEECC
Confidence 35899999 69999999998876554565444 4221 23233222210 001011 1221 2224567889998887
Q ss_pred CC
Q 015441 138 PH 139 (406)
Q Consensus 138 ~~ 139 (406)
+.
T Consensus 83 g~ 84 (321)
T PTZ00082 83 GL 84 (321)
T ss_pred CC
Confidence 54
No 275
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=88.38 E-value=0.48 Score=45.74 Aligned_cols=31 Identities=29% Similarity=0.591 Sum_probs=25.6
Q ss_pred EEEEECcccHHHHHHHHHHHcC-CCceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANH-PYFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~h-p~~elv~l~ 95 (406)
||.|.||||++|+.|++.|... +..+++.+.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 5899999999999999988764 456777664
No 276
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=88.36 E-value=0.97 Score=45.49 Aligned_cols=98 Identities=20% Similarity=0.370 Sum_probs=55.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccc--cc-CccccCCCc-cc-ccC-cccCCCCCEEEEc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSV--FP-HLISQDLPT-MV-AVK-DADFSNVDAVFCC 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v--~p-~l~~~~~~~-~~-~~~-~~~~~~vDvVF~a 136 (406)
++||+|+| .|-.|..|...|.++- .+++...-+...-..+... .+ -|++..++. +. ..| .+..+++|+++++
T Consensus 1 ~~kI~ViG-aGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~a 78 (329)
T COG0240 1 MMKIAVIG-AGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIA 78 (329)
T ss_pred CceEEEEc-CChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEE
Confidence 46899999 8999999999999653 2333333221111111111 11 122222221 11 111 1223579999999
Q ss_pred CCCcchHHHHhhC----CCCCEEEEcCCcc
Q 015441 137 LPHGTTQEIIKGL----PKSLKIVDLSADF 162 (406)
Q Consensus 137 l~~~~s~~~~~~l----~~G~~VIDlSa~f 162 (406)
.|+..-+++++.+ ..+.++|-++--|
T Consensus 79 vPs~~~r~v~~~l~~~l~~~~~iv~~sKGi 108 (329)
T COG0240 79 VPSQALREVLRQLKPLLLKDAIIVSATKGL 108 (329)
T ss_pred CChHHHHHHHHHHhhhccCCCeEEEEeccc
Confidence 9998888877654 4567777665444
No 277
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=88.20 E-value=0.74 Score=51.96 Aligned_cols=94 Identities=11% Similarity=0.137 Sum_probs=51.4
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcC--------CCceEEEEeccCcC-----CccccccccCccc-cCCCcccccCccc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANH--------PYFGIKLMTADRKA-----GQSIGSVFPHLIS-QDLPTMVAVKDAD 126 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~h--------p~~elv~l~s~~~~-----G~~i~~v~p~l~~-~~~~~~~~~~~~~ 126 (406)
.++++|+|+| .|-||+.++++|.+. -+++++.+++++.. |-........+.. ........+ .+.
T Consensus 463 ~~~~~i~l~G-~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~ 540 (819)
T PRK09436 463 DQVLDVFVIG-VGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRL-IRL 540 (819)
T ss_pred cccccEEEEe-cCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHH-HHH
Confidence 3678999999 999999999999742 14566777643221 1111000000000 000000000 000
Q ss_pred C----CCCCEEEEcCCCcchHH-HHhhCCCCCEEE
Q 015441 127 F----SNVDAVFCCLPHGTTQE-IIKGLPKSLKIV 156 (406)
Q Consensus 127 ~----~~vDvVF~al~~~~s~~-~~~~l~~G~~VI 156 (406)
. -..|+++.|++...... +..++++|+.||
T Consensus 541 ~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VV 575 (819)
T PRK09436 541 VKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVV 575 (819)
T ss_pred HhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEE
Confidence 1 14589999999754433 444578999999
No 278
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=88.13 E-value=1 Score=40.72 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=43.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.++.+|+-|..+|.++ +..+...-+.. .++ .+....+|+|+.|.|..
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~-~atVt~~h~~T---------------~~l-------~~~~~~ADIVVsa~G~~--- 90 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNK-GATVTICHSKT---------------KNL-------QEITRRADIVVSAVGKP--- 90 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHT-T-EEEEE-TTS---------------SSH-------HHHHTTSSEEEE-SSST---
T ss_pred CEEEEECCcCCCChHHHHHHHhC-CCeEEeccCCC---------------Ccc-------cceeeeccEEeeeeccc---
Confidence 58999999999999999999876 34443332211 011 11125789999999753
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
.+.+ .++.|+.|||.+-.+
T Consensus 91 ~~i~~~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 91 NLIKADWIKPGAVVIDVGINY 111 (160)
T ss_dssp T-B-GGGS-TTEEEEE--CEE
T ss_pred cccccccccCCcEEEecCCcc
Confidence 3333 257799999988754
No 279
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.09 E-value=1.6 Score=45.38 Aligned_cols=82 Identities=12% Similarity=0.183 Sum_probs=50.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+++++.+..+ .+++.+.. +.. .... .+ .....++ ++.+..+|+|.+++|....
T Consensus 152 ktvGIiG-~G~IG~~vA~~~~~f-Gm~V~~~d-~~~-~~~~-------~~--~~~~~~l-~ell~~sDiVslh~Plt~~T 217 (409)
T PRK11790 152 KTLGIVG-YGHIGTQLSVLAESL-GMRVYFYD-IED-KLPL-------GN--ARQVGSL-EELLAQSDVVSLHVPETPST 217 (409)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEC-CCc-cccc-------CC--ceecCCH-HHHHhhCCEEEEcCCCChHH
Confidence 5799999 999999999999876 46776654 211 0000 00 0001122 2345789999999995443
Q ss_pred -----HHHHhhCCCCCEEEEcC
Q 015441 143 -----QEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlS 159 (406)
++....++.|..+|..+
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~a 239 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINAS 239 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECC
Confidence 22333346788888554
No 280
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.02 E-value=1.2 Score=45.09 Aligned_cols=93 Identities=18% Similarity=0.298 Sum_probs=58.4
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCC--CceEEEEeccCcCCccccccccC-cc-ccCCCcccccCcccCCCCCEEEE
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHP--YFGIKLMTADRKAGQSIGSVFPH-LI-SQDLPTMVAVKDADFSNVDAVFC 135 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp--~~elv~l~s~~~~G~~i~~v~p~-l~-~~~~~~~~~~~~~~~~~vDvVF~ 135 (406)
.++.+|+||+| -|.+++.+++.|..-| +.+++++++++ ......+.-.+ +. .+-..-++++-.+ ..+|+|+.
T Consensus 3 ~s~~ir~Gi~g-~g~ia~~f~~al~~~p~s~~~Ivava~~s-~~~A~~fAq~~~~~~~k~y~syEeLakd--~~vDvVyi 78 (351)
T KOG2741|consen 3 DSATIRWGIVG-AGRIARDFVRALHTLPESNHQIVAVADPS-LERAKEFAQRHNIPNPKAYGSYEELAKD--PEVDVVYI 78 (351)
T ss_pred CCceeEEEEee-hhHHHHHHHHHhccCcccCcEEEEEeccc-HHHHHHHHHhcCCCCCccccCHHHHhcC--CCcCEEEe
Confidence 35568999999 8999999999998877 78899999863 21111111000 00 0011112221111 47899999
Q ss_pred cCCCcchHHHHhh-CCCCCEEE
Q 015441 136 CLPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 136 al~~~~s~~~~~~-l~~G~~VI 156 (406)
.+++..=.+++.. +.+|+.|.
T Consensus 79 ~~~~~qH~evv~l~l~~~K~VL 100 (351)
T KOG2741|consen 79 STPNPQHYEVVMLALNKGKHVL 100 (351)
T ss_pred CCCCccHHHHHHHHHHcCCcEE
Confidence 9998877777754 56676654
No 281
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=88.01 E-value=0.85 Score=47.34 Aligned_cols=93 Identities=18% Similarity=0.300 Sum_probs=53.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
+..||.|+| .|-+|+-+++.|.++...++..+ .|.. ..+.+..- +.+..++ +.++ ...+.++|+||+||+..
T Consensus 177 ~~~~vlvIG-AGem~~lva~~L~~~g~~~i~Ia-NRT~erA~~La~~---~~~~~~~-l~el-~~~l~~~DvVissTsa~ 249 (414)
T COG0373 177 KDKKVLVIG-AGEMGELVAKHLAEKGVKKITIA-NRTLERAEELAKK---LGAEAVA-LEEL-LEALAEADVVISSTSAP 249 (414)
T ss_pred ccCeEEEEc-ccHHHHHHHHHHHhCCCCEEEEE-cCCHHHHHHHHHH---hCCeeec-HHHH-HHhhhhCCEEEEecCCC
Confidence 346899999 89999999999998876555444 4432 12222221 2221111 2222 22346899999998743
Q ss_pred ch---HHHHh-hCC--CCCEEEEcCCc
Q 015441 141 TT---QEIIK-GLP--KSLKIVDLSAD 161 (406)
Q Consensus 141 ~s---~~~~~-~l~--~G~~VIDlSa~ 161 (406)
.- .+..+ ++. +...+||++-+
T Consensus 250 ~~ii~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 250 HPIITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred ccccCHHHHHHHHhcccCeEEEEecCC
Confidence 22 33333 332 23478999875
No 282
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=87.93 E-value=0.62 Score=46.30 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=53.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
..+++|+| +|.-|+.-++.+..-..++-+.+.+++... ..+..-.....+.++...... ++...++|+|+.||+...
T Consensus 117 a~~l~iiG-aG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~-~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 117 VENFTIIG-SGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNA-EAALRDADTITSITNSDT 194 (301)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCH-HHHHhcCCEEEEecCCCC
Confidence 46899999 999999999988864456666666554211 111100000001111111111 233578999999998654
Q ss_pred hHHHHhhCCCCCEEEEcCCc
Q 015441 142 TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~ 161 (406)
--=-...++.|..|+-..++
T Consensus 195 P~~~~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 195 PIFNRKYLGDEYHVNLAGSN 214 (301)
T ss_pred cEecHHHcCCCceEEecCCC
Confidence 21111235668887755443
No 283
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=87.93 E-value=0.68 Score=47.06 Aligned_cols=37 Identities=19% Similarity=0.521 Sum_probs=32.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRK 99 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~ 99 (406)
|.|+.|+|+||-||.+-++++.+||+ +++++++..+.
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n 38 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKN 38 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCc
Confidence 46899999999999999999999986 58999986543
No 284
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=87.91 E-value=1.3 Score=44.56 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=48.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+++|+| +|.||+.+.+.+..+ .+++.+..-.+. ...... +... +.++ ++.+.++|++.+.+|-.-.
T Consensus 147 ktvGIiG-~GrIG~avA~r~~~F-gm~v~y~~~~~~--~~~~~~---~~~~----y~~l-~ell~~sDii~l~~Plt~~T 214 (324)
T COG1052 147 KTLGIIG-LGRIGQAVARRLKGF-GMKVLYYDRSPN--PEAEKE---LGAR----YVDL-DELLAESDIISLHCPLTPET 214 (324)
T ss_pred CEEEEEC-CCHHHHHHHHHHhcC-CCEEEEECCCCC--hHHHhh---cCce----eccH-HHHHHhCCEEEEeCCCChHH
Confidence 5799999 999999999999855 467766543221 111110 0000 1112 3345789999998884433
Q ss_pred -----HHHHhhCCCCCEEE
Q 015441 143 -----QEIIKGLPKSLKIV 156 (406)
Q Consensus 143 -----~~~~~~l~~G~~VI 156 (406)
++..+..+.|..+|
T Consensus 215 ~hLin~~~l~~mk~ga~lV 233 (324)
T COG1052 215 RHLINAEELAKMKPGAILV 233 (324)
T ss_pred hhhcCHHHHHhCCCCeEEE
Confidence 22333445677777
No 285
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=87.88 E-value=2 Score=42.48 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=53.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
+..||.|.|.||..|..+++-|...+-- +++-...+. | .++++ .-.-++.+.++ ++.. ++|+++.|.|...
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~-~--~~~v~---G~~~y~sv~dl-p~~~-~~Dlavi~vpa~~ 75 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGK-G--GTTVL---GLPVFDSVKEA-VEET-GANASVIFVPAPF 75 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCC-C--cceec---CeeccCCHHHH-hhcc-CCCEEEEecCHHH
Confidence 4468999999999999999988765433 444333221 0 11111 00111112222 1111 3799999999888
Q ss_pred hHHHHhhC-CCCC--EEEEcCCccc
Q 015441 142 TQEIIKGL-PKSL--KIVDLSADFR 163 (406)
Q Consensus 142 s~~~~~~l-~~G~--~VIDlSa~fR 163 (406)
..+.+..+ ++|+ .|| +|+-|.
T Consensus 76 v~~~l~e~~~~Gvk~avI-is~Gf~ 99 (286)
T TIGR01019 76 AADAIFEAIDAGIELIVC-ITEGIP 99 (286)
T ss_pred HHHHHHHHHHCCCCEEEE-ECCCCC
Confidence 87777654 6665 345 566563
No 286
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=87.76 E-value=0.36 Score=48.15 Aligned_cols=95 Identities=14% Similarity=0.216 Sum_probs=44.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
..+++|+| +|..++.-++.+.. +| ++-+.+.+++... ..+......+ +..+....+. ++...++|+|++||++.
T Consensus 128 ~~~l~viG-aG~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~~-~~~v~~~~~~-~~av~~aDii~taT~s~ 203 (313)
T PF02423_consen 128 ARTLGVIG-AGVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRDL-GVPVVAVDSA-EEAVRGADIIVTATPST 203 (313)
T ss_dssp --EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHCC-CTCEEEESSH-HHHHTTSSEEEE----S
T ss_pred CceEEEEC-CCHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhccc-cccceeccch-hhhcccCCEEEEccCCC
Confidence 35799999 99999999998875 77 6666666655321 1111101011 1111111111 23457999999999977
Q ss_pred chHHHH--hhCCCCCEEEEcCCc
Q 015441 141 TTQEII--KGLPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~--~~l~~G~~VIDlSa~ 161 (406)
....+. ..++.|..|+-.+++
T Consensus 204 ~~~P~~~~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 204 TPAPVFDAEWLKPGTHINAIGSY 226 (313)
T ss_dssp SEEESB-GGGS-TT-EEEE-S-S
T ss_pred CCCccccHHHcCCCcEEEEecCC
Confidence 621222 246778888766653
No 287
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.65 E-value=2.6 Score=43.09 Aligned_cols=99 Identities=18% Similarity=0.400 Sum_probs=55.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC------CceEEEEeccCc-CCcc----ccccc---cCccccCCCc-cccc-C-ccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP------YFGIKLMTADRK-AGQS----IGSVF---PHLISQDLPT-MVAV-K-DAD 126 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp------~~elv~l~s~~~-~G~~----i~~v~---p~l~~~~~~~-~~~~-~-~~~ 126 (406)
+||+|+| +|-.|..|...|.+.- ..++.....+.. .+++ +...+ ..+++..++. +... | .+.
T Consensus 12 ~ki~ViG-aG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 12 LKVSVIG-SGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CeEEEEC-CCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 6899999 8999999999998542 123333332221 1111 11000 0122222321 1111 1 123
Q ss_pred CCCCCEEEEcCCCcchHHHHhhCC------CCCEEEEcCCccc
Q 015441 127 FSNVDAVFCCLPHGTTQEIIKGLP------KSLKIVDLSADFR 163 (406)
Q Consensus 127 ~~~vDvVF~al~~~~s~~~~~~l~------~G~~VIDlSa~fR 163 (406)
..++|++++|.|+..-++.++.+. .+..||..+.-+-
T Consensus 91 v~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 91 VEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred HhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcc
Confidence 468999999999988877776542 2446777766553
No 288
>PRK08264 short chain dehydrogenase; Validated
Probab=87.55 E-value=1 Score=41.81 Aligned_cols=32 Identities=16% Similarity=0.050 Sum_probs=25.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||||.+|+++++.|+++..-+++.+.
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~ 38 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAA 38 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEe
Confidence 47999999999999999999876432454443
No 289
>PRK12829 short chain dehydrogenase; Provisional
Probab=87.52 E-value=0.52 Score=44.43 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=25.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|.+|+.+++.|.++. .+++.+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g-~~V~~~~ 42 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAG-ARVHVCD 42 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 589999999999999999998765 3665554
No 290
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=87.49 E-value=0.5 Score=47.53 Aligned_cols=95 Identities=21% Similarity=0.331 Sum_probs=57.3
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-----CccccccccCccccCCCcccccCcccCCCCCEEEE
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-----GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFC 135 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-----G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~ 135 (406)
++...+-|.|||||+|+-+++.|..+- ... ++++|+.. +..+..-++.|. +-+...+ .+..+++++|+-
T Consensus 4 e~e~d~iiYGAtGy~G~lvae~l~~~g-~~~-aLAgRs~~kl~~l~~~LG~~~~~~p---~~~p~~~-~~~~~~~~VVln 77 (382)
T COG3268 4 EREYDIIIYGATGYAGGLVAEYLAREG-LTA-ALAGRSSAKLDALRASLGPEAAVFP---LGVPAAL-EAMASRTQVVLN 77 (382)
T ss_pred CcceeEEEEccccchhHHHHHHHHHcC-Cch-hhccCCHHHHHHHHHhcCccccccC---CCCHHHH-HHHHhcceEEEe
Confidence 445679999999999999999998542 122 55554431 112222122221 1100111 223468999999
Q ss_pred cCCCcch--HHHHhhC-CCCCEEEEcCCc
Q 015441 136 CLPHGTT--QEIIKGL-PKSLKIVDLSAD 161 (406)
Q Consensus 136 al~~~~s--~~~~~~l-~~G~~VIDlSa~ 161 (406)
|.|+..- ..++++. .+|.--.|+++.
T Consensus 78 cvGPyt~~g~plv~aC~~~GTdY~DiTGE 106 (382)
T COG3268 78 CVGPYTRYGEPLVAACAAAGTDYADITGE 106 (382)
T ss_pred ccccccccccHHHHHHHHhCCCeeecccc
Confidence 9996543 4456664 678888899984
No 291
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=87.41 E-value=2.2 Score=40.37 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=28.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD 97 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~ 97 (406)
..+|+|.| .|-||+.+++.|.+. ...++++++.
T Consensus 23 g~~vaIqG-fGnVG~~~a~~L~~~-G~~vV~vsD~ 55 (217)
T cd05211 23 GLTVAVQG-LGNVGWGLAKKLAEE-GGKVLAVSDP 55 (217)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 46999999 999999999999876 4678888764
No 292
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.40 E-value=1.1 Score=44.26 Aligned_cols=73 Identities=15% Similarity=0.261 Sum_probs=49.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.++.||+-|..+|.+. ...+...-++ ..++ .+....+|+|+.|.|..
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~-~atVt~~hs~---------------t~~l-------~~~~~~ADIVV~avG~~--- 212 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQA-GATVTICHSK---------------TRDL-------AAHTRQADIVVAAVGKR--- 212 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-CCEEEEecCC---------------CCCH-------HHHhhhCCEEEEcCCCc---
Confidence 58999999999999999999854 3444433221 1111 12235789999999843
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
.+.. .+..|+.|||.+-.+
T Consensus 213 ~~i~~~~ik~gavVIDVGin~ 233 (285)
T PRK14189 213 NVLTADMVKPGATVIDVGMNR 233 (285)
T ss_pred CccCHHHcCCCCEEEEccccc
Confidence 3333 357899999987653
No 293
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=87.31 E-value=1.3 Score=46.96 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=24.3
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
+.+||+||| +|.+|..++..|+.+. +++...
T Consensus 3 ~i~kIavIG-~G~MG~~iA~~la~~G-~~V~v~ 33 (495)
T PRK07531 3 MIMKAACIG-GGVIGGGWAARFLLAG-IDVAVF 33 (495)
T ss_pred CcCEEEEEC-cCHHHHHHHHHHHhCC-CeEEEE
Confidence 345899999 9999999999998753 455544
No 294
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.27 E-value=0.93 Score=44.78 Aligned_cols=73 Identities=14% Similarity=0.245 Sum_probs=49.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|+|+|.+|.+|+-|..+|.+. ...++..-++. .++ .+...++|+|+.|+|....
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~-gatVtv~~s~t---------------~~l-------~~~~~~ADIVI~avg~~~~- 214 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDK-NATVTLTHSRT---------------RNL-------AEVARKADILVVAIGRGHF- 214 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHC-CCEEEEECCCC---------------CCH-------HHHHhhCCEEEEecCcccc-
Confidence 58999999999999999999864 34444331110 011 1123578999999986533
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
.+ .+..|..|||.+-.+
T Consensus 215 --v~~~~ik~GavVIDvgin~ 233 (284)
T PRK14179 215 --VTKEFVKEGAVVIDVGMNR 233 (284)
T ss_pred --CCHHHccCCcEEEEeccee
Confidence 22 257799999987653
No 295
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=87.23 E-value=1.5 Score=44.29 Aligned_cols=91 Identities=12% Similarity=0.224 Sum_probs=51.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|+||| .|.+|+.+++.|.... ++++....+........... + .... +. .+...++|+||+|+|.....
T Consensus 18 ktIgIIG-~GsmG~AlA~~L~~sG-~~Vvv~~r~~~~s~~~A~~~----G--~~~~-s~-~eaa~~ADVVvLaVPd~~~~ 87 (330)
T PRK05479 18 KKVAIIG-YGSQGHAHALNLRDSG-VDVVVGLREGSKSWKKAEAD----G--FEVL-TV-AEAAKWADVIMILLPDEVQA 87 (330)
T ss_pred CEEEEEe-eHHHHHHHHHHHHHCC-CEEEEEECCchhhHHHHHHC----C--CeeC-CH-HHHHhcCCEEEEcCCHHHHH
Confidence 5799999 9999999999987653 46544332211111111000 1 1101 11 22346799999999977665
Q ss_pred HHH-h----hCCCCCEEEEcCCcccCC
Q 015441 144 EII-K----GLPKSLKIVDLSADFRLR 165 (406)
Q Consensus 144 ~~~-~----~l~~G~~VIDlSa~fRl~ 165 (406)
++. + .+..|..|+ .++-|.+.
T Consensus 88 ~V~~~~I~~~Lk~g~iL~-~a~G~~i~ 113 (330)
T PRK05479 88 EVYEEEIEPNLKEGAALA-FAHGFNIH 113 (330)
T ss_pred HHHHHHHHhcCCCCCEEE-ECCCCChh
Confidence 554 3 234566654 44445443
No 296
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.22 E-value=0.91 Score=41.97 Aligned_cols=32 Identities=19% Similarity=0.023 Sum_probs=25.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.+|.|.||||.+|++|++.|.+... +++.+.
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~~ 37 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGA-DVVVHY 37 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEe
Confidence 35899999999999999999986543 554433
No 297
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=87.19 E-value=1.2 Score=47.19 Aligned_cols=94 Identities=14% Similarity=0.235 Sum_probs=52.0
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccC--cccCCCCCEEEEcCCCcch
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVK--DADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~--~~~~~~vDvVF~al~~~~s 142 (406)
+|+|+| .|..|+.|.+.|.++. +++.........-+.+...+. .+..+....... ...+.+.|+||+|++.+..
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~~G-~~V~v~drt~~~~~~l~~~~~--~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMADHG-FTVSVYNRTPEKTDEFLAEHA--KGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHhhcc--CCCCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 489999 9999999999998764 455554322111111111100 000010011110 1122468999999998543
Q ss_pred -HHHH----hhCCCCCEEEEcCCcc
Q 015441 143 -QEII----KGLPKSLKIVDLSADF 162 (406)
Q Consensus 143 -~~~~----~~l~~G~~VIDlSa~f 162 (406)
.+.+ +.+..|..|||.|..+
T Consensus 77 v~~Vi~~l~~~L~~g~iIID~gns~ 101 (467)
T TIGR00873 77 VDAVINQLLPLLEKGDIIIDGGNSH 101 (467)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCcC
Confidence 3333 3356788999998643
No 298
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=87.08 E-value=0.73 Score=45.84 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=23.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIK 92 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv 92 (406)
+||.|.||||++|+.|++.|.+.....++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~ 29 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVV 29 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEE
Confidence 37999999999999999999876543343
No 299
>PRK07340 ornithine cyclodeaminase; Validated
Probab=86.64 E-value=0.94 Score=45.03 Aligned_cols=91 Identities=14% Similarity=0.073 Sum_probs=51.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCcCC-ccccccccCccccCCCc-ccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPT-MVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~-~~~~~~~~~~~vDvVF~al~~ 139 (406)
..+|+|+| +|..|+..++.+.. ++. +-+.+.++.... +.+..- +....+.. .... ++...++|+|+.||+.
T Consensus 125 ~~~v~IiG-aG~qa~~~~~al~~~~~~-~~v~v~~r~~~~a~~~a~~---~~~~~~~~~~~~~-~~av~~aDiVitaT~s 198 (304)
T PRK07340 125 PGDLLLIG-TGVQARAHLEAFAAGLPV-RRVWVRGRTAASAAAFCAH---ARALGPTAEPLDG-EAIPEAVDLVVTATTS 198 (304)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHH---HHhcCCeeEECCH-HHHhhcCCEEEEccCC
Confidence 35899999 89999999998874 554 445555544211 111110 11001111 1111 2234689999999996
Q ss_pred cchHHHHh-hCCCCCEEEEcCCc
Q 015441 140 GTTQEIIK-GLPKSLKIVDLSAD 161 (406)
Q Consensus 140 ~~s~~~~~-~l~~G~~VIDlSa~ 161 (406)
.. .+.. .++.|..|+-.+++
T Consensus 199 ~~--Pl~~~~~~~g~hi~~iGs~ 219 (304)
T PRK07340 199 RT--PVYPEAARAGRLVVAVGAF 219 (304)
T ss_pred CC--ceeCccCCCCCEEEecCCC
Confidence 64 2222 35678877755553
No 300
>PRK05866 short chain dehydrogenase; Provisional
Probab=86.59 E-value=0.93 Score=44.32 Aligned_cols=31 Identities=26% Similarity=0.214 Sum_probs=25.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+++++.|.++. .+++.+.
T Consensus 41 k~vlItGasggIG~~la~~La~~G-~~Vi~~~ 71 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRG-ATVVAVA 71 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 579999999999999999998764 5665554
No 301
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=86.46 E-value=1.1 Score=44.46 Aligned_cols=72 Identities=15% Similarity=0.308 Sum_probs=40.1
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCcC--Ccccc--ccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKA--GQSIG--SVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~~--G~~i~--~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
||+|+| +|.+|+.++..|...... +++.+.-.... +...+ ..... ..... .+...+.+++.++|+|+.|++.
T Consensus 2 kI~IIG-aG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~-~~~~~-~i~~~~~~~l~~aDIVIitag~ 78 (306)
T cd05291 2 KVVIIG-AGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF-LPSPV-KIKAGDYSDCKDADIVVITAGA 78 (306)
T ss_pred EEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc-cCCCe-EEEcCCHHHhCCCCEEEEccCC
Confidence 799999 599999999999876654 66655422211 11111 00000 00010 0111223346789999999875
No 302
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=86.37 E-value=0.87 Score=42.38 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=22.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
.||+|+|+.| +|.++++.|...-.-+++.+
T Consensus 20 s~VlviG~gg-lGsevak~L~~~GVg~i~lv 49 (198)
T cd01485 20 AKVLIIGAGA-LGAEIAKNLVLAGIDSITIV 49 (198)
T ss_pred CcEEEECCCH-HHHHHHHHHHHcCCCEEEEE
Confidence 6899999766 99999999885433344444
No 303
>PLN02306 hydroxypyruvate reductase
Probab=86.29 E-value=2.2 Score=44.00 Aligned_cols=93 Identities=14% Similarity=0.223 Sum_probs=49.8
Q ss_pred cEEEEECcccHHHHHHHHHHH-cCCCceEEEEeccCcCC-cccccccc-Ccc---ccCC--CcccccCcccCCCCCEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADRKAG-QSIGSVFP-HLI---SQDL--PTMVAVKDADFSNVDAVFC 135 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~-~hp~~elv~l~s~~~~G-~~i~~v~p-~l~---~~~~--~~~~~~~~~~~~~vDvVF~ 135 (406)
.+|+|+| +|.||+++.+.|. .+ .+++.++....... ......++ .+. ..+. ....++ ++.+.++|+|.+
T Consensus 166 ktvGIiG-~G~IG~~vA~~l~~~f-Gm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L-~ell~~sDiV~l 242 (386)
T PLN02306 166 QTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSM-EEVLREADVISL 242 (386)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcC-CCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCH-HHHHhhCCEEEE
Confidence 5799999 9999999999985 55 56776553211110 00000010 000 0000 001112 233578999999
Q ss_pred cCCCcch-H-----HHHhhCCCCCEEEEcC
Q 015441 136 CLPHGTT-Q-----EIIKGLPKSLKIVDLS 159 (406)
Q Consensus 136 al~~~~s-~-----~~~~~l~~G~~VIDlS 159 (406)
++|.... . +....++.|..+|..+
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNAS 272 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECC
Confidence 9885432 2 2333456788888544
No 304
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=86.13 E-value=1.1 Score=43.18 Aligned_cols=92 Identities=21% Similarity=0.292 Sum_probs=52.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEecc---------------CcCCc--------cccccccCccccCCCccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQ--------SIGSVFPHLISQDLPTMV 120 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~---------------~~~G~--------~i~~v~p~l~~~~~~~~~ 120 (406)
.||+|+|+ |-+|.++++.|..-..-+++.+-.+ ...|+ .+.+..|......+. .
T Consensus 33 ~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~--~ 109 (245)
T PRK05690 33 ARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN--A 109 (245)
T ss_pred CeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe--c
Confidence 68999995 8889999999986444445444211 12232 122222222111110 0
Q ss_pred ccCc----ccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEEc
Q 015441 121 AVKD----ADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDL 158 (406)
Q Consensus 121 ~~~~----~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VIDl 158 (406)
.+++ +.+.++|+||.|+....++.++.. . ..++.+|+-
T Consensus 110 ~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 110 RLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred cCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEe
Confidence 1111 225789999999998877665543 2 567888853
No 305
>PRK06823 ornithine cyclodeaminase; Validated
Probab=85.98 E-value=1.3 Score=44.41 Aligned_cols=92 Identities=11% Similarity=0.150 Sum_probs=53.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCccccc-C-cccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAV-K-DADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~-~-~~~~~~vDvVF~al~~ 139 (406)
..+++|+| +|..++.-++.+..-..++-+.+.+++... +.+... +....++ +... + ++...++|+|++||+.
T Consensus 128 ~~~l~iiG-~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~---~~~~~~~-v~~~~~~~~av~~ADIV~taT~s 202 (315)
T PRK06823 128 VSAIGIVG-TGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQY---AQALGFA-VNTTLDAAEVAHAANLIVTTTPS 202 (315)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHH---HHhcCCc-EEEECCHHHHhcCCCEEEEecCC
Confidence 46899999 999999999988764445666666654321 111110 1111111 1111 1 2334789999999986
Q ss_pred cchHHHH--hhCCCCCEEEEcCCc
Q 015441 140 GTTQEII--KGLPKSLKIVDLSAD 161 (406)
Q Consensus 140 ~~s~~~~--~~l~~G~~VIDlSa~ 161 (406)
.. .+. ..++.|..|+-.+++
T Consensus 203 ~~--P~~~~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 203 RE--PLLQAEDIQPGTHITAVGAD 224 (315)
T ss_pred CC--ceeCHHHcCCCcEEEecCCC
Confidence 53 222 245678887755554
No 306
>PLN02240 UDP-glucose 4-epimerase
Probab=85.69 E-value=1.2 Score=44.27 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=26.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~ 36 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLLAG-YKVVVID 36 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 589999999999999999998654 4676664
No 307
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=85.55 E-value=1.7 Score=42.77 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=22.6
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|+|.|+||+||+.|...|.... -+++.++
T Consensus 1 IliTGgTGlIG~~L~~~L~~~g-h~v~ilt 29 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGG-HQVTILT 29 (297)
T ss_pred CeEeccccchhHHHHHHHHhCC-CeEEEEE
Confidence 5899999999999999997542 3555554
No 308
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=85.54 E-value=0.78 Score=51.71 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=52.0
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcC---------CCceEEEEeccCcC-----CccccccccCccc-cCCCccc----c
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANH---------PYFGIKLMTADRKA-----GQSIGSVFPHLIS-QDLPTMV----A 121 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~h---------p~~elv~l~s~~~~-----G~~i~~v~p~l~~-~~~~~~~----~ 121 (406)
.++++|+|+| .|-||+.++++|.++ -+++++.+++++.. |-.....-..+.. ....... .
T Consensus 456 ~~~i~i~l~G-~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e~ 534 (810)
T PRK09466 456 EKRIGLVLFG-KGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFLW 534 (810)
T ss_pred CceEEEEEEe-cCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHHH
Confidence 3568999999 999999999999742 24677888754321 1000000000000 0000000 0
Q ss_pred cCcccCCCCCEEEEcCCCcchHH-HHhhCCCCCEEE
Q 015441 122 VKDADFSNVDAVFCCLPHGTTQE-IIKGLPKSLKIV 156 (406)
Q Consensus 122 ~~~~~~~~vDvVF~al~~~~s~~-~~~~l~~G~~VI 156 (406)
+...+ .+.++++.|++...... +..++++|+.||
T Consensus 535 i~~~~-~~~~vvVd~t~~~~~~~~~~~aL~~G~~VV 569 (810)
T PRK09466 535 LRAHP-YDELVVLDVTASEQLALQYPDFASHGFHVI 569 (810)
T ss_pred HhhcC-CCCcEEEECCCChHHHHHHHHHHHcCCEEE
Confidence 00000 12469999998764443 445578999999
No 309
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.47 E-value=1.6 Score=43.13 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=50.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcC-CCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|.|+|.+..||+=|..+|.++ .+..+...-++. .++ .+...++|+|+.|.|..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T---------------~~l-------~~~~k~ADIvV~AvGkp-- 214 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT---------------RDL-------AAHTRRADIIVAAAGVA-- 214 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC---------------CCH-------HHHHHhCCEEEEecCCc--
Confidence 58999999999999999999864 345443332211 111 11235789999999864
Q ss_pred HHHHh--hCCCCCEEEEcCCcc
Q 015441 143 QEIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 143 ~~~~~--~l~~G~~VIDlSa~f 162 (406)
++.+ .+..|+.|||.+-.+
T Consensus 215 -~~i~~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 215 -HLVTADMVKPGAAVLDVGVSR 235 (284)
T ss_pred -CccCHHHcCCCCEEEEccccc
Confidence 2333 257799999987653
No 310
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=85.46 E-value=1.9 Score=40.27 Aligned_cols=83 Identities=12% Similarity=0.165 Sum_probs=47.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCc-ccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPT-MVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~-~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|.|+| .|-+|...++.|.+.. .+++.++ +. ....+....+. + .+.. -..+++.++.++|+||.|++....
T Consensus 11 k~vLVIG-gG~va~~ka~~Ll~~g-a~V~VIs-~~-~~~~l~~l~~~--~-~i~~~~~~~~~~~l~~adlViaaT~d~el 83 (202)
T PRK06718 11 KRVVIVG-GGKVAGRRAITLLKYG-AHIVVIS-PE-LTENLVKLVEE--G-KIRWKQKEFEPSDIVDAFLVIAATNDPRV 83 (202)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CeEEEEc-CC-CCHHHHHHHhC--C-CEEEEecCCChhhcCCceEEEEcCCCHHH
Confidence 5899999 7999999999888654 5666554 22 11111111110 0 0100 011224456789999999987765
Q ss_pred HHHH-hhCCCCC
Q 015441 143 QEII-KGLPKSL 153 (406)
Q Consensus 143 ~~~~-~~l~~G~ 153 (406)
-+.+ ....++.
T Consensus 84 N~~i~~~a~~~~ 95 (202)
T PRK06718 84 NEQVKEDLPENA 95 (202)
T ss_pred HHHHHHHHHhCC
Confidence 4433 3334454
No 311
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=85.29 E-value=1.1 Score=44.23 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=25.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+||.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC-CeEEEEe
Confidence 479999999999999999888653 4666653
No 312
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=84.96 E-value=2.8 Score=41.85 Aligned_cols=81 Identities=22% Similarity=0.308 Sum_probs=50.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC------cCCccccccccCccccCCCcccccCcccCCCCCEEEEcC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR------KAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~------~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
+||+|+| +|-+|.-+.-.|.+.. -.+..+...+ ..|..+.+....+ ..+.....+.+....+|+||.++
T Consensus 1 mkI~IlG-aGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~~---~~~~~~~~~~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILG-AGAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGGNF---TTPVVAATDAEALGPADLVIVTV 75 (307)
T ss_pred CeEEEEC-CcHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCCcc---ccccccccChhhcCCCCEEEEEe
Confidence 5899999 9999999999998877 4555554322 1244444322200 11112222234456899999999
Q ss_pred CCcchHHHHhhC
Q 015441 138 PHGTTQEIIKGL 149 (406)
Q Consensus 138 ~~~~s~~~~~~l 149 (406)
-.....+.++.+
T Consensus 76 Ka~q~~~al~~l 87 (307)
T COG1893 76 KAYQLEEALPSL 87 (307)
T ss_pred ccccHHHHHHHh
Confidence 887777777654
No 313
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=84.74 E-value=1.1 Score=47.95 Aligned_cols=95 Identities=17% Similarity=0.258 Sum_probs=53.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCc----cc--cccccCcc--c-------cCCC-ccc----ccC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ----SI--GSVFPHLI--S-------QDLP-TMV----AVK 123 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~----~i--~~v~p~l~--~-------~~~~-~~~----~~~ 123 (406)
-||+|+| .|.+|...++.+...- .+++.+. .+..-+ .+ ..+..... + ..+. .+. ..-
T Consensus 165 akVlViG-aG~iGl~Aa~~ak~lG-A~V~v~d-~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 165 AKVLVIG-AGVAGLAAIGAANSLG-AIVRAFD-TRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEe-CCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 5899999 7999999999888654 3444443 221100 00 00000000 0 0000 000 000
Q ss_pred cccCCCCCEEEEcC-----CC--cchHHHHhhCCCCCEEEEcCCc
Q 015441 124 DADFSNVDAVFCCL-----PH--GTTQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 124 ~~~~~~vDvVF~al-----~~--~~s~~~~~~l~~G~~VIDlSa~ 161 (406)
.+...++|+||.|. +. -++++..+..+.|.+|||++.+
T Consensus 242 ~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeC
Confidence 11235799999998 33 2667777777889999999886
No 314
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=84.72 E-value=3 Score=40.72 Aligned_cols=92 Identities=18% Similarity=0.232 Sum_probs=49.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC------cCCccccccccCccccCCCcccccCccc-CCCCCEEEEc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR------KAGQSIGSVFPHLISQDLPTMVAVKDAD-FSNVDAVFCC 136 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~------~~G~~i~~v~p~l~~~~~~~~~~~~~~~-~~~vDvVF~a 136 (406)
+||+|+| .|.+|..+...|.+.. .++..+.... ..|..+...... ...+.....+.++ ..++|++|+|
T Consensus 1 mkI~IiG-~G~iG~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~vila 75 (305)
T PRK12921 1 MRIAVVG-AGAVGGTFGGRLLEAG-RDVTFLVRPKRAKALRERGLVIRSDHGD---AVVPGPVITDPEELTGPFDLVILA 75 (305)
T ss_pred CeEEEEC-CCHHHHHHHHHHHHCC-CceEEEecHHHHHHHHhCCeEEEeCCCe---EEecceeecCHHHccCCCCEEEEE
Confidence 4899999 9999999999998653 3454444211 112111110000 0000000011112 2578999999
Q ss_pred CCCcchHHHHhhC----CCCCEEEEcCC
Q 015441 137 LPHGTTQEIIKGL----PKSLKIVDLSA 160 (406)
Q Consensus 137 l~~~~s~~~~~~l----~~G~~VIDlSa 160 (406)
++.....+.++.+ ..+..||.+..
T Consensus 76 vk~~~~~~~~~~l~~~~~~~~~ii~~~n 103 (305)
T PRK12921 76 VKAYQLDAAIPDLKPLVGEDTVIIPLQN 103 (305)
T ss_pred ecccCHHHHHHHHHhhcCCCCEEEEeeC
Confidence 9987666655443 34566776544
No 315
>PLN02583 cinnamoyl-CoA reductase
Probab=84.64 E-value=1.5 Score=42.82 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=25.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||||++|+.+++.|+++. .+++.+.
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~~ 37 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRG-YTVHAAV 37 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 479999999999999999998653 5676654
No 316
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=84.62 E-value=2.6 Score=42.77 Aligned_cols=98 Identities=19% Similarity=0.357 Sum_probs=53.7
Q ss_pred EEEEECcccHHHHHHHHHHHcCC-------CceEEEEeccCcC-Ccc----ccccc--cC-ccccCCCc-ccc-cC-ccc
Q 015441 65 RIGLLGASGYTGAEIVRLLANHP-------YFGIKLMTADRKA-GQS----IGSVF--PH-LISQDLPT-MVA-VK-DAD 126 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp-------~~elv~l~s~~~~-G~~----i~~v~--p~-l~~~~~~~-~~~-~~-~~~ 126 (406)
||+|+| +|-.|..|...|.+.- +.++....-+... +.. +...+ ++ +.+..++. +.. .+ .+.
T Consensus 1 kI~VIG-aG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVG-SGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 689999 8999999999998531 1344444321100 111 11111 11 12222221 111 11 122
Q ss_pred CCCCCEEEEcCCCcchHHHHhh----CCCCCEEEEcCCccc
Q 015441 127 FSNVDAVFCCLPHGTTQEIIKG----LPKSLKIVDLSADFR 163 (406)
Q Consensus 127 ~~~vDvVF~al~~~~s~~~~~~----l~~G~~VIDlSa~fR 163 (406)
..++|++|+|+|+..-++.++. +..+..+|.++--+-
T Consensus 80 l~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie 120 (342)
T TIGR03376 80 AKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLE 120 (342)
T ss_pred HhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcc
Confidence 4689999999998877776654 344667787766553
No 317
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=84.58 E-value=1.2 Score=44.06 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=26.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||||++|+.|++.|.+. ..+++.+.
T Consensus 7 ~~vlVTGatGfiG~~l~~~L~~~-G~~V~~~~ 37 (340)
T PLN02653 7 KVALITGITGQDGSYLTEFLLSK-GYEVHGII 37 (340)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-CCEEEEEe
Confidence 57999999999999999999875 35776664
No 318
>PLN02858 fructose-bisphosphate aldolase
Probab=84.57 E-value=1.4 Score=52.51 Aligned_cols=89 Identities=18% Similarity=0.167 Sum_probs=51.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
++.+|+++| .|.+|..+.+.|...- +++... +++. .-..+... + ....... .+...++|+||+|++..
T Consensus 323 ~~~~IGfIG-lG~MG~~mA~~L~~~G-~~V~v~-dr~~~~~~~l~~~-----G--a~~~~s~-~e~~~~aDvVi~~V~~~ 391 (1378)
T PLN02858 323 PVKRIGFIG-LGAMGFGMASHLLKSN-FSVCGY-DVYKPTLVRFENA-----G--GLAGNSP-AEVAKDVDVLVIMVANE 391 (1378)
T ss_pred CCCeEEEEC-chHHHHHHHHHHHHCC-CEEEEE-eCCHHHHHHHHHc-----C--CeecCCH-HHHHhcCCEEEEecCCh
Confidence 457899999 9999999999888653 455444 3221 11111110 1 0001111 12235799999999954
Q ss_pred ch-HHHH-------hhCCCCCEEEEcCCc
Q 015441 141 TT-QEII-------KGLPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s-~~~~-------~~l~~G~~VIDlSa~ 161 (406)
.. .+.. +.+..|..|||.|.-
T Consensus 392 ~~v~~Vl~g~~g~~~~l~~g~ivVd~STv 420 (1378)
T PLN02858 392 VQAENVLFGDLGAVSALPAGASIVLSSTV 420 (1378)
T ss_pred HHHHHHHhchhhHHhcCCCCCEEEECCCC
Confidence 43 3332 223568899999874
No 319
>PRK07806 short chain dehydrogenase; Provisional
Probab=84.48 E-value=1.3 Score=41.45 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=25.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|.+|+.+++.|.++. .+++.+.
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G-~~V~~~~ 37 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAG-AHVVVNY 37 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999999999999998653 4665553
No 320
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=84.40 E-value=1.4 Score=40.93 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=50.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEecc---------------CcCCc--------cccccccCccccCCC-cc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQ--------SIGSVFPHLISQDLP-TM 119 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~---------------~~~G~--------~i~~v~p~l~~~~~~-~~ 119 (406)
.||+|+|+.| +|.++++.|.....-++..+-.+ ...|+ .+.+..|........ .+
T Consensus 22 s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~ 100 (197)
T cd01492 22 ARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDI 100 (197)
T ss_pred CcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCc
Confidence 5899999666 99999999986554445444321 12232 122333332211000 01
Q ss_pred cccCcccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEE
Q 015441 120 VAVKDADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVD 157 (406)
Q Consensus 120 ~~~~~~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VID 157 (406)
.+..++.|.+.|+|++|++...++..+.. . +.++.+|.
T Consensus 101 ~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~ 140 (197)
T cd01492 101 SEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYA 140 (197)
T ss_pred cccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 11112235789999999887655444433 2 45777663
No 321
>PRK05693 short chain dehydrogenase; Provisional
Probab=84.37 E-value=0.99 Score=43.20 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=25.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|.+|+++++.|.+.. .+++.+.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G-~~V~~~~ 32 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAG-YEVWATA 32 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999999999999998653 5665553
No 322
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.29 E-value=2.1 Score=41.93 Aligned_cols=98 Identities=15% Similarity=0.243 Sum_probs=51.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC--Ccccc-------ccc--cCccccC----CCccc-ccCcccC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA--GQSIG-------SVF--PHLISQD----LPTMV-AVKDADF 127 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~--G~~i~-------~v~--p~l~~~~----~~~~~-~~~~~~~ 127 (406)
.||+|+| .|..|..+...|+.. ..++..+ +++.. .+-.. ... ..+...+ +..+. ..+.+++
T Consensus 5 ~kI~vIG-aG~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 81 (292)
T PRK07530 5 KKVGVIG-AGQMGNGIAHVCALA-GYDVLLN-DVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDL 81 (292)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHC-CCeEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHh
Confidence 5799999 899999999988864 2455544 32211 00000 000 0000000 00001 0112235
Q ss_pred CCCCEEEEcCCCcch--HHHH----hhCCCCCEEEEcCCcccC
Q 015441 128 SNVDAVFCCLPHGTT--QEII----KGLPKSLKIVDLSADFRL 164 (406)
Q Consensus 128 ~~vDvVF~al~~~~s--~~~~----~~l~~G~~VIDlSa~fRl 164 (406)
.++|+||+|.|.... ..+. +.+..++.++.+++....
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 124 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI 124 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 689999999997533 2222 234556777766666543
No 323
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=84.06 E-value=1.1 Score=43.79 Aligned_cols=84 Identities=14% Similarity=0.219 Sum_probs=46.7
Q ss_pred EECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-HHHH
Q 015441 68 LLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT-QEII 146 (406)
Q Consensus 68 IvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s-~~~~ 146 (406)
|+| .|.+|..+.+.|.+.. .++... +++.. +... +........... .+...++|+||+|+|.... .++.
T Consensus 1 ~IG-lG~mG~~mA~~L~~~G-~~V~v~-dr~~~--~~~~----l~~~g~~~~~s~-~~~~~~advVil~vp~~~~~~~v~ 70 (288)
T TIGR01692 1 FIG-LGNMGGPMAANLLKAG-HPVRVF-DLFPD--AVEE----AVAAGAQAAASP-AEAAEGADRVITMLPAGQHVISVY 70 (288)
T ss_pred CCc-ccHhHHHHHHHHHhCC-CeEEEE-eCCHH--HHHH----HHHcCCeecCCH-HHHHhcCCEEEEeCCChHHHHHHH
Confidence 467 9999999999988643 355444 33221 1111 000001001111 1234679999999997443 3333
Q ss_pred -------hhCCCCCEEEEcCCc
Q 015441 147 -------KGLPKSLKIVDLSAD 161 (406)
Q Consensus 147 -------~~l~~G~~VIDlSa~ 161 (406)
+.+..|..|||.|+-
T Consensus 71 ~g~~~l~~~~~~g~~vid~st~ 92 (288)
T TIGR01692 71 SGDEGILPKVAKGSLLIDCSTI 92 (288)
T ss_pred cCcchHhhcCCCCCEEEECCCC
Confidence 223567899999864
No 324
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=83.97 E-value=1.3 Score=44.02 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=25.2
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+|.|.||||++|+.|++.|.... .+++.+.
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~ 31 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG-YEVHGLI 31 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 79999999999999999998653 4776664
No 325
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=83.94 E-value=1.1 Score=46.04 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=24.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|||+|+| |||||-...-+|+++- .+++++-
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~G-HeVv~vD 30 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELG-HEVVCVD 30 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcC-CeEEEEe
Confidence 5899999 9999998888888654 3666664
No 326
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=83.94 E-value=1.9 Score=41.96 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=23.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+||.|+|+||+ |+.|++.|.... .++...+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g-~~v~~s~ 30 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG-IEILVTV 30 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC-CeEEEEE
Confidence 47999999999 999999888654 4554444
No 327
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=83.93 E-value=3.4 Score=40.86 Aligned_cols=30 Identities=17% Similarity=0.371 Sum_probs=24.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++|+|+| .|.+|..+...|+.+- .+++.+.
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G-~~V~v~d 32 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAG-HEVRLWD 32 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCC-CeeEEEe
Confidence 4899999 9999999999998763 4555553
No 328
>PRK06953 short chain dehydrogenase; Provisional
Probab=83.84 E-value=1.4 Score=40.68 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=25.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|.++.|.||+|.+|+.+++.|+.+ ..+++.+.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~-G~~v~~~~ 32 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRAD-GWRVIATA 32 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhC-CCEEEEEE
Confidence 357999999999999999998865 45666654
No 329
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=83.53 E-value=1.2 Score=48.83 Aligned_cols=26 Identities=15% Similarity=0.428 Sum_probs=22.5
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANH 86 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~h 86 (406)
++++||.|.||+|++|+.|++.|...
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~ 403 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQ 403 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhC
Confidence 34569999999999999999999754
No 330
>PRK06182 short chain dehydrogenase; Validated
Probab=83.51 E-value=0.93 Score=43.35 Aligned_cols=31 Identities=23% Similarity=0.142 Sum_probs=25.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+++++.|.+.. .+++.+.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G-~~V~~~~ 34 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQG-YTVYGAA 34 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999999999999998653 4665554
No 331
>PRK12743 oxidoreductase; Provisional
Probab=83.42 E-value=1.4 Score=41.71 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=25.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.+|.|.||+|.+|+++++.|+++. .+++.+.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G-~~V~~~~ 33 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQG-FDIGITW 33 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 3479999999999999999999764 4665554
No 332
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=83.33 E-value=1.8 Score=41.86 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=23.2
Q ss_pred EEEECcccHHHHHHHHHHHcCC---CceEEEEe
Q 015441 66 IGLLGASGYTGAEIVRLLANHP---YFGIKLMT 95 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp---~~elv~l~ 95 (406)
|+|+||.|.+|..++..|...+ ..+++.+-
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D 33 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYD 33 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEe
Confidence 6899998999999999887544 24666553
No 333
>PRK07023 short chain dehydrogenase; Provisional
Probab=83.31 E-value=1.7 Score=40.64 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=26.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|+++.|.||+|.+|+.+++.|+++. .+++.+.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G-~~v~~~~ 32 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPG-IAVLGVA 32 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCC-CEEEEEe
Confidence 3589999999999999999998764 5665553
No 334
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=83.22 E-value=3.7 Score=43.49 Aligned_cols=85 Identities=9% Similarity=0.099 Sum_probs=49.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc--c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--T 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~--~ 141 (406)
.+|+|+| .|.+|+.+++.|..+- ++++... +.. .+...... .+... ..+ ++.+..+|+|+.|++.. +
T Consensus 255 KtVgVIG-~G~IGr~vA~rL~a~G-a~ViV~e-~dp-~~a~~A~~---~G~~~---~~l-eell~~ADIVI~atGt~~iI 323 (476)
T PTZ00075 255 KTVVVCG-YGDVGKGCAQALRGFG-ARVVVTE-IDP-ICALQAAM---EGYQV---VTL-EDVVETADIFVTATGNKDII 323 (476)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEe-CCc-hhHHHHHh---cCcee---ccH-HHHHhcCCEEEECCCccccc
Confidence 5799999 9999999999998764 4554432 211 11100000 01111 111 22346899999998742 2
Q ss_pred hHHHHhhCCCCCEEEEcC
Q 015441 142 TQEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlS 159 (406)
..+....++.|+.+|+.+
T Consensus 324 ~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 324 TLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred CHHHHhccCCCcEEEEcC
Confidence 345556667889999553
No 335
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=83.21 E-value=2.5 Score=41.89 Aligned_cols=89 Identities=15% Similarity=0.253 Sum_probs=52.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
+||+.|| .|..|.-+.+-|.+-- +++.... ++. .+...... -.+.. ..... .+...++|+||.|++.+...
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG-~~v~v~~-r~~-~ka~~~~~--~~Ga~--~a~s~-~eaa~~aDvVitmv~~~~~V 71 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAG-HEVTVYN-RTP-EKAAELLA--AAGAT--VAASP-AEAAAEADVVITMLPDDAAV 71 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCC-CEEEEEe-CCh-hhhhHHHH--HcCCc--ccCCH-HHHHHhCCEEEEecCCHHHH
Confidence 4799999 9999999999888532 3444443 221 11111000 00111 01111 23346899999999988775
Q ss_pred HHHh--------hCCCCCEEEEcCCc
Q 015441 144 EIIK--------GLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~--------~l~~G~~VIDlSa~ 161 (406)
+-+- .+..|..|||+|..
T Consensus 72 ~~V~~g~~g~~~~~~~G~i~IDmSTi 97 (286)
T COG2084 72 RAVLFGENGLLEGLKPGAIVIDMSTI 97 (286)
T ss_pred HHHHhCccchhhcCCCCCEEEECCCC
Confidence 4331 12358899999885
No 336
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=83.02 E-value=3.1 Score=43.60 Aligned_cols=85 Identities=20% Similarity=0.378 Sum_probs=54.0
Q ss_pred cEEEEECcc---cHHHHHHHHHHHcCCC-ceEEEEeccCcCCccccccccCcccc-CCCcccccCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGAS---GYTGAEIVRLLANHPY-FGIKLMTADRKAGQSIGSVFPHLISQ-DLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGAT---G~vG~eLlrlL~~hp~-~elv~l~s~~~~G~~i~~v~p~l~~~-~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
.+|+|+||| |-.|..+++.|.++.. -++..++-+.. +++ +. -++.+.++ -..+|+++.|+|
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~------~i~----G~~~~~sl~~l----p~~~Dlavi~vp 73 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG------EIL----GVKAYPSVLEI----PDPVDLAVIVVP 73 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC------ccC----CccccCCHHHC----CCCCCEEEEecC
Confidence 479999998 6689999998887653 36766654321 111 11 11112222 146899999999
Q ss_pred CcchHHHHhhC-CCCC--EEEEcCCccc
Q 015441 139 HGTTQEIIKGL-PKSL--KIVDLSADFR 163 (406)
Q Consensus 139 ~~~s~~~~~~l-~~G~--~VIDlSa~fR 163 (406)
.....+.++.+ ++|+ .|| +|+-|.
T Consensus 74 ~~~~~~~l~e~~~~gv~~~vi-~s~gf~ 100 (447)
T TIGR02717 74 AKYVPQVVEECGEKGVKGAVV-ITAGFK 100 (447)
T ss_pred HHHHHHHHHHHHhcCCCEEEE-ECCCcc
Confidence 99888888765 6665 334 566564
No 337
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=82.97 E-value=1.8 Score=44.26 Aligned_cols=34 Identities=26% Similarity=0.547 Sum_probs=27.0
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCC-CceEEEE
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHP-YFGIKLM 94 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l 94 (406)
+++.++.|+|++|++|+.|++.|.+.. ..++..+
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~ 36 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVV 36 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEe
Confidence 345789999999999999999998654 5566544
No 338
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=82.93 E-value=3.5 Score=41.66 Aligned_cols=83 Identities=17% Similarity=0.329 Sum_probs=46.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.||+.+++.|..+- ......++... +.++.+. .... ..++ ++.+.++|+++.|.|-...
T Consensus 163 K~vgilG-~G~IG~~ia~rL~~Fg--~~i~y~~r~~~--~~~~~~~-~~~~----~~d~-~~~~~~sD~ivv~~pLt~~T 231 (336)
T KOG0069|consen 163 KTVGILG-LGRIGKAIAKRLKPFG--CVILYHSRTQL--PPEEAYE-YYAE----FVDI-EELLANSDVIVVNCPLTKET 231 (336)
T ss_pred CEEEEec-CcHHHHHHHHhhhhcc--ceeeeecccCC--chhhHHH-hccc----ccCH-HHHHhhCCEEEEecCCCHHH
Confidence 5899999 9999999999998654 33334333321 1111100 0000 1111 2234689999888885444
Q ss_pred HHHH-----hhCCCCCEEEE
Q 015441 143 QEII-----KGLPKSLKIVD 157 (406)
Q Consensus 143 ~~~~-----~~l~~G~~VID 157 (406)
..+. .+.+.|+++|-
T Consensus 232 ~~liNk~~~~~mk~g~vlVN 251 (336)
T KOG0069|consen 232 RHLINKKFIEKMKDGAVLVN 251 (336)
T ss_pred HHHhhHHHHHhcCCCeEEEe
Confidence 3333 33456788773
No 339
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=82.74 E-value=3.6 Score=41.55 Aligned_cols=89 Identities=13% Similarity=0.213 Sum_probs=52.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|+||| .|.+|+.+.+.|..+ .+++....+. . +...... . .+ .. ..++ .+.+..+|+|++++|...++
T Consensus 17 KtVGIIG-~GsIG~amA~nL~d~-G~~ViV~~r~-~--~s~~~A~-~-~G--~~-v~sl-~Eaak~ADVV~llLPd~~t~ 85 (335)
T PRK13403 17 KTVAVIG-YGSQGHAQAQNLRDS-GVEVVVGVRP-G--KSFEVAK-A-DG--FE-VMSV-SEAVRTAQVVQMLLPDEQQA 85 (335)
T ss_pred CEEEEEe-EcHHHHHHHHHHHHC-cCEEEEEECc-c--hhhHHHH-H-cC--CE-ECCH-HHHHhcCCEEEEeCCChHHH
Confidence 4799999 999999999999865 3566554432 1 1111100 0 01 11 1111 23346899999999976665
Q ss_pred HHH-----hhCCCCCEEEEcCCcccC
Q 015441 144 EII-----KGLPKSLKIVDLSADFRL 164 (406)
Q Consensus 144 ~~~-----~~l~~G~~VIDlSa~fRl 164 (406)
.+. +.+..|..++ .|--|-.
T Consensus 86 ~V~~~eil~~MK~GaiL~-f~hgfni 110 (335)
T PRK13403 86 HVYKAEVEENLREGQMLL-FSHGFNI 110 (335)
T ss_pred HHHHHHHHhcCCCCCEEE-ECCCcce
Confidence 543 2235677665 5555543
No 340
>PRK07326 short chain dehydrogenase; Provisional
Probab=82.46 E-value=1.8 Score=40.03 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=25.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|+||+|.+|+.+++.|.++ ..+++.+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-GYKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-CCEEEEee
Confidence 57999999999999999999876 45766654
No 341
>PRK07877 hypothetical protein; Provisional
Probab=82.45 E-value=1.5 Score=48.69 Aligned_cols=95 Identities=17% Similarity=0.229 Sum_probs=54.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEec--------------cCcCCc--------cccccccCccccCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTA--------------DRKAGQ--------SIGSVFPHLISQDLPTM 119 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s--------------~~~~G~--------~i~~v~p~l~~~~~~~~ 119 (406)
..||+|+|+ | +|..++..|..--. -+|+.+-. ....|+ ++..+.|.+....++
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~-- 182 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT-- 182 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe--
Confidence 368999998 8 89999999885432 24433321 112221 222233332211111
Q ss_pred cccCcc----cCCCCCEEEEcCCCcchHHHHhh--CCCCCEEEEcCCc
Q 015441 120 VAVKDA----DFSNVDAVFCCLPHGTTQEIIKG--LPKSLKIVDLSAD 161 (406)
Q Consensus 120 ~~~~~~----~~~~vDvVF~al~~~~s~~~~~~--l~~G~~VIDlSa~ 161 (406)
..++++ .+.++|+|++|+.+..++-++.. .+.|+.+|.-+++
T Consensus 183 ~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~ 230 (722)
T PRK07877 183 DGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSD 230 (722)
T ss_pred ccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 112211 24689999999999888776643 3678888866653
No 342
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.39 E-value=2.7 Score=41.16 Aligned_cols=98 Identities=14% Similarity=0.294 Sum_probs=52.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-c----cccc-------cc--cCccccC----CCcccc-cCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-Q----SIGS-------VF--PHLISQD----LPTMVA-VKD 124 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~----~i~~-------v~--p~l~~~~----~~~~~~-~~~ 124 (406)
.||+|+| .|.+|..+...|+.+- .+++.+. ++..- + .+.. .. ..+...+ ...+.. .+.
T Consensus 4 ~~I~ViG-aG~mG~~iA~~la~~G-~~V~l~d-~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 80 (291)
T PRK06035 4 KVIGVVG-SGVMGQGIAQVFARTG-YDVTIVD-VSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY 80 (291)
T ss_pred cEEEEEC-ccHHHHHHHHHHHhcC-CeEEEEe-CCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence 4799999 8999999999998653 4555543 22110 0 0000 00 0000000 000111 111
Q ss_pred ccCCCCCEEEEcCCCcch--HHHHhh----CCCCCEEEEcCCcccC
Q 015441 125 ADFSNVDAVFCCLPHGTT--QEIIKG----LPKSLKIVDLSADFRL 164 (406)
Q Consensus 125 ~~~~~vDvVF~al~~~~s--~~~~~~----l~~G~~VIDlSa~fRl 164 (406)
+.+.++|+||+|.+.... +++.+. +..++.++.+++.+..
T Consensus 81 ~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~ 126 (291)
T PRK06035 81 ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMI 126 (291)
T ss_pred HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCH
Confidence 235689999999997753 333332 3456778887776544
No 343
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=82.32 E-value=2.1 Score=42.72 Aligned_cols=31 Identities=13% Similarity=0.181 Sum_probs=25.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++|.|.||+|++|+.|++.|++.. .+++.+.
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G-~~V~~~~ 35 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELG-AEVYGYS 35 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999998653 4666554
No 344
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=82.19 E-value=2.1 Score=39.50 Aligned_cols=31 Identities=23% Similarity=0.113 Sum_probs=25.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+.+++.|.++.. ++..+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~ 36 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGA-KVVIYD 36 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 5799999999999999999987753 554443
No 345
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=82.14 E-value=3.9 Score=36.62 Aligned_cols=74 Identities=7% Similarity=0.170 Sum_probs=44.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+| .|-+|...++.|++.. .+++.++ .. ..+.+.. .+.+. + ....+++.++.++|+||.|++....-
T Consensus 14 ~~vlVvG-GG~va~rka~~Ll~~g-a~V~VIs-p~-~~~~l~~-l~~i~---~-~~~~~~~~dl~~a~lViaaT~d~e~N 84 (157)
T PRK06719 14 KVVVIIG-GGKIAYRKASGLKDTG-AFVTVVS-PE-ICKEMKE-LPYIT---W-KQKTFSNDDIKDAHLIYAATNQHAVN 84 (157)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCC-CEEEEEc-Cc-cCHHHHh-ccCcE---E-EecccChhcCCCceEEEECCCCHHHH
Confidence 5799999 9999999999888643 4666553 22 1122211 01110 0 01123345678899999999877654
Q ss_pred HHH
Q 015441 144 EII 146 (406)
Q Consensus 144 ~~~ 146 (406)
...
T Consensus 85 ~~i 87 (157)
T PRK06719 85 MMV 87 (157)
T ss_pred HHH
Confidence 444
No 346
>PRK09291 short chain dehydrogenase; Provisional
Probab=82.09 E-value=2.2 Score=39.99 Aligned_cols=32 Identities=22% Similarity=0.145 Sum_probs=25.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.+|.|.||||.+|+.+++.|.+.. .+++.+.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~ 33 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKG-HNVIAGV 33 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 4579999999999999999998754 5666554
No 347
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=82.04 E-value=2.1 Score=39.96 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=26.6
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
||.+|.|.||+|.+|+.+++.|.++. .+++.+.
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g-~~v~~~~ 33 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG-WSVGINY 33 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 45689999999999999999998764 4555443
No 348
>PRK08328 hypothetical protein; Provisional
Probab=81.88 E-value=2.3 Score=40.51 Aligned_cols=91 Identities=16% Similarity=0.292 Sum_probs=51.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEec---------------cCcCCcc---------ccccccCccccCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA---------------DRKAGQS---------IGSVFPHLISQDLPTM 119 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s---------------~~~~G~~---------i~~v~p~l~~~~~~~~ 119 (406)
.||+|+| .|-+|.++++.|.....-+++.+-. ....|+. +....|........
T Consensus 28 ~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~-- 104 (231)
T PRK08328 28 AKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV-- 104 (231)
T ss_pred CcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe--
Confidence 5799999 6777999999998654444544421 1223331 12222222111000
Q ss_pred cccCc----ccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEE
Q 015441 120 VAVKD----ADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVD 157 (406)
Q Consensus 120 ~~~~~----~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VID 157 (406)
..+++ +.+.+.|+||+|+.+..++.+... . +.|+++|.
T Consensus 105 ~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~ 148 (231)
T PRK08328 105 GRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVH 148 (231)
T ss_pred ccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 01111 124689999999998766665543 2 56888885
No 349
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=81.83 E-value=2.2 Score=38.77 Aligned_cols=87 Identities=14% Similarity=0.240 Sum_probs=46.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc--c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--T 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~--~ 141 (406)
.++.|+| .|.+|+-+.+.|...- .++ .++..... +.+... ..+.+. ..+ ++....+|++|.||+.. +
T Consensus 24 k~vvV~G-YG~vG~g~A~~lr~~G-a~V-~V~e~DPi-~alqA~---~dGf~v---~~~-~~a~~~adi~vtaTG~~~vi 92 (162)
T PF00670_consen 24 KRVVVIG-YGKVGKGIARALRGLG-ARV-TVTEIDPI-RALQAA---MDGFEV---MTL-EEALRDADIFVTATGNKDVI 92 (162)
T ss_dssp SEEEEE---SHHHHHHHHHHHHTT--EE-EEE-SSHH-HHHHHH---HTT-EE---E-H-HHHTTT-SEEEE-SSSSSSB
T ss_pred CEEEEeC-CCcccHHHHHHHhhCC-CEE-EEEECChH-HHHHhh---hcCcEe---cCH-HHHHhhCCEEEECCCCcccc
Confidence 4799999 9999999999998653 333 33332210 111110 111111 112 23346789999999964 3
Q ss_pred hHHHHhhCCCCCEEEEcCCcc
Q 015441 142 TQEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~f 162 (406)
..+..++++.|+.|.+. +.|
T Consensus 93 ~~e~~~~mkdgail~n~-Gh~ 112 (162)
T PF00670_consen 93 TGEHFRQMKDGAILANA-GHF 112 (162)
T ss_dssp -HHHHHHS-TTEEEEES-SSS
T ss_pred CHHHHHHhcCCeEEecc-CcC
Confidence 57777888889988854 445
No 350
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=81.72 E-value=2 Score=43.34 Aligned_cols=97 Identities=10% Similarity=0.129 Sum_probs=54.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
...++||| +|..++--++.+...-.++-+.+.+++... ..+..-.....+.++...... ++...++|+|+.||++..
T Consensus 130 a~~laiIG-aG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~-~~av~~aDiIvt~T~s~~ 207 (330)
T COG2423 130 ASTLAIIG-AGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSA-EEAVEGADIVVTATPSTE 207 (330)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCH-HHHhhcCCEEEEecCCCC
Confidence 35799999 999999999988863334444555544321 111110000001111111111 234578999999999775
Q ss_pred hHHHH--hhCCCCCEEEEcCCccc
Q 015441 142 TQEII--KGLPKSLKIVDLSADFR 163 (406)
Q Consensus 142 s~~~~--~~l~~G~~VIDlSa~fR 163 (406)
.+. ..++.|..|.-.+++.+
T Consensus 208 --Pil~~~~l~~G~hI~aiGad~p 229 (330)
T COG2423 208 --PVLKAEWLKPGTHINAIGADAP 229 (330)
T ss_pred --CeecHhhcCCCcEEEecCCCCc
Confidence 333 23578888776677643
No 351
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=81.66 E-value=2.1 Score=43.23 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=51.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC---------------cCC----------ccccccccCccccCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR---------------KAG----------QSIGSVFPHLISQDLPT 118 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~---------------~~G----------~~i~~v~p~l~~~~~~~ 118 (406)
.||+|+| .|-+|..+++.|...-.-+++.+-.+. .+| +.+.+..|.+....+.
T Consensus 25 ~~VlIiG-~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~- 102 (338)
T PRK12475 25 KHVLIVG-AGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV- 102 (338)
T ss_pred CcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe-
Confidence 5899999 677999999999865444554443221 111 1122223322111100
Q ss_pred ccccC----cccCCCCCEEEEcCCCcchHHHHhhC--CCCCEEEE
Q 015441 119 MVAVK----DADFSNVDAVFCCLPHGTTQEIIKGL--PKSLKIVD 157 (406)
Q Consensus 119 ~~~~~----~~~~~~vDvVF~al~~~~s~~~~~~l--~~G~~VID 157 (406)
..++ ++.+.++|+|+.|+++..++.++..+ +.|+..|.
T Consensus 103 -~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~ 146 (338)
T PRK12475 103 -TDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIY 146 (338)
T ss_pred -ccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence 0111 12246899999999988776665432 45777774
No 352
>PRK08017 oxidoreductase; Provisional
Probab=81.45 E-value=2.4 Score=39.68 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=25.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+.+++.|.++. .+++.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g-~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG-YRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 469999999999999999998664 4665543
No 353
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.31 E-value=2.3 Score=39.37 Aligned_cols=31 Identities=29% Similarity=0.263 Sum_probs=25.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
+.+|.|.||||.+|+++++.|.++. .+++.+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g-~~v~~~ 35 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEG-AKVVIA 35 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEE
Confidence 3579999999999999999998764 566555
No 354
>PRK07589 ornithine cyclodeaminase; Validated
Probab=81.26 E-value=1.9 Score=43.78 Aligned_cols=94 Identities=10% Similarity=0.073 Sum_probs=50.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
..+++|+| +|..++..++.+.. +| ++-+.+.++.... +.+..-.... +.++...... ++...++|+|++||++.
T Consensus 129 a~~l~iiG-aG~QA~~~l~a~~~vr~-i~~V~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~-~~av~~ADIIvtaT~S~ 204 (346)
T PRK07589 129 SRTMALIG-NGAQSEFQALAFKALLG-IEEIRLYDIDPAATAKLARNLAGP-GLRIVACRSV-AEAVEGADIITTVTADK 204 (346)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHHhCC-ceEEEEEeCCHHHHHHHHHHHHhc-CCcEEEeCCH-HHHHhcCCEEEEecCCC
Confidence 45799999 99999999987764 55 4444555543221 1111000000 1111111111 23347899999999754
Q ss_pred chHHHH--hhCCCCCEEEEcCC
Q 015441 141 TTQEII--KGLPKSLKIVDLSA 160 (406)
Q Consensus 141 ~s~~~~--~~l~~G~~VIDlSa 160 (406)
....+. +.++.|..|+-..+
T Consensus 205 ~~~Pvl~~~~lkpG~hV~aIGs 226 (346)
T PRK07589 205 TNATILTDDMVEPGMHINAVGG 226 (346)
T ss_pred CCCceecHHHcCCCcEEEecCC
Confidence 322222 23567888664444
No 355
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=81.24 E-value=1.5 Score=36.30 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=40.6
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccc-cccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS-VFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~-v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
|.|+| .|..|+++++.|.. ...+++.+..+...-..+.. .++.+.+ +......+....+.++|.++.+++....
T Consensus 1 vvI~G-~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~~~~~~i~g-d~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIG-YGRIGREIAEQLKE-GGIDVVVIDRDPERVEELREEGVEVIYG-DATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES--SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHTTSEEEES--TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEc-CCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHhcccccccc-cchhhhHHhhcCccccCEEEEccCCHHH
Confidence 57899 78999999999987 44677777654321111110 0111112 1111111222344688999999987654
No 356
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=81.24 E-value=1.5 Score=41.67 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=22.0
Q ss_pred EECcccHHHHHHHHHHHcCCC-ceEEEEec
Q 015441 68 LLGASGYTGAEIVRLLANHPY-FGIKLMTA 96 (406)
Q Consensus 68 IvGATG~vG~eLlrlL~~hp~-~elv~l~s 96 (406)
|-||||++|..|++.|+..+. .++.++..
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR 30 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVR 30 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 579999999999998886544 58888864
No 357
>PRK07856 short chain dehydrogenase; Provisional
Probab=81.20 E-value=2.1 Score=40.29 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=25.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|.+|+++++.|.++. .+++.+.
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g-~~v~~~~ 37 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAG-ATVVVCG 37 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999998754 4665553
No 358
>PRK06199 ornithine cyclodeaminase; Validated
Probab=81.06 E-value=2 Score=44.10 Aligned_cols=90 Identities=14% Similarity=0.278 Sum_probs=52.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCcCC-----ccccccccCccccCCCcccccCcccCCCCCEEEEc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAG-----QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~~G-----~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
..+++|+| +|.-++.-++.+.. +|.++-+.+.++.... +.+...++.+ .++...... ++...++|+|++|
T Consensus 155 a~~l~iiG-~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~--~~v~~~~s~-~eav~~ADIVvta 230 (379)
T PRK06199 155 SKVVGLLG-PGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQI--TNVEVVDSI-EEVVRGSDIVTYC 230 (379)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCC--ceEEEeCCH-HHHHcCCCEEEEc
Confidence 46899999 99999999998875 6767777777665321 1111111110 011111111 2335789999999
Q ss_pred CCCcch---H-HHH--hhCCCCCEEE
Q 015441 137 LPHGTT---Q-EII--KGLPKSLKIV 156 (406)
Q Consensus 137 l~~~~s---~-~~~--~~l~~G~~VI 156 (406)
|+.... . .+. ..++.|..|+
T Consensus 231 T~s~~~~~s~~Pv~~~~~lkpG~hv~ 256 (379)
T PRK06199 231 NSGETGDPSTYPYVKREWVKPGAFLL 256 (379)
T ss_pred cCCCCCCCCcCcEecHHHcCCCcEEe
Confidence 975431 1 222 2355677765
No 359
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=80.77 E-value=2.2 Score=42.06 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=29.6
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD 97 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~ 97 (406)
..+.||+|+||.|-|||-|--||...|.+.-.++.+-
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi 62 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI 62 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcCcccceeeeeec
Confidence 3458999999999999999888877787765566653
No 360
>PRK06398 aldose dehydrogenase; Validated
Probab=80.77 E-value=2.4 Score=40.34 Aligned_cols=30 Identities=17% Similarity=0.075 Sum_probs=24.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
.++.|.||+|.+|+++++.|.++. .+++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G-~~Vi~~ 36 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEG-SNVINF 36 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CeEEEE
Confidence 479999999999999999998754 355544
No 361
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.73 E-value=1.8 Score=45.49 Aligned_cols=76 Identities=14% Similarity=0.146 Sum_probs=44.4
Q ss_pred CCccEEEEECcccHHHHHHHHHHHc------CCCceEEEEecc--C--cCCccccccc---cCccccCCCcccccCcccC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLAN------HPYFGIKLMTAD--R--KAGQSIGSVF---PHLISQDLPTMVAVKDADF 127 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~------hp~~elv~l~s~--~--~~G~~i~~v~---p~l~~~~~~~~~~~~~~~~ 127 (406)
...+||+|.||+|.+|=.|+-.|++ +..+.|+.+--. . ..|..++-.+ |.+. .+. +..-+.+++
T Consensus 121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~--~v~-i~~~~~ea~ 197 (452)
T cd05295 121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLR--GIS-VTTDLDVAF 197 (452)
T ss_pred CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcC--CcE-EEECCHHHh
Confidence 3458999999999999999999984 334556555321 1 1122222111 2111 111 112223567
Q ss_pred CCCCEEEEcCCC
Q 015441 128 SNVDAVFCCLPH 139 (406)
Q Consensus 128 ~~vDvVF~al~~ 139 (406)
.++|+||++.+.
T Consensus 198 ~daDvvIitag~ 209 (452)
T cd05295 198 KDAHVIVLLDDF 209 (452)
T ss_pred CCCCEEEECCCC
Confidence 889999988764
No 362
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.71 E-value=2.7 Score=38.21 Aligned_cols=91 Identities=21% Similarity=0.392 Sum_probs=50.0
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccC--------------cCCc--------cccccccCccccCCCccccc
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR--------------KAGQ--------SIGSVFPHLISQDLPTMVAV 122 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~--------------~~G~--------~i~~v~p~l~~~~~~~~~~~ 122 (406)
||+|+| .|-+|.++++.|.....-+++.+-.+. +.|+ ++....|......+. ..+
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~--~~~ 77 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAIN--IKI 77 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEE--eec
Confidence 589999 688899999999865444454443221 1221 122222222110000 111
Q ss_pred Cc----ccCCCCCEEEEcCCCcchHHHH-hhC-CC-CCEEEEc
Q 015441 123 KD----ADFSNVDAVFCCLPHGTTQEII-KGL-PK-SLKIVDL 158 (406)
Q Consensus 123 ~~----~~~~~vDvVF~al~~~~s~~~~-~~l-~~-G~~VIDl 158 (406)
+. +.+.++|+||.|+.+..++... ..+ .. ++.+|--
T Consensus 78 ~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 78 DENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred ChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 11 2256899999999887776633 333 44 7777643
No 363
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.58 E-value=3.4 Score=40.96 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=48.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..||+=|..+|.+. +..++..-++. .++ .+...++|+|+.|.|..
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~-~aTVtichs~T---------------~~l-------~~~~~~ADIvIsAvGkp--- 209 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLRE-DATVTLAHSKT---------------QDL-------PAVTRRADVLVVAVGRP--- 209 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-CCEEEEeCCCC---------------CCH-------HHHHhhCCEEEEecCCc---
Confidence 58999999999999999999864 34443332211 111 11225789999999854
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
.+.. .+..|..|||.+-.+
T Consensus 210 ~~i~~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 210 HLITPEMVRPGAVVVDVGINR 230 (287)
T ss_pred CccCHHHcCCCCEEEEccCcc
Confidence 2232 257799999987653
No 364
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=80.51 E-value=2.6 Score=40.52 Aligned_cols=92 Identities=20% Similarity=0.290 Sum_probs=52.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEec---------------cCcCCc--------cccccccCccccCCCccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA---------------DRKAGQ--------SIGSVFPHLISQDLPTMV 120 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s---------------~~~~G~--------~i~~v~p~l~~~~~~~~~ 120 (406)
.||+|+| .|-+|.++++.|...-.-+++.+-. ..+.|+ .+.+..|+.....+. .
T Consensus 25 ~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~--~ 101 (240)
T TIGR02355 25 SRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN--A 101 (240)
T ss_pred CcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe--c
Confidence 5899999 7778999999998543334443321 122332 122233332211110 1
Q ss_pred ccCc----ccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEEc
Q 015441 121 AVKD----ADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDL 158 (406)
Q Consensus 121 ~~~~----~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VIDl 158 (406)
.+++ +.+.++|+||.|+.+..++.++.. . ..++++|.-
T Consensus 102 ~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~ 145 (240)
T TIGR02355 102 KLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSG 145 (240)
T ss_pred cCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 1111 124689999999998877766643 3 568888853
No 365
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=80.35 E-value=2.8 Score=41.37 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=50.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccccc---CccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFP---HLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p---~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
-+|.|.||+|-+|..+++++...-..+++.+.+.......+..-++ .+...+......+....-.++|+||.|++..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~~ 235 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGGE 235 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCcH
Confidence 4799999999999999987765432256665543211011100000 0000010000001000013789999999876
Q ss_pred chHHHHhhCCCCCEEEEcC
Q 015441 141 TTQEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 141 ~s~~~~~~l~~G~~VIDlS 159 (406)
...+....+..+.++|+++
T Consensus 236 ~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 236 ISDTVISQMNENSHIILCG 254 (345)
T ss_pred HHHHHHHHhccCCEEEEEe
Confidence 5555556666666667654
No 366
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.27 E-value=3.3 Score=41.18 Aligned_cols=74 Identities=11% Similarity=0.229 Sum_probs=49.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcC---CCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH---PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h---p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
.+|.|+|.+..||+=|.-+|.++ ....+....+.. .++ .+....+|+|+.|.|..
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t---------------~~l-------~~~~~~ADIvI~Avg~~ 217 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT---------------KDI-------PSYTRQADILIAAIGKA 217 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc---------------hhH-------HHHHHhCCEEEEecCcc
Confidence 58999999999999999998863 233443333211 011 12235789999999754
Q ss_pred chHHHHh--hCCCCCEEEEcCCcc
Q 015441 141 TTQEIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 141 ~s~~~~~--~l~~G~~VIDlSa~f 162 (406)
++.. .+..|..|||.+-++
T Consensus 218 ---~li~~~~vk~GavVIDVgi~~ 238 (295)
T PRK14174 218 ---RFITADMVKPGAVVIDVGINR 238 (295)
T ss_pred ---CccCHHHcCCCCEEEEeeccc
Confidence 3332 257799999998775
No 367
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=80.03 E-value=5 Score=41.94 Aligned_cols=87 Identities=8% Similarity=0.021 Sum_probs=49.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+.+++.|...- .+++.. +... .+...... .+.... .+ .+.+.++|+||.|++....
T Consensus 213 k~VlViG-~G~IG~~vA~~lr~~G-a~ViV~-d~dp-~ra~~A~~---~G~~v~---~l-~eal~~aDVVI~aTG~~~vI 281 (425)
T PRK05476 213 KVVVVAG-YGDVGKGCAQRLRGLG-ARVIVT-EVDP-ICALQAAM---DGFRVM---TM-EEAAELGDIFVTATGNKDVI 281 (425)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCC-CEEEEE-cCCc-hhhHHHHh---cCCEec---CH-HHHHhCCCEEEECCCCHHHH
Confidence 4799999 8999999999998764 354443 3221 11111000 011111 11 1234579999999975432
Q ss_pred -HHHHhhCCCCCEEEEcCCcc
Q 015441 143 -QEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 143 -~~~~~~l~~G~~VIDlSa~f 162 (406)
.+....+..|..++ +.+-|
T Consensus 282 ~~~~~~~mK~Gaili-NvG~~ 301 (425)
T PRK05476 282 TAEHMEAMKDGAILA-NIGHF 301 (425)
T ss_pred HHHHHhcCCCCCEEE-EcCCC
Confidence 23444456788888 44544
No 368
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=79.40 E-value=2.7 Score=42.92 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=52.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc---------------CcCCc--------cccccccCccccCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQ--------SIGSVFPHLISQDLPTM 119 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~---------------~~~G~--------~i~~v~p~l~~~~~~~~ 119 (406)
..||.|+| .|-+|.+++..|.....-++..+-.+ ...|+ .+.+..|........
T Consensus 135 ~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~-- 211 (376)
T PRK08762 135 EARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ-- 211 (376)
T ss_pred cCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe--
Confidence 35899999 67789999999986655555555332 12221 122222222110000
Q ss_pred cccCc----ccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEEc
Q 015441 120 VAVKD----ADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDL 158 (406)
Q Consensus 120 ~~~~~----~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VIDl 158 (406)
..+++ +.+.++|+|+.|+.+..++.++.. . ..++.+|..
T Consensus 212 ~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~ 256 (376)
T PRK08762 212 ERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYG 256 (376)
T ss_pred ccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 01111 123679999999998777665543 2 567877753
No 369
>PRK09135 pteridine reductase; Provisional
Probab=79.21 E-value=3.4 Score=38.27 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=25.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+.+++.|.++. .+++.+.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g-~~v~~~~ 37 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAG-YRVAIHY 37 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEc
Confidence 579999999999999999998764 5665554
No 370
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.17 E-value=3.1 Score=38.73 Aligned_cols=31 Identities=23% Similarity=0.143 Sum_probs=25.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+++++.|.++. .+++.+.
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G-~~V~~~~ 36 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG-ARVVVTD 36 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999999999999998764 4655553
No 371
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=79.13 E-value=2.5 Score=41.88 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=39.0
Q ss_pred EEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc--CCccc--cccccCccccCCCccc-ccCcccCCCCCEEEEcCCC
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK--AGQSI--GSVFPHLISQDLPTMV-AVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~--~G~~i--~~v~p~l~~~~~~~~~-~~~~~~~~~vDvVF~al~~ 139 (406)
|+|+| .|+||..++-.|+..+.. |++.+--... .|... ......+. .. .+. .-+.+++.++|+||.|.+.
T Consensus 1 i~iiG-aG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~--~~-~i~~~~~~~~l~~aDiVIitag~ 76 (300)
T cd00300 1 ITIIG-AGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLA--TG-TIVRGGDYADAADADIVVITAGA 76 (300)
T ss_pred CEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccC--CC-eEEECCCHHHhCCCCEEEEcCCC
Confidence 58999 599999999988876654 4555532221 22211 11111110 10 111 1123456899999999874
No 372
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.86 E-value=4.2 Score=40.39 Aligned_cols=74 Identities=14% Similarity=0.272 Sum_probs=49.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC---CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp---~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
.+|.|+|.+..||+=|..+|.++- +..+...-++. .++. +...++|+|+.|.|..
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------------~nl~-------~~~~~ADIvIsAvGkp 215 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------------KNLK-------KECLEADIIIAALGQP 215 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------------CCHH-------HHHhhCCEEEEccCCc
Confidence 589999999999999999998753 34443332221 1111 1125789999999854
Q ss_pred chHHHHh--hCCCCCEEEEcCCcc
Q 015441 141 TTQEIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 141 ~s~~~~~--~l~~G~~VIDlSa~f 162 (406)
. +.+ .+..|..|||.+-.+
T Consensus 216 ~---~i~~~~vk~gavVIDvGin~ 236 (293)
T PRK14185 216 E---FVKADMVKEGAVVIDVGTTR 236 (293)
T ss_pred C---ccCHHHcCCCCEEEEecCcc
Confidence 2 232 256799999987643
No 373
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=78.81 E-value=2.5 Score=40.90 Aligned_cols=29 Identities=28% Similarity=0.527 Sum_probs=23.7
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
||.|.||||++|+.|++.|.++. .+++.+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g-~~V~~~ 29 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG-HEVVVL 29 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC-CeEEEE
Confidence 58999999999999999998764 355544
No 374
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.69 E-value=4.5 Score=40.24 Aligned_cols=74 Identities=11% Similarity=0.258 Sum_probs=48.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC---CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp---~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
.+|.|+|.+..||+=|..+|.++- +..+...-++. .++ .+...++|+|+.|.|..
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T---------------~~l-------~~~~~~ADIvVsAvGkp 219 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS---------------KNL-------ARHCQRADILIVAAGVP 219 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC---------------cCH-------HHHHhhCCEEEEecCCc
Confidence 589999999999999999998641 34443332211 111 11225789999998753
Q ss_pred chHHHHh--hCCCCCEEEEcCCcc
Q 015441 141 TTQEIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 141 ~s~~~~~--~l~~G~~VIDlSa~f 162 (406)
. +.+ .+..|..|||.+-.+
T Consensus 220 ~---~i~~~~ik~gavVIDvGin~ 240 (297)
T PRK14168 220 N---LVKPEWIKPGATVIDVGVNR 240 (297)
T ss_pred C---ccCHHHcCCCCEEEecCCCc
Confidence 2 232 256799999987554
No 375
>PRK12367 short chain dehydrogenase; Provisional
Probab=78.68 E-value=4.5 Score=38.58 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=25.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|.+|+++.+.|..+. .+++.+.
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G-~~Vi~~~ 45 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKG-AKVIGLT 45 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 479999999999999999998764 4665554
No 376
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=78.61 E-value=3.2 Score=38.98 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=25.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++|.|.||+|.+|..+++.|.++. .+++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G-~~V~~~~ 31 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATG 31 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEEE
Confidence 379999999999999999998764 4665553
No 377
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.53 E-value=7.1 Score=38.63 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=48.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCC--Ccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP--HGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~--~~~ 141 (406)
.+|.|+|.+..+|+-|..+|.+. ...++..-++. .++ .+...++|++|.|.| +.+
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~-~atVtv~hs~T---------------~~l-------~~~~~~ADIvi~avG~p~~v 216 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLA-GCTVTVCHRFT---------------KNL-------RHHVRNADLLVVAVGKPGFI 216 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHC-CCeEEEEECCC---------------CCH-------HHHHhhCCEEEEcCCCcccc
Confidence 58999999999999999999864 34444433211 111 112357899999995 333
Q ss_pred hHHHHhhCCCCCEEEEcCCc
Q 015441 142 TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~ 161 (406)
..++ +..|..|||.+-.
T Consensus 217 ~~~~---vk~gavVIDvGin 233 (285)
T PRK10792 217 PGEW---IKPGAIVIDVGIN 233 (285)
T ss_pred cHHH---cCCCcEEEEcccc
Confidence 3332 4679999998754
No 378
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=78.52 E-value=3.5 Score=38.06 Aligned_cols=32 Identities=25% Similarity=0.100 Sum_probs=25.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
.+|.|.||||.+|+++++.|.+. ..+++.+..
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~-G~~v~~~~~ 37 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQ-GANVVINYA 37 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCEEEEEeC
Confidence 47999999999999999999865 356655543
No 379
>PRK06924 short chain dehydrogenase; Provisional
Probab=78.50 E-value=3.4 Score=38.66 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=25.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+.+++.|.++. .+++.+.
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g-~~V~~~~ 32 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKG-THVISIS 32 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcC-CEEEEEe
Confidence 479999999999999999998764 4666554
No 380
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=78.48 E-value=3.9 Score=40.13 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=52.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEecc---------------CcCCc--------cccccccCccccCCCccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQ--------SIGSVFPHLISQDLPTMV 120 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~---------------~~~G~--------~i~~v~p~l~~~~~~~~~ 120 (406)
.+|+|+| .|-+|.++++.|.....-++..+-.+ ...|+ .+...+|......+..
T Consensus 31 s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~-- 107 (268)
T PRK15116 31 AHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD-- 107 (268)
T ss_pred CCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec--
Confidence 5799999 88999999999986443444444221 11121 1222233221111110
Q ss_pred ccCc----ccC-CCCCEEEEcCCCcchHHHH-hhC-CCCCEEEEcCCc
Q 015441 121 AVKD----ADF-SNVDAVFCCLPHGTTQEII-KGL-PKSLKIVDLSAD 161 (406)
Q Consensus 121 ~~~~----~~~-~~vDvVF~al~~~~s~~~~-~~l-~~G~~VIDlSa~ 161 (406)
.+++ +.+ .+.|+|+.|.+...++..+ ..+ +.++.+|...++
T Consensus 108 ~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGa 155 (268)
T PRK15116 108 FITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGA 155 (268)
T ss_pred ccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCc
Confidence 1111 112 3689999999876554433 333 568888866554
No 381
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=78.48 E-value=3.3 Score=38.44 Aligned_cols=31 Identities=19% Similarity=0.087 Sum_probs=25.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+.+++.|.++- .+++.+.
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~ 37 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADG-AEVIVVD 37 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999999999999998764 4665554
No 382
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.43 E-value=3.5 Score=38.60 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=25.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
..|.|.||+|.+|+++++.|.++. .+++.+.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g-~~vi~~~ 33 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAG-FDLAIND 33 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 469999999999999999998764 4676654
No 383
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=78.34 E-value=0.78 Score=46.59 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN 85 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~ 85 (406)
...+.|.||||++|+-+++.+..
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~ 27 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVS 27 (423)
T ss_pred eeeEEEEccccccceeeHHHHhh
Confidence 46799999999999999998875
No 384
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=78.30 E-value=3 Score=42.71 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=29.7
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK 99 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~ 99 (406)
+|.+-|||||.|+-|++.|++..+.++.++...++
T Consensus 2 ~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s 36 (382)
T COG3320 2 NVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQS 36 (382)
T ss_pred eEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCC
Confidence 68999999999999999888777789999885433
No 385
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=78.03 E-value=3.6 Score=38.70 Aligned_cols=94 Identities=20% Similarity=0.327 Sum_probs=50.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEecc--------------CcCCc--------cccccccCccccCCCcccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD--------------RKAGQ--------SIGSVFPHLISQDLPTMVA 121 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~--------------~~~G~--------~i~~v~p~l~~~~~~~~~~ 121 (406)
.+|+|+| .|-+|.+++..|.....-+++.+-.+ .+.|+ ++....|........ ..
T Consensus 29 ~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~--~~ 105 (212)
T PRK08644 29 AKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHN--EK 105 (212)
T ss_pred CCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEe--ee
Confidence 5899999 67789999999986544445444322 11221 111112211110000 01
Q ss_pred cCc----ccCCCCCEEEEcCCCcchHHHH-hhC-CC-CCEEEEcCC
Q 015441 122 VKD----ADFSNVDAVFCCLPHGTTQEII-KGL-PK-SLKIVDLSA 160 (406)
Q Consensus 122 ~~~----~~~~~vDvVF~al~~~~s~~~~-~~l-~~-G~~VIDlSa 160 (406)
+++ +.+.++|+||.|+....++... ..+ .. ++.+|..++
T Consensus 106 i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~ 151 (212)
T PRK08644 106 IDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASG 151 (212)
T ss_pred cCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeeh
Confidence 111 2246899999999887775544 333 44 777774443
No 386
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=77.99 E-value=3.2 Score=38.70 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=25.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|.+|++|++.|.++. .+++.+.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g-~~v~~~~ 32 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAG-ANVVVND 32 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCC-CEEEEEe
Confidence 369999999999999999998764 3666654
No 387
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=77.74 E-value=3.6 Score=38.60 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=25.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|.+|+.+++.|.++.. +++.+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~-~v~~~~ 38 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGA-AVAIAD 38 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-eEEEEe
Confidence 5799999999999999999997754 665543
No 388
>PRK07024 short chain dehydrogenase; Provisional
Probab=77.62 E-value=3.9 Score=38.62 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=26.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.+|.|.||+|.+|+++++.|.++. .+++.+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G-~~v~~~~ 33 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG-ATLGLVA 33 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 4589999999999999999998764 4665554
No 389
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.55 E-value=5 Score=39.63 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=49.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..||+=|..+|.++ ...+...-++. .++. +....+|+|+.|.|..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~-~ATVt~chs~T---------------~dl~-------~~~k~ADIvIsAvGkp--- 212 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNA-KATVTTCHRFT---------------TDLK-------SHTTKADILIVAVGKP--- 212 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC-CCEEEEEcCCC---------------CCHH-------HHhhhcCEEEEccCCc---
Confidence 58999999999999999999864 34443332211 1111 1125789999999854
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
++.+ .+..|..|||.+-.+
T Consensus 213 ~~i~~~~vk~gavVIDvGin~ 233 (282)
T PRK14180 213 NFITADMVKEGAVVIDVGINH 233 (282)
T ss_pred CcCCHHHcCCCcEEEEecccc
Confidence 2332 256799999987654
No 390
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.48 E-value=7 Score=38.69 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=48.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..||+=|..+|.++ +..+...-++ ..++. +...++|+|+.|.|...
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~-~atVt~chs~---------------T~~l~-------~~~~~ADIvIsAvGk~~-- 214 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEM-NATVTLCHSK---------------TQNLP-------SIVRQADIIVGAVGKPE-- 214 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC-CCEEEEeCCC---------------CCCHH-------HHHhhCCEEEEeCCCcC--
Confidence 58999999999999999999864 2344333221 11111 11257899999998542
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
+.. .+..|..|||.+-.+
T Consensus 215 -~i~~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 215 -FIKADWISEGAVLLDAGYNP 234 (284)
T ss_pred -ccCHHHcCCCCEEEEecCcc
Confidence 232 256799999987654
No 391
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.44 E-value=5.3 Score=39.49 Aligned_cols=73 Identities=15% Similarity=0.258 Sum_probs=48.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..||+=|..+|.++ +..++..-++. .++. +....+|+|+.|.|...
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~-~atVtichs~T---------------~~l~-------~~~~~ADIvI~AvG~p~-- 211 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNH-DATVTIAHSKT---------------RNLK-------QLTKEADILVVAVGVPH-- 211 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHC-CCEEEEECCCC---------------CCHH-------HHHhhCCEEEEccCCcC--
Confidence 58999999999999999999865 34443332211 1111 11257899999998542
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
+.. .+..|..|||.+-.+
T Consensus 212 -~i~~~~vk~GavVIDvGin~ 231 (282)
T PRK14169 212 -FIGADAVKPGAVVIDVGISR 231 (282)
T ss_pred -ccCHHHcCCCcEEEEeeccc
Confidence 232 256799999987643
No 392
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.43 E-value=5.8 Score=39.49 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=47.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC---CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp---~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
.+|.|+|.+..||+=|..+|.++- +..+...-++ ..++ ++...++|+|+.|.|..
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------------T~~l-------~~~~~~ADIvIsAvGkp 215 (297)
T PRK14167 158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR---------------TDDL-------AAKTRRADIVVAAAGVP 215 (297)
T ss_pred CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC---------------CCCH-------HHHHhhCCEEEEccCCc
Confidence 589999999999999999998641 3333322111 1111 11225789999998753
Q ss_pred chHHHHh--hCCCCCEEEEcCCcc
Q 015441 141 TTQEIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 141 ~s~~~~~--~l~~G~~VIDlSa~f 162 (406)
. +.. .++.|..|||.+-.+
T Consensus 216 ~---~i~~~~ik~gaiVIDvGin~ 236 (297)
T PRK14167 216 E---LIDGSMLSEGATVIDVGINR 236 (297)
T ss_pred C---ccCHHHcCCCCEEEEccccc
Confidence 2 232 256799999977543
No 393
>PRK12828 short chain dehydrogenase; Provisional
Probab=77.30 E-value=4 Score=37.52 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=25.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||||.+|+.+++.|.++ ..+++.+.
T Consensus 8 k~vlItGatg~iG~~la~~l~~~-G~~v~~~~ 38 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAAR-GARVALIG 38 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHC-CCeEEEEe
Confidence 47999999999999999999876 45655554
No 394
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=77.23 E-value=2.7 Score=41.90 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=23.2
Q ss_pred CCCCCEEEEcCCCcchHHHHhhC--CCCCEEEE
Q 015441 127 FSNVDAVFCCLPHGTTQEIIKGL--PKSLKIVD 157 (406)
Q Consensus 127 ~~~vDvVF~al~~~~s~~~~~~l--~~G~~VID 157 (406)
+.++|+||+|+++..++-+...+ ..++.+|+
T Consensus 106 i~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~ 138 (307)
T cd01486 106 IKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN 138 (307)
T ss_pred HhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE
Confidence 47899999999998887555443 45777776
No 395
>PRK05993 short chain dehydrogenase; Provisional
Probab=77.10 E-value=4.2 Score=39.03 Aligned_cols=33 Identities=21% Similarity=0.144 Sum_probs=26.2
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|+.+|.|.||+|.+|+.+++.|.++ ..+++.+.
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~-G~~Vi~~~ 35 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSD-GWRVFATC 35 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEE
Confidence 4457999999999999999999875 35665553
No 396
>PRK08177 short chain dehydrogenase; Provisional
Probab=76.83 E-value=4.3 Score=37.49 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=25.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+.+++.|..+. .+++.+.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~ 32 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERG-WQVTATV 32 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCC-CEEEEEe
Confidence 579999999999999999999764 4666654
No 397
>PRK07454 short chain dehydrogenase; Provisional
Probab=76.79 E-value=4.3 Score=37.77 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=26.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+|.++.|.|++|.+|+.+++.|.++- .+++.+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~ 37 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAG-WDLALVA 37 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 34679999999999999999998764 3555543
No 398
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=76.73 E-value=5.3 Score=37.16 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=47.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC-CCCCEEE-EcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVF-CCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF-~al~~~~ 141 (406)
++|+|+| .|.+|+.+.+.|.+.. .+++ +.+++. ..+......+.... + +. ++.+ .++|+++ ++.+.-+
T Consensus 29 k~v~I~G-~G~vG~~~A~~L~~~G-~~Vv-v~D~~~--~~~~~~~~~~g~~~---v-~~-~~l~~~~~Dv~vp~A~~~~I 98 (200)
T cd01075 29 KTVAVQG-LGKVGYKLAEHLLEEG-AKLI-VADINE--EAVARAAELFGATV---V-AP-EEIYSVDADVFAPCALGGVI 98 (200)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEE-EEcCCH--HHHHHHHHHcCCEE---E-cc-hhhccccCCEEEeccccccc
Confidence 5799999 7999999999998764 4776 444321 11111100111100 1 11 2223 3799999 4555666
Q ss_pred hHHHHhhCCCCCEEEEc
Q 015441 142 TQEIIKGLPKSLKIVDL 158 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDl 158 (406)
+.+.++.+.. ..|++-
T Consensus 99 ~~~~~~~l~~-~~v~~~ 114 (200)
T cd01075 99 NDDTIPQLKA-KAIAGA 114 (200)
T ss_pred CHHHHHHcCC-CEEEEC
Confidence 7777776643 245653
No 399
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=76.48 E-value=6.5 Score=42.09 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=52.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc--------CCccccccccCccccC-CCc--ccccCcc-------
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--------AGQSIGSVFPHLISQD-LPT--MVAVKDA------- 125 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~--------~G~~i~~v~p~l~~~~-~~~--~~~~~~~------- 125 (406)
-||+|+| .|-+|...+..+...-. +++.+ +.+. .|-....+.+ ...+ ... ....+++
T Consensus 166 ~kVlViG-aG~iGL~Ai~~Ak~lGA-~V~a~-D~~~~rle~aeslGA~~v~i~~--~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 166 AKVLVIG-AGVAGLAAIGAAGSLGA-IVRAF-DTRPEVAEQVESMGAEFLELDF--EEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHCCC-EEEEE-eCCHHHHHHHHHcCCeEEEecc--ccccccccchhhhcchhHHHHHHH
Confidence 5899999 99999999998876654 54444 3322 1221110000 0000 000 0000000
Q ss_pred ----cCCCCCEEEEcCCCcc-------hHHHHhhCCCCCEEEEcCCc
Q 015441 126 ----DFSNVDAVFCCLPHGT-------TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 126 ----~~~~vDvVF~al~~~~-------s~~~~~~l~~G~~VIDlSa~ 161 (406)
...++|+||.|.+... +++..+....|.+|+|++.+
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccC
Confidence 1246999999998532 45555667789999999875
No 400
>PRK06482 short chain dehydrogenase; Provisional
Probab=76.39 E-value=4.4 Score=38.68 Aligned_cols=32 Identities=16% Similarity=0.013 Sum_probs=25.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.+|.|.||+|.+|+.+++.|.+.. .++..+.
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g-~~v~~~~ 33 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARG-DRVAATV 33 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 3579999999999999999998653 3554443
No 401
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=76.35 E-value=2.5 Score=41.63 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=22.2
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|+|+|| |++|..+..+|..+...+++.+-
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~D 29 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLD 29 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEe
Confidence 689996 99999999988865433666653
No 402
>PRK08267 short chain dehydrogenase; Provisional
Probab=76.35 E-value=3.8 Score=38.64 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=25.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|.++.|.||||.+|+.+++.|++.. .+++.+.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G-~~V~~~~ 32 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEG-WRVGAYD 32 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC-CeEEEEe
Confidence 3579999999999999999998764 4665554
No 403
>PRK08251 short chain dehydrogenase; Provisional
Probab=76.34 E-value=4.4 Score=37.79 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=25.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|.+|+.+++.|.++. .+++.+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g-~~v~~~~ 33 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKG-RDLALCA 33 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC-CEEEEEe
Confidence 579999999999999999999775 4665553
No 404
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.27 E-value=13 Score=37.46 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=24.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.||+|+| +|.+|..+...++.+ .++++.+.
T Consensus 8 ~~VaVIG-aG~MG~giA~~~a~a-G~~V~l~D 37 (321)
T PRK07066 8 KTFAAIG-SGVIGSGWVARALAH-GLDVVAWD 37 (321)
T ss_pred CEEEEEC-cCHHHHHHHHHHHhC-CCeEEEEe
Confidence 5799999 899999999998865 45665553
No 405
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=76.11 E-value=3.3 Score=42.85 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=41.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccc--cccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS--VFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~--v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
+||.|+|+ |.+|+.+.+.|... ..+++.+......-+.+.. ..+.+.+ +......+....+.++|.|+.|++...
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~-g~~v~vid~~~~~~~~~~~~~~~~~~~g-d~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGE-NNDVTVIDTDEERLRRLQDRLDVRTVVG-NGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHhhcCEEEEEe-CCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 37999995 99999999999864 3566666432111111111 0011112 111111122223568999999998654
Q ss_pred h
Q 015441 142 T 142 (406)
Q Consensus 142 s 142 (406)
.
T Consensus 78 ~ 78 (453)
T PRK09496 78 T 78 (453)
T ss_pred H
Confidence 4
No 406
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.90 E-value=5.3 Score=39.50 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=48.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..||+=|..+|.+. +..++..-++. .++ .+....+|+|+.|.|...
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~-~atVt~chs~T---------------~nl-------~~~~~~ADIvIsAvGkp~-- 212 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNA-GATVSVCHIKT---------------KDL-------SLYTRQADLIIVAAGCVN-- 212 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC-CCEEEEeCCCC---------------CCH-------HHHHhhCCEEEEcCCCcC--
Confidence 58999999999999999999864 34443332211 111 111257899999998542
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
+.. .+..|..|||.+-.+
T Consensus 213 -~i~~~~vk~GavVIDvGin~ 232 (282)
T PRK14166 213 -LLRSDMVKEGVIVVDVGINR 232 (282)
T ss_pred -ccCHHHcCCCCEEEEecccc
Confidence 232 246799999987543
No 407
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=75.88 E-value=4 Score=40.91 Aligned_cols=93 Identities=16% Similarity=0.281 Sum_probs=50.6
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEec---------------cCcCCcc--------ccccccCccccCCC-ccc
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTA---------------DRKAGQS--------IGSVFPHLISQDLP-TMV 120 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s---------------~~~~G~~--------i~~v~p~l~~~~~~-~~~ 120 (406)
||.|+| .|-+|.|+++.|.....-++..+-. ..+.|+. +.+..|........ .+.
T Consensus 1 kVlIVG-aGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVG-AGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEEC-CCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 689999 5888999999887433233333321 1223321 12222222111000 011
Q ss_pred c--cCcccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEEc
Q 015441 121 A--VKDADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDL 158 (406)
Q Consensus 121 ~--~~~~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VIDl 158 (406)
+ .+.+.|.+.|+|+.|+.+..++.++-. . ..++.+||.
T Consensus 80 ~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~ 121 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIES 121 (312)
T ss_pred CccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 1 011234789999999998877776654 2 567888874
No 408
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.73 E-value=6.7 Score=38.83 Aligned_cols=74 Identities=15% Similarity=0.275 Sum_probs=49.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcC---CCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH---PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h---p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
.+|.|+|.+..||+=|..+|.+. .+..+....++. .++ .+....+|+|+.|.+..
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---------------~~l-------~~~~~~ADIVI~AvG~p 215 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---------------PDL-------AEECREADFLFVAIGRP 215 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---------------hhH-------HHHHHhCCEEEEecCCC
Confidence 58999999999999999999862 345554443321 011 11235789999998743
Q ss_pred --chHHHHhhCCCCCEEEEcCCcc
Q 015441 141 --TTQEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 141 --~s~~~~~~l~~G~~VIDlSa~f 162 (406)
++.++ +..|..|||.+-++
T Consensus 216 ~li~~~~---vk~GavVIDVGi~~ 236 (286)
T PRK14184 216 RFVTADM---VKPGAVVVDVGINR 236 (286)
T ss_pred CcCCHHH---cCCCCEEEEeeeec
Confidence 22222 46799999987654
No 409
>PLN02494 adenosylhomocysteinase
Probab=75.71 E-value=8.6 Score=40.76 Aligned_cols=84 Identities=6% Similarity=0.070 Sum_probs=49.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc--
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-- 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-- 141 (406)
.+|+|+| .|.+|+.+++.+..+- ++++.+. +.. .+...... .+... + .+ ++.+.++|+||.|++...
T Consensus 255 KtVvViG-yG~IGr~vA~~aka~G-a~VIV~e-~dp-~r~~eA~~---~G~~v--v-~l-eEal~~ADVVI~tTGt~~vI 323 (477)
T PLN02494 255 KVAVICG-YGDVGKGCAAAMKAAG-ARVIVTE-IDP-ICALQALM---EGYQV--L-TL-EDVVSEADIFVTTTGNKDII 323 (477)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEe-CCc-hhhHHHHh---cCCee--c-cH-HHHHhhCCEEEECCCCccch
Confidence 5799999 9999999999998663 4654442 211 11111000 01010 1 11 123457899999988542
Q ss_pred hHHHHhhCCCCCEEEEc
Q 015441 142 TQEIIKGLPKSLKIVDL 158 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDl 158 (406)
..+....++.|..+|-.
T Consensus 324 ~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 324 MVDHMRKMKNNAIVCNI 340 (477)
T ss_pred HHHHHhcCCCCCEEEEc
Confidence 35555667788888843
No 410
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.52 E-value=8.5 Score=37.97 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=49.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc--c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--T 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~--~ 141 (406)
.+|.|+|.+..+|+-|..+|.+.. ..+....++. .++ .+...++|+|+.|.|.. +
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~-atVtv~hs~t---------------~~L-------~~~~~~ADIvI~Avgk~~lv 209 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNAD-ATVTICHSKT---------------ENL-------KAELRQADILVSAAGKAGFI 209 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCC-CeeEEEecCh---------------hHH-------HHHHhhCCEEEECCCccccc
Confidence 589999999999999999998653 3444443321 011 12235789999999733 2
Q ss_pred hHHHHhhCCCCCEEEEcCCcc
Q 015441 142 TQEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~f 162 (406)
+.++ ++.|..|||.+-++
T Consensus 210 ~~~~---vk~GavVIDVgi~~ 227 (279)
T PRK14178 210 TPDM---VKPGATVIDVGINQ 227 (279)
T ss_pred CHHH---cCCCcEEEEeeccc
Confidence 2222 57799999998765
No 411
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=75.51 E-value=3.3 Score=43.03 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=25.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
..+|.|.||+|.+|+++++.|.+.. .+++.+.
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~G-~~Vi~l~ 209 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQG-AKVVALT 209 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 3579999999999999999998653 4666654
No 412
>PRK07102 short chain dehydrogenase; Provisional
Probab=75.50 E-value=4.5 Score=37.74 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=25.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|.+|.|.||+|.+|+.+++.|++.- .+++.+.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G-~~Vi~~~ 32 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAG-ARLYLAA 32 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcC-CEEEEEe
Confidence 3579999999999999999998753 4555553
No 413
>PRK12827 short chain dehydrogenase; Provisional
Probab=75.45 E-value=3 Score=38.72 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=25.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+++.|.||+|.+|+.+++.|.++. .+++.+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g-~~v~~~~ 37 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADG-ADVIVLD 37 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CeEEEEc
Confidence 579999999999999999999764 4665554
No 414
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=75.20 E-value=4.8 Score=37.72 Aligned_cols=85 Identities=7% Similarity=0.123 Sum_probs=49.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcc-cccCcccCCCCCEEEEcCCCc-c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTM-VAVKDADFSNVDAVFCCLPHG-T 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~-~~~~~~~~~~vDvVF~al~~~-~ 141 (406)
.||.|+| .|.+|..-++.|.+.. .+++.++.+-. ..+.... ....+... ...+..++.++|+||.|++.. .
T Consensus 10 k~vlVvG-gG~va~rk~~~Ll~~g-a~VtVvsp~~~--~~l~~l~---~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~l 82 (205)
T TIGR01470 10 RAVLVVG-GGDVALRKARLLLKAG-AQLRVIAEELE--SELTLLA---EQGGITWLARCFDADILEGAFLVIAATDDEEL 82 (205)
T ss_pred CeEEEEC-cCHHHHHHHHHHHHCC-CEEEEEcCCCC--HHHHHHH---HcCCEEEEeCCCCHHHhCCcEEEEECCCCHHH
Confidence 4899999 9999999999888754 45655543211 1111100 00011000 112234567899999999876 5
Q ss_pred hHHHHhhC-CCCCEE
Q 015441 142 TQEIIKGL-PKSLKI 155 (406)
Q Consensus 142 s~~~~~~l-~~G~~V 155 (406)
..++.... +.|+.|
T Consensus 83 n~~i~~~a~~~~ilv 97 (205)
T TIGR01470 83 NRRVAHAARARGVPV 97 (205)
T ss_pred HHHHHHHHHHcCCEE
Confidence 55555554 467766
No 415
>PRK12746 short chain dehydrogenase; Provisional
Probab=75.17 E-value=4.6 Score=37.82 Aligned_cols=33 Identities=24% Similarity=0.085 Sum_probs=25.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEecc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD 97 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~ 97 (406)
.+|.|.||+|.+|.++++.|+++. .+++.+..+
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G-~~v~i~~~r 39 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDG-ALVAIHYGR 39 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCC
Confidence 479999999999999999998764 455444333
No 416
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=74.90 E-value=4.1 Score=40.49 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=24.4
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|.|.||+|.+|++|+|.|.++.-.+++.+.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d 30 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFD 30 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEE
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeC
Confidence 679999999999999999976445676664
No 417
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=74.90 E-value=2.8 Score=43.03 Aligned_cols=33 Identities=27% Similarity=0.551 Sum_probs=28.6
Q ss_pred EECcccHHHHHHHHHHHcCCC-ceEEEEeccCcC
Q 015441 68 LLGASGYTGAEIVRLLANHPY-FGIKLMTADRKA 100 (406)
Q Consensus 68 IvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~~ 100 (406)
|+|+||-||++.++.+..||+ +++++++..+..
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~ 34 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNI 34 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECCCCH
Confidence 689999999999999998876 899999876543
No 418
>PRK06180 short chain dehydrogenase; Provisional
Probab=74.78 E-value=5.2 Score=38.34 Aligned_cols=32 Identities=9% Similarity=-0.050 Sum_probs=25.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.+|.|.||+|.+|+.+++.|..+. .+++.+.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~ 35 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAG-HRVVGTV 35 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCc-CEEEEEe
Confidence 3579999999999999999998763 5666554
No 419
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.77 E-value=6 Score=39.14 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=48.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..||+=|..+|.+. +..+...-++. .++ .+....+|+|+.|.|...
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~-~atVt~chs~t---------------~~l-------~~~~~~ADIvI~AvG~p~-- 213 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNE-NATVTYCHSKT---------------KNL-------AELTKQADILIVAVGKPK-- 213 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-CCEEEEEeCCc---------------hhH-------HHHHHhCCEEEEecCCCC--
Confidence 58999999999999999999864 34443332210 111 112357899999997542
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
+.. .+..|..|||.+-.+
T Consensus 214 -~i~~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 214 -LITADMVKEGAVVIDVGVNR 233 (284)
T ss_pred -cCCHHHcCCCCEEEEeeccc
Confidence 332 256799999987653
No 420
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=74.71 E-value=4 Score=41.26 Aligned_cols=93 Identities=11% Similarity=0.137 Sum_probs=52.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC---------------cCCc----------cccccccCccccCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR---------------KAGQ----------SIGSVFPHLISQDLP 117 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~---------------~~G~----------~i~~v~p~l~~~~~~ 117 (406)
..||.|+| .|-+|.+++..|...-.-++..+-.+. ..|+ .+.+..|.+.....
T Consensus 24 ~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~- 101 (339)
T PRK07688 24 EKHVLIIG-AGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI- 101 (339)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE-
Confidence 36899999 588999999999865444555553321 1111 11112222111000
Q ss_pred cccccCc----ccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEEc
Q 015441 118 TMVAVKD----ADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDL 158 (406)
Q Consensus 118 ~~~~~~~----~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VIDl 158 (406)
...+++ +.+.++|+|+.|+....++.++-. . ..++.+|..
T Consensus 102 -~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~ 147 (339)
T PRK07688 102 -VQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYG 147 (339)
T ss_pred -eccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 001111 124689999999998877776543 2 557777743
No 421
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=74.63 E-value=4.2 Score=40.00 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=47.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccC--cccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVK--DADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~--~~~~~~vDvVF~al~~~ 140 (406)
.+|.|+| +|-+|+.++..|.....-+++.+ ++.. ..+.+...+..... .. .+...+ .+.+.++|+|+.|+|.+
T Consensus 128 k~vlIlG-aGGaaraia~aL~~~G~~~I~I~-nR~~~ka~~la~~l~~~~~-~~-~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 128 ERVVQLG-AGGAGAAVAHALLTLGVERLTIF-DVDPARAAALADELNARFP-AA-RATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHcCCCEEEEE-CCCHHHHHHHHHHHHhhCC-Ce-EEEeccchHhhhCCCCEEEECCcCC
Confidence 4799999 67789999999987654455444 4321 11111111000000 00 011111 12346789999999877
Q ss_pred chHH----HH-hhCCCCCEEEEcC
Q 015441 141 TTQE----II-KGLPKSLKIVDLS 159 (406)
Q Consensus 141 ~s~~----~~-~~l~~G~~VIDlS 159 (406)
.... +. ..+..+..|+|+.
T Consensus 204 m~~~~~~~~~~~~l~~~~~v~Div 227 (284)
T PRK12549 204 MAKHPGLPLPAELLRPGLWVADIV 227 (284)
T ss_pred CCCCCCCCCCHHHcCCCcEEEEee
Confidence 5321 11 1234455677654
No 422
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.60 E-value=7.7 Score=38.27 Aligned_cols=72 Identities=14% Similarity=0.292 Sum_probs=47.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..||+=|..+|.+. +..+...-++ ..++. +...++|+|+.|.|..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~-~AtVt~chs~---------------T~~l~-------~~~~~ADIvIsAvGkp--- 212 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNE-NATVTICHSK---------------TKNLK-------EVCKKADILVVAIGRP--- 212 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHC-CCEEEEeCCC---------------CCCHH-------HHHhhCCEEEEcCCCc---
Confidence 58999999999999999999854 3444333221 11111 1124789999999854
Q ss_pred HHHh--hCCCCCEEEEcCCc
Q 015441 144 EIIK--GLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~ 161 (406)
++.. .+..|..|||..-.
T Consensus 213 ~~i~~~~ik~gavVIDvGin 232 (278)
T PRK14172 213 KFIDEEYVKEGAIVIDVGTS 232 (278)
T ss_pred CccCHHHcCCCcEEEEeecc
Confidence 2232 25679999997644
No 423
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.56 E-value=6.5 Score=39.15 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=49.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..||+=|..+|.++ ...+...-++. .++ .+...++|+|+.|.|..
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~-~atVtv~hs~T---------------~~l-------~~~~~~ADIvIsAvGkp--- 212 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAA-NATVTIAHSRT---------------QDL-------ASITREADILVAAAGRP--- 212 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHC-CCEEEEeCCCC---------------CCH-------HHHHhhCCEEEEccCCc---
Confidence 57999999999999999999865 34443332211 111 11125789999999854
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
++.+ .+..|..|||.+-.+
T Consensus 213 ~~i~~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 213 NLIGAEMVKPGAVVVDVGIHR 233 (297)
T ss_pred CccCHHHcCCCCEEEEecccc
Confidence 2332 257799999987654
No 424
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=74.53 E-value=7.3 Score=32.08 Aligned_cols=79 Identities=19% Similarity=0.322 Sum_probs=45.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+| .|-+|..=++.|++.. .+++.++..- ........ +... .. +.+++++|+||.|++.....
T Consensus 8 ~~vlVvG-gG~va~~k~~~Ll~~g-A~v~vis~~~---~~~~~~i~-~~~~------~~-~~~l~~~~lV~~at~d~~~n 74 (103)
T PF13241_consen 8 KRVLVVG-GGPVAARKARLLLEAG-AKVTVISPEI---EFSEGLIQ-LIRR------EF-EEDLDGADLVFAATDDPELN 74 (103)
T ss_dssp -EEEEEE-ESHHHHHHHHHHCCCT-BEEEEEESSE---HHHHTSCE-EEES------S--GGGCTTESEEEE-SS-HHHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCC-CEEEEECCch---hhhhhHHH-HHhh------hH-HHHHhhheEEEecCCCHHHH
Confidence 6899999 7999999999998765 6777776432 00011000 1111 12 24567899999999875543
Q ss_pred H-HHhhC-CCCCEE
Q 015441 144 E-IIKGL-PKSLKI 155 (406)
Q Consensus 144 ~-~~~~l-~~G~~V 155 (406)
+ +.... +.|+.|
T Consensus 75 ~~i~~~a~~~~i~v 88 (103)
T PF13241_consen 75 EAIYADARARGILV 88 (103)
T ss_dssp HHHHHHHHHTTSEE
T ss_pred HHHHHHHhhCCEEE
Confidence 3 43444 356654
No 425
>PRK09134 short chain dehydrogenase; Provisional
Probab=74.50 E-value=5.9 Score=37.38 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=26.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
..++.|.||+|.+|+++++.|.++. .+++.+..
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g-~~v~~~~~ 41 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHG-FDVAVHYN 41 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 3579999999999999999998765 46655543
No 426
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=74.50 E-value=7.4 Score=37.67 Aligned_cols=96 Identities=11% Similarity=0.079 Sum_probs=52.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccc--ccCccccCCCcccccCc-ccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSV--FPHLISQDLPTMVAVKD-ADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v--~p~l~~~~~~~~~~~~~-~~~~~vDvVF~al~~~ 140 (406)
-+|.|.|++|.+|+.++++...+- .+++.+.+..+.-..+... ...+...+......+.. ..-.++|+||.|.+..
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~G-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~ 219 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAARG-INVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVGGK 219 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHCC-CeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCCCh
Confidence 479999999999999999877654 4665554422111111100 00001111000000000 0113689999999977
Q ss_pred chHHHHhhCCCCCEEEEcCC
Q 015441 141 TTQEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 141 ~s~~~~~~l~~G~~VIDlSa 160 (406)
...+..+.+..+.++|+++.
T Consensus 220 ~~~~~~~~l~~~g~~v~~g~ 239 (324)
T cd08292 220 LAGELLSLLGEGGTLVSFGS 239 (324)
T ss_pred hHHHHHHhhcCCcEEEEEec
Confidence 66666666766666776653
No 427
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.26 E-value=5 Score=37.38 Aligned_cols=32 Identities=25% Similarity=0.177 Sum_probs=25.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
.++.|.||+|.+|+++++.|.++. .+++.+..
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g-~~v~~~~~ 36 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEG-YDIAVNYA 36 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcC
Confidence 479999999999999999999874 45554433
No 428
>PRK07578 short chain dehydrogenase; Provisional
Probab=74.25 E-value=4.8 Score=36.41 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=24.7
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++.|.||+|.+|+++.+.|.++ .+++.+.
T Consensus 2 ~vlItGas~giG~~la~~l~~~--~~vi~~~ 30 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR--HEVITAG 30 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc--CcEEEEe
Confidence 7999999999999999999877 5665554
No 429
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=74.21 E-value=4.4 Score=40.21 Aligned_cols=29 Identities=28% Similarity=0.547 Sum_probs=23.5
Q ss_pred cccCCccEEEEECcccHHHHHHHHHHHcC
Q 015441 58 QKSEKQVRIGLLGASGYTGAEIVRLLANH 86 (406)
Q Consensus 58 ~~~~~~ikVaIvGATG~vG~eLlrlL~~h 86 (406)
..+...+||.|.||.|+||..|++-|...
T Consensus 22 ~~p~~~lrI~itGgaGFIgSHLvdkLm~e 50 (350)
T KOG1429|consen 22 VKPSQNLRILITGGAGFIGSHLVDKLMTE 50 (350)
T ss_pred ccCCCCcEEEEecCcchHHHHHHHHHHhc
Confidence 33444489999999999999999988743
No 430
>PRK07904 short chain dehydrogenase; Provisional
Probab=74.15 E-value=6 Score=37.59 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=26.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+.+++.|.++...+++.+.
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~ 40 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAA 40 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEe
Confidence 47999999999999999999887556776654
No 431
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=74.13 E-value=5.1 Score=38.34 Aligned_cols=101 Identities=13% Similarity=0.163 Sum_probs=54.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEecc---------------CcCCc--------cccccccCccccCCCc-c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQ--------SIGSVFPHLISQDLPT-M 119 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~---------------~~~G~--------~i~~v~p~l~~~~~~~-~ 119 (406)
.||+|+| -|-+|.++++.|.....-+++.+-.+ ...|+ ++....|+.....+.. +
T Consensus 12 ~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~i 90 (231)
T cd00755 12 AHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFL 90 (231)
T ss_pred CCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 5799999 78889999999986554455555321 12232 1222333322111110 0
Q ss_pred cccC-cccC-CCCCEEEEcCCCcchHHHHh-hC-CCCCEEEEcCC-cccCC
Q 015441 120 VAVK-DADF-SNVDAVFCCLPHGTTQEIIK-GL-PKSLKIVDLSA-DFRLR 165 (406)
Q Consensus 120 ~~~~-~~~~-~~vDvVF~al~~~~s~~~~~-~l-~~G~~VIDlSa-~fRl~ 165 (406)
...+ .+.+ .+.|+|+.|.....++..+- .+ ..++++|...+ .-|++
T Consensus 91 ~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~d 141 (231)
T cd00755 91 TPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLD 141 (231)
T ss_pred CHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCC
Confidence 0000 1112 36899999998776655443 33 56788886433 33444
No 432
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=73.85 E-value=7.7 Score=36.02 Aligned_cols=95 Identities=13% Similarity=0.045 Sum_probs=49.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccc--cCccccCCCcccccCcccCCCCCEEEEcCCC-c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF--PHLISQDLPTMVAVKDADFSNVDAVFCCLPH-G 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~--p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~-~ 140 (406)
-+|.|.|+.| +|+.+++++.... .++..+......-+.+.... ..+...+......+......++|++|.|.+. .
T Consensus 136 ~~vli~g~~~-~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~ 213 (271)
T cd05188 136 DTVLVLGAGG-VGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE 213 (271)
T ss_pred CEEEEECCCH-HHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHH
Confidence 4799999999 9999999877554 56655543221101111000 0000000000000000012468999999987 4
Q ss_pred chHHHHhhCCCCCEEEEcCC
Q 015441 141 TTQEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 141 ~s~~~~~~l~~G~~VIDlSa 160 (406)
......+.+..+.++++++.
T Consensus 214 ~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 214 TLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred HHHHHHHhcccCCEEEEEcc
Confidence 44445555666666676654
No 433
>PRK07074 short chain dehydrogenase; Provisional
Probab=73.84 E-value=5.3 Score=37.52 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=25.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||||.+|+.+++.|.++- .+++.+.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g-~~v~~~~ 33 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAG-DRVLALD 33 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999999999999998653 5665554
No 434
>PLN02858 fructose-bisphosphate aldolase
Probab=73.81 E-value=5.8 Score=47.44 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=51.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCccc-CCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDAD-FSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~-~~~vDvVF~al~~~~ 141 (406)
.||++|| .|..|..+.+-|..+. +++... +++. .-..+.+ . +.. .. . ++.+ ..++|+||.|++...
T Consensus 5 ~~IGfIG-LG~MG~~mA~~L~~~G-~~v~v~-dr~~~~~~~l~~----~-Ga~--~~-~-s~~e~a~~advVi~~l~~~~ 72 (1378)
T PLN02858 5 GVVGFVG-LDSLSFELASSLLRSG-FKVQAF-EISTPLMEKFCE----L-GGH--RC-D-SPAEAAKDAAALVVVLSHPD 72 (1378)
T ss_pred CeEEEEc-hhHHHHHHHHHHHHCC-CeEEEE-cCCHHHHHHHHH----c-CCe--ec-C-CHHHHHhcCCEEEEEcCChH
Confidence 4799999 9999999999888653 455544 3321 1111111 0 101 01 1 1222 357999999999876
Q ss_pred hHHHH--------hhCCCCCEEEEcCCc
Q 015441 142 TQEII--------KGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~--------~~l~~G~~VIDlSa~ 161 (406)
..+-+ +.+..|..|||.|.-
T Consensus 73 ~v~~V~~g~~g~~~~l~~g~iivd~STi 100 (1378)
T PLN02858 73 QVDDVFFGDEGAAKGLQKGAVILIRSTI 100 (1378)
T ss_pred HHHHHHhchhhHHhcCCCcCEEEECCCC
Confidence 64422 123457889999864
No 435
>PLN02996 fatty acyl-CoA reductase
Probab=73.66 E-value=5.4 Score=42.32 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=25.7
Q ss_pred cEEEEECcccHHHHHHHHHHH-cCCCc-eEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLA-NHPYF-GIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~-~hp~~-elv~l~ 95 (406)
.+|.|-||||++|+.|++.|+ ..|++ ++.++.
T Consensus 12 k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~Lv 45 (491)
T PLN02996 12 KTILVTGATGFLAKIFVEKILRVQPNVKKLYLLL 45 (491)
T ss_pred CeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 469999999999999999766 45665 566665
No 436
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.54 E-value=7.1 Score=38.67 Aligned_cols=74 Identities=22% Similarity=0.372 Sum_probs=48.9
Q ss_pred cEEEEECcccHHHHHHHHHHHc-CC--CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLAN-HP--YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~-hp--~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
.+|.|+|.+..||+=|.-+|.+ ++ +..++..-++ ..++ .+....+|+|+.|.|..
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------------T~~l-------~~~~~~ADIvV~AvG~p 211 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------------SENL-------TEILKTADIIIAAIGVP 211 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------------CCCH-------HHHHhhCCEEEEccCCc
Confidence 5899999999999999999985 44 3333322111 1111 11235789999999854
Q ss_pred chHHHHh--hCCCCCEEEEcCCcc
Q 015441 141 TTQEIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 141 ~s~~~~~--~l~~G~~VIDlSa~f 162 (406)
.+.+ .++.|..|||.+-.+
T Consensus 212 ---~~i~~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 212 ---LFIKEEMIAEKAVIVDVGTSR 232 (287)
T ss_pred ---CccCHHHcCCCCEEEEecccc
Confidence 2332 256799999987654
No 437
>PLN02477 glutamate dehydrogenase
Probab=73.51 E-value=9.8 Score=39.61 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=52.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-----cCCccccccccCc--cc--cCCCcccccCccc-C-CCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-----KAGQSIGSVFPHL--IS--QDLPTMVAVKDAD-F-SNVD 131 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-----~~G~~i~~v~p~l--~~--~~~~~~~~~~~~~-~-~~vD 131 (406)
..+|+|.| .|-||+.++++|.+. ...++++++.+ ..|-.+..+.... .+ ..++....++.++ | .++|
T Consensus 206 g~~VaIqG-fGnVG~~~A~~L~e~-GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~D 283 (410)
T PLN02477 206 GQTFVIQG-FGNVGSWAAQLIHEK-GGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPCD 283 (410)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc-CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceecccc
Confidence 36899999 999999999999875 47898887643 1222222110000 00 0111111122222 2 4899
Q ss_pred EEEEc-CCCcchHHHHhhCCCCCEEE
Q 015441 132 AVFCC-LPHGTTQEIIKGLPKSLKIV 156 (406)
Q Consensus 132 vVF~a-l~~~~s~~~~~~l~~G~~VI 156 (406)
+.+-| ++..+..+.++.+ ++++|
T Consensus 284 vliP~Al~~~I~~~na~~i--~ak~I 307 (410)
T PLN02477 284 VLIPAALGGVINKENAADV--KAKFI 307 (410)
T ss_pred EEeeccccccCCHhHHHHc--CCcEE
Confidence 87765 5667777777765 34555
No 438
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.13 E-value=6.9 Score=38.72 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=48.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..+|+-+..+|.+. ...+...-++. .++ .+...++|+|+.|.|...
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~-gAtVtv~hs~t---------------~~l-------~~~~~~ADIvV~AvG~p~-- 212 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNA-GASVSVCHILT---------------KDL-------SFYTQNADIVCVGVGKPD-- 212 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHC-CCEEEEEeCCc---------------HHH-------HHHHHhCCEEEEecCCCC--
Confidence 58999999999999999999864 34443332211 111 112357899999997542
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
+.+ .+..|..|||.+-.+
T Consensus 213 -~i~~~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 213 -LIKASMVKKGAVVVDIGINR 232 (285)
T ss_pred -cCCHHHcCCCcEEEEeeccc
Confidence 222 246799999987654
No 439
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=73.02 E-value=7 Score=39.70 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=46.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC--ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG--QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G--~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
..+|.|.||+|-||+..+++........+++..+.+... +++...+ -+.-.+....+.+....-.++|+||.|.+..
T Consensus 158 g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~-vvdy~~~~~~e~~kk~~~~~~DvVlD~vg~~ 236 (347)
T KOG1198|consen 158 GKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADE-VVDYKDENVVELIKKYTGKGVDVVLDCVGGS 236 (347)
T ss_pred CCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcE-eecCCCHHHHHHHHhhcCCCccEEEECCCCC
Confidence 357999999999999999988766534555555543211 1111000 0000010011111111124799999999985
Q ss_pred chHHHHhhC
Q 015441 141 TTQEIIKGL 149 (406)
Q Consensus 141 ~s~~~~~~l 149 (406)
........+
T Consensus 237 ~~~~~~~~l 245 (347)
T KOG1198|consen 237 TLTKSLSCL 245 (347)
T ss_pred ccccchhhh
Confidence 444444443
No 440
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=73.01 E-value=17 Score=36.89 Aligned_cols=84 Identities=11% Similarity=0.152 Sum_probs=47.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
..||.|+| +|-+|+..++.|.++..-++ .++.|...-.+++ +.. .+.+ .-+..+|+||+|++...+
T Consensus 174 ~k~vLvIG-aGem~~l~a~~L~~~g~~~i-~v~nRt~~~~~~~---------~~~-~~~~--~~~~~~DvVIs~t~~Tas 239 (338)
T PRK00676 174 KASLLFIG-YSEINRKVAYYLQRQGYSRI-TFCSRQQLTLPYR---------TVV-REEL--SFQDPYDVIFFGSSESAY 239 (338)
T ss_pred CCEEEEEc-ccHHHHHHHHHHHHcCCCEE-EEEcCCccccchh---------hhh-hhhh--hcccCCCEEEEcCCcCCC
Confidence 35899999 69999999999998754444 4555543211111 100 0001 112578999998542222
Q ss_pred ------HHHHhhCCCCCEEEEcCCc
Q 015441 143 ------QEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 143 ------~~~~~~l~~G~~VIDlSa~ 161 (406)
.+..+... ...+||++=+
T Consensus 240 ~~p~i~~~~~~~~~-~r~~iDLAvP 263 (338)
T PRK00676 240 AFPHLSWESLADIP-DRIVFDFNVP 263 (338)
T ss_pred CCceeeHHHHhhcc-CcEEEEecCC
Confidence 22222211 1378999875
No 441
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.95 E-value=7.7 Score=38.38 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=49.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..||+=|..+|.+. +..++..-++. .++ .+....+|+|+.|.|...
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~-~atVtichs~T---------------~~l-------~~~~~~ADIvI~AvG~~~-- 212 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNE-NATVTIAHSRT---------------KDL-------PQVAKEADILVVATGLAK-- 212 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC-CCEEEEeCCCC---------------CCH-------HHHHhhCCEEEEecCCcC--
Confidence 58999999999999999999864 34443332211 111 111257899999998542
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
+.+ .+..|..|||.+-.+
T Consensus 213 -~i~~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 213 -FVKKDYIKPGAIVIDVGMDR 232 (284)
T ss_pred -ccCHHHcCCCCEEEEccCcc
Confidence 332 256799999987654
No 442
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.91 E-value=6.8 Score=38.83 Aligned_cols=72 Identities=14% Similarity=0.233 Sum_probs=47.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..+|+=|..+|.+. +..++..-++. .++. +....+|+|+.|.|..
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~-~ATVtichs~T---------------~~L~-------~~~~~ADIvV~AvGkp--- 213 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKE-NCSVTICHSKT---------------HNLS-------SITSKADIVVAAIGSP--- 213 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHC-CCEEEEeCCCC---------------CCHH-------HHHhhCCEEEEccCCC---
Confidence 57999999999999999999864 34443332211 1111 1125789999999854
Q ss_pred HHHh--hCCCCCEEEEcCCc
Q 015441 144 EIIK--GLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~ 161 (406)
++.. .+..|..|||.+-.
T Consensus 214 ~~i~~~~vk~GavVIDvGin 233 (288)
T PRK14171 214 LKLTAEYFNPESIVIDVGIN 233 (288)
T ss_pred CccCHHHcCCCCEEEEeecc
Confidence 2332 25679999997643
No 443
>PRK07774 short chain dehydrogenase; Provisional
Probab=72.66 E-value=6.1 Score=36.81 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=25.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|++|+.+++.|.++- .+++.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g-~~vi~~~ 37 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREG-ASVVVAD 37 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999999999999998753 4665553
No 444
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=72.63 E-value=6 Score=36.92 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=25.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+++++.|.++. .+++.+.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g-~~v~~~~ 35 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEG-AKVVIAD 35 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CeEEEEe
Confidence 479999999999999999998763 4665554
No 445
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=72.59 E-value=5.8 Score=36.76 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=24.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
..+.|.||+|.+|+.+++.|.++. .+++.+.
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g-~~v~~~~ 32 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEG-YTVAVNY 32 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 469999999999999999998764 4555443
No 446
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.39 E-value=7.4 Score=38.70 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=48.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc--c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--T 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~--~ 141 (406)
.+|.|+|.+..||+=|..+|.++ +..++..-++. .++ .+...++|+|+.|.|.. +
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~-~aTVt~chs~T---------------~~l-------~~~~~~ADIvVsAvGkp~~i 217 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGE-NCTVTTVHSAT---------------RDL-------ADYCSKADILVAAVGIPNFV 217 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhC-CCEEEEeCCCC---------------CCH-------HHHHhhCCEEEEccCCcCcc
Confidence 58999999999999999999864 34444332211 111 11225789999999854 2
Q ss_pred hHHHHhhCCCCCEEEEcCCcc
Q 015441 142 TQEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~f 162 (406)
..++ +..|..|||..-.+
T Consensus 218 ~~~~---ik~gaiVIDVGin~ 235 (294)
T PRK14187 218 KYSW---IKKGAIVIDVGINS 235 (294)
T ss_pred CHHH---cCCCCEEEEecccc
Confidence 2222 46799999976543
No 447
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=72.27 E-value=5.5 Score=40.81 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=52.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc---------------CcCCc--------cccccccCccccCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQ--------SIGSVFPHLISQDLPTM 119 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~---------------~~~G~--------~i~~v~p~l~~~~~~~~ 119 (406)
..||+|+| .|-+|.+++..|.....-++..+-.+ .+.|+ ++....|......+.
T Consensus 41 ~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~-- 117 (370)
T PRK05600 41 NARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR-- 117 (370)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee--
Confidence 35899999 67779999999986554455444321 12221 122222222111110
Q ss_pred cccCc----ccCCCCCEEEEcCCCcchHHHHhhC--CCCCEEEE
Q 015441 120 VAVKD----ADFSNVDAVFCCLPHGTTQEIIKGL--PKSLKIVD 157 (406)
Q Consensus 120 ~~~~~----~~~~~vDvVF~al~~~~s~~~~~~l--~~G~~VID 157 (406)
..+++ +.+.++|+|+.|+.+..++.++..+ ..++..|.
T Consensus 118 ~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~ 161 (370)
T PRK05600 118 ERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVW 161 (370)
T ss_pred eecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 11111 1246899999999998887766442 45776663
No 448
>PRK06914 short chain dehydrogenase; Provisional
Probab=72.26 E-value=6.2 Score=37.63 Aligned_cols=31 Identities=19% Similarity=-0.034 Sum_probs=25.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
..+.|.||+|.+|+.+++.|.++ ..+++.+.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~-G~~V~~~~ 34 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKK-GYLVIATM 34 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhC-CCEEEEEe
Confidence 35899999999999999999876 35666664
No 449
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.11 E-value=10 Score=37.54 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=47.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..+|+=|..+|.+. ...++..-++. .++. +...++|+||.|.|...
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~-~atVtv~hs~T---------------~~l~-------~~~~~ADIvv~AvG~p~-- 219 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNR-NATVSVCHVFT---------------DDLK-------KYTLDADILVVATGVKH-- 219 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHC-CCEEEEEeccC---------------CCHH-------HHHhhCCEEEEccCCcc--
Confidence 58999999999999999999864 34443333211 1111 11257899999887532
Q ss_pred HHHh--hCCCCCEEEEcCCc
Q 015441 144 EIIK--GLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~ 161 (406)
+.+ .+..|..|||.+..
T Consensus 220 -~i~~~~vk~gavVIDvGin 238 (287)
T PRK14176 220 -LIKADMVKEGAVIFDVGIT 238 (287)
T ss_pred -ccCHHHcCCCcEEEEeccc
Confidence 222 25679999998765
No 450
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=72.11 E-value=6.9 Score=38.84 Aligned_cols=82 Identities=20% Similarity=0.328 Sum_probs=43.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-Ccccccc--ccC-ccccCCC-cccc-cC-cccC-CCCCEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSV--FPH-LISQDLP-TMVA-VK-DADF-SNVDAVFC 135 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v--~p~-l~~~~~~-~~~~-~~-~~~~-~~vDvVF~ 135 (406)
+||+|+| .|.+|..+...|.+.. .++. +.+++.. -+.+... ... +.+..++ .+.. .+ .+.. .++|++|+
T Consensus 1 MkI~IiG-aGa~G~ala~~L~~~g-~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliii 77 (326)
T PRK14620 1 MKISILG-AGSFGTAIAIALSSKK-ISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIIL 77 (326)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCC-CeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEE
Confidence 3799999 7999999999998542 3454 3344221 0001110 000 1111111 0000 11 1122 47899999
Q ss_pred cCCCcchHHHHhh
Q 015441 136 CLPHGTTQEIIKG 148 (406)
Q Consensus 136 al~~~~s~~~~~~ 148 (406)
|+++....+.++.
T Consensus 78 avks~~~~~~l~~ 90 (326)
T PRK14620 78 AVPTQQLRTICQQ 90 (326)
T ss_pred EeCHHHHHHHHHH
Confidence 9998877665543
No 451
>PLN02503 fatty acyl-CoA reductase 2
Probab=72.10 E-value=5.1 Score=43.79 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=27.1
Q ss_pred ccEEEEECcccHHHHHHHHHHH-cCCCc-eEEEEec
Q 015441 63 QVRIGLLGASGYTGAEIVRLLA-NHPYF-GIKLMTA 96 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~-~hp~~-elv~l~s 96 (406)
..+|.|.||||++|+.|++.|+ ..|++ ++..+..
T Consensus 119 ~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR 154 (605)
T PLN02503 119 GKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIK 154 (605)
T ss_pred CCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 3689999999999999999777 46665 6666653
No 452
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=71.87 E-value=13 Score=36.17 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=54.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-----cCCcccccc-----ccCccc---cCC----CcccccCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-----KAGQSIGSV-----FPHLIS---QDL----PTMVAVKDA 125 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-----~~G~~i~~v-----~p~l~~---~~~----~~~~~~~~~ 125 (406)
..+|+|-| .|-||+.++++|.+. ...++++++.+ ..|-.+..+ +..-.+ .+. +..+.++++
T Consensus 38 g~~vaIqG-fGnVG~~~a~~L~e~-GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~ 115 (254)
T cd05313 38 GKRVAISG-SGNVAQYAAEKLLEL-GAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGK 115 (254)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCc
Confidence 36899999 999999999999875 47898888632 123221111 000000 000 001112222
Q ss_pred c-C-CCCCEEEEc-CCCcchHHHHhhC-CCCCEEE
Q 015441 126 D-F-SNVDAVFCC-LPHGTTQEIIKGL-PKSLKIV 156 (406)
Q Consensus 126 ~-~-~~vDvVF~a-l~~~~s~~~~~~l-~~G~~VI 156 (406)
+ | .++||.+-| ++..+..+.++.+ +.++++|
T Consensus 116 ~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I 150 (254)
T cd05313 116 KPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYV 150 (254)
T ss_pred chhcCCCcEEEeccccccCCHHHHHHHHHcCCEEE
Confidence 2 3 479987755 5566677777776 4578877
No 453
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=71.83 E-value=6.1 Score=39.47 Aligned_cols=30 Identities=23% Similarity=0.489 Sum_probs=24.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
++|.|.|+.||||...++.|++. ..+++.+
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~-G~~vvV~ 30 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKT-GHEVVVL 30 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHC-CCeEEEE
Confidence 47999999999999999999873 4555554
No 454
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=71.77 E-value=6.6 Score=36.60 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=22.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
.||+|+| .|-+|..++..|.....-+++.+
T Consensus 22 ~~V~IvG-~GglGs~ia~~La~~Gvg~i~lv 51 (200)
T TIGR02354 22 ATVAICG-LGGLGSNVAINLARAGIGKLILV 51 (200)
T ss_pred CcEEEEC-cCHHHHHHHHHHHHcCCCEEEEE
Confidence 5899999 57789999999986543345444
No 455
>PRK09414 glutamate dehydrogenase; Provisional
Probab=71.49 E-value=12 Score=39.30 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=53.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-----cCCcccccccc-------CccccCCCc---ccccCccc-
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-----KAGQSIGSVFP-------HLISQDLPT---MVAVKDAD- 126 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-----~~G~~i~~v~p-------~l~~~~~~~---~~~~~~~~- 126 (406)
..+|+|.| .|-||+.++++|.+. ..+++++++.+ ..|-.+..+.. .+. .++. ...++.++
T Consensus 232 g~rVaIqG-fGnVG~~~A~~L~~~-GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~--~~~~~~~~~~i~~~~i 307 (445)
T PRK09414 232 GKRVVVSG-SGNVAIYAIEKAQQL-GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRIS--EYAEEFGAEYLEGGSP 307 (445)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchh--hhhhhcCCeecCCccc
Confidence 47999999 899999999999875 47898887632 11222221100 010 0100 01112222
Q ss_pred C-CCCCEEEEcCC-CcchHHHHhhC-CCCCEEE
Q 015441 127 F-SNVDAVFCCLP-HGTTQEIIKGL-PKSLKIV 156 (406)
Q Consensus 127 ~-~~vDvVF~al~-~~~s~~~~~~l-~~G~~VI 156 (406)
| .++||.+-|+. ..++.+.+..+ +.+|++|
T Consensus 308 ~~~d~DVliPaAl~n~It~~~a~~i~~~~akiI 340 (445)
T PRK09414 308 WSVPCDIALPCATQNELDEEDAKTLIANGVKAV 340 (445)
T ss_pred cccCCcEEEecCCcCcCCHHHHHHHHHcCCeEE
Confidence 3 37999887765 55556667666 4578877
No 456
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=71.48 E-value=6.7 Score=36.86 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=25.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+.+++.|.++. .+++.+.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g-~~vi~~~ 33 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEG-YRVAVAD 33 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 469999999999999999999764 5666554
No 457
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.28 E-value=7.7 Score=38.33 Aligned_cols=73 Identities=15% Similarity=0.308 Sum_probs=48.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..||+=|..+|.++. ..+...-++ ..++ .+....+|+|+.|.|..
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~-AtVtichs~---------------T~nl-------~~~~~~ADIvI~AvGk~--- 211 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERH-ATVTIAHSR---------------TADL-------AGEVGRADILVAAIGKA--- 211 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCC-CEEEEeCCC---------------CCCH-------HHHHhhCCEEEEecCCc---
Confidence 589999999999999999998653 343332221 1111 11225789999999853
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
++.+ .+..|..|||.+-.+
T Consensus 212 ~~i~~~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 212 ELVKGAWVKEGAVVIDVGMNR 232 (282)
T ss_pred CccCHHHcCCCCEEEEeecee
Confidence 3333 257799999987654
No 458
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.28 E-value=7 Score=36.39 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=24.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|.+|+++++.|.++. .+++...
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G-~~vv~~~ 36 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREG-ARVVVNY 36 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCC-CeEEEEc
Confidence 479999999999999999998765 4555443
No 459
>PRK08643 acetoin reductase; Validated
Probab=70.89 E-value=6.8 Score=36.76 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=25.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|.+|+.+++.|.++. .+++.+.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G-~~v~~~~ 33 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDG-FKVAIVD 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 468999999999999999998764 4665553
No 460
>PRK07814 short chain dehydrogenase; Provisional
Probab=70.77 E-value=7.1 Score=37.03 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=26.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|.+|+++++.|..+. .+++.+.
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G-~~Vi~~~ 41 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAG-ADVLIAA 41 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 469999999999999999998775 4776654
No 461
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=70.74 E-value=7 Score=36.12 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=25.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.++.|.|++|.+|+++++.|.++. .+++.+.
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~g-~~vi~~~ 33 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLNDG-YRVIATY 33 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEe
Confidence 3479999999999999999998764 5665554
No 462
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=70.34 E-value=10 Score=37.46 Aligned_cols=92 Identities=21% Similarity=0.295 Sum_probs=52.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCc-ccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD-ADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~-~~~~~vDvVF~al~~~~s 142 (406)
.+|.|+| +|=+++.++-.|.++-..+++.++...+..+.+...++.... .+. .....+ +...++|+++-|||.+..
T Consensus 127 ~~vlilG-AGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~-~~~-~~~~~~~~~~~~~dliINaTp~Gm~ 203 (283)
T COG0169 127 KRVLILG-AGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA-AVE-AAALADLEGLEEADLLINATPVGMA 203 (283)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc-ccc-cccccccccccccCEEEECCCCCCC
Confidence 5799999 556688888888887666777776433333444443332211 000 011111 111158999999998877
Q ss_pred HHH-H-----hhCCCCCEEEEc
Q 015441 143 QEI-I-----KGLPKSLKIVDL 158 (406)
Q Consensus 143 ~~~-~-----~~l~~G~~VIDl 158 (406)
... . ..+..+..|.|+
T Consensus 204 ~~~~~~~~~~~~l~~~~~v~D~ 225 (283)
T COG0169 204 GPEGDSPVPAELLPKGAIVYDV 225 (283)
T ss_pred CCCCCCCCcHHhcCcCCEEEEe
Confidence 542 1 123455566664
No 463
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=70.20 E-value=6.5 Score=37.32 Aligned_cols=80 Identities=16% Similarity=0.309 Sum_probs=44.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcc-cc--ccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQS-IG--SVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~-i~--~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
+++.|+| -|.+|..+++.|.+.. .+++.+-.....-.. .. .....+.+.. .....+.+..+.++|+++.+++.+
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g-~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~-t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEG-HNVVLIDRDEERVEEFLADELDTHVVIGDA-TDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCC-CceEEEEcCHHHHHHHhhhhcceEEEEecC-CCHHHHHhcCCCcCCEEEEeeCCC
Confidence 4799999 9999999999998653 355566433221111 11 0000011110 001112223357899999999987
Q ss_pred chHHHH
Q 015441 141 TTQEII 146 (406)
Q Consensus 141 ~s~~~~ 146 (406)
...-.+
T Consensus 78 ~~N~i~ 83 (225)
T COG0569 78 EVNSVL 83 (225)
T ss_pred HHHHHH
Confidence 664443
No 464
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=70.04 E-value=12 Score=39.02 Aligned_cols=87 Identities=8% Similarity=0.056 Sum_probs=49.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|+|+| .|.+|+.+++.+... ..+++.+ +... .+...... .+... ... ++.+.++|+||.|++....-
T Consensus 196 k~VvViG-~G~IG~~vA~~ak~~-Ga~ViV~-d~dp-~r~~~A~~---~G~~v---~~l-eeal~~aDVVItaTG~~~vI 264 (406)
T TIGR00936 196 KTVVVAG-YGWCGKGIAMRARGM-GARVIVT-EVDP-IRALEAAM---DGFRV---MTM-EEAAKIGDIFITATGNKDVI 264 (406)
T ss_pred CEEEEEC-CCHHHHHHHHHHhhC-cCEEEEE-eCCh-hhHHHHHh---cCCEe---CCH-HHHHhcCCEEEECCCCHHHH
Confidence 5899999 999999999998865 3465443 2211 11111000 01111 111 22346789999999854332
Q ss_pred --HHHhhCCCCCEEEEcCCcc
Q 015441 144 --EIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 144 --~~~~~l~~G~~VIDlSa~f 162 (406)
+....++.|..++ +.+.|
T Consensus 265 ~~~~~~~mK~Gaili-N~G~~ 284 (406)
T TIGR00936 265 RGEHFENMKDGAIVA-NIGHF 284 (406)
T ss_pred HHHHHhcCCCCcEEE-EECCC
Confidence 2333446788887 55544
No 465
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=70.00 E-value=13 Score=28.65 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=24.4
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
||.|+| .|++|-|+...|... ..+++.+..
T Consensus 1 ~vvViG-gG~ig~E~A~~l~~~-g~~vtli~~ 30 (80)
T PF00070_consen 1 RVVVIG-GGFIGIELAEALAEL-GKEVTLIER 30 (80)
T ss_dssp EEEEES-SSHHHHHHHHHHHHT-TSEEEEEES
T ss_pred CEEEEC-cCHHHHHHHHHHHHh-CcEEEEEec
Confidence 689999 999999999999864 357766654
No 466
>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=69.96 E-value=6.9 Score=37.72 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=28.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHc--CCCceEEEEecc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTAD 97 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~--hp~~elv~l~s~ 97 (406)
|.||.|.|.||+||..+.+.+.+ .++-+.+.+.+.
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk 37 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK 37 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccc
Confidence 46899999999999999999984 455667777653
No 467
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=69.93 E-value=6.9 Score=38.11 Aligned_cols=96 Identities=13% Similarity=0.036 Sum_probs=50.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccc--ccCccccCCCcccccC-cccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSV--FPHLISQDLPTMVAVK-DADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v--~p~l~~~~~~~~~~~~-~~~~~~vDvVF~al~~~ 140 (406)
-+|.|.||+|-+|+.++++.... ..++..+.+.......+... ...+..........+. ... .++|++|.|.+..
T Consensus 141 ~~vlI~ga~g~ig~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~-~~vd~v~~~~g~~ 218 (329)
T cd08250 141 ETVLVTAAAGGTGQFAVQLAKLA-GCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYP-KGVDVVYESVGGE 218 (329)
T ss_pred CEEEEEeCccHHHHHHHHHHHHc-CCeEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhcC-CCCeEEEECCcHH
Confidence 47999999999999998877765 35565554322111111100 0001010000000000 011 3689999999865
Q ss_pred chHHHHhhCCCCCEEEEcCCc
Q 015441 141 TTQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~~~l~~G~~VIDlSa~ 161 (406)
...+....+..+.++|+++..
T Consensus 219 ~~~~~~~~l~~~g~~v~~g~~ 239 (329)
T cd08250 219 MFDTCVDNLALKGRLIVIGFI 239 (329)
T ss_pred HHHHHHHHhccCCeEEEEecc
Confidence 445555666666677776543
No 468
>PRK12937 short chain dehydrogenase; Provisional
Probab=69.86 E-value=8.4 Score=35.66 Aligned_cols=31 Identities=29% Similarity=0.255 Sum_probs=25.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+.+.+.|.++.. +++.+.
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~ 36 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGF-AVAVNY 36 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEec
Confidence 4799999999999999999987653 554443
No 469
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=69.86 E-value=7.4 Score=37.82 Aligned_cols=95 Identities=9% Similarity=0.043 Sum_probs=49.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccc--ccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSV--FPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v--~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
-+|.|.||+|-+|..+++++... ..+++...+..+.-..+... ..-+...+......+....-.++|+||.|.+...
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~~~ 223 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGGEF 223 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCHHH
Confidence 47999999999999999887754 34666555322111111100 0000000000000000000136899999998754
Q ss_pred hHHHHhhCCCCCEEEEcC
Q 015441 142 TQEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlS 159 (406)
..+..+.+..+.+++..+
T Consensus 224 ~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 224 SSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred HHHHHHhhccCCEEEEEc
Confidence 455555565555556553
No 470
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=69.58 E-value=7.3 Score=38.93 Aligned_cols=39 Identities=26% Similarity=0.453 Sum_probs=31.9
Q ss_pred cEEEEECcccHHHHHHHHHHH-cCCCceEEEEeccCcCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADRKAGQ 102 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~-~hp~~elv~l~s~~~~G~ 102 (406)
+++.|.|+.|+||..++|.+. +||+.+++.+-.-..+|.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn 40 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGN 40 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCC
Confidence 478999999999999999665 789888888766666663
No 471
>PRK06949 short chain dehydrogenase; Provisional
Probab=69.14 E-value=8.5 Score=36.02 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=25.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+.+++.|..+. .+++.+.
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G-~~Vi~~~ 40 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAG-AKVVLAS 40 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999998764 4665554
No 472
>PRK12742 oxidoreductase; Provisional
Probab=69.13 E-value=8 Score=35.68 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=24.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
.+|.|.||+|.+|+++++.|.++. .+++..
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G-~~v~~~ 36 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDG-ANVRFT 36 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEe
Confidence 479999999999999999998753 355544
No 473
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=69.13 E-value=6.4 Score=39.49 Aligned_cols=92 Identities=13% Similarity=0.118 Sum_probs=49.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccC--ccccCCCcccccCcccC-CCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPH--LISQDLPTMVAVKDADF-SNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~--l~~~~~~~~~~~~~~~~-~~vDvVF~al~~~ 140 (406)
-+|.|.||+|-||.-.++++...-. ..+..++++..-..+.+.... +...+....+...+..- .++|+||++.+..
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG~~ 222 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGD 222 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCCHH
Confidence 4799999999999999998887654 444444432111111110000 00000000111100001 3699999999987
Q ss_pred chHHHHhhCCCCCEEE
Q 015441 141 TTQEIIKGLPKSLKIV 156 (406)
Q Consensus 141 ~s~~~~~~l~~G~~VI 156 (406)
...+....+..+-+++
T Consensus 223 ~~~~~l~~l~~~G~lv 238 (326)
T COG0604 223 TFAASLAALAPGGRLV 238 (326)
T ss_pred HHHHHHHHhccCCEEE
Confidence 7777777775544333
No 474
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=69.09 E-value=10 Score=37.87 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=49.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..||+=|..+|.++ +..++..-++. .++ ++...++|+|+.|.|..
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~-~ATVtvchs~T---------------~nl-------~~~~~~ADIvv~AvGk~--- 221 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKA-DATVTVVHSRT---------------PDP-------ESIVREADIVIAAAGQA--- 221 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHC-CCEEEEeCCCC---------------CCH-------HHHHhhCCEEEEcCCCc---
Confidence 58999999999999999999865 34444332211 111 11225789999999863
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
.+.+ .+..|..|||.+-.+
T Consensus 222 ~~i~~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 222 MMIKGDWIKPGAAVIDVGTNA 242 (299)
T ss_pred CccCHHHcCCCCEEEEeeccc
Confidence 3333 257799999987654
No 475
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=69.08 E-value=5.6 Score=37.95 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=24.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|.+|+++++.|.++. .+++.+.
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G-~~V~~~~ 41 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAG-AKVAILD 41 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 469999999999999999998764 3655543
No 476
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=69.03 E-value=7.5 Score=36.15 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=25.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|.+|+.+++.|+++- .+++.+.
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g-~~v~~~~ 34 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEG-AKVAVFD 34 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC-CEEEEec
Confidence 579999999999999999998753 4665553
No 477
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=68.98 E-value=3.9 Score=35.45 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=43.7
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEeccCc------CCccccccccCccccCCCcccccCc--ccCCCCCEEEEcC
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK------AGQSIGSVFPHLISQDLPTMVAVKD--ADFSNVDAVFCCL 137 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~------~G~~i~~v~p~l~~~~~~~~~~~~~--~~~~~vDvVF~al 137 (406)
|+|+| .|-+|.-+.-.|.+ ...++..+..+.. .|..+.. +. ............. ......|+||.|+
T Consensus 1 I~I~G-~GaiG~~~a~~L~~-~g~~V~l~~r~~~~~~~~~~g~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 1 ILIIG-AGAIGSLYAARLAQ-AGHDVTLVSRSPRLEAIKEQGLTITG--PD-GDETVQPPIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp EEEES-TSHHHHHHHHHHHH-TTCEEEEEESHHHHHHHHHHCEEEEE--TT-EEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred CEEEC-cCHHHHHHHHHHHH-CCCceEEEEccccHHhhhheeEEEEe--cc-cceecccccccCcchhccCCCcEEEEEe
Confidence 78999 89999999999976 5556766664331 1211111 01 0000000001111 1235789999999
Q ss_pred CCcchHHHHhhC
Q 015441 138 PHGTTQEIIKGL 149 (406)
Q Consensus 138 ~~~~s~~~~~~l 149 (406)
-.....+.++.+
T Consensus 76 Ka~~~~~~l~~l 87 (151)
T PF02558_consen 76 KAYQLEQALQSL 87 (151)
T ss_dssp SGGGHHHHHHHH
T ss_pred cccchHHHHHHH
Confidence 887777766543
No 478
>PRK05717 oxidoreductase; Validated
Probab=68.85 E-value=8.9 Score=36.05 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=24.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
.+|.|.||+|.+|+++++.|.++. .+++.+
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g-~~v~~~ 40 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEG-WQVVLA 40 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcC-CEEEEE
Confidence 479999999999999999998764 466555
No 479
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=68.72 E-value=6.8 Score=39.82 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=51.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc---------------CcCCc--------cccccccCccccCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQ--------SIGSVFPHLISQDLPTM 119 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~---------------~~~G~--------~i~~v~p~l~~~~~~~~ 119 (406)
..||.|+| .|-+|.++++.|...-.-++..+-.+ ...|+ ++.+..|......+.
T Consensus 28 ~~~VlivG-~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~-- 104 (355)
T PRK05597 28 DAKVAVIG-AGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV-- 104 (355)
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE--
Confidence 36899999 57779999998885443344444221 12232 222233332211110
Q ss_pred cccCc----ccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEE
Q 015441 120 VAVKD----ADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVD 157 (406)
Q Consensus 120 ~~~~~----~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VID 157 (406)
..+++ +.+.++|+|+.|+.+..++.++.. . +.++.+|.
T Consensus 105 ~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~ 148 (355)
T PRK05597 105 RRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVW 148 (355)
T ss_pred eecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 11211 124689999999998877766643 2 55777774
No 480
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.65 E-value=9.8 Score=39.89 Aligned_cols=89 Identities=10% Similarity=0.081 Sum_probs=47.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+| .|.+|.++++.|.++. .+++.+ +.+... ........+....+............++|+|+.+.+.....
T Consensus 17 ~~v~viG-~G~~G~~~A~~L~~~G-~~V~~~-d~~~~~-~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~ 92 (480)
T PRK01438 17 LRVVVAG-LGVSGFAAADALLELG-ARVTVV-DDGDDE-RHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDA 92 (480)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEE-eCCchh-hhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCC
Confidence 4799999 7999999999998654 455444 322210 00000000111111111111111234689999988765555
Q ss_pred HHHhhC-CCCCEEE
Q 015441 144 EIIKGL-PKSLKIV 156 (406)
Q Consensus 144 ~~~~~l-~~G~~VI 156 (406)
.....+ ++|+.|+
T Consensus 93 ~~~~~a~~~gi~v~ 106 (480)
T PRK01438 93 PLLAAAADAGIPVW 106 (480)
T ss_pred HHHHHHHHCCCeec
Confidence 555544 5688876
No 481
>PRK07890 short chain dehydrogenase; Provisional
Probab=68.59 E-value=7.5 Score=36.39 Aligned_cols=30 Identities=13% Similarity=0.027 Sum_probs=24.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
.+|.|.||+|.+|+.+++.|..+. .+++.+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G-~~V~~~ 35 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAG-ADVVLA 35 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcC-CEEEEE
Confidence 479999999999999999998765 365544
No 482
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=68.55 E-value=8.4 Score=32.99 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=23.4
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
++.|.||+|.+|..+++.|..+....+..+
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~ 31 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLL 31 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEE
Confidence 589999999999999999986544344443
No 483
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=68.47 E-value=6.8 Score=38.10 Aligned_cols=95 Identities=12% Similarity=0.026 Sum_probs=50.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccccc---CccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFP---HLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p---~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
-+|.|.|++|-+|+.+++++... ..++..+.+.......+.+.++ .+...+......+....-.++|++|.|.+..
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~~g~~ 225 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLL-GARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDNVGGE 225 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEEcchHH
Confidence 47999999999999999888765 3466555432211111100000 0011110000000000013689999999876
Q ss_pred chHHHHhhCCCCCEEEEcC
Q 015441 141 TTQEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 141 ~s~~~~~~l~~G~~VIDlS 159 (406)
...+..+.+..+.++|.++
T Consensus 226 ~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 226 ILDAALTLLNKGGRIALCG 244 (329)
T ss_pred HHHHHHHhcCCCceEEEEe
Confidence 5555566676655666664
No 484
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=68.44 E-value=11 Score=38.27 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=48.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|-+..||+=|.-+|.++ +..+...-++. .++ .+....+|+|+.|.|...
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~-~ATVTicHs~T---------------~nl-------~~~~~~ADIvIsAvGkp~-- 269 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRH-DATVSTVHAFT---------------KDP-------EQITRKADIVIAAAGIPN-- 269 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHC-CCEEEEEcCCC---------------CCH-------HHHHhhCCEEEEccCCcC--
Confidence 58999999999999999999865 34444333221 111 111257899999998542
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
+.. .++.|..|||.+-.+
T Consensus 270 -~v~~d~vk~GavVIDVGin~ 289 (345)
T PLN02897 270 -LVRGSWLKPGAVVIDVGTTP 289 (345)
T ss_pred -ccCHHHcCCCCEEEEccccc
Confidence 232 256799999987643
No 485
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=68.23 E-value=7.9 Score=37.47 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=49.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccc--cCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF--PHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~--p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
-+|.|.||+|.+|+.+++++.... .+++.+.+....-+.+.... ..+...+ ....+ ..+.++|++|.|.+...
T Consensus 164 ~~vlI~ga~g~vG~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~d~v~~~~g~~~ 238 (332)
T cd08259 164 DTVLVTGAGGGVGIHAIQLAKALG-ARVIAVTRSPEKLKILKELGADYVIDGSK--FSEDV--KKLGGADVVIELVGSPT 238 (332)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC-CeEEEEeCCHHHHHHHHHcCCcEEEecHH--HHHHH--HhccCCCEEEECCChHH
Confidence 479999999999999999987653 56655543211101110000 0000000 00111 11237899999998665
Q ss_pred hHHHHhhCCCCCEEEEcCC
Q 015441 142 TQEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa 160 (406)
.......+..+.++|..+.
T Consensus 239 ~~~~~~~~~~~g~~v~~g~ 257 (332)
T cd08259 239 IEESLRSLNKGGRLVLIGN 257 (332)
T ss_pred HHHHHHHhhcCCEEEEEcC
Confidence 5555555655445555543
No 486
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.19 E-value=8.9 Score=35.55 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=25.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.|++|.+|+.+++.|.++. .+++.+.
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G-~~Vi~~~ 38 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEG-VNVGLLA 38 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 469999999999999999998765 4666654
No 487
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=68.10 E-value=10 Score=32.93 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=25.7
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccC
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR 98 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~ 98 (406)
.+.|.||++-+|+++++.|..+....+ .+.+++
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v-~~~~r~ 34 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVV-ILTSRS 34 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEE-EEEESS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEE-EEeeec
Confidence 589999999999999999998844444 444444
No 488
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=68.09 E-value=13 Score=39.07 Aligned_cols=89 Identities=19% Similarity=0.305 Sum_probs=52.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccC-ccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPH-LISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~-l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
++||+|+| -|..|+.+++.|.++- .+++.. +.+..-...... +. ..+.+.. ....+.+++..+|+|+..-|-..
T Consensus 7 ~~kv~V~G-LG~sG~a~a~~L~~~G-~~v~v~-D~~~~~~~~~~~-~~~~~~i~~~-~g~~~~~~~~~~d~vV~SPGi~~ 81 (448)
T COG0771 7 GKKVLVLG-LGKSGLAAARFLLKLG-AEVTVS-DDRPAPEGLAAQ-PLLLEGIEVE-LGSHDDEDLAEFDLVVKSPGIPP 81 (448)
T ss_pred CCEEEEEe-cccccHHHHHHHHHCC-CeEEEE-cCCCCccchhhh-hhhccCceee-cCccchhccccCCEEEECCCCCC
Confidence 57899999 9999999999998754 444443 433221111100 00 0111111 11111245678999999887666
Q ss_pred hHHHHhhC-CCCCEEE
Q 015441 142 TQEIIKGL-PKSLKIV 156 (406)
Q Consensus 142 s~~~~~~l-~~G~~VI 156 (406)
...++.+. .+|+.|+
T Consensus 82 ~~p~v~~A~~~gi~i~ 97 (448)
T COG0771 82 THPLVEAAKAAGIEII 97 (448)
T ss_pred CCHHHHHHHHcCCcEE
Confidence 66766654 6799988
No 489
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=68.06 E-value=4.4 Score=43.59 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=26.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|-+|.+|.+.++.+.--+++.+.
T Consensus 251 K~vLVTGagGSiGsel~~qil~~~p~~i~l~~ 282 (588)
T COG1086 251 KTVLVTGGGGSIGSELCRQILKFNPKEIILFS 282 (588)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhcCCCEEEEec
Confidence 57999999999999999988866445666664
No 490
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=68.02 E-value=7.8 Score=37.96 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=28.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD 97 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~ 97 (406)
++.++.|.|||+=+|+++.+.|+.+- .+++.++.+
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g-~~liLvaR~ 39 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRG-YNLILVARR 39 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCc
Confidence 44679999999999999999999763 578777643
No 491
>PRK06101 short chain dehydrogenase; Provisional
Probab=67.95 E-value=8.3 Score=36.03 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=25.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||||.+|+++++.|+++. .+++.+.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G-~~V~~~~ 32 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQG-WQVIACG 32 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCC-CEEEEEE
Confidence 469999999999999999998764 4665543
No 492
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=67.84 E-value=7.1 Score=39.80 Aligned_cols=38 Identities=29% Similarity=0.531 Sum_probs=33.8
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK 99 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~ 99 (406)
.+.+||++|| +|..|+-++......|.++++++++++-
T Consensus 15 G~PiRVGlIG-AG~mG~~ivtQi~~m~Gm~vvaisd~~~ 52 (438)
T COG4091 15 GKPIRVGLIG-AGEMGTGIVTQIASMPGMEVVAISDRNL 52 (438)
T ss_pred CCceEEEEec-ccccchHHHHHHhhcCCceEEEEecccc
Confidence 5678999999 8999999999999999999999987653
No 493
>PRK06500 short chain dehydrogenase; Provisional
Probab=67.79 E-value=8.4 Score=35.77 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=24.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
.+|.|.||+|.+|+.+++.|.++. .+++.+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g-~~v~~~ 36 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEG-ARVAIT 36 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEe
Confidence 479999999999999999998765 466544
No 494
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=67.74 E-value=14 Score=34.64 Aligned_cols=89 Identities=18% Similarity=0.165 Sum_probs=49.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc----CCccccccccCccccCCCcccc-cCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK----AGQSIGSVFPHLISQDLPTMVA-VKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~----~G~~i~~v~p~l~~~~~~~~~~-~~~~~~~~vDvVF~al~ 138 (406)
.+|.|+|.+..+|+=|.-+|.+. ...+...-++.. .+.++. | -.. .....+. + .+...++|+|+.|.|
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~-~AtVti~~~~~~~~~~~~~~~~--h--s~t-~~~~~~~~l-~~~~~~ADIVIsAvG 135 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLAND-GARVYSVDINGIQVFTRGESIR--H--EKH-HVTDEEAMT-LDCLSQSDVVITGVP 135 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHC-CCEEEEEecCcccccccccccc--c--ccc-cccchhhHH-HHHhhhCCEEEEccC
Confidence 58999999999999999999864 345443311110 000000 0 000 0000000 1 122368999999998
Q ss_pred CcchHHHHh--hCCCCCEEEEcCCc
Q 015441 139 HGTTQEIIK--GLPKSLKIVDLSAD 161 (406)
Q Consensus 139 ~~~s~~~~~--~l~~G~~VIDlSa~ 161 (406)
...-. .+ .++.|..|||.+..
T Consensus 136 ~~~~~--i~~d~ik~GavVIDVGi~ 158 (197)
T cd01079 136 SPNYK--VPTELLKDGAICINFASI 158 (197)
T ss_pred CCCCc--cCHHHcCCCcEEEEcCCC
Confidence 54220 22 25679999998764
No 495
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=67.66 E-value=9.1 Score=35.37 Aligned_cols=24 Identities=42% Similarity=0.483 Sum_probs=21.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP 87 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp 87 (406)
.++.|.||+|.+|+++++.|.++-
T Consensus 7 ~~vlItGa~g~iG~~la~~l~~~g 30 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLHAQG 30 (245)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC
Confidence 479999999999999999998654
No 496
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.65 E-value=9.8 Score=37.60 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=48.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..||+=|..+|.+. +..+. +...+ ..++ .+....+|+|+.|.|..
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~-~AtVt-i~hs~--------------T~~l-------~~~~~~ADIvV~AvGkp--- 211 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNA-NATVD-ICHIF--------------TKDL-------KAHTKKADIVIVGVGKP--- 211 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHC-CCEEE-EeCCC--------------CcCH-------HHHHhhCCEEEEecCcc---
Confidence 48999999999999999999864 34443 22111 1111 11235789999999854
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
++.+ .+..|..|||.+-.+
T Consensus 212 ~~i~~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 212 NLITEDMVKEGAIVIDIGINR 232 (281)
T ss_pred cccCHHHcCCCcEEEEeeccc
Confidence 2332 246799999987543
No 497
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.54 E-value=9.2 Score=35.58 Aligned_cols=31 Identities=16% Similarity=0.060 Sum_probs=24.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+.+++.|.++. .+++...
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g-~~v~~~~ 37 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEG-SLVVVNA 37 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999998654 3555444
No 498
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=67.48 E-value=12 Score=38.36 Aligned_cols=72 Identities=11% Similarity=0.218 Sum_probs=47.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..||+=|..+|.+. +..+...-++. .++. +...++|+|+.|.|...
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~-~ATVTicHs~T---------------~nl~-------~~~r~ADIVIsAvGkp~-- 286 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQRE-DATVSIVHSRT---------------KNPE-------EITREADIIISAVGQPN-- 286 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHC-CCeEEEeCCCC---------------CCHH-------HHHhhCCEEEEcCCCcC--
Confidence 58999999999999999999864 23443332211 1111 11257899999998542
Q ss_pred HHHh--hCCCCCEEEEcCCc
Q 015441 144 EIIK--GLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~ 161 (406)
+.. .+..|..|||..-.
T Consensus 287 -~i~~d~vK~GAvVIDVGIn 305 (364)
T PLN02616 287 -MVRGSWIKPGAVVIDVGIN 305 (364)
T ss_pred -cCCHHHcCCCCEEEecccc
Confidence 232 25679999997654
No 499
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=67.41 E-value=8.1 Score=38.37 Aligned_cols=82 Identities=16% Similarity=0.310 Sum_probs=43.9
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEec---------------cCcCCc--------cccccccCccccCCC-ccc
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTA---------------DRKAGQ--------SIGSVFPHLISQDLP-TMV 120 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s---------------~~~~G~--------~i~~v~p~l~~~~~~-~~~ 120 (406)
||.|+| .|-+|.++++.|.....-++..+-. .++.|+ .+.+..|........ .+.
T Consensus 1 kVlVVG-aGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIG-AGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 689999 6677999999887533333333321 122332 122223322111110 011
Q ss_pred ccCcccCCCCCEEEEcCCCcchHHHHh
Q 015441 121 AVKDADFSNVDAVFCCLPHGTTQEIIK 147 (406)
Q Consensus 121 ~~~~~~~~~vDvVF~al~~~~s~~~~~ 147 (406)
+.+.+-+.+.|+|+.|++...++.++.
T Consensus 80 ~~~~~f~~~fdvVi~alDn~~aR~~in 106 (291)
T cd01488 80 DKDEEFYRQFNIIICGLDSIEARRWIN 106 (291)
T ss_pred chhHHHhcCCCEEEECCCCHHHHHHHH
Confidence 111222478999999999887776653
No 500
>PRK06057 short chain dehydrogenase; Provisional
Probab=67.35 E-value=8.6 Score=36.15 Aligned_cols=30 Identities=17% Similarity=0.061 Sum_probs=25.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
.+|.|+||+|.+|..+++.|.++. .+++.+
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G-~~v~~~ 37 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEG-ATVVVG 37 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcC-CEEEEE
Confidence 479999999999999999998764 466555
Done!