BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015442
(406 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225434853|ref|XP_002282322.1| PREDICTED: uncharacterized protein LOC100241598 [Vitis vinifera]
gi|297746029|emb|CBI16085.3| unnamed protein product [Vitis vinifera]
Length = 393
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 299/413 (72%), Positives = 325/413 (78%), Gaps = 32/413 (7%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
+S T VY+ VIEDVI+KVRDEFVNNG PGESVL+ELQGIWEMKM+QAGV+ I+R++A
Sbjct: 4 SSMTSTVYVSVIEDVINKVRDEFVNNGGPGESVLSELQGIWEMKMVQAGVVTGPIERSTA 63
Query: 59 PKQPAPG-GPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 117
PKQ + P PVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG
Sbjct: 64 PKQTSGAPAPTPPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG--------- 114
Query: 118 LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
DNS YNIPTG ++YP A D GG T+ KSG P SPWM R
Sbjct: 115 ---------MGDNSMYNIPTGPTEYPA-AQDGGGATDMKSGRPPSYMPPP---SPWMQQR 161
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237
PPLSVDVNVAYVEGRDE DRG S QPLTQDFF MS+GKRKREDFP+QYH GY IPQQDG
Sbjct: 162 PPLSVDVNVAYVEGRDEGDRGNSQQPLTQDFFMMSSGKRKREDFPSQYHTSGY-IPQQDG 220
Query: 238 AGDAMSEIFELEVSEFPGR---QDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLS 294
AGD E+FE+EVS+ D +T ANREIF +A S V+IPQLDGPIPDPY+DVLS
Sbjct: 221 AGDPAPEVFEVEVSQGSNSIKGHDILTKANREIFPQVAGSYVRIPQLDGPIPDPYEDVLS 280
Query: 295 TPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE-PLNENDDDELDDV 353
TPNIYNYQGVVNEDYNIVNTPAPNDIQA TPAV QND +DDDDE PLNENDDD+LDDV
Sbjct: 281 TPNIYNYQGVVNEDYNIVNTPAPNDIQAGTPAVGIQNDVGDDDDDEPPLNENDDDDLDDV 340
Query: 354 DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+QGEELNTQHLVLAQFDKVTRTKS+WKC LKDGIMHINNKDILFNKA GEFDF
Sbjct: 341 EQGEELNTQHLVLAQFDKVTRTKSKWKCTLKDGIMHINNKDILFNKANGEFDF 393
>gi|224054626|ref|XP_002298340.1| predicted protein [Populus trichocarpa]
gi|222845598|gb|EEE83145.1| predicted protein [Populus trichocarpa]
Length = 409
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 297/426 (69%), Positives = 341/426 (80%), Gaps = 37/426 (8%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRT 56
MA+SAT VY VIEDVI KVRDEF+NNG PGE+VL+ELQG+WE K++QAGV+ I R+
Sbjct: 1 MASSATSTVYTEVIEDVIDKVRDEFINNGGPGETVLSELQGLWEKKLMQAGVLSGPIVRS 60
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGS--TPLPG 114
SA KQ PGG +TPVHDLNVPYEGTEEYETPTAEILFPPTPL QTPLPG+ TPLPG
Sbjct: 61 SANKQLVPGG-LTPVHDLNVPYEGTEEYETPTAEILFPPTPLPGSAQTPLPGNVQTPLPG 119
Query: 115 STPLPGSTPLPGTADNST-YNIPTGSS-DYPTPASDSGGNTEAKSGNGRPSSYMPPPPSP 172
+ P TPLPG+ DNS+ YNI TGSS DYPTP SD+GG+T+ K+G RPS +M P SP
Sbjct: 120 NVP----TPLPGSVDNSSMYNISTGSSSDYPTPVSDAGGSTDVKAG--RPSHFMQSP-SP 172
Query: 173 WMNPRPPLSVDVN----------VAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFP 222
M+ RPPL V+V VAYVEGRDE DRG SHQ LTQDFF MS+GKRKR DF
Sbjct: 173 LMHQRPPLDVNVGKVLTNKCCAFVAYVEGRDEVDRGGSHQTLTQDFF-MSSGKRKRGDFA 231
Query: 223 AQYHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLD 282
+Y+NGG+ IPQQDGA D+ SE+ ++E D++TT NREI A ++ S VKIPQ+D
Sbjct: 232 PKYNNGGF-IPQQDGAVDSASEVSQVEC-------DTITTKNREILARVSRSYVKIPQVD 283
Query: 283 GPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPL 342
GPIPDPYDD+LSTPNIYNYQGV NEDYNI NTPAPND+QASTPAVV+QND +DDDDEPL
Sbjct: 284 GPIPDPYDDMLSTPNIYNYQGVANEDYNIANTPAPNDLQASTPAVVSQNDDVDDDDDEPL 343
Query: 343 NENDDDELDD--VDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
NE+DDD+ D VDQGEELNTQHL+LAQFDKVTRTKSRWKC LKDG+MHINN+DILFNKA
Sbjct: 344 NEDDDDDEDLDGVDQGEELNTQHLILAQFDKVTRTKSRWKCTLKDGVMHINNRDILFNKA 403
Query: 401 TGEFDF 406
TGEF+F
Sbjct: 404 TGEFEF 409
>gi|255558990|ref|XP_002520518.1| protein with unknown function [Ricinus communis]
gi|223540360|gb|EEF41931.1| protein with unknown function [Ricinus communis]
Length = 383
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 283/405 (69%), Positives = 328/405 (80%), Gaps = 39/405 (9%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTSAPKQPAPG 65
VYI VIEDV++KVRDEF+NNGPGE+VLNELQ IWE+KM+QAGVI I+R+S K PG
Sbjct: 11 VYIHVIEDVVNKVRDEFINNGPGETVLNELQAIWELKMMQAGVICGPIERSSGAKT-VPG 69
Query: 66 GPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLP 125
G ITPVHDLNVPYEGTEEYETPTAEILFPPTPL PG+ TPLP
Sbjct: 70 GVITPVHDLNVPYEGTEEYETPTAEILFPPTPL--------------PGT----AQTPLP 111
Query: 126 GTADNST-YNIPTG-SSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPRPPLSVD 183
G+ DNS+ YNIPTG +S+YPTP SDSGG+TEAK+G RPS YM PP SPW+N RPPL D
Sbjct: 112 GSVDNSSMYNIPTGPTSEYPTPVSDSGGSTEAKAG--RPSPYMQPP-SPWINQRPPL--D 166
Query: 184 VNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMS 243
VN+AYVEGR+EADRGTS+QPLTQDFFT ++GKRKREDF AQY+NGG+ IPQQDGAGD
Sbjct: 167 VNIAYVEGREEADRGTSNQPLTQDFFTGASGKRKREDFAAQYNNGGF-IPQQDGAGDTPF 225
Query: 244 EIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQG 303
E+ ++E +D+V +A+ EI +++ +KIPQLDGPIPDPYDDVLSTPNIYNYQG
Sbjct: 226 EVLQVE-------RDTVISADIEILSSVTRRGLKIPQLDGPIPDPYDDVLSTPNIYNYQG 278
Query: 304 VVNEDYNIVNTPAPNDIQASTPAVVTQN--DAAEDDDDEPLNENDDDELDDVDQGEELNT 361
V NEDYNI NTPAPND+QASTPA++ QN +DD+ +++DDD+LDDVDQGE++NT
Sbjct: 279 VANEDYNIANTPAPNDLQASTPAIIPQNDVVDDDDDEPLNEDDDDDDDLDDVDQGEDMNT 338
Query: 362 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
QHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 339 QHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 383
>gi|449450764|ref|XP_004143132.1| PREDICTED: transcription initiation factor IIA large subunit-like
[Cucumis sativus]
gi|449496658|ref|XP_004160191.1| PREDICTED: transcription initiation factor IIA large subunit-like
[Cucumis sativus]
Length = 402
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 277/427 (64%), Positives = 323/427 (75%), Gaps = 46/427 (10%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MATS T +YI VIEDVI+K+RDEFV+NGPGE VL ELQG+WE KM+QAG + I+R S
Sbjct: 1 MATS-TSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIER-S 58
Query: 58 APKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 117
AP +P PGGPITPVHDLNVPYEGTEEYETPTA++LFPPTPLQTPIQTPLPG
Sbjct: 59 APSKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPG--------- 109
Query: 118 LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSG---------GNTEAKSGNGRPSSYMPP 168
TADN+ YN+PTG SD+ +D+ GN + +GRP+ YM P
Sbjct: 110 ---------TADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQP 160
Query: 169 PPSPWMNPRPPLSVDVNVAYVEGRDEA-DRGTS--HQPLTQDFFTMSAGKRKREDFPAQY 225
P WM R P VDVN+AYVEGR+EA DRG + H LTQDFF M++GKRKR+DF +QY
Sbjct: 161 PS--WMGQRTP--VDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQY 216
Query: 226 HNGGYNIPQQDGAGDAMSEIFELEVS---EFPGRQDSVTTANREIFANLASSSVKIPQLD 282
G+ IPQQDGAGDA + +FE+E+S GR ++T+A +++ S +KIPQLD
Sbjct: 217 QANGF-IPQQDGAGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLD 275
Query: 283 GPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDD-EP 341
GP+PDPYDDVLSTPNIYNYQGV NEDYNI NTPAPND A TPAVVTQ+D E+++D EP
Sbjct: 276 GPMPDPYDDVLSTPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEP 335
Query: 342 -LNE-NDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 399
LNE +DDD+LDDVDQGEEL+TQHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNK
Sbjct: 336 SLNEDDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNK 395
Query: 400 ATGEFDF 406
ATGEFDF
Sbjct: 396 ATGEFDF 402
>gi|356550303|ref|XP_003543527.1| PREDICTED: transcription initiation factor IIA large subunit-like
isoform 1 [Glycine max]
Length = 391
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 276/419 (65%), Positives = 315/419 (75%), Gaps = 41/419 (9%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRT 56
MA S T VYI VIEDV+ KVRDEFVNNG PGE VL ELQ +WE KM+QAG + I+R+
Sbjct: 1 MAASTTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMMQAGAVLGPIERS 60
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
+A K P PGGPITPVHDLNVPYEGT+EYETPTA++LFPPTPLQTPIQTPLPG
Sbjct: 61 TAAK-PTPGGPITPVHDLNVPYEGTDEYETPTADMLFPPTPLQTPIQTPLPG-------- 111
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 176
T DNSTYNIPTG SDYP+ +D+GGN + K RP+ YM P SPWMN
Sbjct: 112 ----------TGDNSTYNIPTGPSDYPSSGNDTGGNADGKGA--RPAPYMQSP-SPWMNQ 158
Query: 177 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 236
RPPL DVNVAYVEGRDEADRGTS+QP TQDFFTM +GKRKR D +QY+ GGY IPQQD
Sbjct: 159 RPPL--DVNVAYVEGRDEADRGTSNQPPTQDFFTMPSGKRKRNDLTSQYNAGGY-IPQQD 215
Query: 237 GAGDAMSEIFELEVSEFPGRQDSV----TTANREIFANLASSSVKIPQLDGPIPDPYDDV 292
GAGDA FE+EVS GR S+ T + ++ A+L S+ +IPQLDGPIP DDV
Sbjct: 216 GAGDATHGDFEIEVS---GRGISINSHHTISKGKMSADLERSTSRIPQLDGPIPYDDDDV 272
Query: 293 LSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDD-----DEPLNENDD 347
LSTPNIYNY V +EDYNI NTPAP ++ ASTPA++ QN+ D D + PLNE DD
Sbjct: 273 LSTPNIYNYGEVFSEDYNISNTPAPPEVPASTPALLVQNEVGNDFDDDDDDEPPLNEEDD 332
Query: 348 DELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
D+LDD++QGE+ NT HLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 333 DDLDDMEQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF 391
>gi|356557404|ref|XP_003547006.1| PREDICTED: transcription initiation factor IIA large subunit-like
[Glycine max]
Length = 390
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 272/416 (65%), Positives = 315/416 (75%), Gaps = 36/416 (8%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRT 56
MA S T VYI VIEDV+ KVRDEFVNNG PGE VL ELQ +WE KM+QAG + I+R+
Sbjct: 1 MAASTTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMMQAGAVLGPIERS 60
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
SA K PGGPITPVHDLNVPYEGTEEYETPTA++LFPPTPLQTPIQTPLPG
Sbjct: 61 SAAKA-TPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPG-------- 111
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 176
T DNSTYNIPTG++DYP+ +D+GGN + K RP+ YM P SPWMN
Sbjct: 112 ----------TGDNSTYNIPTGANDYPSSGNDTGGNADGKGA--RPAPYMQPS-SPWMNQ 158
Query: 177 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 236
RPPL DVNVAYVEGRDEAD+GTS+QPLTQDFFT ++GKRKR D +QY+ GGY IPQQD
Sbjct: 159 RPPL--DVNVAYVEGRDEADKGTSNQPLTQDFFTRTSGKRKRNDLTSQYNVGGY-IPQQD 215
Query: 237 GAGDAMSEIFELEVSEFPGRQDSVTTANRE-IFANLASSSVKIPQLDGPIPDPYDDVLST 295
GAGDA +FE+EVS +S T ++E + A+L S+ +IPQLDGPIP DDVLST
Sbjct: 216 GAGDAAHGVFEIEVSGGGISINSHHTISKEKMSADLERSTSRIPQLDGPIPYD-DDVLST 274
Query: 296 PNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDD-----DEPLNENDDDEL 350
PNIYNY V +EDYNI NTPAP ++ ASTPA++ QN+ D D + PLNE DDD+L
Sbjct: 275 PNIYNYGEVFSEDYNISNTPAPPEVPASTPALLAQNEVGNDFDDDDDDEPPLNEEDDDDL 334
Query: 351 DDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
DD++QG++ NT HLVLAQFDKV RTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 335 DDMEQGDDQNTHHLVLAQFDKVARTKSRWKCTLKDGIMHINNKDILFNKATGEFEF 390
>gi|224104389|ref|XP_002313420.1| predicted protein [Populus trichocarpa]
gi|222849828|gb|EEE87375.1| predicted protein [Populus trichocarpa]
Length = 401
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 283/422 (67%), Positives = 323/422 (76%), Gaps = 37/422 (8%)
Query: 1 MATS-ATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDR 55
MA+S AT VYI VIEDVI+KVRDEF+NNG PGE+VL ELQG+WE KM+QAG I IDR
Sbjct: 1 MASSDATSPVYINVIEDVINKVRDEFINNGGPGETVLYELQGLWETKMMQAGAICGTIDR 60
Query: 56 TSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTP--LQTPIQTPLPGSTPLP 113
+SA K P PGGPITPVHDLNVPYEGTEEYETPTAEILFPP QTPLPG+
Sbjct: 61 SSANKLPVPGGPITPVHDLNVPYEGTEEYETPTAEILFPPCANTFTWNAQTPLPGN---- 116
Query: 114 GSTPLPGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSP 172
TPLPG+ DNS+ YNIPTGSSDYPTP SD+GG+T+ K+G RPS +M S
Sbjct: 117 ------AQTPLPGSVDNSSMYNIPTGSSDYPTPVSDAGGSTDGKAG--RPSPFMV---ST 165
Query: 173 WMNPRPPL----SVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNG 228
+ +P L VAYVEGRDE DRGTSHQ LTQDFF M +GKRKREDF +Y+NG
Sbjct: 166 DLIFQPSLVLTNKCCAFVAYVEGRDEVDRGTSHQALTQDFF-MPSGKRKREDFAPKYNNG 224
Query: 229 GYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDP 288
G+ IPQQDGAGD+ SE+ ++E++ TT N+EI A ++ S +KIPQ+DGPIPDP
Sbjct: 225 GF-IPQQDGAGDSASEVSQVELN----VNSYFTTKNKEILARVSRSYLKIPQVDGPIPDP 279
Query: 289 YDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQ---NDAAEDDDDEPLNEN 345
YDDVLSTPNIYNYQGV NEDYNI NTPAPND ASTPAVV+Q D +DD+ +++
Sbjct: 280 YDDVLSTPNIYNYQGVANEDYNIANTPAPNDPLASTPAVVSQNDVADDDDDDEPLNEDDD 339
Query: 346 DDDELDDVDQGEELNT-QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 404
DD++LDDVDQGEELNT QHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF
Sbjct: 340 DDEDLDDVDQGEELNTPQHLVLAQFDKVTRTKSRWKCILKDGIMHINNKDILFNKATGEF 399
Query: 405 DF 406
DF
Sbjct: 400 DF 401
>gi|356550305|ref|XP_003543528.1| PREDICTED: transcription initiation factor IIA large subunit-like
isoform 2 [Glycine max]
Length = 384
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 270/415 (65%), Positives = 309/415 (74%), Gaps = 40/415 (9%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRT 56
MA S T VYI VIEDV+ KVRDEFVNNG PGE VL ELQ +WE KM+QAG + I+R+
Sbjct: 1 MAASTTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMMQAGAVLGPIERS 60
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
+A K P PGGPITPVHDLNVPYEGT+EYETPTA++LFPPTPLQTPIQTPLPG
Sbjct: 61 TAAK-PTPGGPITPVHDLNVPYEGTDEYETPTADMLFPPTPLQTPIQTPLPG-------- 111
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 176
T DNSTYNIPTG SDYP+ +D+GGN + K RP+ YM P SPWMN
Sbjct: 112 ----------TGDNSTYNIPTGPSDYPSSGNDTGGNADGKGA--RPAPYMQSP-SPWMNQ 158
Query: 177 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 236
RPPL DVNVAYVEGRDEADRGTS+QP TQDFFTM +GKRKR D +QY+ GGY IPQQD
Sbjct: 159 RPPL--DVNVAYVEGRDEADRGTSNQPPTQDFFTMPSGKRKRNDLTSQYNAGGY-IPQQD 215
Query: 237 GAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTP 296
GAGDA FE+E + + ++ A+L S+ +IPQLDGPIP DDVLSTP
Sbjct: 216 GAGDATHGDFEIEFLKI------AYISKGKMSADLERSTSRIPQLDGPIPYDDDDVLSTP 269
Query: 297 NIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDD-----DEPLNENDDDELD 351
NIYNY V +EDYNI NTPAP ++ ASTPA++ QN+ D D + PLNE DDD+LD
Sbjct: 270 NIYNYGEVFSEDYNISNTPAPPEVPASTPALLVQNEVGNDFDDDDDDEPPLNEEDDDDLD 329
Query: 352 DVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
D++QGE+ NT HLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 330 DMEQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF 384
>gi|356538972|ref|XP_003537974.1| PREDICTED: uncharacterized protein LOC100800601 [Glycine max]
Length = 392
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 278/420 (66%), Positives = 318/420 (75%), Gaps = 42/420 (10%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRT 56
MA S T VYI+VI+DV++KVRDEFVNNG PG+ VL ELQ IWE KM+QAG I I+R+
Sbjct: 1 MAASTTSQVYIQVIDDVMNKVRDEFVNNGGPGDEVLKELQSIWESKMMQAGAIVGPIERS 60
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
APK P PGGPITPVHDLN+PYEGTEEYETPTAE+LFPPTPLQTP+QTPLPG
Sbjct: 61 GAPK-PTPGGPITPVHDLNMPYEGTEEYETPTAEMLFPPTPLQTPLQTPLPG-------- 111
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 176
T DNS YNIPTG SDYP+ ++ G N E K G RP YM PPPSPW N
Sbjct: 112 ----------TVDNSMYNIPTGPSDYPSAGNEPGANNEIKGG--RPGPYMQPPPSPWTNQ 159
Query: 177 ------RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGY 230
R PL DVNVAYVEGRDEA+RG S+QPLTQDFF MS+GKRKR++ +QY+ GGY
Sbjct: 160 NQNQNQRAPL--DVNVAYVEGRDEAERGASNQPLTQDFF-MSSGKRKRDEIASQYNAGGY 216
Query: 231 NIPQQDGAGDAMSEIFELEVSEFPGRQDS-VTTANREIFANLASSSVKIPQLDGPIPDPY 289
IPQQDGAGDA S+I E+EV D+ +T+ ++ A + +IPQLDGPIP Y
Sbjct: 217 -IPQQDGAGDAASQILEIEVYGGGMSIDAGHSTSKGKMPAQSDRPASQIPQLDGPIP--Y 273
Query: 290 DD-VLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE--PLNEND 346
DD VLSTPNIYNY GV NEDYNI NTPAP+++ ASTPA + QN+ E+DDD+ PLNEND
Sbjct: 274 DDDVLSTPNIYNY-GVFNEDYNIANTPAPSEVPASTPAPIAQNEVDEEDDDDEPPLNEND 332
Query: 347 DDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
DD+LDD+DQGE+ NT HLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 333 DDDLDDLDQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 392
>gi|356542286|ref|XP_003539600.1| PREDICTED: transcription initiation factor IIA large subunit-like
isoform 1 [Glycine max]
Length = 382
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 271/416 (65%), Positives = 311/416 (74%), Gaps = 44/416 (10%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRT 56
MA S+T VYI+VI+DV+ KVRDEFVNNG PG+ VL ELQ IWE KM+QAG I I+R+
Sbjct: 1 MAASSTSQVYIQVIDDVMIKVRDEFVNNGGPGDEVLKELQSIWESKMLQAGAIVGPIERS 60
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
APK P PGGPITPVHDLN+PYEGTEEYETPTAE+LFPPTPLQTP+QTPLPG
Sbjct: 61 GAPK-PTPGGPITPVHDLNMPYEGTEEYETPTAEMLFPPTPLQTPLQTPLPG-------- 111
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPP--SPWM 174
T DNS YNIPTG SDYP+ ++ G N E K G RP YM PPP S
Sbjct: 112 ----------TVDNSMYNIPTGPSDYPSAGNEPGENNEIKGG--RPGPYMQPPPWTSQNQ 159
Query: 175 NPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQ 234
N R PL DVNVAYVEGRD A+RG S+QPLTQDFF MS+GKRKR++ +QY+ GGY IPQ
Sbjct: 160 NQRAPL--DVNVAYVEGRDAAERGASNQPLTQDFF-MSSGKRKRDEIASQYNAGGY-IPQ 215
Query: 235 QDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDD-VL 293
QDGAGDA S+IFE+EV F +T+N ++ A+ + +IPQ DGPIP YDD V+
Sbjct: 216 QDGAGDADSQIFEIEVWHF------FSTSNGKMPAHSDRPASQIPQFDGPIP--YDDDVV 267
Query: 294 STPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE--PLNENDDDELD 351
STPN+YNY GV NEDYNI NTPA +D+ ASTPA V QN+ E+DDD+ PLNENDDD+
Sbjct: 268 STPNMYNY-GVFNEDYNIANTPASSDVPASTPAPVAQNEVDEEDDDDDEPLNENDDDDDL 326
Query: 352 DVD-QGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
D QGE+ NT HLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 327 DDLDQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF 382
>gi|356542288|ref|XP_003539601.1| PREDICTED: transcription initiation factor IIA large subunit-like
isoform 2 [Glycine max]
Length = 389
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 271/417 (64%), Positives = 312/417 (74%), Gaps = 39/417 (9%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRT 56
MA S+T VYI+VI+DV+ KVRDEFVNNG PG+ VL ELQ IWE KM+QAG I I+R+
Sbjct: 1 MAASSTSQVYIQVIDDVMIKVRDEFVNNGGPGDEVLKELQSIWESKMLQAGAIVGPIERS 60
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
APK P PGGPITPVHDLN+PYEGTEEYETPTAE+LFPPTPLQTP+QTPLPG
Sbjct: 61 GAPK-PTPGGPITPVHDLNMPYEGTEEYETPTAEMLFPPTPLQTPLQTPLPG-------- 111
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPP--SPWM 174
T DNS YNIPTG SDYP+ ++ G N E K G RP YM PPP S
Sbjct: 112 ----------TVDNSMYNIPTGPSDYPSAGNEPGENNEIKGG--RPGPYMQPPPWTSQNQ 159
Query: 175 NPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQ 234
N R PL DVNVAYVEGRD A+RG S+QPLTQDFF MS+GKRKR++ +QY+ GGY IPQ
Sbjct: 160 NQRAPL--DVNVAYVEGRDAAERGASNQPLTQDFF-MSSGKRKRDEIASQYNAGGY-IPQ 215
Query: 235 QDGAGDAMSEIFELEVSEFPGRQDS-VTTANREIFANLASSSVKIPQLDGPIPDPYDD-V 292
QDGAGDA S+IFE+EV D+ +T+N ++ A+ + +IPQ DGPIP YDD V
Sbjct: 216 QDGAGDADSQIFEIEVYGGGISIDAGHSTSNGKMPAHSDRPASQIPQFDGPIP--YDDDV 273
Query: 293 LSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE--PLNENDDDEL 350
+STPN+YNY GV NEDYNI NTPA +D+ ASTPA V QN+ E+DDD+ PLNENDDD+
Sbjct: 274 VSTPNMYNY-GVFNEDYNIANTPASSDVPASTPAPVAQNEVDEEDDDDDEPLNENDDDDD 332
Query: 351 DDVD-QGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
D QGE+ NT HLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 333 LDDLDQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF 389
>gi|357454247|ref|XP_003597404.1| Transcription factor/ transcription initiation factor [Medicago
truncatula]
gi|355486452|gb|AES67655.1| Transcription factor/ transcription initiation factor [Medicago
truncatula]
gi|388523053|gb|AFK49588.1| unknown [Medicago truncatula]
Length = 388
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 265/415 (63%), Positives = 299/415 (72%), Gaps = 36/415 (8%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG--PGESVLNELQGIWEMKMIQAGVI---IDR 55
MA S T VYI VIEDV+ KVRDEFVN G PG+ VL ELQ IWE K IQAG + I+R
Sbjct: 1 MAASTTSQVYIDVIEDVMVKVRDEFVNTGASPGDEVLRELQAIWESKCIQAGAVLGPIER 60
Query: 56 TSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGS 115
+ +P PGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG
Sbjct: 61 NTGVNRPMPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG------- 113
Query: 116 TPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMN 175
PG TP YNIPTG SDY + +D+GGN + K G ++MPPP SPWMN
Sbjct: 114 ---PGETP--------NYNIPTGPSDYSS-GNDAGGNADVKGGR---QAFMPPP-SPWMN 157
Query: 176 --PRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIP 233
RPPL DVNVAYVEGRDEADRG S+QP+TQDFFTM+ GKRKR D P Y GGY IP
Sbjct: 158 MNQRPPL--DVNVAYVEGRDEADRGASNQPMTQDFFTMTGGKRKRNDLPPPYDAGGY-IP 214
Query: 234 QQDGAGDAMSEIFELEVSEFPGRQDSVTTANR-EIFANLASSSVKIPQLDGPIPDPYDDV 292
QQDGAGDA+S FE+EV +S T ++ ++ A+L + +IPQLDGPIP DDV
Sbjct: 215 QQDGAGDAVSGDFEIEVCGGSISFNSQHTNSKGKMPADLERLASRIPQLDGPIPY-EDDV 273
Query: 293 LSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDD 352
LSTPNIYNY GV NEDYNI NTPAP ++ ASTPA+V QN+A +D+D+ DDD+ D
Sbjct: 274 LSTPNIYNYGGVFNEDYNIANTPAPPEVPASTPALVAQNEAVNEDEDDEPLNEDDDDDLD 333
Query: 353 VDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
E+ T HLVLAQFDKVTRTKSRWKC LKDGIMHIN KDILFNKATGEFDF
Sbjct: 334 DLDQEDDQDTNHLVLAQFDKVTRTKSRWKCTLKDGIMHINKKDILFNKATGEFDF 388
>gi|312282103|dbj|BAJ33917.1| unnamed protein product [Thellungiella halophila]
Length = 375
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 264/410 (64%), Positives = 309/410 (75%), Gaps = 44/410 (10%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
T+ T VYI VIEDV++KVR+EF+NNG PGESVLNELQGIWEMKM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLNELQGIWEMKMMQAGVLSGPIERSSA 63
Query: 59 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 118
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPTPLQTP+
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPL---------------- 104
Query: 119 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
TPLPGTADNS+ YNIPTGSSDYPTP +++G N +AK GRPS YM PP SPW NPR
Sbjct: 105 --PTPLPGTADNSSMYNIPTGSSDYPTPGTENGSNPDAK---GRPSPYMQPP-SPWTNPR 158
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237
+DVNVAYV+GRDE +RG S+Q TQD F S GKRKR+D AQY NGG +IPQQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSNGKRKRDDSSAQYQNGG-SIPQQDG 213
Query: 238 AGDAMSEIFELEVSEFPGRQDSVT-TANREIFANLASSSVKIPQLDGPIPDPYDDVLSTP 296
A DAM + + G +T NR+ + SS KIPQ+DGP+PDPYD++LSTP
Sbjct: 214 ASDAMPK------ANIEGDTLCITLVGNRKFPRDFICSSSKIPQVDGPMPDPYDEILSTP 267
Query: 297 NIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQG 356
NIY+YQG +ED+N TPAPN+IQASTP V QND EDD++ ++DDDELDD++ G
Sbjct: 268 NIYSYQGP-SEDFNDGRTPAPNEIQASTP-VAAQNDIIEDDEELLNEDDDDDELDDLESG 325
Query: 357 EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
E++NTQHLVLAQFDKVTRTKSRWKC LKDGIMHIN+KDILFNKA GEFDF
Sbjct: 326 EDMNTQHLVLAQFDKVTRTKSRWKCNLKDGIMHINDKDILFNKAAGEFDF 375
>gi|8778565|gb|AAF79573.1|AC022464_31 F22G5.18 [Arabidopsis thaliana]
Length = 475
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 251/430 (58%), Positives = 299/430 (69%), Gaps = 63/430 (14%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
T+ T VYI VIEDV++KVR+EF+NNG PGESVL+ELQGIWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 59 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 118
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT------------------PLQT 102
Query: 119 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYM----------- 166
P TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K+ RPS YM
Sbjct: 103 PLPTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKA---RPSPYMLCSETAYLGGL 159
Query: 167 ---------PPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRK 217
PPPSPW NPR +DVNVAYV+GRDE +RG S+Q TQD F S+GKRK
Sbjct: 160 QKLRLSTLLQPPPSPWTNPR----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRK 215
Query: 218 REDFPAQYHNGGYNIPQQDGAGDAMSEI-FELEVSEFPGRQDSVTTANREIFANLASSSV 276
R+D A Y NGG +IPQQDGA DA+ E FE +R+I +L SS
Sbjct: 216 RDDSSAHYQNGG-SIPQQDGASDAIPEANFECAALRI------TYVGDRKIPRDLIGSSS 268
Query: 277 KIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAED 336
KIPQ+DGP+PDPYD++LSTPNIY+YQG NE++N TPAPN+IQ STP V ND ED
Sbjct: 269 KIPQVDGPMPDPYDEMLSTPNIYSYQGP-NEEFNEARTPAPNEIQTSTPVAVP-NDIIED 326
Query: 337 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 396
D++ ++DDDELDD++ GE++NTQHLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KDIL
Sbjct: 327 DEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDIL 386
Query: 397 FNKATGEFDF 406
FNKA+ D
Sbjct: 387 FNKASSTSDL 396
>gi|30680148|ref|NP_850937.1| Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana]
gi|30680153|ref|NP_172228.3| Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana]
gi|2826884|emb|CAA11525.1| transcription factor IIA large subunit [Arabidopsis thaliana]
gi|39545932|gb|AAR28029.1| TFIIA-L1 [Arabidopsis thaliana]
gi|222423282|dbj|BAH19617.1| AT1G07480 [Arabidopsis thaliana]
gi|225897890|dbj|BAH30277.1| hypothetical protein [Arabidopsis thaliana]
gi|332190011|gb|AEE28132.1| Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana]
gi|332190012|gb|AEE28133.1| Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana]
Length = 375
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 250/410 (60%), Positives = 302/410 (73%), Gaps = 44/410 (10%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
T+ T VYI VIEDV++KVR+EF+NNG PGESVL+ELQGIWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 59 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 118
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPTPLQTP+
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPL---------------- 104
Query: 119 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K+ SPW NPR
Sbjct: 105 --PTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKARPSPYMPPP----SPWTNPR 158
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237
+DVNVAYV+GRDE +RG S+Q TQD F S+GKRKR+D Y NGG +IPQQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGG-SIPQQDG 213
Query: 238 AGDAMSEI-FELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTP 296
AGDA+ E FE + + +R++ + SSS KIPQ+DGP+PDPYD++LSTP
Sbjct: 214 AGDAIPEANFECDAFRI------TSIGDRKVPRDFFSSSSKIPQVDGPMPDPYDEMLSTP 267
Query: 297 NIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQG 356
NIY+YQG +E++N TPAPN+IQ STP V QND EDD++ ++DDDELDD++ G
Sbjct: 268 NIYSYQGP-SEEFNEARTPAPNEIQTSTPVAV-QNDIIEDDEELLNEDDDDDELDDLESG 325
Query: 357 EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
E++NTQHLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKA GEFDF
Sbjct: 326 EDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKAAGEFDF 375
>gi|18390773|ref|NP_563790.1| transcription initiation factor TFIIA large subunit [Arabidopsis
thaliana]
gi|15983370|gb|AAL11553.1|AF424559_1 At1g07470/F22G5_13 [Arabidopsis thaliana]
gi|14532726|gb|AAK64164.1| putative transcription factor IIA large subunit [Arabidopsis
thaliana]
gi|15146226|gb|AAK83596.1| At1g07470/F22G5_13 [Arabidopsis thaliana]
gi|21554033|gb|AAM63114.1| transcription factor IIA large subunit [Arabidopsis thaliana]
gi|22136784|gb|AAM91736.1| putative transcription factor IIA large subunit [Arabidopsis
thaliana]
gi|39545872|gb|AAR27999.1| TFIIA-L2 [Arabidopsis thaliana]
gi|332190008|gb|AEE28129.1| transcription initiation factor TFIIA large subunit [Arabidopsis
thaliana]
Length = 375
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 248/410 (60%), Positives = 295/410 (71%), Gaps = 44/410 (10%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
T+ T VYI VIEDV++KVR+EF+NNG PGESVL+ELQGIWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 59 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 118
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT------------------PLQT 102
Query: 119 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
P TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K+ SPW NPR
Sbjct: 103 PLPTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKARPSPYMPPP----SPWTNPR 158
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237
+DVNVAYV+GRDE +RG S+Q TQD F S+GKRKR+D A Y NGG +IPQQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSAHYQNGG-SIPQQDG 213
Query: 238 AGDAMSEI-FELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTP 296
A DA+ E FE +R+I +L SS KIPQ+DGP+PDPYD++LSTP
Sbjct: 214 ASDAIPEANFECAALRI------TYVGDRKIPRDLIGSSSKIPQVDGPMPDPYDEMLSTP 267
Query: 297 NIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQG 356
NIY+YQG NE++N TPAPN+IQ STP V ND EDD++ ++DDDELDD++ G
Sbjct: 268 NIYSYQGP-NEEFNEARTPAPNEIQTSTPVAVP-NDIIEDDEELLNEDDDDDELDDLESG 325
Query: 357 EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
E++NTQHLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKATGEFDF
Sbjct: 326 EDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKATGEFDF 375
>gi|297843536|ref|XP_002889649.1| hypothetical protein ARALYDRAFT_470771 [Arabidopsis lyrata subsp.
lyrata]
gi|297335491|gb|EFH65908.1| hypothetical protein ARALYDRAFT_470771 [Arabidopsis lyrata subsp.
lyrata]
Length = 373
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 253/410 (61%), Positives = 297/410 (72%), Gaps = 46/410 (11%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
T+ T VYI VIEDV++KVR+EF+NNG PGESVL+ELQGIWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 59 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 118
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT------------------PLQT 102
Query: 119 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
P TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K GR S PPPSPW NPR
Sbjct: 103 PLPTPLPGTADNSSIYNIPTGSSDYPTPGNENGVNLDVK---GRSSP-YMPPPSPWANPR 158
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237
+DVNVAYV+GRDE +RG S+Q TQD +S+GKRKR+D A Y NGG +I QQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDL--LSSGKRKRDDSAAHYQNGG-SILQQDG 211
Query: 238 AGDAMSEI-FELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTP 296
A DA+ + FE +R I + SS KIPQ+DGP+PDPYD++LSTP
Sbjct: 212 ASDAIPKANFECTALRI------TNVGDRNIARDFICSSSKIPQVDGPMPDPYDEMLSTP 265
Query: 297 NIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQG 356
NIY+YQG NED+N TPAPN+IQ STP V QND EDD++ ++DDDELDD+D G
Sbjct: 266 NIYSYQGP-NEDFNEARTPAPNEIQTSTPVAV-QNDIVEDDEELLNEDDDDDELDDLDSG 323
Query: 357 EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
E++NTQHLVLAQFDKVTRTKSRWKC LKDGIMHIN+KDILFNKATGEFDF
Sbjct: 324 EDMNTQHLVLAQFDKVTRTKSRWKCNLKDGIMHINDKDILFNKATGEFDF 373
>gi|297849042|ref|XP_002892402.1| transcription factor IIA large subunit [Arabidopsis lyrata subsp.
lyrata]
gi|297338244|gb|EFH68661.1| transcription factor IIA large subunit [Arabidopsis lyrata subsp.
lyrata]
Length = 375
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 254/413 (61%), Positives = 305/413 (73%), Gaps = 50/413 (12%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
T+ T VYI VIEDV++KVR+EF+NNG PGESVL+ELQGIWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 59 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 118
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPTPLQTP+
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPL---------------- 104
Query: 119 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
TPLPGTADNS+ YNIPTGSSDY TP +++G N + K GRPS PPPSPW NPR
Sbjct: 105 --PTPLPGTADNSSMYNIPTGSSDYTTPGTENGVNLDVK---GRPSP-YMPPPSPWANPR 158
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237
+DVNVAYV+GRDE +RG S+Q TQD F S+GKRKR+D Y NGG +IPQQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGG-SIPQQDG 213
Query: 238 AGD----AMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVL 293
A D A E + L ++ + +R++ + SS KIPQ+DGP+PDPYD++L
Sbjct: 214 ASDTIPKANFECYALRIT---------SVGDRKVPRDFFCSSSKIPQVDGPMPDPYDEML 264
Query: 294 STPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDV 353
STPNIY+YQG +ED+N TPAPN+IQ STP V QN+ EDD++ ++DDDELDD+
Sbjct: 265 STPNIYSYQGP-SEDFNEARTPAPNEIQTSTPVTV-QNNIVEDDEELLNEDDDDDELDDL 322
Query: 354 DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+ GE++NTQHLVLAQFDKVTRTKSRWKC LKDGIMHIN+KDILFNKATGEFDF
Sbjct: 323 ESGEDMNTQHLVLAQFDKVTRTKSRWKCNLKDGIMHINDKDILFNKATGEFDF 375
>gi|158828198|gb|ABW81076.1| TF1 [Cleome spinosa]
Length = 385
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 253/430 (58%), Positives = 295/430 (68%), Gaps = 72/430 (16%)
Query: 2 ATSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQG-------------------I 41
A++ T +YI VIEDVI+KVRDEF+NNG PGESVLN+LQG I
Sbjct: 3 ASTTTSALYIHVIEDVINKVRDEFINNGGPGESVLNDLQGMFVSGFWFVSSTWMLVCPAI 62
Query: 42 WEMKMIQAGVI---IDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPL 98
WEMKM+ AGVI I+R+SAPK P PGGP+T HDLNVPYEG EEYETPTAE+LFPPTPL
Sbjct: 63 WEMKMMHAGVICGPIERSSAPK-PIPGGPLT--HDLNVPYEGAEEYETPTAEMLFPPTPL 119
Query: 99 QTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKS 157
TP+ GTADNS+ YNIPTGSS YPTPAS++G + K
Sbjct: 120 PTPLP----------------------GTADNSSMYNIPTGSSGYPTPASENGNVPDLKG 157
Query: 158 GNGRPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRK 217
P NPR +DVNVAYV G++ A+RG S+Q LTQDFF S+ KRK
Sbjct: 158 SPSPYMPSSSPW----SNPR----LDVNVAYVNGQNVAERGNSNQQLTQDFFVPSSVKRK 209
Query: 218 REDFPAQYHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTA-NREIFANLASSSV 276
REDFPAQY NGG +IPQQDGA DA+S+ E E SVT +R + N SSS+
Sbjct: 210 REDFPAQYPNGG-SIPQQDGANDAVSKGTEGE---------SVTNEFSRNVSGNFISSSL 259
Query: 277 KIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAED 336
KIPQ+DGP+PDPYDD+LSTPNIY+YQGV NEDYN TPA N+ QAST + ED
Sbjct: 260 KIPQVDGPMPDPYDDILSTPNIYSYQGV-NEDYNEAKTPALNETQAST---LVAAQNDED 315
Query: 337 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 396
DD+ ++DDDELDD+D GE++NTQHLVLAQFDKV+RTKSRWKC LKDGIMHIN+KDIL
Sbjct: 316 DDELLNEDDDDDELDDLDSGEDVNTQHLVLAQFDKVSRTKSRWKCTLKDGIMHINDKDIL 375
Query: 397 FNKATGEFDF 406
FNKATGEFDF
Sbjct: 376 FNKATGEFDF 385
>gi|8778543|gb|AAF79551.1|AC022464_9 F22G5.14 [Arabidopsis thaliana]
Length = 488
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 242/422 (57%), Positives = 295/422 (69%), Gaps = 56/422 (13%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
T+ T VYI VIEDV++KVR+EF+NNG PGESVL+ELQGIWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 59 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 118
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT------------------PLQT 102
Query: 119 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
P TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K+ PPSPW NPR
Sbjct: 103 PLPTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKARPSPYMP----PPSPWTNPR 158
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237
+DVNVAYV+GRDE +RG S+Q TQD F S+GKRKR+D Y NGG +IPQQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGG-SIPQQDG 213
Query: 238 AGDAMSEIF-------ELEVSEFPGRQDSVTT-ANREIFANLASSSVKIPQLDGPIPDPY 289
AGDA+ E + + F +T+ +R++ + SSS KIPQ+DGP+PDPY
Sbjct: 214 AGDAIPEYLVDTPDWSTILQANFECDAFRITSIGDRKVPRDFFSSSSKIPQVDGPMPDPY 273
Query: 290 DDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDE 349
D++LSTPNIY+YQG +E++N TPAPN+IQ STP V QND EDD++ ++DDDE
Sbjct: 274 DEMLSTPNIYSYQG-PSEEFNEARTPAPNEIQTSTPVAV-QNDIIEDDEELLNEDDDDDE 331
Query: 350 LDDVDQGEELNTQHLVLAQFDK-----------VTRTKSRWKCALKDGIMHINNKDILFN 398
LDD++ GE++NTQHLVLAQFDK VTRTKSRWKC+LKDGIMHIN+KDILFN
Sbjct: 332 LDDLESGEDMNTQHLVLAQFDKVMTLLYSQVLDVTRTKSRWKCSLKDGIMHINDKDILFN 391
Query: 399 KA 400
K
Sbjct: 392 KV 393
>gi|312283537|dbj|BAJ34634.1| unnamed protein product [Thellungiella halophila]
Length = 330
Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 232/368 (63%), Positives = 272/368 (73%), Gaps = 43/368 (11%)
Query: 44 MKMIQAGVI---IDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQT 100
MKM+QAGV+ I+R+SA K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPTPLQT
Sbjct: 1 MKMMQAGVLSGPIERSSAQK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQT 57
Query: 101 PIQTPLPGSTPLPGSTPLPGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGN 159
P+ TPLPGTADNS+ YNIPTGSSDYPTP +++G N +AK
Sbjct: 58 PL------------------PTPLPGTADNSSMYNIPTGSSDYPTPGTENGSNPDAK--- 96
Query: 160 GRPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKRE 219
GRPS YM PP SPW NPR +DVNVAYV+GRDE +RG S+Q TQD F S GKRKR+
Sbjct: 97 GRPSPYMQPP-SPWTNPR----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSNGKRKRD 151
Query: 220 DFPAQYHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVT-TANREIFANLASSSVKI 278
D AQY NGG +IPQQDGA DAM + + G +T NR+ + SS KI
Sbjct: 152 DSSAQYQNGG-SIPQQDGASDAMPK------ANIEGDTLCITLVGNRKFPRDFICSSSKI 204
Query: 279 PQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDD 338
PQ+DGP+PDPYD++LSTPNIY+YQG +ED+N TPAPN+IQASTP V QND EDD+
Sbjct: 205 PQVDGPMPDPYDEILSTPNIYSYQGP-SEDFNDGRTPAPNEIQASTP-VAAQNDIIEDDE 262
Query: 339 DEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFN 398
+ ++DDDELDD++ GE++NTQHLVLAQFDKVTRTKSRWKC LKDGIMHIN+KDILFN
Sbjct: 263 ELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCNLKDGIMHINDKDILFN 322
Query: 399 KATGEFDF 406
KA GEFDF
Sbjct: 323 KAAGEFDF 330
>gi|413948830|gb|AFW81479.1| hypothetical protein ZEAMMB73_123227 [Zea mays]
Length = 437
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 225/419 (53%), Positives = 269/419 (64%), Gaps = 55/419 (13%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTSAPKQPAPG 65
VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I IDRT A G
Sbjct: 53 VYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTKAAAASVGG 112
Query: 66 --GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGST 122
G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 113 TTGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT------------- 159
Query: 123 PLPGTADNSTYNIPTGSSDY-PTPASDSGGNTEAKSGN---GRPSSYM--PPPPSPWMNP 176
D + YNIPTG SDY P+P SD + G PS YM PPPSPWMN
Sbjct: 160 ------DTAMYNIPTGPSDYAPSPISDVRNGMAINGADPTAGHPSPYMFLQPPPSPWMNQ 213
Query: 177 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 236
RP L VDVNVAYVEGR++ DRG QPLTQDF MS+GKRKR+++P Q +G + +PQQD
Sbjct: 214 RP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLMMSSGKRKRDEYPGQLPSGSF-VPQQD 271
Query: 237 GAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTP 296
G+ D +I E VS+ Q + N+ + V IPQ DG I D Y+D P
Sbjct: 272 GSAD---QIVEFVVSKENANQLWSSIGNKLETPTKTITPV-IPQRDG-IQDNYNDQFFFP 326
Query: 297 NIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVT--------QNDAAEDDDDEPLNENDDD 348
GV EDYN A + +A TPAV T +D +DDD+ PLNE+DD+
Sbjct: 327 ------GVPTEDYNTPGESA--EYRAPTPAVGTPKQRNDAGDDDNDDDDDEPPLNEDDDE 378
Query: 349 ELDDVDQGE-ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
ELDD++QGE E NTQHLVLAQFDKV+RTK+RWKC LKDGIMH+N +D+LFNKATGEFDF
Sbjct: 379 ELDDLEQGEDEPNTQHLVLAQFDKVSRTKNRWKCTLKDGIMHLNGRDVLFNKATGEFDF 437
>gi|1429226|emb|CAA67368.1| TFIIA [Arabidopsis thaliana]
Length = 375
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 221/409 (54%), Positives = 274/409 (66%), Gaps = 42/409 (10%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
T+ T VYI VIEDV++KVR+EF+NNG PGESVL+ELQGIWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 59 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 118
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT------------------PLQT 102
Query: 119 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
P TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K+ PPSPW NPR
Sbjct: 103 PLPTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKARPSPYMP----PPSPWTNPR 158
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237
+DVNVAYV+GRDE ++ T L + + G + +
Sbjct: 159 ----LDVNVAYVDGRDEPEKETLTSSLRRIYLCHPLGNENVMILLDIIKMVDLYLNRMVQ 214
Query: 238 AGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPN 297
A ++ FE + + +R++ + SSS KIPQ+DGP+PDPYD++LSTPN
Sbjct: 215 AMLSLRPNFECDAFRI------TSIGDRKVPRDFFSSSSKIPQVDGPMPDPYDEMLSTPN 268
Query: 298 IYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGE 357
IY+YQG +E++N TPAPN+ Q STP V QND EDD++ ++DDDELDD++ GE
Sbjct: 269 IYSYQG-PSEEFNEARTPAPNEYQTSTPVAV-QNDIIEDDEELLNEDDDDDELDDLESGE 326
Query: 358 ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++NTQHLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKA GEFDF
Sbjct: 327 DMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKAAGEFDF 375
>gi|226495785|ref|NP_001148644.1| transcription factor/ transcription initiation factor [Zea mays]
gi|195621078|gb|ACG32369.1| transcription factor/ transcription initiation factor [Zea mays]
Length = 390
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 226/424 (53%), Positives = 271/424 (63%), Gaps = 52/424 (12%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MA+S VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I IDRT
Sbjct: 1 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTK 60
Query: 58 APKQPAPG--GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 114
A G G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 AAAASVGGTTGTTAPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 115
Query: 115 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPS 171
D + YNIPTG SDY P+P SD +G S PPPS
Sbjct: 116 --------------DTAMYNIPTGPSDYAPSPISDVRNGMAINGADPTAGHPSPYMPPPS 161
Query: 172 PWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYN 231
PWMN RP L VDVNVAYVEGR++ DRG QPLTQDFF MS+GKRKR+++P Q +G +
Sbjct: 162 PWMNQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFFMMSSGKRKRDEYPGQLPSGSF- 219
Query: 232 IPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDD 291
+PQQDG+ D +I E VS+ Q + N+ + V IPQ DG I D Y+D
Sbjct: 220 VPQQDGSAD---QIVEFVVSKENVNQLWSSIGNKLETPTKTITPV-IPQRDG-IQDNYND 274
Query: 292 VLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVT--------QNDAAEDDDDEPLN 343
P GV EDYN A + +A TPAV T +D +DDD+ PLN
Sbjct: 275 QFFFP------GVPTEDYNTPGESA--EYRAPTPAVGTPKQRNDAGDDDNDDDDDEPPLN 326
Query: 344 ENDDDELDDVDQGE-ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATG 402
E+DD+ELDD++QGE E NTQHLVLAQFDKV+RTK+RWKC LKDGIMH+N +D+LFNKATG
Sbjct: 327 EDDDEELDDLEQGEDEPNTQHLVLAQFDKVSRTKNRWKCXLKDGIMHLNGRDVLFNKATG 386
Query: 403 EFDF 406
EFDF
Sbjct: 387 EFDF 390
>gi|223973831|gb|ACN31103.1| unknown [Zea mays]
Length = 390
Score = 323 bits (828), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 225/424 (53%), Positives = 270/424 (63%), Gaps = 52/424 (12%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MA+S VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I IDRT
Sbjct: 1 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTK 60
Query: 58 APKQPAPG--GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 114
A G G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 AAAASVGGTTGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 115
Query: 115 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPS 171
D + YNIPTG SDY P+P SD +G S PPPS
Sbjct: 116 --------------DTAMYNIPTGPSDYAPSPISDVRNGMAINGADPTAGHPSPYMPPPS 161
Query: 172 PWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYN 231
PWMN RP L VDVNVAYVEGR++ DRG QPLTQDF MS+GKRKR+++P Q +G +
Sbjct: 162 PWMNQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLMMSSGKRKRDEYPGQLPSGSF- 219
Query: 232 IPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDD 291
+PQQDG+ D +I E VS+ Q + N+ + V IPQ DG I D Y+D
Sbjct: 220 VPQQDGSAD---QIVEFVVSKENANQLWSSIGNKLETPTKTITPV-IPQRDG-IQDNYND 274
Query: 292 VLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVT--------QNDAAEDDDDEPLN 343
P GV EDYN A + +A TPAV T +D +DDD+ PLN
Sbjct: 275 QFFFP------GVPTEDYNTPGESA--EYRAPTPAVGTPKQRNDAGDDDNDDDDDEPPLN 326
Query: 344 ENDDDELDDVDQGE-ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATG 402
E+DD+ELDD++QGE E NTQHLVLAQFDKV+RTK+RWKC LKDGIMH+N +D+LFNKATG
Sbjct: 327 EDDDEELDDLEQGEDEPNTQHLVLAQFDKVSRTKNRWKCTLKDGIMHLNGRDVLFNKATG 386
Query: 403 EFDF 406
EFDF
Sbjct: 387 EFDF 390
>gi|115463003|ref|NP_001055101.1| Os05g0292200 [Oryza sativa Japonica Group]
gi|113578652|dbj|BAF17015.1| Os05g0292200 [Oryza sativa Japonica Group]
gi|125551677|gb|EAY97386.1| hypothetical protein OsI_19309 [Oryza sativa Indica Group]
gi|215694500|dbj|BAG89493.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 394
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 227/432 (52%), Positives = 277/432 (64%), Gaps = 64/432 (14%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MA+S VYI VI+DVISKVRD+F++ G G++VLNELQ +WEMKM+ G I IDR+
Sbjct: 1 MASSNVSTVYISVIDDVISKVRDDFISYGVGDAVLNELQALWEMKMLHCGAISGTIDRSK 60
Query: 58 APKQPAPGGP----ITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPL 112
A P+ G P PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 AAPAPSAGTPGAGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT--- 117
Query: 113 PGSTPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASDSGGNTEAKSG----NGRPSSYMP 167
D YNIPTG SDY P+P SD N A +G GRPS YMP
Sbjct: 118 ----------------DAGMYNIPTGPSDYAPSPISDVR-NGMAMNGADPKTGRPSPYMP 160
Query: 168 PPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHN 227
PP WM RP L VDVNVAYVE R++ DR LT+DF MS+GKRKR+++P Q +
Sbjct: 161 PPSP-WMTQRP-LGVDVNVAYVENREDPDRTGQPPQLTKDFLMMSSGKRKRDEYPGQLPS 218
Query: 228 GGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVK------IPQL 281
G + +PQQDG+ D +I E VS+ +Q + N++ A SS+ + IPQ
Sbjct: 219 GSF-VPQQDGSAD---QIVEFVVSKDNAQQLWSSIVNKQGTATKESSTKETIIAPTIPQR 274
Query: 282 DGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPA-PNDIQASTPAVVT---QNDAAEDD 337
DG D Y+D + +QGV EDYN TP ++ +A TPAV T +ND DD
Sbjct: 275 DGM--DDYNDP------FYFQGVPTEDYN---TPGESSEYRAPTPAVGTPKPRNDVG-DD 322
Query: 338 DDEPLNENDDDELDDVD--QGE-ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 394
D+ PLNE+DDD+ + D QGE E NTQHLVLAQFDKVTRTK+RWKC LKDGIMH+N +D
Sbjct: 323 DEPPLNEDDDDDDELDDLEQGEDEPNTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRD 382
Query: 395 ILFNKATGEFDF 406
+LFNKATGEFDF
Sbjct: 383 VLFNKATGEFDF 394
>gi|413948829|gb|AFW81478.1| transcription factor/ transcription initiation factor [Zea mays]
Length = 434
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 222/416 (53%), Positives = 266/416 (63%), Gaps = 52/416 (12%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTSAPKQPAPG 65
VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I IDRT A G
Sbjct: 53 VYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTKAAAASVGG 112
Query: 66 --GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGST 122
G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 113 TTGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT------------- 159
Query: 123 PLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPSPWMNPRPP 179
D + YNIPTG SDY P+P SD +G S PPPSPWMN RP
Sbjct: 160 ------DTAMYNIPTGPSDYAPSPISDVRNGMAINGADPTAGHPSPYMPPPSPWMNQRP- 212
Query: 180 LSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAG 239
L VDVNVAYVEGR++ DRG QPLTQDF MS+GKRKR+++P Q +G + +PQQDG+
Sbjct: 213 LGVDVNVAYVEGREDPDRGVQPQPLTQDFLMMSSGKRKRDEYPGQLPSGSF-VPQQDGSA 271
Query: 240 DAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIY 299
D +I E VS+ Q + N+ + V IPQ DG I D Y+D P
Sbjct: 272 D---QIVEFVVSKENANQLWSSIGNKLETPTKTITPV-IPQRDG-IQDNYNDQFFFP--- 323
Query: 300 NYQGVVNEDYNIVNTPAPNDIQASTPAVVT--------QNDAAEDDDDEPLNENDDDELD 351
GV EDYN A + +A TPAV T +D +DDD+ PLNE+DD+ELD
Sbjct: 324 ---GVPTEDYNTPGESA--EYRAPTPAVGTPKQRNDAGDDDNDDDDDEPPLNEDDDEELD 378
Query: 352 DVDQGE-ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
D++QGE E NTQHLVLAQFDKV+RTK+RWKC LKDGIMH+N +D+LFNKATGEFDF
Sbjct: 379 DLEQGEDEPNTQHLVLAQFDKVSRTKNRWKCTLKDGIMHLNGRDVLFNKATGEFDF 434
>gi|357134151|ref|XP_003568681.1| PREDICTED: uncharacterized protein LOC100827776 [Brachypodium
distachyon]
Length = 400
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 224/436 (51%), Positives = 276/436 (63%), Gaps = 66/436 (15%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MA+ VYI VI+DVI+KVR+EF++ G G++VLNELQ +WEMKM+Q G I IDR
Sbjct: 1 MASGNVSTVYISVIDDVIAKVREEFISYGVGDAVLNELQALWEMKMLQCGAISGNIDRAR 60
Query: 58 APKQPAPGGPIT-------PVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGS 109
AP P GG PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 APAAPGAGGGGAPGAGSTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT 120
Query: 110 TPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASDSGGNTEAKSGN----GRPSS 164
+ YNIPTG SDY P+P SD N A +G+ GRPS
Sbjct: 121 -------------------EAGMYNIPTGPSDYAPSPISDMR-NGMAMNGSDPKTGRPSP 160
Query: 165 YMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQ 224
YM PP SPWMN RP L VDVNVAY E R++ DR +T+DF MS+GKRKR+++P Q
Sbjct: 161 YMQPP-SPWMNQRP-LGVDVNVAYEETREDPDRAVQPPQMTKDFLMMSSGKRKRDEYPGQ 218
Query: 225 YHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVK------I 278
+G + +PQQDG D EI E VS+ +Q + N++ A ASS+ + +
Sbjct: 219 LPSGSF-MPQQDGNSD---EIVEFVVSKDNAQQVWNSIMNKQESATKASSTQETTMTQVL 274
Query: 279 PQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPA-PNDIQASTPAVVT---QNDAA 334
PQ DG I D Y+D P GV EDYN TP ++ + TPAV T +ND
Sbjct: 275 PQRDG-IQDEYNDQFFFP------GVPTEDYN---TPGESSEYRTPTPAVATPKPRNDTG 324
Query: 335 EDDDDEP-LNENDDDELDDV---DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
+DDDDEP LNE+DDD+ + + +E NTQHLVLAQFDKVTRTK+RWKC LKDGIMH+
Sbjct: 325 DDDDDEPPLNEDDDDDDELDDLEHEPDEPNTQHLVLAQFDKVTRTKNRWKCTLKDGIMHL 384
Query: 391 NNKDILFNKATGEFDF 406
N +D+LFNKA+GEFDF
Sbjct: 385 NGRDVLFNKASGEFDF 400
>gi|413944877|gb|AFW77526.1| transcription factor/ transcription initiation factor [Zea mays]
Length = 438
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 223/427 (52%), Positives = 265/427 (62%), Gaps = 55/427 (12%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MA+S VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I I+RT
Sbjct: 46 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIERTK 105
Query: 58 APKQPAPGGPIT--PVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 114
A A G T PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 106 AAAASAGGTSGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 160
Query: 115 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPS 171
D YNIPTG SDY P+P SD +G S PPPS
Sbjct: 161 --------------DTGMYNIPTGPSDYAPSPISDIRNGMTINGADPKAGRPSPYMPPPS 206
Query: 172 PWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYN 231
PWMN RP L VDVNVAYVEGR++ DRG QPLTQDF TMS+GKRKR+++P Q +G +
Sbjct: 207 PWMNQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLTMSSGKRKRDEYPGQLPSGSF- 264
Query: 232 IPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDD 291
+PQQDG+ D +I E VS+ Q + N+ + V IPQ DG I D Y+D
Sbjct: 265 VPQQDGSAD---QIVEFVVSKENANQHWSSIINKLETPTKTVTPV-IPQCDG-IQDDYND 319
Query: 292 VLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVT---------QNDAAEDDDDEPL 342
P GV EDYN A + +A TPAV T ND +DD++ PL
Sbjct: 320 QFFFP------GVPTEDYNTPGESA--EYRAPTPAVGTPKPRNDAGDDNDDDDDDEEPPL 371
Query: 343 NENDDDELDDVDQGEEL---NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 399
NE+DDD+ D D E NTQHLVLAQFDKVTRTK+RWKC LKDGIMH+N +D+LFNK
Sbjct: 372 NEDDDDDDDLDDLEEGEDEPNTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNK 431
Query: 400 ATGEFDF 406
ATGEFDF
Sbjct: 432 ATGEFDF 438
>gi|226504288|ref|NP_001148522.1| LOC100282138 [Zea mays]
gi|195619992|gb|ACG31826.1| transcription factor/ transcription initiation factor [Zea mays]
Length = 393
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 223/427 (52%), Positives = 265/427 (62%), Gaps = 55/427 (12%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MA+S VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I I+RT
Sbjct: 1 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIERTK 60
Query: 58 APKQPAPGGPIT--PVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 114
A A G T PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 AAAASAGGTSGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 115
Query: 115 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPS 171
D YNIPTG SDY P+P SD +G S PPPS
Sbjct: 116 --------------DTGMYNIPTGPSDYAPSPISDIRNGMTINGADPKAGRPSPYMPPPS 161
Query: 172 PWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYN 231
PWMN RP L VDVNVAYVEGR++ DRG QPLTQDF TMS+GKRKR+++P Q +G +
Sbjct: 162 PWMNQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLTMSSGKRKRDEYPGQLPSGSF- 219
Query: 232 IPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDD 291
+PQQDG+ D +I E VS+ Q + N+ + V IPQ DG I D Y+D
Sbjct: 220 VPQQDGSAD---QIVEFVVSKENANQHWSSIINKLETPTKTVTPV-IPQCDG-IQDDYND 274
Query: 292 VLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVT---------QNDAAEDDDDEPL 342
P GV EDYN A + +A TPAV T ND +DD++ PL
Sbjct: 275 QFFFP------GVPTEDYNTPGESA--EYRAPTPAVGTPKPRNDAGDDNDDDDDDEEPPL 326
Query: 343 NENDDDELDDVDQGEEL---NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 399
NE+DDD+ D D E NTQHLVLAQFDKVTRTK+RWKC LKDGIMH+N +D+LFNK
Sbjct: 327 NEDDDDDDDLDDLEEGEDEPNTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNK 386
Query: 400 ATGEFDF 406
ATGEFDF
Sbjct: 387 ATGEFDF 393
>gi|124360553|gb|ABD33143.2| Transcription factor IIA, helical [Medicago truncatula]
Length = 317
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 168/259 (64%), Positives = 185/259 (71%), Gaps = 33/259 (12%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG--PGESVLNELQGIWEMKMIQAGVI---IDR 55
MA S T VYI VIEDV+ KVRDEFVN G PG+ VL ELQ IWE K IQAG + I+R
Sbjct: 1 MAASTTSQVYIDVIEDVMVKVRDEFVNTGASPGDEVLRELQAIWESKCIQAGAVLGPIER 60
Query: 56 TSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGS 115
+ +P PGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG PG
Sbjct: 61 NTGVNRPMPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG----PGE 116
Query: 116 TPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPW-- 173
TP YNIPTG SDY + +D+GGN + K G ++M PPPSPW
Sbjct: 117 TP--------------NYNIPTGPSDY-SSGNDAGGNADVKGGR---QAFM-PPPSPWMN 157
Query: 174 MNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIP 233
MN RPPL DVNVAYVEGRDEADRG S+QP+TQDFFTM+ GKRKR D P Y GGY IP
Sbjct: 158 MNQRPPL--DVNVAYVEGRDEADRGASNQPMTQDFFTMTGGKRKRNDLPPPYDAGGY-IP 214
Query: 234 QQDGAGDAMSEIFELEVSE 252
QQDGAGDA+S FE+E E
Sbjct: 215 QQDGAGDAVSGDFEIESRE 233
>gi|116789263|gb|ABK25179.1| unknown [Picea sitchensis]
Length = 398
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 190/410 (46%), Positives = 238/410 (58%), Gaps = 67/410 (16%)
Query: 18 ISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTSAPKQPAPGGPITPVHDL 74
I +R EF N G +SVLNE+Q +WE+KM+Q G I ID S PITPVHDL
Sbjct: 35 IKSLRPEFQNEGLDDSVLNEVQALWELKMMQNGAIQGPIDHASNSALRGANAPITPVHDL 94
Query: 75 NVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYN 134
NVPYE TEEYETPTAE+LFPPTP+QTP+QTPLPG TA+ Y
Sbjct: 95 NVPYEPTEEYETPTAEMLFPPTPVQTPMQTPLPG------------------TAEPVMYQ 136
Query: 135 -IPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGRD 193
P G + P + G + EAK G RP+ YM PP + WM+ +P L VDVN+AY E RD
Sbjct: 137 YFPPGPGE-PLATPELGIDPEAKIG--RPAPYMQPPAN-WMSQKP-LGVDVNIAYEEERD 191
Query: 194 EADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMSEIFELEVSEF 253
E G S P+T+DFFT+S+GKRKRED P Y GGY IPQQDGAGD E+ + + EF
Sbjct: 192 EMAAGISQPPITKDFFTLSSGKRKREDHPPNYLPGGY-IPQQDGAGDFSWELVQSKEVEF 250
Query: 254 PGRQ-------DSVTTANREIFANLASSSVK-------IPQLDGPIPDPYDDVLSTPNIY 299
++ D R++ L ++ VK IPQ+DG D++ ST
Sbjct: 251 ANQRLTQNCSMDGSMFEKRQMSDPLIAALVKAKCLSLEIPQVDGV----NDNLDST---- 302
Query: 300 NYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAED---DDDEPLNENDDDELDDVDQG 356
V +E Y I+A+ ND A +D+E LN+NDDD D
Sbjct: 303 ----VADEGY----------IEATDQEQQALNDVATSKVSEDEEALNDNDDDPDDLDLTN 348
Query: 357 EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
E+ LVLAQF+KV+RTK+RWKC LKDG+MH+N+KDILF+KATGEFDF
Sbjct: 349 EDPKIDDLVLAQFEKVSRTKNRWKCILKDGVMHLNHKDILFSKATGEFDF 398
>gi|147856331|emb|CAN83895.1| hypothetical protein VITISV_039114 [Vitis vinifera]
Length = 630
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 153/255 (60%), Positives = 172/255 (67%), Gaps = 34/255 (13%)
Query: 3 TSATGMVYIRVIEDVISKVRD----EFVNNGPGESVLNELQGIWEMKMIQAGVI---IDR 55
+S T VY+ VIEDVI+K R +++ G V + IWEMKM+QAGV+ I+R
Sbjct: 4 SSMTSTVYVSVIEDVINKERFCLAFDWIVWEIGSIVFDL---IWEMKMVQAGVVTGPIER 60
Query: 56 TSAPKQPAPG-GPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 114
+ APKQ + P PVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG
Sbjct: 61 SXAPKQTSGAPAPTPPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG------ 114
Query: 115 STPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWM 174
DNS YNIPTG ++YP A D GG T+ KSG P SPWM
Sbjct: 115 ------------MGDNSMYNIPTGPTEYPA-AQDGGGATDMKSGRPPSYMPPP---SPWM 158
Query: 175 NPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQ 234
RPPLSVDVNVAYVEGRDE DRG S QPLTQDFF MS+GKRKREDFP+QYH GY IPQ
Sbjct: 159 QQRPPLSVDVNVAYVEGRDEGDRGNSQQPLTQDFFMMSSGKRKREDFPSQYHTSGY-IPQ 217
Query: 235 QDGAGDAMSEIFELE 249
QDGAGD E+FE+E
Sbjct: 218 QDGAGDPAPEVFEVE 232
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 121/144 (84%), Positives = 128/144 (88%), Gaps = 1/144 (0%)
Query: 257 QDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPA 316
D + ANREIF +A S V+IPQLDGPIPDPY+DVLSTPNIYNYQGVVNEDYNIVNTPA
Sbjct: 319 HDILPKANREIFPQVAGSYVRIPQLDGPIPDPYEDVLSTPNIYNYQGVVNEDYNIVNTPA 378
Query: 317 PNDIQASTPAVVTQNDAAEDDDDE-PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRT 375
PNDIQA TPAV QND +DDDDE PLNENDDD+LDDV QGEELNTQHLVLAQFDKVTRT
Sbjct: 379 PNDIQAGTPAVGIQNDVGDDDDDEPPLNENDDDDLDDVXQGEELNTQHLVLAQFDKVTRT 438
Query: 376 KSRWKCALKDGIMHINNKDILFNK 399
KS+WKC LKDGIMHINNKDILFNK
Sbjct: 439 KSKWKCTLKDGIMHINNKDILFNK 462
>gi|343172888|gb|AEL99147.1| transcription initiation factor TFIIA large subunit, partial
[Silene latifolia]
Length = 278
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 160/291 (54%), Positives = 182/291 (62%), Gaps = 38/291 (13%)
Query: 68 ITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGT 127
+ PVHDLNVPYEGTEEYETPTAE+LFPPTPLQTPIQTPLPG T
Sbjct: 14 VAPVHDLNVPYEGTEEYETPTAEMLFPPTPLQTPIQTPLPG------------------T 55
Query: 128 ADNST-YNIPTGSSDYPTPASDSGG-------NTEAKSGNGRPSSYMPPPPSPWMNPRPP 179
DNS+ YNIPTG N E + +P + R
Sbjct: 56 VDNSSMYNIPTGFQIIQLRTRMKSVVFIMLILNLELEGLVFTCHHLLP-----GLIKRSS 110
Query: 180 LSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAG 239
+ VDVNVAYVE R+E DR ++ Q TQDF T +GKRKR+D QY GGY IPQQDGAG
Sbjct: 111 VGVDVNVAYVENREEGDRRSAQQG-TQDFLTGPSGKRKRDDVLPQYQAGGY-IPQQDGAG 168
Query: 240 DAMSEIFELEV--SEFPGRQDSVTTAN-REIFANLASSSVKIPQLDGPIPDPYDDVLSTP 296
DA EIFELE+ S+ GR+ N + + S KIPQLDGPIPDPYDD+LSTP
Sbjct: 169 DAAPEIFELEIVQSKTSGRKGIANFINGKGHMWHTEGISSKIPQLDGPIPDPYDDILSTP 228
Query: 297 NIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE-PLNEND 346
NIYNYQG VNEDYN+VNTPAP D+QA TP + QND + DDDDE PLNEND
Sbjct: 229 NIYNYQGAVNEDYNVVNTPAP-DMQAGTPVPLAQNDVSNDDDDEPPLNEND 278
>gi|343172890|gb|AEL99148.1| transcription initiation factor TFIIA large subunit, partial
[Silene latifolia]
Length = 278
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 161/291 (55%), Positives = 181/291 (62%), Gaps = 38/291 (13%)
Query: 68 ITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGT 127
+ PVHDLNVPYEGTEEYETPTAE+LFPPTPLQTPIQTPLPG T
Sbjct: 14 VAPVHDLNVPYEGTEEYETPTAEMLFPPTPLQTPIQTPLPG------------------T 55
Query: 128 ADNST-YNIPTGSSDYPTPASDSGG-------NTEAKSGNGRPSSYMPPPPSPWMNPRPP 179
DNS+ YNIPTG N E + +P + R
Sbjct: 56 VDNSSMYNIPTGFQIIQLRTRMKSVVFIMLILNLELEGLVFTCHHLLP-----GLIKRSS 110
Query: 180 LSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAG 239
+ VDVNVAYVE R+E DR S Q TQDF T +GKRKR+D QY GGY IPQQDGAG
Sbjct: 111 VGVDVNVAYVENREEGDR-RSLQQGTQDFLTGPSGKRKRDDVLPQYQAGGY-IPQQDGAG 168
Query: 240 DAMSEIFELEV--SEFPGRQDSVTTAN-REIFANLASSSVKIPQLDGPIPDPYDDVLSTP 296
DA EIFELE+ S+ GR+ N + + S KIPQLDGPIPDPYDD+LSTP
Sbjct: 169 DAAPEIFELEIVQSKTSGRKGIANFINGKGHMWHTEGISSKIPQLDGPIPDPYDDILSTP 228
Query: 297 NIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE-PLNEND 346
NIYNYQG VNEDYN+VNTPAP D+QA TP + QND + DDDDE PLNEND
Sbjct: 229 NIYNYQGAVNEDYNVVNTPAP-DMQAGTPVPLAQNDVSNDDDDEPPLNEND 278
>gi|17065294|gb|AAL32801.1| similar to TFIIA [Arabidopsis thaliana]
gi|30023680|gb|AAP13373.1| At1g07480 [Arabidopsis thaliana]
Length = 218
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 137/222 (61%), Positives = 170/222 (76%), Gaps = 10/222 (4%)
Query: 186 VAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMSEI 245
+AYV+GRDE +RG S+Q TQD F S+GKRKR+D Y NGG +IPQQDGAGDA+ E
Sbjct: 6 LAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGG-SIPQQDGAGDAIPEA 64
Query: 246 -FELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGV 304
FE + + +R++ + SSS KIPQ+DGP+PDPYD++LSTPNIY+YQG
Sbjct: 65 NFECDAFRI------TSIGDRKVPRDFFSSSSKIPQVDGPMPDPYDEMLSTPNIYSYQGP 118
Query: 305 VNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHL 364
+E++N TPAPN+IQ STP V QND EDD++ ++DDDELDD++ GE++NTQHL
Sbjct: 119 -SEEFNEARTPAPNEIQTSTP-VAVQNDIIEDDEELLNEDDDDDELDDLESGEDMNTQHL 176
Query: 365 VLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
VLAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKA GEFDF
Sbjct: 177 VLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKAAGEFDF 218
>gi|413944876|gb|AFW77525.1| hypothetical protein ZEAMMB73_875019 [Zea mays]
Length = 322
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 156/302 (51%), Positives = 187/302 (61%), Gaps = 35/302 (11%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MA+S VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I I+RT
Sbjct: 46 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIERTK 105
Query: 58 APKQPAPGGPIT--PVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 114
A A G T PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 106 AAAASAGGTSGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 160
Query: 115 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPS 171
D YNIPTG SDY P+P SD +G S PPPS
Sbjct: 161 --------------DTGMYNIPTGPSDYAPSPISDIRNGMTINGADPKAGRPSPYMPPPS 206
Query: 172 PWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYN 231
PWMN RP L VDVNVAYVEGR++ DRG QPLTQDF TMS+GKRKR+++P Q +G +
Sbjct: 207 PWMNQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLTMSSGKRKRDEYPGQLPSGSF- 264
Query: 232 IPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDD 291
+PQQDG+ D +I E VS+ Q + N+ + V IPQ DG I D Y+D
Sbjct: 265 VPQQDGSAD---QIVEFVVSKENANQHWSSIINKLETPTKTVTPV-IPQCDG-IQDDYND 319
Query: 292 VL 293
VL
Sbjct: 320 VL 321
>gi|222630980|gb|EEE63112.1| hypothetical protein OsJ_17920 [Oryza sativa Japonica Group]
Length = 331
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 190/424 (44%), Positives = 236/424 (55%), Gaps = 111/424 (26%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
MA+S VYI VI+DVISKVRD+F++ G G++VLNELQ
Sbjct: 1 MASSNVSTVYISVIDDVISKVRDDFISYGVGDAVLNELQA-------------------- 40
Query: 61 QPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPG 120
TP+ TPIQTPLPG+
Sbjct: 41 --------TPLQ---------------------------TPIQTPLPGT----------- 54
Query: 121 STPLPGTADNSTYNIPTGSSDY-PTPASDSGGNTEAKSG----NGRPSSYMPPPPSPWMN 175
D YNIPTG SDY P+P SD N A +G GR S PPPSPWM
Sbjct: 55 --------DAGMYNIPTGPSDYAPSPISDV-RNGMAMNGADPKTGR-PSPYMPPPSPWMT 104
Query: 176 PRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQ 235
R PL VDVNVAYVE R++ DR LT+DF MS+GKRKR+++P Q +G + +PQQ
Sbjct: 105 QR-PLGVDVNVAYVENREDPDRTGQPPQLTKDFLMMSSGKRKRDEYPGQLPSGSF-VPQQ 162
Query: 236 DGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVK------IPQLDGPIPDPY 289
DG+ D +I E VS+ +Q + N++ A SS+ + IPQ DG D Y
Sbjct: 163 DGSAD---QIVEFVVSKDNAQQLWSSIVNKQGTATKESSTKETIIAPTIPQRDG--MDDY 217
Query: 290 DDVLSTPNIYNYQGVVNEDYNIVNTPA-PNDIQASTPAVVT---QNDAAEDDDDEPLN-- 343
+D + +QGV EDY NTP ++ +A TPAV T +ND DDD+ PLN
Sbjct: 218 NDP------FYFQGVPTEDY---NTPGESSEYRAPTPAVGTPKPRNDVG-DDDEPPLNED 267
Query: 344 ENDDDELDDVDQGE-ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATG 402
++DDDELDD++QGE E NTQHLVLAQFDKVTRTK+RWKC LKDGIMH+N +D+LFNKATG
Sbjct: 268 DDDDDELDDLEQGEDEPNTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNKATG 327
Query: 403 EFDF 406
EFDF
Sbjct: 328 EFDF 331
>gi|242062660|ref|XP_002452619.1| hypothetical protein SORBIDRAFT_04g029230 [Sorghum bicolor]
gi|241932450|gb|EES05595.1| hypothetical protein SORBIDRAFT_04g029230 [Sorghum bicolor]
Length = 229
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 132/234 (56%), Positives = 153/234 (65%), Gaps = 31/234 (13%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MA+S VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I IDRT
Sbjct: 1 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTK 60
Query: 58 APKQPAPG--GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 114
A A G G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 AAAPSAGGTTGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 115
Query: 115 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASDSGGNTEAKSGN---GRPSSYMPPPP 170
D YNIPTG SDY P+P SD + GRPS YMPPP
Sbjct: 116 --------------DTGMYNIPTGPSDYAPSPISDIRNGMAINGADPKAGRPSPYMPPPS 161
Query: 171 SPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQ 224
WM+ RP L VDVNVAYVEGR++ DRG QPLTQDF MS+GKRKR+++P Q
Sbjct: 162 P-WMSQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLMMSSGKRKRDEYPGQ 213
>gi|413948831|gb|AFW81480.1| hypothetical protein ZEAMMB73_123227 [Zea mays]
Length = 246
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/212 (56%), Positives = 136/212 (64%), Gaps = 32/212 (15%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTSAPKQPAPG 65
VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I IDRT A G
Sbjct: 53 VYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTKAAAASVGG 112
Query: 66 --GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGST 122
G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 113 TTGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT------------- 159
Query: 123 PLPGTADNSTYNIPTGSSDY-PTPASDSGGNTEAKSGN---GRPSSYM--PPPPSPWMNP 176
D + YNIPTG SDY P+P SD + G PS YM PPPSPWMN
Sbjct: 160 ------DTAMYNIPTGPSDYAPSPISDVRNGMAINGADPTAGHPSPYMFLQPPPSPWMNQ 213
Query: 177 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDF 208
R PL VDVNVAYVEGR++ DRG QPLTQ+
Sbjct: 214 R-PLGVDVNVAYVEGREDPDRGVQPQPLTQNI 244
>gi|168046540|ref|XP_001775731.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672883|gb|EDQ59414.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 400
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 159/437 (36%), Positives = 218/437 (49%), Gaps = 80/437 (18%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
MA S + VY+ V+EDVI+ VR +F + G +++LNELQ +WE+K++Q+G I + ++
Sbjct: 13 MAMSVSN-VYLHVVEDVINNVRTDFQSEGVDDNILNELQSLWELKLVQSGAIQEPSAHDA 71
Query: 61 QPA----PGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
PA P TPV DLN P EEYE P F P T + P+ PG
Sbjct: 72 NPAAKPIPQTVATPVLDLNGPV-AAEEYEAPPN--YFSQAPASTSSREPVVFQYMPPG-- 126
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 176
P S L +SG ++ GNG PSSYM P S WMN
Sbjct: 127 PREESLQL-----------------------NSGHQPASRIGNGAPSSYMQQPAS-WMNQ 162
Query: 177 RPPLSVDVNVAYVEGRDEADRGTSHQ--------PLTQDFFTMSAGKRKREDFPAQYHNG 228
+ V+VN+ D G + P+T+DF T+S GKRK ++ + G
Sbjct: 163 K-HRGVEVNMNETYEERAVDNGLAQGLNTAQGAPPITKDFLTISTGKRKHDEISS----G 217
Query: 229 GYNIPQQDGAGDA-MS----EIFELEVSEFP-GR----------QDSVTTANREIFANLA 272
Y IPQ+DGA D +S E E ++E GR +++ A +
Sbjct: 218 NYYIPQRDGAADVELSTLGPEALERWIAEKSVGRNEDLRLWSLYRENADAAIEHLIHAKF 277
Query: 273 SSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQND 332
S + QLDG + D YD YQGV EDY N P +D+ A +V ++
Sbjct: 278 SQKLSSSQLDG-VDDEYD---------GYQGVA-EDY---NEPEEDDLSAPEAKLVVNSE 323
Query: 333 AAEDDDDEP---LNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
E + EP ++++DD D +E T HLVLAQFDKVTR+K++WKC LKDGIMH
Sbjct: 324 PTESEGSEPPLCEDDDEDDVDDADHGDDEPATNHLVLAQFDKVTRSKNKWKCTLKDGIMH 383
Query: 390 INNKDILFNKATGEFDF 406
+NN+DILF KATGEF+F
Sbjct: 384 LNNRDILFVKATGEFEF 400
>gi|168022370|ref|XP_001763713.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685206|gb|EDQ71603.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 160/447 (35%), Positives = 216/447 (48%), Gaps = 90/447 (20%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSA-- 58
MA S + VY+ V+EDVI+ VR +F + G ++VLNELQ +WE+K++Q+G I D T+
Sbjct: 13 MAMSVSN-VYLHVVEDVINNVRIDFQSEGVDDNVLNELQSLWELKLVQSGAIQDPTAHDP 71
Query: 59 ----PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 114
+P P TPV DLN PY EEYETP + FP P T + P+
Sbjct: 72 LANPAAKPIPQTVATPVLDLNGPYVAAEEYETPPND--FPRVPASTSSREPVMFQY---- 125
Query: 115 STPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWM 174
+P PG ++ S P P + GNG PSSYM P S WM
Sbjct: 126 ---MP-----PGPSEESLQIDPGQQHLAP------------RIGNGTPSSYMQQPAS-WM 164
Query: 175 NPRPP-LSVDVNVAYVEGRDEAD------RGTSHQPLTQDFFTMSAGKRKREDFPAQYHN 227
N + + +++N Y E + D P+T+DF T+S GKRK ++ +
Sbjct: 165 NQKHRGVELNMNETYEEREGDTDTAQAPVAAPGAPPITKDFLTISTGKRKHDEISS---- 220
Query: 228 GGYNIPQQDGAGD-----AMSEIFELEVSEFPGRQDSVTTANRE---------------- 266
G Y IPQ+DGA D +M E E E E G + + R
Sbjct: 221 GQYYIPQRDGAVDDELSTSMGETCENEGREVLGNWQAERSVGRSEDLRLWLQYRRSADAA 280
Query: 267 ----IFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQA 322
I A L + QLDG I D YDD V EDYN +D+
Sbjct: 281 IEQLIHAKLLQGLSGVAQLDG-IDDEYDDA------------VAEDYN----EPEDDLPV 323
Query: 323 STPAVVTQNDAAEDDDDEP---LNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRW 379
+ + E + EP ++++DD D +E +T HLVLAQFDKVTR+K++W
Sbjct: 324 PEAKIAVNAEPTESEGSEPPLCEDDDEDDVDDADRGDDEPDTNHLVLAQFDKVTRSKNKW 383
Query: 380 KCALKDGIMHINNKDILFNKATGEFDF 406
KC LKDGIMH+NN+DILF KATGEF+F
Sbjct: 384 KCTLKDGIMHLNNRDILFVKATGEFEF 410
>gi|87241284|gb|ABD33142.1| Transcription factor IIA, beta-barrel [Medicago truncatula]
Length = 140
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/139 (68%), Positives = 107/139 (76%), Gaps = 2/139 (1%)
Query: 269 ANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVV 328
A+L + +IPQLDGPIP DDVLSTPNIYNY GV NEDYNI NTPAP ++ ASTPA+V
Sbjct: 3 ADLERLASRIPQLDGPIPYE-DDVLSTPNIYNYGGVFNEDYNIANTPAPPEVPASTPALV 61
Query: 329 TQNDAAEDDDDEPLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGI 387
QN+A +D+D+ DDD+ D E+ T HLVLAQFDKVTRTKSRWKC LKDGI
Sbjct: 62 AQNEAVNEDEDDEPLNEDDDDDLDDLDQEDDQDTNHLVLAQFDKVTRTKSRWKCTLKDGI 121
Query: 388 MHINNKDILFNKATGEFDF 406
MHIN KDILFNKATGEFDF
Sbjct: 122 MHINKKDILFNKATGEFDF 140
>gi|302824123|ref|XP_002993707.1| hypothetical protein SELMODRAFT_431754 [Selaginella moellendorffii]
gi|300138431|gb|EFJ05199.1| hypothetical protein SELMODRAFT_431754 [Selaginella moellendorffii]
Length = 217
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 102/277 (36%), Positives = 138/277 (49%), Gaps = 69/277 (24%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI----IDRT 56
MATS VY+ V+EDVI+ VR +F ESVLN+LQ +WE+KMIQ+G I I +
Sbjct: 1 MATSVAS-VYLHVMEDVINNVRADFQAENVEESVLNDLQSLWELKMIQSGTISPGEIPQN 59
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
+ A T V DLN+PY+ +EE+ TPTAE+LF P STP PG
Sbjct: 60 LGVRNAA--AQATSVQDLNIPYQASEEF-TPTAELLFSPY------------STPTPG-- 102
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 176
P TP+ +D GG ++ + G
Sbjct: 103 --PDQTPI----------------------ADKGGGDDSHNHRG---------------- 122
Query: 177 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 236
VDVNVAY EG+++ + G+ P+T+DFFT+++GKRKR+D PA Y G Y IPQ D
Sbjct: 123 -----VDVNVAYQEGQEDEENGSGQGPVTKDFFTLTSGKRKRDDLPANYFPGDY-IPQHD 176
Query: 237 GAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLAS 273
GA D E + + G D+ R +FA LA+
Sbjct: 177 GAADTPEETRRPSIPQHDGADDNYDDEVR-VFALLAN 212
>gi|302822167|ref|XP_002992743.1| hypothetical protein SELMODRAFT_430900 [Selaginella moellendorffii]
gi|300139484|gb|EFJ06224.1| hypothetical protein SELMODRAFT_430900 [Selaginella moellendorffii]
Length = 215
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 132/258 (51%), Gaps = 69/258 (26%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI----IDRT 56
MATS VY+ V+EDVI+ VR +F ESVLN+LQ +WE+KMIQ+G I I +
Sbjct: 1 MATSVAS-VYLHVMEDVINNVRADFQAENVEESVLNDLQSLWELKMIQSGTISPGEIPQN 59
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
+ A T V DLN+PY+G+EE+ TPTAE+LF P STP PG
Sbjct: 60 LGVRNAA--AQATSVQDLNIPYQGSEEF-TPTAELLFSPY------------STPTPG-- 102
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 176
P TP+ A SGG+ S N R
Sbjct: 103 --PDQTPI---------------------ADKSGGD---DSHNHR--------------- 121
Query: 177 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 236
VDVNVAY EG+++ + G+ P+T+DFFT+++GKRKR+D PA Y G Y IPQ D
Sbjct: 122 ----GVDVNVAYQEGQEDEENGSGQGPVTKDFFTLTSGKRKRDDLPANYFPGDY-IPQHD 176
Query: 237 GAGDAMSEIFELEVSEFP 254
GA D EI L+ + P
Sbjct: 177 GAADT-PEILVLQETRRP 193
>gi|19112462|ref|NP_595670.1| transcription factor TFIIA complex large subunit Toa1 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74625878|sp|Q9USU9.1|TOA1_SCHPO RecName: Full=Transcription initiation factor IIA large subunit;
Short=TFIIA large subunit
gi|6018693|emb|CAB57938.1| transcription factor TFIIA complex large subunit Toa1 (predicted)
[Schizosaccharomyces pombe]
Length = 369
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 114/421 (27%), Positives = 169/421 (40%), Gaps = 68/421 (16%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ S G VY VI DVI+ R +F NG ++ L ELQ +W+ K+ V D + P
Sbjct: 1 MSNSIVGEVYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKL----VATDVATFPW 56
Query: 61 QPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTP---IQTPLPGSTPLPGSTP 117
AP G P ++ P + L+T + P ++P+
Sbjct: 57 AQAPVGTF------------------PIGQLFDPVSGLRTDSLDVTAPAVANSPI----- 93
Query: 118 LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
L + T+ G+S+Y +P + S ++ + SS +P S N
Sbjct: 94 LNNIAAIRAVQQMDTFAQQHGNSNYYSPPTPSL--PQSATNISFDSSAIPNVQSNPNNTA 151
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTM---SAGKRKREDFPAQYHNGGYNIPQ 234
P S N + AD P+ D T S G+ D + GG +P
Sbjct: 152 PFPSYSSNSLQLPTNQTADS-----PIINDHSTANVTSTGQEHAPDSSSTNSFGGLLLPN 206
Query: 235 QDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLS 294
Q+ SE+ E E S + T AN S +PQ DG I D DD S
Sbjct: 207 QNSP--KKSELGETESS-------NTTPAN---------SRNDVPQTDGAIHD-LDDAGS 247
Query: 295 TPNIYNYQGVVNE--DYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDD 352
N + + + + D I N I + D + D P +E + +LDD
Sbjct: 248 PSNFESNRFAIAQKADAEIYEVLKKNRILQIDGTIEDNEDEKKPPVDTPSDEAINSDLDD 307
Query: 353 VDQGEELNT-------QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFD 405
D E T Q +VL +DKV K++WKC +DG++ +N KD LF KA GEF+
Sbjct: 308 PDSDEAPETEEGSDIGQAIVLCLYDKVNHHKNKWKCVFRDGVVGVNGKDYLFFKANGEFE 367
Query: 406 F 406
+
Sbjct: 368 W 368
>gi|393246685|gb|EJD54193.1| hypothetical protein AURDEDRAFT_109941 [Auricularia delicata
TFB-10046 SS5]
Length = 278
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 322 ASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKC 381
A P VV +++ D + L+++D E D VD E + +V +DKV R K++WKC
Sbjct: 196 APRPIVVGRSEQTNDTINSDLDDSDSGEEDGVD--AEGTVKDIVFCTYDKVARVKNKWKC 253
Query: 382 ALKDGIMHINNKDILFNKATGEFDF 406
LKDG++H+N KD LF+K TGEF++
Sbjct: 254 VLKDGVIHVNGKDYLFSKCTGEFEW 278
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 62/147 (42%), Gaps = 22/147 (14%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ Y VI+DVI V+ EF + G ESVL +L W+ K++ + V P
Sbjct: 1 MSNKIVPTTYRAVIDDVIQSVKAEFESFGVDESVLADLHNRWQHKVVSSHVADFEPIQPV 60
Query: 61 QPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG--------STPL 112
P P P T H L Y G + P + P PL T P PG PL
Sbjct: 61 LP-PAAPPTSTHPLPA-YNGVQIKHEPQDAVPGPQQPLYT--MAPAPGLYAFAPQLRGPL 116
Query: 113 -PGSTPLPGSTPLPGTADNSTYNIPTG 138
PG+ P PG TP Y IPTG
Sbjct: 117 PPGARPGPGVTP---------YMIPTG 134
>gi|390602132|gb|EIN11525.1| transcription factor IIA alpha/beta subunit [Punctularia
strigosozonata HHB-11173 SS5]
Length = 290
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 329 TQNDAAEDDDDEPLNEN-DDDELDDVDQGEE--LNTQHLVLAQFDKVTRTKSRWKCALKD 385
+Q+ + E++D E +N + DD + ++ D EE +V +DKV R K++WKC LKD
Sbjct: 210 SQSQSTEENDPEAINSDLDDSDTENEDDNEEGGQAVGDIVFCTYDKVARVKNKWKCVLKD 269
Query: 386 GIMHINNKDILFNKATGEFDF 406
G++H+NNKD LF K TGEF++
Sbjct: 270 GMIHVNNKDYLFAKCTGEFEW 290
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI-IDRTSAP 59
M+ +Y VI+DVI+ ++ EF G GE VL ELQ WE K+IQ+GV D A
Sbjct: 1 MSNKIVPTIYRAVIDDVIAAIKPEFDEYGVGEEVLAELQSKWETKVIQSGVADFDPAHAM 60
Query: 60 KQPAPGGPITPVH 72
+ PA P +H
Sbjct: 61 QAPAAHYPPHAMH 73
>gi|351725343|ref|NP_001237089.1| SP-2 [Glycine max]
gi|75911509|gb|ABA29611.1| SP-2 [Glycine max]
Length = 45
Score = 77.8 bits (190), Expect = 8e-12, Method: Composition-based stats.
Identities = 36/43 (83%), Positives = 40/43 (93%), Gaps = 1/43 (2%)
Query: 362 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 404
Q LVLAQFDKVTRTKSRWKC+LKD ++ IN+KDILFNKATGEF
Sbjct: 3 QRLVLAQFDKVTRTKSRWKCSLKDRVL-INDKDILFNKATGEF 44
>gi|409045253|gb|EKM54734.1| hypothetical protein PHACADRAFT_258769 [Phanerochaete carnosa
HHB-10118-sp]
Length = 159
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 53/82 (64%), Gaps = 8/82 (9%)
Query: 330 QNDAAEDDDDEPLNENDDD-----ELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALK 384
Q+ A ++DDDE +N + DD E DD G E + +V +DKV R K++WKC LK
Sbjct: 81 QSRADQEDDDEAINSDLDDSDSEGERDDPTGGAETD---IVFCTYDKVARVKNKWKCILK 137
Query: 385 DGIMHINNKDILFNKATGEFDF 406
DG++H+N KD LF K TGEF++
Sbjct: 138 DGMIHVNGKDYLFAKCTGEFEW 159
>gi|296417204|ref|XP_002838249.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634175|emb|CAZ82440.1| unnamed protein product [Tuber melanosporum]
Length = 373
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 112/437 (25%), Positives = 168/437 (38%), Gaps = 95/437 (21%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ G +Y R+I+DVI+ +F G S L EL+ +W+ K+
Sbjct: 1 MSNQVVGEIYQRIIDDVINNSIIDFEEAGVNASTLQELKQVWQSKLT------------- 47
Query: 61 QPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPG 120
DLNV FP P +Q GS P P S P
Sbjct: 48 ------------DLNV--------------ATFPWDPPSETVQAS--GSAPAPNS-PTKV 78
Query: 121 STPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPRPPL 180
+T G+ + P P + + G P PP P NP
Sbjct: 79 QNNNSQQQQQNTIKQEPGAQN-PNPQTVNVGVRIKPEPGMEPQGVYAPPAQPTGNP---- 133
Query: 181 SVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDF--------PAQYHNGGYN- 231
N A E R + Q L Q F R P Q NG +
Sbjct: 134 --THNPALAEAR-------ARQNLAQKFGNTPQLARPAGGLVLPGLATNPQQRPNGQQSG 184
Query: 232 IPQQDGAGD-----------AMSEIFELEVSEFPGRQDSVTTANREI---FANLASSSVK 277
IPQ DG G+ + SE ++ + + A E+ NL SS K
Sbjct: 185 IPQHDGGGEETIPIEGYGSISRSEADKILLRRISDAERESARATDELVKALMNLGHSS-K 243
Query: 278 IPQLDGP--IPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAE 335
+ G DPY++ L N Y + V ++ NTP+P PA + Q D E
Sbjct: 244 SSKAKGRRRAQDPYEEALDPFNHYPHAAPVPTVLDVSNTPSPR------PAPMGQVDG-E 296
Query: 336 DDDDEPLNENDDDELDDVDQGEELNTQ------HLVLAQFDKVTRTKSRWKCALKDGIMH 389
D+E ++E+ + D + +E++ + ++L +DKV RTK++WKC LKDG++
Sbjct: 297 SGDEEVVDEDAINSDLDDPEDDEIDGEDDDEVPQIMLCMYDKVQRTKNKWKCVLKDGVLT 356
Query: 390 INNKDILFNKATGEFDF 406
IN + +F+KA GE+++
Sbjct: 357 INQTEYVFHKANGEYEW 373
>gi|440795446|gb|ELR16566.1| transcription factor iia, alpha/beta subunit protein [Acanthamoeba
castellanii str. Neff]
Length = 255
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 51/72 (70%), Gaps = 5/72 (6%)
Query: 335 EDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 394
E+D DE L + DDE +GEE +T ++ L QF+KVTR K++ KC LK G+MH+N +D
Sbjct: 189 ENDGDEDLGSDLDDE-----EGEEPDTDNIALCQFEKVTRIKNKRKCNLKAGVMHLNGRD 243
Query: 395 ILFNKATGEFDF 406
LFN+A GEF++
Sbjct: 244 YLFNRANGEFEW 255
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 4 SATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
++T VY V+EDVI ++ EF++ G ESVL ELQ +WE K+ Q+
Sbjct: 2 TSTSSVYKYVMEDVIKNIKHEFLSEGIPESVLAELQQVWEAKLAQS 47
>gi|193676570|ref|XP_001950593.1| PREDICTED: TFIIA-alpha and beta-like factor-like [Acyrthosiphon
pisum]
Length = 407
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
QN A+ D EPLN DD + D+D GE T+++++ Q+DK+TR++++WK KDGIM
Sbjct: 336 QNSAS---DAEPLNSGDD--VSDIDNGELFETENVIVCQYDKITRSRNKWKLYFKDGIMS 390
Query: 390 INNKDILFNKATGEFDF 406
+N D +F KATG+ ++
Sbjct: 391 LNGYDYVFQKATGDAEW 407
>gi|15237841|ref|NP_200731.1| transcription factor-related protein [Arabidopsis thaliana]
gi|9759244|dbj|BAB09768.1| unnamed protein product [Arabidopsis thaliana]
gi|39545874|gb|AAR28000.1| TFIIA-L3 [Arabidopsis thaliana]
gi|332009777|gb|AED97160.1| transcription factor-related protein [Arabidopsis thaliana]
Length = 186
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 17/77 (22%)
Query: 347 DDELDDVDQGEE-----------------LNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
D+ + DVD+ EE +N QHLV+ QFDKV R+K++W+C G+M
Sbjct: 110 DEAIVDVDENEEPLNEDDDDEEDDIDDDDMNIQHLVMCQFDKVKRSKNKWECKFNAGVMQ 169
Query: 390 INNKDILFNKATGEFDF 406
IN K++LF++ATG+F+F
Sbjct: 170 INGKNVLFSQATGDFNF 186
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 61/137 (44%), Gaps = 37/137 (27%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGP-GESVLNELQGIWEMKMIQAGVIIDRTSAP 59
++TS T Y VI+DVI+K R + V NG ESVL+++Q +W+ KMIQAG
Sbjct: 3 LSTSDTSSSYNYVIDDVINKSRCDLVYNGELDESVLSQIQSMWKTKMIQAG--------- 53
Query: 60 KQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLP 119
A G I ET +A I P +QT +QT P + PLP
Sbjct: 54 ---AMSGTI----------------ETSSASIPTTPVIVQTTLQT--------PDAIPLP 86
Query: 120 GSTPLPGTADNSTYNIP 136
P + Y IP
Sbjct: 87 EKKMSPKKESDGFYYIP 103
>gi|303274258|ref|XP_003056451.1| transcription factor IIA, alpha/beta subunit [Micromonas pusilla
CCMP1545]
gi|226462535|gb|EEH59827.1| transcription factor IIA, alpha/beta subunit [Micromonas pusilla
CCMP1545]
Length = 158
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 10/84 (11%)
Query: 321 QASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWK 380
Q S+ AV ++D E L+ + D+ L D L + +LVLAQ+DKVTR K++WK
Sbjct: 83 QISSAAV----KGLKEDSAESLSSDSDEGLVD------LCSSNLVLAQYDKVTRAKNKWK 132
Query: 381 CALKDGIMHINNKDILFNKATGEF 404
C LK G+M ++ KD+LF KA+GEF
Sbjct: 133 CTLKKGVMTLDGKDVLFGKASGEF 156
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 5/53 (9%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQ 61
+Y++V+ +VI VR +F + ESVL L +WE K++Q+G +SAP++
Sbjct: 6 LYLQVMNNVIDGVRGDFSSEQLDESVLESLASLWERKLLQSG-----SSAPER 53
>gi|324513426|gb|ADY45517.1| TFIIA-alpha and beta-like factor [Ascaris suum]
Length = 412
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 332 DAAEDDDDEPLNEND-----DDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDG 386
D A DDDE + E D DD+ DD D ++V+ QF+KV R +S+WK LKDG
Sbjct: 333 DGATADDDEQVVEEDPLNSGDDQSDDEDVERLFEADNVVMCQFEKVHRARSKWKFTLKDG 392
Query: 387 IMHINNKDILFNKATGEFDF 406
IMHI KD F + +GE ++
Sbjct: 393 IMHIQGKDYCFQRCSGEAEW 412
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VI DVIS+V++ F++ VL +L+ WE K++ +G + + P P P +
Sbjct: 13 IYKGVINDVISQVKEAFLDENVDVDVLQQLKKEWEDKLMASGSVDLEGTKPVAPPPIRQM 72
Query: 69 TPVHDLNVP 77
P H + P
Sbjct: 73 KPAHVMAAP 81
>gi|290979346|ref|XP_002672395.1| predicted protein [Naegleria gruberi]
gi|284085971|gb|EFC39651.1| predicted protein [Naegleria gruberi]
Length = 486
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 361 TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
T +++LAQ++KVTR K+RWKC LK GIMH++ KD LFNK TG+F++
Sbjct: 441 TPNIILAQYEKVTRHKNRWKCTLKCGIMHLDGKDYLFNKLTGDFEW 486
>gi|391342868|ref|XP_003745737.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Metaseiulus occidentalis]
Length = 357
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 53/69 (76%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
D+EPLN NDD +++ + +E++ ++V+ Q+DK++R+++RWK LKDGIM+I +D +F
Sbjct: 291 DEEPLNSNDDVSDEELSEAQEID--NVVVCQYDKISRSRNRWKFHLKDGIMNIQGRDYVF 348
Query: 398 NKATGEFDF 406
K+TG+ ++
Sbjct: 349 QKSTGDAEW 357
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 36/148 (24%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M++ G +Y VI+DVI+ V+D F++ E VL EL+ +WE K+ + I P+
Sbjct: 1 MSSVTVGRIYKSVIDDVITGVKDAFLDENADEQVLMELKQLWEKKLADSKAI-----EPQ 55
Query: 61 QPAPGGPITPVH----DLNVP------YEGT---EEYETPTAEILFPPTPL--------- 98
+P P+ V+ D NVP G+ E+Y P ++ P+
Sbjct: 56 EPP--APLVKVNSNKADSNVPPGITIQRSGSTPNEQYNYPQVRVIQQSQPMVHYPGTAAS 113
Query: 99 -------QTPIQTPLPGSTPLPGSTPLP 119
TP+ +P T PG+ LP
Sbjct: 114 SIGGHSGNTPVALRVPAPTNQPGAITLP 141
>gi|426197147|gb|EKV47074.1| hypothetical protein AGABI2DRAFT_192339 [Agaricus bisporus var.
bisporus H97]
Length = 325
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 277 KIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAED 336
+IPQ+DGP D+ P Y + + + P P +Q S AV +A
Sbjct: 207 RIPQVDGPSESSGDEGSPEPTGYAPRT------SHPSLPQPGSVQPSQAAVAKDEEAINS 260
Query: 337 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 396
D D + D E + + +V +DKV R K++WKC LKDG++H+N KD L
Sbjct: 261 DLD-----DSDTENEAEAEEGGTGDTDIVFCTYDKVARVKNKWKCILKDGMIHVNGKDYL 315
Query: 397 FNKATGEFDF 406
F K TGEF++
Sbjct: 316 FAKCTGEFEW 325
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
+Y VI+DVI+ ++ EF G E VL ELQ WE K+I + V
Sbjct: 9 IYRTVIDDVIANIKSEFDEYGVSEEVLAELQSKWETKVIASHV 51
>gi|402224091|gb|EJU04154.1| hypothetical protein DACRYDRAFT_20780 [Dacryopinax sp. DJM-731 SS1]
Length = 234
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 34/42 (80%)
Query: 365 VLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
VL +DKV R K++WKC LKDGIMHIN KD LF+K TGEFD+
Sbjct: 193 VLCTYDKVQRVKNKWKCVLKDGIMHINGKDYLFSKCTGEFDW 234
>gi|255070895|ref|XP_002507529.1| transcription factor IIA, alpha/beta subunit [Micromonas sp.
RCC299]
gi|226522804|gb|ACO68787.1| transcription factor IIA, alpha/beta subunit [Micromonas sp.
RCC299]
Length = 157
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 46/68 (67%)
Query: 339 DEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFN 398
DE L+ + DD + D ++ +L+LAQF+KV R KS+WKC LK+G+M + N+DILF
Sbjct: 90 DEILSSDTDDAEEGSDYDDDSKCLNLILAQFEKVARAKSKWKCVLKEGVMTLENRDILFG 149
Query: 399 KATGEFDF 406
+ GEF +
Sbjct: 150 RGNGEFRW 157
>gi|384490672|gb|EIE81894.1| hypothetical protein RO3G_06599 [Rhizopus delemar RA 99-880]
Length = 363
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 39/45 (86%)
Query: 362 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+H++L +DKVTRTK++WKC LKDGIM +N +D LF++ATG+F++
Sbjct: 319 EHIILCLYDKVTRTKNKWKCVLKDGIMLVNGRDYLFHRATGDFEW 363
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + VY VI++VI++VR +F + G ESVL ELQ WE K+ ++ V
Sbjct: 1 MSNAIVANVYRYVIDEVINQVRGDFEDMGIDESVLQELQRSWESKVARSRV 51
>gi|384252956|gb|EIE26431.1| hypothetical protein COCSUDRAFT_64488 [Coccomyxa subellipsoidea
C-169]
Length = 258
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Query: 322 ASTPAVVTQNDAAED-DDDEPLNENDDDELDDVDQGEELNTQ--HLVLAQFDKVTRTKSR 378
A + Q D ++D + + + +D L DV +E + + ++V+AQF+KV+RTK+R
Sbjct: 171 AHQNGTIPQQDGSDDPQEHDKGKQEKEDNLSDVSSDDEKDEECDNVVIAQFEKVSRTKNR 230
Query: 379 WKCALKDGIMHINNKDILFNKATGEFDF 406
WKC LKDGI+ I+ +D LF++A+GE F
Sbjct: 231 WKCQLKDGIITIDGRDYLFHRASGEMQF 258
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 11/107 (10%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M S+ VY VI+DVI++V+ +FV G E+VL+EL+ +WE K+ Q+GV ++ +AP
Sbjct: 1 MQDSSVSTVYRNVIDDVIARVKADFVQEGVDEAVLDELRVLWEAKLQQSGV-LEPENAPT 59
Query: 61 QPAPGGP---ITPVHDLNVPYEGTEEYETP---TAEILFPPTPLQTP 101
G P +TP L P ++Y P TA + P PLQ P
Sbjct: 60 HALSGLPPQYLTP--GLQAPKIEQQQYGRPGFQTASVQQP--PLQAP 102
>gi|312090801|ref|XP_003146750.1| transcription factor IIA [Loa loa]
gi|307758086|gb|EFO17320.1| transcription factor IIA [Loa loa]
Length = 409
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 330 QNDAAEDDD----DEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKD 385
+ +A ED+D ++PLN DD + DD D ++LV+ QF+KV R +S+WK LKD
Sbjct: 330 EGNAVEDEDQVTEEDPLNSGDD-QSDDEDVERLFEAENLVMCQFEKVHRARSKWKFTLKD 388
Query: 386 GIMHINNKDILFNKATGEFDF 406
GIMHI KD F + +GE ++
Sbjct: 389 GIMHIRGKDHCFQRCSGEAEW 409
>gi|336371893|gb|EGO00233.1| hypothetical protein SERLA73DRAFT_122281 [Serpula lacrymans var.
lacrymans S7.3]
Length = 300
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 316 APNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEE---LNTQHLVLAQFDKV 372
AP S P + + + DD E +N + DD + ++ + + +V +DKV
Sbjct: 207 APRASHPSLPQPPQSSKSTQPDDSEAINSDLDDSDTEGEEEADEAGVGESDIVFCTYDKV 266
Query: 373 TRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
R K++WKC LKDG++HIN KD LF K TGEF++
Sbjct: 267 ARVKNKWKCILKDGMIHINGKDYLFAKCTGEFEW 300
>gi|392569631|gb|EIW62804.1| transcription factor IIA alpha/beta subunit [Trametes versicolor
FP-101664 SS1]
Length = 291
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 4/82 (4%)
Query: 329 TQNDAAED-DDDEPLNENDDDELDDVDQ-GEELNT--QHLVLAQFDKVTRTKSRWKCALK 384
+Q AAE +D E +N + DD DV+Q G E + Q +V +DKV R K++WKC LK
Sbjct: 210 SQTSAAEKAEDSEAINSDLDDSDSDVEQDGIEGGSADQDIVFCTYDKVARVKNKWKCVLK 269
Query: 385 DGIMHINNKDILFNKATGEFDF 406
DG++HIN KD LF K +GEF++
Sbjct: 270 DGMIHINGKDYLFAKCSGEFEW 291
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ +Y VI+DVIS ++ EF G E VL ELQ WE K+I + V
Sbjct: 1 MSNKIVPSIYRAVIDDVISNIKSEFDEYGVSEDVLAELQSKWEAKVIASHV 51
>gi|340924286|gb|EGS19189.1| transcription factor TFIIA-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 392
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 9/71 (12%)
Query: 336 DDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDI 395
DD +E L E+ DD DD T H++L +DKV R K++WKC LKDG++ +N K+
Sbjct: 331 DDPNEGLGEDSDD--DDC-------TGHMMLCMYDKVQRVKNKWKCILKDGVLTVNGKEY 381
Query: 396 LFNKATGEFDF 406
+F+KATGE+++
Sbjct: 382 VFHKATGEYEW 392
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + G +Y +I+DVI+ VR +F NG E+VL L+ W+ K+ Q V
Sbjct: 1 MSNTQVGPIYDSIIQDVINAVRVDFEENGIDETVLETLKKTWQHKLSQLNV 51
>gi|321468455|gb|EFX79440.1| hypothetical protein DAPPUDRAFT_304824 [Daphnia pulex]
Length = 335
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 335 EDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 394
E+ D+EPLN DD + D D T ++V+ Q+DK+TR+++RWK LKDGIM+IN +D
Sbjct: 266 ENADEEPLNSEDD--VTDDDPSVLFETDNVVVCQYDKITRSRNRWKFHLKDGIMNINGRD 323
Query: 395 ILFNKATGEFDF 406
+F KA G+ ++
Sbjct: 324 YVFQKANGDAEW 335
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID 54
+Y VIEDVI+ VR+ F++ G E+VL EL+ WE K+ Q+ ID
Sbjct: 11 LYRGVIEDVINGVREAFLDEGIDEAVLLELKQNWENKL-QSSKAID 55
>gi|432945413|ref|XP_004083586.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Oryzias latipes]
Length = 251
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 66/104 (63%), Gaps = 7/104 (6%)
Query: 303 GVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQ 362
GV+ + IV P N +Q +T + AA ++EPLN DD + D + E +T+
Sbjct: 155 GVIIQPQQIVLAPG-NKVQGTTQVM----QAAAMVEEEPLNSGDD--VSDDENQELFDTE 207
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++V+ Q+DK+ R+K++WK LKDGIM++N +D +F+K+ G+ ++
Sbjct: 208 NVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVFSKSIGDAEW 251
>gi|170571342|ref|XP_001891692.1| Transcription factor IIA, alpha/beta subunit family protein [Brugia
malayi]
gi|158603666|gb|EDP39506.1| Transcription factor IIA, alpha/beta subunit family protein [Brugia
malayi]
Length = 388
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 328 VTQNDAAEDDDDE-----PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCA 382
+++ A DD+D+ PLN DD DD D ++LV+ QF+KV R +S+WK
Sbjct: 306 ISEEGNAVDDEDQVTEEDPLNSGDDQS-DDEDVERLFEAENLVMCQFEKVHRARSKWKFT 364
Query: 383 LKDGIMHINNKDILFNKATGEFDF 406
LKDGIMHI KD F + +GE ++
Sbjct: 365 LKDGIMHIRGKDHCFQRCSGEAEW 388
>gi|328773215|gb|EGF83252.1| hypothetical protein BATDEDRAFT_84804 [Batrachochytrium
dendrobatidis JAM81]
Length = 275
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
HLVL QF+KV R K++WKC LKDG++++N KD LFNKA +F++
Sbjct: 232 HLVLCQFEKVQRVKNKWKCVLKDGVVNVNGKDYLFNKANCDFEW 275
>gi|169616702|ref|XP_001801766.1| hypothetical protein SNOG_11526 [Phaeosphaeria nodorum SN15]
gi|160703243|gb|EAT81234.2| hypothetical protein SNOG_11526 [Phaeosphaeria nodorum SN15]
Length = 461
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Query: 331 NDAAEDDDDEPLNENDDDELDDVDQGEELNTQHL--VLAQFDKVTRTKSRWKCALKDGIM 388
+D E+D D+ +N + DD D+++ G+ + + + +L +DKV R K++WKC LKDGI+
Sbjct: 384 DDVKEEDPDDAINSDLDDPEDELNDGDNSDDEMVDYMLCTYDKVQRVKNKWKCTLKDGIL 443
Query: 389 HINNKDILFNKATGEFDF 406
N K+ LF+KA GEF++
Sbjct: 444 TTNKKEYLFHKANGEFEW 461
>gi|256016553|emb|CAR63572.1| putative Prion-like-(q/n-rich)-domain-bearing protein protein 51
[Angiostrongylus cantonensis]
Length = 376
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + DD D + ++++ QF+KV R +S+WK LKDGIMHI+NKD F
Sbjct: 309 EEDPLNSGDD-QSDDEDLETLFDADNVIMCQFEKVHRARSKWKFQLKDGIMHIDNKDYCF 367
Query: 398 NKATGEFDF 406
K +GE ++
Sbjct: 368 QKCSGEAEW 376
>gi|111598505|gb|AAH79909.1| Gtf2a1 protein [Mus musculus]
Length = 378
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 57/77 (74%), Gaps = 6/77 (7%)
Query: 333 AAEDD--DDEPLNENDDDELDDVDQGEEL-NTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
AED ++EPLN DD V++G+EL +T+++V+ Q+DK+ R+K++WK LKDGIM+
Sbjct: 305 GAEDGQVEEEPLNSEDDV---SVEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMN 361
Query: 390 INNKDILFNKATGEFDF 406
+N +D +F+KA G+ ++
Sbjct: 362 LNGRDYIFSKAIGDAEW 378
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|405970121|gb|EKC35053.1| Transcription initiation factor IIA subunit 1 [Crassostrea gigas]
Length = 251
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 5/86 (5%)
Query: 321 QASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWK 380
QAS P ++ Q + EPLN DD++ D D + +T ++V+ Q+DK+ R K++WK
Sbjct: 171 QASIPTMIQQPQGQQQ---EPLNS--DDDVSDEDPSDLFDTDNVVVCQYDKINRNKNKWK 225
Query: 381 CALKDGIMHINNKDILFNKATGEFDF 406
LKDGIM++N KD +F KATG+ ++
Sbjct: 226 FHLKDGIMNLNGKDFVFQKATGDAEW 251
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y V+EDVIS VR+ F++ G E VL EL+ +WE K+ Q+ +
Sbjct: 10 LYKTVVEDVISNVREAFLDEGVDEQVLQELKQLWENKLTQSRAL 53
>gi|348573205|ref|XP_003472382.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Cavia porcellus]
Length = 561
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 489 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 546
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 547 GRDYIFSKAIGDAEW 561
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 198 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWESKLMQSRAV 241
>gi|443709728|gb|ELU04277.1| hypothetical protein CAPTEDRAFT_105674 [Capitella teleta]
Length = 72
Score = 68.9 bits (167), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 46/60 (76%)
Query: 347 DDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
DD++ + D G +T+++V+ QFDK+ R+K+RWK LKDGIM++N +D +F KATG+ ++
Sbjct: 13 DDDVSEEDAGAASDTENVVVCQFDKIHRSKNRWKFHLKDGIMNLNGRDYVFQKATGDAEW 72
>gi|444708846|gb|ELW49885.1| Transcription initiation factor IIA subunit 1 [Tupaia chinensis]
Length = 407
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 333 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 334 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 391
Query: 391 NNKDILFNKATGEFDF 406
N +D +F+KA G+ ++
Sbjct: 392 NGRDYIFSKAIGDAEW 407
>gi|412990391|emb|CCO19709.1| transcription factor IIa large subunit 3 [Bathycoccus prasinos]
Length = 71
Score = 68.6 bits (166), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/45 (62%), Positives = 38/45 (84%)
Query: 360 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 404
+ +L+LAQF+KVTR+KS+WKC LK+G+M+IN D F+KATGEF
Sbjct: 25 DISNLILAQFEKVTRSKSKWKCVLKEGMMNINGNDYTFSKATGEF 69
>gi|358391042|gb|EHK40447.1| hypothetical protein TRIATDRAFT_296407 [Trichoderma atroviride IMI
206040]
Length = 372
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 36/44 (81%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC LKDG++ +N K+ +FNKATGE+++
Sbjct: 329 HIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFNKATGEYEW 372
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 28/132 (21%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ A G VY +IE+VI+ R +F +G E+VL EL+ W+ K+ Q +D P
Sbjct: 1 MSNQAVGGVYQTIIEEVINSSRVDFEESGVEEAVLEELRLGWQQKLSQ----LDVARFPW 56
Query: 61 QPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPG 120
P P E PTA + PP TP+ T +TPL LP
Sbjct: 57 DPKP------------------EPAPPTASV--PPPNAATPVHTQAQFATPL----SLPT 92
Query: 121 STPLPGTADNST 132
++P G N
Sbjct: 93 ASPPSGMLQNGV 104
>gi|332223451|ref|XP_003260884.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 2
[Nomascus leucogenys]
Length = 337
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 265 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 322
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 323 GRDYIFSKAIGDAEW 337
>gi|42476101|ref|NP_963889.1| transcription initiation factor IIA subunit 1 isoform 2 [Homo
sapiens]
gi|397475004|ref|XP_003808945.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 2
[Pan paniscus]
gi|402876876|ref|XP_003902178.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 2
[Papio anubis]
gi|426377669|ref|XP_004055583.1| PREDICTED: transcription initiation factor IIA subunit 1 [Gorilla
gorilla gorilla]
gi|433501|emb|CAA53152.1| TFIIA [Homo sapiens]
gi|727195|dbj|BAA03603.1| TFIIA-37 [Homo sapiens]
gi|119601741|gb|EAW81335.1| general transcription factor IIA, 1, 19/37kDa, isoform CRA_b [Homo
sapiens]
Length = 337
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 265 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 322
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 323 GRDYIFSKAIGDAEW 337
>gi|195449174|ref|XP_002071958.1| GK22574 [Drosophila willistoni]
gi|194168043|gb|EDW82944.1| GK22574 [Drosophila willistoni]
Length = 379
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D D E T+++++ Q+DK+TR++++WK LKDGIM++ KD +F
Sbjct: 313 EEEPLNSEDD--VTDEDSAEMFETENVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVF 370
Query: 398 NKATGEFDF 406
K+ G+ ++
Sbjct: 371 QKSNGDAEW 379
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVIS VRD F++ G E VL E++ IW K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVISNVRDAFLDEGVDEQVLQEMKQIWRNKLMASKAV 54
>gi|194038207|ref|XP_001924425.1| PREDICTED: transcription initiation factor IIA subunit 1 [Sus
scrofa]
Length = 341
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 269 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 326
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 327 GRDYIFSKAIGDAEW 341
>gi|47938836|gb|AAH71528.1| General transcription factor IIA, 1 [Danio rerio]
Length = 369
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 303 EEEPLNSGDD--VSDEEDQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVF 360
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 361 SKAIGDAEW 369
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA+SA +Y V+EDVI++VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 1 MASSANSSQVPKLYRSVMEDVIAEVRELFLDEGVDEQVLMELKTLWESKLMQSKAV 56
>gi|392591717|gb|EIW81044.1| transcription factor IIA alpha beta subunit [Coniophora puteana
RWD-64-598 SS2]
Length = 300
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+V +DKV R K++WKC LKDG++H+N KD LF K TGEF++
Sbjct: 258 IVFCTYDKVARVKNKWKCTLKDGMIHVNGKDYLFAKCTGEFEW 300
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
+Y VI++VI ++ EF G E VL ELQ WE K+I + V
Sbjct: 10 IYRTVIDEVIMAIKPEFDEYGVSEDVLAELQRKWENKVIASHV 52
>gi|358387730|gb|EHK25324.1| hypothetical protein TRIVIDRAFT_81972 [Trichoderma virens Gv29-8]
Length = 343
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 36/44 (81%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC LKDG++ +N K+ +FNKATGE+++
Sbjct: 300 HIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFNKATGEYEW 343
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQ 48
M+ A G VY +IE+VI+ R +F +G E+VL EL+ W+ K+ Q
Sbjct: 1 MSNQAVGNVYQTIIEEVINSSRVDFEESGVEEAVLEELRLGWQQKLSQ 48
>gi|329112489|ref|NP_001178146.2| transcription initiation factor IIA subunit 1 [Bos taurus]
Length = 337
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 265 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 322
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 323 GRDYIFSKAIGDAEW 337
>gi|296215644|ref|XP_002754213.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 2
[Callithrix jacchus]
Length = 337
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 265 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 322
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 323 GRDYIFSKAIGDAEW 337
>gi|403264809|ref|XP_003924664.1| PREDICTED: transcription initiation factor IIA subunit 1 [Saimiri
boliviensis boliviensis]
Length = 337
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 333 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 264 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 321
Query: 391 NNKDILFNKATGEFDF 406
N +D +F+KA G+ ++
Sbjct: 322 NGRDYIFSKAIGDAEW 337
>gi|48735070|gb|AAH72315.1| TFIIAa/b-2 protein, partial [Xenopus laevis]
Length = 366
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 300 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVF 357
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 358 SKAIGDAEW 366
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 12 LYRSVIEDVINDVRELFLDEGVDEQVLMELKTLWESKLMQSKAV 55
>gi|114654239|ref|XP_522920.2| PREDICTED: transcription initiation factor IIA subunit 1 isoform 3
[Pan troglodytes]
Length = 337
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 333 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 264 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 321
Query: 391 NNKDILFNKATGEFDF 406
N +D +F+KA G+ ++
Sbjct: 322 NGRDYIFSKAIGDAEW 337
>gi|340516937|gb|EGR47183.1| transcription factor IIA alpha/beta subunit [Trichoderma reesei
QM6a]
Length = 354
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 36/44 (81%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC LKDG++ +N K+ +FNKATGE+++
Sbjct: 311 HIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFNKATGEYEW 354
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQ 48
M+ SA G VY +IE+VI+ R +F +G E+VL EL+ W+ K+ Q
Sbjct: 1 MSNSAVGNVYQTIIEEVINSSRVDFEESGVEEAVLEELRLGWQQKLSQ 48
>gi|47086725|ref|NP_997822.1| transcription initiation factor IIA subunit 1 [Danio rerio]
gi|29124431|gb|AAH48894.1| General transcription factor IIA, 1 [Danio rerio]
gi|182891266|gb|AAI64197.1| Gtf2a1 protein [Danio rerio]
Length = 369
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 303 EEEPLNSGDD--VSDEEDQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVF 360
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 361 SKAIGDAEW 369
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA+SA +Y V+EDVI++VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 1 MASSANSNQVPKLYRSVMEDVIAEVRELFLDEGVDEQVLMELKTLWESKLMQSKAV 56
>gi|449663500|ref|XP_002168678.2| PREDICTED: uncharacterized protein LOC100203095 [Hydra
magnipapillata]
Length = 317
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D D + +T+++V+ Q+DK+ RT++RWK LKDGIM++ NKD +F+KA
Sbjct: 254 PLNSEDD--VSDEDPTDLFDTENVVVCQYDKIARTRNRWKFHLKDGIMNLRNKDFVFHKA 311
Query: 401 TGEFDF 406
G+ ++
Sbjct: 312 NGDSEW 317
>gi|57870633|gb|AAH89088.1| Unknown (protein for MGC:85109) [Xenopus laevis]
Length = 369
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 303 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVF 360
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 361 SKAIGDAEW 369
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA SA +Y VIEDVI+ VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 1 MAASANANPVPKLYRSVIEDVINDVREIFLDEGVDEQVLMELKTLWESKLMQSKAV 56
>gi|62858149|ref|NP_001016908.1| general transcription factor IIA, 1, 19/37kDa [Xenopus (Silurana)
tropicalis]
gi|89271946|emb|CAJ83726.1| general transcription factor IIA, 1 [Xenopus (Silurana) tropicalis]
Length = 367
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 301 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVF 358
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 359 SKAIGDAEW 367
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA SA +Y VIEDVI+ VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 1 MAASANANPVPKLYRSVIEDVINDVRELFLDEGVDEQVLMELKTLWESKLMQSKAV 56
>gi|354477640|ref|XP_003501027.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Cricetulus griseus]
Length = 339
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 333 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 266 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 323
Query: 391 NNKDILFNKATGEFDF 406
N +D +F+KA G+ ++
Sbjct: 324 NGRDYIFSKAIGDAEW 339
>gi|148229644|ref|NP_001083954.1| general transcription factor IIA, 1, 19/37kDa [Xenopus laevis]
gi|34099896|gb|AAP44969.1| transcription factor IIA large subunit-2 [Xenopus laevis]
gi|72679630|gb|AAI00226.1| TFIIAa/b-2 protein [Xenopus laevis]
Length = 367
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 301 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVF 358
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 359 SKAIGDAEW 367
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA SA +Y VIEDVI+ VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 1 MAASANANPVPKLYRSVIEDVINDVRELFLDEGVDEQVLMELKTLWESKLMQSKAV 56
>gi|402585624|gb|EJW79563.1| hypothetical protein WUBG_09527, partial [Wuchereria bancrofti]
Length = 70
Score = 68.2 bits (165), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD DD D ++LV+ QF+KV R +S+WK LKDGIMHI KD F
Sbjct: 3 EEDPLNSGDDQS-DDEDVERLFEAENLVMCQFEKVHRARSKWKFTLKDGIMHIRGKDHCF 61
Query: 398 NKATGEFDF 406
+ +GE ++
Sbjct: 62 QRCSGEAEW 70
>gi|213626277|gb|AAI70366.1| Unknown (protein for MGC:197093) [Xenopus laevis]
Length = 367
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 301 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVF 358
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 359 SKAIGDAEW 367
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA SA +Y VIEDVI+ VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 1 MAASANANPVPKLYRSVIEDVINDVREIFLDEGVDEQVLMELKTLWESKLMQSKAV 56
>gi|47222678|emb|CAG00112.1| unnamed protein product [Tetraodon nigroviridis]
Length = 410
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N KD +F
Sbjct: 344 EEEPLNSGDD--VSDEEDQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGKDYVF 401
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 402 SKAIGDAEW 410
>gi|148236361|ref|NP_001082753.1| general transcription factor IIA, 1, 19/37kDa [Xenopus laevis]
gi|34099900|gb|AAP44971.1| transcription factor IIA large subunit-1 [Xenopus laevis]
Length = 370
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 304 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVF 361
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 362 SKAIGDAEW 370
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VI DVI+ VR+ F++ G GE VL EL+ +WE K++Q+ +
Sbjct: 15 LYRSVIGDVINDVREIFLDEGVGEQVLMELKTLWESKLMQSKAV 58
>gi|33312518|gb|AAQ04072.1|AF424777_1 transcription factor IIA large subunit [Xenopus laevis]
Length = 370
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 304 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVF 361
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 362 SKAIGDAEW 370
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VI DVI+ VR+ F++ G GE VL EL+ +WE K++Q+ +
Sbjct: 15 LYRSVIGDVINDVREIFLDEGVGEQVLMELKTLWESKLMQSKAV 58
>gi|238599344|ref|XP_002394855.1| hypothetical protein MPER_05192 [Moniliophthora perniciosa FA553]
gi|215464561|gb|EEB95785.1| hypothetical protein MPER_05192 [Moniliophthora perniciosa FA553]
Length = 156
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+V +DKV R K++WKC LKDG++H+N KD LF+K TGEF++
Sbjct: 114 IVFCTYDKVARVKNKWKCILKDGMIHVNGKDYLFSKCTGEFEW 156
>gi|338719816|ref|XP_001492421.2| PREDICTED: transcription initiation factor IIA subunit 1 [Equus
caballus]
Length = 377
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 311 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIF 368
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 369 SKAIGDAEW 377
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 14 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 57
>gi|154303305|ref|XP_001552060.1| hypothetical protein BC1G_09401 [Botryotinia fuckeliana B05.10]
Length = 455
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 37/44 (84%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC +KDG++ +NNK+ +F+KATGE+++
Sbjct: 412 HIMLCMYDKVQRVKNKWKCVMKDGVLTVNNKEYVFHKATGEYEW 455
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVII 53
M+ + G VY ++I DV+ R +F +G E VL EL+ W+ K+ GV +
Sbjct: 1 MSNTQVGNVYQQIIADVVDSSRVDFEESGVDEVVLEELRKGWQTKLSTLGVAL 53
>gi|347841660|emb|CCD56232.1| hypothetical protein [Botryotinia fuckeliana]
Length = 456
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 37/44 (84%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC +KDG++ +NNK+ +F+KATGE+++
Sbjct: 413 HIMLCMYDKVQRVKNKWKCVMKDGVLTVNNKEYVFHKATGEYEW 456
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVII 53
M+ + G VY ++I DV+ R +F +G E VL EL+ W+ K+ GV +
Sbjct: 1 MSNTQVGNVYQQIIADVVDSSRVDFEESGVDEVVLEELRKGWQTKLSTLGVAL 53
>gi|7706735|ref|NP_056943.1| transcription initiation factor IIA subunit 1 isoform 1 [Homo
sapiens]
gi|383872924|ref|NP_001244639.1| transcription initiation factor IIA subunit 1 [Macaca mulatta]
gi|397475002|ref|XP_003808944.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 1
[Pan paniscus]
gi|402876874|ref|XP_003902177.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 1
[Papio anubis]
gi|1711663|sp|P52655.1|TF2AA_HUMAN RecName: Full=Transcription initiation factor IIA subunit 1;
AltName: Full=General transcription factor IIA subunit
1; AltName: Full=TFIIAL; AltName: Full=Transcription
initiation factor TFIIA 42 kDa subunit; Short=TFIIA-42;
Contains: RecName: Full=Transcription initiation factor
IIA alpha chain; AltName: Full=TFIIA p35 subunit;
Contains: RecName: Full=Transcription initiation factor
IIA beta chain; AltName: Full=TFIIA p19 subunit
gi|6721137|gb|AAF26776.1|AC010582_2 TFIIA-42 [Homo sapiens]
gi|433500|emb|CAA53151.1| TFIIA [Homo sapiens]
gi|452272|emb|CAA54442.1| TFIIA/alpha, p55 [Homo sapiens]
gi|727197|dbj|BAA03604.1| 'TFIIA-42' [Homo sapiens]
gi|76825402|gb|AAI07157.1| General transcription factor IIA, 1, 19/37kDa [Homo sapiens]
gi|76828070|gb|AAI07156.1| General transcription factor IIA, 1, 19/37kDa [Homo sapiens]
gi|119601740|gb|EAW81334.1| general transcription factor IIA, 1, 19/37kDa, isoform CRA_a [Homo
sapiens]
gi|167773425|gb|ABZ92147.1| general transcription factor IIA, 1, 19/37kDa [synthetic construct]
gi|167773975|gb|ABZ92422.1| general transcription factor IIA, 1, 19/37kDa [synthetic construct]
gi|261858774|dbj|BAI45909.1| general transcription factor IIA, 1, 19/37kDa [synthetic construct]
gi|380784291|gb|AFE64021.1| transcription initiation factor IIA subunit 1 isoform 1 [Macaca
mulatta]
gi|383408289|gb|AFH27358.1| transcription initiation factor IIA subunit 1 isoform 1 [Macaca
mulatta]
gi|384943596|gb|AFI35403.1| transcription initiation factor IIA subunit 1 isoform 1 [Macaca
mulatta]
Length = 376
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 304 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 361
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 362 GRDYIFSKAIGDAEW 376
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|332223449|ref|XP_003260883.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 1
[Nomascus leucogenys]
Length = 376
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 304 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 361
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 362 GRDYIFSKAIGDAEW 376
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|297796855|ref|XP_002866312.1| hypothetical protein ARALYDRAFT_496033 [Arabidopsis lyrata subsp.
lyrata]
gi|297312147|gb|EFH42571.1| hypothetical protein ARALYDRAFT_496033 [Arabidopsis lyrata subsp.
lyrata]
Length = 184
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 36/47 (76%)
Query: 360 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
N HLV+ QFDKV R K++W+C G+M IN K++LF++ATG+F+F
Sbjct: 138 NIPHLVMCQFDKVKRCKNKWECKFNAGVMQINGKNVLFSQATGDFNF 184
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGP-GESVLNELQGIWEMKMIQAGVIID--RTS 57
++TS T Y VI+DVI+K R E V NG ESVL+++Q +W+ KMIQAGVI TS
Sbjct: 3 LSTSDTSTSYNYVIDDVINKSRCELVYNGELEESVLSQIQSVWKTKMIQAGVITGTIETS 62
Query: 58 APKQPAP 64
A AP
Sbjct: 63 AVAISAP 69
>gi|431839183|gb|ELK01110.1| Transcription initiation factor IIA subunit 1 [Pteropus alecto]
Length = 373
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 333 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 300 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 357
Query: 391 NNKDILFNKATGEFDF 406
N +D +F+KA G+ ++
Sbjct: 358 NGRDYIFSKAIGDAEW 373
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 11 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 54
>gi|345804050|ref|XP_854907.2| PREDICTED: transcription initiation factor IIA subunit 1 [Canis
lupus familiaris]
Length = 646
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 574 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 631
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 632 GRDYIFSKAIGDAEW 646
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 283 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 326
>gi|30141908|ref|NP_780544.1| transcription initiation factor IIA subunit 1 isoform 2 [Mus
musculus]
gi|26339518|dbj|BAC33430.1| unnamed protein product [Mus musculus]
gi|109734484|gb|AAI17830.1| General transcription factor II A, 1 [Mus musculus]
gi|109734880|gb|AAI17831.1| General transcription factor II A, 1 [Mus musculus]
Length = 339
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 333 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 266 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 323
Query: 391 NNKDILFNKATGEFDF 406
N +D +F+KA G+ ++
Sbjct: 324 NGRDYIFSKAIGDAEW 339
>gi|409080246|gb|EKM80606.1| hypothetical protein AGABI1DRAFT_83593, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 325
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 11/130 (8%)
Query: 277 KIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAED 336
++PQ+DGP D+ P Y + + + P P +Q S AV +A
Sbjct: 207 RMPQVDGPSESSGDEGSPEPTGYAPRT------SHPSLPQPGSVQPSQAAVAKDEEAINS 260
Query: 337 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 396
D D+ D E + + +V +DKV R K++WKC LKDG++H+N KD L
Sbjct: 261 DLDD-----SDTENEAEAEEGGTGDTDIVFCTYDKVARVKNKWKCILKDGMIHVNGKDYL 315
Query: 397 FNKATGEFDF 406
F K TG F
Sbjct: 316 FAKCTGSVAF 325
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
+Y VI+DVI+ ++ EF G E VL ELQ WE K+I + V
Sbjct: 9 IYRTVIDDVIANIKSEFDEYGVSEEVLAELQSKWETKVIASHV 51
>gi|197098738|ref|NP_001125209.1| transcription initiation factor IIA subunit 1 [Pongo abelii]
gi|67462024|sp|Q5RCU0.1|TF2AA_PONAB RecName: Full=Transcription initiation factor IIA subunit 1;
AltName: Full=General transcription factor IIA subunit
1; Contains: RecName: Full=Transcription initiation
factor IIA alpha chain; AltName: Full=TFIIA p35 subunit;
Contains: RecName: Full=Transcription initiation factor
IIA beta chain; AltName: Full=TFIIA p19 subunit
gi|55727322|emb|CAH90417.1| hypothetical protein [Pongo abelii]
Length = 376
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 304 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 361
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 362 GRDYIFSKAIGDAEW 376
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|344273615|ref|XP_003408616.1| PREDICTED: transcription initiation factor IIA subunit 1 [Loxodonta
africana]
Length = 370
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 298 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 355
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 356 GRDYIFSKAIGDAEW 370
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 7 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 50
>gi|326920889|ref|XP_003206699.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Meleagris gallopavo]
Length = 439
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 373 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 430
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 431 SKAIGDAEW 439
>gi|451846311|gb|EMD59621.1| hypothetical protein COCSADRAFT_40793 [Cochliobolus sativus ND90Pr]
Length = 372
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 335 EDDDDEPLNENDDDELDDVDQGEELNTQHL--VLAQFDKVTRTKSRWKCALKDGIMHINN 392
E+D D+ +N + DD D+++ G+ + + +L +DKV R K++WKC LKDGI+ N
Sbjct: 299 EEDPDDAINSDLDDSEDELNDGDNSDDDMVDYMLCTYDKVQRVKNKWKCTLKDGILTTNK 358
Query: 393 KDILFNKATGEFDF 406
K+ LF+KA GEF++
Sbjct: 359 KEYLFHKANGEFEW 372
>gi|357613600|gb|EHJ68608.1| tfiia large subunit [Danaus plexippus]
Length = 274
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + G+ +T ++V+ Q+DK+TR++++WK LKDGIM+++ KD +F
Sbjct: 208 EEEPLNSGDD--VSDEEPGDMFDTDNVVVCQYDKITRSRNKWKFHLKDGIMNLSGKDYVF 265
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 266 QKANGDAEW 274
>gi|395827875|ref|XP_003787117.1| PREDICTED: transcription initiation factor IIA subunit 1 [Otolemur
garnettii]
Length = 465
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 393 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 450
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 451 GRDYIFSKAIGDAEW 465
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 101 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 144
>gi|451994420|gb|EMD86890.1| hypothetical protein COCHEDRAFT_1217905 [Cochliobolus
heterostrophus C5]
Length = 376
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 335 EDDDDEPLNENDDDELDDVDQGEELNTQHL--VLAQFDKVTRTKSRWKCALKDGIMHINN 392
E+D D+ +N + DD D+++ G+ + + +L +DKV R K++WKC LKDGI+ N
Sbjct: 303 EEDPDDAINSDLDDSEDELNDGDNSDDDMVDYMLCTYDKVQRVKNKWKCTLKDGILTTNK 362
Query: 393 KDILFNKATGEFDF 406
K+ LF+KA GEF++
Sbjct: 363 KEYLFHKANGEFEW 376
>gi|299752116|ref|XP_001830709.2| hypothetical protein CC1G_03246 [Coprinopsis cinerea okayama7#130]
gi|298409685|gb|EAU91078.2| hypothetical protein CC1G_03246 [Coprinopsis cinerea okayama7#130]
Length = 305
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 34/43 (79%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+V +DKV R K++WKC LK+G++H+N KD LF+K TGEF++
Sbjct: 263 IVFCTYDKVARVKTKWKCVLKEGMIHVNGKDYLFSKCTGEFEW 305
>gi|355693485|gb|EHH28088.1| hypothetical protein EGK_18434, partial [Macaca mulatta]
gi|355778774|gb|EHH63810.1| hypothetical protein EGM_16856, partial [Macaca fascicularis]
Length = 365
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 293 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 350
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 351 GRDYIFSKAIGDAEW 365
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 2 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 45
>gi|449542726|gb|EMD33704.1| hypothetical protein CERSUDRAFT_117780 [Ceriporiopsis subvermispora
B]
Length = 300
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+V +DKV R K++WKC LKDG++HIN KD LF K TGEF++
Sbjct: 258 IVFCTYDKVARVKNKWKCILKDGMIHINGKDYLFAKCTGEFEW 300
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ ++Y VI+DVI+ ++ EF G E VL ELQ WE K++ + V
Sbjct: 1 MSNKIVPVIYRAVIDDVIASIKPEFDEYGISEEVLAELQHKWENKVMASHV 51
>gi|114654237|ref|XP_001134883.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 2
[Pan troglodytes]
gi|410210940|gb|JAA02689.1| general transcription factor IIA, 1, 19/37kDa [Pan troglodytes]
gi|410256268|gb|JAA16101.1| general transcription factor IIA, 1, 19/37kDa [Pan troglodytes]
gi|410301958|gb|JAA29579.1| general transcription factor IIA, 1, 19/37kDa [Pan troglodytes]
gi|410331531|gb|JAA34712.1| general transcription factor IIA, 1, 19/37kDa [Pan troglodytes]
Length = 376
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 304 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 361
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 362 GRDYIFSKAIGDAEW 376
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|395503790|ref|XP_003756245.1| PREDICTED: transcription initiation factor IIA subunit 1
[Sarcophilus harrisii]
Length = 382
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 316 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 373
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 374 SKAIGDAEW 382
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y V+EDV++ VR+ F+++G E VL EL+ +WE K++Q+ +
Sbjct: 18 LYRSVMEDVLNDVREVFLDDGVDEQVLMELKTLWENKLMQSKAV 61
>gi|194907494|ref|XP_001981564.1| GG11539 [Drosophila erecta]
gi|190656202|gb|EDV53434.1| GG11539 [Drosophila erecta]
Length = 366
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F
Sbjct: 300 EEEPLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVF 357
Query: 398 NKATGEFDF 406
K+ G+ ++
Sbjct: 358 QKSNGDAEW 366
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ IW K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQIWRNKLLASKAV 54
>gi|301765872|ref|XP_002918356.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Ailuropoda melanoleuca]
Length = 376
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 304 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 361
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 362 GRDYIFSKAIGDAEW 376
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|426233748|ref|XP_004010876.1| PREDICTED: transcription initiation factor IIA subunit 1 [Ovis
aries]
gi|296482864|tpg|DAA24979.1| TPA: TFIIA alpha, p55-like [Bos taurus]
Length = 376
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 304 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 361
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 362 GRDYIFSKAIGDAEW 376
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|60099025|emb|CAH65343.1| hypothetical protein RCJMB04_19p6 [Gallus gallus]
Length = 338
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 272 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 329
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 330 SKAIGDAEW 338
>gi|449504455|ref|XP_002200584.2| PREDICTED: stonin-2 [Taeniopygia guttata]
Length = 1415
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 1349 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 1406
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 1407 SKAIGDAEW 1415
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 1052 LYRSVIEDVINDVREVFLDEGVDEQVLMELKTLWENKLMQSKAV 1095
>gi|11559984|ref|NP_071544.1| transcription initiation factor IIA subunit 1 [Rattus norvegicus]
gi|67461589|sp|O08949.1|TF2AA_RAT RecName: Full=Transcription initiation factor IIA subunit 1;
AltName: Full=General transcription factor IIA subunit
1; Contains: RecName: Full=Transcription initiation
factor IIA alpha chain; AltName: Full=TFIIA p35 subunit;
Contains: RecName: Full=Transcription initiation factor
IIA beta chain; AltName: Full=TFIIA p19 subunit
gi|2149996|gb|AAB58716.1| TFIIA large subunit [Rattus norvegicus]
gi|149025305|gb|EDL81672.1| general transcription factor 2a, 1 [Rattus norvegicus]
Length = 377
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 311 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIF 368
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 369 SKAIGDAEW 377
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|417399907|gb|JAA46934.1| Putative transcription initiation factor iia subunit 1 isoform 3
[Desmodus rotundus]
Length = 376
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 333 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 303 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 360
Query: 391 NNKDILFNKATGEFDF 406
N +D +F+KA G+ ++
Sbjct: 361 NGRDYIFSKAIGDAEW 376
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|440907254|gb|ELR57419.1| Transcription initiation factor IIA subunit 1, partial [Bos
grunniens mutus]
Length = 366
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 333 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 293 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 350
Query: 391 NNKDILFNKATGEFDF 406
N +D +F+KA G+ ++
Sbjct: 351 NGRDYIFSKAIGDAEW 366
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 3 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 46
>gi|281351391|gb|EFB26975.1| hypothetical protein PANDA_006799 [Ailuropoda melanoleuca]
Length = 366
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 333 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 293 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 350
Query: 391 NNKDILFNKATGEFDF 406
N +D +F+KA G+ ++
Sbjct: 351 NGRDYIFSKAIGDAEW 366
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 3 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 46
>gi|149586008|ref|XP_001512353.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Ornithorhynchus anatinus]
Length = 377
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 311 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 368
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 369 SKAIGDAEW 377
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VR+ F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVREVFLDDGVDEQVLLELKTLWENKLMQSKAV 56
>gi|195503814|ref|XP_002098811.1| GE23726 [Drosophila yakuba]
gi|194184912|gb|EDW98523.1| GE23726 [Drosophila yakuba]
Length = 366
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F
Sbjct: 300 EEEPLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVF 357
Query: 398 NKATGEFDF 406
K+ G+ ++
Sbjct: 358 QKSNGDAEW 366
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ IW K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQIWRNKLLASKAV 54
>gi|351694362|gb|EHA97280.1| Transcription initiation factor IIA subunit 1 [Heterocephalus
glaber]
Length = 393
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 327 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIF 384
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 385 SKAIGDAEW 393
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 30 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWESKLMQSRAV 73
>gi|291406681|ref|XP_002719614.1| PREDICTED: TFIIA alpha, p55 [Oryctolagus cuniculus]
Length = 387
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 315 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 372
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 373 GRDYIFSKAIGDAEW 387
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 24 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 67
>gi|126282183|ref|XP_001366986.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Monodelphis domestica]
Length = 377
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 311 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 368
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 369 SKAIGDAEW 377
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y V+EDV++ VR+ F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVMEDVLNDVREVFLDDGVDEQVLMELKTLWENKLMQSKAV 56
>gi|296215642|ref|XP_002754212.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 1
[Callithrix jacchus]
Length = 391
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 319 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 376
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 377 GRDYIFSKAIGDAEW 391
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 28 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 71
>gi|347921128|ref|NP_001026378.2| transcription initiation factor IIA subunit 1 [Gallus gallus]
gi|121308873|dbj|BAF43533.1| general transcription facter IIA subunit 1 variant 1 [Gallus
gallus]
Length = 377
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 311 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 368
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 369 SKAIGDAEW 377
>gi|390177656|ref|XP_003736447.1| GA19238, isoform C [Drosophila pseudoobscura pseudoobscura]
gi|388859137|gb|EIM52520.1| GA19238, isoform C [Drosophila pseudoobscura pseudoobscura]
Length = 317
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F
Sbjct: 251 EEEPLNSEDD--VTDEDSTETFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVF 308
Query: 398 NKATGEFDF 406
K+ G+ ++
Sbjct: 309 QKSNGDAEW 317
>gi|410962779|ref|XP_003987946.1| PREDICTED: transcription initiation factor IIA subunit 1 [Felis
catus]
Length = 349
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 283 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIF 340
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 341 SKAIGDAEW 349
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|410916155|ref|XP_003971552.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 2 [Takifugu rubripes]
Length = 384
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 54/69 (78%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN ++DD D+ DQ E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 318 EEEPLN-SEDDVSDEEDQ-ELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 375
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 376 SKAIGDAEW 384
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA+SA +Y VI+DVI++VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 1 MASSANSNPVPKLYKSVIDDVINEVRELFLDEGVDEQVLLELKTLWENKLLQSKAV 56
>gi|410916157|ref|XP_003971553.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 3 [Takifugu rubripes]
Length = 373
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 54/69 (78%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN ++DD D+ DQ E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 307 EEEPLN-SEDDVSDEEDQ-ELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 364
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 365 SKAIGDAEW 373
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA+SA +Y VI+DVI++VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 1 MASSANSNPVPKLYKSVIDDVINEVRELFLDEGVDEQVLLELKTLWENKLLQSKAV 56
>gi|226958572|ref|NP_113568.2| transcription initiation factor IIA subunit 1 isoform 1 [Mus
musculus]
gi|67462078|sp|Q99PM3.2|TF2AA_MOUSE RecName: Full=Transcription initiation factor IIA subunit 1;
AltName: Full=General transcription factor IIA subunit
1; Contains: RecName: Full=Transcription initiation
factor IIA alpha chain; AltName: Full=TFIIA p35 subunit;
Contains: RecName: Full=Transcription initiation factor
IIA beta chain; AltName: Full=TFIIA p19 subunit
gi|148687004|gb|EDL18951.1| general transcription factor II A, 1, isoform CRA_b [Mus musculus]
Length = 378
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 333 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 305 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 362
Query: 391 NNKDILFNKATGEFDF 406
N +D +F+KA G+ ++
Sbjct: 363 NGRDYIFSKAIGDAEW 378
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|327259290|ref|XP_003214471.1| PREDICTED: stonin-2-like [Anolis carolinensis]
Length = 1247
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 1181 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 1238
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 1239 SKAIGDAEW 1247
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VR+ F++ E VL EL+ +WE K++Q+ +
Sbjct: 875 LYRSVIEDVINDVREVFLDASVDEQVLVELKTLWENKLLQSKAV 918
>gi|148687003|gb|EDL18950.1| general transcription factor II A, 1, isoform CRA_a [Mus musculus]
Length = 368
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 333 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 295 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 352
Query: 391 NNKDILFNKATGEFDF 406
N +D +F+KA G+ ++
Sbjct: 353 NGRDYIFSKAIGDAEW 368
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 3 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 46
>gi|449274838|gb|EMC83916.1| Transcription initiation factor IIA subunit 1, partial [Columba
livia]
Length = 367
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 301 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 358
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 359 SKAIGDAEW 367
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 3 LYRSVIEDVINDVREVFLDEGVDEQVLMELKTLWENKLMQSKAV 46
>gi|355693872|gb|AER99480.1| proteinral transcription factor IIA, 1, 19/37kDa [Mustela putorius
furo]
Length = 358
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 49/66 (74%), Gaps = 2/66 (3%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 293 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIF 350
Query: 398 NKATGE 403
+KA G+
Sbjct: 351 SKAIGD 356
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 14 IEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
IEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 1 IEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 39
>gi|367052443|ref|XP_003656600.1| hypothetical protein THITE_2121465 [Thielavia terrestris NRRL 8126]
gi|347003865|gb|AEO70264.1| hypothetical protein THITE_2121465 [Thielavia terrestris NRRL 8126]
Length = 392
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 349 HMMLCMYDKVQRVKNKWKCILKDGVLTVNGKEYVFHKATGEYEW 392
>gi|390177658|ref|XP_003736448.1| GA19238, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859138|gb|EIM52521.1| GA19238, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 359
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F
Sbjct: 293 EEEPLNSEDD--VTDEDSTETFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVF 350
Query: 398 NKATGEFDF 406
K+ G+ ++
Sbjct: 351 QKSNGDAEW 359
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ IW K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQIWRNKLLASKAV 54
>gi|396481519|ref|XP_003841259.1| hypothetical protein LEMA_P091890.1 [Leptosphaeria maculans JN3]
gi|312217833|emb|CBX97780.1| hypothetical protein LEMA_P091890.1 [Leptosphaeria maculans JN3]
Length = 391
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 335 EDDDDEPLNENDDDELDDVDQGEELNTQHL--VLAQFDKVTRTKSRWKCALKDGIMHINN 392
E+D D+ +N + DD D+++ G+ + + +L +DKV R K++WKC LKDGI+ N
Sbjct: 318 EEDPDDAINSDLDDPEDELNDGDNSDDDMVDYMLCTYDKVQRVKNKWKCTLKDGILTTNK 377
Query: 393 KDILFNKATGEFDF 406
K+ LF+KA GEF++
Sbjct: 378 KEYLFHKANGEFEW 391
>gi|410916153|ref|XP_003971551.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 1 [Takifugu rubripes]
Length = 359
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 54/69 (78%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN ++DD D+ DQ E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 293 EEEPLN-SEDDVSDEEDQ-ELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 350
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 351 SKAIGDAEW 359
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA+SA +Y VI+DVI++VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 1 MASSANSNPVPKLYKSVIDDVINEVRELFLDEGVDEQVLLELKTLWENKLLQSKAV 56
>gi|400601848|gb|EJP69473.1| transcription factor IIA [Beauveria bassiana ARSEF 2860]
Length = 358
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 315 HIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 358
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ A G VY +I +VI R +F +G ESVL EL+ +W+ K+ Q V
Sbjct: 1 MSNQAVGNVYQTIINEVIDGSRVDFDESGVEESVLEELRQVWQQKLTQLDV 51
>gi|198451436|ref|XP_001358368.2| GA19238, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131489|gb|EAL27507.2| GA19238, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 356
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F
Sbjct: 290 EEEPLNSEDD--VTDEDSTETFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVF 347
Query: 398 NKATGEFDF 406
K+ G+ ++
Sbjct: 348 QKSNGDAEW 356
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ IW K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQIWRNKLLASKAV 54
>gi|302409934|ref|XP_003002801.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261358834|gb|EEY21262.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 416
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 373 HIMLCMYDKVQRVKNKWKCVLKDGVLTVNGKEYVFHKATGEYEW 416
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQ 48
M+ + G VY +VIEDVIS R +F G + VL EL+ W+ K+ Q
Sbjct: 1 MSNNVVGNVYQQVIEDVISASRVDFEEGGVEDGVLEELKRGWQQKLSQ 48
>gi|116182054|ref|XP_001220876.1| hypothetical protein CHGG_01655 [Chaetomium globosum CBS 148.51]
gi|88185952|gb|EAQ93420.1| hypothetical protein CHGG_01655 [Chaetomium globosum CBS 148.51]
Length = 386
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 35/44 (79%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC LKDG++ +N K+ +F KATGE+++
Sbjct: 343 HMMLCMYDKVQRVKNKWKCVLKDGVLTVNGKEYVFTKATGEYEW 386
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQ 48
M+ +A G VY +I +V++ VR +F NG E L +L+ W+ K+ Q
Sbjct: 1 MSNAAVGHVYDTIIAEVVNAVRVDFEENGVDEGALEDLKKTWQHKLTQ 48
>gi|213404368|ref|XP_002172956.1| conserved hypothetical protein [Schizosaccharomyces japonicus
yFS275]
gi|212001003|gb|EEB06663.1| conserved hypothetical protein [Schizosaccharomyces japonicus
yFS275]
Length = 372
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 352 DVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+ ++G ++ Q +VL +DKV R K++WKC LKDGI+ +N KD LF KA GEF++
Sbjct: 318 ETEEGSDIG-QAIVLCLYDKVNRNKNKWKCVLKDGIVGVNGKDYLFFKANGEFEW 371
>gi|322712087|gb|EFZ03660.1| transcription factor TFIIA complex subunit Toa1, putative
[Metarhizium anisopliae ARSEF 23]
Length = 357
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 314 HIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 357
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ A G VY +I++VI+ R +F +G E+VL EL+ W+ K+ Q +D P
Sbjct: 1 MSNQAVGTVYQTIIDEVINSSRVDFEESGVEENVLEELRQGWQQKLSQ----LDVARFPW 56
Query: 61 QPAP 64
P P
Sbjct: 57 DPKP 60
>gi|346971770|gb|EGY15222.1| hypothetical protein VDAG_06076 [Verticillium dahliae VdLs.17]
Length = 412
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 369 HIMLCMYDKVQRVKNKWKCVLKDGVLTVNGKEYVFHKATGEYEW 412
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ + G VY +VIE+VIS R +F G + VL EL+ W+ K+ Q ++ S P
Sbjct: 1 MSNNVVGNVYQQVIEEVISASRVDFEEGGVEDGVLEELKRGWQQKLSQ----LEVASFPW 56
Query: 61 QPAP 64
P P
Sbjct: 57 DPKP 60
>gi|405123855|gb|AFR98618.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii H99]
Length = 210
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 352 DVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
DVD GE+ N +V +DKV R K++WK KDG++H+N KD LF K GEF++
Sbjct: 156 DVDGGEDENDVDIVFCVYDKVQRVKNKWKTVFKDGMIHLNGKDYLFAKCNGEFEW 210
>gi|310790026|gb|EFQ25559.1| transcription factor IIA [Glomerella graminicola M1.001]
Length = 375
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 332 HIMLCMYDKVQRVKNKWKCVLKDGVLTVNGKEYVFHKATGEYEW 375
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQ 48
M+ +A G VY ++I +VI+ R +F G ESVL+EL+ W+ K+ Q
Sbjct: 1 MSNNAVGAVYEQIIAEVINSSRVDFEEGGVDESVLDELKKGWQEKLSQ 48
>gi|322695934|gb|EFY87734.1| transcription factor TFIIA complex subunit Toa1, putative
[Metarhizium acridum CQMa 102]
Length = 363
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 320 HIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 363
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ A G VY +I++VI+ R +F +G E+VL EL+ W+ K+ Q +D P
Sbjct: 1 MSNQAVGTVYQTIIDEVINSSRVDFEESGVEENVLEELRQGWQQKLSQ----LDVARFPW 56
Query: 61 QPAP 64
P P
Sbjct: 57 DPKP 60
>gi|157114954|ref|XP_001652503.1| tfiia large subunit [Aedes aegypti]
gi|108877133|gb|EAT41358.1| AAEL007022-PA [Aedes aegypti]
Length = 367
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D D + +T ++V+ Q+DK+TR++++WK LKDGIM+I KD +F
Sbjct: 301 EEEPLNSEDD--VTDEDASDLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNITGKDYVF 358
Query: 398 NKATGEFDF 406
K+ G+ ++
Sbjct: 359 QKSNGDAEW 367
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VI+DVI+ VRD F++ G E VL E++ +W K++ + +
Sbjct: 1 MALSQTSVLKLYNTVIDDVIAGVRDAFLDEGVDEQVLQEMKQVWTAKLMASKAV 54
>gi|58262280|ref|XP_568550.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans JEC21]
gi|134118844|ref|XP_771925.1| hypothetical protein CNBN1050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254529|gb|EAL17278.1| hypothetical protein CNBN1050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230724|gb|AAW47033.1| general RNA polymerase II transcription factor, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 211
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 352 DVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
DVD GE+ N +V +DKV R K++WK KDG++H+N KD LF K GEF++
Sbjct: 157 DVDGGEDENDVDIVFCVYDKVQRVKNKWKTVFKDGMIHLNGKDYLFAKCNGEFEW 211
>gi|347968941|ref|XP_311940.5| AGAP002958-PA [Anopheles gambiae str. PEST]
gi|333467770|gb|EAA07559.5| AGAP002958-PA [Anopheles gambiae str. PEST]
Length = 516
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D D + +T ++V+ Q+DK+TR++++WK LKDGIMHI KD +F K+
Sbjct: 453 PLNSEDD--VTDEDASDLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMHIGGKDYVFQKS 510
Query: 401 TGEFDF 406
G+ ++
Sbjct: 511 NGDAEW 516
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSA 58
M+ S T + VY VI+DVI+ VRD F++ G E VL E++ +W K++ I +
Sbjct: 1 MSLSQTSVLKVYTTVIDDVIAGVRDAFLDEGVDEQVLQEMKQVWTSKLLACKAIESTPES 60
Query: 59 PKQPAPG 65
Q A G
Sbjct: 61 QDQQAGG 67
>gi|170032710|ref|XP_001844223.1| TFIIA [Culex quinquefasciatus]
gi|167873053|gb|EDS36436.1| TFIIA [Culex quinquefasciatus]
Length = 304
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D D + +T ++V+ Q+DK+TR++++WK LKDGIM+I+ KD +F
Sbjct: 238 EEEPLNSEDD--VTDEDASDLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNISGKDYVF 295
Query: 398 NKATGEFDF 406
K+ G+ ++
Sbjct: 296 QKSNGDAEW 304
>gi|348506372|ref|XP_003440733.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Oreochromis niloticus]
Length = 375
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 52/76 (68%), Gaps = 4/76 (5%)
Query: 333 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
AED ++EPLN DD + D + E T ++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 302 GAEDGQVEEEPLNSGDD--VSDEEDQELFETDNVVVCQYDKIHRSKNKWKFHLKDGIMNL 359
Query: 391 NNKDILFNKATGEFDF 406
N +D +F+KA G+ ++
Sbjct: 360 NGRDYVFSKAIGDAEW 375
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA+SA +Y VI+DVIS+VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 1 MASSANSNPVPKLYKNVIDDVISEVRELFLDEGVDEQVLLELKTLWENKLLQSKAV 56
>gi|380487602|emb|CCF37932.1| transcription factor IIA [Colletotrichum higginsianum]
Length = 380
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 337 HIMLCMYDKVQRVKNKWKCILKDGVLTVNGKEYVFHKATGEYEW 380
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQ 48
M+ +A G+VY ++I +VIS R +F G ESVL EL+ W+ K+ Q
Sbjct: 1 MSNNAVGVVYEQIINEVISSSRVDFEEGGVDESVLEELKKGWQEKLSQ 48
>gi|66803983|ref|XP_635803.1| transcription factor IIA, large chain [Dictyostelium discoideum
AX4]
gi|74851854|sp|Q54G80.1|TF2AA_DICDI RecName: Full=Transcription initiation factor IIA subunit 1;
AltName: Full=General transcription factor IIA subunit 1
gi|60464129|gb|EAL62290.1| transcription factor IIA, large chain [Dictyostelium discoideum
AX4]
Length = 310
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 362 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 404
+H VL Q++KV+R K++ KC KDGIMH+N KD LFNKA GE
Sbjct: 265 EHFVLCQYEKVSRIKNKRKCNFKDGIMHLNGKDTLFNKANGEM 307
>gi|321265542|ref|XP_003197487.1| general RNA polymerase II transcription factor [Cryptococcus gattii
WM276]
gi|317463967|gb|ADV25700.1| General RNA polymerase II transcription factor, putative
[Cryptococcus gattii WM276]
Length = 210
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 352 DVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
DVD GE+ N +V +DKV R K++WK KDG++H+N KD LF K GEF++
Sbjct: 156 DVDGGEDDNDVDIVFCVYDKVQRVKNKWKTVFKDGMIHLNGKDYLFAKCNGEFEW 210
>gi|156053762|ref|XP_001592807.1| hypothetical protein SS1G_05728 [Sclerotinia sclerotiorum 1980]
gi|154703509|gb|EDO03248.1| hypothetical protein SS1G_05728 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 475
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 36/44 (81%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC +KDG++ +N K+ +F+KATGE+++
Sbjct: 432 HIMLCMYDKVQRVKNKWKCVMKDGVLTVNGKEYVFHKATGEYEW 475
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV-IIDRTSAP 59
M+ + G VY ++I DV+ R +F G E VL EL+ W+ K+ Q V + P
Sbjct: 1 MSNTQVGNVYQQIIADVVDSSRVDFEEGGVDEVVLEELRKGWQTKLSQLQVALFPWDPKP 60
Query: 60 KQPAPGGPITP 70
QP P+ P
Sbjct: 61 DQPMQNPPMVP 71
>gi|347968943|ref|XP_003436325.1| AGAP002958-PB [Anopheles gambiae str. PEST]
gi|333467771|gb|EGK96688.1| AGAP002958-PB [Anopheles gambiae str. PEST]
Length = 224
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D D + +T ++V+ Q+DK+TR++++WK LKDGIMHI KD +F K+
Sbjct: 161 PLNSEDD--VTDEDASDLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMHIGGKDYVFQKS 218
Query: 401 TGEFDF 406
G+ ++
Sbjct: 219 NGDAEW 224
>gi|346321639|gb|EGX91238.1| transcription factor TFIIA complex subunit Toa1, putative
[Cordyceps militaris CM01]
Length = 436
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 393 HIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 436
>gi|154282827|ref|XP_001542209.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410389|gb|EDN05777.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 445
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 331 NDAAEDDDDEPLNENDDDE---LDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGI 387
N E+ D++ +N + DD LDD + G++ Q ++L +DKV R KS+WKC LKDGI
Sbjct: 367 NTGREEADEDAINSDLDDSEDMLDDSNDGDDAVGQ-VMLCTYDKVQRVKSKWKCTLKDGI 425
Query: 388 MHINNKDILFNKATGEFDF 406
+ K+ +F+K GEF++
Sbjct: 426 LTSGGKEYVFHKGQGEFEW 444
>gi|367018696|ref|XP_003658633.1| hypothetical protein MYCTH_2294640 [Myceliophthora thermophila ATCC
42464]
gi|347005900|gb|AEO53388.1| hypothetical protein MYCTH_2294640 [Myceliophthora thermophila ATCC
42464]
Length = 400
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 35/44 (79%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC LKDG++ +N K+ +F KATGE+++
Sbjct: 357 HMMLCMYDKVQRVKNKWKCILKDGVLTVNGKEYVFAKATGEYEW 400
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQ 48
M+ +A G VY +I +VI+ VR +F NG +S L +L+ W+ K+ Q
Sbjct: 1 MSNAAVGPVYDTIITEVINAVRVDFEENGVDDSALEDLKKTWQHKLSQ 48
>gi|429853635|gb|ELA28695.1| transcription factor tfiia complex subunit [Colletotrichum
gloeosporioides Nara gc5]
Length = 367
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 324 HIMLCMYDKVQRVKNKWKCILKDGVLTVNGKEYVFHKATGEYEW 367
>gi|254584188|ref|XP_002497662.1| ZYRO0F10692p [Zygosaccharomyces rouxii]
gi|238940555|emb|CAR28729.1| ZYRO0F10692p [Zygosaccharomyces rouxii]
Length = 243
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 48/66 (72%), Gaps = 3/66 (4%)
Query: 342 LNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDGI+ +N KD F K+
Sbjct: 179 LDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGIVTVNRKDYTFQKS 236
Query: 401 TGEFDF 406
E ++
Sbjct: 237 QVEAEW 242
Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ VY +++ V+++VR++F N G E L +L+ +W++K+ + V
Sbjct: 1 MSNPEASRVYELIVDSVVNEVREDFENAGIDEQTLQDLKRVWQIKLSETQV 51
>gi|148670779|gb|EDL02726.1| mCG50192 [Mus musculus]
Length = 382
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 51/69 (73%), Gaps = 4/69 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD+L D + E +T+++V+ Q+DK+ R+K++WK LKDG+M++N
Sbjct: 301 AEDGQVEEEPLN--SDDDLSDEEGQEPFDTENVVVCQYDKIHRSKNKWKFHLKDGVMNLN 358
Query: 392 NKDILFNKA 400
+D +F+KA
Sbjct: 359 GRDYIFSKA 367
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+N+G E VL EL+ +WE ++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLNDGVDEQVLTELKALWEKNLLQSRAV 56
>gi|406859010|gb|EKD12083.1| transcription factor IIA [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 487
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 36/44 (81%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC +KDG++ +N K+ +F+KA+GE+++
Sbjct: 444 HIMLCMYDKVQRVKNKWKCVMKDGVLTVNGKEYVFHKASGEYEW 487
>gi|325652066|ref|NP_001191795.1| TFIIA-alpha and beta-like factor [Gallus gallus]
Length = 493
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 51/77 (66%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN +DD + D+D + +T ++++ Q++K+ R+K++WK LKDG+M
Sbjct: 422 QTDVVEED---PLNSDDD--VSDLDIADLFDTNNVIVCQYEKIHRSKNKWKFFLKDGVMS 476
Query: 390 INNKDILFNKATGEFDF 406
N KD +F KA G+ ++
Sbjct: 477 FNGKDYVFAKAVGDAEW 493
>gi|24650582|ref|NP_733208.1| transcription factor IIA L, isoform C [Drosophila melanogaster]
gi|23172422|gb|AAN14106.1| transcription factor IIA L, isoform C [Drosophila melanogaster]
Length = 324
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 261 PLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 318
Query: 401 TGEFDF 406
G+ ++
Sbjct: 319 NGDAEW 324
>gi|38492544|pdb|1NVP|C Chain C, Human TfiiaTBPDNA COMPLEX
Length = 76
Score = 64.7 bits (156), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 333 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 3 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 60
Query: 391 NNKDILFNKATGEFDF 406
N +D +F+KA G+ ++
Sbjct: 61 NGRDYIFSKAIGDAEW 76
>gi|452983097|gb|EME82855.1| hypothetical protein MYCFIDRAFT_64208 [Pseudocercospora fijiensis
CIRAD86]
Length = 396
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 18/101 (17%)
Query: 322 ASTPAVVTQNDAAEDDDDEPLNENDDDELDDV----------------DQGEELNTQHLV 365
++TP + Q D D+DDE + D+D+ + + D +EL +
Sbjct: 298 SATPPFIPQLDGDADEDDEKPDIKDEDDENAINSDLDDSDDDGAGAMGDDEDELGDS--I 355
Query: 366 LAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
L +DKV R K++WKC LKDG+M +N K+ +F+K GEF++
Sbjct: 356 LCTYDKVQRVKNKWKCTLKDGVMSVNGKEWVFHKGMGEFEW 396
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M + G VY ++IE+V++ +F NG G + L ELQ W+ K+ GV
Sbjct: 1 MTNNLVGDVYAKIIEEVVAASSADFEENGVGSTTLQELQQEWQAKLSARGV 51
>gi|393217149|gb|EJD02638.1| transcription factor IIA, alpha/beta subunit [Fomitiporia
mediterranea MF3/22]
Length = 293
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 354 DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+Q L +V +DKV R K++WKC LKDG++H+N KD LF + T EF++
Sbjct: 241 EQEGALGETDIVFCTYDKVARVKNKWKCVLKDGMIHVNGKDYLFGRCTCEFEW 293
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ +Y +I+DVI+ ++ +F + G GE VL++LQ WE K+I + V
Sbjct: 1 MSNKIVPAIYRAIIDDVITNIKSDFDDFGVGEDVLSDLQSRWENKVIASHV 51
>gi|430812851|emb|CCJ29749.1| unnamed protein product [Pneumocystis jirovecii]
Length = 307
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 14/99 (14%)
Query: 315 PAPNDIQASTPAV-VTQNDAAEDD------DDEPLNENDDDELDDVDQGEELNTQHLVLA 367
P + P+V +TQ D + D D EP N N +D ++ D G+ LVL
Sbjct: 216 PVDMSLHLVQPSVSLTQTDGMDSDSINSDLDSEP-NSNPEDGPENDDNGQ------LVLC 268
Query: 368 QFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+DKV RTK++WKC LKDGI+ + KD LF +A GEF++
Sbjct: 269 LYDKVQRTKNKWKCVLKDGIIGMGGKDYLFMRANGEFEW 307
>gi|427786209|gb|JAA58556.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 312
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 5/80 (6%)
Query: 330 QNDAAED---DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDG 386
Q+D ED ++ EPLN +DD + D + E ++V+ Q+DK++R+++RWK KDG
Sbjct: 235 QDDENEDGPQEEVEPLNSDDD--VSDEEATENFEIDNVVVCQYDKISRSRNRWKFHFKDG 292
Query: 387 IMHINNKDILFNKATGEFDF 406
IM++ KD +F KA G+ ++
Sbjct: 293 IMNLQGKDYVFQKAVGDAEW 312
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA + +Y VIEDVI+ V+D F++ G E L EL+ IWE K++++ I
Sbjct: 1 MAAAGVPKLYRSVIEDVINGVKDVFLDEGVDEQALLELRQIWEKKLLESKAI 52
>gi|330804645|ref|XP_003290303.1| hypothetical protein DICPUDRAFT_92459 [Dictyostelium purpureum]
gi|325079590|gb|EGC33183.1| hypothetical protein DICPUDRAFT_92459 [Dictyostelium purpureum]
Length = 309
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 362 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 404
+H VL Q++KVTR K++ KC KDGIMH+N KD LF+KA GE
Sbjct: 264 EHYVLCQYEKVTRIKNKRKCIFKDGIMHLNGKDSLFHKANGEV 306
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Query: 9 VYIRVIEDVISKVRDE----FVNNGPGESVLNELQGIWEMKMIQAGVI 52
VY +IE+VI ++ E F N+G +++++E+Q +WE ++ Q+G I
Sbjct: 6 VYKYIIEEVIRNIKTELKEDFANDGLQDTIIDEIQHMWEARLEQSGAI 53
>gi|390362858|ref|XP_003730243.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Strongylocentrotus purpuratus]
Length = 139
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 333 AAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINN 392
AA +D+++PLN DD + D D + ++++V+ Q+DK+ R +++WK LK GIM++
Sbjct: 68 AAGEDEEDPLNSADD--VSDEDPADLFESENVVVCQYDKINRNRNKWKFTLKHGIMNLKG 125
Query: 393 KDILFNKATGEFDF 406
KD +FNK+TG+ D+
Sbjct: 126 KDYVFNKSTGDADW 139
>gi|12313735|gb|AAG50431.1|AF250834_1 TFIIA alpha/beta [Mus musculus]
Length = 378
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 55/77 (71%), Gaps = 6/77 (7%)
Query: 333 AAEDD--DDEPLNENDDDELDDVDQGEEL-NTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
AED ++EPLN DD ++ G+EL + +++V+ Q+DK+ R+K++WK LKDGIM+
Sbjct: 305 GAEDGQVEEEPLNSEDDVSGEE---GQELFDAENVVVCQYDKIHRSKNKWKFHLKDGIMN 361
Query: 390 INNKDILFNKATGEFDF 406
+N +D +F+KA G+ ++
Sbjct: 362 LNGRDYIFSKAIGDAEW 378
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|17136920|ref|NP_476995.1| transcription factor IIA L, isoform A [Drosophila melanogaster]
gi|71153182|sp|P52654.2|TF2AA_DROME RecName: Full=Transcription initiation factor IIA subunit 1;
AltName: Full=General transcription factor IIA subunit
1; AltName: Full=dTFIIA-L; Contains: RecName:
Full=Transcription initiation factor IIA alpha chain;
AltName: Full=TFIIA p30 subunit; Contains: RecName:
Full=Transcription initiation factor IIA beta chain;
AltName: Full=TFIIA p20 subunit
gi|16769308|gb|AAL28873.1| LD24213p [Drosophila melanogaster]
gi|23172420|gb|AAF56687.2| transcription factor IIA L, isoform A [Drosophila melanogaster]
gi|220952474|gb|ACL88780.1| TfIIA-L-PA [synthetic construct]
Length = 366
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 303 PLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 360
Query: 401 TGEFDF 406
G+ ++
Sbjct: 361 NGDAEW 366
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ +W K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAV 54
>gi|17136922|ref|NP_476996.1| transcription factor IIA L, isoform B [Drosophila melanogaster]
gi|23172421|gb|AAN14105.1| transcription factor IIA L, isoform B [Drosophila melanogaster]
gi|323429949|gb|ADX64761.1| LP04237p [Drosophila melanogaster]
Length = 363
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 300 PLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 357
Query: 401 TGEFDF 406
G+ ++
Sbjct: 358 NGDAEW 363
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ +W K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAV 54
>gi|444320645|ref|XP_004180979.1| hypothetical protein TBLA_0E04050 [Tetrapisispora blattae CBS 6284]
gi|387514022|emb|CCH61460.1| hypothetical protein TBLA_0E04050 [Tetrapisispora blattae CBS 6284]
Length = 255
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Query: 342 LNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
L+++DDD L + +GE+ ++LVL ++KVTRTK+RWKC+LKDGI IN KD F KA
Sbjct: 191 LDDSDDDYL--ISEGEDDGPDENLVLCLYEKVTRTKARWKCSLKDGIATINRKDYTFQKA 248
Query: 401 TGEFDF 406
E ++
Sbjct: 249 QVEAEW 254
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ S VY +++E V+++VR++F N G E L +L+ +W K+ ++ V
Sbjct: 1 MSNSEASKVYEQIVESVVNEVREDFENAGIDEQTLQDLKRVWTKKITESQV 51
>gi|261189957|ref|XP_002621389.1| transcription factor TFIIA complex subunit Toa1 [Ajellomyces
dermatitidis SLH14081]
gi|239591625|gb|EEQ74206.1| transcription factor TFIIA complex subunit Toa1 [Ajellomyces
dermatitidis SLH14081]
Length = 451
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 335 EDDDDEPLNENDDDE---LDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
E+ D++ +N + DD LDD + G++ Q ++L +DKV R KS+WKC LKDGI+
Sbjct: 377 EEADEDAINSDLDDSEDMLDDHNDGDDAVGQ-VMLCTYDKVQRVKSKWKCTLKDGILTSG 435
Query: 392 NKDILFNKATGEFDF 406
K+ +F+K GEF++
Sbjct: 436 GKEYVFHKGQGEFEW 450
>gi|452955|gb|AAB28821.1| TFIIA-L [Drosophila sp.]
Length = 366
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 303 PLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 360
Query: 401 TGEFDF 406
G+ ++
Sbjct: 361 NGDAEW 366
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ +W K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVITNVRDGFLDEGVDEQVLQEMKQVWRNKLLASKAV 54
>gi|239612843|gb|EEQ89830.1| transcription factor TFIIA complex subunit Toa1 [Ajellomyces
dermatitidis ER-3]
Length = 438
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 335 EDDDDEPLNENDDDE---LDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
E+ D++ +N + DD LDD + G++ Q ++L +DKV R KS+WKC LKDGI+
Sbjct: 364 EEADEDAINSDLDDSEDMLDDHNDGDDAVGQ-VMLCTYDKVQRVKSKWKCTLKDGILTSG 422
Query: 392 NKDILFNKATGEFDF 406
K+ +F+K GEF++
Sbjct: 423 GKEYVFHKGQGEFEW 437
>gi|195349918|ref|XP_002041489.1| GM10381 [Drosophila sechellia]
gi|194123184|gb|EDW45227.1| GM10381 [Drosophila sechellia]
Length = 366
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 303 PLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 360
Query: 401 TGEFDF 406
G+ ++
Sbjct: 361 NGDAEW 366
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ +W K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAV 54
>gi|367009180|ref|XP_003679091.1| hypothetical protein TDEL_0A05480 [Torulaspora delbrueckii]
gi|359746748|emb|CCE89880.1| hypothetical protein TDEL_0A05480 [Torulaspora delbrueckii]
Length = 257
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Query: 342 LNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDGI +N KD F K+
Sbjct: 193 LDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGIATVNRKDYTFQKS 250
Query: 401 TGEFDF 406
E ++
Sbjct: 251 QVEAEW 256
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ VY +++ V+++VR++F N G E L +L+ +W++K+ + V + + P+
Sbjct: 1 MSNPEASRVYEVIVDSVVNEVREDFENAGIDEQTLQDLKRVWQLKLSETRV-ANFSWDPQ 59
Query: 61 QPAPGGPITPV 71
+ + PI V
Sbjct: 60 EKSFQQPIASV 70
>gi|189197165|ref|XP_001934920.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187980868|gb|EDU47494.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 389
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 335 EDDDDEPLNENDDDELDDVDQGEELNTQHL--VLAQFDKVTRTKSRWKCALKDGIMHINN 392
E+D D+ +N + DD D++ G+ + + +L +DKV R K++WKC LKDGI+ N
Sbjct: 316 EEDPDDAINSDLDDSEDELGDGDNSDDDMVDYMLCTYDKVQRVKNKWKCTLKDGILTTNK 375
Query: 393 KDILFNKATGEFDF 406
K+ LF+KA E +F
Sbjct: 376 KEYLFHKANAELEF 389
>gi|313661529|gb|ADR71719.1| AT09437p [Drosophila melanogaster]
Length = 376
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 313 PLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 370
Query: 401 TGEFDF 406
G+ ++
Sbjct: 371 NGDAEW 376
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ +W K++ + +
Sbjct: 14 MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAV 67
>gi|330923534|ref|XP_003300277.1| hypothetical protein PTT_11476 [Pyrenophora teres f. teres 0-1]
gi|311325663|gb|EFQ91622.1| hypothetical protein PTT_11476 [Pyrenophora teres f. teres 0-1]
Length = 383
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 325 PAVVTQNDAA--EDDDDEPLNENDDDELDDVDQGEELNTQHL--VLAQFDKVTRTKSRWK 380
PA +D A E+D D+ +N + DD D++ G+ + + +L +DKV R K++WK
Sbjct: 298 PARFDGDDEAKPEEDPDDAINSDLDDSEDELGDGDNSDDDMVDYMLCTYDKVQRVKNKWK 357
Query: 381 CALKDGIMHINNKDILFNKATGEFDF 406
C LKDGI+ N K+ LF+KA E +F
Sbjct: 358 CTLKDGILTTNKKEYLFHKANAELEF 383
>gi|196016011|ref|XP_002117860.1| hypothetical protein TRIADDRAFT_61892 [Trichoplax adhaerens]
gi|190579529|gb|EDV19622.1| hypothetical protein TRIADDRAFT_61892 [Trichoplax adhaerens]
Length = 200
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 333 AAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINN 392
+A+ +DDEPLN +DD +D E + ++++ Q+DKVTR +S+WK LKDGIM+I
Sbjct: 128 SAKLEDDEPLNTDDDASDEDDIDSFECD--NVIVCQYDKVTRARSKWKLHLKDGIMNIGG 185
Query: 393 KDILFNKATGEFDF 406
D +FNKA+G+ D+
Sbjct: 186 NDYVFNKASGDCDW 199
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VI DVI +R F+N G E VL EL+ WE+K++Q+ + + + ++ A +
Sbjct: 13 LYHYVINDVIRSIRQSFLNRGVDEQVLQELKSQWELKIVQSRSVKEFVAEDQRTASASNV 72
Query: 69 TPVHDLNVPYEGTEEY-ETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGS 121
H P + + T ++ F + + L ++ P + G+
Sbjct: 73 MYPHGNRFPIDALSQVNNTRHSKGTFSVYIFTSQTKCLLNNASEFPSYSASTGA 126
>gi|308800350|ref|XP_003074956.1| Tf2al transcription factor IIa large subunit 3, TFIIA3, putative
(IC) [Ostreococcus tauri]
gi|119358839|emb|CAL52226.2| Tf2al transcription factor IIa large subunit 3, TFIIA3, putative
(IC) [Ostreococcus tauri]
Length = 179
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 340 EPLNENDDDEL--DDVDQGEELN--TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDI 395
+P+ + D + L D D E+ T +LVL+QF+KV RTK++WKC+ KDGIM +N +
Sbjct: 109 QPVCQKDTESLSSDSEDNTLEMEPPTSNLVLSQFEKVARTKNKWKCSFKDGIMLLNGSEY 168
Query: 396 LFNKATGEF 404
+F KA EF
Sbjct: 169 VFGKANAEF 177
>gi|366991537|ref|XP_003675534.1| hypothetical protein NCAS_0C01780 [Naumovozyma castellii CBS 4309]
gi|342301399|emb|CCC69168.1| hypothetical protein NCAS_0C01780 [Naumovozyma castellii CBS 4309]
Length = 242
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 53/74 (71%), Gaps = 6/74 (8%)
Query: 337 DDDE---PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINN 392
D+DE L+++DDD L + +GE+ ++L+L +DKVTRTK+RWKC+LKDGI+ IN+
Sbjct: 170 DNDEVGSELDDSDDDYL--ISEGEDDGPDENLMLCLYDKVTRTKARWKCSLKDGIVTINH 227
Query: 393 KDILFNKATGEFDF 406
KD F KA E ++
Sbjct: 228 KDYSFQKAQVEAEW 241
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ VY +++ VI++VR++F N G E L +L+ +W+ K+ + V
Sbjct: 1 MSNPEASKVYELIVDSVINEVREDFENAGIDEQTLQDLKRVWQTKLTETKV 51
>gi|194745758|ref|XP_001955354.1| GF16279 [Drosophila ananassae]
gi|190628391|gb|EDV43915.1| GF16279 [Drosophila ananassae]
Length = 364
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D D E T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 301 PLNSEDD--VTDEDSAEMFETDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 358
Query: 401 TGEFDF 406
G+ ++
Sbjct: 359 NGDAEW 364
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ IW K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQIWRNKLLASKAV 54
>gi|327352009|gb|EGE80866.1| transcription factor TFIIA complex subunit Toa1 [Ajellomyces
dermatitidis ATCC 18188]
Length = 476
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 335 EDDDDEPLNENDDDE---LDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
E+ D++ +N + DD LDD + G++ Q ++L +DKV R KS+WKC LKDGI+
Sbjct: 402 EEADEDAINSDLDDSEDMLDDHNDGDDAVGQ-VMLCTYDKVQRVKSKWKCTLKDGILTSG 460
Query: 392 NKDILFNKATGEFDF 406
K+ +F+K GEF++
Sbjct: 461 GKEYVFHKGQGEFEW 475
>gi|145342451|ref|XP_001416196.1| transcription factor IIa large subunit 3, TFIIA3, putative
[Ostreococcus lucimarinus CCE9901]
gi|144576421|gb|ABO94489.1| transcription factor IIa large subunit 3, TFIIA3, putative
[Ostreococcus lucimarinus CCE9901]
Length = 182
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 35/44 (79%)
Query: 361 TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 404
T +LVL+QF+KV RTK++WKCA +DG+M +N + +F KAT EF
Sbjct: 137 TSNLVLSQFEKVGRTKNKWKCAFRDGVMLLNGTEYVFGKATAEF 180
>gi|195112756|ref|XP_002000938.1| GI22255 [Drosophila mojavensis]
gi|193917532|gb|EDW16399.1| GI22255 [Drosophila mojavensis]
Length = 381
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 318 PLNSEDD--VTDEDSAEVFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 375
Query: 401 TGEFDF 406
G+ ++
Sbjct: 376 NGDAEW 381
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ IW K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVINNVRDAFLDEGVDEQVLQEMKQIWRNKLLASKAV 54
>gi|389741832|gb|EIM83020.1| transcription factor IIA alpha/beta subunit [Stereum hirsutum
FP-91666 SS1]
Length = 290
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEE--LNTQHLVLAQFDKVTRTKSRWKCALKDGI 387
Q AA+ DD+ ++ DD + + + EE L +V +DKV R K++WKC LK+G+
Sbjct: 216 QQPAAQADDEAINSDLDDSDSEGSEDPEEGGLGETDIVFCTYDKVARVKNKWKCVLKEGM 275
Query: 388 MHINNKDILFNKATG 402
+H+N KD LF K +G
Sbjct: 276 IHVNGKDYLFGKCSG 290
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ +Y VI+DVIS ++ +F G E VL +LQ WE K+I + V
Sbjct: 1 MSNKIVPAIYRAVIDDVISSIKSDFDEYGVSEEVLADLQQKWENKVIASHV 51
>gi|403217723|emb|CCK72216.1| hypothetical protein KNAG_0J01350 [Kazachstania naganishii CBS
8797]
Length = 265
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Query: 342 LNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG+ IN +D F KA
Sbjct: 201 LDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVATINRRDYTFQKA 258
Query: 401 TGEFDF 406
E ++
Sbjct: 259 QVEAEW 264
>gi|195390121|ref|XP_002053717.1| GJ24046 [Drosophila virilis]
gi|194151803|gb|EDW67237.1| GJ24046 [Drosophila virilis]
Length = 379
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 316 PLNSEDD--VTDEDSAEVFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 373
Query: 401 TGEFDF 406
G+ ++
Sbjct: 374 NGDAEW 379
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVIS VRD F++ G E VL E++ IW K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVISNVRDAFLDEGVDEQVLQEMKQIWRNKLLASKAV 54
>gi|281207897|gb|EFA82076.1| transcription factor IIA [Polysphondylium pallidum PN500]
Length = 339
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 362 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 404
+H VL Q++KVTR K++ KC KDG+MH+N +D LF+KA EF
Sbjct: 294 EHFVLCQYEKVTRVKNKRKCNFKDGVMHLNGRDSLFHKANAEF 336
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
VY +I+DVI +R EFVN G + ++ ELQ +WE +++Q+G +
Sbjct: 6 VYRYIIDDVIRNIRIEFVNEGLEDRIIAELQHMWESRLMQSGAV 49
>gi|449302913|gb|EMC98921.1| hypothetical protein BAUCODRAFT_385117 [Baudoinia compniacensis
UAMH 10762]
Length = 386
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 335 EDDDDEPLNENDDDELDDVDQG-EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNK 393
EDD+D ++ D DE + G EE + +L +DKV R K++WKC LKDG+M I+ K
Sbjct: 314 EDDEDAINSDLDSDEDPTGNIGDEEDDLGDTILCTYDKVQRVKNKWKCTLKDGVMSISGK 373
Query: 394 DILFNKATGEFDF 406
+ +F+K GEF++
Sbjct: 374 EWVFHKGMGEFEW 386
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVII 53
M G +Y ++IE+V++ +D+F +G SVL +L W K+ V +
Sbjct: 1 MTNQLVGEIYKKIIEEVVAGSKDQFEESGVSASVLEDLAKEWRTKLSARNVAV 53
>gi|115496566|ref|NP_001070039.1| TFIIA-alpha and beta-like factor [Danio rerio]
gi|115313627|gb|AAI24542.1| Zgc:154100 [Danio rerio]
gi|182891014|gb|AAI64474.1| Zgc:154100 protein [Danio rerio]
Length = 376
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 340 EPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 399
+PLN DD + + D E +T+++++ Q+DK+ R+K+RWK LKDG+M KD +F+K
Sbjct: 312 DPLNSGDD--VSEQDIPEIFDTENVIVCQYDKIHRSKNRWKFYLKDGVMCYGGKDYVFSK 369
Query: 400 ATGEFDF 406
A GE ++
Sbjct: 370 AVGEAEW 376
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y+ VIEDV+ VR+ F + G E VL L+ +WE K++Q+ +
Sbjct: 11 LYLSVIEDVLESVRELFQDEGVEERVLEHLRQLWESKVVQSKAV 54
>gi|407920741|gb|EKG13923.1| Transcription factor IIA alpha/beta subunit [Macrophomina
phaseolina MS6]
Length = 297
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 10/76 (13%)
Query: 331 NDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
N +D D+E + E DD+ G + +T ++ +DKV R K++WKC LKDG++
Sbjct: 232 NSDLDDSDEEQIQEGDDE-------GPQGDT---MICTYDKVQRVKNKWKCTLKDGVLST 281
Query: 391 NNKDILFNKATGEFDF 406
KD LF+KA GEF++
Sbjct: 282 GGKDYLFHKAQGEFEW 297
>gi|195053674|ref|XP_001993751.1| GH19494 [Drosophila grimshawi]
gi|193895621|gb|EDV94487.1| GH19494 [Drosophila grimshawi]
Length = 369
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D D E T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 306 PLNSEDD--VTDEDSAEVFETDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 363
Query: 401 TGEFDF 406
G+ ++
Sbjct: 364 NGDAEW 369
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ +W K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAV 54
>gi|255721121|ref|XP_002545495.1| predicted protein [Candida tropicalis MYA-3404]
gi|240135984|gb|EER35537.1| predicted protein [Candida tropicalis MYA-3404]
Length = 268
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+ L +DKV R KS+WKC+LK+GI +IN KD +FNKATGE ++
Sbjct: 225 QIALCLYDKVQRIKSKWKCSLKEGIANINGKDYVFNKATGECEW 268
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + +Y VI+DVI+ R +F N+G ES L EL+ +W+ K+ AGV
Sbjct: 1 MSNIESSKLYESVIDDVINDSRQDFENSGIDESTLQELKKLWQEKLTLAGV 51
>gi|365758296|gb|EHN00146.1| Toa1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 281
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 341 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 399
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D F K
Sbjct: 216 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQK 273
Query: 400 ATGEFDF 406
A E ++
Sbjct: 274 AQVEAEW 280
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 24/165 (14%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ + Y ++E V+++VR++F N G E L +L+ +W+ K+ ++ V T +
Sbjct: 1 MSNAEASRAYEIIVETVVNEVREDFENAGIDEQTLQDLKNVWQKKLTESKVT---TFSWD 57
Query: 61 QPAPGGPITPV-HDLN----VPYEGTEEY----ETPTAEILFPPTPLQTPIQTPLPGSTP 111
I+ V +DLN P T E+ E E L P + P
Sbjct: 58 NQFNETNISGVQNDLNFNLAAPNTNTTEFNIKEENAGNEGLVLP-------NVNANNNMP 110
Query: 112 LPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAK 156
G + +T G A+N+T N TG+ T AS+S N E K
Sbjct: 111 HAGGANVVTNT---GEANNATINTNTGAGTNVTRASES--NIEVK 150
>gi|326481996|gb|EGE06006.1| transcription factor TFIIA complex subunit Toa1 [Trichophyton
equinum CBS 127.97]
Length = 430
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 11/80 (13%)
Query: 338 DDEPLNENDDDELDDV-----------DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDG 386
DD P+ ++DD++ + +QGE+ ++L +DKV R KS+WKC LKDG
Sbjct: 350 DDYPVKKDDDEDAINSDLDDPDDLLDEEQGEDDAVGQVMLCTYDKVQRVKSKWKCVLKDG 409
Query: 387 IMHINNKDILFNKATGEFDF 406
I+ + K+ +F+K TGEF++
Sbjct: 410 ILTSDGKEYVFHKGTGEFEW 429
>gi|315043172|ref|XP_003170962.1| hypothetical protein MGYG_06953 [Arthroderma gypseum CBS 118893]
gi|311344751|gb|EFR03954.1| hypothetical protein MGYG_06953 [Arthroderma gypseum CBS 118893]
Length = 413
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%)
Query: 354 DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+QGE+ ++L +DKV R KS+WKC LKDGI+ + K+ +F+K TGEF++
Sbjct: 360 EQGEDDAVGQVMLCTYDKVQRVKSKWKCVLKDGILTSDGKEYVFHKGTGEFEW 412
>gi|401839362|gb|EJT42619.1| TOA1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 279
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 341 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 399
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D F K
Sbjct: 214 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQK 271
Query: 400 ATGEFDF 406
A E ++
Sbjct: 272 AQVEAEW 278
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + Y ++E V+++VR++F N G E L +L+ +W+ K+ ++ V
Sbjct: 1 MSNAEASRAYEIIVETVVNEVREDFENAGIDEQTLQDLKNVWQKKLTESKV 51
>gi|326473310|gb|EGD97319.1| transcription factor TFIIA complex subunit Toa1 [Trichophyton
tonsurans CBS 112818]
Length = 430
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 11/80 (13%)
Query: 338 DDEPLNENDDDELDDV-----------DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDG 386
DD P+ ++DD++ + +QGE+ ++L +DKV R KS+WKC LKDG
Sbjct: 350 DDYPVKKDDDEDAINSDLDDPDDLLDEEQGEDDAVGQVMLCTYDKVQRVKSKWKCVLKDG 409
Query: 387 IMHINNKDILFNKATGEFDF 406
I+ + K+ +F+K TGEF++
Sbjct: 410 ILTSDGKEYVFHKGTGEFEW 429
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ G V+ RVI++V + +F +G + L EL+ W++K+ GV P
Sbjct: 1 MSNQLVGTVFDRVIQEVCDSSQIDFEESGVDQHTLEELRKGWQLKLSSLGV----AHFPW 56
Query: 61 QPAPGGPIT 69
PAP P++
Sbjct: 57 DPAPQPPVS 65
>gi|323307218|gb|EGA60501.1| Toa1p [Saccharomyces cerevisiae FostersO]
gi|349581354|dbj|GAA26512.1| K7_Toa1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 286
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 341 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 399
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D F K
Sbjct: 221 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQK 278
Query: 400 ATGEFDF 406
A E ++
Sbjct: 279 AQVEAEW 285
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + VY ++E V+++VR++F N G E L +L+ IW+ K+ + V
Sbjct: 1 MSNAEASRVYEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQKKLTETKV 51
>gi|6324768|ref|NP_014837.1| Toa1p [Saccharomyces cerevisiae S288c]
gi|418108|sp|P32773.1|TOA1_YEAST RecName: Full=Transcription initiation factor IIA large subunit;
Short=TFIIA large subunit; AltName: Full=TFIIA 32 kDa
subunit
gi|73535265|pdb|1RM1|C Chain C, Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex
gi|172893|gb|AAA19654.1| transcription factor IIA [Saccharomyces cerevisiae]
gi|1420463|emb|CAA99407.1| TOA1 [Saccharomyces cerevisiae]
gi|151945287|gb|EDN63530.1| transcription factor IIA subunit alpha [Saccharomyces cerevisiae
YJM789]
gi|190407510|gb|EDV10777.1| transcription initiation factor IIA large chain [Saccharomyces
cerevisiae RM11-1a]
gi|207341051|gb|EDZ69216.1| YOR194Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256269564|gb|EEU04846.1| Toa1p [Saccharomyces cerevisiae JAY291]
gi|259149678|emb|CAY86482.1| Toa1p [Saccharomyces cerevisiae EC1118]
gi|285815076|tpg|DAA10969.1| TPA: Toa1p [Saccharomyces cerevisiae S288c]
gi|392296523|gb|EIW07625.1| Toa1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 286
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 341 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 399
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D F K
Sbjct: 221 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQK 278
Query: 400 ATGEFDF 406
A E ++
Sbjct: 279 AQVEAEW 285
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + VY ++E V+++VR++F N G E L +L+ IW+ K+ + V
Sbjct: 1 MSNAEASRVYEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQKKLTETKV 51
>gi|365762877|gb|EHN04409.1| Toa1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 286
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 341 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 399
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D F K
Sbjct: 221 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQK 278
Query: 400 ATGEFDF 406
A E ++
Sbjct: 279 AQVEAEW 285
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + VY ++E V+++VR++F N G E L +L+ IW+ K+ + V
Sbjct: 1 MSNAEASRVYEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQKKLTETKV 51
>gi|51013897|gb|AAT93242.1| YOR194C [Saccharomyces cerevisiae]
Length = 286
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 341 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 399
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D F K
Sbjct: 221 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQK 278
Query: 400 ATGEFDF 406
A E ++
Sbjct: 279 AQVEAEW 285
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + VY +++ V+++VR++F N G E L +L+ IW+ K+ + V
Sbjct: 1 MSNAEASRVYEIIVQSVVNEVREDFENAGIDEQTLQDLKNIWQKKLTETKV 51
>gi|408395922|gb|EKJ75093.1| hypothetical protein FPSE_04713 [Fusarium pseudograminearum CS3096]
Length = 410
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 368 IMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 410
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ A G VY +I++V++ R +F +G ESVL EL+ W+ K+ Q V
Sbjct: 1 MSNQAVGSVYKAIIDEVVNSSRVDFEESGVEESVLEELRQGWQQKLTQLDV 51
>gi|302927465|ref|XP_003054504.1| hypothetical protein NECHADRAFT_75297 [Nectria haematococca mpVI
77-13-4]
gi|256735445|gb|EEU48791.1| hypothetical protein NECHADRAFT_75297 [Nectria haematococca mpVI
77-13-4]
Length = 395
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 36/44 (81%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 352 NIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 395
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ A G VY +I++VI+ R +F +G ESVL EL+ W+ K+ Q V
Sbjct: 1 MSNQAVGNVYQTIIDEVINSSRVDFEESGIEESVLEELRQGWQRKLTQLDV 51
>gi|401623541|gb|EJS41637.1| toa1p [Saccharomyces arboricola H-6]
Length = 281
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 341 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 399
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D F K
Sbjct: 216 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQK 273
Query: 400 ATGEFDF 406
A E ++
Sbjct: 274 AQVEAEW 280
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ S Y ++E V+++VR++F N G E L +L+ IW+ K+ + V
Sbjct: 1 MSNSEASRAYEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQKKLTETKV 51
>gi|327295122|ref|XP_003232256.1| transcription factor TFIIA complex subunit Toa1 [Trichophyton
rubrum CBS 118892]
gi|326465428|gb|EGD90881.1| transcription factor TFIIA complex subunit Toa1 [Trichophyton
rubrum CBS 118892]
Length = 423
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 11/80 (13%)
Query: 338 DDEPLNENDDDEL-----------DDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDG 386
DD P+ ++DD++ D DQGE+ ++L +DKV R KS+WKC LKDG
Sbjct: 343 DDYPVKKDDDEDAINSDLDDPDDLLDEDQGEDDAVGQVMLCTYDKVQRVKSKWKCVLKDG 402
Query: 387 IMHINNKDILFNKATGEFDF 406
I+ + K+ +F+K TGEF++
Sbjct: 403 ILTSDGKEYVFHKGTGEFEW 422
>gi|46107550|ref|XP_380834.1| hypothetical protein FG00658.1 [Gibberella zeae PH-1]
Length = 413
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 371 IMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 413
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ A G VY +I++V++ R +F +G ESVL EL+ W+ K+ Q V
Sbjct: 1 MSNQAVGGVYKAIIDEVVNSSRVDFEESGVEESVLEELRQGWQQKLTQLDV 51
>gi|195574328|ref|XP_002105141.1| GD21332 [Drosophila simulans]
gi|194201068|gb|EDX14644.1| GD21332 [Drosophila simulans]
Length = 115
Score = 62.8 bits (151), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 52 PLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 109
Query: 401 TGEFDF 406
G+ ++
Sbjct: 110 NGDAEW 115
>gi|134055805|emb|CAK37327.1| unnamed protein product [Aspergillus niger]
Length = 362
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 336 DDDDEPLNENDDDELDDV---DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINN 392
D+DDE +D D+ DD+ D E ++L +DKV R K++WKC LKDGI+
Sbjct: 289 DEDDEDAINSDLDDPDDLVAEDHDAEDAVGQVMLCTYDKVQRVKNKWKCTLKDGILTTGG 348
Query: 393 KDILFNKATGEFDF 406
K+ +F+K GEF++
Sbjct: 349 KEYVFHKGQGEFEW 362
>gi|320593678|gb|EFX06087.1| transcription factor tfiia complex subunit [Grosmannia clavigera
kw1407]
Length = 429
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 387 IMLCVYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 429
>gi|402083854|gb|EJT78872.1| hypothetical protein GGTG_03966 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 403
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 34/42 (80%)
Query: 365 VLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+L +DKV R K++WKC LKDGI+ +N K+ +F+KATGE+++
Sbjct: 362 MLCLYDKVQRVKNKWKCTLKDGILTVNGKEYVFHKATGEYEW 403
>gi|410082483|ref|XP_003958820.1| hypothetical protein KAFR_0H02760 [Kazachstania africana CBS 2517]
gi|372465409|emb|CCF59685.1| hypothetical protein KAFR_0H02760 [Kazachstania africana CBS 2517]
Length = 268
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 48/66 (72%), Gaps = 3/66 (4%)
Query: 342 LNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
L+++DDD L + +GE+ ++L+L ++KVTRTK+RWKC+LKDGI IN+KD F KA
Sbjct: 204 LDDSDDDYL--ISEGEDDGPDENLMLCLYEKVTRTKARWKCSLKDGIATINHKDYTFQKA 261
Query: 401 TGEFDF 406
E ++
Sbjct: 262 QVEAEW 267
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ VY ++E VI++VR++F N G E L +L+ W++K+ + V
Sbjct: 1 MSNREASKVYESIVESVINEVREDFENAGIDEQTLQDLKRNWKLKLSETKV 51
>gi|326914931|ref|XP_003203776.1| PREDICTED: TFIIA-alpha and beta-like factor-like [Meleagris
gallopavo]
Length = 493
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 51/77 (66%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN +DD + D+D + +T ++++ Q++K+ R+K++WK LKDG+M
Sbjct: 422 QTDIVEED---PLNSDDD--VSDLDIADLFDTNNVIVCQYEKIHRSKNKWKFFLKDGVMS 476
Query: 390 INNKDILFNKATGEFDF 406
+ KD +F KA G+ ++
Sbjct: 477 FDGKDYVFAKAVGDAEW 493
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VI+DVI ++D F G + VL L+ +WE K++Q+ K +
Sbjct: 10 LYKSVIDDVIESIQDLFXEEGVDKQVLRNLKELWETKVMQSKA---TEGLFKHSHRSSHL 66
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFPPTP-----LQTPIQTPLPGST-PLPGSTPLPGST 122
T L VP+ + PTA ++ P + + P G+T LP S P
Sbjct: 67 T----LQVPHNFHHVLQAPTASLVIPAGGGFQHFMAADLGAPQKGATLTLPSSVAYPIHV 122
Query: 123 P 123
P
Sbjct: 123 P 123
>gi|365986957|ref|XP_003670310.1| hypothetical protein NDAI_0E02500 [Naumovozyma dairenensis CBS 421]
gi|343769080|emb|CCD25067.1| hypothetical protein NDAI_0E02500 [Naumovozyma dairenensis CBS 421]
Length = 272
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 52/74 (70%), Gaps = 6/74 (8%)
Query: 337 DDDE---PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINN 392
D+DE L+++DDD L + +GE+ ++L+L +DKVTRTK+RWKC+LKDGI+ I +
Sbjct: 200 DNDEVGSELDDSDDDYL--ISEGEDDGPDENLMLCLYDKVTRTKARWKCSLKDGIVTIAH 257
Query: 393 KDILFNKATGEFDF 406
KD F KA E ++
Sbjct: 258 KDYSFQKAQVEAEW 271
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ S VY ++ VI++VR++F N G E L +L+ +W+ K+ + V
Sbjct: 1 MSNSEASKVYELIVSSVINEVREDFENAGIDEQTLQDLKRVWQSKLTETKV 51
>gi|302679224|ref|XP_003029294.1| hypothetical protein SCHCODRAFT_111312 [Schizophyllum commune H4-8]
gi|300102984|gb|EFI94391.1| hypothetical protein SCHCODRAFT_111312, partial [Schizophyllum
commune H4-8]
Length = 358
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 337 DDDEPLNENDDDELDDVDQ-GEELNTQ-----HLVLAQFDKVTRTKSRWKCALKDGIMHI 390
+DDE +N + DD D +Q GEE T +V +DKV R K++WKC LKDG++H+
Sbjct: 230 EDDEEINSDLDDSDSDGEQNGEEQATSGAADGDIVFCTYDKVQRVKNKWKCVLKDGVIHM 289
Query: 391 NNKDILFNKATG 402
N +D LF+K TG
Sbjct: 290 NGRDYLFSKCTG 301
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
+Y VI+DVI+ ++ EF G + VL++LQ WE K+I + V
Sbjct: 32 IYRTVIDDVIANIKPEFDEYGVTQEVLDQLQDKWEQKVINSRV 74
>gi|367004725|ref|XP_003687095.1| hypothetical protein TPHA_0I01550 [Tetrapisispora phaffii CBS 4417]
gi|357525398|emb|CCE64661.1| hypothetical protein TPHA_0I01550 [Tetrapisispora phaffii CBS 4417]
Length = 258
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Query: 342 LNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
L+++DDD L + +GE+ ++L+L ++KVTRTK+RWKC+LKDGI IN +D F KA
Sbjct: 194 LDDSDDDYL--ISEGEDEGPDENLLLCLYEKVTRTKARWKCSLKDGIATINRRDYTFQKA 251
Query: 401 TGEFDF 406
E ++
Sbjct: 252 HVEAEW 257
>gi|296808367|ref|XP_002844522.1| transcription initiation factor TFIIA large subunit [Arthroderma
otae CBS 113480]
gi|238844005|gb|EEQ33667.1| transcription initiation factor TFIIA large subunit [Arthroderma
otae CBS 113480]
Length = 415
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 38/53 (71%)
Query: 354 DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+QGE+ ++L +DKV R KS+WKC LKDGI+ + ++ +F+K TGEF++
Sbjct: 362 EQGEDDAVGQVMLCTYDKVQRVKSKWKCVLKDGILTSDGREYVFHKGTGEFEW 414
Score = 37.7 bits (86), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ GMV+ RVI++V + +F +G + L EL+ W+ K+ GV
Sbjct: 1 MSNQLVGMVFDRVIQEVCDSSQIDFEESGVDQHALEELRKGWQSKLSSLGV 51
>gi|300676802|gb|ADK26678.1| general transcription factor IIA, 1-like [Zonotrichia albicollis]
Length = 1191
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD + + D + +T ++++ Q++K+ RTK++WK LKDG+M
Sbjct: 1120 QIDIVEED---PLNSGDD--VSEQDIADLFDTDNVIVCQYEKIHRTKNKWKFYLKDGVMS 1174
Query: 390 INNKDILFNKATGEFDF 406
I KD +F KATG+ ++
Sbjct: 1175 IEGKDHVFAKATGDAEW 1191
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
+Y +IEDVI VR+ F G E VL +L+ +WE K+ Q+
Sbjct: 714 LYQSIIEDVIEGVRELFAEEGVEEQVLKDLKQLWETKVTQS 754
>gi|198414342|ref|XP_002131478.1| PREDICTED: similar to general transcription factor IIA, 1 isoform 4
[Ciona intestinalis]
Length = 288
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 347 DDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
DD DD D E +T ++V+ Q+DK+ R K RWK LK GIM++N KD++F KATGE ++
Sbjct: 230 DDGSDD-DPVELFDTDNVVVCQYDKIHRAKCRWKFNLKVGIMNLNGKDLVFQKATGEAEW 288
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 4 SATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
++ +Y VIEDVI+ +R+ F+++G E VL EL+ WE K+ Q+ +
Sbjct: 9 NSVAKLYQTVIEDVINNIREAFLDDGVDEHVLQELKQTWEQKLAQSKAV 57
>gi|345317847|ref|XP_001513745.2| PREDICTED: TFIIA-alpha and beta-like factor-like [Ornithorhynchus
anatinus]
Length = 384
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD DV + T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 313 QLDVVEED---PLNSGDDVSEQDVP--DLFETDNVIVCQYDKIHRSKNKWKFYLKDGVMC 367
Query: 390 INNKDILFNKATGEFDF 406
KD +F +ATG+ ++
Sbjct: 368 FGGKDYVFARATGDAEW 384
>gi|241690302|ref|XP_002411755.1| tfiia large subunit, putative [Ixodes scapularis]
gi|215504590|gb|EEC14084.1| tfiia large subunit, putative [Ixodes scapularis]
Length = 303
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 345 NDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 404
N DD++ D + E ++V+ Q+DK++R+++RWK KDGIM++ KD +F KA G+
Sbjct: 242 NSDDDVSDEEATENFEIDNVVVCQYDKISRSRNRWKFHFKDGIMNLQGKDYVFQKAVGDA 301
Query: 405 DF 406
++
Sbjct: 302 EW 303
>gi|198414340|ref|XP_002131489.1| PREDICTED: similar to general transcription factor IIA, 1 isoform 5
[Ciona intestinalis]
Length = 299
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 347 DDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
DD DD D E +T ++V+ Q+DK+ R K RWK LK GIM++N KD++F KATGE ++
Sbjct: 241 DDGSDD-DPVELFDTDNVVVCQYDKIHRAKCRWKFNLKVGIMNLNGKDLVFQKATGEAEW 299
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 4 SATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
++ +Y VIEDVI+ +R+ F+++G E VL EL+ WE K+ Q+ +
Sbjct: 9 NSVAKLYQTVIEDVINNIREAFLDDGVDEHVLQELKQTWEQKLAQSKAV 57
>gi|198414338|ref|XP_002131456.1| PREDICTED: similar to general transcription factor IIA, 1 isoform 2
[Ciona intestinalis]
Length = 299
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 347 DDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
DD DD D E +T ++V+ Q+DK+ R K RWK LK GIM++N KD++F KATGE ++
Sbjct: 241 DDGSDD-DPVELFDTDNVVVCQYDKIHRAKCRWKFNLKVGIMNLNGKDLVFQKATGEAEW 299
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 4 SATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
++ +Y VIEDVI+ +R+ F+++G E VL EL+ WE K+ Q+ +
Sbjct: 9 NSVAKLYQTVIEDVINNIREAFLDDGVDEHVLQELKQTWEQKLAQSKAV 57
>gi|198414336|ref|XP_002131518.1| PREDICTED: similar to general transcription factor IIA, 1 isoform 6
[Ciona intestinalis]
Length = 310
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 347 DDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
DD DD D E +T ++V+ Q+DK+ R K RWK LK GIM++N KD++F KATGE ++
Sbjct: 252 DDGSDD-DPVELFDTDNVVVCQYDKIHRAKCRWKFNLKVGIMNLNGKDLVFQKATGEAEW 310
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 4 SATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
++ +Y VIEDVI+ +R+ F+++G E VL EL+ WE K+ Q+ +
Sbjct: 9 NSVAKLYQTVIEDVINNIREAFLDDGVDEHVLQELKQTWEQKLAQSKAV 57
>gi|198414332|ref|XP_002131438.1| PREDICTED: similar to general transcription factor IIA, 1 isoform 1
[Ciona intestinalis]
Length = 332
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 357 EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
E +T ++V+ Q+DK+ R K RWK LK GIM++N KD++F KATGE ++
Sbjct: 283 ELFDTDNVVVCQYDKIHRAKCRWKFNLKVGIMNLNGKDLVFQKATGEAEW 332
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 4 SATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
++ +Y VIEDVI+ +R+ F+++G E VL EL+ WE K+ Q+ +
Sbjct: 9 NSVAKLYQTVIEDVINNIREAFLDDGVDEHVLQELKQTWEQKLAQSKAV 57
>gi|156847136|ref|XP_001646453.1| hypothetical protein Kpol_1048p25 [Vanderwaltozyma polyspora DSM
70294]
gi|156117130|gb|EDO18595.1| hypothetical protein Kpol_1048p25 [Vanderwaltozyma polyspora DSM
70294]
Length = 298
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 51/74 (68%), Gaps = 6/74 (8%)
Query: 337 DDDE---PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINN 392
D+DE L+++DDD L + +GE+ ++L+L ++KVTRTK+RWKC+LKDG+ IN
Sbjct: 226 DNDEVGSELDDSDDDYL--ISEGEDDGPDENLLLCLYEKVTRTKARWKCSLKDGVATINR 283
Query: 393 KDILFNKATGEFDF 406
KD F KA E ++
Sbjct: 284 KDYTFQKANVEAEW 297
>gi|198414334|ref|XP_002131466.1| PREDICTED: similar to general transcription factor IIA, 1 isoform 3
[Ciona intestinalis]
Length = 321
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 347 DDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
DD DD D E +T ++V+ Q+DK+ R K RWK LK GIM++N KD++F KATGE ++
Sbjct: 263 DDGSDD-DPVELFDTDNVVVCQYDKIHRAKCRWKFNLKVGIMNLNGKDLVFQKATGEAEW 321
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 4 SATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
++ +Y VIEDVI+ +R+ F+++G E VL EL+ WE K+ Q+ +
Sbjct: 9 NSVAKLYQTVIEDVINNIREAFLDDGVDEHVLQELKQTWEQKLAQSKAV 57
>gi|353238603|emb|CCA70544.1| related to TOA1-transcription factor TFIIA-L [Piriformospora indica
DSM 11827]
Length = 477
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+ +DKVTR K+RWK +DG++H N KD LF + TGEFD+
Sbjct: 435 VTYCTYDKVTRVKTRWKVVFRDGMVHANGKDYLFGRCTGEFDW 477
>gi|395323340|gb|EJF55815.1| TFIIA-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 408
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATG 402
+V +DKV R K++WKC LKDG++H+N KD LF K TG
Sbjct: 286 IVFCTYDKVARVKNKWKCVLKDGMIHVNGKDYLFAKCTG 324
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI-IDRTSAPKQPAPGGP 67
+Y VI+DVI+ ++ EF + G E VL ELQ WE K+I + V + + P PAP
Sbjct: 21 IYRAVIDDVIANIKPEFDDFGVSEEVLAELQSKWEAKVIASHVADFEPPAPPPAPAPAHT 80
Query: 68 ITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGT 127
P H ++ G + P PP P+Q Q P + P+ G L G
Sbjct: 81 AYPPHPMHTMQHG---HYPPHTAYAPPPHPMQVATQ-------PHVKTEPMDGRYVLSGP 130
Query: 128 ADNSTYNIPTGS 139
+ Y IPT S
Sbjct: 131 QSMAQYGIPTLS 142
>gi|58865842|ref|NP_001012136.1| TFIIA-alpha and beta-like factor [Rattus norvegicus]
gi|51980533|gb|AAH82104.1| General transcription factor IIA, 1-like [Rattus norvegicus]
gi|149050446|gb|EDM02619.1| rCG61545 [Rattus norvegicus]
Length = 468
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q DA E+D PLN DD + + D + +T ++++ Q+DK+ R+K+RWK LKDG+M
Sbjct: 397 QIDALEED---PLNSGDD--VSEQDAPDLFDTDNVIVCQYDKIHRSKNRWKFYLKDGVMC 451
Query: 390 INNKDILFNKATGEFDF 406
+D +F KA GE ++
Sbjct: 452 FGGRDYVFAKAIGEAEW 468
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+
Sbjct: 10 LYRSVIEDVIEGVRDLFAEEGIEEQVLKDLKKLWETKVLQS 50
>gi|50291165|ref|XP_448015.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527326|emb|CAG60966.1| unnamed protein product [Candida glabrata]
Length = 249
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 342 LNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
L+++DD+ L + +GE+ ++++L +DKVTRTK+RWKC LKDGI +N KD F KA
Sbjct: 185 LDDSDDNYL--ISEGEDEGPDENIILCLYDKVTRTKARWKCTLKDGIATVNRKDYSFQKA 242
Query: 401 TGEFDF 406
E ++
Sbjct: 243 QVEAEW 248
>gi|344231344|gb|EGV63226.1| hypothetical protein CANTEDRAFT_123183 [Candida tenuis ATCC 10573]
gi|344231345|gb|EGV63227.1| hypothetical protein CANTEDRAFT_123183 [Candida tenuis ATCC 10573]
Length = 269
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
H++L +DKV R K++WKC+LK+GI IN +D +F KATGE ++
Sbjct: 226 HIMLCLYDKVQRIKNKWKCSLKEGIASINGRDYVFQKATGESEW 269
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ +Y +IE+VI+ R +F N+G E+ L EL+ IW+ K+ Q+ V
Sbjct: 1 MSNIEASKLYEAIIEEVINDSRQDFENSGVDENTLQELKKIWQEKLTQSQV 51
>gi|320038931|gb|EFW20866.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 363
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R KS+WKC LKDGI+ K+ +F+K TGEF++
Sbjct: 319 QVMLCTYDKVQRVKSKWKCTLKDGILTTGGKEYVFHKGTGEFEW 362
>gi|308503849|ref|XP_003114108.1| CRE-PQN-51 protein [Caenorhabditis remanei]
gi|308261493|gb|EFP05446.1| CRE-PQN-51 protein [Caenorhabditis remanei]
Length = 357
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 359 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+ +++V+ QF+KV R +++WK LKDGIMHI+ KD F K TGE ++
Sbjct: 310 FDAENVVMCQFEKVNRARTKWKFQLKDGIMHIDKKDYCFQKCTGEAEW 357
>gi|300676900|gb|ADK26772.1| general transcription factor IIA, 1-like [Zonotrichia albicollis]
Length = 1191
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD + + D + T ++++ Q++K+ RTK++WK LKDG+M
Sbjct: 1120 QIDIVEED---PLNSGDD--VSEQDIADLFGTDNVIVCQYEKIHRTKNKWKFYLKDGVMS 1174
Query: 390 INNKDILFNKATGEFDF 406
I KD +F KATG+ ++
Sbjct: 1175 IEGKDHVFAKATGDAEW 1191
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
+Y +IEDVI VR+ F G E VL +L+ +WE K+ Q+
Sbjct: 714 LYKSIIEDVIEGVRELFAEEGVEEQVLKDLKQLWETKVTQS 754
>gi|358332278|dbj|GAA50950.1| transcription initiation factor TFIIA large subunit [Clonorchis
sinensis]
Length = 588
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D + + ++V+ Q+DK+ R+++RW+ LKDGIM IN +D +F KA
Sbjct: 525 PLNSEDD--VSDEEPEVLFESDNVVVCQYDKIHRSRNRWRFHLKDGIMAINGRDHVFQKA 582
Query: 401 TGEFDF 406
GE ++
Sbjct: 583 VGEAEW 588
>gi|303317782|ref|XP_003068893.1| Transcription factor IIA, alpha/beta subunit family protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240108574|gb|EER26748.1| Transcription factor IIA, alpha/beta subunit family protein
[Coccidioides posadasii C735 delta SOWgp]
Length = 389
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R KS+WKC LKDGI+ K+ +F+K TGEF++
Sbjct: 345 QVMLCTYDKVQRVKSKWKCTLKDGILTTGGKEYVFHKGTGEFEW 388
>gi|410901529|ref|XP_003964248.1| PREDICTED: stonin-1-like [Takifugu rubripes]
Length = 1037
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 331 NDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
++ A +D++PLN DD + + D + +T ++++ Q+DK+ R+K+RWK LKDG+M
Sbjct: 964 DELASVEDEDPLNSGDD--VIEQDIPDLFDTDNVIVCQYDKIHRSKNRWKFHLKDGVMCH 1021
Query: 391 NNKDILFNKATGEFDF 406
+D +F+KA GE ++
Sbjct: 1022 RGRDYVFSKAVGEAEW 1037
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 5 ATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPA 63
VY+ +I+DVI +R+ F++ G + +++ L+ +WE KM+Q+ I D PA
Sbjct: 587 CQAKVYLSIIDDVIESIRELFLDEGLEDRLVDHLRHLWESKMMQSRAIEDLRKGIVNPA 645
>gi|1633309|pdb|1YTF|C Chain C, Yeast TfiiaTBPDNA COMPLEX
gi|38492532|pdb|1NH2|C Chain C, Crystal Structure Of A Yeast TfiiaTBPDNA COMPLEX
Length = 79
Score = 60.8 bits (146), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 336 DDDDEPLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 394
D+ L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D
Sbjct: 9 DEVGSELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRND 66
Query: 395 ILFNKATGEFDF 406
F KA E ++
Sbjct: 67 YTFQKAQVEAEW 78
>gi|119186417|ref|XP_001243815.1| hypothetical protein CIMG_03256 [Coccidioides immitis RS]
gi|392870531|gb|EAS32339.2| hypothetical protein CIMG_03256 [Coccidioides immitis RS]
Length = 389
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R KS+WKC LKDGI+ K+ +F+K TGEF++
Sbjct: 345 QVMLCTYDKVQRVKSKWKCTLKDGILTTGGKEYVFHKGTGEFEW 388
>gi|67517071|ref|XP_658420.1| hypothetical protein AN0816.2 [Aspergillus nidulans FGSC A4]
gi|40746490|gb|EAA65646.1| hypothetical protein AN0816.2 [Aspergillus nidulans FGSC A4]
gi|259488901|tpe|CBF88727.1| TPA: transcription factor TFIIA complex subunit Toa1, putative
(AFU_orthologue; AFUA_1G14740) [Aspergillus nidulans
FGSC A4]
Length = 419
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 8/70 (11%)
Query: 337 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 396
DD + L DD++ D V Q ++L +DKV R K++WKC LKDGI+ K+ +
Sbjct: 358 DDPDDLVAQDDEDDDAVGQ--------VMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYV 409
Query: 397 FNKATGEFDF 406
F+K GEF++
Sbjct: 410 FHKGQGEFEW 419
>gi|341886698|gb|EGT42633.1| CBN-PQN-51 protein [Caenorhabditis brenneri]
Length = 353
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++V+ QF+KV R +++WK LKDGIMHI+ KD F K TGE ++
Sbjct: 310 NIVMCQFEKVNRARTKWKFQLKDGIMHIDKKDYCFQKCTGEAEW 353
>gi|388580000|gb|EIM20318.1| TFIIA-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 175
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+VL +DKV R K++W+ LKDGI+ INNKD LF+K +GEF++
Sbjct: 133 IVLCLYDKVQRVKNKWRMQLKDGIISINNKDYLFSKCSGEFEW 175
>gi|363755108|ref|XP_003647769.1| hypothetical protein Ecym_7100 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891805|gb|AET40952.1| hypothetical protein Ecym_7100 [Eremothecium cymbalariae
DBVPG#7215]
Length = 238
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 321 QASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWK 380
QA A++ ++ D DD DDE + + E N +++L ++KV R K++WK
Sbjct: 159 QAKKSALLETDEINSDLDDT------DDEYVNFGEEENGNDVNIMLCLYEKVLRVKNKWK 212
Query: 381 CALKDGIMHINNKDILFNKATGEFDF 406
C LKDGI INNKD F KA GE ++
Sbjct: 213 CNLKDGIATINNKDYAFQKAQGESEW 238
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ VY V+E VI++VR +F N G E L +L+ IW+ K+ ++ V
Sbjct: 1 MSNIEAAKVYEEVVEGVINEVRQDFENAGIDEQTLQDLRRIWQSKLSESRV 51
>gi|336464804|gb|EGO53044.1| hypothetical protein NEUTE1DRAFT_91976 [Neurospora tetrasperma FGSC
2508]
Length = 408
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 34/43 (79%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R K++WKC LKDG++ +N K+ +F+KA GE+++
Sbjct: 366 IMLCLYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKANGEYEW 408
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ +A G VY +I +VI+ VR +F NG +SVL EL+ W+ K+ Q ++ P
Sbjct: 1 MSNAAVGTVYEHIINEVINAVRVDFEENGVDDSVLEELKKGWQHKLSQ----LNIAQFPW 56
Query: 61 QPAPGGP------ITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTP-LPGSTP 111
P P P +N T++ PTA QT Q+P LPG P
Sbjct: 57 DPKPEAPPPAQATQNTSSAVNAQAAATQQ---PTANYTQSTLSPQTAAQSPSLPGGQP 111
>gi|85116223|ref|XP_965018.1| hypothetical protein NCU02615 [Neurospora crassa OR74A]
gi|28926818|gb|EAA35782.1| predicted protein [Neurospora crassa OR74A]
gi|38567155|emb|CAE76449.1| related to transcription factor TFIIA-L [Neurospora crassa]
Length = 421
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 34/43 (79%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R K++WKC LKDG++ +N K+ +F+KA GE+++
Sbjct: 379 IMLCLYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKANGEYEW 421
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ +A G VY +I +VI+ VR +F NG +SVL EL+ W+ K+ Q ++ P
Sbjct: 1 MSNAAVGTVYEHIINEVINAVRVDFEENGVDDSVLEELKKGWQHKLSQ----LNIAQFPW 56
Query: 61 QPAPGGP------ITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTP-LPGSTP 111
P P P +N T++ PTA QT Q+P LPG P
Sbjct: 57 DPKPEAPPPAQATQNTSSAVNAQAAATQQ---PTANYTQSTLSPQTAAQSPSLPGGQP 111
>gi|350296905|gb|EGZ77882.1| transcription factor IIA, alpha/beta subunit [Neurospora
tetrasperma FGSC 2509]
Length = 422
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 34/43 (79%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R K++WKC LKDG++ +N K+ +F+KA GE+++
Sbjct: 380 IMLCLYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKANGEYEW 422
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ +A G VY +I +VI+ VR +F NG +SVL EL+ W+ K+ Q ++ P
Sbjct: 1 MSNAAVGTVYEHIINEVINAVRVDFEENGVDDSVLEELKKGWQHKLSQ----LNIAQFPW 56
Query: 61 QPAPGGP------ITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTP-LPGSTP 111
P P P +N T++ PTA QT Q+P LPG P
Sbjct: 57 DPKPEAPPPAQATQNTSSAVNAQAAATQQ---PTANYTQSTLSPQTAAQSPSLPGGQP 111
>gi|17562510|ref|NP_504355.1| Protein PQN-51 [Caenorhabditis elegans]
gi|351057796|emb|CCD64397.1| Protein PQN-51 [Caenorhabditis elegans]
Length = 354
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+V+ QF+KV R +++WK LKDGIMHI+ KD F K TGE ++
Sbjct: 312 VVMCQFEKVNRARTKWKFQLKDGIMHIDKKDYCFQKCTGEAEW 354
>gi|268556742|ref|XP_002636360.1| C. briggsae CBR-PQN-51 protein [Caenorhabditis briggsae]
Length = 353
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+V+ QF+KV R +++WK LKDGIMHI+ KD F K TGE ++
Sbjct: 311 VVMCQFEKVNRARTKWKFQLKDGIMHIDKKDYCFQKCTGEAEW 353
>gi|358059611|dbj|GAA94602.1| hypothetical protein E5Q_01254 [Mixia osmundae IAM 14324]
Length = 217
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
LV+A +DKV R K++WK LKDGIM IN KD LF++ GE ++
Sbjct: 175 LVIALYDKVQRVKNKWKIVLKDGIMSINGKDYLFSRCNGELEW 217
>gi|388856850|emb|CCF49637.1| related to TOA1-transcription factor TFIIA-L [Ustilago hordei]
Length = 214
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+VL +DKV R K++WKC LKDG+ I+ +D LF K GEF++
Sbjct: 172 MVLCLYDKVQRVKNKWKCVLKDGVASIDGRDYLFAKCNGEFEW 214
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 15/141 (10%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ VY +I+DVI+ VR +F G + VL ELQ WE K++ V A
Sbjct: 1 MSNKVVSQVYRSIIDDVINNVRQDFEEMGIEKEVLEELQRSWEAKIVATQV------AEF 54
Query: 61 QPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLP- 119
+ AP P T + + + P E+ + G+ P
Sbjct: 55 EGAPALPPTKSR--------SSKKQEPKTEVKAEDGNRTNGQSSSSNGADQHRSKVPRAD 106
Query: 120 GSTPLPGTADNSTYNIPTGSS 140
GST + G AD+ + S+
Sbjct: 107 GSTDVAGAADSGAQDAAAAST 127
>gi|345561295|gb|EGX44391.1| hypothetical protein AOL_s00193g119 [Arthrobotrys oligospora ATCC
24927]
Length = 320
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 35/44 (79%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV RTK++WKC L++G++ +N K+ +F KATGE+++
Sbjct: 277 QIMLCMYDKVQRTKNKWKCWLRNGVLTVNGKEYVFGKATGEYEW 320
>gi|336262854|ref|XP_003346209.1| hypothetical protein SMAC_05746 [Sordaria macrospora k-hell]
gi|380093538|emb|CCC08501.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 394
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 34/43 (79%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R K++WKC LKDG++ +N K+ +F+KA GE+++
Sbjct: 352 IMLCLYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKANGEYEW 394
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + G VY +I +VI+ VR +F NG +SVL EL+ W+ K+ Q V
Sbjct: 1 MSNNTVGTVYEHIINEVINAVRVDFEENGVDDSVLEELKKGWQHKLSQLNV 51
>gi|453086494|gb|EMF14536.1| transcription factor IIA, alpha/beta subunit [Mycosphaerella
populorum SO2202]
Length = 423
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 32/42 (76%)
Query: 365 VLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+L +DKV R K++WKC LKDG+M ++ K+ +F+K GEF++
Sbjct: 382 ILCTYDKVQRVKNKWKCTLKDGVMSVSGKEWVFHKGMGEFEW 423
>gi|354474742|ref|XP_003499589.1| PREDICTED: TFIIA-alpha and beta-like factor isoform 2 [Cricetulus
griseus]
Length = 442
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K+RWK LKDG+M
Sbjct: 371 QIDTMEED---PLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNRWKFYLKDGVMC 425
Query: 390 INNKDILFNKATGEFDF 406
+D +F KA GE ++
Sbjct: 426 FGGRDYVFAKAIGEAEW 442
>gi|354474740|ref|XP_003499588.1| PREDICTED: TFIIA-alpha and beta-like factor isoform 1 [Cricetulus
griseus]
Length = 476
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K+RWK LKDG+M
Sbjct: 405 QIDTMEED---PLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNRWKFYLKDGVMC 459
Query: 390 INNKDILFNKATGEFDF 406
+D +F KA GE ++
Sbjct: 460 FGGRDYVFAKAIGEAEW 476
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 26/111 (23%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+ D R S
Sbjct: 10 LYRSVIEDVIEGVRDLFAEEGIEEQVLKDLKKLWETKVLQSKATEDFFRNSVH------- 62
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 117
+P+ L +P + PT LQ+ +P PLP TP
Sbjct: 63 --SPLFTLQLP------HGLPT---------LQSTASLLIPAGRPLPSFTP 96
>gi|12313737|gb|AAG50432.1|AF250835_1 TFIIA-alpha/beta-like factor [Mus musculus]
Length = 468
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T+++++ Q+DK+ R+K+RWK LKDG+M +D +F
Sbjct: 402 EEDPLNSGDD--VSEQDVPDLFDTENVIVCQYDKIHRSKNRWKFYLKDGVMCFGGRDYVF 459
Query: 398 NKATGEFDF 406
KA GE ++
Sbjct: 460 AKAIGEAEW 468
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+
Sbjct: 10 LYQSVIEDVIEGVRDLFAEEGIEEQVLKDLKKLWETKVLQS 50
>gi|443893851|dbj|GAC71307.1| RNA polymerase II transcription initiation factor TFIIA, large
chain [Pseudozyma antarctica T-34]
Length = 214
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+VL +DKV R K++WKC LKDG+ I+ +D LF K GEF++
Sbjct: 172 MVLCLYDKVQRVKNKWKCVLKDGVASIDGRDYLFAKCNGEFEW 214
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMI 47
M+ VY +I+DVI+ VR +F G + VL ELQ WE K++
Sbjct: 1 MSNKVVSQVYRGIIDDVINNVRQDFEEMGIEKEVLEELQRSWEAKIV 47
>gi|254910985|ref|NP_076119.2| TFIIA-alpha and beta-like factor [Mus musculus]
gi|34098596|sp|Q8R4I4.2|TF2AY_MOUSE RecName: Full=TFIIA-alpha and beta-like factor; AltName:
Full=General transcription factor II A, 1-like factor
gi|12838693|dbj|BAB24296.1| unnamed protein product [Mus musculus]
gi|30047818|gb|AAH50756.1| General transcription factor IIA, 1-like [Mus musculus]
gi|148706704|gb|EDL38651.1| general transcription factor II A, 1-like factor [Mus musculus]
Length = 468
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T+++++ Q+DK+ R+K+RWK LKDG+M +D +F
Sbjct: 402 EEDPLNSGDD--VSEQDVPDLFDTENVIVCQYDKIHRSKNRWKFYLKDGVMCFGGRDYVF 459
Query: 398 NKATGEFDF 406
KA GE ++
Sbjct: 460 AKAIGEAEW 468
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+
Sbjct: 10 LYQSVIEDVIEGVRDLFAEEGIEEQVLKDLKKLWETKVLQS 50
>gi|71022199|ref|XP_761330.1| hypothetical protein UM05183.1 [Ustilago maydis 521]
gi|46097824|gb|EAK83057.1| hypothetical protein UM05183.1 [Ustilago maydis 521]
Length = 214
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+VL +DKV R K++WKC LKDG+ I+ +D LF K GEF++
Sbjct: 172 MVLCLYDKVQRVKNKWKCVLKDGVASIDGRDYLFAKCNGEFEW 214
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMI 47
M+ +Y +I+DV++ VR +F G + VL ELQ WE K++
Sbjct: 1 MSNKVVSQLYRSIIDDVVNNVRQDFEEMGIEKEVLEELQRSWEAKIV 47
>gi|343428839|emb|CBQ72384.1| related to TOA1-transcription factor TFIIA-L [Sporisorium reilianum
SRZ2]
Length = 212
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+VL +DKV R K++WKC LKDG+ I+ +D LF K GEF++
Sbjct: 170 MVLCLYDKVQRVKNKWKCVLKDGVASIDGRDYLFAKCNGEFEW 212
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ VY +I+DVI+ V +F G + VL ELQ WE K++ V
Sbjct: 1 MSNKIVSQVYRSIIDDVINNVHQDFEEMGIEKEVLEELQRSWEAKIVATQV 51
>gi|115492297|ref|XP_001210776.1| predicted protein [Aspergillus terreus NIH2624]
gi|114197636|gb|EAU39336.1| predicted protein [Aspergillus terreus NIH2624]
Length = 441
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 337 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 396
DD + L D D D V Q ++L +DKV R K++WKC LKDGI+ K+ +
Sbjct: 380 DDPDDLVAEDHDAEDAVGQ--------VMLCTYDKVARVKNKWKCTLKDGILTTGGKEYV 431
Query: 397 FNKATGEFDF 406
F+K GEF++
Sbjct: 432 FHKGQGEFEW 441
>gi|361129224|gb|EHL01136.1| putative Transcription initiation factor IIA large subunit [Glarea
lozoyensis 74030]
Length = 429
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 14/79 (17%)
Query: 330 QNDAAEDDDDEPLNENDDDE------LDDVDQG------EELNTQHLVLAQFDKVTRTKS 377
Q+D A DDD L E D DE LDD D G +E + H++L +DKV R K+
Sbjct: 351 QHDGAGSDDD--LKEEDIDEDAINSDLDDPDDGLNEEDDDEDSNSHIMLCMYDKVQRVKN 408
Query: 378 RWKCALKDGIMHINNKDIL 396
+WKC +KDG++ +N K+ +
Sbjct: 409 KWKCVMKDGVLTVNGKETI 427
>gi|348507302|ref|XP_003441195.1| PREDICTED: stonin-1-like [Oreochromis niloticus]
Length = 1115
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 331 NDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
++ A ++++PLN DD + + D + +T ++++ Q+DK+ R+K+RWK LKDG+M
Sbjct: 1042 DELANIEEEDPLNSGDD--VIEQDIPDLFDTDNVIVCQYDKIHRSKNRWKFHLKDGVMCY 1099
Query: 391 NNKDILFNKATGEFDF 406
+D +F+KA GE ++
Sbjct: 1100 GGRDYVFSKAVGEAEW 1115
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 32/48 (66%)
Query: 5 ATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y+ +I+DVI VR+ F++ G + VL++L+ +WE K++Q+ +
Sbjct: 684 CQAKLYLSIIDDVIDSVRELFLDEGVEDRVLDDLRHLWESKVMQSKAM 731
>gi|378730061|gb|EHY56520.1| transcription initiation factor TFIIA large subunit [Exophiala
dermatitidis NIH/UT8656]
Length = 382
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 360 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
NT ++L +DKV R K++WKC LKDGI ++ + +F+K GEF++
Sbjct: 336 NTDQVMLCTYDKVQRVKNKWKCTLKDGIFRVDGTEYVFHKGQGEFEW 382
>gi|119494970|ref|XP_001264282.1| transcription factor TFIIA complex subunit Toa1, putative
[Neosartorya fischeri NRRL 181]
gi|119412444|gb|EAW22385.1| transcription factor TFIIA complex subunit Toa1, putative
[Neosartorya fischeri NRRL 181]
Length = 409
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 345 NDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 404
+D D+L D E + ++L +DKV R K++WKC LKDGI+ K+ +F+K GEF
Sbjct: 348 DDPDDLVAEDHDAEDSVGQVMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYVFHKGQGEF 407
Query: 405 DF 406
++
Sbjct: 408 EW 409
>gi|47228952|emb|CAG09467.1| unnamed protein product [Tetraodon nigroviridis]
Length = 936
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 337 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 396
++++PLN DD + + D + +T ++++ Q+DK+ R+K+RWK LKDG+M +D +
Sbjct: 869 EEEDPLNSGDD--VIEQDIPDLFDTDNVIVCQYDKIHRSKNRWKFHLKDGVMCYGGRDYV 926
Query: 397 FNKATGEFDF 406
F+KA GE ++
Sbjct: 927 FSKAVGEAEW 936
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 31/45 (68%)
Query: 10 YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID 54
Y +I+DVI +R+ F++ G + ++++L+ +WE KM+Q+ + D
Sbjct: 499 YFSIIDDVIESIRELFLDEGLEDRLVDDLRHLWESKMMQSKAMED 543
>gi|160331641|ref|XP_001712527.1| hypothetical protein HAN_3g392 [Hemiselmis andersenii]
gi|159765976|gb|ABW98202.1| hypothetical protein HAN_3g392 [Hemiselmis andersenii]
Length = 281
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 288 PYDDVLSTP-NIYNYQ--------GVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDD 338
P + S+P NI+ Y+ + E+ + P N A + D +
Sbjct: 152 PLEKFFSSPINIFKYEKNWFNKYGSFLEENLDFFFDPKKNSTLAEKKNFQEEKDQNFSNL 211
Query: 339 DEPLNENDDDELDDVDQG--EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 396
+ L D+EL+ + G EE ++ +LA +KV R ++W+ LKDGI+H+N KD+L
Sbjct: 212 IDSLGSELDEELESNEIGGVEEKIPKNFILAITEKVYRRNTKWRITLKDGILHLNEKDLL 271
Query: 397 FNKATGEF 404
FN EF
Sbjct: 272 FNSCKCEF 279
>gi|392574378|gb|EIW67514.1| hypothetical protein TREMEDRAFT_64096 [Tremella mesenterica DSM
1558]
Length = 230
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+V +DKV R K++WK KDG++HIN +D LF + TGEF++
Sbjct: 188 IVFCVYDKVQRVKNKWKTVFKDGLVHINGRDYLFTRCTGEFEW 230
>gi|121701035|ref|XP_001268782.1| transcription factor TFIIA complex subunit Toa1, putative
[Aspergillus clavatus NRRL 1]
gi|119396925|gb|EAW07356.1| transcription factor TFIIA complex subunit Toa1, putative
[Aspergillus clavatus NRRL 1]
Length = 402
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 345 NDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 404
+D D+L D E ++L +DKV R K++WKC LKDGI+ K+ +F+K GEF
Sbjct: 341 DDPDDLVAEDHDAEDAVGQVMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYVFHKGQGEF 400
Query: 405 DF 406
++
Sbjct: 401 EW 402
>gi|256085877|ref|XP_002579137.1| tfiia large subunit [Schistosoma mansoni]
gi|353228765|emb|CCD74936.1| putative tfiia large subunit [Schistosoma mansoni]
Length = 448
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D + + ++V+ Q+DK+ R +++W+ LKDGIM IN +D +F KA
Sbjct: 385 PLNSEDD--VSDEEPEVLFESDNVVVCQYDKIHRARNKWRFHLKDGIMSINGRDHIFQKA 442
Query: 401 TGEFDF 406
GE ++
Sbjct: 443 VGEAEW 448
>gi|325651986|ref|NP_001191774.1| TFIIA-alpha and beta-like factor [Equus caballus]
Length = 473
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 329 TQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIM 388
+Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDGIM
Sbjct: 401 SQIDVVEED---PLNSGDD--VSEQDMSDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGIM 455
Query: 389 HINNKDILFNKATGEFDF 406
+D +F +A G+ ++
Sbjct: 456 CFGGRDYVFARAIGDAEW 473
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI R F G E VL +L+ +WE K++Q+ D R S
Sbjct: 10 LYRSVIEDVIEGARHLFAEEGVEEQVLKDLKQLWETKVLQSKATEDFFRNSLH------- 62
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++PTA ++ P
Sbjct: 63 --SPLFTLQLPHSLHQTLQSPTASLVIP 88
>gi|353228766|emb|CCD74937.1| putative tfiia large subunit [Schistosoma mansoni]
Length = 578
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D + + ++V+ Q+DK+ R +++W+ LKDGIM IN +D +F KA
Sbjct: 515 PLNSEDD--VSDEEPEVLFESDNVVVCQYDKIHRARNKWRFHLKDGIMSINGRDHIFQKA 572
Query: 401 TGEFDF 406
GE ++
Sbjct: 573 VGEAEW 578
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 4 SATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKM 46
+ Y VIEDVIS V+DEFV +G +L EL+ +W+ K+
Sbjct: 2 TCVAKFYDDVIEDVISGVKDEFVEDGGDIQILEELKKLWKSKL 44
>gi|256085875|ref|XP_002579136.1| tfiia large subunit [Schistosoma mansoni]
Length = 578
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D + + ++V+ Q+DK+ R +++W+ LKDGIM IN +D +F KA
Sbjct: 515 PLNSEDD--VSDEEPEVLFESDNVVVCQYDKIHRARNKWRFHLKDGIMSINGRDHIFQKA 572
Query: 401 TGEFDF 406
GE ++
Sbjct: 573 VGEAEW 578
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 4 SATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+ Y VIEDVIS V+DEFV +G +L EL+ +W+ K+ + V
Sbjct: 2 TCVAKFYDDVIEDVISGVKDEFVEDGGDIQILEELKKLWKSKLAETHVF 50
>gi|331229675|ref|XP_003327503.1| hypothetical protein PGTG_09037 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306493|gb|EFP83084.1| hypothetical protein PGTG_09037 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 189
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
LV+A +DKV R K++WK LKDGI+ + KD LF+K GEF++
Sbjct: 147 LVIALYDKVQRVKNKWKITLKDGIVSVQGKDYLFHKCNGEFEW 189
>gi|348574700|ref|XP_003473128.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 2 [Cavia
porcellus]
Length = 442
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 329 TQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIM 388
+Q D E+D PLN DD DV + +T ++++ Q+DK+ R K++WK LKDG+M
Sbjct: 370 SQADIVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRNKNKWKFYLKDGVM 424
Query: 389 HINNKDILFNKATGEFDF 406
+D +F KA G+ ++
Sbjct: 425 CFGGRDYVFAKAIGDAEW 442
>gi|403260710|ref|XP_003922802.1| PREDICTED: stonin-1 isoform 1 [Saimiri boliviensis boliviensis]
gi|403260712|ref|XP_003922803.1| PREDICTED: stonin-1 isoform 2 [Saimiri boliviensis boliviensis]
Length = 1182
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 306 NEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE----------PLNENDDDELDDVDQ 355
NE I++T ++ ++ ++ AA D+E PLN DD + + D
Sbjct: 1074 NELLGIIDTEDLKVLEEEADSISNEDSAANSSDNEDSQVDIVEEDPLNSGDD--VSEQDV 1131
Query: 356 GEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+ +T ++++ Q+DK+ R+K++WK LKDG+M +D +F KA G+ ++
Sbjct: 1132 PDLFDTDNIIVCQYDKIHRSKNKWKFFLKDGVMCFGGRDYVFAKAIGDAEW 1182
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHNLHQTLQSSTASLVIP 792
>gi|385301255|gb|EIF45458.1| tfiia large subunit [Dekkera bruxellensis AWRI1499]
Length = 329
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 337 DDDEPLNENDDDELDDVDQGEELNT--QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 394
D DE ++ DD E DD++ E+ + +++L +D+V R ++RWKC+LKDGI +I+ +D
Sbjct: 258 DSDEINSDLDDPESDDINSDEDNDNPEANIMLCLYDRVQRVRNRWKCSLKDGIANIDGQD 317
Query: 395 ILFNKATGEFDF 406
F KATG+ ++
Sbjct: 318 YAFQKATGDSEW 329
>gi|301753275|ref|XP_002912472.1| PREDICTED: stonin-1-like [Ailuropoda melanoleuca]
gi|281352647|gb|EFB28231.1| hypothetical protein PANDA_000224 [Ailuropoda melanoleuca]
Length = 1181
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 1110 QRDVVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 1164
Query: 390 INNKDILFNKATGEFDF 406
+D +F KA G+ ++
Sbjct: 1165 FGGRDYVFAKAIGDAEW 1181
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+ D R S
Sbjct: 714 LYRSVIEDVIEGVRDLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSVH------- 766
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFPP-TPLQTPIQTPLPGSTPLPGSTPLPG 120
+PV L +P + ++ TA ++ P PL + T L G++ S PG
Sbjct: 767 --SPVFTLQLPNSLHQTLQSSTASLVIPAGRPLPSFTTTEL-GTSNSSASFTFPG 818
>gi|226295290|gb|EEH50710.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 531
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R KS+WKC LKDGI+ K+ +F+K GEF++
Sbjct: 487 QVMLCTYDKVQRVKSKWKCTLKDGILTSGGKEYVFHKGNGEFEW 530
>gi|260941582|ref|XP_002614957.1| hypothetical protein CLUG_04972 [Clavispora lusitaniae ATCC 42720]
gi|238851380|gb|EEQ40844.1| hypothetical protein CLUG_04972 [Clavispora lusitaniae ATCC 42720]
Length = 260
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 7/71 (9%)
Query: 336 DDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDI 395
D DDE +E DDE D DQ ++L +DKV R K++WKC LK+GI +I +D
Sbjct: 197 DLDDELDSEKSDDE--DADQ-----EGQIMLCLYDKVQRVKNKWKCNLKEGIANIEGRDF 249
Query: 396 LFNKATGEFDF 406
+F +ATGE ++
Sbjct: 250 VFQRATGESEW 260
>gi|348574698|ref|XP_003473127.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 1 [Cavia
porcellus]
Length = 476
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 329 TQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIM 388
+Q D E+D PLN DD DV + +T ++++ Q+DK+ R K++WK LKDG+M
Sbjct: 404 SQADIVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRNKNKWKFYLKDGVM 458
Query: 389 HINNKDILFNKATGEFDF 406
+D +F KA G+ ++
Sbjct: 459 CFGGRDYVFAKAIGDAEW 476
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
+Y +IEDVI VRD F G E VLN+L+ +WE K++Q+
Sbjct: 10 LYKSIIEDVIEGVRDLFTEEGIEEHVLNDLKQLWETKVLQS 50
>gi|395508072|ref|XP_003758339.1| PREDICTED: TFIIA-alpha and beta-like factor [Sarcophilus harrisii]
Length = 487
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 416 QIDIVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 470
Query: 390 INNKDILFNKATGEFDF 406
KD +F KA G+ ++
Sbjct: 471 FGGKDYVFAKAIGDAEW 487
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI--IDRTSAPKQPAPGG 66
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ R S P
Sbjct: 11 LYRSVIEDVIEGVRELFTEEGIEEQVLKDLKQLWETKVMQSKATEGFFRNSHPG------ 64
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFP 94
P+ L +P+ + +T TA ++ P
Sbjct: 65 ---PLFTLQLPHNLHQTIQTSTASLVIP 89
>gi|325651976|ref|NP_001191770.1| TFIIA-alpha and beta-like factor [Callithrix jacchus]
Length = 478
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 306 NEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE----------PLNENDDDELDDVDQ 355
NE I++T ++ ++ ++ AA D+E PLN DD DV
Sbjct: 370 NEFLGIIDTGDLKVLEEEADSISNEDSAATSSDNEDPQVDIVEEDPLNSGDDVSEQDVP- 428
Query: 356 GEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+ +T ++++ Q+DK+ R+K++WK LKDG+M +D +F+KA G+ ++
Sbjct: 429 -DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVFSKAIGDAEW 478
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI +VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIERVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ A ++ P
Sbjct: 63 SPLFTLQLPHNLHQTLQSSAASLVIP 88
>gi|432906525|ref|XP_004077573.1| PREDICTED: stonin-1-like [Oryzias latipes]
Length = 1077
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 331 NDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
++ A+ ++ +PLN DD D+ + +T ++++ Q+DK+ R+K+RWK LKDG++
Sbjct: 1004 DELADVEEGDPLNSGDDVVEQDIP--DLFDTDNVIVCQYDKIHRSKNRWKFHLKDGVICY 1061
Query: 391 NNKDILFNKATGEFDF 406
+D +F+KA GE ++
Sbjct: 1062 GGRDYVFSKAVGEAEW 1077
>gi|449277475|gb|EMC85630.1| Stonin-1 [Columba livia]
Length = 1215
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD++ + D + +T +++ Q+DK+ R+K++WK LKDG+M
Sbjct: 1144 QVDIVEED---PLN--SDDDVSEQDIPDLFDTDNVIFCQYDKIHRSKNKWKFYLKDGVMS 1198
Query: 390 INNKDILFNKATGEFDF 406
KD +F KA G+ ++
Sbjct: 1199 FEGKDHVFAKAVGDAEW 1215
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
+Y +IEDVI VR+ F G E VL EL+ +WE K++Q+
Sbjct: 739 LYKSIIEDVIEGVRELFAEEGLEEQVLKELKQLWETKVVQS 779
>gi|325652002|ref|NP_001191779.1| TFIIA-alpha and beta-like factor [Monodelphis domestica]
Length = 487
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 416 QIDIVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 470
Query: 390 INNKDILFNKATGEFDF 406
KD +F KA G+ ++
Sbjct: 471 FGGKDYVFAKAIGDAEW 487
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI--IDRTSAPKQPAPGG 66
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ R S P
Sbjct: 10 LYRSVIEDVIEGVRELFTEEGIEEQVLKDLKQLWETKVMQSKATEGFFRNSHPG------ 63
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFP 94
P+ L +P+ + +T TA ++ P
Sbjct: 64 ---PLFTLQLPHNLHQTIQTSTASLVIP 88
>gi|260830589|ref|XP_002610243.1| hypothetical protein BRAFLDRAFT_126818 [Branchiostoma floridae]
gi|229295607|gb|EEN66253.1| hypothetical protein BRAFLDRAFT_126818 [Branchiostoma floridae]
Length = 311
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 14/79 (17%)
Query: 334 AEDDDDEPLNENDDDE------LDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGI 387
AE +++EPLN DD L D+D ++V+ Q++++ R+K++WK LKDGI
Sbjct: 241 AEGEEEEPLNSEDDVSDDDPTDLFDID--------NVVVCQYERINRSKNKWKFHLKDGI 292
Query: 388 MHINNKDILFNKATGEFDF 406
M++ KD +F KATG+ ++
Sbjct: 293 MNLGGKDYVFQKATGDAEW 311
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+SA +Y VI+DVI+ VR+ F++ E VL EL+ +WE K++Q+ +
Sbjct: 4 SSAVSKLYRSVIDDVINNVREAFLDEQVDEQVLQELKQVWETKLLQSKAV 53
>gi|452844491|gb|EME46425.1| hypothetical protein DOTSEDRAFT_110198, partial [Dothistroma
septosporum NZE10]
Length = 72
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 32/42 (76%)
Query: 365 VLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+L +DKV R K++WKC LKDG+M +N K+ +F+K GEF++
Sbjct: 31 ILCTYDKVQRVKNKWKCTLKDGVMSVNGKEWVFHKGMGEFEW 72
>gi|295664316|ref|XP_002792710.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278824|gb|EEH34390.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 579
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R KS+WKC LKDGI+ K+ +F+K GEF++
Sbjct: 535 QVMLCTYDKVQRVKSKWKCTLKDGILTSGGKEYVFHKGNGEFEW 578
>gi|340713524|ref|XP_003395292.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 1 [Bombus terrestris]
gi|340713526|ref|XP_003395293.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 2 [Bombus terrestris]
gi|350409465|ref|XP_003488747.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 1 [Bombus impatiens]
Length = 382
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 334 AEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNK 393
A ++EPLN +D++ D D + +T ++V+ Q+DK+TR++++WK LKDGIM++N K
Sbjct: 312 AAAREEEPLN--SEDDVTDDDPADLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLNGK 369
Query: 394 DILFNKATGEFDF 406
D +F K G+ ++
Sbjct: 370 DYVFQKMNGDAEW 382
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MALSQTTVLKLYNTVIEDVISGVRESFIDEGVDEQVLQELKQIWETKLMSSKAV 54
>gi|242778223|ref|XP_002479195.1| transcription factor TFIIA complex subunit Toa1, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722814|gb|EED22232.1| transcription factor TFIIA complex subunit Toa1, putative
[Talaromyces stipitatus ATCC 10500]
Length = 374
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R K++WKC LKDGI+ K+ +F+K GEF++
Sbjct: 332 VMLCTYDKVQRVKNKWKCTLKDGILSTGGKEYVFHKGQGEFEW 374
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
MA G VY RVI++V R +F G + L E++ W+ K+ GV
Sbjct: 1 MANQQVGTVYDRVIQEVCEASRVDFEEGGVDQQTLEEMRRSWQQKLSSLGV 51
>gi|302309478|ref|NP_986894.2| AGR228Cp [Ashbya gossypii ATCC 10895]
gi|299788378|gb|AAS54718.2| AGR228Cp [Ashbya gossypii ATCC 10895]
gi|374110144|gb|AEY99049.1| FAGR228Cp [Ashbya gossypii FDAG1]
Length = 200
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 10/88 (11%)
Query: 321 QASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQ--HLVLAQFDKVTRTKSR 378
QA A++ ++ D DD DDE V+ GEE N +++L ++KV R K++
Sbjct: 121 QAKKSALLETDEINSDLDD------TDDEY--VNFGEEENGSDVNIMLCLYEKVLRVKNK 172
Query: 379 WKCALKDGIMHINNKDILFNKATGEFDF 406
WKC LKDG+ INNKD F K+ GE ++
Sbjct: 173 WKCNLKDGVATINNKDYAFQKSQGESEW 200
>gi|238487178|ref|XP_002374827.1| transcription factor TFIIA complex subunit Toa1, putative
[Aspergillus flavus NRRL3357]
gi|220699706|gb|EED56045.1| transcription factor TFIIA complex subunit Toa1, putative
[Aspergillus flavus NRRL3357]
gi|391867341|gb|EIT76587.1| transcription factor TFIIA complex subunit Toa1, putative
[Aspergillus oryzae 3.042]
Length = 411
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R K++WKC LKDGI+ K+ +F+K GEF++
Sbjct: 368 QVMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYVFHKGQGEFEW 411
>gi|255713680|ref|XP_002553122.1| KLTH0D09482p [Lachancea thermotolerans]
gi|238934502|emb|CAR22684.1| KLTH0D09482p [Lachancea thermotolerans CBS 6340]
Length = 224
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 9/76 (11%)
Query: 331 NDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
N +D +D+ LN + +DE D +++VL ++KV R K++WKC LKDG+ I
Sbjct: 158 NSDLDDSEDDYLNSSGEDEGQD---------ENIVLCLYEKVLRVKNKWKCNLKDGLATI 208
Query: 391 NNKDILFNKATGEFDF 406
N+KD F +A GE ++
Sbjct: 209 NHKDYAFQRAQGETEW 224
>gi|169770413|ref|XP_001819676.1| transcription factor IIA, alpha/beta subunit family protein
[Aspergillus oryzae RIB40]
gi|83767535|dbj|BAE57674.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 411
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R K++WKC LKDGI+ K+ +F+K GEF++
Sbjct: 368 QVMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYVFHKGQGEFEW 411
>gi|328858362|gb|EGG07475.1| hypothetical protein MELLADRAFT_85732 [Melampsora larici-populina
98AG31]
Length = 187
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
LV+A +DKV R K++WK LKDGI+ + KD +F+K GEF++
Sbjct: 145 LVIALYDKVQRVKNKWKITLKDGIVSVQGKDYVFHKCNGEFEW 187
>gi|113931524|ref|NP_001039213.1| TFIIA-alpha and beta-like factor [Xenopus (Silurana) tropicalis]
gi|89268881|emb|CAJ83735.1| TFIIA-alpha/beta-like factor [Xenopus (Silurana) tropicalis]
Length = 472
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD +V + +T ++++ Q+DK+ R+K++WK LKDG+M KD +F
Sbjct: 406 EEDPLNSGDDVSEQEVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMSFGGKDYVF 463
Query: 398 NKATGEFDF 406
+KA GE ++
Sbjct: 464 SKAIGEAEW 472
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
+Y +IEDV+ VR+ FV G E VL +L+ +WE+K++Q+
Sbjct: 13 LYKSIIEDVMESVRELFVEEGVDEQVLKDLKQLWEIKVLQS 53
>gi|163915442|gb|AAI57264.1| general transcription factor IIA, 1-like [Xenopus (Silurana)
tropicalis]
Length = 472
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD +V + +T ++++ Q+DK+ R+K++WK LKDG+M KD +F
Sbjct: 406 EEDPLNSGDDVSEQEVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMSFGGKDYVF 463
Query: 398 NKATGEFDF 406
+KA GE ++
Sbjct: 464 SKAIGEAEW 472
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
+Y +IEDV+ VR+ FV G E VL +L+ +WE K++Q+
Sbjct: 13 LYKSIIEDVMESVRELFVEEGVDEQVLKDLKQLWETKVLQS 53
>gi|313225923|emb|CBY21066.1| unnamed protein product [Oikopleura dioica]
Length = 326
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 336 DDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDI 395
+D EPLN +DD D + E T+++++ QF+K+ R ++RW+ L +GIM +N KD
Sbjct: 258 QEDAEPLNSDDDV--SDSNDNEIFETENILICQFEKIARVRNRWRFQLVNGIMTLNGKDY 315
Query: 396 LFNKATGEFDF 406
+F KATGE ++
Sbjct: 316 VFQKATGEGEW 326
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKM 46
M + +Y V+E+VISKVR+ ++ G ESVL +L+ +W K+
Sbjct: 6 MVPNPVPRLYESVVEEVISKVRESVLDEGLDESVLCDLKALWTKKL 51
>gi|358370104|dbj|GAA86716.1| transcription factor TFIIA complex subunit Toa1 [Aspergillus
kawachii IFO 4308]
Length = 419
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 341 PLNENDDDELDDV--DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFN 398
+N + DD D V D E ++L +DKV R K++WKC LKDGI+ K+ +F+
Sbjct: 352 AINSDLDDPDDLVAEDHDAEDAVGQVMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYVFH 411
Query: 399 KATGEFDF 406
K GEF++
Sbjct: 412 KGQGEFEW 419
>gi|212533489|ref|XP_002146901.1| transcription factor TFIIA complex subunit Toa1, putative
[Talaromyces marneffei ATCC 18224]
gi|210072265|gb|EEA26354.1| transcription factor TFIIA complex subunit Toa1, putative
[Talaromyces marneffei ATCC 18224]
Length = 366
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 9/71 (12%)
Query: 336 DDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDI 395
DD D+ +NE D E D+ ++L +DKV R K++WKC LKDGI+ K+
Sbjct: 305 DDPDDLVNE--DPEGDEA-------VGEVMLCTYDKVQRVKNKWKCTLKDGILSTGGKEY 355
Query: 396 LFNKATGEFDF 406
+F+K GEF++
Sbjct: 356 VFHKGQGEFEW 366
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
MA G VY RVI++V R +F G + L E++ W+ K+ GV
Sbjct: 1 MANQQVGTVYDRVIQEVCEASRVDFEEGGVDQQTLEEMRRSWQQKLSSLGV 51
>gi|340713528|ref|XP_003395294.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 3 [Bombus terrestris]
gi|350409467|ref|XP_003488748.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 2 [Bombus impatiens]
Length = 360
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 334 AEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNK 393
A ++EPLN +D++ D D + +T ++V+ Q+DK+TR++++WK LKDGIM++N K
Sbjct: 290 AAAREEEPLN--SEDDVTDDDPADLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLNGK 347
Query: 394 DILFNKATGEFDF 406
D +F K G+ ++
Sbjct: 348 DYVFQKMNGDAEW 360
>gi|317025725|ref|XP_001389682.2| transcription factor IIA, alpha/beta subunit family protein
[Aspergillus niger CBS 513.88]
Length = 416
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 341 PLNENDDDELDDV--DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFN 398
+N + DD D V D E ++L +DKV R K++WKC LKDGI+ K+ +F+
Sbjct: 349 AINSDLDDPDDLVAEDHDAEDAVGQVMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYVFH 408
Query: 399 KATGEFDF 406
K GEF++
Sbjct: 409 KGQGEFEW 416
>gi|33312516|gb|AAQ04071.1|AF424776_1 TFIIAa/b-like factor [Xenopus laevis]
gi|34099894|gb|AAP44968.1| transcription factor ALF [Xenopus laevis]
Length = 472
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + + + +T ++++ Q+DK+ R+K++WK LKDG+M KD +F
Sbjct: 406 EEDPLNSGDD--VSEQEVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMSFGGKDYVF 463
Query: 398 NKATGEFDF 406
+KA GE ++
Sbjct: 464 SKAIGEAEW 472
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
+Y +IEDV+ VR+ FV G E VL EL+ +WE K++Q+
Sbjct: 13 LYKSIIEDVMESVREIFVEEGVDEQVLKELKQLWETKLLQS 53
>gi|242018053|ref|XP_002429497.1| transcription initiation factor IIA alpha chain TFIIA p30, putative
[Pediculus humanus corporis]
gi|212514435|gb|EEB16759.1| transcription initiation factor IIA alpha chain TFIIA p30, putative
[Pediculus humanus corporis]
Length = 359
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 38/48 (79%)
Query: 359 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+T ++V+ QFDK+TR++++WK LKDGIM+++ KD +F ++ G+ ++
Sbjct: 312 FDTDNVVVCQFDKITRSRNKWKFYLKDGIMNLSGKDFVFQRSNGDAEW 359
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
++ S +Y VIEDV++ VR+ F+++G E VL EL+ IWE K+ Q+ ++ T P+
Sbjct: 3 LSQSTVLQLYHSVIEDVVTNVRESFLDDGVDEQVLQELKQIWESKL-QSTKAVELTPEPQ 61
Query: 61 QP 62
+P
Sbjct: 62 EP 63
>gi|425770639|gb|EKV09107.1| Transcription factor TFIIA complex subunit Toa1, putative
[Penicillium digitatum Pd1]
gi|425771945|gb|EKV10373.1| Transcription factor TFIIA complex subunit Toa1, putative
[Penicillium digitatum PHI26]
Length = 371
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R K++WKC LKDGI+ K+ +F+K GEF++
Sbjct: 329 VMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYVFHKGQGEFEW 371
>gi|255941820|ref|XP_002561679.1| Pc16g13800 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586302|emb|CAP94050.1| Pc16g13800 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 324
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R K++WKC LKDGI+ K+ +F+K GEF++
Sbjct: 282 VMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYVFHKGQGEFEW 324
>gi|332226473|ref|XP_003262414.1| PREDICTED: TFIIA-alpha and beta-like factor-like [Nomascus
leucogenys]
Length = 444
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 373 QVDIVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 427
Query: 390 INNKDILFNKATGEFDF 406
+D +F KA G+ ++
Sbjct: 428 FGGRDYVFAKAIGDAEW 444
>gi|351695612|gb|EHA98530.1| Stonin-1 [Heterocephalus glaber]
Length = 1174
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 329 TQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIM 388
+Q D E+D PLN DD DV + +T ++++ Q+DK+ R K++WK LKDGIM
Sbjct: 1102 SQLDIVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRNKNKWKFYLKDGIM 1156
Query: 389 HINNKDILFNKATGEFDF 406
+D +F KA G+ ++
Sbjct: 1157 CFGGRDYVFAKAIGDAEW 1174
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
+Y +IEDVI VRD F G E VL +L+ +WE K++Q+
Sbjct: 710 LYKSIIEDVIEGVRDLFAEEGIEEHVLKDLKQLWETKVLQS 750
>gi|148222810|ref|NP_001082755.1| TFIIA-alpha and beta-like factor [Xenopus laevis]
gi|49118685|gb|AAH73725.1| ALF protein [Xenopus laevis]
Length = 472
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + + + +T ++++ Q+DK+ R+K++WK LKDG+M KD +F
Sbjct: 406 EEDPLNSGDD--VSEQEVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMSFGGKDYVF 463
Query: 398 NKATGEFDF 406
+KA GE ++
Sbjct: 464 SKAIGEAEW 472
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
+Y +IEDV+ VR+ FV G E VL EL+ +WE K++Q+
Sbjct: 13 LYKSIIEDVMESVREIFVEEGVDEQVLKELKQLWETKLLQS 53
>gi|332022952|gb|EGI63218.1| Transcription initiation factor IIA subunit 1 [Acromyrmex
echinatior]
Length = 373
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 38/48 (79%)
Query: 359 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+T ++V+ Q+DK+TR++++WK LKDGIM+++ KD +F KA G+ ++
Sbjct: 326 FDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLSGKDYVFQKANGDAEW 373
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MALSQTSVLKLYNTVIEDVISGVRESFMDEGVDEQVLLELKQIWEGKLMASKAV 54
>gi|307179337|gb|EFN67701.1| Transcription initiation factor IIA subunit 1 [Camponotus
floridanus]
Length = 373
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 38/48 (79%)
Query: 359 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+T ++V+ Q+DK+TR++++WK LKDGIM+++ KD +F KA G+ ++
Sbjct: 326 FDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLSGKDYVFQKANGDAEW 373
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VIEDVI+ VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MALSQTSVLKLYNTVIEDVIAGVRESFIDEGVDEQVLQELKQIWETKLMASKAV 54
>gi|327262767|ref|XP_003216195.1| PREDICTED: TFIIA-alpha and beta-like factor-like [Anolis
carolinensis]
Length = 152
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 35/48 (72%)
Query: 359 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+T ++++ Q+DKV R+K+RWK LKDG+M KD +F+KA G+ ++
Sbjct: 105 FDTDNIIVCQYDKVQRSKNRWKFYLKDGVMCFEGKDYVFSKAVGDAEW 152
>gi|332226467|ref|XP_003262411.1| PREDICTED: TFIIA-alpha and beta-like factor-like [Nomascus
leucogenys]
Length = 478
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 407 QVDIVEED---PLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 461
Query: 390 INNKDILFNKATGEFDF 406
+D +F KA G+ ++
Sbjct: 462 FGGRDYVFAKAIGDAEW 478
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI +VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIERVRNLFAEEGIQEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>gi|355565684|gb|EHH22113.1| hypothetical protein EGK_05316 [Macaca mulatta]
Length = 1182
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 1111 QVDIVEED---PLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 1165
Query: 390 INNKDILFNKATGEFDF 406
+D +F KA G+ ++
Sbjct: 1166 FGGRDYVFAKAIGDAEW 1182
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHSLHQTLQSATASLVIP 792
>gi|332226469|ref|XP_003262412.1| PREDICTED: TFIIA-alpha and beta-like factor-like [Nomascus
leucogenys]
gi|441641692|ref|XP_004090392.1| PREDICTED: TFIIA-alpha and beta-like factor-like [Nomascus
leucogenys]
Length = 1182
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 1111 QVDIVEED---PLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 1165
Query: 390 INNKDILFNKATGEFDF 406
+D +F KA G+ ++
Sbjct: 1166 FGGRDYVFAKAIGDAEW 1182
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI +VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIERVRNLFAEEGIQEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHSLHQTLQSSTASLVIP 792
>gi|325651994|ref|NP_001191776.1| TFIIA-alpha and beta-like factor [Oryctolagus cuniculus]
Length = 475
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 409 EEDPLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 466
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 467 AKAIGDAEW 475
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 16/90 (17%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID----RTSAPKQPAP 64
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D R A
Sbjct: 10 LYRSVIEDVIEGVRELFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNRVHA------ 63
Query: 65 GGPITPVHDLNVPYEGTEEYETPTAEILFP 94
PV L +P +G + TA ++ P
Sbjct: 64 -----PVFTLQLP-QGLHQTLQSTASLVIP 87
>gi|339235659|ref|XP_003379384.1| transcription initiation factor IIA subunit 1 [Trichinella
spiralis]
gi|316977961|gb|EFV60997.1| transcription initiation factor IIA subunit 1 [Trichinella
spiralis]
Length = 431
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 337 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 396
+D EPLN +DD + D E + ++ Q++KVTRT+++WK KDGIM+IN KD++
Sbjct: 229 EDGEPLNSDDDISVGD--PCEIFESDNVTACQYEKVTRTRNKWKFIFKDGIMNINGKDLV 286
>gi|297265978|ref|XP_002808082.1| PREDICTED: LOW QUALITY PROTEIN: stonin-1-like [Macaca mulatta]
Length = 1182
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 1111 QVDIVEED---PLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 1165
Query: 390 INNKDILFNKATGEFDF 406
+D +F KA G+ ++
Sbjct: 1166 FGGRDYVFAKAIGDAEW 1182
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPG 120
+P+ L +P+ + ++ TA ++ P T G++ + PG
Sbjct: 767 SPLFTLQLPHSLHQTLQSATASLVIPAGRTLXSFTTAELGTSNSSANFTFPG 818
>gi|291386812|ref|XP_002709923.1| PREDICTED: hCG16775-like [Oryctolagus cuniculus]
Length = 1176
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1110 EEDPLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1167
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 1168 AKAIGDAEW 1176
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 16/90 (17%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID----RTSAPKQPAP 64
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D R A
Sbjct: 711 LYRSVIEDVIEGVRELFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNRVHA------ 764
Query: 65 GGPITPVHDLNVPYEGTEEYETPTAEILFP 94
PV L +P +G + TA ++ P
Sbjct: 765 -----PVFTLQLP-QGLHQTLQSTASLVIP 788
>gi|402890863|ref|XP_003908691.1| PREDICTED: stonin-1 [Papio anubis]
gi|402890865|ref|XP_003908692.1| PREDICTED: stonin-1 [Papio anubis]
Length = 1182
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 1111 QVDIVEED---PLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 1165
Query: 390 INNKDILFNKATGEFDF 406
+D +F KA G+ ++
Sbjct: 1166 FGGRDYVFAKAIGDAEW 1182
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHSLHQTLQSATASLVIP 792
>gi|67969611|dbj|BAE01154.1| unnamed protein product [Macaca fascicularis]
gi|67969631|dbj|BAE01164.1| unnamed protein product [Macaca fascicularis]
gi|67971998|dbj|BAE02341.1| unnamed protein product [Macaca fascicularis]
Length = 478
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 407 QVDIVEED---PLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 461
Query: 390 INNKDILFNKATGEFDF 406
+D +F KA G+ ++
Sbjct: 462 FGGRDYVFAKAIGDAEW 478
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSATASLVIP 88
>gi|307213766|gb|EFN89104.1| Transcription initiation factor IIA subunit 1 [Harpegnathos
saltator]
Length = 367
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 38/48 (79%)
Query: 359 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+T ++V+ Q+DK+TR++++WK LKDGIM+++ KD +F KA G+ ++
Sbjct: 320 FDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLSGKDYVFQKANGDAEW 367
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
++ S +Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ +
Sbjct: 3 LSHSTVLKLYNTVIEDVISGVRESFIDEGVDEQVLQELKQIWETKLLSCKAV 54
>gi|325651980|ref|NP_001191772.1| TFIIA-alpha and beta-like factor [Canis lupus familiaris]
Length = 476
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 405 QIDIVEED---PLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 459
Query: 390 INNKDILFNKATGEFDF 406
+D +F KA G+ ++
Sbjct: 460 FGGRDYVFAKAIGDAEW 476
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+ D R S
Sbjct: 10 LYRSVIEDVIEGVRDLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSVH------- 62
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFP 94
+PV L +P + ++ TA ++ P
Sbjct: 63 --SPVFTLQLPNSLHQTLQSSTASLVIP 88
>gi|426335518|ref|XP_004029267.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 4 [Gorilla
gorilla gorilla]
Length = 444
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 378 EEDPLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 435
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 436 AKAIGDAEW 444
>gi|301601620|ref|NP_001180416.1| TFIIA-alpha and beta-like factor isoform 2 [Homo sapiens]
gi|194378822|dbj|BAG63576.1| unnamed protein product [Homo sapiens]
Length = 444
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 378 EEDPLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 435
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 436 AKAIGDAEW 444
>gi|444706516|gb|ELW47853.1| TFIIA-alpha and beta-like factor [Tupaia chinensis]
Length = 416
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD DV + +T ++++ Q+DKV R+K++WK LKDG+M +D +F
Sbjct: 350 EEDPLNSGDDVSEQDVP--DLFDTDNVIVCQYDKVHRSKNKWKFYLKDGVMCFGGRDYVF 407
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 408 AKAIGDAEW 416
>gi|395829640|ref|XP_003787956.1| PREDICTED: stonin-1 isoform 1 [Otolemur garnettii]
Length = 1179
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 306 NEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE----------PLNENDDDELDDVDQ 355
NE I++T ++ +V ++ A D+E PLN DD DV
Sbjct: 1071 NEFLGIIDTGDLKVLEEEADSVSNEDSPANSSDNEDPKVARVEEDPLNSGDDVSEQDVP- 1129
Query: 356 GEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+ +T ++++ Q+DK+ R+K++WK LKDG+M +D +F KA G+ ++
Sbjct: 1130 -DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVFAKAIGDAEW 1179
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+ D R S
Sbjct: 715 LYRSVIEDVIEGVRDLFAEEGVEEQVLKDLKQLWETKVLQSKATEDFFRNSVH------- 767
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 768 --SPLFTLQLPHSLHQTLQS-TASLVIP 792
>gi|121483876|gb|ABM54237.1| SALF [Pan paniscus]
Length = 437
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 371 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 428
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 429 AKAIGDAEW 437
>gi|62898261|dbj|BAD97070.1| TFIIA-alpha/beta-like factor isoform 1 variant [Homo sapiens]
Length = 478
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 412 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 469
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 470 AKAIGDAEW 478
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>gi|5091688|gb|AAD39634.1|AF106857_1 TFIIA large subunit isoform ALF [Homo sapiens]
Length = 478
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 412 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 469
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 470 AKAIGDAEW 478
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>gi|40555809|gb|AAH64585.1| GTF2A1L protein [Homo sapiens]
Length = 477
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 411 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 468
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 469 AKAIGDAEW 477
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 9 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 61
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 62 SPLFTLQLPHSLHQTLQSSTASLVIP 87
>gi|431912697|gb|ELK14715.1| TFIIA-alpha and beta-like factor [Pteropus alecto]
Length = 808
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 737 QIDIVEED---PLNSGDD--VSEQDAPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 791
Query: 390 INNKDILFNKATGEFDF 406
+D +F KA G+ ++
Sbjct: 792 FGGRDYVFAKAIGDAEW 808
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+ D R S
Sbjct: 341 LYRSVIEDVIEGVRDLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSVH------- 393
Query: 67 PITPVHDLNVPYEGTEEYETPTAEI-LFPPTPLQTPIQTPLPGSTPLPGSTPLPG 120
+P+ L +P+ + ++ T I L L + GS L + PG
Sbjct: 394 --SPLFTLQLPHSLHQTLQSSTGWIQLVNLYHLDNQNKFLFGGSFELGANFTFPG 446
>gi|5091669|gb|AAD39617.1|AF026169_1 SALF [Homo sapiens]
Length = 1182
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1116 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1173
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 1174 AKAIGDAEW 1182
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHSLHQTLQSSTASLVIP 792
>gi|26787968|ref|NP_006863.2| TFIIA-alpha and beta-like factor isoform 1 [Homo sapiens]
gi|327478545|sp|Q9UNN4.2|TF2AY_HUMAN RecName: Full=TFIIA-alpha and beta-like factor; AltName:
Full=General transcription factor II A, 1-like factor
gi|19684124|gb|AAH25991.1| General transcription factor IIA, 1-like [Homo sapiens]
gi|119620599|gb|EAX00194.1| hCG2045898, isoform CRA_b [Homo sapiens]
gi|123981326|gb|ABM82492.1| TFIIA-alpha/beta-like factor [synthetic construct]
gi|123996161|gb|ABM85682.1| TFIIA-alpha/beta-like factor [synthetic construct]
Length = 478
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 412 EEDPLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 469
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 470 AKAIGDAEW 478
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>gi|426335512|ref|XP_004029264.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 1 [Gorilla
gorilla gorilla]
Length = 478
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 412 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 469
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 470 AKAIGDAEW 478
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>gi|325651934|ref|NP_001191755.1| TFIIA-alpha and beta-like factor [Pan troglodytes]
Length = 478
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 412 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 469
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 470 AKAIGDAEW 478
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>gi|343962023|dbj|BAK62599.1| stonin-1 [Pan troglodytes]
Length = 478
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 412 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 469
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 470 AKAIGDAEW 478
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>gi|29553944|ref|NP_758515.1| STON1-GTF2A1L protein isoform 1 [Homo sapiens]
gi|62822516|gb|AAY15064.1| unknown [Homo sapiens]
Length = 1182
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1116 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1173
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 1174 AKAIGDAEW 1182
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHSLHQTLQSSTASLVIP 792
>gi|426335514|ref|XP_004029265.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 2 [Gorilla
gorilla gorilla]
Length = 1186
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1120 EEDPLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1177
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 1178 AKAIGDAEW 1186
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 718 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 770
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 771 SPLFTLQLPHSLHQTLQSSTASLVIP 796
>gi|75516982|gb|AAI01773.1| STON1-GTF2A1L readthrough transcript [Homo sapiens]
gi|75517271|gb|AAI01775.1| STON1-GTF2A1L readthrough transcript [Homo sapiens]
Length = 1182
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1116 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1173
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 1174 AKAIGDAEW 1182
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHSLHQTLQSSTASLVIP 792
>gi|397504297|ref|XP_003822737.1| PREDICTED: stonin-1 [Pan paniscus]
Length = 1182
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1116 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1173
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 1174 AKAIGDAEW 1182
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHSLHQTLQSSTASLVIP 792
>gi|119620600|gb|EAX00195.1| hCG16775 [Homo sapiens]
Length = 1182
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1116 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1173
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 1174 AKAIGDAEW 1182
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHSLHQTLQSSTASLVIP 792
>gi|395829642|ref|XP_003787957.1| PREDICTED: stonin-1 isoform 2 [Otolemur garnettii]
Length = 1132
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 306 NEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE----------PLNENDDDELDDVDQ 355
NE I++T ++ +V ++ A D+E PLN DD DV
Sbjct: 1024 NEFLGIIDTGDLKVLEEEADSVSNEDSPANSSDNEDPKVARVEEDPLNSGDDVSEQDVP- 1082
Query: 356 GEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+ +T ++++ Q+DK+ R+K++WK LKDG+M +D +F KA G+ ++
Sbjct: 1083 -DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVFAKAIGDAEW 1132
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+
Sbjct: 715 LYRSVIEDVIEGVRDLFAEEGVEEQVLKDLKQLWETKVLQS 755
>gi|325651941|ref|NP_001191758.1| TFIIA-alpha and beta-like factor [Pongo abelii]
Length = 478
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 412 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 469
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 470 AKAIGDAEW 478
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNRIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>gi|330040435|ref|XP_003239911.1| hypothetical protein CPARA_3gp355 [Cryptomonas paramecium]
gi|327206837|gb|AEA39013.1| hypothetical protein CPARA_3gp355 [Cryptomonas paramecium]
Length = 275
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 5/66 (7%)
Query: 344 ENDDDELDDVD-----QGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFN 398
E+ D E ++++ + +E N+ + +L+ +K+ R +RWK LKDGI+H+NN+D+LF+
Sbjct: 208 ESTDSEYNNINNQPTNKHKEDNSINFILSIVNKIYRRNARWKVILKDGILHVNNRDLLFS 267
Query: 399 KATGEF 404
EF
Sbjct: 268 SCKCEF 273
>gi|76157743|gb|AAX28576.2| SJCHGC06110 protein [Schistosoma japonicum]
Length = 185
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D + + ++V+ Q+DK+ R +++W+ LKDGIM IN +D +F KA
Sbjct: 122 PLNSEDD--VSDEEPEVLFESDNVVVCQYDKIHRARNKWRFHLKDGIMSINGRDHVFQKA 179
Query: 401 TGEFDF 406
GE ++
Sbjct: 180 VGEAEW 185
>gi|310703594|ref|NP_001185523.1| STON1-GTF2A1L protein isoform 3 [Homo sapiens]
Length = 1135
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1069 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1126
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 1127 AKAIGDAEW 1135
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEI 91
+P+ L +P+ + ++ T +
Sbjct: 767 SPLFTLQLPHSLHQTLQSSTGHL 789
>gi|219520014|gb|AAI43521.1| STON1-GTF2A1L protein [Homo sapiens]
Length = 1135
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1069 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1126
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 1127 AKAIGDAEW 1135
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEI 91
+P+ L +P+ + ++ T +
Sbjct: 767 SPLFTLQLPHSLHQTLQSSTGHL 789
>gi|426335516|ref|XP_004029266.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 3 [Gorilla
gorilla gorilla]
Length = 1139
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1073 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1130
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 1131 AKAIGDAEW 1139
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 718 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 770
Query: 69 TPVHDLNVPYEGTEEYETPTAEI 91
+P+ L +P+ + ++ T +
Sbjct: 771 SPLFTLQLPHSLHQTLQSSTGHL 793
>gi|320582199|gb|EFW96417.1| TFIIA large subunit [Ogataea parapolymorpha DL-1]
Length = 234
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+++L +D+V R K++WKC LKDGI +I+ +D F KATGE ++
Sbjct: 191 NIMLCLYDRVQRVKNKWKCNLKDGIANIDGRDYAFQKATGESEW 234
>gi|302664214|ref|XP_003023741.1| transcription factor TFIIA complex subunit Toa1, putative
[Trichophyton verrucosum HKI 0517]
gi|291187751|gb|EFE43123.1| transcription factor TFIIA complex subunit Toa1, putative
[Trichophyton verrucosum HKI 0517]
Length = 411
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 338 DDEPLNENDDDELDDV-----------DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDG 386
DD P+ ++DD++ + +QGE+ ++L +DKV R KS+WKC LKDG
Sbjct: 313 DDYPVKKDDDEDAINSDLDDPDDLLDEEQGEDDAVGQVMLCTYDKVQRVKSKWKCVLKDG 372
Query: 387 IMHINNKDILFNKATGEFDF 406
I+ + K+ +F +T +F F
Sbjct: 373 ILTSDGKECVFPSSTIQFIF 392
>gi|344305167|gb|EGW35399.1| hypothetical protein SPAPADRAFT_58617 [Spathaspora passalidarum
NRRL Y-27907]
Length = 276
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 340 EPLNENDDDELDDVDQGEELNTQ--HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+ +N + DDE D EE Q ++L +DKV R K++WK LK+GI +I+ KD +F
Sbjct: 208 DDINSDLDDEFDSERSDEEDGDQEGQIMLCLYDKVQRIKNKWKSNLKEGIANIDGKDYVF 267
Query: 398 NKATGEFDF 406
+KATGE ++
Sbjct: 268 HKATGESEW 276
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + +Y +IEDVI+ R +F NN ES L EL+ IW K+ Q GV
Sbjct: 1 MSNAEASKLYETIIEDVINDSRQDFENNAIDESTLQELRKIWCEKLSQTGV 51
>gi|380011560|ref|XP_003689869.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 1 [Apis florea]
Length = 385
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 334 AEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNK 393
A ++EPLN +D++ D D + +T ++V+ Q+DK+TR++++WK LKDGIM+++ K
Sbjct: 315 ATTREEEPLN--SEDDVTDDDPADLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLSGK 372
Query: 394 DILFNKATGEFDF 406
D +F K G+ ++
Sbjct: 373 DYVFQKMNGDAEW 385
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MALSQTSVLKLYNTVIEDVISGVRESFIDEGVDEQVLQELKQIWETKLMSSKAV 54
>gi|50310187|ref|XP_455113.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644249|emb|CAG97820.1| KLLA0F00748p [Kluyveromyces lactis]
Length = 229
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 40/57 (70%), Gaps = 3/57 (5%)
Query: 350 LDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+D D+G ++N ++L +DKV R K++WKC LK+G++ I++KD F KA GE ++
Sbjct: 176 MDVEDEGTDVN---MMLCLYDKVLRVKNKWKCNLKEGVVTIDHKDFAFQKAQGESEW 229
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKM 46
M+ VY V+E VI+ VR EF ++G E L +L+ IW+MK+
Sbjct: 1 MSNIEASKVYETVLETVINDVRQEFEDSGVDEQTLQDLKRIWQMKL 46
>gi|398412714|ref|XP_003857675.1| hypothetical protein MYCGRDRAFT_29663, partial [Zymoseptoria
tritici IPO323]
gi|339477560|gb|EGP92651.1| hypothetical protein MYCGRDRAFT_29663 [Zymoseptoria tritici IPO323]
Length = 72
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 365 VLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+L +DKV R K++WKC LKDG+M + K+ +F+K GEF++
Sbjct: 31 ILCTYDKVQRVKNKWKCTLKDGVMSVGGKEWVFHKGMGEFEW 72
>gi|380011562|ref|XP_003689870.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 2 [Apis florea]
Length = 359
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 334 AEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNK 393
A ++EPLN +D++ D D + +T ++V+ Q+DK+TR++++WK LKDGIM+++ K
Sbjct: 289 ATTREEEPLN--SEDDVTDDDPADLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLSGK 346
Query: 394 DILFNKATGEFDF 406
D +F K G+ ++
Sbjct: 347 DYVFQKMNGDAEW 359
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MALSQTSVLKLYNTVIEDVISGVRESFIDEGVDEQVLQELKQIWETKLMSSKAV 54
>gi|307103811|gb|EFN52068.1| hypothetical protein CHLNCDRAFT_27230 [Chlorella variabilis]
Length = 80
Score = 55.1 bits (131), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 334 AEDDDDEPLNENDDDELDDVDQGEELNTQHL---VLAQFDKVTRTKSRWKCALKDGIMHI 390
A D PL N + + G+E++ L VL QF+KV R+KS+WK LKD I+ +
Sbjct: 5 AHDLQPSPLRHNPEPPQNVYLTGDEVDEASLANVVLGQFEKVQRSKSKWKVVLKDCILTL 64
Query: 391 NNKDILFNKATGEFDF 406
N +D L + TGE DF
Sbjct: 65 NGRDYLVRRCTGEMDF 80
>gi|328793106|ref|XP_003251828.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 1
[Apis mellifera]
Length = 384
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 334 AEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNK 393
A ++EPLN +D++ D D + +T ++V+ Q+DK+TR++++WK LKDGIM+++ K
Sbjct: 314 ATAREEEPLN--SEDDVTDDDPADLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLSGK 371
Query: 394 DILFNKATGEFDF 406
D +F K G+ ++
Sbjct: 372 DYVFQKMNGDAEW 384
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MALSQTSVLKLYNTVIEDVISGVRESFIDEGVDEQVLQELKQIWETKLMSSKAV 54
>gi|302499850|ref|XP_003011920.1| transcription factor TFIIA complex subunit Toa1, putative
[Arthroderma benhamiae CBS 112371]
gi|291175474|gb|EFE31280.1| transcription factor TFIIA complex subunit Toa1, putative
[Arthroderma benhamiae CBS 112371]
Length = 472
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 338 DDEPLNENDDDELDDV-----------DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDG 386
DD P+ ++DD++ + +QGE+ ++L +DKV R KS+WKC LKDG
Sbjct: 374 DDYPVKKDDDEDAINSDLDDPDDLLDEEQGEDDAVGQVMLCTYDKVQRVKSKWKCVLKDG 433
Query: 387 IMHINNKDILFNKATGEFDF 406
I+ + K+ +F +T +F F
Sbjct: 434 ILTSDGKECVFPSSTIQFIF 453
>gi|320164633|gb|EFW41532.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 339
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 343 NENDDDEL----DDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFN 398
E DDEL D+ + EE ++++L +KVTR ++RWK L+ GI+ I +D +F
Sbjct: 272 QEYKDDELLSDSDEEEAPEETGEKNMMLCTAEKVTRNRNRWKTTLRGGIVTIRGRDYVFR 331
Query: 399 KATGEFDF 406
ATGEF F
Sbjct: 332 TATGEFTF 339
>gi|383849463|ref|XP_003700364.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Megachile rotundata]
Length = 360
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 37/48 (77%)
Query: 359 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+T ++V+ Q+DK+TR++++WK LKDGIM+++ KD +F K G+ ++
Sbjct: 313 FDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLSGKDYVFQKMNGDAEW 360
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
M+ S T ++ Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MSLSQTSVLKLYNTVIEDVISGVRESFIDEGVDEQVLQELKQIWETKLMSSKAV 54
>gi|328793108|ref|XP_395730.3| PREDICTED: transcription initiation factor IIA subunit 1 isoform 2
[Apis mellifera]
Length = 358
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 334 AEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNK 393
A ++EPLN +D++ D D + +T ++V+ Q+DK+TR++++WK LKDGIM+++ K
Sbjct: 288 ATAREEEPLN--SEDDVTDDDPADLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLSGK 345
Query: 394 DILFNKATGEFDF 406
D +F K G+ ++
Sbjct: 346 DYVFQKMNGDAEW 358
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MALSQTSVLKLYNTVIEDVISGVRESFIDEGVDEQVLQELKQIWETKLMSSKAV 54
>gi|50427499|ref|XP_462362.1| DEHA2G18920p [Debaryomyces hansenii CBS767]
gi|49658032|emb|CAG90869.1| DEHA2G18920p [Debaryomyces hansenii CBS767]
Length = 272
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 337 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 396
D DE L DE D +G+ ++L +DKV R K++WK LK+G+ +IN +D +
Sbjct: 209 DLDEGLESEKSDEEDGDQEGQ------IMLCLYDKVQRVKNKWKSNLKEGVANINGRDYV 262
Query: 397 FNKATGEFDF 406
F KATGE ++
Sbjct: 263 FQKATGESEW 272
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ +Y +IE+VIS R +F ++G ES L +L+ IW K+ Q+GV
Sbjct: 1 MSNVEASKLYEAIIEEVISDSRQDFEDSGIDESTLQDLRKIWCEKLSQSGV 51
>gi|426223699|ref|XP_004006012.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 4 [Ovis
aries]
Length = 435
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD DV + + ++++ Q+DK+ R+K +WK LKDG+M +D +F
Sbjct: 369 EEDPLNSGDDVSEQDVP--DLFDMDNVIVCQYDKIHRSKDKWKFYLKDGVMCFGGRDYVF 426
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 427 AKAIGDAEW 435
>gi|413944875|gb|AFW77524.1| hypothetical protein ZEAMMB73_875019 [Zea mays]
Length = 119
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 32/41 (78%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGI 41
MA+S VYI VI+DVISKVR++F+ G G++VLNELQ +
Sbjct: 46 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQAV 86
>gi|448103235|ref|XP_004199990.1| Piso0_002549 [Millerozyma farinosa CBS 7064]
gi|359381412|emb|CCE81871.1| Piso0_002549 [Millerozyma farinosa CBS 7064]
Length = 273
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 337 DDDEPLNENDDDELDDVDQGEELNTQ--HLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 394
+D + +N + DD L+ EE Q ++L +D+V R +++WK LK+G+ +IN KD
Sbjct: 202 NDSDDINSDLDDGLESEKSDEEDADQEGQIMLCLYDRVQRVRNKWKSNLKEGVANINGKD 261
Query: 395 ILFNKATGEFDF 406
+F KATGE ++
Sbjct: 262 YVFQKATGESEW 273
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI----IDRT 56
M+ + T +Y +IE+VIS R +F ++G ES L EL+ IW K+ Q V +
Sbjct: 1 MSNAETSKLYEAIIEEVISDSRQDFEDSGIDESTLTELRKIWCEKLSQTSVANFSWDEEQ 60
Query: 57 SAPKQPAPGGPITPVHD 73
+ P + GGP+ P+ D
Sbjct: 61 NIPGSYSLGGPVPPIPD 77
>gi|448099401|ref|XP_004199139.1| Piso0_002549 [Millerozyma farinosa CBS 7064]
gi|359380561|emb|CCE82802.1| Piso0_002549 [Millerozyma farinosa CBS 7064]
Length = 272
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 337 DDDEPLNENDDDELDDVDQGEELNTQ--HLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 394
+D + +N + DD L+ EE Q ++L +D+V R +++WK LK+G+ +IN KD
Sbjct: 201 NDSDDINSDLDDGLESEKSDEEDADQEGQIMLCLYDRVQRVRNKWKSNLKEGVANINGKD 260
Query: 395 ILFNKATGEFDF 406
+F KATGE ++
Sbjct: 261 YVFQKATGESEW 272
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI----IDRT 56
M+ + T +Y +IE+VIS R +F ++G ES L+EL+ IW K+ Q V +
Sbjct: 1 MSNAETSKLYEAIIEEVISDSRQDFEDSGIDESTLSELRKIWCEKLSQTSVANFSWDEEQ 60
Query: 57 SAPKQPAPGGPI 68
+ P + GGP+
Sbjct: 61 NIPGTYSLGGPV 72
>gi|406607660|emb|CCH41131.1| TFIIA-alpha and beta-like factor, 1-like factor [Wickerhamomyces
ciferrii]
Length = 207
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L ++KV R K++WKC LKDG+ +IN +D F K TGE ++
Sbjct: 165 IILCLYEKVLRVKNKWKCNLKDGVANINGRDYAFAKGTGESEW 207
>gi|426223693|ref|XP_004006009.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 1 [Ovis
aries]
Length = 1170
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD DV + + ++++ Q+DK+ R+K +WK LKDG+M +D +F
Sbjct: 1104 EEDPLNSGDDVSEQDVP--DLFDMDNVIVCQYDKIHRSKDKWKFYLKDGVMCFGGRDYVF 1161
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 1162 AKAIGDAEW 1170
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+ D R S
Sbjct: 711 LYRSVIEDVIEGVRDLFAEEGVEEQVLKDLKQLWETKVLQSKATEDFFRNSVH------- 763
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ A ++ P
Sbjct: 764 --SPLFTLQLPHSLHQTLQSSAAALVIP 789
>gi|171695472|ref|XP_001912660.1| hypothetical protein [Podospora anserina S mat+]
gi|170947978|emb|CAP60142.1| unnamed protein product [Podospora anserina S mat+]
Length = 541
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 21/65 (32%)
Query: 363 HLVLAQFDKVTRTKSRW---------------------KCALKDGIMHINNKDILFNKAT 401
H++L +DKV R K++W KC LKDG++ +N K+ +F+KAT
Sbjct: 477 HMMLCMYDKVQRVKNKWCVSLLPRNLYNISDTNTLGYRKCTLKDGVLTVNGKEYVFHKAT 536
Query: 402 GEFDF 406
GE+++
Sbjct: 537 GEYEW 541
>gi|342883367|gb|EGU83880.1| hypothetical protein FOXB_05594 [Fusarium oxysporum Fo5176]
Length = 402
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Query: 305 VNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNE--NDDDELDDVDQGEELNTQ 362
+ E + P + PA D ++DDD+ +N +D +E D D ++
Sbjct: 299 LKEATRTSSVPTSRVAKGKQPAAYDGGDDDDEDDDDAINSDLDDPEEDRDDDDVDDEGLG 358
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 359 NIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 402
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ A G VY +I++V++ R +F +G ESVL EL+ W+ K+ Q V
Sbjct: 1 MSNPAVGNVYQAIIDEVVNSSRVDFEESGVEESVLEELRQGWQQKLTQLHV 51
>gi|426223697|ref|XP_004006011.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 3 [Ovis
aries]
Length = 1123
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD DV + + ++++ Q+DK+ R+K +WK LKDG+M +D +F
Sbjct: 1057 EEDPLNSGDDVSEQDVP--DLFDMDNVIVCQYDKIHRSKDKWKFYLKDGVMCFGGRDYVF 1114
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 1115 AKAIGDAEW 1123
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+ D R S
Sbjct: 711 LYRSVIEDVIEGVRDLFAEEGVEEQVLKDLKQLWETKVLQSKATEDFFRNSVH------- 763
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFPPTPL 98
+P+ L +P+ + ++ A + P
Sbjct: 764 --SPLFTLQLPHSLHQTLQSSAAHLYKVSVPF 793
>gi|354547630|emb|CCE44365.1| hypothetical protein CPAR2_401670 [Candida parapsilosis]
Length = 284
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R K++WK LK+GI +I+ KD +F+KATGE ++
Sbjct: 241 QIMLCLYDKVQRIKNKWKSNLKEGIANIDGKDYVFHKATGECEW 284
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + +Y +IEDVIS R +F N G E+ L EL+ IW K+ Q+ V
Sbjct: 1 MSNTEASKLYETIIEDVISDSRQDFENMGIDEATLQELRKIWCEKLSQSKV 51
>gi|296482566|tpg|DAA24681.1| TPA: STON1-GTF2A1L protein [Bos taurus]
Length = 388
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + + ++++ Q+DK+ R+K +WK LKDG+M +D +F
Sbjct: 322 EEDPLNSGDD--VSEQDVPDLFDMDNVIVCQYDKIHRSKDKWKFYLKDGVMCFGGRDYVF 379
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 380 AKAIGDAEW 388
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 11/114 (9%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+ D R S
Sbjct: 10 LYRSVIEDVIEGVRDLFAEEGVEEQVLKDLKQLWETKVLQSKATEDFFRNSVH------- 62
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPG 120
+P+ L +P+ + ++ A + P + G++ S PG
Sbjct: 63 --SPLFTLQLPHSLHQTLQSSAASFVIPAGRTRPSFTAAELGTSNSSASFTFPG 114
>gi|149237086|ref|XP_001524420.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451955|gb|EDK46211.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 314
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R K++WK LK+GI +I+ KD +F+KATGE ++
Sbjct: 271 QIMLCLYDKVQRIKNKWKLNLKEGIANIDGKDYVFHKATGECEW 314
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
M+ +Y ++EDVI+ R +F N G ES L EL+ IW K+ Q V
Sbjct: 1 MSNIEASKLYETIVEDVITDSRQDFENMGIDESTLQELRKIWCEKLSQTQVC 52
>gi|170651848|gb|ACB21701.1| TfIIA-L [Lutzomyia whitmani]
gi|170651852|gb|ACB21703.1| TfIIA-L [Lutzomyia whitmani]
gi|170651868|gb|ACB21711.1| TfIIA-L [Lutzomyia whitmani]
Length = 57
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 38/51 (74%), Gaps = 2/51 (3%)
Query: 340 EPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
EPLN DD + D D + +T ++V++Q+DK+TR++++WK LKDGIM+I
Sbjct: 9 EPLNSEDD--VTDEDASDLFDTDNVVVSQYDKITRSRNKWKFYLKDGIMNI 57
>gi|170651810|gb|ACB21682.1| TfIIA-L [Lutzomyia intermedia]
Length = 57
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 340 EPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
EPLN DD + D D + +T ++V+ Q+DKVTR++++WK LKDGIM+I
Sbjct: 9 EPLNSEDD--VTDEDASDLFDTDNVVVCQYDKVTRSRNKWKFYLKDGIMNI 57
>gi|71033955|ref|XP_766619.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353576|gb|EAN34336.1| hypothetical protein, conserved [Theileria parva]
Length = 210
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 10/103 (9%)
Query: 310 NIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQF 369
N V+T +P + + S+ +++ +D+ D ++ +D +LDD EE T LV+
Sbjct: 112 NPVSTESPKNNKDSSNLEKAGDNSEKDNPDTDISISDISDLDD----EEPETDDLVIGML 167
Query: 370 DKVTRTKSR------WKCALKDGIMHINNKDILFNKATGEFDF 406
DKVTR S+ WK LK GIM INN +I F+ GEF+F
Sbjct: 168 DKVTRPSSKKFGPPLWKLKLKYGIMQINNVEIPFDTLEGEFEF 210
>gi|122692319|ref|NP_001073698.1| TFIIA-alpha and beta-like factor [Bos taurus]
gi|75773523|gb|AAI05173.1| STON1-GTF2A1L readthrough transcript [Bos taurus]
Length = 388
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + + ++++ Q+DK+ R+K +WK LKDG+M +D +F
Sbjct: 322 EEDPLNSGDD--VSEQDVPDLFDMDNVIVCQYDKIHRSKDKWKFYLKDGVMCFGGRDYVF 379
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 380 AKAIGDAEW 388
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+
Sbjct: 10 LYRSVIEDVIEGVRDLFAEEGVEEQVLKDLKQLWETKVLQS 50
>gi|91091108|ref|XP_969067.1| PREDICTED: similar to TFIIA [Tribolium castaneum]
gi|270013142|gb|EFA09590.1| hypothetical protein TcasGA2_TC011708 [Tribolium castaneum]
Length = 312
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%)
Query: 359 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+T ++V+ Q+DK+ R +++WK LKDGIM+++ +D +F KA G+ ++
Sbjct: 265 FDTDNIVVCQYDKIIRNRNKWKFYLKDGIMNLSGQDYVFQKANGDAEW 312
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKM 46
+ ++ +Y VI+DVIS VR+ F+ +G E VL EL+ WE K+
Sbjct: 5 LCKTSVLRIYQEVIDDVISGVREIFLEDGVDEQVLQELKQTWETKL 50
>gi|254568122|ref|XP_002491171.1| TFIIA large subunit [Komagataella pastoris GS115]
gi|238030968|emb|CAY68891.1| TFIIA large subunit [Komagataella pastoris GS115]
gi|328352308|emb|CCA38707.1| TFIIA-alpha and beta-like factor , 1-like factor [Komagataella
pastoris CBS 7435]
Length = 240
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 33/43 (76%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +D+V R +++WKC L+DGI++++ +D F KATGE ++
Sbjct: 198 IMLCLYDRVQRVRNKWKCNLRDGIVNMDGRDYTFQKATGESEW 240
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ S +Y +IE+V ++ R +F ++G ES L +L+ IW K+ ++GV
Sbjct: 1 MSNSEAARLYESIIEEVTAESRQDFEDSGIDESTLQDLRKIWRNKLSESGV 51
>gi|164660676|ref|XP_001731461.1| hypothetical protein MGL_1644 [Malassezia globosa CBS 7966]
gi|159105361|gb|EDP44247.1| hypothetical protein MGL_1644 [Malassezia globosa CBS 7966]
Length = 217
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R K++WKC L+DG+ I +D LF+K G +
Sbjct: 164 MILCLYDKVQRVKNKWKCVLRDGVASIGGRDYLFSKCNGYVSY 206
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + + +I+DVI+ VR +F + G + VL ELQ WE K++ V
Sbjct: 1 MSNRVVSVTFRHIIDDVIANVRQDFEDMGIEKEVLEELQRSWEAKLVATQV 51
>gi|448529684|ref|XP_003869892.1| Toa1 protein [Candida orthopsilosis Co 90-125]
gi|380354246|emb|CCG23759.1| Toa1 protein [Candida orthopsilosis]
Length = 282
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 33/44 (75%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R K++WK LK+G+ +I+ KD +F+KATGE ++
Sbjct: 239 QIMLCLYDKVQRIKNKWKSNLKEGVANIDGKDYVFHKATGECEW 282
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + +Y +IEDVIS R +F N G E+ L EL+ IW K+ Q+ V
Sbjct: 1 MSNTEASRLYETIIEDVISDSRQDFENMGIDEATLQELRKIWCEKLSQSKV 51
>gi|68470856|ref|XP_720435.1| hypothetical protein CaO19.2682 [Candida albicans SC5314]
gi|68471314|ref|XP_720205.1| hypothetical protein CaO19.10197 [Candida albicans SC5314]
gi|46442061|gb|EAL01353.1| hypothetical protein CaO19.10197 [Candida albicans SC5314]
gi|46442302|gb|EAL01592.1| hypothetical protein CaO19.2682 [Candida albicans SC5314]
Length = 275
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + T +Y VIEDVI+ R +F NNG ES L EL+ IW K+ Q+GV
Sbjct: 1 MSNTETSKLYESVIEDVINDSRQDFENNGIDESTLQELRRIWCEKLTQSGV 51
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+ L FDKV R K++WK L GI +IN KD +F+KA GE ++
Sbjct: 232 NFALCLFDKVQRIKNKWKSTLVAGIANINGKDYVFHKANGESEW 275
>gi|170651798|gb|ACB21676.1| TfIIA-L [Lutzomyia intermedia]
gi|170651800|gb|ACB21677.1| TfIIA-L [Lutzomyia intermedia]
gi|170651804|gb|ACB21679.1| TfIIA-L [Lutzomyia intermedia]
gi|170651806|gb|ACB21680.1| TfIIA-L [Lutzomyia intermedia]
gi|170651808|gb|ACB21681.1| TfIIA-L [Lutzomyia intermedia]
gi|170651812|gb|ACB21683.1| TfIIA-L [Lutzomyia intermedia]
gi|170651814|gb|ACB21684.1| TfIIA-L [Lutzomyia intermedia]
gi|170651816|gb|ACB21685.1| TfIIA-L [Lutzomyia intermedia]
gi|170651818|gb|ACB21686.1| TfIIA-L [Lutzomyia intermedia]
gi|170651820|gb|ACB21687.1| TfIIA-L [Lutzomyia intermedia]
gi|170651822|gb|ACB21688.1| TfIIA-L [Lutzomyia intermedia]
gi|170651824|gb|ACB21689.1| TfIIA-L [Lutzomyia intermedia]
gi|170651826|gb|ACB21690.1| TfIIA-L [Lutzomyia intermedia]
gi|170651828|gb|ACB21691.1| TfIIA-L [Lutzomyia intermedia]
gi|170651830|gb|ACB21692.1| TfIIA-L [Lutzomyia intermedia]
gi|170651832|gb|ACB21693.1| TfIIA-L [Lutzomyia intermedia]
gi|170651834|gb|ACB21694.1| TfIIA-L [Lutzomyia intermedia]
gi|170651836|gb|ACB21695.1| TfIIA-L [Lutzomyia intermedia]
gi|170651838|gb|ACB21696.1| TfIIA-L [Lutzomyia intermedia]
gi|170651840|gb|ACB21697.1| TfIIA-L [Lutzomyia intermedia]
gi|170651842|gb|ACB21698.1| TfIIA-L [Lutzomyia intermedia]
gi|170651844|gb|ACB21699.1| TfIIA-L [Lutzomyia whitmani]
gi|170651846|gb|ACB21700.1| TfIIA-L [Lutzomyia whitmani]
gi|170651850|gb|ACB21702.1| TfIIA-L [Lutzomyia whitmani]
gi|170651854|gb|ACB21704.1| TfIIA-L [Lutzomyia whitmani]
gi|170651856|gb|ACB21705.1| TfIIA-L [Lutzomyia whitmani]
gi|170651858|gb|ACB21706.1| TfIIA-L [Lutzomyia whitmani]
gi|170651860|gb|ACB21707.1| TfIIA-L [Lutzomyia whitmani]
gi|170651862|gb|ACB21708.1| TfIIA-L [Lutzomyia whitmani]
gi|170651866|gb|ACB21710.1| TfIIA-L [Lutzomyia whitmani]
gi|170651870|gb|ACB21712.1| TfIIA-L [Lutzomyia whitmani]
gi|170651872|gb|ACB21713.1| TfIIA-L [Lutzomyia whitmani]
gi|170651874|gb|ACB21714.1| TfIIA-L [Lutzomyia whitmani]
gi|170651876|gb|ACB21715.1| TfIIA-L [Lutzomyia whitmani]
gi|170651878|gb|ACB21716.1| TfIIA-L [Lutzomyia whitmani]
gi|170651880|gb|ACB21717.1| TfIIA-L [Lutzomyia whitmani]
gi|170651882|gb|ACB21718.1| TfIIA-L [Lutzomyia whitmani]
gi|170651884|gb|ACB21719.1| TfIIA-L [Lutzomyia whitmani]
Length = 57
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 340 EPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
EPLN DD + D D + +T ++V+ Q+DK+TR++++WK LKDGIM+I
Sbjct: 9 EPLNSEDD--VTDEDASDLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNI 57
>gi|170651864|gb|ACB21709.1| TfIIA-L [Lutzomyia whitmani]
Length = 57
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 340 EPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
EPLN DD + D D + +T ++V+ Q+DK+TR++++WK LKDGIM+I
Sbjct: 9 EPLNSEDD--VTDEDASDPFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNI 57
>gi|313235126|emb|CBY24998.1| unnamed protein product [Oikopleura dioica]
gi|313246320|emb|CBY35241.1| unnamed protein product [Oikopleura dioica]
Length = 331
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 332 DAAEDDDDEPLNE---NDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIM 388
D D D E ++E N DD E + +++++ +DK+TR K++WK LK+GIM
Sbjct: 254 DEDADSDTEHIDEPALNSDDNCPSPSADETFDCENILICMYDKITRNKNQWKIILKEGIM 313
Query: 389 HINNKDILFNKATGE 403
++ D +F KA+G+
Sbjct: 314 NLRGVDHVFWKASGD 328
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 6 TGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQP 62
T +Y VI DVI RD F++ G E+ L ++Q +W+ K+ + + APK P
Sbjct: 18 TAGLYDSVINDVIKACRDAFIDEGYDEASLADVQRLWKRKLAETKAV-----APKLP 69
>gi|406694572|gb|EKC97896.1| general RNA polymerase II transcription factor [Trichosporon asahii
var. asahii CBS 8904]
Length = 200
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATG 402
+V +DKV R K++WK KDG++HIN +D LF K G
Sbjct: 142 IVFCVYDKVQRVKNKWKTVFKDGMIHINGRDYLFAKCQG 180
>gi|399949624|gb|AFP65282.1| hypothetical protein CMESO_83 [Chroomonas mesostigmatica CCMP1168]
Length = 280
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 347 DDELD-DVDQG-EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 404
++EL+ QG +E + ++ +LA +KV R ++W+ LKDGI+H+N KD LFN EF
Sbjct: 219 EEELESQFSQGIDEQSPKNFILALSEKVNRRNTKWRVILKDGILHMNEKDFLFNTCKCEF 278
>gi|403221450|dbj|BAM39583.1| kinesin [Theileria orientalis strain Shintoku]
Length = 926
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 10/85 (11%)
Query: 328 VTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSR------WKC 381
+ ++ AEDD D L+ ++ +LDD +E T LV+ DKVTR S+ WK
Sbjct: 846 IEESKEAEDDPDTELSISEISDLDD----DEPETNDLVIGMLDKVTRPSSKKFGPPLWKV 901
Query: 382 ALKDGIMHINNKDILFNKATGEFDF 406
LK GIM +NN +I F+ GEF+F
Sbjct: 902 KLKYGIMQVNNVEIPFDTLEGEFEF 926
>gi|126274465|ref|XP_001387553.1| transcription initiation factor TFIIA large subunit (TOA1)
[Scheffersomyces stipitis CBS 6054]
gi|126213423|gb|EAZ63530.1| transcription initiation factor TFIIA large subunit (TOA1)
[Scheffersomyces stipitis CBS 6054]
Length = 249
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
++L +DKV R K++WK LK+GI +I+ KD +F+KATGE ++
Sbjct: 206 QIMLCLYDKVQRIKNKWKSNLKEGIANIDGKDYVFHKATGESEW 249
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + +Y +IEDVI+ R +F ++G ES L +L+ IW K+ QA V
Sbjct: 1 MSNNEASKLYETIIEDVINDSRQDFEDSGIDESTLQDLRRIWCEKLSQAQV 51
>gi|403359039|gb|EJY79177.1| General transcription factor IIA, 1 [Oxytricha trifallax]
Length = 348
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 360 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+ ++ + AQ++KV RTK ++KC KD I+H+N KD + K T + ++
Sbjct: 302 DCKNYIAAQYEKVQRTKQKYKCIFKDAIIHLNGKDFVVKKFTADIEY 348
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQ 48
M T+A Y+ V+ +VI K R +F++ G E VL +L+ IWE K+ Q
Sbjct: 1 MTTNAKDF-YLAVVNEVIEKNRQQFISEGVSEDVLEKLRKIWEEKINQ 47
>gi|401885134|gb|EJT49261.1| ribosomal protein [Trichosporon asahii var. asahii CBS 2479]
Length = 562
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 364 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATG 402
+V +DKV R K++WK KDG++HIN +D LF K G
Sbjct: 142 IVFCVYDKVQRVKNKWKTVFKDGMIHINGRDYLFAKCQG 180
>gi|240274639|gb|EER38155.1| transcription factor TFIIA complex subunit Toa1 [Ajellomyces
capsulatus H143]
gi|325090973|gb|EGC44283.1| transcription factor TFIIA complex subunit Toa1 [Ajellomyces
capsulatus H88]
Length = 425
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 331 NDAAEDDDDEPLNENDDDE---LDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGI 387
N E+ D++ +N + DD LDD + G++ Q ++L +DKV R KS+WKC LKDGI
Sbjct: 360 NTGREEADEDAINSDLDDSEDMLDDSNDGDDAVGQ-VMLCTYDKVQRVKSKWKCTLKDGI 418
Query: 388 MHINNKD 394
+ K+
Sbjct: 419 LTSGGKE 425
>gi|50548421|ref|XP_501680.1| YALI0C10472p [Yarrowia lipolytica]
gi|49647547|emb|CAG81987.1| YALI0C10472p [Yarrowia lipolytica CLIB122]
Length = 249
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 328 VTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQH--LVLAQFDKVTRTKSRWKCALKD 385
V Q D AEDD+DE ++ DD D++ E+ + H +L +D++ R K+ K +D
Sbjct: 169 VPQTDGAEDDEDELNSDLDDSSDDNLSGNEDEDDNHGNTILCVYDRIHRVKNNRKFTFRD 228
Query: 386 GIMHINNKDILFNKATGEFDF 406
GI+++N KD +F +ATGE ++
Sbjct: 229 GIVNVNRKDYVFGRATGESEW 249
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKM 46
M+ G +Y +VI+ VI++ RD+F NG E L EL+ W+ K+
Sbjct: 1 MSNQVVGNIYQKVIDAVINECRDDFQENGIDEMTLQELKEGWQTKL 46
>gi|225561537|gb|EEH09817.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 424
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 331 NDAAEDDDDEPLNENDDDE---LDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGI 387
N E+ D++ +N + DD LDD + G++ Q ++L +DKV R KS+WKC LKDGI
Sbjct: 359 NTGREEADEDAINSDLDDSEDMLDDSNDGDDAVGQ-VMLCTYDKVQRVKSKWKCTLKDGI 417
Query: 388 MHINNKD 394
+ K+
Sbjct: 418 LTSGGKE 424
>gi|428673418|gb|EKX74331.1| conserved hypothetical protein [Babesia equi]
Length = 223
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 37/186 (19%)
Query: 256 RQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTP 315
+Q + N+ + A + KIP+ I D ++ + N+++ + ++++ +
Sbjct: 40 KQSWIENLNKRLNAVKTETDAKIPRTSSFIQDSFES--KSENVHDRESSSDDEFLDADVE 97
Query: 316 A---------PNDIQASTP-----------AVVTQNDAAEDDDDEPLNENDDDELDDVD- 354
+ P D TP A T+ D+ ++ + +P + DD +DD D
Sbjct: 98 SVTVSDLKSLPQDTHVETPIAKSERTEAIFASETKEDSNKEVESDPKSTRDDKNVDDSDV 157
Query: 355 --------QGEELNTQHLVLAQFDKVTRTKSR------WKCALKDGIMHINNKDILFNKA 400
+ +E +Q +++ DK+TR S+ WK LK GIM IN+ +I F+
Sbjct: 158 SFSDVSDLEDQEPESQDMIIGILDKITRPSSKKFGPPLWKLKLKHGIMQINDVEIPFDSL 217
Query: 401 TGEFDF 406
GEF+F
Sbjct: 218 QGEFEF 223
>gi|326505918|dbj|BAJ91198.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 321
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 354 DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+ GEE + +++V +DKV R K++WK +DG+ +N KD LF KAT + ++
Sbjct: 270 EDGEEAD-ENIVFCVYDKVNRVKNKWKMVFRDGMAKVNGKDYLFAKATCDVEW 321
>gi|387593838|gb|EIJ88862.1| hypothetical protein NEQG_00681 [Nematocida parisii ERTm3]
gi|387595142|gb|EIJ92768.1| hypothetical protein NEPG_02459 [Nematocida parisii ERTm1]
Length = 175
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D + ++E L+ ND E D D E T++++L FDKVTR K + +C LK G +
Sbjct: 100 QYDGLPEGNEEELDSNDLSE-SDCDIESEEPTKNVMLCLFDKVTRVKDKRRCTLKHGFLT 158
Query: 390 INNKDILFNKATGEFDF 406
I D FN A G+ ++
Sbjct: 159 IGRTDYTFNVANGDLEW 175
>gi|241954470|ref|XP_002419956.1| transcription factor IIA (TFIIA) subunit alpha, putative [Candida
dubliniensis CD36]
gi|223643297|emb|CAX42171.1| transcription factor IIA (TFIIA) subunit alpha, putative [Candida
dubliniensis CD36]
Length = 268
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ T +Y VIEDVI+ R +F NNG ES L EL+ IW K+ Q+GV
Sbjct: 1 MSNIETSKLYESVIEDVINDSRQDFENNGIDESTLQELRRIWCEKLTQSGV 51
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+ L FDKV R K++WK L GI +IN KD +F+KA GE ++
Sbjct: 225 NFALCLFDKVQRIKNKWKSTLVAGIANINGKDYVFHKANGESEW 268
>gi|238881539|gb|EEQ45177.1| hypothetical protein CAWG_03491 [Candida albicans WO-1]
Length = 275
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + +Y VIEDVI+ R +F NNG ES L EL+ IW K+ Q+GV
Sbjct: 1 MSNTEISKLYESVIEDVINDSRQDFENNGIDESTLQELRRIWCEKLTQSGV 51
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+ L FDKV R K++WK L GI +IN KD +F+KA GE ++
Sbjct: 232 NFALCLFDKVQRIKNKWKSTLVAGIANINGKDYVFHKANGESEW 275
>gi|378756235|gb|EHY66260.1| hypothetical protein NERG_00956 [Nematocida sp. 1 ERTm2]
Length = 175
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 389
Q D + ++E L+ ND E D D E T++++L FDKVTR K + +C LK G +
Sbjct: 100 QYDGLPEGNEEELDSNDLSE-SDCDIESEEPTKNVMLCLFDKVTRVKDKRRCTLKHGFLT 158
Query: 390 INNKDILFNKATGEFDF 406
I D FN A G+ ++
Sbjct: 159 IGRTDYTFNVANGDLEW 175
>gi|170651802|gb|ACB21678.1| TfIIA-L [Lutzomyia intermedia]
Length = 57
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
++EPLN DD + D + +T ++V+ Q+DK+TR++++WK LKDGIM+I
Sbjct: 7 EEEPLNSEDD--VTDEGASDLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNI 57
>gi|340713530|ref|XP_003395295.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 4 [Bombus terrestris]
Length = 333
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MALSQTTVLKLYNTVIEDVISGVRESFIDEGVDEQVLQELKQIWETKLMSSKAV 54
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 47/203 (23%)
Query: 232 IPQQDGAGDAMSEIFELEV--SEFPGRQDS------VTTANREIFANLASSSVK------ 277
+P Q G DA + ++V S G Q V TA + ANLAS+ ++
Sbjct: 150 LPPQTGVPDAPLRVLTIQVPASAIQGNQLHTILTGPVITAAMGLPANLASTLLQQHVNST 209
Query: 278 --------------IPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQAS 323
I QLDGP+ D ++D D +
Sbjct: 210 LQGQATLTPLQLNNIAQLDGPLGDS-----------------SDDDEEEEEEDNEDEEED 252
Query: 324 TPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCAL 383
+ +EPL N +D++ D D + +T ++V+ Q+DK+TR++++WK L
Sbjct: 253 LDDKEEDENDEAAAREEPL--NSEDDVTDDDPADLFDTDNVVVCQYDKITRSRNKWKFYL 310
Query: 384 KDGIMHINNKDILFNKATGEFDF 406
KDGIM++N KD +F K G+ ++
Sbjct: 311 KDGIMNLNGKDYVFQKMNGDAEW 333
>gi|301769485|ref|XP_002920171.1| PREDICTED: mucin-5AC-like [Ailuropoda melanoleuca]
Length = 2878
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 87 PTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNST 132
P++ +L PL P PLP S PLP STPLP S PLP +A ST
Sbjct: 1999 PSSTLLPSSAPL--PSSVPLPSSAPLPSSTPLPSSAPLPSSAAPST 2042
Score = 46.2 bits (108), Expect = 0.028, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 95 PTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDY 142
P+ P PLP S PLP S PLP STPLP +A + P+ + Y
Sbjct: 1999 PSSTLLPSSAPLPSSVPLPSSAPLPSSTPLPSSAPLPSSAAPSTRTCY 2046
Score = 43.5 bits (101), Expect = 0.17, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 77 PYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGT 127
PY + +P E + + P PLP S PLP S PLP S PLP +
Sbjct: 1927 PYLTSPTTRSPAPESTSVLSTVPLPSSAPLPSSAPLPSSVPLPSSVPLPSS 1977
>gi|344291826|ref|XP_003417631.1| PREDICTED: stonin-1 [Loxodonta africana]
Length = 1079
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI +VR+ F G E VL +L+ +WE K++Q+ D R S
Sbjct: 726 LYRSVIEDVIERVRNLFAEEGIEEQVLKDLKQLWETKILQSKATDDFFRNSIH------- 778
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFPP 95
+P+ L +P+ + +T A ++ PP
Sbjct: 779 --SPLFTLQLPHGLHQTLQTSAAPLVIPP 805
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 370 DKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+KV R K++WK LKDG+M KD +F KA G+ ++
Sbjct: 1043 EKVHRNKNKWKFYLKDGVMCFGGKDYVFAKAVGDAEW 1079
>gi|390360055|ref|XP_003729621.1| PREDICTED: uncharacterized protein LOC100888480
[Strongylocentrotus purpuratus]
Length = 171
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPG 65
+Y VI+DVI+ VR+ F++ G E VL +L+ IWE K+IQ+ ID P Q A G
Sbjct: 11 LYKSVIDDVINNVREAFLDEGVEEPVLQDLKQIWESKLIQSRA-IDLAQKPPQQAAG 66
>gi|313217437|emb|CBY38533.1| unnamed protein product [Oikopleura dioica]
Length = 802
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 27/36 (75%)
Query: 361 TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 396
T + ++ Q+DK+ R K+RW+ LKDGIMH++ +D +
Sbjct: 370 TDNQIVCQYDKIQRVKNRWRFCLKDGIMHLHGRDFV 405
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKM 46
+Y +I+DVIS VRD+F+N ESVL++L +W K+
Sbjct: 14 LYNDIIKDVISAVRDDFMNESIDESVLDDLNKLWLKKL 51
>gi|443911024|gb|ELU35575.1| TFIIA domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 100
Score = 48.9 bits (115), Expect = 0.005, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 368 QFDKVTRTKSRWKCALKDGIMHINNKDILFNKATG 402
+ +V R K++WKC LKDG++H+N KD LF K G
Sbjct: 14 RLSQVQRVKNKWKCVLKDGMIHVNGKDYLFMKCNG 48
>gi|440494088|gb|ELQ76500.1| RNA polymerase II transcription initiation factor TFIIA, large
chain [Trachipleistophora hominis]
Length = 122
Score = 48.1 bits (113), Expect = 0.008, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 340 EPLNENDD--DELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
EP+ E+ D DD+ +G+ NTQ+ ++ +DKVT++K +W+ K G ++I N D F
Sbjct: 57 EPIVESASCSDSEDDI-KGK--NTQNFMMCLYDKVTKSKYKWRVNFKQGFLNIGNSDYAF 113
Query: 398 NKATGEFDF 406
+ G+ D+
Sbjct: 114 SLGQGDLDW 122
>gi|21220728|ref|NP_626507.1| multidomain-containing protein family [Streptomyces coelicolor
A3(2)]
gi|6469244|emb|CAB61705.1| putative multi-domain regulatory protein [Streptomyces coelicolor
A3(2)]
Length = 1334
Score = 48.1 bits (113), Expect = 0.008, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 49/136 (36%), Gaps = 12/136 (8%)
Query: 58 APKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 117
A PAPG P GT P + + P TP PG+ P PGSTP
Sbjct: 383 AGTTPAPG---------TAPAPGTA---GPARDTSYAPGTAPVAGTTPAPGTAPAPGSTP 430
Query: 118 LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
PG+ P PGTA G PAS +G +S P PR
Sbjct: 431 APGTVPAPGTAPAPGPQPADGRRPVTGPASGTGPGAATPPEAAAAASAGSAPSPAPEGPR 490
Query: 178 PPLSVDVNVAYVEGRD 193
P ++ + GRD
Sbjct: 491 PRGNLRARLTSFVGRD 506
>gi|344249722|gb|EGW05826.1| Stonin-2 [Cricetulus griseus]
Length = 1216
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 874 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 917
>gi|449015336|dbj|BAM78738.1| similar to transcription factor IIA large subunit [Cyanidioschyzon
merolae strain 10D]
Length = 198
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 345 NDDDELDDVDQGEELNTQHLVLAQFDKV----TRTKSRWKCALKDGIMHINNKDILFNKA 400
+DDDE+ V E T + VL+Q+++V T + W+ L+D ++HIN +D+L N+
Sbjct: 133 DDDDEISQVAGQPEPETANYVLSQYERVLAPSTNKQRIWRVFLRDAMVHINGQDLLLNQL 192
Query: 401 TGEFDF 406
+FD+
Sbjct: 193 QCQFDW 198
>gi|396081097|gb|AFN82716.1| transcription initiation factor TFIIA-like protein [Encephalitozoon
romaleae SJ-2008]
Length = 157
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 307 EDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLN-ENDDDELDDVDQGEELNTQHLV 365
E Y P+ + + D +D E L+ + D E+ G++ N + +
Sbjct: 61 EGYRGYERPSEGRVNGFNGKTTVEKDVGMFEDYESLSASSGDSEI----IGKKDNVGNCM 116
Query: 366 LAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+ + KV +K +WKC K G + I N D +FN A GE ++
Sbjct: 117 VCLYVKVNMSKGKWKCTFKQGFISIGNIDFVFNSAQGELEW 157
>gi|429965781|gb|ELA47778.1| hypothetical protein VCUG_00739 [Vavraia culicis 'floridensis']
Length = 120
Score = 47.8 bits (112), Expect = 0.010, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 351 DDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
D D+ + NTQ+ ++ +DKVT++K +W+ K G ++I N D F+ G+ D+
Sbjct: 65 DSEDEIKGKNTQNFMMCLYDKVTKSKYKWRVNFKQGFLNIGNSDYAFSLGQGDLDW 120
>gi|410954749|ref|XP_003984024.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 2 [Felis
catus]
Length = 1182
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSR-WKCALKDGIM 388
Q D E+D PLN DD DV + +T ++++ Q+DKV + R WK LKDG+M
Sbjct: 1110 QIDVVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKVPYSPFRLWKFYLKDGVM 1164
Query: 389 HINNKDILFNKATGEFDF 406
+D +F KA G+ ++
Sbjct: 1165 CFGGRDYVFAKAIGDAEW 1182
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI VRD F G E VL L+ +WE K++Q+ D R S
Sbjct: 714 LYRSVIEDVIEGVRDLFAEEGIEEQVLKVLKQLWETKVLQSKATEDFFRNSTH------- 766
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFPP-TPLQTPIQTPLPGSTPLPGSTPLPG 120
+P+ L +P + ++ TA ++ P PL + L S G T LPG
Sbjct: 767 --SPMFTLQLPNSLHQTLQSSTASLVIPAGRPLASFTTAELGASNSSAGFT-LPG 818
>gi|410954755|ref|XP_003984027.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 5 [Felis
catus]
Length = 444
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSR-WKCALKDGIM 388
Q D E+D PLN DD DV + +T ++++ Q+DKV + R WK LKDG+M
Sbjct: 372 QIDVVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKVPYSPFRLWKFYLKDGVM 426
Query: 389 HINNKDILFNKATGEFDF 406
+D +F KA G+ ++
Sbjct: 427 CFGGRDYVFAKAIGDAEW 444
>gi|410954751|ref|XP_003984025.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 3 [Felis
catus]
Length = 478
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI VRD F G E VL L+ +WE K++Q+ D R S
Sbjct: 10 LYRSVIEDVIEGVRDLFAEEGIEEQVLKVLKQLWETKVLQSKATEDFFRNSTH------- 62
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFPP-TPLQTPIQTPLPGSTPLPGSTPLPG 120
+P+ L +P + ++ TA ++ P PL + L S G T LPG
Sbjct: 63 --SPMFTLQLPNSLHQTLQSSTASLVIPAGRPLASFTTAELGASNSSAGFT-LPG 114
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSR-WKCALKDGIM 388
Q D E+D PLN DD DV + +T ++++ Q+DKV + R WK LKDG+M
Sbjct: 406 QIDVVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKVPYSPFRLWKFYLKDGVM 460
Query: 389 HINNKDILFNKATGEFDF 406
+D +F KA G+ ++
Sbjct: 461 CFGGRDYVFAKAIGDAEW 478
>gi|440468274|gb|ELQ37443.1| hypothetical protein OOU_Y34scaffold00594g28 [Magnaporthe oryzae
Y34]
gi|440486307|gb|ELQ66188.1| hypothetical protein OOW_P131scaffold00420g27 [Magnaporthe oryzae
P131]
Length = 406
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + G VY ++I+ V+ R +F +NG GES +NELQ +W+ K+ G
Sbjct: 1 MSNAVVGTVYEQIIKGVMEASRTDFEDNGFGESEINELQQVWQQKLTTMGA 51
>gi|389632973|ref|XP_003714139.1| hypothetical protein MGG_01235 [Magnaporthe oryzae 70-15]
gi|351646472|gb|EHA54332.1| hypothetical protein MGG_01235 [Magnaporthe oryzae 70-15]
Length = 407
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + G VY ++I+ V+ R +F +NG GES +NELQ +W+ K+ G
Sbjct: 1 MSNAVVGTVYEQIIKGVMEASRTDFEDNGFGESEINELQQVWQQKLTTMGA 51
>gi|410954753|ref|XP_003984026.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 4 [Felis
catus]
Length = 1135
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 330 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSR-WKCALKDGIM 388
Q D E+D PLN DD DV + +T ++++ Q+DKV + R WK LKDG+M
Sbjct: 1063 QIDVVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKVPYSPFRLWKFYLKDGVM 1117
Query: 389 HINNKDILFNKATGEFDF 406
+D +F KA G+ ++
Sbjct: 1118 CFGGRDYVFAKAIGDAEW 1135
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID 54
+Y VIEDVI VRD F G E VL L+ +WE K++Q+ D
Sbjct: 714 LYRSVIEDVIEGVRDLFAEEGIEEQVLKVLKQLWETKVLQSKATED 759
>gi|195146200|ref|XP_002014075.1| GL24482 [Drosophila persimilis]
gi|194103018|gb|EDW25061.1| GL24482 [Drosophila persimilis]
Length = 177
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ IW K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQIWRNKLLASKAV 54
>gi|428181881|gb|EKX50743.1| hypothetical protein GUITHDRAFT_103334 [Guillardia theta CCMP2712]
Length = 249
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 360 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHI----NNKDILFNKATGEFDF 406
+T +L+L Q++KV+RTK++WK LK G+M + +D +F K + +F
Sbjct: 197 STHNLILCQYEKVSRTKNKWKAQLKFGVMTLAINDGGRDFVFKKGNSDMNF 247
>gi|349802591|gb|AEQ16768.1| putative tfiiaa b-2 protein [Pipa carvalhoi]
Length = 170
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MATSA +Y VIEDVI+ VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 1 MATSANANPVPKLYRSVIEDVINDVRELFLDEGVDEQVLLELKTLWESKLMQSKAV 56
>gi|38492543|pdb|1NVP|B Chain B, Human TfiiaTBPDNA COMPLEX
Length = 57
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 12 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 55
>gi|328872637|gb|EGG21004.1| transcription factor IIA [Dictyostelium fasciculatum]
Length = 298
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKM 46
+ AT VY +I+DVI +R EF+N G +S++ ELQ +WE ++
Sbjct: 2 SGATSSVYRHIIDDVIRCIRVEFLNEGLDDSIIMELQNMWETRL 45
>gi|74145967|dbj|BAE24208.1| unnamed protein product [Mus musculus]
Length = 297
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
Query: 1 MATSA---TG-MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
MA SA TG +Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+
Sbjct: 1 MANSANTNTGPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQS 53
>gi|393220362|gb|EJD05848.1| hypothetical protein FOMMEDRAFT_79779, partial [Fomitiporia
mediterranea MF3/22]
Length = 823
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 90/194 (46%), Gaps = 39/194 (20%)
Query: 34 VLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILF 93
V+ E + + M +Q ++ D + P APGG +EG TP ++ F
Sbjct: 364 VMTEARNLRNMIAVQTPLLGDENT-PLHTAPGG--------GTGFEGA----TPRHQVAF 410
Query: 94 PPTPLQTPI-QTPL-PGSTP---LPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPASD 148
P PL TP Q L PG+TP PG+TPL TPL DN + N P+G+ AS
Sbjct: 411 TPNPLATPARQDSLGPGATPRSEFPGATPL--RTPL---RDNLSLN-PSGA------ASS 458
Query: 149 SGGNTEAKSGNGRPSSYMPPPPSPWMN-PRPPLSVDVNVAYVEGRDEADRGTSHQPLTQD 207
G + G G SS S +MN PRP + ++ V E +DE+ T+ P+ +D
Sbjct: 459 VGDTPRERRGRGGMSSL----KSAFMNLPRPENNFELLVPEDEEQDES---TAAVPMEED 511
Query: 208 FFTMSAG-KRKRED 220
A KR RE+
Sbjct: 512 AAERDARLKRLREE 525
>gi|70996176|ref|XP_752843.1| transcription factor TFIIA complex subunit Toa1 [Aspergillus
fumigatus Af293]
gi|66850478|gb|EAL90805.1| transcription factor TFIIA complex subunit Toa1, putative
[Aspergillus fumigatus Af293]
gi|159131597|gb|EDP56710.1| transcription factor TFIIA complex subunit Toa1, putative
[Aspergillus fumigatus A1163]
Length = 392
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 345 NDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 394
+D D+L D E + ++L +DKV R K++WKC LKDGI+ K+
Sbjct: 343 DDPDDLVAEDHDAEDSVGEVMLCTYDKVQRVKNKWKCTLKDGILTTGGKE 392
>gi|269859665|ref|XP_002649557.1| transcription initiation factor IIA large chain [Enterocytozoon
bieneusi H348]
gi|220067108|gb|EED44576.1| transcription initiation factor IIA large chain [Enterocytozoon
bieneusi H348]
Length = 144
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 340 EPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNK-DILFN 398
E +E++ DE D+ + E+ TQ + F KV ++K +WKC KDG ++I+ + D FN
Sbjct: 78 EFSDESEYDEDSDIKKAEKY-TQSYFICLFVKVIKSKGKWKCIFKDGFINIDGREDQPFN 136
Query: 399 KATGEFDF 406
A+GE ++
Sbjct: 137 NASGELEW 144
>gi|225677571|gb|EEH15855.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 405
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 363 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 394
++L +DKV R KS+WKC LKDGI+ K+
Sbjct: 374 QVMLCTYDKVQRVKSKWKCTLKDGILTSGGKE 405
>gi|258563172|ref|XP_002582331.1| predicted protein [Uncinocarpus reesii 1704]
gi|237907838|gb|EEP82239.1| predicted protein [Uncinocarpus reesii 1704]
Length = 385
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 103/259 (39%), Gaps = 45/259 (17%)
Query: 184 VNVAYVEGRD-------EADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIP--- 233
++A D A HQ Q +S ++R P Q+ G P
Sbjct: 135 AHIAQQRAADALQQRYGAAAASQIHQLQAQSQAALSLPGQQRFQ-PGQFPAGQSQDPKLP 193
Query: 234 -----------QQDGAGDAMSEIFELEVSEFPGRQDSV----TTANREIFANLASSSVKI 278
Q DGA D+ S+ +E R+++ A+R + + +K
Sbjct: 194 PHQAPQPVGHSQTDGADDSGSDPLTEWKAEVARRREAAEQNGANADRVMREYV---EIKG 250
Query: 279 PQLDG-PIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDD 337
Q++G + P D N + + E+ + + A PA Q + +
Sbjct: 251 RQMEGNGLLAPLRDRYPRANGKQRKDAIKENPTLSAL-----VAAEAPATPRQANGYDGV 305
Query: 338 DDEPLNENDDDELDDVDQGEELNTQ----------HLVLAQFDKVTRTKSRWKCALKDGI 387
DD + +++D++ + D + + ++L +DKV R KS+WKC LKDGI
Sbjct: 306 DDYGIKKDEDEDAINSDLDDPDDPLDDPEGDDAVGQVMLCTYDKVQRVKSKWKCTLKDGI 365
Query: 388 MHINNKDILFNKATGEFDF 406
+ K+ +F+K GEF++
Sbjct: 366 LTTGGKEYVFHKGNGEFEW 384
>gi|345571083|gb|EGX53898.1| hypothetical protein AOL_s00004g557 [Arthrobotrys oligospora ATCC
24927]
Length = 781
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 65 GGPITPVHDLNVPYEGTEEYE--TPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGST 122
GG TP+H+ +GT +E TP + P P+ TP++ +PG+TPL + LPG T
Sbjct: 393 GGENTPLHE----GKGTTGFEGMTPRRSAIVTPNPMATPMRPGMPGATPL--HSGLPGQT 446
Query: 123 PLPGTADNSTYN 134
PL DN N
Sbjct: 447 PLRTPRDNLAIN 458
>gi|156084039|ref|XP_001609503.1| DNA-directed RNA polymerase II large subunit [Babesia bovis T2Bo]
gi|154796754|gb|EDO05935.1| DNA-directed RNA polymerase II large subunit, putative [Babesia
bovis]
Length = 179
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 335 EDDDDEPLNENDDDELD--DVDQGEELNTQHLVLAQFDKVTRTKSR------WKCALKDG 386
E DD E+D + LD D+D +E T+ +V+ DK++R ++ WK LK G
Sbjct: 101 EQTDDTTECEDDMEILDVSDLDD-QEPETKDIVIGIIDKISRPSTKKTTAPTWKVKLKYG 159
Query: 387 IMHINNKDILFNKATGEFDF 406
I+ IN +I F+ GEF+F
Sbjct: 160 ILQINGVEIPFDNLEGEFEF 179
>gi|350638671|gb|EHA27027.1| hypothetical protein ASPNIDRAFT_46333 [Aspergillus niger ATCC 1015]
Length = 386
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 341 PLNENDDDELDDV--DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 394
+N + DD D V D E ++L +DKV R K++WKC LKDGI+ K+
Sbjct: 331 AINSDLDDPDDLVAEDHDAEDAVGQVMLCTYDKVQRVKNKWKCTLKDGILTTGGKE 386
>gi|313217045|emb|CBY38232.1| unnamed protein product [Oikopleura dioica]
Length = 339
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 34/168 (20%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M + +Y V+E+VISKVR+ ++ G ESVL +L+ +W K+ ++ +
Sbjct: 6 MVPNPVPRLYESVVEEVISKVRESVLDEGLDESVLCDLKALWTKKLEESKAM-------- 57
Query: 61 QPAPGGPITPVHDLNVPYEGTEEYETPTAEILFP----PTPLQTPIQTPL---------- 106
GP P ++ PY G + I P P Q P + +
Sbjct: 58 ----SGP-EPTNEYR-PYVGRHGPPGESPNIYHPHPQAPHHRQPPFRHNIIQQQQISHSR 111
Query: 107 --PGSTPLPG-STPLPGSTPLPGTADN-STYNI--PTGSSDYPTPASD 148
P PLPG TPLP P P + S YN+ P +P PAS
Sbjct: 112 LGPRVMPLPGIPTPLPQPIPQPVMRQHPSQYNLRMPARPPHHPIPASS 159
>gi|440636245|gb|ELR06164.1| hypothetical protein GMDG_07819 [Geomyces destructans 20631-21]
Length = 337
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKM 46
M+ G VY ++I DV+ R +F G ESVL+EL +W+ K+
Sbjct: 1 MSNQTVGAVYQQIIRDVVDSSRVDFEEGGVDESVLDELSRVWQQKL 46
>gi|406698650|gb|EKD01884.1| pre-mRNA splicing factor CEF1 (PRP19-associated complex protein 85)
[Trichosporon asahii var. asahii CBS 8904]
Length = 827
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGS- 115
S+ + P G TP+H+ P G + TP TP P +TP G+
Sbjct: 390 SSVQTPLLGEENTPMHEEAAPGAG------------YSATPRHNVASTPNPLATPARGAM 437
Query: 116 -TP--LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPP 169
TP LPG+TPL DN N P G+ TPA+D +A+ + +P P
Sbjct: 438 ATPRGLPGATPLRTPRDNLALNTPAGAGWGETPATDRRRMKDARRALKAGFASLPKP 494
>gi|167519254|ref|XP_001743967.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777929|gb|EDQ91545.1| predicted protein [Monosiga brevicollis MX1]
Length = 158
Score = 41.2 bits (95), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 31/48 (64%)
Query: 359 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+T + +L +D+V++TK +KCAL++ ++ ++ K +F+K E +
Sbjct: 111 FHTANSLLCFYDRVSKTKGAYKCALRNAVLTVDRKSYVFSKIQAELKW 158
>gi|221052724|ref|XP_002261085.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|194247089|emb|CAQ38273.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 687
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 327 VVTQNDAAEDDDDEPLNENDD---DELDDVDQGEELNTQHLVLAQFDKVTR------TKS 377
+V A+DD+ + LNE DD +L DVD T ++++ DK+T+ S
Sbjct: 76 IVELEHRAQDDEADELNELDDISISDLSDVDPP----TSNVIVGICDKITKPCGRRNASS 131
Query: 378 RWKCALKDGIMHINNKDILFNKATGEFDF 406
WK LK G+M ++ K++ F G+ +
Sbjct: 132 NWKIKLKGGLMKVDGKEMFFRSLQGDLEL 160
>gi|194769960|ref|XP_001967069.1| GF21853 [Drosophila ananassae]
gi|190622864|gb|EDV38388.1| GF21853 [Drosophila ananassae]
Length = 1618
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 94 PPTPLQTPIQTP----LPGSTPLPGSTPLPGSTPLPGTADN-STYNIPTGSSDYPTPASD 148
PP P PI P LPG T LP +PLPG LPG A S ++P G+S P+ AS
Sbjct: 1476 PPRPQTAPITAPAMASLPGVTSLPSVSPLPGVASLPGLASLPSAVSLPGGAS-LPSVASL 1534
Query: 149 SG 150
+G
Sbjct: 1535 AG 1536
>gi|32398660|emb|CAD98620.1| DNA-directed RNA polymerase ii largest subunit, possible
[Cryptosporidium parvum]
Length = 297
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 349 ELDDVDQGEELNTQHLVLAQFDKVTR-------TKSRWKCALKDGIMHINNKDILFNKAT 401
+LDD EE +++ F+KV R K +W+ L++GI I N++I F+
Sbjct: 237 DLDD----EEPECSDVIIGHFEKVIRPYTRKKNQKGKWRVKLRNGIAQIANQEIPFDTLI 292
Query: 402 GEFDF 406
GEF+F
Sbjct: 293 GEFEF 297
>gi|156094515|ref|XP_001613294.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148802168|gb|EDL43567.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 610
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 335 EDDDDEPLNENDD---DELDDVDQGEELNTQHLVLAQFDKVTR------TKSRWKCALKD 385
+DD+ + LNE DD +L DVD T ++++ DK+T+ S WK LK
Sbjct: 96 QDDEADELNELDDISISDLSDVDPP----TSNVIVGICDKITKPCGRRNASSNWKIKLKG 151
Query: 386 GIMHINNKDILFNKATGEFD 405
G+M ++ K++ F G+ D
Sbjct: 152 GLMKVDGKEMFFRSLQGDLD 171
>gi|160878988|ref|YP_001557956.1| redoxin domain-containing protein [Clostridium phytofermentans
ISDg]
gi|160427654|gb|ABX41217.1| Redoxin domain protein [Clostridium phytofermentans ISDg]
Length = 329
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 95 PTPLQTPIQT--PLPGSTPLPGSTPLPGSTPLP 125
P P +TP+ T P+P STP P STP+P STP+P
Sbjct: 153 PVPTKTPVSTSTPVPTSTPFPTSTPVPTSTPVP 185
>gi|66475180|ref|XP_625357.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46226334|gb|EAK87343.1| hypothetical protein cgd6_180 [Cryptosporidium parvum Iowa II]
Length = 333
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 349 ELDDVDQGEELNTQHLVLAQFDKVTR-------TKSRWKCALKDGIMHINNKDILFNKAT 401
+LDD EE +++ F+KV R K +W+ L++GI I N++I F+
Sbjct: 273 DLDD----EEPECSDVIIGHFEKVIRPYTRKKNQKGKWRVKLRNGIAQIANQEIPFDTLI 328
Query: 402 GEFDF 406
GEF+F
Sbjct: 329 GEFEF 333
>gi|30984464|ref|NP_851896.1| large tegument protein [Macacine herpesvirus 1]
gi|30844278|gb|AAP41454.1| very large tegument protein [Macacine herpesvirus 1]
Length = 3288
Score = 39.7 bits (91), Expect = 2.9, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 37/110 (33%), Gaps = 12/110 (10%)
Query: 62 PAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGS 121
P P GP T + P T P PPTP P P P + P P
Sbjct: 455 PTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRP---PTPANPTASSEPPTPAG 511
Query: 122 TPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPS 171
P T PT SS+ PTP + G PSS PP +
Sbjct: 512 RPPTPAGRPPTPANPTASSEPPTPNPE---------GAPAPSSNEQPPAA 552
>gi|67585023|ref|XP_665087.1| DNA-directed RNA polymerase ii largest subunit [Cryptosporidium
hominis TU502]
gi|54655497|gb|EAL34857.1| DNA-directed RNA polymerase ii largest subunit [Cryptosporidium
hominis]
Length = 214
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 349 ELDDVDQGEELNTQHLVLAQFDKVTR-------TKSRWKCALKDGIMHINNKDILFNKAT 401
+LDD EE +++ F+KV R K +W+ L++GI I N++I F+
Sbjct: 154 DLDD----EEPECSDVIIGHFEKVIRPYTRKKNQKGKWRVKLRNGIAQIANQEIPFDTLI 209
Query: 402 GEFDF 406
GEF+F
Sbjct: 210 GEFEF 214
>gi|429962118|gb|ELA41662.1| hypothetical protein VICG_01295 [Vittaforma corneae ATCC 50505]
Length = 118
Score = 38.9 bits (89), Expect = 4.8, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 319 DIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLV--LAQFDKVTRTK 376
++ S P V T + A + DE ++ D L + D+ + L Q V + F KVT+TK
Sbjct: 28 EVLQSEPVVNTADLAELQERDESFEDSHSDLLSEEDRLDRLERQIGVYMVCFFTKVTKTK 87
Query: 377 SRWKCALKDGIMHINNKDILFNKATGEF 404
++WKC+ K+G ++++N DI ++ ATGEF
Sbjct: 88 TKWKCSFKNGFINLDNYDIPYSTATGEF 115
>gi|453054178|gb|EMF01633.1| DedA protein [Streptomyces mobaraensis NBRC 13819 = DSM 40847]
Length = 493
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 27/54 (50%)
Query: 97 PLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSG 150
P P P PGS P PGS P PG+ P PG A S G++ P PAS G
Sbjct: 266 PAPEPGSAPQPGSAPRPGSAPRPGAAPQPGAAPWSGATPQPGAAPQPGPASRPG 319
>gi|402224967|gb|EJU05029.1| DUF1692-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 517
Score = 37.7 bits (86), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 108 GSTPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSG 158
GS+PLP S+ PG TP PG++ S + SS +PTP S G T + +G
Sbjct: 397 GSSPLPTSSFTPGHTPTPGSSFMSGHAPTPSSSGFPTPRSYVAGRTPSTAG 447
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.310 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,833,169,032
Number of Sequences: 23463169
Number of extensions: 421604124
Number of successful extensions: 2371987
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1936
Number of HSP's successfully gapped in prelim test: 10463
Number of HSP's that attempted gapping in prelim test: 2183790
Number of HSP's gapped (non-prelim): 100633
length of query: 406
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 261
effective length of database: 8,957,035,862
effective search space: 2337786359982
effective search space used: 2337786359982
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 78 (34.7 bits)