BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015442
(406 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9USU9|TOA1_SCHPO Transcription initiation factor IIA large subunit
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=toa1 PE=1 SV=1
Length = 369
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 114/421 (27%), Positives = 169/421 (40%), Gaps = 68/421 (16%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ S G VY VI DVI+ R +F NG ++ L ELQ +W+ K+ V D + P
Sbjct: 1 MSNSIVGEVYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKL----VATDVATFPW 56
Query: 61 QPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTP---IQTPLPGSTPLPGSTP 117
AP G P ++ P + L+T + P ++P+
Sbjct: 57 AQAPVGTF------------------PIGQLFDPVSGLRTDSLDVTAPAVANSPI----- 93
Query: 118 LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
L + T+ G+S+Y +P + S ++ + SS +P S N
Sbjct: 94 LNNIAAIRAVQQMDTFAQQHGNSNYYSPPTPSL--PQSATNISFDSSAIPNVQSNPNNTA 151
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTM---SAGKRKREDFPAQYHNGGYNIPQ 234
P S N + AD P+ D T S G+ D + GG +P
Sbjct: 152 PFPSYSSNSLQLPTNQTADS-----PIINDHSTANVTSTGQEHAPDSSSTNSFGGLLLPN 206
Query: 235 QDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLS 294
Q+ SE+ E E S + T AN S +PQ DG I D DD S
Sbjct: 207 QNSP--KKSELGETESS-------NTTPAN---------SRNDVPQTDGAIHD-LDDAGS 247
Query: 295 TPNIYNYQGVVNE--DYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDD 352
N + + + + D I N I + D + D P +E + +LDD
Sbjct: 248 PSNFESNRFAIAQKADAEIYEVLKKNRILQIDGTIEDNEDEKKPPVDTPSDEAINSDLDD 307
Query: 353 VDQGEELNT-------QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFD 405
D E T Q +VL +DKV K++WKC +DG++ +N KD LF KA GEF+
Sbjct: 308 PDSDEAPETEEGSDIGQAIVLCLYDKVNHHKNKWKCVFRDGVVGVNGKDYLFFKANGEFE 367
Query: 406 F 406
+
Sbjct: 368 W 368
>sp|P52655|TF2AA_HUMAN Transcription initiation factor IIA subunit 1 OS=Homo sapiens
GN=GTF2A1 PE=1 SV=1
Length = 376
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 304 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 361
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 362 GRDYIFSKAIGDAEW 376
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>sp|Q5RCU0|TF2AA_PONAB Transcription initiation factor IIA subunit 1 OS=Pongo abelii
GN=GTF2A1 PE=2 SV=1
Length = 376
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 334 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 391
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 304 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 361
Query: 392 NKDILFNKATGEFDF 406
+D +F+KA G+ ++
Sbjct: 362 GRDYIFSKAIGDAEW 376
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>sp|O08949|TF2AA_RAT Transcription initiation factor IIA subunit 1 OS=Rattus norvegicus
GN=Gtf2a1 PE=2 SV=1
Length = 377
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 311 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIF 368
Query: 398 NKATGEFDF 406
+KA G+ ++
Sbjct: 369 SKAIGDAEW 377
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>sp|Q99PM3|TF2AA_MOUSE Transcription initiation factor IIA subunit 1 OS=Mus musculus
GN=Gtf2a1 PE=2 SV=2
Length = 378
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 333 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 390
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 305 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 362
Query: 391 NNKDILFNKATGEFDF 406
N +D +F+KA G+ ++
Sbjct: 363 NGRDYIFSKAIGDAEW 378
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>sp|Q54G80|TF2AA_DICDI Transcription initiation factor IIA subunit 1 OS=Dictyostelium
discoideum GN=gtf2a1 PE=3 SV=1
Length = 310
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 362 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 404
+H VL Q++KV+R K++ KC KDGIMH+N KD LFNKA GE
Sbjct: 265 EHFVLCQYEKVSRIKNKRKCNFKDGIMHLNGKDTLFNKANGEM 307
>sp|P52654|TF2AA_DROME Transcription initiation factor IIA subunit 1 OS=Drosophila
melanogaster GN=TfIIA-L PE=1 SV=2
Length = 366
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 341 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 400
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 303 PLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 360
Query: 401 TGEFDF 406
G+ ++
Sbjct: 361 NGDAEW 366
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ +W K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAV 54
>sp|P32773|TOA1_YEAST Transcription initiation factor IIA large subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TOA1 PE=1
SV=1
Length = 286
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 341 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 399
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D F K
Sbjct: 221 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQK 278
Query: 400 ATGEFDF 406
A E ++
Sbjct: 279 AQVEAEW 285
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + VY ++E V+++VR++F N G E L +L+ IW+ K+ + V
Sbjct: 1 MSNAEASRVYEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQKKLTETKV 51
>sp|Q8R4I4|TF2AY_MOUSE TFIIA-alpha and beta-like factor OS=Mus musculus GN=Gtf2a1l PE=2
SV=2
Length = 468
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD + + D + +T+++++ Q+DK+ R+K+RWK LKDG+M +D +F
Sbjct: 402 EEDPLNSGDD--VSEQDVPDLFDTENVIVCQYDKIHRSKNRWKFYLKDGVMCFGGRDYVF 459
Query: 398 NKATGEFDF 406
KA GE ++
Sbjct: 460 AKAIGEAEW 468
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+
Sbjct: 10 LYQSVIEDVIEGVRDLFAEEGIEEQVLKDLKKLWETKVLQS 50
>sp|Q9UNN4|TF2AY_HUMAN TFIIA-alpha and beta-like factor OS=Homo sapiens GN=GTF2A1L PE=2
SV=2
Length = 478
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 338 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 397
+++PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 412 EEDPLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 469
Query: 398 NKATGEFDF 406
KA G+ ++
Sbjct: 470 AKAIGDAEW 478
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>sp|Q8SW23|TOA1_ENCCU Transcription initiation factor IIA large subunit
OS=Encephalitozoon cuniculi (strain GB-M1) GN=TOA1 PE=1
SV=1
Length = 157
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 360 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406
+T + ++ + KV +K +WKC K G + I N D +FN A GE ++
Sbjct: 111 STGNCMVCLYVKVNMSKGKWKCTFKQGFISIGNIDFVFNSAQGELEW 157
>sp|Q6A068|CDC5L_MOUSE Cell division cycle 5-like protein OS=Mus musculus GN=Cdc5l PE=1
SV=2
Length = 802
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 19/95 (20%)
Query: 62 PAPGGPITPVHDLNVPYEGTEEYETPTAEILFPP-----TPLQTPIQ-----TPLPGSTP 111
P GG TP+H+ + + G TP +++ P TP +TP TP G+TP
Sbjct: 378 PLKGGLNTPLHESD--FSGV----TPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTP 431
Query: 112 LPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPA 146
P + PG TPL D N G +DY P+
Sbjct: 432 KPVTNATPGRTPL---RDKLNINPEDGMADYSDPS 463
>sp|O08837|CDC5L_RAT Cell division cycle 5-like protein OS=Rattus norvegicus GN=Cdc5l
PE=1 SV=2
Length = 802
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 19/95 (20%)
Query: 62 PAPGGPITPVHDLNVPYEGTEEYETPTAEILFPP-----TPLQTPIQ-----TPLPGSTP 111
P GG TP+H+ + + G TP +++ P TP +TP TP G+TP
Sbjct: 378 PLKGGLNTPLHESD--FSGV----TPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTP 431
Query: 112 LPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPA 146
P + PG TPL D N G +DY P+
Sbjct: 432 KPVTNATPGRTPL---RDKLNINPEDGMADYSDPS 463
>sp|C3PH19|IF2_CORA7 Translation initiation factor IF-2 OS=Corynebacterium aurimucosum
(strain ATCC 700975 / DSM 44827 / CN-1) GN=infB PE=3
SV=1
Length = 905
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 95 PTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTA---DNSTYNIPTGSSDYPTPAS 147
P+ P P PG P PG P PG+TP PG A N GS TP S
Sbjct: 92 PSAAPKPGAAPKPGGAPKPGGAPKPGATPKPGGAPKPGAQRKNTEKGSERAVTPRS 147
>sp|A4GSN8|NUA_ARATH Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA PE=1 SV=1
Length = 2093
Score = 33.9 bits (76), Expect = 2.3, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 18/119 (15%)
Query: 95 PTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTE 154
PT + T + +P + P T +P STPL + +T +P +SD N E
Sbjct: 1635 PTDMVTEPSSGIPAAEP-STMTRVPSSTPLIKSPVATTQQLPKVASD----------NKE 1683
Query: 155 AKSGNGRPSSYMPPPPS------PWMNPRPPLSVDVNVAYVEGR-DEADRGTSHQPLTQ 206
+ + +PS+ P + P VDV++ EG DE + +H+P +Q
Sbjct: 1684 KRLISQKPSTEFRRPSGRRIVRPQLVKPEESPKVDVDMPEAEGTGDEGKQPAAHEPESQ 1742
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,761,659
Number of Sequences: 539616
Number of extensions: 9736474
Number of successful extensions: 54146
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 1261
Number of HSP's that attempted gapping in prelim test: 42018
Number of HSP's gapped (non-prelim): 8116
length of query: 406
length of database: 191,569,459
effective HSP length: 120
effective length of query: 286
effective length of database: 126,815,539
effective search space: 36269244154
effective search space used: 36269244154
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)