Query 015442
Match_columns 406
No_of_seqs 174 out of 191
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 12:42:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rm1_C Transcription initiatio 100.0 3.9E-50 1.3E-54 384.7 11.4 61 1-61 1-62 (286)
2 1nvp_C Transcription initiatio 100.0 3.1E-35 1.1E-39 236.4 6.2 70 335-406 7-76 (76)
3 1nh2_C Transcription initiatio 100.0 1.8E-33 6.1E-38 227.6 6.1 71 336-406 5-78 (79)
4 1nh2_B Transcription initiatio 99.8 1E-20 3.4E-25 142.9 5.2 51 2-52 1-51 (53)
5 1nvp_B Transcription initiatio 99.8 2.8E-20 9.6E-25 142.4 4.9 51 2-52 5-55 (57)
6 3iot_A Maltose-binding protein 59.9 7.7 0.00026 37.0 4.2 29 24-52 349-378 (449)
7 2kzc_A Uncharacterized protein 28.7 47 0.0016 27.1 3.5 32 14-49 46-77 (85)
8 1s1d_A Apyrase; adpase, five-b 27.3 41 0.0014 33.5 3.5 35 364-398 38-76 (331)
9 2k7i_A UPF0339 protein ATU0232 26.4 28 0.00097 28.2 1.8 21 365-386 22-42 (83)
10 4egx_A Kinesin-like protein KI 25.7 38 0.0013 30.3 2.7 19 31-49 17-35 (184)
11 3vej_A Ubiquitin-like protein 22.3 43 0.0015 24.3 1.9 33 9-44 6-39 (41)
12 3iot_A Maltose-binding protein 22.2 19 0.00064 34.3 0.0 15 18-32 361-375 (449)
13 2dk1_A WW domain-binding prote 21.6 44 0.0015 24.5 1.9 27 375-406 5-31 (50)
14 1e0n_A Hypothetical protein; Y 20.8 56 0.0019 21.0 2.1 20 387-406 5-24 (27)
No 1
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-50 Score=384.69 Aligned_cols=61 Identities=28% Similarity=0.557 Sum_probs=57.1
Q ss_pred CCCcchhhhhHHHHHHHHHHhHHHhhhCCCChhHHHHHHHHHHHHHHHhccc-ccCCCCCCC
Q 015442 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI-IDRTSAPKQ 61 (406)
Q Consensus 1 MsNs~V~~VY~sVIeDVIn~vReDFed~GVDEsVLqELK~lWq~KLsqsgva-~~~~~a~~~ 61 (406)
|||..|++||++||++||++||++|+++||||+||+|||++|++||+++||+ ++|++++..
T Consensus 1 MSn~~vskvY~~VIedVI~~VR~dF~deGVDE~VL~ELk~~We~KL~qsgv~~f~~dp~~~~ 62 (286)
T 1rm1_C 1 MSNAEASRVYEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQKKLTETKVTTFSWDNQFNE 62 (286)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTSSCCTTGGGGC-
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhcCcccCCCCcCccc
Confidence 9999999999999999999999999999999999999999999999999999 999876654
No 2
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=100.00 E-value=3.1e-35 Score=236.36 Aligned_cols=70 Identities=40% Similarity=0.773 Sum_probs=46.7
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCCCCeEEEEeeeeeecCCceeEEeeceeeEeCCeeeeeecccccccC
Q 015442 335 EDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406 (406)
Q Consensus 335 ~~~eEdpLNsdDDdd~~D~d~~ed~~t~NvvlCqydKV~R~KnKWKc~LKdGIm~ingkDyvF~Ka~GEfE~ 406 (406)
++++||+|||+||++++++ ++++++.||||||||||+|+||||||+|||||||||||||||+||+|||||
T Consensus 7 ~~~~ed~lnsd~Dd~dd~~--~~~~~~~n~vlC~ydKV~R~KnkWKc~LKdGim~ingkdy~F~ka~GE~eW 76 (76)
T 1nvp_C 7 GQVEEEPLNSEDDVSDEEG--QELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 76 (76)
T ss_dssp -------------------------CCCCEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred ccccccccCCcCCCccccc--ccccCCCcEEEEEEEEEeccCceEEEEEeccEEEECCEEEEEeccceeecC
Confidence 4578999999997665544 456789999999999999999999999999999999999999999999999
No 3
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=99.98 E-value=1.8e-33 Score=227.56 Aligned_cols=71 Identities=42% Similarity=0.670 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCCCCccc---ccCCCCCCCCeEEEEeeeeeecCCceeEEeeceeeEeCCeeeeeecccccccC
Q 015442 336 DDDDEPLNENDDDELDDV---DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406 (406)
Q Consensus 336 ~~eEdpLNsdDDdd~~D~---d~~ed~~t~NvvlCqydKV~R~KnKWKc~LKdGIm~ingkDyvF~Ka~GEfE~ 406 (406)
+.+||++|||+|++++|. +++++..+.|+||||||||+|+||||||+|||||||||||||||+||+|||||
T Consensus 5 ~~d~d~insdlDd~dd~~~~~~~~~d~~~~n~vlC~ydKV~R~KnKWKc~LKdGi~~ingkDy~F~ka~GE~eW 78 (79)
T 1nh2_C 5 LLDTDEVGSELDDSDDDYLISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW 78 (79)
T ss_dssp ----------------CCBC---------CCEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred ccccccccCccCCccccccccccccccccCcEEEEEEEEEeeecceEEEEEeeeEEEECCEEEEEecccEEEEE
Confidence 357889999976555543 33345689999999999999999999999999999999999999999999999
No 4
>1nh2_B Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 PDB: 1ytf_B*
Probab=99.81 E-value=1e-20 Score=142.95 Aligned_cols=51 Identities=31% Similarity=0.642 Sum_probs=45.6
Q ss_pred CCcchhhhhHHHHHHHHHHhHHHhhhCCCChhHHHHHHHHHHHHHHHhccc
Q 015442 2 ATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52 (406)
Q Consensus 2 sNs~V~~VY~sVIeDVIn~vReDFed~GVDEsVLqELK~lWq~KLsqsgva 52 (406)
||..|++||++||+|||++||++|+++|||++||+|||++||+||+++||+
T Consensus 1 sn~~v~~vY~~VI~dVI~~vr~~F~~~Gvde~vL~eLk~~We~KL~~s~va 51 (53)
T 1nh2_B 1 SNAEASRVYEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQKKLTETKVT 51 (53)
T ss_dssp -CHHHHHHHHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHC----
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 788999999999999999999999999999999999999999999999998
No 5
>1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1
Probab=99.80 E-value=2.8e-20 Score=142.39 Aligned_cols=51 Identities=43% Similarity=0.721 Sum_probs=42.8
Q ss_pred CCcchhhhhHHHHHHHHHHhHHHhhhCCCChhHHHHHHHHHHHHHHHhccc
Q 015442 2 ATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52 (406)
Q Consensus 2 sNs~V~~VY~sVIeDVIn~vReDFed~GVDEsVLqELK~lWq~KLsqsgva 52 (406)
||+.|++||++||+|||++||++|+++|||++||+|||++||+||+++||+
T Consensus 5 ~~~~v~~vY~~VIedVI~~vr~~F~~~Gvde~vL~eLk~~We~KL~~s~a~ 55 (57)
T 1nvp_B 5 NTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 55 (57)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC-----
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 578899999999999999999999999999999999999999999999987
No 6
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=59.86 E-value=7.7 Score=36.98 Aligned_cols=29 Identities=7% Similarity=-0.026 Sum_probs=17.0
Q ss_pred HhhhCCCC-hhHHHHHHHHHHHHHHHhccc
Q 015442 24 EFVNNGPG-ESVLNELQGIWEMKMIQAGVI 52 (406)
Q Consensus 24 DFed~GVD-EsVLqELK~lWq~KLsqsgva 52 (406)
......++ +..|.++++.+++-+....+.
T Consensus 349 ~~~~G~~~~eeal~~~~~~~~~i~~~~~~~ 378 (449)
T 3iot_A 349 NAASGRQTVDAALAAAQTNAAAMATLEKLM 378 (449)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhhHHHH
Confidence 33444444 567888888777655444443
No 7
>2kzc_A Uncharacterized protein; DUF1476, JCSG, structutral genomics, PSI-biology, protein ST initiative, structural genomics; NMR {Jannaschia SP}
Probab=28.68 E-value=47 Score=27.14 Aligned_cols=32 Identities=31% Similarity=0.362 Sum_probs=23.8
Q ss_pred HHHHHHHhHHHhhhCCCChhHHHHHHHHHHHHHHHh
Q 015442 14 IEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49 (406)
Q Consensus 14 IeDVIn~vReDFed~GVDEsVLqELK~lWq~KLsqs 49 (406)
-+|||+.|+.||...|+ ..+|+.--...|.+.
T Consensus 46 dedV~rKv~~DL~a~gv----e~~iR~km~e~l~~A 77 (85)
T 2kzc_A 46 HEDVMRKVLGDLDGKRP----EAEVRAKYEGLMAVA 77 (85)
T ss_dssp SSHHHHHHHHHHTTSSC----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCc----HHHHHHHHHHHHHHH
Confidence 36999999999999999 555555555555544
No 8
>1s1d_A Apyrase; adpase, five-blade beta propeller, calcium-binding protein, nucleotide-binding motif, hydrolase; HET: GP2; 1.60A {Homo sapiens} SCOP: b.67.3.1 PDB: 1s18_A* 2h2n_A 2h2u_A
Probab=27.25 E-value=41 Score=33.48 Aligned_cols=35 Identities=23% Similarity=0.536 Sum_probs=24.8
Q ss_pred eEEEEeeeeeec--CCceeEEeeceeeEeCCe--eeeee
Q 015442 364 LVLAQFDKVTRT--KSRWKCALKDGIMHINNK--DILFN 398 (406)
Q Consensus 364 vvlCqydKV~R~--KnKWKc~LKdGIm~ingk--DyvF~ 398 (406)
.||+=-||-.|. +++|+++||-|.+..+++ .|-|.
T Consensus 38 aiIaDLD~~Sk~~~~~~w~S~~~~G~L~~~~~~~~~si~ 76 (331)
T 1s1d_A 38 AVIADLDTESRAQEENTWFSYLKKGYLTLSDSGDKVAVE 76 (331)
T ss_dssp EEEEECGGGGBCSSTTCEEEEEEEEEEEEETTSSCEEEE
T ss_pred EEEecCchhccccCCCcEEEEEEEEEEEECCCCCeEEEE
Confidence 356666777775 788999999999988663 44443
No 9
>2k7i_A UPF0339 protein ATU0232; protein of unknown function, swapped dimer. PSI2, structural genomics, unknown function; NMR {Agrobacterium tumefaciens str} SCOP: d.348.1.1
Probab=26.38 E-value=28 Score=28.21 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=17.4
Q ss_pred EEEEeeeeeecCCceeEEeece
Q 015442 365 VLAQFDKVTRTKSRWKCALKDG 386 (406)
Q Consensus 365 vlCqydKV~R~KnKWKc~LKdG 386 (406)
|.. |+.-....++|+|.||.+
T Consensus 22 Mag-FEi~k~~~Gq~rFrLkA~ 42 (83)
T 2k7i_A 22 MYK-FEIYQDKAGEYRFRFKAS 42 (83)
T ss_dssp CCE-EEEEECTTSCEEEEECCT
T ss_pred ccc-EEEEEcCCCCEEEEEEEC
Confidence 345 998888889999999974
No 10
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=25.70 E-value=38 Score=30.25 Aligned_cols=19 Identities=32% Similarity=0.643 Sum_probs=15.6
Q ss_pred ChhHHHHHHHHHHHHHHHh
Q 015442 31 GESVLNELQGIWEMKMIQA 49 (406)
Q Consensus 31 DEsVLqELK~lWq~KLsqs 49 (406)
.|..|.+|++-|++||.++
T Consensus 17 ~e~l~~el~~tWeeKl~~t 35 (184)
T 4egx_A 17 TEKIIAELNETWEEKLRRT 35 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 4778999999999998643
No 11
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=22.34 E-value=43 Score=24.29 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHhHHHhhhCCCC-hhHHHHHHHHHHH
Q 015442 9 VYIRVIEDVISKVRDEFVNNGPG-ESVLNELQGIWEM 44 (406)
Q Consensus 9 VY~sVIeDVIn~vReDFed~GVD-EsVLqELK~lWq~ 44 (406)
|.=+=|+.+.+. .|.+..-- +.+|+.||++|+.
T Consensus 6 VPWd~Ie~lL~~---~~~d~~~a~~~~L~RLqkGWel 39 (41)
T 3vej_A 6 VPWDDIEALLKN---NFENDQAAVRQVMERLQKGWSL 39 (41)
T ss_dssp SCHHHHHHHHHH---HTTTCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHH---HhcChHHHHHHHHHHHHhcccc
Confidence 344445555543 46666644 3899999999984
No 12
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=22.24 E-value=19 Score=34.32 Aligned_cols=15 Identities=7% Similarity=0.027 Sum_probs=6.2
Q ss_pred HHHhHHHhhhCCCCh
Q 015442 18 ISKVRDEFVNNGPGE 32 (406)
Q Consensus 18 In~vReDFed~GVDE 32 (406)
+....+.....|.++
T Consensus 361 l~~~~~~~~~i~~~~ 375 (449)
T 3iot_A 361 LAAAQTNAAAMATLE 375 (449)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhH
Confidence 344444444444333
No 13
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=21.60 E-value=44 Score=24.49 Aligned_cols=27 Identities=11% Similarity=0.411 Sum_probs=21.2
Q ss_pred cCCceeEEeeceeeEeCCeeeeeecccccccC
Q 015442 375 TKSRWKCALKDGIMHINNKDILFNKATGEFDF 406 (406)
Q Consensus 375 ~KnKWKc~LKdGIm~ingkDyvF~Ka~GEfE~ 406 (406)
+++.|+...-. +|+.|.|+..|+|-.|
T Consensus 5 ~~~~W~e~~s~-----~G~~YYyN~~T~eS~W 31 (50)
T 2dk1_A 5 SSGRWVEGITS-----EGYHYYYDLISGASQW 31 (50)
T ss_dssp CSCCEEECCCS-----TTCCCEEESSSCCEES
T ss_pred CCCCeEEEECC-----CCCEEEEECCCCCEEe
Confidence 45678876433 7999999999999776
No 14
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=20.77 E-value=56 Score=21.05 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=16.6
Q ss_pred eeEeCCeeeeeecccccccC
Q 015442 387 IMHINNKDILFNKATGEFDF 406 (406)
Q Consensus 387 Im~ingkDyvF~Ka~GEfE~ 406 (406)
+-+-.|+-|.|+..+++-.|
T Consensus 5 ~~~~~g~~YYyN~~T~~s~W 24 (27)
T 1e0n_A 5 IIHENGRPLYYNAEQKTKLH 24 (27)
T ss_dssp EEESSSSEEEEETTTTEEES
T ss_pred EECCCCCeEEEECCCCCEec
Confidence 45668999999999998665
Done!