Query 015446
Match_columns 406
No_of_seqs 112 out of 236
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 12:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u9w_A Leukotriene A-4 hydrola 76.4 21 0.00071 37.5 12.3 91 33-139 17-107 (608)
2 3q48_A Chaperone CUPB2; IG fol 60.1 4.6 0.00016 38.2 2.8 57 1-63 1-57 (257)
3 2x3c_A Toxic extracellular end 58.5 11 0.00039 37.0 5.4 18 49-66 37-54 (343)
4 2xdt_A Endoplasmic reticulum a 37.3 2.3E+02 0.0077 31.1 12.1 95 29-138 10-108 (897)
5 2k6w_A Putative uncharacterize 31.9 1.5E+02 0.005 24.5 7.3 26 112-137 81-106 (120)
6 2g30_A AP-2 complex subunit be 31.5 51 0.0017 31.0 4.9 84 28-145 31-118 (258)
7 2qsv_A Uncharacterized protein 29.0 72 0.0025 28.6 5.4 37 97-138 148-185 (220)
8 3ije_A Integrin alpha-V; integ 18.8 5.6E+02 0.019 28.3 11.0 86 41-140 617-703 (967)
9 3fcs_A Integrin, alpha 2B; bet 17.5 6E+02 0.02 28.2 10.8 83 43-139 625-708 (959)
10 1x9l_A CUI-DR1885; copper bind 14.3 1.7E+02 0.0057 25.1 4.2 25 112-136 106-130 (149)
No 1
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=76.39 E-value=21 Score=37.46 Aligned_cols=91 Identities=11% Similarity=0.145 Sum_probs=58.2
Q ss_pred EEeeEEEEEEcCCCeEEEEEEEEEEeCCCCCccEEEEEcCCCCCcceEEEEEEeccCccccceeeeeeeeeecCCCCCCC
Q 015446 33 RINNAERRIDLSTHIVKVFLTLKVENTGKTSASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKPTQLPDAPNE 112 (406)
Q Consensus 33 ~n~~v~R~IDL~~~~vk~~~~i~vkN~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~L~v~~~~~~~~~~~ 112 (406)
+.-++.=+||+.+....-+++|+++...+ ..++..+-. ..|..-++.+++.+ +...... .....
T Consensus 17 ~Hy~L~l~vD~~~~~~~G~v~I~~~~~~~-~~~~i~Ld~-----~~L~I~~V~v~g~~--------~~~~~~~--~~~~~ 80 (608)
T 3u9w_A 17 KHLHLRCSVDFTRRTLTGTAALTVQSQED-NLRSLVLDT-----KDLTIEKVVINGQE--------VKYALGE--RQSYK 80 (608)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEECST-TEEEEEEEE-----SSCEEEEEEETTEE--------CCEEECC--CCGGG
T ss_pred eEEEEEEEEECCCCEEEEEEEEEEEECCC-CCCEEEEEC-----CCCEEEEEEECCEE--------cceeccc--ccccc
Confidence 44566778999999999899999987532 345555432 23444455554322 2222111 01113
Q ss_pred ceEEEEEeCCCCCCCCeEEEEEEEEEc
Q 015446 113 TNYYTIVLANPLNTGETATLEILYILT 139 (406)
Q Consensus 113 ~~~~~I~Lp~pl~~g~~~~l~v~~~~~ 139 (406)
.....|.||.++.+|++++|.|.|...
T Consensus 81 ~~~l~I~l~~~l~~g~~~~l~I~y~~~ 107 (608)
T 3u9w_A 81 GSPMEISLPIALSKNQEIVIEISFETS 107 (608)
T ss_dssp CEEEEEEEEEEECTTCEEEEEEEEECC
T ss_pred CceEEEEcCCCCCCCCEEEEEEEEEEE
Confidence 457899999999999999999998653
No 2
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=60.11 E-value=4.6 Score=38.20 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=16.5
Q ss_pred CcccchhhhHHHHHHHHHHHHHhhccCCCCCeEEeeEEEEEEcCCCeEEEEEEEEEEeCCCCC
Q 015446 1 MEALLRPRIMLSLTIILIPIFLFISGASSHQIRINNAERRIDLSTHIVKVFLTLKVENTGKTS 63 (406)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~v~R~IDL~~~~vk~~~~i~vkN~g~~p 63 (406)
|.+.|+++++....+++++++++.++ .+.+... -+|.|-=.++ + .+.|.++|.|+.|
T Consensus 1 ~~~~~~~~~~~~~~l~~~l~~~~~~a--~A~v~i~-~TRvIy~~~~--k-~~sl~l~N~~~~P 57 (257)
T 3q48_A 1 MAPLMHRFHSFVAASAVAIALCVGTA--HAGLIAQ-GTRVVFPASE--R-EVTLRVSNTSGTP 57 (257)
T ss_dssp --------------------------------CCS-CSEEEEETTC--S-EEEEEEEECSSSC
T ss_pred CCcccccchHHHHHHHHHHHHHHHHh--ceeEEEc-ceEEEEeCCC--c-EEEEEEEeCCCCe
Confidence 77899999876654444443332222 2233333 3576655554 2 3678999987654
No 3
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=58.48 E-value=11 Score=36.99 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=13.7
Q ss_pred EEEEEEEEEeCCCCCccE
Q 015446 49 KVFLTLKVENTGKTSASE 66 (406)
Q Consensus 49 k~~~~i~vkN~g~~p~~~ 66 (406)
...++++|+|+|+++.+-
T Consensus 37 ~~~vk~tvtN~g~~~~~l 54 (343)
T 2x3c_A 37 DVRVNLTLTNTGDKPIRL 54 (343)
T ss_dssp CCEEEEEEEECSSSCEEE
T ss_pred CeEEEEEEEeCCCCceEe
Confidence 355668899999998763
No 4
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=37.31 E-value=2.3e+02 Score=31.09 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=54.0
Q ss_pred CCCeEEeeEEE--EEEcCCCeEEEEEEEEEEeCCCCCccEEEEEcCCCCCcceEEEEEEeccCccccceeeee--eeeee
Q 015446 29 SHQIRINNAER--RIDLSTHIVKVFLTLKVENTGKTSASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSL--AVKPT 104 (406)
Q Consensus 29 ~~~~~n~~v~R--~IDL~~~~vk~~~~i~vkN~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~L--~v~~~ 104 (406)
+..++-.++.= .+|+++....-+++|+++.. ++.+...+.. .++..-++.+.+...+ .+ .+...
T Consensus 10 p~~~~p~hY~l~L~~d~~~~~f~G~v~I~~~~~--~~~~~I~L~~-----~~l~I~~v~v~~~~~~-----~~~~~~~~~ 77 (897)
T 2xdt_A 10 PEYVIPVHYDLLIHANLTTLTFWGTTKVEITAS--QPTSTIILHS-----HHLQISRATLRKGAGE-----RLSEEPLQV 77 (897)
T ss_dssp CSSEEEEEEEEEEEEETTTTEEEEEEEEEEEES--SCEEEEEEEC-----SSCEEEEEEEEEC---------CEEEECEE
T ss_pred CCCcEeeEEEEEEEEecCCCeEEEEEEEEEEEE--cCCCEEEEEe-----CCCEEEEEEEEecCCc-----cccccccee
Confidence 34555555443 34777777777777877764 4556555543 2344444444322100 12 22111
Q ss_pred cCCCCCCCceEEEEEeCCCCCCCCeEEEEEEEEE
Q 015446 105 QLPDAPNETNYYTIVLANPLNTGETATLEILYIL 138 (406)
Q Consensus 105 ~~~~~~~~~~~~~I~Lp~pl~~g~~~~l~v~~~~ 138 (406)
.. ......+.|.||.||.+|++.+|.|+|.-
T Consensus 78 ~~---~~~~~~l~i~l~~~L~~g~~~~L~i~y~g 108 (897)
T 2xdt_A 78 LE---HPRQEQIALLAPEPLLVGLPYTVVIHYAG 108 (897)
T ss_dssp EE---ETTTTEEEEEEEEEECTTCCEEEEEEEEE
T ss_pred EE---cCCCcEEEEEeCCccCCCCEEEEEEEEEE
Confidence 10 01234789999999999999999888774
No 5
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=31.89 E-value=1.5e+02 Score=24.49 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=20.3
Q ss_pred CceEEEEEeCCCCCCCCeEEEEEEEE
Q 015446 112 ETNYYTIVLANPLNTGETATLEILYI 137 (406)
Q Consensus 112 ~~~~~~I~Lp~pl~~g~~~~l~v~~~ 137 (406)
+...-...|..||++|+++.+++.+-
T Consensus 81 G~HvML~gl~~~l~~G~~v~ltL~Fe 106 (120)
T 2k6w_A 81 GYHFMLLGLKRPLKAGEEVELDLLFA 106 (120)
T ss_dssp TEEEEEEEESSCBCTTCEEEEEEEET
T ss_pred ceEEEEeCCCCCCCCCCEEEEEEEEC
Confidence 44556677899999999998887763
No 6
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=31.54 E-value=51 Score=30.99 Aligned_cols=84 Identities=10% Similarity=0.201 Sum_probs=54.1
Q ss_pred CCCCeEEeeEEEEEEcCCCeEEEE----EEEEEEeCCCCCccEEEEEcCCCCCcceEEEEEEeccCccccceeeeeeeee
Q 015446 28 SSHQIRINNAERRIDLSTHIVKVF----LTLKVENTGKTSASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKP 103 (406)
Q Consensus 28 ~~~~~~n~~v~R~IDL~~~~vk~~----~~i~vkN~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~L~v~~ 103 (406)
+...|-..+=-+-++++.++.|.. .++++.|....+.+.|.+.+.+.-+ -+.+
T Consensus 31 p~~~~l~~~~g~GLeI~g~f~r~~g~i~l~l~~~N~s~~~is~faIQfNkNsF-----------------------GL~p 87 (258)
T 2g30_A 31 PKAVWLPAVKAKGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSF-----------------------GVIP 87 (258)
T ss_dssp CCEEEECGGGTTTEEEEEEEEEETTEEEEEEEEEECSSSCBCCCEEEECCBTT-----------------------CCEE
T ss_pred chhhcccccCCCcEEEEEEEEEeCCEEEEEEEEecCCccceeeeEEEEccccc-----------------------Cccc
Confidence 334565554445566666666665 9999999888888877666653211 1111
Q ss_pred ecCCCCCCCceEEEEEeCCCCCCCCeEEEEEEEEEccccccc
Q 015446 104 TQLPDAPNETNYYTIVLANPLNTGETATLEILYILTHSLEPF 145 (406)
Q Consensus 104 ~~~~~~~~~~~~~~I~Lp~pl~~g~~~~l~v~~~~~~~~~P~ 145 (406)
.. . ..+|.||+||++++..|-..+++.....
T Consensus 88 ~~----~-------~~~~~~L~pgqs~~v~lpl~~~~~~~~~ 118 (258)
T 2g30_A 88 ST----P-------LAIHTPLMPNQSIDVSLPLNTLGPVMKM 118 (258)
T ss_dssp SS----C-------CCCCSCBCTTCEEEEEEEEESCSCBCCC
T ss_pred Cc----c-------ccCCCccCCCCcEEEEEeeecCCcccCC
Confidence 11 0 1356789999999999988887766544
No 7
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=29.03 E-value=72 Score=28.64 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=23.4
Q ss_pred eeeeeeeecCCCCCCCceEEEEEeC-CCCCCCCeEEEEEEEEE
Q 015446 97 VSLAVKPTQLPDAPNETNYYTIVLA-NPLNTGETATLEILYIL 138 (406)
Q Consensus 97 ~~L~v~~~~~~~~~~~~~~~~I~Lp-~pl~~g~~~~l~v~~~~ 138 (406)
.+|.+..+.. ......+.++ .|++||++..|.|.|--
T Consensus 148 ~pL~I~~v~~-----scgct~~~~~~~~i~PGe~~~i~v~~~~ 185 (220)
T 2qsv_A 148 GPLRLHSVTT-----RNPALTAVPDRTEIKPGGSTLLRIAVDP 185 (220)
T ss_dssp SCEEEEEEEE-----CSTTEEEEESCSEECTTCEEEEEEEECH
T ss_pred CCEEEEEEEe-----CCCCEeeecCCccCCCCCEEEEEEEEec
Confidence 4566655541 1223455564 46999999998888753
No 8
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=18.75 E-value=5.6e+02 Score=28.34 Aligned_cols=86 Identities=17% Similarity=0.310 Sum_probs=53.7
Q ss_pred EEcCCCeEEEEEEEEEEeCCCC-CccEEEEEcCCCCCcceEEEEEEeccCccccceeeeeeeeeecCCCCCCCceEEEEE
Q 015446 41 IDLSTHIVKVFLTLKVENTGKT-SASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKPTQLPDAPNETNYYTIV 119 (406)
Q Consensus 41 IDL~~~~vk~~~~i~vkN~g~~-p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~L~v~~~~~~~~~~~~~~~~I~ 119 (406)
+-++.. -+..++++++|.|+. =.....+.+|+ .|.|..+...... ...+.+.... +.......-.
T Consensus 617 ~~vg~~-~~l~l~v~v~N~gE~Ay~t~l~~~~p~----~l~~~~v~~~~~~-----~~~~~C~~~~----~n~~~~~~C~ 682 (967)
T 3ije_A 617 IYIGDD-NPLTLIVKAQNQGEGAYEAELIVSIPL----QADFIGVVRNNEA-----LARLSCAFKT----ENQTRQVVCD 682 (967)
T ss_dssp EETTSC-EEEEEEEEEEECSSCEESCEEEEECCT----TEEEEEECCSCTT-----SBCCEEEEEC----SSSCCEEEEE
T ss_pred EEecCC-cEEEEEEEEEeCCCCcccceEEEEeCC----CCCeeeeecccCC-----cccceeecCC----CCCceEEEee
Confidence 334433 477889999998854 23455677775 4777665422111 0235665321 1122355778
Q ss_pred eCCCCCCCCeEEEEEEEEEcc
Q 015446 120 LANPLNTGETATLEILYILTH 140 (406)
Q Consensus 120 Lp~pl~~g~~~~l~v~~~~~~ 140 (406)
|..|++.|+++++.|.+-..+
T Consensus 683 lgnP~~~~~~v~f~l~f~~~~ 703 (967)
T 3ije_A 683 LGNPMKAGTQLLAGLRFSVHQ 703 (967)
T ss_dssp CCSEECTTCEEEEEEEEEECC
T ss_pred CCCCcCCCCEEEEEEEEeccc
Confidence 899999999999998887553
No 9
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens}
Probab=17.51 E-value=6e+02 Score=28.16 Aligned_cols=83 Identities=18% Similarity=0.310 Sum_probs=51.5
Q ss_pred cCCCeEEEEEEEEEEeCCCC-CccEEEEEcCCCCCcceEEEEEEeccCccccceeeeeeeeeecCCCCCCCceEEEEEeC
Q 015446 43 LSTHIVKVFLTLKVENTGKT-SASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKPTQLPDAPNETNYYTIVLA 121 (406)
Q Consensus 43 L~~~~vk~~~~i~vkN~g~~-p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~L~v~~~~~~~~~~~~~~~~I~Lp 121 (406)
+++. -+..++++++|.|+. =.....+.+|+ .|.|..+...... ...+.++... +.......-.|.
T Consensus 625 vg~~-~~l~l~v~v~N~GEdAY~t~l~~~~p~----~l~y~~v~~~~~~-----~~~~~C~~~~----~~~~~~v~C~lg 690 (959)
T 3fcs_A 625 VGAD-NVLELQMDAANEGEGAYEAELAVHLPQ----GAHYMRALSNVEG-----FERLICNQKK----ENETRVVLCELG 690 (959)
T ss_dssp TTSC-CCEEEEEEEEECSSCBTTEEEEEECCT----TEEEEEEEECC-------CCBCCEEEEC----SSSSCEEEEEEE
T ss_pred ecCC-cEEEEEEEEecCCCCcccceEEEEeCC----CCceeeeecccCC-----CcCceEeccC----CCcceeEEeecC
Confidence 4444 368889999999865 34556778885 4777766532111 0234555421 112234566788
Q ss_pred CCCCCCCeEEEEEEEEEc
Q 015446 122 NPLNTGETATLEILYILT 139 (406)
Q Consensus 122 ~pl~~g~~~~l~v~~~~~ 139 (406)
.|+..|+++++.+.+-..
T Consensus 691 nP~~~~~~v~f~l~f~~~ 708 (959)
T 3fcs_A 691 NPMKKNAQIGIAMLVSVG 708 (959)
T ss_dssp TTBCTTEEEEEEEEEEEC
T ss_pred CcccCCCeEEEEEEEEcc
Confidence 999999999988887433
No 10
>1x9l_A CUI-DR1885; copper binding protein, solution ST holo-form, structural proteomics in europe, spine, structur genomics; NMR {Deinococcus radiodurans} SCOP: b.2.10.1 PDB: 2jqa_A
Probab=14.31 E-value=1.7e+02 Score=25.13 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=19.8
Q ss_pred CceEEEEEeCCCCCCCCeEEEEEEE
Q 015446 112 ETNYYTIVLANPLNTGETATLEILY 136 (406)
Q Consensus 112 ~~~~~~I~Lp~pl~~g~~~~l~v~~ 136 (406)
+...-...|..||++|+++.|++.+
T Consensus 106 G~HvML~gL~~~l~~G~~v~lTL~F 130 (149)
T 1x9l_A 106 GDHVMLMGLKRPLKVGETVNITLKA 130 (149)
T ss_dssp SSEEEEEEECSCCCTTEEEEEEECB
T ss_pred ceEEEEeCCCCCCCCCCEEEEEEEE
Confidence 4456677889999999998887765
Done!