BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015447
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 123/452 (27%), Positives = 198/452 (43%), Gaps = 74/452 (16%)
Query: 1 MHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPF--- 57
M R+AG YG + DG+ LL+ DW+ H+ + + S P
Sbjct: 109 MQRSAGLYGSL-IVDPPQGKKEPFHYDGEINLLLSDWW---HQSIHKQEVGLSSKPIRWI 164
Query: 58 --PDGVLINGQGH--------------------------TTFNGDQGKTYMFRISNVGLS 89
P +L+NG+G F+ KTY RI++
Sbjct: 165 GEPQTILLNGRGQFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTAL 224
Query: 90 TSFNFRIQGHTMKLVEVEGSHTIQNIYDS-LDVHVGQSVSVLVTLNQ-PPKDYYIVASTR 147
+ NF I H + +VE +G++ +Q Y S +D++ G+S SVL+T +Q P ++Y++ TR
Sbjct: 225 AALNFAIGNHQLLVVEADGNY-VQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTR 283
Query: 148 F----TKNVLTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNP 203
T LT L + S P S P P P ++ +++ F + +TA P P
Sbjct: 284 ARHPNTPPGLTLLNYLPNSVSKLPTSPP-PQTPAWD---DFDRSKNFTYRITAAMGSPKP 339
Query: 204 QGSFHYGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNI-------- 255
F+ R I L N+ +ING +++A+N +S TP A +N+
Sbjct: 340 PVKFN-------RRIFLLNTQNVINGYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNP 392
Query: 256 -PGIFSVN-SIQSVPSGGASSVATSVMQVNLHEYIEVVFQN------NEKTMQSWHLDGY 307
P +F + I + P+ + + V Q + E ++V+ QN N WHL G+
Sbjct: 393 PPEVFPEDYDIDTPPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGH 452
Query: 308 DFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWER 367
DFWV+GYG G+++AE+ + NL + R+T ++P WT I DN G+W I
Sbjct: 453 DFWVLGYGDGKFSAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPH 512
Query: 368 QYLGQQFYLKVWNAVHSLANEYDIPSNILVCG 399
++G V + IP+ L CG
Sbjct: 513 LHMGMGVVFA--EGVEKVGR---IPTKALACG 539
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 127/320 (39%), Gaps = 55/320 (17%)
Query: 58 PDGVLINGQGH---------TTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEG 108
PD LING+G + N +QGK Y R+ ++ ++ F I GH + ++EV+G
Sbjct: 165 PDATLINGKGRYVGGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDG 224
Query: 109 SHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVLTAT-------AILHY 161
T + D L + GQ S ++ NQP +Y+I A +N L T AIL Y
Sbjct: 225 ELTEPHTVDRLQIFTGQRYSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRY 284
Query: 162 TNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLA 221
+G PT + + Q + + A P G G + L
Sbjct: 285 -------AGAANADPTTSANPNPAQLNEADLHALIDPAAP---GIPTPGAADVNLRFQLG 334
Query: 222 NSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQ 281
S R+ +NG +Y + P L + G S N + +P+G SV +
Sbjct: 335 FSG------GRFTINGTAYESPSVPTLLQI---MSGAQSANDL--LPAG-------SVYE 376
Query: 282 VNLHEYIEVVFQNNE-KTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQ- 339
+ ++ +E+V +HL G+ F VV + TYN + + R
Sbjct: 377 LPRNQVVELVVPAGVLGGPHPFHLHGHAFSVV-------RSAGSSTYNFVNPVKRDVVSL 429
Query: 340 -VYPQSWTVILVSLDNQGMW 358
V T+ V+ DN G W
Sbjct: 430 GVTGDEVTIRFVT-DNPGPW 448
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 127/320 (39%), Gaps = 55/320 (17%)
Query: 58 PDGVLINGQGH---------TTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEG 108
PD LING+G + N +QGK Y R+ ++ ++ F I GH + ++EV+G
Sbjct: 165 PDATLINGKGRYVGGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDG 224
Query: 109 SHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVLTAT-------AILHY 161
T + D L + GQ S ++ NQP +Y+I A +N L T AIL Y
Sbjct: 225 ELTEPHTVDRLQIFTGQRYSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRY 284
Query: 162 TNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLA 221
+G PT + + Q + + A P G G + L
Sbjct: 285 -------AGAANADPTTSANPNPAQLNEADLHALIDPAAP---GIPTPGAADVNLRFQLG 334
Query: 222 NSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQ 281
S R+ +NG +Y + P L + G S N + +P+G SV +
Sbjct: 335 FSG------GRFTINGTAYESPSVPTLLQI---MSGAQSANDL--LPAG-------SVYE 376
Query: 282 VNLHEYIEVVFQNNE-KTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQ- 339
+ ++ +E+V +HL G+ F VV + TYN + + R
Sbjct: 377 LPRNQVVELVVPAGVLGGPHPFHLHGHAFSVV-------RSAGSSTYNFVNPVKRDVVSL 429
Query: 340 -VYPQSWTVILVSLDNQGMW 358
V T+ V+ DN G W
Sbjct: 430 GVTGDEVTIRFVT-DNPGPW 448
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/382 (23%), Positives = 146/382 (38%), Gaps = 92/382 (24%)
Query: 27 DGDFTLLIGDWFKTNHKILRQTLDSGKSL-------PFPDGVLINGQGHTTFNGDQGKTY 79
D + +L + +W+ H ++ S S+ P P +++N + T+ TY
Sbjct: 132 DEELSLSLSEWY---HDLVTDLTKSFMSVYNPTGAEPIPQNLIVNNTMNLTWEVQPDTTY 188
Query: 80 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLV-TLNQPPK 138
+ RI NVG S F I+ H M +VE++G T +N+ D L + V Q +VLV T N K
Sbjct: 189 LLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYTVLVHTKNDTDK 248
Query: 139 DYYIVASTRFTKNV---------LTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQART 189
++ I+ +F + L AT+ + Y + LPT +
Sbjct: 249 NFAIMQ--KFDDTMLDVIPSDLQLNATSYMVYN-----KTAALPT---------QNYVDS 292
Query: 190 FRWNLTANAARPNPQGSFHYGKIN--TTRTIVLANSAPLINGKLRYAVNGISYVNSDTPL 247
L +P + + YG+ + T +V+ N L NG N I+Y P
Sbjct: 293 IDNFLDDFYLQPYEKEAI-YGEPDHVITVDVVMDN---LKNGVNYAFFNNITYTAPKVP- 347
Query: 248 KLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLH-------EYIEVVFQNNEKTMQ 300
++ +V S G + + + N H E +E+V N +
Sbjct: 348 ---------------TLMTVLSSGDQANNSEIYGSNTHTFILEKDEIVEIVLNNQDTGTH 392
Query: 301 SWHLDGYDFWVVGYGSGQWAAEKRRTYNLA------------------DTLTRHTAQVYP 342
+HL G+ F + ++ RTY+ A + R T V P
Sbjct: 393 PFHLHGHAFQTI---------QRDRTYDDALGEVPHSFDPDNHPAFPEYPMRRDTLYVRP 443
Query: 343 QSWTVILVSLDNQGMWNMRSAI 364
QS VI DN G+W I
Sbjct: 444 QSNFVIRFKADNPGVWFFHCHI 465
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 28/167 (16%)
Query: 27 DGDFTLL-IGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQGHT--TFNGD-------QG 76
D D T++ + DW+ K+ G +P D LING G + T D +G
Sbjct: 140 DDDSTVITLADWYHLAAKV-------GAPVPTADATLINGLGRSAATLAADLAVITVTKG 192
Query: 77 KTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQP 136
K Y FR+ ++ ++ F I GH++ ++E + + + DSL + Q S ++ +Q
Sbjct: 193 KRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQIFAAQRYSFVLNADQD 252
Query: 137 PKDYYIVA-STRFTKNVL--TATAILHY--------TNSHSPASGPL 172
+Y+I A T+N T +AIL Y T S +P++ PL
Sbjct: 253 VDNYWIRALPNSGTQNFAGGTNSAILRYDGAAPVEPTTSQTPSTNPL 299
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 28/167 (16%)
Query: 27 DGDFTLL-IGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQGHT--TFNGD-------QG 76
D D T++ + DW+ K+ G +P D LING G + T D +G
Sbjct: 140 DDDSTVITLADWYHLAAKV-------GAPVPTADATLINGLGRSAATLAADLAVITVTKG 192
Query: 77 KTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQP 136
K Y FR+ ++ ++ F I GH++ ++E + + + DSL + Q S ++ +Q
Sbjct: 193 KRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQIFAAQRYSFVLNADQD 252
Query: 137 PKDYYIVA-STRFTKNVL--TATAILHY--------TNSHSPASGPL 172
+Y+I A T+N T +AIL Y T S +P++ PL
Sbjct: 253 VDNYWIRALPNSGTQNFAGGTNSAILRYDGAAPVEPTTSQTPSTNPL 299
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 20/146 (13%)
Query: 29 DFTLLIGDWFKTNHKILRQTLDSGKSLPF-PDGVLINGQGHTT---------FNGDQGKT 78
D + + DW+ K+ G PF D LING G TT QGK
Sbjct: 143 DTVITLADWYHVAAKL-------GPRFPFGSDSTLINGLGRTTGIAPSDLAVIKVTQGKR 195
Query: 79 YMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPK 138
Y FR+ ++ + F I HTM ++E + +T DS+ + Q S ++ +QP
Sbjct: 196 YRFRLVSLSCDPNHTFSIDNHTMTIIEADSINTQPLEVDSIQIFAAQRYSFVLDASQPVD 255
Query: 139 DYYIVASTRFTKNVLTA---TAILHY 161
+Y+I A+ F +AIL Y
Sbjct: 256 NYWIRANPAFGNTGFAGGINSAILRY 281
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 29 DFTLLIGDWFKTNHKILRQTLDSGKSLPF-PDGVLINGQGHT--TFNGD-------QGKT 78
D + + DW+ K+ G + P D LING+G + T D GK
Sbjct: 143 DTVITLVDWYHVAAKL-------GPAFPLGADATLINGKGRSPSTTTADLSVISVTPGKR 195
Query: 79 YMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPK 138
Y FR+ ++ ++ F I GH M ++E + +T + DS+ + Q S ++ NQ
Sbjct: 196 YRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFAAQRYSFVLEANQAVD 255
Query: 139 DYYIVASTRFTKNVLTA---TAILHY 161
+Y+I A+ F T +AIL Y
Sbjct: 256 NYWIRANPNFGNVGFTGGINSAILRY 281
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 15/148 (10%)
Query: 27 DGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQGHTTFNGD----------QG 76
D + I DW+ + +L + P D LING G + N G
Sbjct: 162 DASTVITIADWYHSLSTVLFPNPNKAPPAP--DTTLINGLGRNSANPSAGQLAVVSVQSG 219
Query: 77 KTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQP 136
K Y FRI + ++ F I GH M ++EV+G DSL + GQ SV+V NQ
Sbjct: 220 KRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDGVSHQPLTVDSLTIFAGQRYSVVVEANQA 279
Query: 137 PKDYYIVASTRFTKNVLTA---TAILHY 161
+Y+I A+ +N T +AI Y
Sbjct: 280 VGNYWIRANPSNGRNGFTGGINSAIFRY 307
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 17/127 (13%)
Query: 32 LLIGDWFKTNHKILRQTLDSGKSLPF-PDGVLINGQGHTT---------FNGDQGKTYMF 81
+ + DW+ T ++ G P D LING G + N GK Y F
Sbjct: 146 ITLTDWYHTAARL-------GPRFPLGADATLINGLGRSASTPTAALAVINVQHGKRYRF 198
Query: 82 RISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYY 141
R+ ++ ++ F I GH + ++EV+G ++ + DS+ + Q S ++ NQ +Y+
Sbjct: 199 RLVSISCDPNYTFSIDGHNLTVIEVDGINSQPLLVDSIQIFAAQRYSFVLNANQTVGNYW 258
Query: 142 IVASTRF 148
I A+ F
Sbjct: 259 IRANPNF 265
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 41/183 (22%)
Query: 29 DFTLLIGDWFKTNHKILRQTLDSGKSLPF-PDGVLINGQGH---------TTFNGDQGKT 78
D + + DW+ T K+ G P D LING+G + +GK
Sbjct: 143 DTVITLADWYHTAAKL-------GPRFPAGADATLINGKGRAPSDTSAELSVIKVTKGKR 195
Query: 79 YMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPK 138
FR+ ++ +F F I GH + ++EV+ S++ DS+ + Q S ++ NQ
Sbjct: 196 XRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQPLSVDSIQIFAAQRYSFVLNANQAVD 255
Query: 139 DYYIVASTRF------------------------TKNVLTATAILHYTNSHSPASGPLPT 174
+Y+I A+ F T N T+ L+ N H S P+P
Sbjct: 256 NYWIRANPNFGNVGFNGGINSAILRYDGAPAVEPTTNQTTSVKPLNEVNLHPLVSTPVPG 315
Query: 175 GPT 177
P+
Sbjct: 316 SPS 318
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 77/356 (21%), Positives = 135/356 (37%), Gaps = 59/356 (16%)
Query: 27 DGDFTLL-IGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQGHTTFNG----------DQ 75
D D T++ + DW+ +L + + +G ++ D LI+G G T N +
Sbjct: 141 DDDTTIITLADWYH----VLAKEMGAGGAI-TADSTLIDGLGRTHVNVAAVPLSVITVEV 195
Query: 76 GKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQ 135
GK Y R+ ++ +++F I GH M ++E +G + + D + + Q S ++ NQ
Sbjct: 196 GKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNANQ 255
Query: 136 PPKDYYIVASTRFTKNVLTA---TAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRW 192
P +Y+I A+ +AIL Y + + + P+ T ++ T
Sbjct: 256 PVGNYWIRANPNSGGEGFDGGINSAILRYDGATT--ADPVTVASTVHTKCLIE---TDLH 310
Query: 193 NLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTP--LKLA 250
L+ N NP +N + N + +NG+S+ P L++
Sbjct: 311 PLSRNGVPGNPHQGGADCNLNLSLGFACGN----------FVINGVSFTPPTVPVLLQIC 360
Query: 251 DYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEK-TMQSWHLDGYDF 309
N + +PSG SV+ + + IE+ +HL G+DF
Sbjct: 361 SGAN-------TAADLLPSG-------SVISLPSNSTIEIALPAGAAGGPHPFHLHGHDF 406
Query: 310 WVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTV-ILVSLDNQGMWNMRSAI 364
V + T N D + R + V I DN G W + I
Sbjct: 407 AVS-------ESASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHI 455
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 28/167 (16%)
Query: 27 DGDFTLL-IGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQGHT--TFNGD-------QG 76
D D T++ + DW+ K+ G +P D LING G + T N D +G
Sbjct: 140 DDDSTVITLADWYHLAAKV-------GSPVPTADATLINGLGRSIDTLNADLAVITVTKG 192
Query: 77 KTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQP 136
K Y FR+ ++ + F I GH++ ++E + + DS+ + Q S ++ +Q
Sbjct: 193 KRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQTVDSIQIFAAQRYSFVLNADQD 252
Query: 137 PKDYYIVA-STRFTKNVLTA--TAILHY--------TNSHSPASGPL 172
+Y+I A T+N +AIL Y T S +P++ PL
Sbjct: 253 VGNYWIRALPNSGTRNFDGGVNSAILRYDGAAPVEPTTSQTPSTNPL 299
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 41/182 (22%)
Query: 29 DFTLLIGDWFKTNHKILRQTLDSGKSLP-FPDGVLINGQGHTTFNGD---------QGKT 78
D T+ + DW+ T K+ G + P D LING+G + +GK
Sbjct: 143 DTTITLADWYHTAAKL-------GPAFPNGADSTLINGKGRAPSDSSAQLSVVSVTKGKR 195
Query: 79 YMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPK 138
FR+ ++ +F F I GH ++E + ++ DS+ + Q S + NQ
Sbjct: 196 XRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQPLNTDSIQIFAAQRYSFTLNANQAVD 255
Query: 139 DYYIVASTRF------------------------TKNVLTATAILHYTNSHSPASGPLPT 174
+Y+I A+ F T N T+T L+ TN H S P+P
Sbjct: 256 NYWIRANPNFGNVGFNGGINSAILRYDGAPAVEPTTNQSTSTQPLNETNLHPLVSTPVPG 315
Query: 175 GP 176
P
Sbjct: 316 SP 317
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 22/131 (16%)
Query: 27 DGDFTLL-IGDWFKTNHKILRQTLDSGKSLPF-PDGVLINGQGHTTFNG----------- 73
D D T++ + DW+ T K+ G + P D VLING G F G
Sbjct: 140 DDDTTVITLSDWYHTAAKL-------GPAFPPNADSVLINGLGR--FAGGNASDLAVITV 190
Query: 74 DQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTL 133
+Q K Y FR+ ++ +F F I GH M ++EV+G + DS+ + Q S ++
Sbjct: 191 EQNKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVDGVNHEPLEVDSIQIFASQRYSFVLNA 250
Query: 134 NQPPKDYYIVA 144
Q +Y+I A
Sbjct: 251 TQSVDNYWIRA 261
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 41/183 (22%)
Query: 29 DFTLLIGDWFKTNHKILRQTLDSGKSLPF-PDGVLINGQGHTTFNG---------DQGKT 78
D + + DW+ T K+ G P D LING+G + +GK
Sbjct: 143 DTVITLADWYHTAAKL-------GPRFPGGADATLINGKGRAPSDSVAELSVIKVTKGKR 195
Query: 79 YMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPK 138
Y FR+ ++ + + F I GH + ++EV+ ++ DS+ + Q S ++ NQ
Sbjct: 196 YRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSFVLDANQAVD 255
Query: 139 DYYIVASTRF------------------------TKNVLTATAILHYTNSHSPASGPLPT 174
+Y+I A+ F T N T+ L+ + H S P+P
Sbjct: 256 NYWIRANPNFGNVGFDGGINSAILRYDGAPAVEPTTNQTTSVKPLNEVDLHPLVSTPVPG 315
Query: 175 GPT 177
P+
Sbjct: 316 APS 318
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 128/333 (38%), Gaps = 56/333 (16%)
Query: 56 PFPDGVLINGQGHTTFNGD---------QGKTYMFRISNVGLSTSFNFRIQGHTMKLVEV 106
PF D VLING G+ GK + RI N F + HTM ++
Sbjct: 193 PFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAA 252
Query: 107 EGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYI------VASTRFTKNVLTATAILH 160
+ DSL + VGQ V++ ++ P +Y+ A+ + N A AI H
Sbjct: 253 DMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYWFNVTFGGQAACGGSLNPHPA-AIFH 311
Query: 161 YTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVL 220
Y A G LPT E + ++ R P SF NT +
Sbjct: 312 YAG----APGGLPTD---EGTPPVDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALD 364
Query: 221 ANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVM 280
PL + VNG S +N D + DY I + N+ + V+ +++
Sbjct: 365 LTGTPL----FVWKVNG-SDINVDWGKPIIDY-----ILTGNT--------SYPVSDNIV 406
Query: 281 QVN-LHEYIEVVFQNNEKTMQS----WHLDGYDFWVVGYGSGQWAAEKRR-TYNLADTLT 334
QV+ + ++ + +N+ + S HL G+DF V+G AA ++R ++ A L
Sbjct: 407 QVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLA 466
Query: 335 RHTAQVYPQ---------SWTVILVSLDNQGMW 358
R P+ W ++ DN G W
Sbjct: 467 RLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAW 499
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 17/130 (13%)
Query: 29 DFTLLIGDWFKTNHKILRQTLDSGKSLPF-PDGVLINGQGHTTFNG---------DQGKT 78
D + + DW+ T K+ G P D LING+G + +GK
Sbjct: 143 DTVITLADWYHTAAKL-------GPRFPGGADATLINGKGRAPSDSVAELSVIKVTKGKR 195
Query: 79 YMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPK 138
Y FR+ ++ + + F I GH + ++EV+ ++ DS+ + Q S ++ NQ
Sbjct: 196 YRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSFVLDANQAVD 255
Query: 139 DYYIVASTRF 148
+Y+I A+ F
Sbjct: 256 NYWIRANPNF 265
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 128/333 (38%), Gaps = 56/333 (16%)
Query: 56 PFPDGVLINGQGHTTFNGD---------QGKTYMFRISNVGLSTSFNFRIQGHTMKLVEV 106
PF D VLING G+ GK + RI N F + HTM ++
Sbjct: 193 PFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAA 252
Query: 107 EGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYI------VASTRFTKNVLTATAILH 160
+ DSL + VGQ V++ ++ P +Y+ A+ + N A AI H
Sbjct: 253 DMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYWFNVTFGGQAACGGSLNPHPA-AIFH 311
Query: 161 YTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVL 220
Y A G LPT E + ++ R P SF NT +
Sbjct: 312 YAG----APGGLPTD---EGTPPVDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALD 364
Query: 221 ANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVM 280
PL + VNG S +N D + DY I + N+ + V+ +++
Sbjct: 365 LTGTPL----FVWKVNG-SDINVDWGKPIIDY-----ILTGNT--------SYPVSDNIV 406
Query: 281 QVN-LHEYIEVVFQNNEKTMQS----WHLDGYDFWVVGYGSGQWAAEKRR-TYNLADTLT 334
QV+ + ++ + +N+ + S HL G+DF V+G AA ++R ++ A L
Sbjct: 407 QVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLA 466
Query: 335 RHTAQVYPQ---------SWTVILVSLDNQGMW 358
R P+ W ++ DN G W
Sbjct: 467 RLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAW 499
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 128/333 (38%), Gaps = 56/333 (16%)
Query: 56 PFPDGVLINGQGHTTFNGD---------QGKTYMFRISNVGLSTSFNFRIQGHTMKLVEV 106
PF D VLING G+ GK + RI N F + HTM ++
Sbjct: 193 PFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAA 252
Query: 107 EGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYI------VASTRFTKNVLTATAILH 160
+ DSL + VGQ V++ ++ P +Y+ A+ + N A AI H
Sbjct: 253 DMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYWFNVTFGGQAACGGSLNPHPA-AIFH 311
Query: 161 YTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVL 220
Y A G LPT E + ++ R P SF NT +
Sbjct: 312 YAG----APGGLPTD---EGTPPVDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALD 364
Query: 221 ANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVM 280
PL + VNG S +N D + DY I + N+ + V+ +++
Sbjct: 365 LTGTPL----FVWKVNG-SDINVDWGKPIIDY-----ILTGNT--------SYPVSDNIV 406
Query: 281 QVN-LHEYIEVVFQNNEKTMQS----WHLDGYDFWVVGYGSGQWAAEKRR-TYNLADTLT 334
QV+ + ++ + +N+ + S HL G+DF V+G AA ++R ++ A L
Sbjct: 407 QVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLA 466
Query: 335 RHTAQVYPQ---------SWTVILVSLDNQGMW 358
R P+ W ++ DN G W
Sbjct: 467 RLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAW 499
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 20/151 (13%)
Query: 27 DGDFTLLIGDWFKTNHKILRQTLDSGKSLPF-PDGVLINGQGHTT---------FNGDQG 76
D + + DW+ K+ G P D LING G +T + +G
Sbjct: 141 DESTVITLADWYHVAAKL-------GPRFPKGADSTLINGLGRSTSTPTADLAVISVTKG 193
Query: 77 KTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQP 136
K Y FR+ ++ ++ F I H + ++E +G T DS+ + Q S ++ NQ
Sbjct: 194 KRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVTVDSIQIFAAQRYSFVLNANQD 253
Query: 137 PKDYYIVASTRFTKNVLTA---TAILHYTNS 164
+Y+I A+ F +AIL Y ++
Sbjct: 254 VDNYWIRANPNFGTTGFADGVNSAILRYDDA 284
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 118/323 (36%), Gaps = 64/323 (19%)
Query: 75 QGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLN 134
+G Y R+ NVG+ + F F I HT+ ++ + + D+L + +GQ V+V N
Sbjct: 259 EGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDTLLIGIGQRYDVIVEAN 318
Query: 135 QPPKDYYIV---ASTRFTKN-VLTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTF 190
+Y+I +T T N AT IL Y +S + P G T
Sbjct: 319 AAADNYWIRGNWGTTCSTNNEAANATGILRYDSSS--IANPTSVGTT------------- 363
Query: 191 RWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLA 250
P+G T +A+ P L V G S V+
Sbjct: 364 ------------PRG--------TCEDEPVASLVP----HLALDVGGYSLVDEQVSSAFT 399
Query: 251 DYFN-------------IPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEK 297
+YF P + + +++ + VA + Q N +E V +
Sbjct: 400 NYFTWTINSSSLLLDWSSPTTLKIFNNETIFPTEYNVVA--LEQTNANEEWVVYVIEDLT 457
Query: 298 TMQSW---HLDGYDFWVVGYGSGQW-AAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLD 353
W HL G+DF++V + + + E +NL + R A + + I LD
Sbjct: 458 GFGIWHPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLD 517
Query: 354 NQGMWNMRSAI-WE-RQYLGQQF 374
N G W + I W + L QF
Sbjct: 518 NPGSWLLHCHIAWHASEGLAMQF 540
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 113/311 (36%), Gaps = 62/311 (19%)
Query: 75 QGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLN 134
+G Y R+ NVG+ + F F I HT+ ++ + + D+L + +GQ V+V N
Sbjct: 259 EGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDTLLIGIGQRYDVIVEAN 318
Query: 135 QPPKDYYIV---ASTRFTKN-VLTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTF 190
+Y+I +T T N AT IL Y +S + P G T
Sbjct: 319 AAADNYWIRGNWGTTCSTNNEAANATGILRYDSSS--IANPTSVGTT------------- 363
Query: 191 RWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLA 250
P+G T +A+ P L V G S V+
Sbjct: 364 ------------PRG--------TCEDEPVASLVP----HLALDVGGYSLVDEQVSSAFT 399
Query: 251 DYFN-------------IPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEK 297
+YF P + + +++ + VA + Q N +E V +
Sbjct: 400 NYFTWTINSSSLLLDWSSPTTLKIFNNETIFPTEYNVVA--LEQTNANEEWVVYVIEDLT 457
Query: 298 TMQSW---HLDGYDFWVVGYGSGQW-AAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLD 353
W HL G+DF++V + + + E +NL + R A + + I LD
Sbjct: 458 GFGIWHPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLD 517
Query: 354 NQGMWNMRSAI 364
N G W + I
Sbjct: 518 NPGSWLLHCHI 528
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 115/298 (38%), Gaps = 58/298 (19%)
Query: 59 DGVLINGQGH---------TTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGS 109
D LINGQG + GK Y FR+ + ++ F I GH M +++V+
Sbjct: 167 DATLINGQGRGPSSPSADLAVISVTAGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSI 226
Query: 110 HTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTR-----FTKNVLTATAILHYTNS 164
+ + + ++ Q S ++ NQ +Y+I A+ FT + +AIL Y
Sbjct: 227 NVQPLVVLKIQIYAAQRYSFILNANQAVNNYWIRANPNQGNVGFTNGI--NSAILRY--- 281
Query: 165 HSPASGPLPTGPTYEIHWSMKQA-RTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANS 223
SG T PT S++ +T LTA A GS G +N + N
Sbjct: 282 ----SGAAATQPTTSQTSSVQPLDQTNLHPLTATAV----PGSPVAGGVN-----LAINQ 328
Query: 224 APLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATS-VMQV 282
A NG + V+G S+V P+ ++ I S A +A+ V +
Sbjct: 329 AFNFNGTNHF-VDGASFVPPTVPV-------------LSQIVSGAQSAADLLASGLVYSL 374
Query: 283 NLHEYIEVVFQNNEKTM---QSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHT 337
IE+ F +HL G+ F VV + TYN D + R T
Sbjct: 375 PSDANIEISFPATSAAAGGPHPFHLHGHAFAVV-------RSAGSTTYNYNDPIFRDT 425
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 99 HTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKNVLT 154
+ +K+ G T N+YD+ +V G VSV +N ++ Y+ S N
Sbjct: 561 YNIKVANAAG--TASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGNADP 618
Query: 155 ATAI--------LHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTAN 197
A AI Y N + S +P G T E + KQ T W +N
Sbjct: 619 AKAIGPMYNQVVYQYPNWYYDVS--VPAGKTIEFKFLKKQGSTVTWEGGSN 667
>pdb|1KBW|A Chain A, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|B Chain B, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|C Chain C, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|D Chain D, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|E Chain E, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|F Chain F, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|B Chain B, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|C Chain C, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|D Chain D, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|E Chain E, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|F Chain F, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
Length = 327
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 54/144 (37%), Gaps = 12/144 (8%)
Query: 1 MHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILR--QTLDSGKSLPF- 57
MH A G YG I D +F ++ GD++ K + Q D K++
Sbjct: 142 MHIANGMYGLI----LVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQ 197
Query: 58 PDGVLINGQ-----GHTTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTI 112
P+ V+ NG G G+T + N G + +F + G V VEG I
Sbjct: 198 PEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLI 257
Query: 113 QNIYDSLDVHVGQSVSVLVTLNQP 136
S V G S V ++ P
Sbjct: 258 NENVQSTIVPAGGSAIVEFKVDIP 281
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 14/114 (12%)
Query: 96 IQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKN 151
+ G + + T N+YD+ +V G VSV +N ++ Y+ S N
Sbjct: 556 VAGGNYNIKVANAAGTASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGN 615
Query: 152 VLTATAI--------LHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTAN 197
A AI Y N + S +P G T E + KQ T W +N
Sbjct: 616 WDPAKAIGPMYNQVVYQYPNWYYDVS--VPAGKTIEFKFLKKQGSTVTWEGGSN 667
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 14/114 (12%)
Query: 96 IQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKN 151
+ G + + T N+YD+ +V G VSV +N ++ Y+ S N
Sbjct: 556 VAGGNYNIKVANAAGTASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGN 615
Query: 152 VLTATAI--------LHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTAN 197
A AI Y N + S +P G T E + KQ T W +N
Sbjct: 616 WDPAKAIGPMYNQVVYQYPNWYYDVS--VPAGKTIEFKFLKKQGSTVTWEGGSN 667
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 99 HTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKNVLT 154
+ +K+ G T N+YD+ +V G VSV +N ++ Y+ S N
Sbjct: 561 YNIKVANAAG--TASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDP 618
Query: 155 ATAI--------LHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTAN 197
A AI Y N + S +P G T E + KQ T W +N
Sbjct: 619 AKAIGPMYNQVVYQYPNWYYDVS--VPAGKTIEFKFLKKQGSTVTWEGGSN 667
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 14/114 (12%)
Query: 96 IQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKN 151
+ G + + T N+YD+ +V G VSV +N ++ Y+ S N
Sbjct: 556 VAGGNYNIKVANAAGTASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGN 615
Query: 152 VLTATAI--------LHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTAN 197
A AI Y N + S +P G T E + KQ T W +N
Sbjct: 616 WDPAKAIGPMYNQVVYQYPNWYYDVS--VPAGKTIEFKFLKKQGSTVTWEGGSN 667
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 99 HTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKNVLT 154
+ +K+ G T N+YD+ +V G VSV +N ++ Y+ S N
Sbjct: 561 YNIKVANAAG--TASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDP 618
Query: 155 ATAI--------LHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTAN 197
A AI Y N + S +P G T E + KQ T W +N
Sbjct: 619 AKAIGPMYNQVVYQYPNWYYDVS--VPAGKTIEFKFLKKQGSTVTWEGGSN 667
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 99 HTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKNVLT 154
+ +K+ G T N+YD+ +V G VSV +N ++ Y+ S N
Sbjct: 561 YNIKVANAAG--TASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDP 618
Query: 155 ATAI--------LHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTAN 197
A AI Y N + S +P G T E + KQ T W +N
Sbjct: 619 AKAIGPMYNQVVYQYPNWYYDVS--VPAGKTIEFKFLKKQGSTVTWEGGSN 667
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 99 HTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKNVLT 154
+ +K+ G T N+YD+ +V G VSV +N ++ Y+ S N
Sbjct: 561 YNIKVANAAG--TASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDP 618
Query: 155 ATAI--------LHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTAN 197
A AI Y N + S +P G T E + KQ T W +N
Sbjct: 619 AKAIGPMYNQVVYQYPNWYYDVS--VPAGKTIEFKFLKKQGSTVTWEGGSN 667
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 99 HTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKNVLT 154
+ +K+ G T N+YD+ +V G VSV +N ++ Y+ S N
Sbjct: 561 YNIKVANAAG--TASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDP 618
Query: 155 ATAI--------LHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTAN 197
A AI Y N + S +P G T E + KQ T W +N
Sbjct: 619 AKAIGPMYNQVVYQYPNWYYDVS--VPAGKTIEFKFLKKQGSTVTWEGGSN 667
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 99 HTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKNVLT 154
+ +K+ G T N+YD+ +V G VSV +N ++ Y+ S N
Sbjct: 561 YNIKVANAAG--TASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDP 618
Query: 155 ATAI--------LHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTAN 197
A AI Y N + S +P G T E + KQ T W +N
Sbjct: 619 AKAIGPMYNQVVYQYPNWYYDVS--VPAGKTIEFKFLKKQGSTVTWEGGSN 667
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 14/114 (12%)
Query: 96 IQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKN 151
+ G + + T N+YD+ +V G VSV +N ++ Y+ S N
Sbjct: 556 VAGGNYNIKVANAAGTASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGN 615
Query: 152 VLTATAI--------LHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTAN 197
A AI Y N + S +P G T E + KQ T W +N
Sbjct: 616 WDPAKAIGPMYNQVVYQYPNWYYDVS--VPAGKTIEFKFLKKQGSTVTWEGGSN 667
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 99 HTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKNVLT 154
+ +K+ G T N+YD+ +V G VSV +N ++ Y+ S N
Sbjct: 561 YNIKVANAAG--TASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDP 618
Query: 155 ATAI--------LHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTAN 197
A AI Y N + S +P G T E + KQ T W +N
Sbjct: 619 AKAIGPMYNQVVYQYPNWYYDVS--VPAGKTIEFKFLKKQGSTVTWEGGSN 667
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 99 HTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKNVLT 154
+ +K+ G T N+YD+ +V G VSV +N ++ Y+ S N
Sbjct: 561 YNIKVANAAG--TASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDP 618
Query: 155 ATAI--------LHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTAN 197
A AI Y N + S +P G T E + KQ T W +N
Sbjct: 619 AKAIGPMYNQVVYQYPNWYYDVS--VPAGKTIEFKFLKKQGSTVTWEGGSN 667
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 99 HTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKNVLT 154
+ +K+ G T N+YD+ +V G VSV +N ++ Y+ S N
Sbjct: 561 YNIKVANAAG--TASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDP 618
Query: 155 ATAI--------LHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTAN 197
A AI Y N + S +P G T E + KQ T W +N
Sbjct: 619 AKAIGPMYNQVVYQYPNWYYDVS--VPAGKTIEFKFLKKQGSTVTWEGGSN 667
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 99 HTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKNVLT 154
+ +K+ G T N+YD+ +V G VSV +N ++ Y+ S N
Sbjct: 561 YNIKVANAAG--TASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDP 618
Query: 155 ATAI--------LHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTAN 197
A AI Y N + S +P G T E + KQ T W +N
Sbjct: 619 AKAIGPMYNQVVYQYPNWYYDVS--VPAGKTIEFKFLKKQGSTVTWEGGSN 667
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 99 HTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKNVLT 154
+ +K+ G T N+YD+ +V G VSV +N ++ Y+ S N
Sbjct: 561 YNIKVANAAG--TASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDP 618
Query: 155 ATAI--------LHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTAN 197
A AI Y N + S +P G T E + KQ T W +N
Sbjct: 619 AKAIGPMYNQVVYQYPNWYYDVS--VPAGKTIEFKFLKKQGSTATWEGGSN 667
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,840,436
Number of Sequences: 62578
Number of extensions: 540354
Number of successful extensions: 1264
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1207
Number of HSP's gapped (non-prelim): 66
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)