Query 015447
Match_columns 406
No_of_seqs 216 out of 1303
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:23:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015447.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015447hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02835 oxidoreductase 100.0 2.1E-83 4.5E-88 652.8 44.5 406 1-406 134-539 (539)
2 PLN02991 oxidoreductase 100.0 1.4E-82 3E-87 643.9 44.1 404 1-405 133-537 (543)
3 PLN02354 copper ion binding / 100.0 1.8E-82 3.9E-87 646.7 44.2 404 1-405 132-545 (552)
4 PLN02792 oxidoreductase 100.0 1.2E-81 2.5E-86 637.9 43.7 403 1-404 121-529 (536)
5 PLN00044 multi-copper oxidase- 100.0 1.5E-80 3.3E-85 632.3 42.9 404 1-405 134-561 (596)
6 PLN02168 copper ion binding / 100.0 2.6E-80 5.7E-85 628.3 43.4 400 1-400 131-543 (545)
7 KOG1263 Multicopper oxidases [ 100.0 1.1E-75 2.3E-80 590.6 42.5 405 1-405 133-562 (563)
8 TIGR03389 laccase laccase, pla 100.0 7.9E-74 1.7E-78 586.9 44.2 387 4-398 111-539 (539)
9 TIGR03388 ascorbase L-ascorbat 100.0 2.9E-73 6.3E-78 582.4 41.2 382 1-399 107-539 (541)
10 PLN02604 oxidoreductase 100.0 6.8E-73 1.5E-77 581.4 42.8 387 1-403 130-566 (566)
11 PLN02191 L-ascorbate oxidase 100.0 7.4E-73 1.6E-77 580.0 41.8 386 1-403 129-566 (574)
12 TIGR03390 ascorbOXfungal L-asc 100.0 2.1E-69 4.5E-74 552.5 39.1 371 1-383 116-536 (538)
13 TIGR01480 copper_res_A copper- 100.0 2E-53 4.4E-58 434.7 35.1 323 1-378 148-586 (587)
14 PRK10965 multicopper oxidase; 100.0 2.2E-51 4.7E-56 416.7 31.9 310 1-379 151-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 9.5E-51 2E-55 408.6 31.2 300 2-381 152-470 (471)
16 COG2132 SufI Putative multicop 100.0 7.1E-42 1.5E-46 345.3 29.9 310 2-379 137-449 (451)
17 PF07731 Cu-oxidase_2: Multico 100.0 3.8E-32 8.3E-37 231.1 10.9 107 274-380 30-136 (138)
18 PF00394 Cu-oxidase: Multicopp 100.0 5.4E-31 1.2E-35 229.2 12.9 137 28-164 1-159 (159)
19 TIGR02376 Cu_nitrite_red nitri 99.9 9.6E-25 2.1E-29 209.1 11.7 159 2-165 133-299 (311)
20 TIGR02376 Cu_nitrite_red nitri 99.6 1.9E-14 4.2E-19 138.1 20.9 242 58-379 47-296 (311)
21 PLN02604 oxidoreductase 99.1 9.3E-10 2E-14 114.1 13.0 88 280-381 57-145 (566)
22 TIGR03389 laccase laccase, pla 99.0 1.5E-08 3.1E-13 104.9 20.0 236 59-364 23-264 (539)
23 PLN02835 oxidoreductase 99.0 2E-08 4.4E-13 103.3 20.7 222 59-361 49-276 (539)
24 PLN02354 copper ion binding / 99.0 4.6E-08 1E-12 100.9 19.9 231 59-363 47-283 (552)
25 PLN02792 oxidoreductase 98.9 5.6E-08 1.2E-12 99.9 19.0 225 59-361 36-267 (536)
26 PLN02168 copper ion binding / 98.9 1E-07 2.2E-12 98.1 20.1 216 59-354 46-267 (545)
27 PLN02991 oxidoreductase 98.9 7.2E-08 1.6E-12 99.0 18.4 223 59-360 48-276 (543)
28 PF07732 Cu-oxidase_3: Multico 98.9 7.1E-09 1.5E-13 85.1 8.6 90 278-381 26-116 (117)
29 TIGR03390 ascorbOXfungal L-asc 98.9 1.6E-07 3.4E-12 97.1 19.7 234 59-355 28-266 (538)
30 TIGR01480 copper_res_A copper- 98.8 8.1E-07 1.8E-11 92.2 21.2 247 59-364 65-336 (587)
31 PLN00044 multi-copper oxidase- 98.8 7.1E-07 1.5E-11 92.4 20.5 234 59-359 49-291 (596)
32 PRK10883 FtsI repressor; Provi 98.8 4.8E-07 1E-11 91.9 18.1 223 59-362 66-295 (471)
33 PLN02191 L-ascorbate oxidase 98.7 1.8E-06 3.9E-11 89.8 20.0 251 58-359 42-300 (574)
34 PRK10965 multicopper oxidase; 98.6 3.7E-06 7.9E-11 86.5 20.5 224 59-362 66-298 (523)
35 TIGR03388 ascorbase L-ascorbat 98.6 2.3E-07 5.1E-12 96.0 9.9 88 280-381 34-122 (541)
36 PF00394 Cu-oxidase: Multicopp 98.5 6.3E-07 1.4E-11 77.8 8.2 91 277-378 59-155 (159)
37 KOG1263 Multicopper oxidases [ 98.3 7.9E-05 1.7E-09 76.7 20.6 228 59-364 48-287 (563)
38 TIGR03095 rusti_cyanin rusticy 98.3 5.1E-06 1.1E-10 71.0 9.2 88 278-378 52-147 (148)
39 PF07731 Cu-oxidase_2: Multico 98.2 2.1E-05 4.5E-10 66.4 10.9 76 70-147 35-121 (138)
40 TIGR02656 cyanin_plasto plasto 97.9 6.2E-05 1.3E-09 59.8 8.2 82 278-378 17-98 (99)
41 TIGR03096 nitroso_cyanin nitro 97.7 0.00021 4.6E-09 59.3 7.8 59 279-364 62-120 (135)
42 COG2132 SufI Putative multicop 97.2 0.02 4.3E-07 58.3 17.9 220 59-364 53-275 (451)
43 PF13473 Cupredoxin_1: Cupredo 97.2 0.0013 2.7E-08 52.7 7.1 63 278-369 35-97 (104)
44 PF07732 Cu-oxidase_3: Multico 97.1 0.00062 1.3E-08 55.8 4.1 85 58-147 14-100 (117)
45 PF00127 Copper-bind: Copper b 96.7 0.018 3.8E-07 45.6 9.4 83 278-379 17-99 (99)
46 PRK02888 nitrous-oxide reducta 96.6 0.0095 2.1E-07 61.7 9.3 76 277-379 554-633 (635)
47 TIGR03095 rusti_cyanin rusticy 96.6 0.0092 2E-07 51.0 7.8 89 56-145 39-132 (148)
48 PRK02710 plastocyanin; Provisi 96.5 0.017 3.7E-07 47.5 8.2 71 279-378 48-118 (119)
49 TIGR03096 nitroso_cyanin nitro 96.4 0.014 3E-07 48.6 7.4 66 62-145 53-119 (135)
50 TIGR02375 pseudoazurin pseudoa 96.2 0.028 6E-07 45.9 8.0 77 278-383 15-91 (116)
51 TIGR02657 amicyanin amicyanin. 94.5 0.25 5.4E-06 37.6 7.7 71 279-378 12-82 (83)
52 TIGR03102 halo_cynanin halocya 94.1 0.5 1.1E-05 38.4 9.0 73 278-378 42-114 (115)
53 PF13473 Cupredoxin_1: Cupredo 94.1 0.29 6.4E-06 38.9 7.6 63 65-145 30-93 (104)
54 TIGR02866 CoxB cytochrome c ox 93.8 0.33 7.2E-06 43.7 8.3 78 278-383 117-195 (201)
55 COG4454 Uncharacterized copper 93.4 0.25 5.5E-06 41.9 6.3 93 280-379 65-157 (158)
56 PF00116 COX2: Cytochrome C ox 92.8 1.4 3E-05 36.2 9.7 73 278-378 46-119 (120)
57 PF06525 SoxE: Sulfocyanin (So 90.9 0.75 1.6E-05 40.7 6.5 85 59-145 74-170 (196)
58 COG1622 CyoA Heme/copper-type 90.5 1.2 2.7E-05 41.3 7.8 78 278-383 137-215 (247)
59 COG3794 PetE Plastocyanin [Ene 89.2 2.4 5.2E-05 35.1 7.8 73 279-379 55-127 (128)
60 TIGR02656 cyanin_plasto plasto 89.0 2.1 4.5E-05 33.7 7.2 66 71-145 19-85 (99)
61 PF12690 BsuPI: Intracellular 88.0 7.5 0.00016 29.5 9.3 66 78-144 3-82 (82)
62 PF14344 DUF4397: Domain of un 87.0 14 0.0003 29.9 11.3 21 80-100 3-24 (122)
63 TIGR01433 CyoA cytochrome o ub 86.0 2.2 4.8E-05 39.1 6.4 78 278-383 139-217 (226)
64 COG4454 Uncharacterized copper 82.7 2.9 6.2E-05 35.6 5.1 71 71-145 65-141 (158)
65 MTH00140 COX2 cytochrome c oxi 81.5 7.6 0.00016 35.6 8.0 77 278-382 140-217 (228)
66 TIGR03094 sulfo_cyanin sulfocy 81.5 19 0.00041 31.6 9.7 95 278-379 85-185 (195)
67 PRK02888 nitrous-oxide reducta 81.4 8 0.00017 40.7 8.8 58 71-145 557-616 (635)
68 MTH00047 COX2 cytochrome c oxi 81.2 13 0.00028 33.2 9.1 76 278-381 116-192 (194)
69 PF06525 SoxE: Sulfocyanin (So 79.7 15 0.00033 32.6 8.8 95 279-380 87-187 (196)
70 PTZ00047 cytochrome c oxidase 78.6 12 0.00026 32.2 7.7 76 278-381 73-149 (162)
71 TIGR01432 QOXA cytochrome aa3 78.5 8.1 0.00017 35.2 7.1 78 278-383 130-208 (217)
72 MTH00129 COX2 cytochrome c oxi 75.1 11 0.00024 34.6 7.1 77 278-382 140-217 (230)
73 PF00127 Copper-bind: Copper b 73.3 11 0.00025 29.4 5.9 61 71-145 19-85 (99)
74 PF10633 NPCBM_assoc: NPCBM-as 73.2 34 0.00073 25.3 8.2 65 73-146 1-75 (78)
75 MTH00098 COX2 cytochrome c oxi 73.0 14 0.00031 33.9 7.2 77 278-382 140-217 (227)
76 MTH00023 COX2 cytochrome c oxi 71.9 16 0.00034 33.9 7.2 78 278-383 151-229 (240)
77 PRK02710 plastocyanin; Provisi 71.3 14 0.00031 30.1 6.2 57 71-145 49-105 (119)
78 PF01835 A2M_N: MG2 domain; I 69.6 38 0.00082 26.1 8.1 71 72-147 10-86 (99)
79 PF00116 COX2: Cytochrome C ox 65.4 74 0.0016 25.9 11.1 58 70-146 47-104 (120)
80 MTH00139 COX2 cytochrome c oxi 65.4 26 0.00056 32.1 7.3 78 277-382 139-217 (226)
81 TIGR02695 azurin azurin. Azuri 65.2 36 0.00079 28.0 7.2 76 70-145 17-111 (125)
82 MTH00008 COX2 cytochrome c oxi 65.0 36 0.00077 31.3 8.1 77 278-382 140-217 (228)
83 MTH00154 COX2 cytochrome c oxi 64.8 31 0.00067 31.7 7.6 77 278-382 140-217 (227)
84 MTH00038 COX2 cytochrome c oxi 64.5 26 0.00057 32.1 7.1 77 278-382 140-217 (229)
85 MTH00185 COX2 cytochrome c oxi 64.3 39 0.00084 31.1 8.1 77 277-381 139-216 (230)
86 PF04151 PPC: Bacterial pre-pe 62.6 46 0.00099 23.9 6.8 63 71-145 7-69 (70)
87 MTH00076 COX2 cytochrome c oxi 61.0 29 0.00062 31.9 6.7 77 278-382 140-217 (228)
88 PF11142 DUF2917: Protein of u 60.6 30 0.00065 24.7 5.3 46 71-128 2-47 (63)
89 COG1470 Predicted membrane pro 60.5 72 0.0016 32.3 9.6 85 71-164 391-483 (513)
90 MTH00117 COX2 cytochrome c oxi 59.9 50 0.0011 30.2 8.1 77 278-382 140-217 (227)
91 PF07691 PA14: PA14 domain; I 59.2 65 0.0014 26.5 8.2 60 71-135 54-120 (145)
92 MTH00027 COX2 cytochrome c oxi 58.5 40 0.00087 31.6 7.3 77 278-382 174-251 (262)
93 MTH00168 COX2 cytochrome c oxi 57.8 41 0.00089 30.8 7.1 78 277-382 139-217 (225)
94 MTH00051 COX2 cytochrome c oxi 57.0 42 0.00092 30.9 7.1 78 277-382 143-221 (234)
95 PRK10525 cytochrome o ubiquino 56.7 35 0.00075 33.0 6.6 74 278-379 151-225 (315)
96 smart00758 PA14 domain in bact 56.1 91 0.002 25.4 8.5 60 71-135 52-112 (136)
97 MTH00080 COX2 cytochrome c oxi 55.1 53 0.0011 30.2 7.3 77 278-382 143-220 (231)
98 PF11614 FixG_C: IG-like fold 53.8 52 0.0011 26.5 6.5 47 78-133 34-82 (118)
99 PF14734 DUF4469: Domain of un 52.1 83 0.0018 24.9 7.1 37 112-148 51-87 (102)
100 PF07705 CARDB: CARDB; InterP 51.5 1E+02 0.0022 23.2 9.9 67 72-147 14-84 (101)
101 TIGR02695 azurin azurin. Azuri 50.1 1.1E+02 0.0024 25.2 7.6 96 277-377 15-124 (125)
102 TIGR02866 CoxB cytochrome c ox 42.9 1.1E+02 0.0023 27.4 7.3 58 70-146 118-175 (201)
103 PF10989 DUF2808: Protein of u 41.6 33 0.00071 29.0 3.6 25 340-364 99-127 (146)
104 COG4263 NosZ Nitrous oxide red 39.6 1E+02 0.0022 31.2 6.9 37 337-373 593-633 (637)
105 PRK10378 inactive ferrous ion 38.4 2.5E+02 0.0054 27.9 9.5 84 60-164 33-118 (375)
106 TIGR03094 sulfo_cyanin sulfocy 35.8 1.4E+02 0.0029 26.4 6.3 101 60-163 74-186 (195)
107 PF09394 Inhibitor_I42: Chagas 34.2 2E+02 0.0044 21.6 7.7 79 281-373 2-82 (92)
108 COG3794 PetE Plastocyanin [Ene 33.2 1.7E+02 0.0036 24.3 6.3 59 71-146 56-114 (128)
109 TIGR03102 halo_cynanin halocya 33.0 2E+02 0.0044 23.2 6.7 58 71-145 44-101 (115)
110 TIGR02745 ccoG_rdxA_fixG cytoc 32.1 1.4E+02 0.003 30.3 6.8 49 77-133 348-397 (434)
111 PRK05461 apaG CO2+/MG2+ efflux 31.1 1.7E+02 0.0036 24.2 6.0 50 78-130 32-85 (127)
112 PF04379 DUF525: Protein of un 30.1 2.1E+02 0.0046 22.0 6.1 50 78-130 15-68 (90)
113 PF14524 Wzt_C: Wzt C-terminal 29.7 2.6E+02 0.0057 22.4 7.3 82 62-146 20-107 (142)
114 PF15415 DUF4622: Protein of u 27.7 1.5E+02 0.0032 27.3 5.4 43 69-113 94-138 (310)
115 PF14392 zf-CCHC_4: Zinc knuck 23.8 1.1E+02 0.0024 20.4 3.1 40 330-369 4-44 (49)
116 PF12565 DUF3747: Protein of u 23.0 2.2E+02 0.0047 25.1 5.4 14 76-89 108-121 (181)
117 COG2954 Uncharacterized protei 22.4 1.1E+02 0.0023 25.9 3.3 17 71-87 31-47 (156)
118 cd00305 Cu-Zn_Superoxide_Dismu 22.2 1.2E+02 0.0026 25.5 3.8 23 285-307 26-48 (144)
119 PF10636 hemP: Hemin uptake pr 22.2 63 0.0014 20.7 1.5 17 71-87 16-32 (38)
120 PF06236 MelC1: Tyrosinase co- 21.8 1.5E+02 0.0033 24.3 4.0 41 71-111 46-91 (125)
121 PF05506 DUF756: Domain of unk 21.8 3.6E+02 0.0077 20.3 8.5 58 77-145 20-77 (89)
122 PF05938 Self-incomp_S1: Plant 21.5 2.3E+02 0.0049 22.3 5.1 40 337-379 28-69 (110)
123 PRK10378 inactive ferrous ion 21.0 3.7E+02 0.0081 26.7 7.3 72 280-380 46-117 (375)
124 cd01272 FE65_N Fe65 Phosphotyr 20.9 2.3E+02 0.005 23.6 4.9 38 299-364 75-112 (138)
125 PF11182 AlgF: Alginate O-acet 20.6 5.7E+02 0.012 22.5 7.7 30 78-108 28-58 (181)
126 PF13464 DUF4115: Domain of un 20.3 2.8E+02 0.0061 20.2 5.1 20 92-111 40-59 (77)
127 COG3822 ABC-type sugar transpo 20.0 1.7E+02 0.0037 26.0 4.2 52 74-129 114-165 (225)
No 1
>PLN02835 oxidoreductase
Probab=100.00 E-value=2.1e-83 Score=652.76 Aligned_cols=406 Identities=83% Similarity=1.370 Sum_probs=316.4
Q ss_pred CceecceeEEEEEeCCCCCCCCCCCCCCeeEEEEeeeecCcHHHHHHHhcCCCCCCCCceEEEcCCCCceEEEecCCEEE
Q 015447 1 MHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQGHTTFNGDQGKTYM 80 (406)
Q Consensus 1 ~Q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~~v~~G~~~r 80 (406)
.|+++||+|+|||+++++.+.||..+|+|++|+|+||++.+...+...+..+...+++|++||||+..+.+.|++||+||
T Consensus 134 ~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~~v~~G~~yR 213 (539)
T PLN02835 134 FHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQRLDSGKVLPFPDGVLINGQTQSTFSGDQGKTYM 213 (539)
T ss_pred chhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHHhhcCCCCCCCceEEEccccCceEEECCCCEEE
Confidence 49999999999999866555677778999999999999998777666666666678899999999999999999999999
Q ss_pred EEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEEecccCCCcceEEEEE
Q 015447 81 FRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVLTATAILH 160 (406)
Q Consensus 81 lRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~~~~~~~~~~~~ail~ 160 (406)
|||||+|+.+.+.|+|+||+|+|||+||++++|+.++.|.|++||||||+|++++++|+||||+...+........|||+
T Consensus 214 lRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~~~~~~~ail~ 293 (539)
T PLN02835 214 FRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTRQILTATAVLH 293 (539)
T ss_pred EEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccCCCcceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999988899999987543333457899999
Q ss_pred eeCCCCCCCCCCCCCCCCchhhhhhhhhhcccccccCCCCCCCCCCCccCcccceEEEEEeccccccCCeEeEEEcCccc
Q 015447 161 YTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYAVNGISY 240 (406)
Q Consensus 161 y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNg~~~ 240 (406)
|.++..+.+.++|..|..+.......+....+.+.+....+.|..++.......++++.+.......+|...|++||++|
T Consensus 294 Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~iN~~s~ 373 (539)
T PLN02835 294 YSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLINGKQRYAVNGVSY 373 (539)
T ss_pred ECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCCceEEEeccccccCCeEEEEECCccc
Confidence 98865333333443332111111222222222333333333332211111123355554443222234678999999999
Q ss_pred cCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCC
Q 015447 241 VNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWA 320 (406)
Q Consensus 241 ~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~ 320 (406)
..|++|+|.+.+++.++.|+.+.....+.+...+.+++++.++.|++|+|+|+|.+...||||||||+||||++|.|.|+
T Consensus 374 ~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg~G~g~~~ 453 (539)
T PLN02835 374 VNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWT 453 (539)
T ss_pred CCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEeccCCCCC
Confidence 98999998766655566666443222233323455688999999999999999999899999999999999999999997
Q ss_pred ccccccCCCCCCCccceEEeCCCCEEEEEEEecCceeeEEeeeehhhhhcccEEEEEEecccccccccCCCCCCcccccc
Q 015447 321 AEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSLANEYDIPSNILVCGK 400 (406)
Q Consensus 321 ~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W~~HCHi~~H~~~GM~~~~~v~~~~~~~~~~~~~P~~~~~c~~ 400 (406)
......+|+.||++|||+.||++||++|||+|||||+|+|||||++|+.+||+++|.|.++.+...+..++|++++.||.
T Consensus 454 ~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~ 533 (539)
T PLN02835 454 PAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLCGK 533 (539)
T ss_pred cccccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCcccccccc
Confidence 65545678999999999999999999999999999999999999999999999999999875544445789999999998
Q ss_pred cCCCCC
Q 015447 401 AVGHHP 406 (406)
Q Consensus 401 ~~~~~~ 406 (406)
-++.+|
T Consensus 534 ~~~~~~ 539 (539)
T PLN02835 534 AIGRHP 539 (539)
T ss_pred CccCCC
Confidence 887654
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=1.4e-82 Score=643.85 Aligned_cols=404 Identities=61% Similarity=1.064 Sum_probs=315.5
Q ss_pred CceecceeEEEEEeCCCCCCCCCCCCCCeeEEEEeeeecCcHHHHHHHhcCCCCCCCCceEEEcCCCCc-eEEEecCCEE
Q 015447 1 MHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQGHT-TFNGDQGKTY 79 (406)
Q Consensus 1 ~Q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~-~~~v~~G~~~ 79 (406)
.|+++||+|+|||+++++++.||..+|+|++|+|+||+|++...+...+..+...+++|++|||||+.. .+.|++||+|
T Consensus 133 ~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~v~~G~~y 212 (543)
T PLN02991 133 FHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQLDNGGKLPLPDGILINGRGSGATLNIEPGKTY 212 (543)
T ss_pred hhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHHhhcCCCCCCCCEEEEccCCCCceEEECCCCEE
Confidence 488999999999999876667776778999999999999987666555556666779999999999864 4999999999
Q ss_pred EEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEEecccCCCcceEEEE
Q 015447 80 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVLTATAIL 159 (406)
Q Consensus 80 rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~~~~~~~~~~~~ail 159 (406)
||||||+|+.+.+.|+|+||+|+|||+||.+++|..++.|.|++||||||+|++++++|+||||+...+........|||
T Consensus 213 RlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~~~~~~~AIl 292 (543)
T PLN02991 213 RLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTSKILITTGVL 292 (543)
T ss_pred EEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCCCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999875444445789999
Q ss_pred EeeCCCCCCCCCCCCCCCCchhhhhhhhhhcccccccCCCCCCCCCCCccCcccceEEEEEeccccccCCeEeEEEcCcc
Q 015447 160 HYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYAVNGIS 239 (406)
Q Consensus 160 ~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNg~~ 239 (406)
+|+++..+.+.+.|..|. +..+..++....+..|.+....+.|...+.......++++.+........+...|+|||.+
T Consensus 293 ~Y~g~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s 371 (543)
T PLN02991 293 HYSNSAGPVSGPIPDGPI-QLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAGNIEGKQRYAVNSAS 371 (543)
T ss_pred EeCCCCCCCCCCCCCCCc-cccccccchhhhhhcccCCCCCCCCCccccccccccceeEEEeecccccCceEEEEECCCc
Confidence 999875322223333332 2222222221222344443333344322211112344444443321122467799999999
Q ss_pred ccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCC
Q 015447 240 YVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQW 319 (406)
Q Consensus 240 ~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~ 319 (406)
|..|++|+|.+.++...|.|+.+.....|.+......++++.++.|++|||+|+|.+...||||||||+||||++|.|.|
T Consensus 372 ~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~f 451 (543)
T PLN02991 372 FYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWEDIVQTWHLDGYSFYVVGMELGKW 451 (543)
T ss_pred cCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCCCCCCCeeeCCcceEEEEeCCCCC
Confidence 99999999987776667777654222222222233356788999999999999999889999999999999999999999
Q ss_pred CccccccCCCCCCCccceEEeCCCCEEEEEEEecCceeeEEeeeehhhhhcccEEEEEEecccccccccCCCCCCccccc
Q 015447 320 AAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSLANEYDIPSNILVCG 399 (406)
Q Consensus 320 ~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W~~HCHi~~H~~~GM~~~~~v~~~~~~~~~~~~~P~~~~~c~ 399 (406)
++.+...+|+.||++|||+.||++||++|||+|||||+|+|||||..|+.+||++++.|.++.+...+..++|++++.||
T Consensus 452 ~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg 531 (543)
T PLN02991 452 SAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCG 531 (543)
T ss_pred CcccccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCccc
Confidence 87665678999999999999999999999999999999999999998999999999999876665554678999999998
Q ss_pred ccCCCC
Q 015447 400 KAVGHH 405 (406)
Q Consensus 400 ~~~~~~ 405 (406)
.-++.+
T Consensus 532 ~~~~~~ 537 (543)
T PLN02991 532 RATGHH 537 (543)
T ss_pred cCCCCC
Confidence 777643
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=1.8e-82 Score=646.70 Aligned_cols=404 Identities=56% Similarity=1.011 Sum_probs=312.8
Q ss_pred CceecceeEEEEEeCCCCCCCCCCCCCCeeEEEEeeeecCcHHHHHHHhcCCCCCCCCceEEEcCCCC-------ceEEE
Q 015447 1 MHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQGH-------TTFNG 73 (406)
Q Consensus 1 ~Q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~-------~~~~v 73 (406)
+|+++||+|+|||+++++.+.||+.+|+|++|+|+||||++...+..++.++...+++|++||||++. +.+.|
T Consensus 132 ~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~~~~~~~~~v 211 (552)
T PLN02354 132 MHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKKFLDSGRTLGRPDGVLINGKSGKGDGKDEPLFTM 211 (552)
T ss_pred ceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHHHHhcCCCCCCCCeEEEeCCcCCCCCCCceEEEE
Confidence 59999999999999987666788777899999999999998777766666665556789999999962 34899
Q ss_pred ecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEEecccCCCc
Q 015447 74 DQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVL 153 (406)
Q Consensus 74 ~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~~~~~~~~~ 153 (406)
++||+|||||||+|+...+.|+||||+|+|||+||++++|+.++.|.|++||||||+|++++++|+|||++...+.....
T Consensus 212 ~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~~~~ 291 (552)
T PLN02354 212 KPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLKKVL 291 (552)
T ss_pred CCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999864444445
Q ss_pred ceEEEEEeeCCCCCCCCCCCCCCCCchhhhhhhhhhcccccccCCCCCCCCCCCccCcccceEEEEEeccccccCCeEeE
Q 015447 154 TATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRY 233 (406)
Q Consensus 154 ~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (406)
...|||+|.++..+.+.+.|..|. +..+....+.+++.++.+....|.|.....+.....++++.+...+...++...|
T Consensus 292 ~~~ail~Y~g~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 370 (552)
T PLN02354 292 TTTGIIRYEGGKGPASPELPEAPV-GWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASKVDGKLRY 370 (552)
T ss_pred cEEEEEEECCCCCCCCCCCCCCCc-ccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccccCCceEEE
Confidence 789999999865432222332221 1111222333333344443323333221111112345555554322123456789
Q ss_pred EEcCccccCCCCchhcccccCC-CcccccCC-CCCCCC-CCCCcceeEEEeecCCcEEEEEEEcCCCCCCceeecCCCeE
Q 015447 234 AVNGISYVNSDTPLKLADYFNI-PGIFSVNS-IQSVPS-GGASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFW 310 (406)
Q Consensus 234 ~iNg~~~~~~~~P~l~~~~~~~-~~~~~~~~-~~~~p~-~~~~~~~~~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~ 310 (406)
+|||.+|..|++|+|.+.++++ .|.++.+. ....|. ....+.+++++.++.|++|||+|+|.+...||||||||+||
T Consensus 371 ~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~ 450 (552)
T PLN02354 371 ALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFVEIIFENHEKSMQSWHLDGYSFF 450 (552)
T ss_pred EECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEEEEEEeCCCCCCCCCcCCCccEE
Confidence 9999999999999987765433 35444321 111121 11234456889999999999999999888999999999999
Q ss_pred EEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceeeEEeeeehhhhhcccEEEEEEecccccccccCC
Q 015447 311 VVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSLANEYD 390 (406)
Q Consensus 311 vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W~~HCHi~~H~~~GM~~~~~v~~~~~~~~~~~~ 390 (406)
||++|.|.|+++....+|+.||++|||+.||++||++|||+|||||+|+|||||..|+++||+++++|.++.+.+++..+
T Consensus 451 Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~ 530 (552)
T PLN02354 451 AVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYN 530 (552)
T ss_pred EEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCC
Confidence 99999999987655678999999999999999999999999999999999999999999999999999987776654567
Q ss_pred CCCCcccccccCCCC
Q 015447 391 IPSNILVCGKAVGHH 405 (406)
Q Consensus 391 ~P~~~~~c~~~~~~~ 405 (406)
+|++.+.|+..++.+
T Consensus 531 ~P~~~~~C~~~~~~~ 545 (552)
T PLN02354 531 MPENALLCGKVKGLP 545 (552)
T ss_pred CCccccccccccCCC
Confidence 999999999887653
No 4
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.2e-81 Score=637.93 Aligned_cols=403 Identities=55% Similarity=1.025 Sum_probs=313.0
Q ss_pred CceecceeEEEEEeCCCCCCCCCCCCCCeeEEEEeeeecCcHHHHHHHhcCCCCCC-CCceEEEcCCCCc---eEEEecC
Q 015447 1 MHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTLDSGKSLP-FPDGVLINGQGHT---TFNGDQG 76 (406)
Q Consensus 1 ~Q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~-~~d~~liNG~~~~---~~~v~~G 76 (406)
.|+++||+|+|||+++++.+.||+.+|+|++|+|+||+|.+...+...+..+...+ ++|++||||++.. .+.|++|
T Consensus 121 ~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~~~~g~~~~~~~d~~liNG~~~~~~~~~~v~~G 200 (536)
T PLN02792 121 VQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKKILDGGRKLPLMPDGVMINGQGVSYVYSITVDKG 200 (536)
T ss_pred hhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHHHhhccCcCCCCCCEEEEeccCCCCcceEEECCC
Confidence 48999999999999876555677778999999999999998766655555554434 8999999999853 4999999
Q ss_pred CEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEEecccCCCcceE
Q 015447 77 KTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVLTAT 156 (406)
Q Consensus 77 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~~~~~~~~~~~~ 156 (406)
|+|||||||+|..+.+.|+|+||+|+|||+||++++|..++.|.|++||||||+|++++++|+|||++...+.+......
T Consensus 201 k~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~~~~~~~ 280 (536)
T PLN02792 201 KTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIAAKVLVS 280 (536)
T ss_pred CEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCceEEEEEEcCCCCceEEEEEEeccCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999889999999875443345788
Q ss_pred EEEEeeCCCCCCCCCCCCCC-CCchhhhhhhhhhcccccccCCCCCCCCCCCccCcccceEEEEEeccccccCCeEeEEE
Q 015447 157 AILHYTNSHSPASGPLPTGP-TYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYAV 235 (406)
Q Consensus 157 ail~y~~~~~~~~~~~p~~p-~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 235 (406)
|||+|.++..... ..|..| ..+..++......++..+.+..+.+.|+....+....+++++.+........+...|+|
T Consensus 281 ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 359 (536)
T PLN02792 281 STLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAALVKRKQRYAI 359 (536)
T ss_pred EEEEECCCCCCCC-CCCCCCCcCCccccccchhhhhhccCCCCCCCCCCcccccceeccceeEEecccccccCceeEEEE
Confidence 9999998643211 122222 12233322222223333443223344443222222334455544432222345678999
Q ss_pred cCccccCCCCchhcccccCCCcccccCCCCCCCC-CCCCcceeEEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEee
Q 015447 236 NGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPS-GGASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGY 314 (406)
Q Consensus 236 Ng~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~ 314 (406)
||.+|..|++|+|.+.++++.|.++.+.....|. .......+.++.++.|++|||+|+|.+...||||||||+||||++
T Consensus 360 N~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~ 439 (536)
T PLN02792 360 NGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGI 439 (536)
T ss_pred CCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEEEECCCCCCCCeeeCCCceEEEee
Confidence 9999999999999877766667665432212222 112233578899999999999999988889999999999999999
Q ss_pred ccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceeeEEeeeehhhhhcccEEEEEEecccccccccCCCCCC
Q 015447 315 GSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSLANEYDIPSN 394 (406)
Q Consensus 315 g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W~~HCHi~~H~~~GM~~~~~v~~~~~~~~~~~~~P~~ 394 (406)
|.|.|++..+..+|+.||++||||.||++||++|||+|||||+|+||||+..|+.+||+++|.|.++.+...+..++|++
T Consensus 440 G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~ 519 (536)
T PLN02792 440 NKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKN 519 (536)
T ss_pred cCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcc
Confidence 99999876666799999999999999999999999999999999999999999999999999998776655446789999
Q ss_pred cccccccCCC
Q 015447 395 ILVCGKAVGH 404 (406)
Q Consensus 395 ~~~c~~~~~~ 404 (406)
++.||..++.
T Consensus 520 ~~~Cg~~~~~ 529 (536)
T PLN02792 520 ALLCGRASNK 529 (536)
T ss_pred cCccccccCC
Confidence 9999977664
No 5
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=1.5e-80 Score=632.35 Aligned_cols=404 Identities=50% Similarity=0.876 Sum_probs=309.9
Q ss_pred CceecceeEEEEEeCCCCCCCCCCCCC-CeeEEEEeeeecCcHHHHHHHhcCCCCCCCCceEEEcCCCC-----------
Q 015447 1 MHRAAGGYGGINIYQRPRIPIPYPIQD-GDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQGH----------- 68 (406)
Q Consensus 1 ~Q~~~Gl~G~lIV~~~~~~~~p~~~~d-~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~----------- 68 (406)
.|+++||+|+|||+++++.+.||..++ +|.+|+|+||+|.+..++...+..|....++|++||||++.
T Consensus 134 ~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~ 213 (596)
T PLN00044 134 LHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRALRRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPG 213 (596)
T ss_pred hhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHHHHHHhcCCCCCCCCceEEcccCccccCCccccCC
Confidence 489999999999999877667775444 79999999999998777665666665556889999999863
Q ss_pred ---ceEEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCc-eeEEEE
Q 015447 69 ---TTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPK-DYYIVA 144 (406)
Q Consensus 69 ---~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g-~y~ir~ 144 (406)
+.+.|++||+|||||||++..+.+.|+||||+|+|||+||.+++|+.++.|.|++||||||+|+++|+++ +||||+
T Consensus 214 ~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a 293 (596)
T PLN00044 214 ITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVA 293 (596)
T ss_pred CccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEE
Confidence 1389999999999999999999999999999999999999999999999999999999999999999764 899998
Q ss_pred Eecc--cC--CCcceEEEEEeeCCCCCCCCCCCCCC--CCchhhhhhhhhhcccccccCCCCCCCCCCCccCcccceEEE
Q 015447 145 STRF--TK--NVLTATAILHYTNSHSPASGPLPTGP--TYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTI 218 (406)
Q Consensus 145 ~~~~--~~--~~~~~~ail~y~~~~~~~~~~~p~~p--~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~ 218 (406)
...+ +. +...+.|||+|.++..+.+.++|..| .++..++..+...++.++.+....+.|..+..+....+.+.+
T Consensus 294 ~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 373 (596)
T PLN00044 294 SARFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVY 373 (596)
T ss_pred ecccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeee
Confidence 7532 21 44578899999986532222234433 223333332333443333322223333322111111122222
Q ss_pred EEecc-ccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEEEcCCC
Q 015447 219 VLANS-APLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEK 297 (406)
Q Consensus 219 ~~~~~-~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~N~~~ 297 (406)
.+... .....|+..|+|||.+|..|++|+|.+.+++..|+|+.+.+...|. ......+.++.++.|++|||+|+|...
T Consensus 374 ~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~-~~~~~~t~v~~~~~n~~VeiV~qn~~~ 452 (596)
T PLN00044 374 LLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMN-RLPKLDTSIINGTYKGFMEIIFQNNAT 452 (596)
T ss_pred eeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCc-cccccCceEEEcCCCCEEEEEEeCCCC
Confidence 12110 0011357899999999999999999877777777776554333232 222336788999999999999999877
Q ss_pred CCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceeeEEeeeehhhhhcccEEEEE
Q 015447 298 TMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLK 377 (406)
Q Consensus 298 ~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W~~HCHi~~H~~~GM~~~~~ 377 (406)
..||||||||+||||++|.|.|++.++..+|+.||++|||+.||++||++|||+|||||+|+|||||+.|++.||+++|.
T Consensus 453 ~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~ 532 (596)
T PLN00044 453 NVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYIN 532 (596)
T ss_pred CCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEE
Confidence 89999999999999999999999877678999999999999999999999999999999999999999999999999999
Q ss_pred Eeccccc-ccccCCCCCCcccccccCCCC
Q 015447 378 VWNAVHS-LANEYDIPSNILVCGKAVGHH 405 (406)
Q Consensus 378 v~~~~~~-~~~~~~~P~~~~~c~~~~~~~ 405 (406)
|.++.+. ..+..++|++++.||..++.+
T Consensus 533 v~~~~~~~~~~~~~pP~~~~~Cg~~~~~~ 561 (596)
T PLN00044 533 VVNPEDNSNKTVLPIPDNAIFCGALSSLQ 561 (596)
T ss_pred EecCCCCccccccCCCcccCcccccccCC
Confidence 9876543 334678999999998776643
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=2.6e-80 Score=628.34 Aligned_cols=400 Identities=49% Similarity=0.889 Sum_probs=299.5
Q ss_pred CceecceeEEEEEeCCCCCCCCCCCCCCeeEEEEeeeecCcHHHHHHHhcCCCCCCCCceEEEcCCC--CceEEEecCCE
Q 015447 1 MHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQG--HTTFNGDQGKT 78 (406)
Q Consensus 1 ~Q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~--~~~~~v~~G~~ 78 (406)
.|+++||+|+|||+++++.+.||..+|+|++|+|+||++.+...+...+..+...+++|++||||++ .+.+.|++||+
T Consensus 131 ~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~~~~v~~G~~ 210 (545)
T PLN02168 131 LQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASLDNGHSLPNPDGILFNGRGPEETFFAFEPGKT 210 (545)
T ss_pred hhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhhhcCCCCCCCCEEEEeccCCCcceEEeCCCCE
Confidence 4999999999999998876667777899999999999998766554444444445689999999997 34599999999
Q ss_pred EEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCC----ceeEEEEEecccCCCcc
Q 015447 79 YMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKNVLT 154 (406)
Q Consensus 79 ~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~----g~y~ir~~~~~~~~~~~ 154 (406)
|||||||+++.+.+.|+||||+|+|||+||.+++|+.++.|.|++||||||+|+++++. ++||||+....+.....
T Consensus 211 yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~~~~ 290 (545)
T PLN02168 211 YRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDAYLG 290 (545)
T ss_pred EEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999998643 48999998765545567
Q ss_pred eEEEEEeeCCCCCCCCCCCCCCC-CchhhhhhhhhhcccccccCCCCCCCCCCCccCcccceEEEEEeccccccCCeEeE
Q 015447 155 ATAILHYTNSHSPASGPLPTGPT-YEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRY 233 (406)
Q Consensus 155 ~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (406)
..|||+|.++....+.++|..|. .+...+.+...++...+.+..+.+.|..++.+....+++++.+.......++...|
T Consensus 291 ~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 370 (545)
T PLN02168 291 GVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDVMLSSGKLRY 370 (545)
T ss_pred eEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccccccCceEEE
Confidence 89999998764322223333232 12211111111222234332223333322211122344555444321113457899
Q ss_pred EEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEe
Q 015447 234 AVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVG 313 (406)
Q Consensus 234 ~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~ 313 (406)
+|||.+|..|++|+|.+.++++.+.+..+.....|.+......++++.++.|++|+|+|+|.....||||||||+||||+
T Consensus 371 ~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg 450 (545)
T PLN02168 371 TINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYHIVFQNPLFSLESYHIDGYNFFVVG 450 (545)
T ss_pred EECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEEEEEeCCCCCCCCeeeCCCceEEEE
Confidence 99999999999999876555433333222111112111122346788999999999999999888999999999999999
Q ss_pred eccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceeeEEeeeehhhhhcccEEEEEEe-----ccccc-ccc
Q 015447 314 YGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVW-----NAVHS-LAN 387 (406)
Q Consensus 314 ~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W~~HCHi~~H~~~GM~~~~~v~-----~~~~~-~~~ 387 (406)
+|.|.|++.....+|+.||++|||+.||++||++|||+|||||+|+|||||..||+.||+++++|. +|++. ...
T Consensus 451 ~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~ 530 (545)
T PLN02168 451 YGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRD 530 (545)
T ss_pred CCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCcccccccc
Confidence 999999876656789999999999999999999999999999999999999999999999999985 22222 112
Q ss_pred cCCCCCCcccccc
Q 015447 388 EYDIPSNILVCGK 400 (406)
Q Consensus 388 ~~~~P~~~~~c~~ 400 (406)
..++|+++++||.
T Consensus 531 ~~~~P~~~~~cg~ 543 (545)
T PLN02168 531 ENPIPGNVIRCGK 543 (545)
T ss_pred ccCCChhhccccc
Confidence 3679999999984
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-75 Score=590.62 Aligned_cols=405 Identities=45% Similarity=0.756 Sum_probs=335.4
Q ss_pred CceecceeEEEEEeCCCCCCCCCCCCCCeeEEEEeeeecC-cHHHHHHHhcCCCCCC-CCceEEEcCCCC------ceEE
Q 015447 1 MHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKT-NHKILRQTLDSGKSLP-FPDGVLINGQGH------TTFN 72 (406)
Q Consensus 1 ~Q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~-~~~~~~~~~~~g~~~~-~~d~~liNG~~~------~~~~ 72 (406)
+|+++|++|+|||.++...+.||+.+|+|++|+|+||+++ +...+...+..+...+ .+|.++|||++. ..+.
T Consensus 133 ~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~~~~l~ 212 (563)
T KOG1263|consen 133 WQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNCTPTLT 212 (563)
T ss_pred cccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCceeEEE
Confidence 5899999999999999987788988999999999999995 7777776665555444 499999999983 2489
Q ss_pred EecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEEecccCC-
Q 015447 73 GDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKN- 151 (406)
Q Consensus 73 v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~~~~~~~- 151 (406)
|++||+|||||||+|.+..+.|+|+||+|+||++||.+++|..+++|.|.|||||||+|+++|.+++|+|++...+...
T Consensus 213 v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~ 292 (563)
T KOG1263|consen 213 VEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASN 292 (563)
T ss_pred EcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998889999998876543
Q ss_pred ---CcceEEEEEeeCCCCCCCCCCC---C-CCCCchhhhhhhhhhcccccccCCCCCCCCCCCccCcccceEEEEEeccc
Q 015447 152 ---VLTATAILHYTNSHSPASGPLP---T-GPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSA 224 (406)
Q Consensus 152 ---~~~~~ail~y~~~~~~~~~~~p---~-~p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~ 224 (406)
...+.|+|+|.++..+.+...| . +|..+..++..+.+.++..+....+.|.|+++.+.....+.+.+.+....
T Consensus 293 ~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~ 372 (563)
T KOG1263|consen 293 VPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSD 372 (563)
T ss_pred cceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCC
Confidence 5678999999985544333322 1 23345566777777777777777777888876554444455555555432
Q ss_pred cccCCeEeEEEcCccccCCCCchhcccccCC-CcccccCCCCCCCC--C-CCCcceeEEEeecCCcEEEEEEEcCCC---
Q 015447 225 PLINGKLRYAVNGISYVNSDTPLKLADYFNI-PGIFSVNSIQSVPS--G-GASSVATSVMQVNLHEYIEVVFQNNEK--- 297 (406)
Q Consensus 225 ~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~-~~~~~~~~~~~~p~--~-~~~~~~~~~~~v~~g~~v~ivl~N~~~--- 297 (406)
...+++.+++||+.+|..|++|++.+.++.. .+.++.+.+...+. . .+.+.+++++.++.++.|||||+|.+.
T Consensus 373 ~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~ 452 (563)
T KOG1263|consen 373 NKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQ 452 (563)
T ss_pred CCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccC
Confidence 2346789999999999999999887776643 45555444332222 1 124778999999999999999999874
Q ss_pred CCCceeecCCCeEEEeeccCCCCc--cccccCCCCCCCccceEEeCCCCEEEEEEEecCceeeEEeeeehhhhhcccEEE
Q 015447 298 TMQSWHLDGYDFWVVGYGSGQWAA--EKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFY 375 (406)
Q Consensus 298 ~~HP~HlHG~~F~vl~~g~G~~~~--~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W~~HCHi~~H~~~GM~~~ 375 (406)
..||||||||+|||++.|.|.|++ +....+|+.+|+.||||.||||||++|||.|||||+|+||||+.+|+..||+++
T Consensus 453 ~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~ 532 (563)
T KOG1263|consen 453 ENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETV 532 (563)
T ss_pred CCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEE
Confidence 579999999999999999999998 444678999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccccCCCCCCcccccccCCCC
Q 015447 376 LKVWNAVHSLANEYDIPSNILVCGKAVGHH 405 (406)
Q Consensus 376 ~~v~~~~~~~~~~~~~P~~~~~c~~~~~~~ 405 (406)
|.|.++++..+++.++|.+.+.||..++.+
T Consensus 533 f~V~~~~~~~~~~~~~P~~~~~cg~~~~~~ 562 (563)
T KOG1263|consen 533 FIVGNGEESLSSEYPPPKNLPKCGRASGIP 562 (563)
T ss_pred EEEeCCCccCCcCCCCCCCcccccccCCcC
Confidence 999988887766789999999999988764
No 8
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=7.9e-74 Score=586.91 Aligned_cols=387 Identities=27% Similarity=0.458 Sum_probs=280.0
Q ss_pred ecceeEEEEEeCCCCCCCCCCCCCCeeEEEEeeeecCcHHHHH-HHhcCCCCCCCCceEEEcCCCCc----------eEE
Q 015447 4 AAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILR-QTLDSGKSLPFPDGVLINGQGHT----------TFN 72 (406)
Q Consensus 4 ~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~-~~~~~g~~~~~~d~~liNG~~~~----------~~~ 72 (406)
.+||+|+|||+++.+.+.||+.+|+|++|+|+||++.+..++. .....+..+.++|++|||||... .+.
T Consensus 111 ~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~i~ 190 (539)
T TIGR03389 111 RATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTGGAPNVSDAYTINGHPGPLYNCSSKDTFKLT 190 (539)
T ss_pred hccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcCCCCCccceEEECCCcCCCCCCCCCCceEEE
Confidence 4699999999998876667777899999999999999776643 33444555568899999999631 499
Q ss_pred EecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEEecccC--
Q 015447 73 GDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTK-- 150 (406)
Q Consensus 73 v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~~~~~~-- 150 (406)
|++||+|||||||+|+.+.+.|+||||+|+|||+||.+++|++++.+.|++||||||+|++++++|+||||+....+.
T Consensus 191 v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~~~~~~~ 270 (539)
T TIGR03389 191 VEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARPYMDAPG 270 (539)
T ss_pred ECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEecCCCEEEEEEECCCCCceEEEEEeccccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999998889999999764221
Q ss_pred --CCcceEEEEEeeCCCCCCCCCCCCCCC-CchhhhhhhhhhcccccccCCCCCCCCCCCccCcccceEEEEEecccc--
Q 015447 151 --NVLTATAILHYTNSHSPASGPLPTGPT-YEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAP-- 225 (406)
Q Consensus 151 --~~~~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~-- 225 (406)
......|||+|.++.....+..+..|. .+..........+.....+..+...|. .+++++.+.....
T Consensus 271 ~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~--------~~~~~~~~~~~~~~~ 342 (539)
T TIGR03389 271 AFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANVPV--------TIDRRLFFTIGLGLD 342 (539)
T ss_pred CCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCCCC--------CCCeEEEEEeecccc
Confidence 234689999998864321111111111 111100110001110000100111111 2233332222110
Q ss_pred --------c-cCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCC-----------CCCCcceeEEEeecCC
Q 015447 226 --------L-INGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPS-----------GGASSVATSVMQVNLH 285 (406)
Q Consensus 226 --------~-~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~-----------~~~~~~~~~~~~v~~g 285 (406)
. ....+.|+|||++|..|+.|+|...+.++.+.+..+.....|. +-..+.+++++.++.|
T Consensus 343 ~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 422 (539)
T TIGR03389 343 PCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFN 422 (539)
T ss_pred cCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcccccccccCceEEEecCC
Confidence 0 1235789999999998899988655443333322111110010 0012335688999999
Q ss_pred cEEEEEEEcCC---CCCCceeecCCCeEEEeeccCCCCccc-cccCCCCCCCccceEEeCCCCEEEEEEEecCceeeEEe
Q 015447 286 EYIEVVFQNNE---KTMQSWHLDGYDFWVVGYGSGQWAAEK-RRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMR 361 (406)
Q Consensus 286 ~~v~ivl~N~~---~~~HP~HlHG~~F~vl~~g~G~~~~~~-~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W~~H 361 (406)
++|||+|+|.+ ...||||||||+||||++|.|.|+... ...+|+.||++|||+.||++||++|||+|||||+|+||
T Consensus 423 ~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~H 502 (539)
T TIGR03389 423 STVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMH 502 (539)
T ss_pred CEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEE
Confidence 99999999985 348999999999999999999997542 23689999999999999999999999999999999999
Q ss_pred eeehhhhhcccEEEEEEecccccccccCCCCCCcccc
Q 015447 362 SAIWERQYLGQQFYLKVWNAVHSLANEYDIPSNILVC 398 (406)
Q Consensus 362 CHi~~H~~~GM~~~~~v~~~~~~~~~~~~~P~~~~~c 398 (406)
|||++|+.+||+++|.+....+...+.+++|++++.|
T Consensus 503 CHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 503 CHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred ecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 9999999999999998865433222358899999999
No 9
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=2.9e-73 Score=582.40 Aligned_cols=382 Identities=28% Similarity=0.539 Sum_probs=277.5
Q ss_pred CceecceeEEEEEeCCCCCCCCCCCCCCeeEEEEeeeecCcHHHHHHHhcC--CCCCCCCceEEEcCCCC----------
Q 015447 1 MHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTLDS--GKSLPFPDGVLINGQGH---------- 68 (406)
Q Consensus 1 ~Q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~--g~~~~~~d~~liNG~~~---------- 68 (406)
.|+++||+|+|||+++.++..|+ .+|+|++|+|+||+|+...+....+.. .....+++++||||+++
T Consensus 107 ~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~ 185 (541)
T TIGR03388 107 MQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGRGQFNCSLAAKFS 185 (541)
T ss_pred HHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCCCcCCCCCcceEECCCCCCCCccccccC
Confidence 48999999999999987655677 579999999999999976543322221 11225789999999852
Q ss_pred ----------------ce-EEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEE
Q 015447 69 ----------------TT-FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLV 131 (406)
Q Consensus 69 ----------------~~-~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v 131 (406)
+. +.|++|++|||||||+|+.+.+.|+||||+|+|||+||.+++|++++.|.|++||||||+|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~dvlv 265 (541)
T TIGR03388 186 STNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETYSVLL 265 (541)
T ss_pred ccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEEEEEE
Confidence 12 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCC-ceeEEEEEeccc-CCCcceEEEEEeeCCCCCCC--CCCCCCCC-CchhhhhhhhhhcccccccCCCCCCCCCC
Q 015447 132 TLNQPP-KDYYIVASTRFT-KNVLTATAILHYTNSHSPAS--GPLPTGPT-YEIHWSMKQARTFRWNLTANAARPNPQGS 206 (406)
Q Consensus 132 ~~~~~~-g~y~ir~~~~~~-~~~~~~~ail~y~~~~~~~~--~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~p~p~~~ 206 (406)
++++++ ++||||+..... .......|||+|.+...... .+.|..|. .+.... ......+......+.|.
T Consensus 266 ~~~~~~~~~y~ira~~~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~-- 339 (541)
T TIGR03388 266 TTDQDPSRNYWISVGVRGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRS----KAFSLAIKAAMGSPKPP-- 339 (541)
T ss_pred eCCCCCCCcEEEEEecccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchh----hccchhhhccccCCCCC--
Confidence 998865 589999876433 22346789999987543211 11111121 111000 00000010000011111
Q ss_pred CccCcccceEEEEEeccccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCC----------CCCCCCCCcce
Q 015447 207 FHYGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQ----------SVPSGGASSVA 276 (406)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~----------~~p~~~~~~~~ 276 (406)
...++++.+.......++..+|++|+.+|..|..|+|...+.+..++|+.+... ..+.....+.+
T Consensus 340 -----~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (541)
T TIGR03388 340 -----ETSDRRIVLLNTQNKINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTG 414 (541)
T ss_pred -----CCCCcEEEEeccCcccCceEEEEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccC
Confidence 123445443322111245678999999998888898876554333333221100 00111233456
Q ss_pred eEEEeecCCcEEEEEEEcCC------CCCCceeecCCCeEEEeeccCCCCcc-ccccCCCCCCCccceEEeCCCCEEEEE
Q 015447 277 TSVMQVNLHEYIEVVFQNNE------KTMQSWHLDGYDFWVVGYGSGQWAAE-KRRTYNLADTLTRHTAQVYPQSWTVIL 349 (406)
Q Consensus 277 ~~~~~v~~g~~v~ivl~N~~------~~~HP~HlHG~~F~vl~~g~G~~~~~-~~~~~n~~~p~~rDTv~vp~~g~~~ir 349 (406)
++++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+.+ ....+|+.||++|||+.||++||++||
T Consensus 415 ~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIR 494 (541)
T TIGR03388 415 NGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALR 494 (541)
T ss_pred ceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEE
Confidence 78899999999999999974 35799999999999999999999754 234689999999999999999999999
Q ss_pred EEecCceeeEEeeeehhhhhcccEEEEEEecccccccccCCCCCCccccc
Q 015447 350 VSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSLANEYDIPSNILVCG 399 (406)
Q Consensus 350 f~adnpG~W~~HCHi~~H~~~GM~~~~~v~~~~~~~~~~~~~P~~~~~c~ 399 (406)
|+|||||.|+|||||++|+.+||+++|... +++ + .++|++++.|+
T Consensus 495 F~adNPG~W~~HCHi~~H~~~GM~~~~~e~-~~~-~---~~~P~~~~~C~ 539 (541)
T TIGR03388 495 FVADNPGVWAFHCHIEPHLHMGMGVVFAEG-VEK-V---GKLPKEALGCG 539 (541)
T ss_pred EECCCCeEeeeeccchhhhhcccEEEEecc-ccc-c---CCCCccccCCC
Confidence 999999999999999999999999999654 333 3 56899999997
No 10
>PLN02604 oxidoreductase
Probab=100.00 E-value=6.8e-73 Score=581.37 Aligned_cols=387 Identities=28% Similarity=0.526 Sum_probs=281.5
Q ss_pred CceecceeEEEEEeCCCCCCCCCCCCCCeeEEEEeeeecCcHHHHHHHhcCC--CCCCCCceEEEcCCCC----------
Q 015447 1 MHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTLDSG--KSLPFPDGVLINGQGH---------- 68 (406)
Q Consensus 1 ~Q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g--~~~~~~d~~liNG~~~---------- 68 (406)
.|+.+||+|+|||+++.+++.|+ .+|+|++|+|+||+|++..+....+... ....+++++||||+++
T Consensus 130 ~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~ 208 (566)
T PLN02604 130 MQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPY 208 (566)
T ss_pred HHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccCcc
Confidence 48899999999999987655677 5789999999999999775543222211 1224789999999852
Q ss_pred --------------c-eEEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEe
Q 015447 69 --------------T-TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTL 133 (406)
Q Consensus 69 --------------~-~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~ 133 (406)
+ .+.|++|++|||||||+|+.+.+.|+||||+|+|||+||.+++|++++.|.|++||||||+|++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~ 288 (566)
T PLN02604 209 LKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKA 288 (566)
T ss_pred ccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEEC
Confidence 1 2789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-ceeEEEEEeccc-CCCcceEEEEEeeCCCCCCCCC--CCCCCC-CchhhhhhhhhhcccccccCCCCCCCCCCCc
Q 015447 134 NQPP-KDYYIVASTRFT-KNVLTATAILHYTNSHSPASGP--LPTGPT-YEIHWSMKQARTFRWNLTANAARPNPQGSFH 208 (406)
Q Consensus 134 ~~~~-g~y~ir~~~~~~-~~~~~~~ail~y~~~~~~~~~~--~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~ 208 (406)
++++ ++||||+..... .+...++|||+|.+.......+ .+..+. .+.....++...+.. +... ..+ +
T Consensus 289 ~~~~~~~y~ira~~~~~~~~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~-~----- 360 (566)
T PLN02604 289 DQDPSRNYWVTTSVVSRNNTTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKA-RHGY-IHP-P----- 360 (566)
T ss_pred CCCCCCCEEEEEecccCCCCCcceeEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccc-cccC-cCC-C-----
Confidence 9865 489999865432 2345789999998643211111 011111 011001110000100 0000 000 0
Q ss_pred cCcccceEEEEEeccccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCC-CC----------CCCCCccee
Q 015447 209 YGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQS-VP----------SGGASSVAT 277 (406)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~-~p----------~~~~~~~~~ 277 (406)
....++++.+.......++...|+||+.+|..|+.|+|...+....+.|+.+.... .+ .....+.+.
T Consensus 361 --~~~~d~~~~~~~~~~~~~~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (566)
T PLN02604 361 --PLTSDRVIVLLNTQNEVNGYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSD 438 (566)
T ss_pred --CCCCCeEEEEeccccccCCeEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCc
Confidence 11235555543322223456899999999988888988765544445554221100 00 011223356
Q ss_pred EEEeecCCcEEEEEEEcCC------CCCCceeecCCCeEEEeeccCCCCccc-cccCCCCCCCccceEEeCCCCEEEEEE
Q 015447 278 SVMQVNLHEYIEVVFQNNE------KTMQSWHLDGYDFWVVGYGSGQWAAEK-RRTYNLADTLTRHTAQVYPQSWTVILV 350 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~------~~~HP~HlHG~~F~vl~~g~G~~~~~~-~~~~n~~~p~~rDTv~vp~~g~~~irf 350 (406)
.++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|++.. ...+|+.||++|||+.||++||++|||
T Consensus 439 ~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF 518 (566)
T PLN02604 439 SIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRF 518 (566)
T ss_pred eEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEE
Confidence 7899999999999999985 357999999999999999999997643 346899999999999999999999999
Q ss_pred EecCceeeEEeeeehhhhhcccEEEEEEecccccccccCCCCCCcccccccCC
Q 015447 351 SLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSLANEYDIPSNILVCGKAVG 403 (406)
Q Consensus 351 ~adnpG~W~~HCHi~~H~~~GM~~~~~v~~~~~~~~~~~~~P~~~~~c~~~~~ 403 (406)
+|||||.|+|||||++|+..||+++|... +++ ..++|++++.|+.-+|
T Consensus 519 ~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-~~~----~~~~p~~~~~C~~~~~ 566 (566)
T PLN02604 519 RADNPGVWAFHCHIESHFFMGMGVVFEEG-IER----VGKLPSSIMGCGESKG 566 (566)
T ss_pred ECCCCeEeeEeecchhHhhcCCEEEEeeC-hhh----ccCCCCCcCccccCCC
Confidence 99999999999999999999999999654 333 3678999999987654
No 11
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=7.4e-73 Score=580.01 Aligned_cols=386 Identities=29% Similarity=0.504 Sum_probs=275.7
Q ss_pred CceecceeEEEEEeCCCCCCCCCCCCCCeeEEEEeeeecCcHHHHHHHhcC--CCCCCCCceEEEcCCCC----------
Q 015447 1 MHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTLDS--GKSLPFPDGVLINGQGH---------- 68 (406)
Q Consensus 1 ~Q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~--g~~~~~~d~~liNG~~~---------- 68 (406)
.|+++||+|+|||+++.+...++ .+|+|++|+|+||+|.+.......+.. .....++|++||||+++
T Consensus 129 ~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~ 207 (574)
T PLN02191 129 MQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFS 207 (574)
T ss_pred HHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCCCCCccccccc
Confidence 48999999999999765533444 579999999999999864432211211 11235789999999862
Q ss_pred -----------------c-eEEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEE
Q 015447 69 -----------------T-TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVL 130 (406)
Q Consensus 69 -----------------~-~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~ 130 (406)
+ .+.|++||+|||||||+|+.+.+.|+||||+|+|||+||++++|++++.|.|++||||||+
T Consensus 208 ~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVl 287 (574)
T PLN02191 208 NGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVL 287 (574)
T ss_pred CCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEE
Confidence 1 2889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCC-ceeEEEEEecccC-CCcceEEEEEeeCCCCCCCC--CCCCCCC-CchhhhhhhhhhcccccccCCCCCCCCC
Q 015447 131 VTLNQPP-KDYYIVASTRFTK-NVLTATAILHYTNSHSPASG--PLPTGPT-YEIHWSMKQARTFRWNLTANAARPNPQG 205 (406)
Q Consensus 131 v~~~~~~-g~y~ir~~~~~~~-~~~~~~ail~y~~~~~~~~~--~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~p~p~~ 205 (406)
|++++++ ++||||+...... ......|||+|.+......+ +.|..|. .+... .......+......+.+.
T Consensus 288 V~a~~~~~~~y~ira~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~~~----~~~~~~~~~~~~~~~~~p- 362 (574)
T PLN02191 288 LTTDQDPSQNYYISVGVRGRKPNTTQALTILNYVTAPASKLPSSPPPVTPRWDDFER----SKNFSKKIFSAMGSPSPP- 362 (574)
T ss_pred EECCCCCCCCEEEEEEccccCCCCCCceEEEEECCCCCCCCCCCCCCCCCcccccch----hhcccccccccccCCCCC-
Confidence 9999865 5899999764321 12245799999876532111 1111111 11110 001111111100001111
Q ss_pred CCccCcccceEEEEEeccccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCC-CCCC---------CCCcc
Q 015447 206 SFHYGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQS-VPSG---------GASSV 275 (406)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~-~p~~---------~~~~~ 275 (406)
....++++.+... ....+..+|++||.+|..|+.|+|.+.+.+..+.|..+.+.. .+.. ...+.
T Consensus 363 -----~~~~~~~~~~~~~-~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (574)
T PLN02191 363 -----KKYRKRLILLNTQ-NLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTT 436 (574)
T ss_pred -----CcccceEEEeccc-ceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccc
Confidence 0112444444321 112356689999999998899988776544444333221100 0000 01234
Q ss_pred eeEEEeecCCcEEEEEEEcCC------CCCCceeecCCCeEEEeeccCCCCccc-cccCCCCCCCccceEEeCCCCEEEE
Q 015447 276 ATSVMQVNLHEYIEVVFQNNE------KTMQSWHLDGYDFWVVGYGSGQWAAEK-RRTYNLADTLTRHTAQVYPQSWTVI 348 (406)
Q Consensus 276 ~~~~~~v~~g~~v~ivl~N~~------~~~HP~HlHG~~F~vl~~g~G~~~~~~-~~~~n~~~p~~rDTv~vp~~g~~~i 348 (406)
+.+++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+++. ...+|+.||++|||+.||++||++|
T Consensus 437 ~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vI 516 (574)
T PLN02191 437 GNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAI 516 (574)
T ss_pred cceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEE
Confidence 567899999999999999985 578999999999999999999998632 2368999999999999999999999
Q ss_pred EEEecCceeeEEeeeehhhhhcccEEEEEEecccccccccCCCCCCcccccccCC
Q 015447 349 LVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSLANEYDIPSNILVCGKAVG 403 (406)
Q Consensus 349 rf~adnpG~W~~HCHi~~H~~~GM~~~~~v~~~~~~~~~~~~~P~~~~~c~~~~~ 403 (406)
||+|||||+|+|||||++|+.+||+++|. ..+ +.+ +++|++++.|+.+.+
T Consensus 517 Rf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~-e~~-~~~---~~~p~~~~~C~~~~~ 566 (574)
T PLN02191 517 RFVTDNPGVWFFHCHIEPHLHMGMGVVFA-EGL-NRI---GKIPDEALGCGLTKQ 566 (574)
T ss_pred EEECCCCEEEEEecCchhhhhcCCEEEEe-cCh-hhc---cCCCcchhhhhcccc
Confidence 99999999999999999999999999984 333 333 458999999997754
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=2.1e-69 Score=552.55 Aligned_cols=371 Identities=23% Similarity=0.356 Sum_probs=268.1
Q ss_pred CceecceeEEEEEeCCCCCCCCCCCCCCeeEEEEeeeecCcHHHHHHHhcCC--CCCCCCceEEEcCCCC----------
Q 015447 1 MHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTLDSG--KSLPFPDGVLINGQGH---------- 68 (406)
Q Consensus 1 ~Q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g--~~~~~~d~~liNG~~~---------- 68 (406)
+|+. ||+|+|||++++. .|| .+|+|++|+|+||+++..+++...+..+ ....+++++|||||+.
T Consensus 116 ~Q~~-~l~G~lIV~~~~~--~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~ 191 (538)
T TIGR03390 116 FQAV-TAFGPLIVEDCEP--PPY-KYDDERILLVSDFFSATDEEIEQGLLSTPFTWSGETEAVLLNGKSGNKSFYAQINP 191 (538)
T ss_pred hhhh-cceeEEEEccCCc--cCC-CccCcEEEEEeCCCCCCHHHHHhhhhccCCccCCCCceEEECCccccccccccccC
Confidence 3766 5999999999764 355 5689999999999999877664433222 1235679999999962
Q ss_pred ------ceEEEecCCEEEEEEEecCCCceEEEEEeCcE-EEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCC-----
Q 015447 69 ------TTFNGDQGKTYMFRISNVGLSTSFNFRIQGHT-MKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQP----- 136 (406)
Q Consensus 69 ------~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~-~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~----- 136 (406)
+.+.|++||+|||||||+|+.+.+.|+||||+ |+|||+||.+++|++++.|.|++||||||+|+++++
T Consensus 192 ~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~ 271 (538)
T TIGR03390 192 SGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAKIDHLQLGGGQRYSVLFKAKTEDELCG 271 (538)
T ss_pred CCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceEeCeEEEccCCEEEEEEECCCcccccc
Confidence 34899999999999999999999999999999 999999999999999999999999999999999875
Q ss_pred --CceeEEEEEecccCCCcceEEEEEeeCCCCCCCCCCCCCCCCchhhhhhhhhhcccccccCCCCCCCCCCCccCcccc
Q 015447 137 --PKDYYIVASTRFTKNVLTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINT 214 (406)
Q Consensus 137 --~g~y~ir~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~ 214 (406)
+++||||+.....++.....|||+|.+...+..+..|..|..........+.+ ..|.+......+.-. .....
T Consensus 272 ~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~l~pl~~~~~~~~~---~~~~~ 346 (538)
T TIGR03390 272 GDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLE--YELEPLSEENNQDFP---TLDEV 346 (538)
T ss_pred CCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhh--eeeEecCccccCCCC---CCCcC
Confidence 47999999765444445689999998654322111122111000000001111 123332111000000 01235
Q ss_pred eEEEEEeccccc--cCCeEeEEEcCccccC--CCCchhcccccCCC-cccccCCCCCCCCCCCCcceeEEEeecCCcEEE
Q 015447 215 TRTIVLANSAPL--INGKLRYAVNGISYVN--SDTPLKLADYFNIP-GIFSVNSIQSVPSGGASSVATSVMQVNLHEYIE 289 (406)
Q Consensus 215 ~~~~~~~~~~~~--~~~~~~~~iNg~~~~~--~~~P~l~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ 289 (406)
++++.+...+.. .++...|++||.+|.. +++|+|...+.+.. .....+ . .+...+....++++.++.|++||
T Consensus 347 d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~V~ 423 (538)
T TIGR03390 347 TRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYT--A-ALANYGFDPETRAFPAKVGEVLE 423 (538)
T ss_pred ceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcc--c-ccccCCcCcCceEEEcCCCCEEE
Confidence 667666654321 2467899999999985 78899876543210 000000 0 00001122245678899999999
Q ss_pred EEEEcCC--------CCCCceeecCCCeEEEeeccCCCCccc-cccCCCCCCCccceEEeC----------CCCEEEEEE
Q 015447 290 VVFQNNE--------KTMQSWHLDGYDFWVVGYGSGQWAAEK-RRTYNLADTLTRHTAQVY----------PQSWTVILV 350 (406)
Q Consensus 290 ivl~N~~--------~~~HP~HlHG~~F~vl~~g~G~~~~~~-~~~~n~~~p~~rDTv~vp----------~~g~~~irf 350 (406)
|+|+|.+ ...||||||||+||||++|.|.|++.. ...+|+.||++|||+.|| ++||++|||
T Consensus 424 ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~ 503 (538)
T TIGR03390 424 IVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRI 503 (538)
T ss_pred EEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEE
Confidence 9999974 478999999999999999999998643 235788899999999996 789999999
Q ss_pred EecCceeeEEeeeehhhhhcccEEEEEEecccc
Q 015447 351 SLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVH 383 (406)
Q Consensus 351 ~adnpG~W~~HCHi~~H~~~GM~~~~~v~~~~~ 383 (406)
++||||+|+|||||.+|+.+||+++|.|.+.++
T Consensus 504 ~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~ 536 (538)
T TIGR03390 504 RVTNPGVWMMHCHILQHMVMGMQTVWVFGDAED 536 (538)
T ss_pred EcCCCeeEEEeccchhhhhccceEEEEeCChHH
Confidence 999999999999999999999999999977654
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=2e-53 Score=434.75 Aligned_cols=323 Identities=20% Similarity=0.210 Sum_probs=225.3
Q ss_pred CceecceeEEEEEeCCCCCCCCCCCCCCeeEEEEeeeecCcHHHHHHHhc----------------------CCC-----
Q 015447 1 MHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTLD----------------------SGK----- 53 (406)
Q Consensus 1 ~Q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~----------------------~g~----- 53 (406)
+|+++||+|+|||+++++ .|+ .+|+|++|+|+||++.+.+.+.+.+. .|.
T Consensus 148 ~q~~~GL~G~lIV~~~~~--~p~-~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 224 (587)
T TIGR01480 148 FQEQAGLYGPLIIDPAEP--DPV-RADREHVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFFRDVRNDGLKQTLA 224 (587)
T ss_pred hHhhccceEEEEECCCcc--ccC-CCCceEEEEeeecccCCHHHHHHhhhcccccccccccchhhhhhhhcccccccccc
Confidence 488999999999998754 355 56999999999999886655432111 010
Q ss_pred ----C-------C------CCCceEEEcCCCCc---eEEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccce
Q 015447 54 ----S-------L------PFPDGVLINGQGHT---TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQ 113 (406)
Q Consensus 54 ----~-------~------~~~d~~liNG~~~~---~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P 113 (406)
+ . .....+||||+... .+.+++|++|||||||+|+.+.|.|+|+||+|+||++||++++|
T Consensus 225 ~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~P 304 (587)
T TIGR01480 225 DRKMWGQMRMTPTDLADVNGSTYTYLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHP 304 (587)
T ss_pred ccccccccccCCcccccccCccceEEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCc
Confidence 0 0 01124899999854 38999999999999999999999999999999999999999999
Q ss_pred eEeeEEEEcCCCeEEEEEEeCCCCceeEEEEEecccCCCcceEEEEEeeCCCCCCCCCCCCCCC---Cchhh-hh-----
Q 015447 114 NIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVLTATAILHYTNSHSPASGPLPTGPT---YEIHW-SM----- 184 (406)
Q Consensus 114 ~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~---~~~~~-~~----- 184 (406)
++++.+.|++||||||+|++++ .|.|+|++....+ .....++|++.+......++++..|. .++.. ..
T Consensus 305 v~vd~l~I~pGeRyDVlV~~~~-~g~~~i~a~~~~~--~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~ 381 (587)
T TIGR01480 305 VSVDEFRIAPAETFDVIVEPTG-DDAFTIFAQDSDR--TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMD 381 (587)
T ss_pred eEeCeEEEcCcceeEEEEecCC-CceEEEEEEecCC--CceEEEEEecCCCCCCCCCCCCCccccChhhccccccccccc
Confidence 9999999999999999999864 5799999876543 23577888876542111111111110 01100 00
Q ss_pred ----hh--hhhcc---------------ccccc--CC--------------CC-----CCCC--------CCCc------
Q 015447 185 ----KQ--ARTFR---------------WNLTA--NA--------------AR-----PNPQ--------GSFH------ 208 (406)
Q Consensus 185 ----~~--~~~~~---------------~~l~~--~~--------------~~-----p~p~--------~~~~------ 208 (406)
.. ..... .+... .. .. ..|. ....
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~ 461 (587)
T TIGR01480 382 HSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHS 461 (587)
T ss_pred ccccccCcccccCccccccccccCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccc
Confidence 00 00000 00000 00 00 0000 0000
Q ss_pred ----cCcccceEEEEEeccccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecC
Q 015447 209 ----YGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNL 284 (406)
Q Consensus 209 ----~~~~~~~~~~~~~~~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~ 284 (406)
+....+++++.+... .....+.|+|||..|.+ . ..+.++.
T Consensus 462 ~~~~~~~~~p~r~~~~~L~--g~m~~~~wtiNG~~~~~-~---------------------------------~pl~v~~ 505 (587)
T TIGR01480 462 LFPPPDGRAPGREIELHLT--GNMERFAWSFDGEAFGL-K---------------------------------TPLRFNY 505 (587)
T ss_pred cccccCcCCCCceEEEEEc--CCCceeEEEECCccCCC-C---------------------------------CceEecC
Confidence 001134555555432 12346789999988642 0 1246899
Q ss_pred CcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceeeEEeeee
Q 015447 285 HEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAI 364 (406)
Q Consensus 285 g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W~~HCHi 364 (406)
|++|+|+|.|...+.||||||||.|+++..+ |. .+.++||+.|+|++++.++|.+||||.|+||||+
T Consensus 506 Gervri~l~N~t~~~HpmHlHG~~f~v~~~~-G~------------~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~ 572 (587)
T TIGR01480 506 GERLRVVLVNDTMMAHPIHLHGMWSELEDGQ-GE------------FQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHM 572 (587)
T ss_pred CCEEEEEEECCCCCCcceeEcCceeeeecCC-Cc------------ccccCCceeeCCCCEEEEEEECCCCeEEEEcCCC
Confidence 9999999999999999999999999998664 32 2467899999999999999999999999999999
Q ss_pred hhhhhcccEEEEEE
Q 015447 365 WERQYLGQQFYLKV 378 (406)
Q Consensus 365 ~~H~~~GM~~~~~v 378 (406)
++|++.||+..++|
T Consensus 573 l~H~~~GM~~~~~v 586 (587)
T TIGR01480 573 LLHMEAGMFREVTV 586 (587)
T ss_pred HHHHhCcCcEEEEe
Confidence 99999999999987
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=2.2e-51 Score=416.74 Aligned_cols=310 Identities=17% Similarity=0.192 Sum_probs=209.4
Q ss_pred CceecceeEEEEEeCCCCCCCCCC-CC-CCeeEEEEeeeecCcHHHHHHHhc--CCCCCCCCceEEEcCCCCceEEEecC
Q 015447 1 MHRAAGGYGGINIYQRPRIPIPYP-IQ-DGDFTLLIGDWFKTNHKILRQTLD--SGKSLPFPDGVLINGQGHTTFNGDQG 76 (406)
Q Consensus 1 ~Q~~~Gl~G~lIV~~~~~~~~p~~-~~-d~e~~l~l~Dw~~~~~~~~~~~~~--~g~~~~~~d~~liNG~~~~~~~v~~G 76 (406)
.|+++||+|+|||+++++.+.+++ .| .+|++|+|+||++....++..... .......+|.+||||+..+.+.++ +
T Consensus 151 ~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~~p~~~v~-~ 229 (523)
T PRK10965 151 RQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAP-R 229 (523)
T ss_pred HHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCcccceeecC-C
Confidence 489999999999999876543333 23 468999999999875544321111 111235789999999998888775 5
Q ss_pred CEEEEEEEecCCCceEEEEE-eCcEEEEEEeCCccc-ceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEEecccC----
Q 015447 77 KTYMFRISNVGLSTSFNFRI-QGHTMKLVEVEGSHT-IQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTK---- 150 (406)
Q Consensus 77 ~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~~-~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~~~~~~---- 150 (406)
++|||||||+|+.+.|.|++ |||+|+|||+||+++ +|..++.|.|+|||||||+|++++ .++|++++......
T Consensus 230 ~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~-~~~~~l~~~~~~~~g~~~ 308 (523)
T PRK10965 230 GWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILMGERFEVLVDTSD-GKAFDLVTLPVSQMGMAL 308 (523)
T ss_pred CEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECccceEEEEEEcCC-CceEEEEEecccCccccc
Confidence 79999999999999999998 899999999999985 899999999999999999999985 57899987543211
Q ss_pred -CCcceEEEEEeeCCCCCCCCCCCCCCCCchhhhhhhhhhcccccccCCCCCCCCCCCccCcccceEEEEEeccc-----
Q 015447 151 -NVLTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSA----- 224 (406)
Q Consensus 151 -~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~----- 224 (406)
.......++++.........++|.. |.+..+.+.+. ....+++.+....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~P~~------------------l~~~~~~~~~~-------~~~~r~~~l~~~~~~~~~ 363 (523)
T PRK10965 309 APFDKPLPVLRIQPLLISASGTLPDS------------------LASLPALPSLE-------GLTVRRLQLSMDPRLDMM 363 (523)
T ss_pred ccCCCceeEEEEeccCcCCCCcCChh------------------hccCCCCCccc-------ccceeEEEEeeccccchh
Confidence 0111345555543321111122210 00000000000 0001111111000
Q ss_pred -----------------------c-c--------cC-----Ce-----EeEEEcCccccCCCCchhcccccCCCcccccC
Q 015447 225 -----------------------P-L--------IN-----GK-----LRYAVNGISYVNSDTPLKLADYFNIPGIFSVN 262 (406)
Q Consensus 225 -----------------------~-~--------~~-----~~-----~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~ 262 (406)
. . .. +. ..|+|||++|.. +.
T Consensus 364 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~-~~----------------- 425 (523)
T PRK10965 364 GMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDM-NK----------------- 425 (523)
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCC-CC-----------------
Confidence 0 0 00 00 124788877742 11
Q ss_pred CCCCCCCCCCCcceeEEEeecCCcEEEEEEEcCCC-CCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeC
Q 015447 263 SIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEK-TMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVY 341 (406)
Q Consensus 263 ~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~N~~~-~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp 341 (406)
..+.++.|++++|.|.|.+. +.|||||||++|+||++++.. .....+.|||||.|+
T Consensus 426 ---------------~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~--------~~~~~~~wkDTv~v~ 482 (523)
T PRK10965 426 ---------------PMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKP--------PAAHRAGWKDTVRVE 482 (523)
T ss_pred ---------------cceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCC--------CCccccccccEEEEC
Confidence 11457899999999999885 689999999999999997421 112246899999998
Q ss_pred CCCEEEEEEEe----cCceeeEEeeeehhhhhcccEEEEEEe
Q 015447 342 PQSWTVILVSL----DNQGMWNMRSAIWERQYLGQQFYLKVW 379 (406)
Q Consensus 342 ~~g~~~irf~a----dnpG~W~~HCHi~~H~~~GM~~~~~v~ 379 (406)
+ +.+.|++++ +++|.|||||||++|++.|||..|.|.
T Consensus 483 ~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 483 G-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred C-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 8 655555443 578899999999999999999999873
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=9.5e-51 Score=408.58 Aligned_cols=300 Identities=16% Similarity=0.142 Sum_probs=206.6
Q ss_pred ceecceeEEEEEeCCCCCCCCCC-CC-CCeeEEEEeeeecCcHHHHHHHhcCCCCCCCCceEEEcCCCCceEEEecCCEE
Q 015447 2 HRAAGGYGGINIYQRPRIPIPYP-IQ-DGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQGHTTFNGDQGKTY 79 (406)
Q Consensus 2 Q~~~Gl~G~lIV~~~~~~~~p~~-~~-d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~~v~~G~~~ 79 (406)
|+++||+|+|||+++.++..+++ .| .+|++|+|+||+.+...... +........++|.+||||+..+.+.|++| +|
T Consensus 152 qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~-~~~~~~~g~~gd~~lvNG~~~p~~~v~~~-~~ 229 (471)
T PRK10883 152 HVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPE-YNEPGSGGFVGDTLLVNGVQSPYVEVSRG-WV 229 (471)
T ss_pred hHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcc-ccccccCCccCCeeEECCccCCeEEecCC-EE
Confidence 88999999999999876544443 23 34899999999987543321 11112224578999999999999999885 89
Q ss_pred EEEEEecCCCceEEEEE-eCcEEEEEEeCCcc-cceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEEecccC-----CC
Q 015447 80 MFRISNVGLSTSFNFRI-QGHTMKLVEVEGSH-TIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTK-----NV 152 (406)
Q Consensus 80 rlRliN~~~~~~~~~~i-~gh~~~via~DG~~-~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~~~~~~-----~~ 152 (406)
||||||+|+.+.+.|+| |||+|+|||+||++ .+|..++.+.|+|||||||+|++++ .+.+.+++...... ..
T Consensus 230 RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~ 308 (471)
T PRK10883 230 RLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERREILVDMSN-GDEVSITAGEAAGIVDRLRGF 308 (471)
T ss_pred EEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeEEEEEECCC-CceEEEECCCccccccccccc
Confidence 99999999999999999 89999999999765 5899999999999999999999975 45666665321100 00
Q ss_pred c------ceEEEEEeeCCCCCCCCCCCCCCCCchhhhhhhhhhcccccccCCCCCCCCCCCccCcccceEEEEEeccccc
Q 015447 153 L------TATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPL 226 (406)
Q Consensus 153 ~------~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~ 226 (406)
. ....+++....... ...+. .++..|.+.. +.+. .....+++.+..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~--~~~~~--------------~~p~~l~~~~--~~~~------~~~~~~~~~l~~---- 360 (471)
T PRK10883 309 FEPSSILVSTLVLTLRPTGLL--PLVTD--------------NLPMRLLPDE--IMEG------SPIRSREISLGD---- 360 (471)
T ss_pred cCCccccccceeEEEEccccc--cCCCC--------------cCChhhcCCC--CCCC------CCcceEEEEecC----
Confidence 0 01122222211000 00000 0000111100 0000 011223343321
Q ss_pred cCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEEEcCCCCCCceeecC
Q 015447 227 INGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDG 306 (406)
Q Consensus 227 ~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~N~~~~~HP~HlHG 306 (406)
..|.|||++|.+... .+.++.|++++|.|.|. +.|||||||
T Consensus 361 ----~~~~INg~~~~~~~~---------------------------------~~~~~~g~~e~W~~~n~--~~HP~HlHg 401 (471)
T PRK10883 361 ----DLPGINGALWDMNRI---------------------------------DVTAQQGTWERWTVRAD--MPQAFHIEG 401 (471)
T ss_pred ----CcCccCCcccCCCcc---------------------------------eeecCCCCEEEEEEECC--CCcCEeECC
Confidence 146899998853110 13578999999999886 689999999
Q ss_pred CCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCce----eeEEeeeehhhhhcccEEEEEEecc
Q 015447 307 YDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG----MWNMRSAIWERQYLGQQFYLKVWNA 381 (406)
Q Consensus 307 ~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG----~W~~HCHi~~H~~~GM~~~~~v~~~ 381 (406)
|.||||++++... ......|||||.|+ +.+.|+++++++| .|||||||++|+|.|||..|+|..+
T Consensus 402 ~~FqVl~~~G~~~--------~~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~~ 470 (471)
T PRK10883 402 VMFLIRNVNGAMP--------FPEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNPA 470 (471)
T ss_pred ccEEEEEecCCCC--------CccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEecC
Confidence 9999999975311 11224799999996 4699999999888 8999999999999999999999653
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.1e-42 Score=345.28 Aligned_cols=310 Identities=19% Similarity=0.183 Sum_probs=211.9
Q ss_pred ceecceeEEEEEeCCCCCCCCCCCCCCeeEEEEeeeecCcHHHHHHHhcCCCCCCCCceEEEcCCCCceEEEecCCEEEE
Q 015447 2 HRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQGHTTFNGDQGKTYMF 81 (406)
Q Consensus 2 Q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~~v~~G~~~rl 81 (406)
|+.+||+|++||++..++ |+ .+|++.++++.+|+.......... .........+..+|||+..+.+.++. .+|||
T Consensus 137 Q~~~Gl~G~~II~~~~~~--~~-~~d~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~vnG~~~p~~~~~~-g~~rl 211 (451)
T COG2132 137 QVYDGLAGALIIEDENSE--PL-GVDDEPVILQDDWLDEDGTDLYQE-GPAMGGFPGDTLLVNGAILPFKAVPG-GVVRL 211 (451)
T ss_pred hhhcccceeEEEeCCCCC--CC-CCCceEEEEEeeeecCCCCccccC-CccccCCCCCeEEECCCccceeecCC-CeEEE
Confidence 899999999999998754 43 568888999999987754433221 11123456799999997666666655 56999
Q ss_pred EEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEEecccCCCcceEEEEEe
Q 015447 82 RISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVLTATAILHY 161 (406)
Q Consensus 82 RliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~~~~~~~~~~~~ail~y 161 (406)
||+|+++.+.+.+++.+++|+||++||.+++|..++.+.|+|||||||++++++ .+.|.+.+...... ....+....
T Consensus 212 Rl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~-~~~~~l~~~~~~~~--~~~~~~~~~ 288 (451)
T COG2132 212 RLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMND-GGAVTLTALGEDMP--DTLKGFRAP 288 (451)
T ss_pred EEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCC-CCeEEEEeccccCC--ceeeeeecc
Confidence 999999888999999999999999999999998899999999999999999985 56777776541111 111122111
Q ss_pred eCCCCCC---CCCCCCCCCCchhhhhhhhhhcccccccCCCCCCCCCCCccCcccceEEEEEeccccccCCeEeEEEcCc
Q 015447 162 TNSHSPA---SGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYAVNGI 238 (406)
Q Consensus 162 ~~~~~~~---~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNg~ 238 (406)
....... ..+....+..+. .... ....+......+.+ ..+..+.+.. ..+...|.+|++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~d~---~~~~--~~~~~~~~~~~~~~---------~~~~~~~l~~----~~~~~~~~~n~~ 350 (451)
T COG2132 289 NPILTPSYPVLNGRVGAPTGDM---ADHA--PVGLLVTILVEPGP---------NRDTDFHLIG----GIGGYVWAINGK 350 (451)
T ss_pred ccccccccccccccccCCCcch---hhcc--ccccchhhcCCCcc---------cccccchhhc----ccccccccccCc
Confidence 1100000 000000111010 0000 00000000000000 0111111211 233456788887
Q ss_pred cccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCC
Q 015447 239 SYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQ 318 (406)
Q Consensus 239 ~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~ 318 (406)
.|.+ + ...+.++.|++++|+|.|.+.+.|||||||+.|+|++.+. .
T Consensus 351 ~~~~-~--------------------------------~~~~~~~~G~~~~~~i~n~~~~~HP~HlHg~~F~v~~~~~-~ 396 (451)
T COG2132 351 AFDD-N--------------------------------RVTLIAKAGTRERWVLTNDTPMPHPFHLHGHFFQVLSGDA-P 396 (451)
T ss_pred cCCC-C--------------------------------cCceeecCCCEEEEEEECCCCCccCeEEcCceEEEEecCC-C
Confidence 7642 0 1225678999999999999999999999999999999971 1
Q ss_pred CCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceeeEEeeeehhhhhcccEEEEEEe
Q 015447 319 WAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVW 379 (406)
Q Consensus 319 ~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W~~HCHi~~H~~~GM~~~~~v~ 379 (406)
.-...+.||||+.+.+++.++|+|.+++||.|+||||+++|++.|||..+.|.
T Consensus 397 --------~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 397 --------APGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred --------cccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 12235799999999999999999999999999999999999999999998874
No 17
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.97 E-value=3.8e-32 Score=231.13 Aligned_cols=107 Identities=32% Similarity=0.498 Sum_probs=96.5
Q ss_pred cceeEEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEec
Q 015447 274 SVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLD 353 (406)
Q Consensus 274 ~~~~~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ad 353 (406)
+.+..++.++.|++|+|+|+|.+.+.||||||||+|+|++++.+.++......+++.+|.||||+.|+++++++|||+++
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~ 109 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD 109 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET
T ss_pred CCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee
Confidence 34567899999999999999999999999999999999999987765444456788899999999999999999999999
Q ss_pred CceeeEEeeeehhhhhcccEEEEEEec
Q 015447 354 NQGMWNMRSAIWERQYLGQQFYLKVWN 380 (406)
Q Consensus 354 npG~W~~HCHi~~H~~~GM~~~~~v~~ 380 (406)
|||.|+||||+++|++.|||+.++|.+
T Consensus 110 ~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 110 NPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp STEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred cceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 999999999999999999999998864
No 18
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.97 E-value=5.4e-31 Score=229.19 Aligned_cols=137 Identities=36% Similarity=0.632 Sum_probs=114.5
Q ss_pred CeeEEEEeeeecCcHHHHHH-HhcCC----CCCCCCceEEEcCCCC-------------ceEEEecCCEEEEEEEecCCC
Q 015447 28 GDFTLLIGDWFKTNHKILRQ-TLDSG----KSLPFPDGVLINGQGH-------------TTFNGDQGKTYMFRISNVGLS 89 (406)
Q Consensus 28 ~e~~l~l~Dw~~~~~~~~~~-~~~~g----~~~~~~d~~liNG~~~-------------~~~~v~~G~~~rlRliN~~~~ 89 (406)
+|++|+|+||||+....+.. ++..+ ..++++|++||||++. +.+.+++|++|||||||+++.
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~ 80 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGAS 80 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCC
Confidence 58999999999997765533 33332 2378999999999763 349999999999999999999
Q ss_pred ceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEEeccc----CCCcceEEEEEeeCC
Q 015447 90 TSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFT----KNVLTATAILHYTNS 164 (406)
Q Consensus 90 ~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~~~~~----~~~~~~~ail~y~~~ 164 (406)
+.+.|+|+||+|+|||+||.+++|++++.+.|++||||||+|++++++|+|||++..... .......|||+|.++
T Consensus 81 ~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~~ 159 (159)
T PF00394_consen 81 TSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDGA 159 (159)
T ss_dssp -BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETTS
T ss_pred eeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECCC
Confidence 999999999999999999999999999999999999999999999878999999963211 124578999999863
No 19
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.92 E-value=9.6e-25 Score=209.07 Aligned_cols=159 Identities=17% Similarity=0.116 Sum_probs=125.3
Q ss_pred ceecceeEEEEEeCCCCCCCCCCCCCCeeEEEEeeeecCcHHHHHH-HhcCC--CCCCCCceEEEcCCCC---ceEEEec
Q 015447 2 HRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQ-TLDSG--KSLPFPDGVLINGQGH---TTFNGDQ 75 (406)
Q Consensus 2 Q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~-~~~~g--~~~~~~d~~liNG~~~---~~~~v~~ 75 (406)
|+..||+|+|||++++. .| .+|+|++|+++||++...+.... +.... ....+++.+||||+.. +.+.+++
T Consensus 133 q~~~Gl~G~liV~~~~~--~~--~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~~~~~v~~ 208 (311)
T TIGR02376 133 HVVSGMNGAIMVLPREG--LP--EYDKEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGALTGDNALTA 208 (311)
T ss_pred HhhcCcceEEEeeccCC--Cc--CcceeEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccCCCCCCccccc
Confidence 88999999999999753 22 55899999999999875432110 00000 0124679999999953 3478999
Q ss_pred CCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeE--eeEEEEcCCCeEEEEEEeCCCCceeEEEEEecccCCCc
Q 015447 76 GKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNI--YDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVL 153 (406)
Q Consensus 76 G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~--~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~~~~~~~~~ 153 (406)
|+++||||||++.++.+.|+++|+.+++|+.||.++.|.. ++.+.|+||||+||+|++++ +|.|++++.........
T Consensus 209 G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG~y~~~~~~~~~~~~~ 287 (311)
T TIGR02376 209 GVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PGVYAYVDHNLIEAFEK 287 (311)
T ss_pred CCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCC-CeEEEEECcHHHHHHhC
Confidence 9999999999999999999999999999999999998744 89999999999999999996 69999998654322123
Q ss_pred ceEEEEEeeCCC
Q 015447 154 TATAILHYTNSH 165 (406)
Q Consensus 154 ~~~ail~y~~~~ 165 (406)
...|+|+|++..
T Consensus 288 g~~~~i~~~g~~ 299 (311)
T TIGR02376 288 GAAAQVKVEGAW 299 (311)
T ss_pred CCEEEEEECCCC
Confidence 477999998753
No 20
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.65 E-value=1.9e-14 Score=138.07 Aligned_cols=242 Identities=12% Similarity=0.026 Sum_probs=153.2
Q ss_pred CceEEEcCCCCc-eEEEecCCEEEEEEEecCC-CceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCC
Q 015447 58 PDGVLINGQGHT-TFNGDQGKTYMFRISNVGL-STSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQ 135 (406)
Q Consensus 58 ~d~~liNG~~~~-~~~v~~G~~~rlRliN~~~-~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~ 135 (406)
.+.+++||+.-. .+.+++|+++++++.|... ...+.++++++. +.||... ...|.|||++.+-+++++
T Consensus 47 ~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t~ty~F~~~~ 116 (311)
T TIGR02376 47 YQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGETATLRFKATR 116 (311)
T ss_pred EEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCeEEEEEEcCC
Confidence 467899999754 4999999999999999864 246788888864 4677531 123899999999999875
Q ss_pred CCceeEEEEEecc--cCCC-cceEEEEEeeCCCCCCCCCCCCCCCCchhhhhhhhhhcccccccCCCCCCCCCCCccCcc
Q 015447 136 PPKDYYIVASTRF--TKNV-LTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKI 212 (406)
Q Consensus 136 ~~g~y~ir~~~~~--~~~~-~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~ 212 (406)
+|.||...+... ..+. ....+.|.+.... +.+ ..+....+- ..+ +.+.+.. .
T Consensus 117 -~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~-----~~~---~~d~e~~l~-l~d--~~~~~~~-----~-------- 171 (311)
T TIGR02376 117 -PGAFVYHCAPPGMVPWHVVSGMNGAIMVLPRE-----GLP---EYDKEYYIG-ESD--LYTPKDE-----G-------- 171 (311)
T ss_pred -CEEEEEEcCCCCchhHHhhcCcceEEEeeccC-----CCc---CcceeEEEe-eee--Eeccccc-----c--------
Confidence 799999887421 1111 1234444444321 111 011110000 000 1111000 0
Q ss_pred cceEEEEEeccccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEE
Q 015447 213 NTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVF 292 (406)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl 292 (406)
....+..............+.|||+.... .| .+.++.|++++|.|
T Consensus 172 -~~~~~~~~~~~~~~~~~~~~~iNG~~~~~--~~--------------------------------~~~v~~G~~~RlRi 216 (311)
T TIGR02376 172 -EGGAYEDDVAAMRTLTPTHVVFNGAVGAL--TG--------------------------------DNALTAGVGERVLF 216 (311)
T ss_pred -ccccccchHHHHhcCCCCEEEECCccCCC--CC--------------------------------CcccccCCcEEEEE
Confidence 00000000000000112356788875421 00 12567899999999
Q ss_pred EcCCC-CCCceeecCCCeEEEeeccCCCCccccccCCCCCCC-ccceEEeCCCCEEEEEEEecCceeeEEeeeehhhh-h
Q 015447 293 QNNEK-TMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTL-TRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQ-Y 369 (406)
Q Consensus 293 ~N~~~-~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~-~rDTv~vp~~g~~~irf~adnpG~W~~HCHi~~H~-~ 369 (406)
.|.+. ..+.||++|++|+++..+++. +..+. ..||+.|.||+.+.|.|++++||.|++|||...+. .
T Consensus 217 iNa~~~~~~~~~~~g~~~~~v~~DG~~----------~~~~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~ 286 (311)
T TIGR02376 217 VHSQPNRDSRPHLIGGHGDYVWVTGKF----------ANPPNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFE 286 (311)
T ss_pred EcCCCCCCCCCeEecCCceEEEECCcc----------cCCCCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHh
Confidence 99976 579999999999999996432 11122 36999999999999999999999999999998887 6
Q ss_pred cccEEEEEEe
Q 015447 370 LGQQFYLKVW 379 (406)
Q Consensus 370 ~GM~~~~~v~ 379 (406)
.||++++.|.
T Consensus 287 ~g~~~~i~~~ 296 (311)
T TIGR02376 287 KGAAAQVKVE 296 (311)
T ss_pred CCCEEEEEEC
Confidence 6999888874
No 21
>PLN02604 oxidoreductase
Probab=99.08 E-value=9.3e-10 Score=114.14 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=69.9
Q ss_pred EeecCCcEEEEEEEcCC-CCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceee
Q 015447 280 MQVNLHEYIEVVFQNNE-KTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 358 (406)
Q Consensus 280 ~~v~~g~~v~ivl~N~~-~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W 358 (406)
+.++.|++|++.+.|.. ...|+||+||+.. .+.. |. .-........|+||+...++|.++++|.|
T Consensus 57 i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~--~~~~---~~---------DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~ 122 (566)
T PLN02604 57 ILAQQGDTVIVELKNSLLTENVAIHWHGIRQ--IGTP---WF---------DGTEGVTQCPILPGETFTYEFVVDRPGTY 122 (566)
T ss_pred EEEECCCEEEEEEEeCCCCCCCCEEeCCCCC--CCCc---cc---------cCCCccccCccCCCCeEEEEEEcCCCEEE
Confidence 67889999999999986 5789999999952 1110 00 00111244578999999999999999999
Q ss_pred EEeeeehhhhhcccEEEEEEecc
Q 015447 359 NMRSAIWERQYLGQQFYLKVWNA 381 (406)
Q Consensus 359 ~~HCHi~~H~~~GM~~~~~v~~~ 381 (406)
.||||...|...||+..+.|..+
T Consensus 123 wyH~H~~~q~~~Gl~G~liV~~~ 145 (566)
T PLN02604 123 LYHAHYGMQREAGLYGSIRVSLP 145 (566)
T ss_pred EEeeCcHHHHhCCCeEEEEEEec
Confidence 99999999999999999998765
No 22
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.05 E-value=1.5e-08 Score=104.93 Aligned_cols=236 Identities=14% Similarity=0.083 Sum_probs=141.3
Q ss_pred ceEEEcCCCCc-eEEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEE---eCCcccceeEeeEEEEcCCCeEEEEEEeC
Q 015447 59 DGVLINGQGHT-TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVE---VEGSHTIQNIYDSLDVHVGQSVSVLVTLN 134 (406)
Q Consensus 59 d~~liNG~~~~-~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via---~DG~~~~P~~~~~i~l~~GeR~dv~v~~~ 134 (406)
..+++||+.-. .+.++.|+++++++.|--.. ...+|.+|- .+.. .||.+- +..-.|.||+.+..-+++.
T Consensus 23 ~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~-~tsiHwHGl--~q~~~~~~DGv~~----vTq~pI~PG~s~~Y~f~~~ 95 (539)
T TIGR03389 23 SILTVNGKFPGPTLYAREGDTVIVNVTNNVQY-NVTIHWHGV--RQLRNGWADGPAY----ITQCPIQPGQSYVYNFTIT 95 (539)
T ss_pred EEEEECCcccCCEEEEEcCCEEEEEEEeCCCC-CeeEecCCC--CCCCCCCCCCCcc----cccCCcCCCCeEEEEEEec
Confidence 57999999855 49999999999999999765 445555554 3332 688752 3444689999999999986
Q ss_pred CCCceeEEEEEecccCCCcceEEEEEeeCCCCCCCCCCCCCCCCchhhhhhhhhhcccccccCCCCCCCCCCCccCcccc
Q 015447 135 QPPKDYYIVASTRFTKNVLTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINT 214 (406)
Q Consensus 135 ~~~g~y~ir~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~ 214 (406)
+..|+||...+... +.....+-|...+... .+.|.. ..+.+ ....|....-..... ..
T Consensus 96 ~~~GT~WYHsH~~~--~~~Gl~G~lIV~~~~~---~~~~~~-~~d~e--------~~l~l~Dw~~~~~~~--------~~ 153 (539)
T TIGR03389 96 GQRGTLWWHAHISW--LRATVYGAIVILPKPG---VPYPFP-KPDRE--------VPIILGEWWNADVEA--------VI 153 (539)
T ss_pred CCCeeEEEecCchh--hhccceEEEEEcCCCC---CCCCCC-CCCce--------EEEEecccccCCHHH--------HH
Confidence 55899999887532 1112233333332211 111110 00100 000011100000000 00
Q ss_pred eEEEEEeccccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEEEc
Q 015447 215 TRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQN 294 (406)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~N 294 (406)
.. . .... ....-...+.|||+...... |. + ....++.++.|++++|+|.|
T Consensus 154 ~~-~-~~~~-~~~~~~d~~liNG~~~~~~~---------------~~------~------~~~~~i~v~~G~~~RlRlIN 203 (539)
T TIGR03389 154 NQ-A-NQTG-GAPNVSDAYTINGHPGPLYN---------------CS------S------KDTFKLTVEPGKTYLLRIIN 203 (539)
T ss_pred HH-H-HhcC-CCCCccceEEECCCcCCCCC---------------CC------C------CCceEEEECCCCEEEEEEEe
Confidence 00 0 0000 00000124678887532100 00 0 01346889999999999999
Q ss_pred CCC-CCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecC-ceeeEEeeee
Q 015447 295 NEK-TMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDN-QGMWNMRSAI 364 (406)
Q Consensus 295 ~~~-~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn-pG~W~~HCHi 364 (406)
.+. ..+-|||+||.|+|++.++ . +..|...|++.|.+|+...|.+.++. +|.|.++-+.
T Consensus 204 a~~~~~~~~~idgH~~~VIa~DG-~----------~~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~ 264 (539)
T TIGR03389 204 AALNDELFFAIANHTLTVVEVDA-T----------YTKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARP 264 (539)
T ss_pred ccCCceEEEEECCCeEEEEEeCC-c----------ccCceEeCeEEecCCCEEEEEEECCCCCceEEEEEec
Confidence 975 4588999999999999984 2 23578889999999999999999975 8988887554
No 23
>PLN02835 oxidoreductase
Probab=99.04 E-value=2e-08 Score=103.30 Aligned_cols=222 Identities=12% Similarity=0.064 Sum_probs=131.8
Q ss_pred ceEEEcCCCCc-eEEEecCCEEEEEEEecCCCceEEEEEeCcEEEE-EEeCCcccceeEeeEEEEcCCCeEEEEEEeCCC
Q 015447 59 DGVLINGQGHT-TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKL-VEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQP 136 (406)
Q Consensus 59 d~~liNG~~~~-~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~ 136 (406)
..++|||+.-. .+.+++|+++++++.|.-.. ...+|.+|-.+.- -..||.+. ..-.|.||+.+..-+++.+.
T Consensus 49 ~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~~-----tQ~pI~PG~sf~Y~F~~~~q 122 (539)
T PLN02835 49 QVILINGQFPGPRLDVVTNDNIILNLINKLDQ-PFLLTWNGIKQRKNSWQDGVLG-----TNCPIPPNSNYTYKFQTKDQ 122 (539)
T ss_pred EEEEECCcCCCCCEEEECCCEEEEEEEeCCCC-CCcEEeCCcccCCCCCCCCCcc-----CcCCCCCCCcEEEEEEECCC
Confidence 57899999755 49999999999999999754 4555555544322 24799643 13478999999999987545
Q ss_pred CceeEEEEEeccc-CCCcceEEEEEeeCCCCCCCCCCCCC-CCCchhhhhhhhhhcccccccCCCCCCCCCCCccCcccc
Q 015447 137 PKDYYIVASTRFT-KNVLTATAILHYTNSHSPASGPLPTG-PTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINT 214 (406)
Q Consensus 137 ~g~y~ir~~~~~~-~~~~~~~ail~y~~~~~~~~~~~p~~-p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~ 214 (406)
.|+||..++...- ...+.+.-|++ .... .+.|.. ...+.. ..|....... .. ..
T Consensus 123 ~GT~WYHsH~~~q~~~Gl~G~lIV~-~~~~----~~~p~~~~d~e~~----------l~l~Dw~~~~-~~--------~~ 178 (539)
T PLN02835 123 IGTFTYFPSTLFHKAAGGFGAINVY-ERPR----IPIPFPLPDGDFT----------LLVGDWYKTS-HK--------TL 178 (539)
T ss_pred CEeEEEEeCccchhcCcccceeEEe-CCCC----CCcCCCCCCceEE----------EEeeccccCC-HH--------HH
Confidence 8999998764220 11122222232 2111 111110 000100 0000000000 00 00
Q ss_pred eEEEEEeccccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEEEc
Q 015447 215 TRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQN 294 (406)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~N 294 (406)
... +.... ...-.....|||+.. ..+.++.|++++|+|.|
T Consensus 179 ~~~--~~~g~-~~~~~d~~liNG~~~-------------------------------------~~~~v~~G~~yRlRliN 218 (539)
T PLN02835 179 QQR--LDSGK-VLPFPDGVLINGQTQ-------------------------------------STFSGDQGKTYMFRISN 218 (539)
T ss_pred HHH--hhcCC-CCCCCceEEEccccC-------------------------------------ceEEECCCCEEEEEEEE
Confidence 000 00000 000011244555421 12568899999999999
Q ss_pred CCCC-CCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEec-CceeeEEe
Q 015447 295 NEKT-MQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLD-NQGMWNMR 361 (406)
Q Consensus 295 ~~~~-~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ad-npG~W~~H 361 (406)
.+.. ..-||+.||+|+|++.++. +..|...|++.|.+|+...+.++++ .+|.|-++
T Consensus 219 a~~~~~~~f~i~gH~~~VI~~DG~-----------~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~ 276 (539)
T PLN02835 219 VGLSTSLNFRIQGHTMKLVEVEGS-----------HTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIV 276 (539)
T ss_pred cCCCccEEEEECCCEEEEEEECCc-----------cCCCceeeEEEECcCceEEEEEEcCCCCCcEEEE
Confidence 9864 7899999999999999853 2236678999999999999999986 46866665
No 24
>PLN02354 copper ion binding / oxidoreductase
Probab=98.97 E-value=4.6e-08 Score=100.91 Aligned_cols=231 Identities=13% Similarity=0.084 Sum_probs=137.2
Q ss_pred ceEEEcCCCCce-EEEecCCEEEEEEEecCCCceEEEEEeCcEEEE-EEeCCcccceeEeeEEEEcCCCeEEEEEEeCCC
Q 015447 59 DGVLINGQGHTT-FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKL-VEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQP 136 (406)
Q Consensus 59 d~~liNG~~~~~-~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~ 136 (406)
..++|||+--.+ +.++.|+++++++.|.... ...+|.+|-.+.- -..||.+. ..-.|.||+.+..-+++.+.
T Consensus 47 ~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~-~ttiHWHGi~q~~~~~~DGv~~-----TQcpI~PG~sf~Y~F~~~~q 120 (552)
T PLN02354 47 QVILINGQFPGPNINSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVPG-----TNCPIPPGTNFTYHFQPKDQ 120 (552)
T ss_pred EEEEECCCCcCCcEEEeCCCEEEEEEEECCCC-CcccccccccCCCCcccCCCcC-----CcCCCCCCCcEEEEEEeCCC
Confidence 579999997655 9999999999999999753 4445555543322 24899653 23479999999999998544
Q ss_pred CceeEEEEEecccCCC-cceEEEEEeeCCCCCCCCCCCCC-CCCchhhhhhhhhhcccccccCCCCCCCCCCCccCcccc
Q 015447 137 PKDYYIVASTRFTKNV-LTATAILHYTNSHSPASGPLPTG-PTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINT 214 (406)
Q Consensus 137 ~g~y~ir~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~~-p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~ 214 (406)
.|+||..++.. .|. ....+-|...+... .+.|.. +..+... .|....-.. . ...
T Consensus 121 ~GT~WYHsH~~--~Q~~~Gl~G~lII~~~~~---~~~p~~~~d~e~~l----------~l~Dw~~~~--~-------~~~ 176 (552)
T PLN02354 121 IGSYFYYPSTG--MHRAAGGFGGLRVNSRLL---IPVPYADPEDDYTV----------LIGDWYTKS--H-------TAL 176 (552)
T ss_pred CcceEEecCcc--ceecCCccceEEEcCCcC---CCCCCCCcCceEEE----------EeeeeccCC--H-------HHH
Confidence 79999987642 221 11222222222210 111110 1011100 000000000 0 000
Q ss_pred eEEEEEeccccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEEEc
Q 015447 215 TRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQN 294 (406)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~N 294 (406)
... +... ..........|||+..... .....++.++.|++++|+|.|
T Consensus 177 ~~~--~~~g-~~~~~~d~~liNG~~~~~~------------------------------~~~~~~~~v~~Gk~yRlRiIN 223 (552)
T PLN02354 177 KKF--LDSG-RTLGRPDGVLINGKSGKGD------------------------------GKDEPLFTMKPGKTYRYRICN 223 (552)
T ss_pred HHH--HhcC-CCCCCCCeEEEeCCcCCCC------------------------------CCCceEEEECCCCEEEEEEEe
Confidence 000 0000 0000012356777632100 001345789999999999999
Q ss_pred CCCC-CCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEec-CceeeEEeee
Q 015447 295 NEKT-MQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLD-NQGMWNMRSA 363 (406)
Q Consensus 295 ~~~~-~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ad-npG~W~~HCH 363 (406)
.+.. ..-||+.||.|+|++.++. +..|...|++.|.+|+...+.++++ .+|.|.+.-.
T Consensus 224 a~~~~~~~f~IdgH~~tVIa~DG~-----------~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~ 283 (552)
T PLN02354 224 VGLKSSLNFRIQGHKMKLVEMEGS-----------HVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVAS 283 (552)
T ss_pred cCCCceEEEEECCceEEEEEeCCc-----------ccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEe
Confidence 9864 6889999999999999853 2236667999999999999999997 4787777655
No 25
>PLN02792 oxidoreductase
Probab=98.94 E-value=5.6e-08 Score=99.87 Aligned_cols=225 Identities=12% Similarity=0.128 Sum_probs=133.9
Q ss_pred ceEEEcCCCCce-EEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEE---eCCcccceeEeeEEEEcCCCeEEEEEEeC
Q 015447 59 DGVLINGQGHTT-FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVE---VEGSHTIQNIYDSLDVHVGQSVSVLVTLN 134 (406)
Q Consensus 59 d~~liNG~~~~~-~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via---~DG~~~~P~~~~~i~l~~GeR~dv~v~~~ 134 (406)
..++|||+--.+ +.+++|+++++++.|-... .. +|+-|-+.+-. .||.+. ..-.|.||+.+..-++++
T Consensus 36 ~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~-~t--tiHWHGl~q~~~~~~DGv~~-----tqcPI~PG~sftY~F~~~ 107 (536)
T PLN02792 36 RGILINGQFPGPEIRSLTNDNLVINVHNDLDE-PF--LLSWNGVHMRKNSYQDGVYG-----TTCPIPPGKNYTYDFQVK 107 (536)
T ss_pred EEEEECCCCCCCcEEEECCCEEEEEEEeCCCC-Cc--CEeCCCcccCCCCccCCCCC-----CcCccCCCCcEEEEEEeC
Confidence 578999998655 9999999999999999753 44 45555555544 899643 124789999999999986
Q ss_pred CCCceeEEEEEeccc-CCCcceEEEEEeeCCCCCCCCCCCCCCCCchhhhhhhhhhcccccccCCCCCCCCCCCccCccc
Q 015447 135 QPPKDYYIVASTRFT-KNVLTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKIN 213 (406)
Q Consensus 135 ~~~g~y~ir~~~~~~-~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~ 213 (406)
+..|+||..++.... ...+.+..|| +.....+ .+++. +..+.. .-|....... .. .
T Consensus 108 ~q~GT~WYHsH~~~q~~~Gl~G~liI-~~~~~~~--~p~~~-~d~e~~----------i~l~Dw~~~~-~~--------~ 164 (536)
T PLN02792 108 DQVGSYFYFPSLAVQKAAGGYGSLRI-YSLPRIP--VPFPE-PAGDFT----------FLIGDWYRRN-HT--------T 164 (536)
T ss_pred CCccceEEecCcchhhhcccccceEE-eCCcccC--cCCCc-ccceeE----------EEecccccCC-HH--------H
Confidence 448999998875321 1112222222 3211100 11110 111110 0010000000 00 0
Q ss_pred ceEEEEEeccccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEEE
Q 015447 214 TTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQ 293 (406)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~ 293 (406)
.... +..............|||+... ...++.++.|++++|+|.
T Consensus 165 ~~~~--~~~g~~~~~~~d~~liNG~~~~----------------------------------~~~~~~v~~Gk~yRlRli 208 (536)
T PLN02792 165 LKKI--LDGGRKLPLMPDGVMINGQGVS----------------------------------YVYSITVDKGKTYRFRIS 208 (536)
T ss_pred HHHH--hhccCcCCCCCCEEEEeccCCC----------------------------------CcceEEECCCCEEEEEEE
Confidence 0000 0000000000123456665311 012467899999999999
Q ss_pred cCCCC-CCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecC-ceeeEEe
Q 015447 294 NNEKT-MQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDN-QGMWNMR 361 (406)
Q Consensus 294 N~~~~-~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn-pG~W~~H 361 (406)
|.+.. ..-|++.||.|+|++.++. +..|...|++.|.+|+.+.+.++++. +|.|.+.
T Consensus 209 Na~~~~~~~f~i~gH~~tVI~~DG~-----------~v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~ 267 (536)
T PLN02792 209 NVGLQTSLNFEILGHQLKLIEVEGT-----------HTVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIV 267 (536)
T ss_pred EcCCCceEEEEECCcEEEEEEeCCc-----------cCCCcceeEEEEccCceEEEEEEcCCCCceEEEE
Confidence 99865 6899999999999999853 22366679999999999999999975 5766555
No 26
>PLN02168 copper ion binding / pectinesterase
Probab=98.92 E-value=1e-07 Score=98.10 Aligned_cols=216 Identities=12% Similarity=0.091 Sum_probs=129.5
Q ss_pred ceEEEcCCCCce-EEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEE---eCCcccceeEeeEEEEcCCCeEEEEEEeC
Q 015447 59 DGVLINGQGHTT-FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVE---VEGSHTIQNIYDSLDVHVGQSVSVLVTLN 134 (406)
Q Consensus 59 d~~liNG~~~~~-~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via---~DG~~~~P~~~~~i~l~~GeR~dv~v~~~ 134 (406)
..+++||+.-.+ +.++.|+++++++.|.-.. ...+|.+| +.+.. +||.+- ..-.|.||+++..-++++
T Consensus 46 ~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~-~ttiHWHG--l~~~~~~~~DGv~g-----tQcpI~PG~sftY~F~~~ 117 (545)
T PLN02168 46 QVIVINDMFPGPLLNATANDVINVNIFNNLTE-PFLMTWNG--LQLRKNSWQDGVRG-----TNCPILPGTNWTYRFQVK 117 (545)
T ss_pred EEEEECCcCCCCcEEEECCCEEEEEEEeCCCC-CccEeeCC--ccCCCCCCcCCCCC-----CcCCCCCCCcEEEEEEeC
Confidence 578999998655 9999999999999999764 45556555 44432 599753 224699999999999986
Q ss_pred CCCceeEEEEEecccCCC-cceEEEEEeeCCCCCCCCCCCCCCCCchhhhhhhhhhcccccccCCCCCCCCCCCccCccc
Q 015447 135 QPPKDYYIVASTRFTKNV-LTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKIN 213 (406)
Q Consensus 135 ~~~g~y~ir~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~ 213 (406)
+..|+||..++.. .|. ....+-|...+... ...+.+. +..+... .|....... .. .
T Consensus 118 ~q~GT~WYHsH~~--~Q~~~GL~G~lII~~~~~-~~~p~~~-~d~e~~l----------~l~Dw~~~~-~~--------~ 174 (545)
T PLN02168 118 DQIGSYFYFPSLL--LQKAAGGYGAIRIYNPEL-VPVPFPK-PDEEYDI----------LIGDWFYAD-HT--------V 174 (545)
T ss_pred CCCceEEEecChh--hhhhCcceeEEEEcCCcc-cCcCcCc-ccceeeE----------EEEecCCCC-HH--------H
Confidence 4489999987643 121 11233333322211 0001110 1011100 010000000 00 0
Q ss_pred ceEEEEEeccccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEEE
Q 015447 214 TTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQ 293 (406)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~ 293 (406)
... .+.... .........|||+... ..++.++.|++++|+|.
T Consensus 175 ~~~--~~~~g~-~~~~~d~~liNG~~~~-----------------------------------~~~~~v~~G~~yRlRii 216 (545)
T PLN02168 175 MRA--SLDNGH-SLPNPDGILFNGRGPE-----------------------------------ETFFAFEPGKTYRLRIS 216 (545)
T ss_pred HHh--hhhcCC-CCCCCCEEEEeccCCC-----------------------------------cceEEeCCCCEEEEEEE
Confidence 000 000000 0000113445654210 12467889999999999
Q ss_pred cCCCC-CCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecC
Q 015447 294 NNEKT-MQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDN 354 (406)
Q Consensus 294 N~~~~-~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn 354 (406)
|.+.. .+-|++.||+|+|++.++. +..|...|++.|.+|+...+.+++++
T Consensus 217 Na~~~~~~~~~IdgH~~tVIa~DG~-----------~v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 217 NVGLKTCLNFRIQDHDMLLVETEGT-----------YVQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred eccCCceEEEEECCcEEEEEEECCe-----------ECCCceeeEEEEcCCceEEEEEEcCC
Confidence 98764 6899999999999998842 23466789999999999999999963
No 27
>PLN02991 oxidoreductase
Probab=98.91 E-value=7.2e-08 Score=99.01 Aligned_cols=223 Identities=11% Similarity=0.091 Sum_probs=133.0
Q ss_pred ceEEEcCCCCce-EEEecCCEEEEEEEecCCCceEEEEEeCcEEE-EEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCC
Q 015447 59 DGVLINGQGHTT-FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMK-LVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQP 136 (406)
Q Consensus 59 d~~liNG~~~~~-~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~-via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~ 136 (406)
..++|||+.-.+ +.++.|+++++++.|.-.. ...+|.+|-.+. --.+||.+. ..-.|.||+.+..-+++++.
T Consensus 48 ~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~-~ttiHWHGi~q~~~~~~DGv~~-----tQcpI~PG~sftY~F~~~~q 121 (543)
T PLN02991 48 QGILINGKFPGPDIISVTNDNLIINVFNHLDE-PFLISWSGIRNWRNSYQDGVYG-----TTCPIPPGKNYTYALQVKDQ 121 (543)
T ss_pred EEEEEcCCCCCCcEEEECCCEEEEEecCCCCC-CccEEECCcccCCCccccCCCC-----CCCccCCCCcEEEEEEeCCC
Confidence 578999998655 9999999999999999754 555555554422 134899643 23469999999999998645
Q ss_pred CceeEEEEEecccCCCcceEEEEEeeCCCCCCCCCCCCC-CCCchhhhhhhhhhcccccccCCCCCCCCCCCccCcccce
Q 015447 137 PKDYYIVASTRFTKNVLTATAILHYTNSHSPASGPLPTG-PTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTT 215 (406)
Q Consensus 137 ~g~y~ir~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~-p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~ 215 (406)
.|+||..++.... ......+-|...+... .+.|.. +..+.. .-|....-.. .. ...
T Consensus 122 ~GT~WYHsH~~~q-~~~Gl~G~lIV~~~~~---~~~p~~~~d~d~~----------i~l~DW~~~~-~~--------~~~ 178 (543)
T PLN02991 122 IGSFYYFPSLGFH-KAAGGFGAIRISSRPL---IPVPFPAPADDYT----------VLIGDWYKTN-HK--------DLR 178 (543)
T ss_pred CcceEEecCcchh-hhCCCeeeEEEeCCcc---cCcccccccceeE----------EEecceecCC-HH--------HHH
Confidence 8999998875321 0111233332222210 111110 000100 0000000000 00 000
Q ss_pred EEEEEeccccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEEEcC
Q 015447 216 RTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNN 295 (406)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~N~ 295 (406)
.. +... ....-.....|||+.. ...+.++.|++++|+|.|.
T Consensus 179 ~~--~~~~-~~~~~~d~~liNG~~~------------------------------------~~~~~v~~G~~yRlRiINa 219 (543)
T PLN02991 179 AQ--LDNG-GKLPLPDGILINGRGS------------------------------------GATLNIEPGKTYRLRISNV 219 (543)
T ss_pred HH--hhcC-CCCCCCCEEEEccCCC------------------------------------CceEEECCCCEEEEEEEec
Confidence 00 0000 0000011344555421 1236788999999999999
Q ss_pred CCC-CCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecC-ce-eeEE
Q 015447 296 EKT-MQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDN-QG-MWNM 360 (406)
Q Consensus 296 ~~~-~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn-pG-~W~~ 360 (406)
+.. .+-|++.||.|+|++.++. +..|...|++.|.+|+...+.+.+++ +| .|+.
T Consensus 220 ~~~~~~~~~idgH~~tVIa~DG~-----------~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~ 276 (543)
T PLN02991 220 GLQNSLNFRIQNHTMKLVEVEGT-----------HTIQTPFSSLDVHVGQSYSVLITADQPAKDYYIV 276 (543)
T ss_pred cCCeeEEEEECCCEEEEEEeCCc-----------cccceeeeEEEEcCCcEEEEEEECCCCCCcEEEE
Confidence 865 5899999999999999842 23467789999999999999999976 45 5654
No 28
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.90 E-value=7.1e-09 Score=85.08 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=67.4
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecC-ce
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDN-QG 356 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn-pG 356 (406)
+++.++.|+.|+|.+.|.....+.+|.||...---....|. +..- .-.|+||+..+.+|.++. +|
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~-------------~~~~-~~~i~pG~~~~Y~~~~~~~~G 91 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGV-------------PGVT-QCPIAPGESFTYEFTANQQAG 91 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGG-------------TTTS-GSSBSTTEEEEEEEEESSCSE
T ss_pred CEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCc-------------cccc-ceeEEeecceeeeEeeecccc
Confidence 35788999999999999988899999999663100001110 0000 124788999999999988 99
Q ss_pred eeEEeeeehhhhhcccEEEEEEecc
Q 015447 357 MWNMRSAIWERQYLGQQFYLKVWNA 381 (406)
Q Consensus 357 ~W~~HCHi~~H~~~GM~~~~~v~~~ 381 (406)
.|.||||...+..+||...+.|.++
T Consensus 92 t~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 92 TYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9999999988877999999988654
No 29
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.87 E-value=1.6e-07 Score=97.06 Aligned_cols=234 Identities=14% Similarity=0.127 Sum_probs=137.5
Q ss_pred ceEEEcCCCCc-eEEEecCCEEEEEEEecCCCceEEEEEeCcEEE-EEEeCCcccceeEeeEEEEcCCCeEEEEEEeC-C
Q 015447 59 DGVLINGQGHT-TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMK-LVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLN-Q 135 (406)
Q Consensus 59 d~~liNG~~~~-~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~-via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~-~ 135 (406)
..++|||+.-. .+.++.|+++++++.|.-......+|.+|-.+. --..||.+- +..-.|.||+.+..-++++ +
T Consensus 28 ~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~----vTQcpI~PG~sf~Y~f~~~~~ 103 (538)
T TIGR03390 28 YSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPL----ASQWPIPPGHFFDYEIKPEPG 103 (538)
T ss_pred EEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcc----cccCCCCCCCcEEEEEEecCC
Confidence 57999999855 499999999999999986544566666665432 224799874 2233588999999999875 3
Q ss_pred CCceeEEEEEecccCCCcceEEEEEeeCCCCCCCCCCCCCCCCchhhhhhhhhhcccccccCCCCCCCCCCCccCcccce
Q 015447 136 PPKDYYIVASTRFTKNVLTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTT 215 (406)
Q Consensus 136 ~~g~y~ir~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~ 215 (406)
..|+||...+... |.....+-|...+... .+.. .+.+ +..-|....-.+ . ....
T Consensus 104 q~GT~WYHsH~~~--Q~~~l~G~lIV~~~~~---~~~~----~d~e--------~~l~l~Dw~~~~--~-------~~~~ 157 (538)
T TIGR03390 104 DAGSYFYHSHVGF--QAVTAFGPLIVEDCEP---PPYK----YDDE--------RILLVSDFFSAT--D-------EEIE 157 (538)
T ss_pred CCeeeEEecCCch--hhhcceeEEEEccCCc---cCCC----ccCc--------EEEEEeCCCCCC--H-------HHHH
Confidence 5799999876532 2212334443333210 0110 0100 000011100000 0 0000
Q ss_pred EEEEEeccccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEEEcC
Q 015447 216 RTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNN 295 (406)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~N~ 295 (406)
..+ ...............|||+........+. + . ...| ...++.++.|++++|+|.|.
T Consensus 158 ~~~-~~~~~~~~~~~d~~liNG~~~~~~~~~~~-------------~-----~--~~~~-~~~~~~v~~G~~yRlRlINa 215 (538)
T TIGR03390 158 QGL-LSTPFTWSGETEAVLLNGKSGNKSFYAQI-------------N-----P--SGSC-MLPVIDVEPGKTYRLRFIGA 215 (538)
T ss_pred hhh-hccCCccCCCCceEEECCccccccccccc-------------c-----C--CCCC-cceEEEECCCCEEEEEEEcc
Confidence 000 00000000111245678874321000000 0 0 0011 13468899999999999999
Q ss_pred CCC-CCceeecCCC-eEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCc
Q 015447 296 EKT-MQSWHLDGYD-FWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQ 355 (406)
Q Consensus 296 ~~~-~HP~HlHG~~-F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnp 355 (406)
+.. ..-|++.||. |+|++.++. +..|...|++.|.+|+...|.++++.+
T Consensus 216 ~~~~~~~~~idgH~~~~VIa~DG~-----------~~~P~~v~~l~l~~GqRydVlv~~~~~ 266 (538)
T TIGR03390 216 TALSLISLGIEDHENLTIIEADGS-----------YTKPAKIDHLQLGGGQRYSVLFKAKTE 266 (538)
T ss_pred CCceEEEEEECCCCeEEEEEeCCC-----------CCCceEeCeEEEccCCEEEEEEECCCc
Confidence 865 5789999999 999999853 345888999999999999999999764
No 30
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=98.78 E-value=8.1e-07 Score=92.15 Aligned_cols=247 Identities=13% Similarity=0.176 Sum_probs=137.5
Q ss_pred ceEEEcCCCCc-eEEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCC
Q 015447 59 DGVLINGQGHT-TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP 137 (406)
Q Consensus 59 d~~liNG~~~~-~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~ 137 (406)
..+++||+.-. .+.+++|+++++++.|.-.. ...+|.+|-... -+.||.+- +..-.|.||+.++.-+++.+ +
T Consensus 65 ~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~-~tsiHwHGl~~~-~~~DGvP~----vt~~~I~PG~s~~Y~f~~~~-~ 137 (587)
T TIGR01480 65 PAITVNGSIPGPLLRWREGDTVRLRVTNTLPE-DTSIHWHGILLP-FQMDGVPG----VSFAGIAPGETFTYRFPVRQ-S 137 (587)
T ss_pred EEEEECCccCCceEEEECCCEEEEEEEcCCCC-CceEEcCCCcCC-ccccCCCc----ccccccCCCCeEEEEEECCC-C
Confidence 57899998755 49999999999999998764 566777765432 24788863 22335899999999999875 7
Q ss_pred ceeEEEEEecccCCCcceEEEEEeeCCCCCCCCCCCCCCCCch-----hhhhhhhhhcccccccCC---CCCCCCC-CCc
Q 015447 138 KDYYIVASTRFTKNVLTATAILHYTNSHSPASGPLPTGPTYEI-----HWSMKQARTFRWNLTANA---ARPNPQG-SFH 208 (406)
Q Consensus 138 g~y~ir~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~-----~~~~~~~~~~~~~l~~~~---~~p~p~~-~~~ 208 (406)
|.||...+....-+ ....+-|....... .+... ..+. +|.......+...|.... ....+.. .+.
T Consensus 138 GTyWYHsH~~~q~~-~GL~G~lIV~~~~~---~p~~~--D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~~~ 211 (587)
T TIGR01480 138 GTYWYHSHSGFQEQ-AGLYGPLIIDPAEP---DPVRA--DREHVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFF 211 (587)
T ss_pred eeEEEecCchhHhh-ccceEEEEECCCcc---ccCCC--CceEEEEeeecccCCHHHHHHhhhcccccccccccchhhhh
Confidence 99999876421111 11233333332110 11110 0111 111000000000000000 0000000 000
Q ss_pred --cCcccc-----eEEEEEecc-c--c---ccCC-eEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCc
Q 015447 209 --YGKINT-----TRTIVLANS-A--P---LING-KLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASS 274 (406)
Q Consensus 209 --~~~~~~-----~~~~~~~~~-~--~---~~~~-~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 274 (406)
...... ++.+ +... . . ...| .+.+.+||+.-
T Consensus 212 ~~~~~~G~~~~~~~~~~-~~~~~~~~~d~~dv~G~~~~~LiNG~~~---------------------------------- 256 (587)
T TIGR01480 212 RDVRNDGLKQTLADRKM-WGQMRMTPTDLADVNGSTYTYLMNGTTP---------------------------------- 256 (587)
T ss_pred hhhcccccccccccccc-ccccccCCcccccccCccceEEEcCccC----------------------------------
Confidence 000000 0000 0000 0 0 0000 01122333210
Q ss_pred ceeEEEeecCCcEEEEEEEcCCCC-CCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEec
Q 015447 275 VATSVMQVNLHEYIEVVFQNNEKT-MQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLD 353 (406)
Q Consensus 275 ~~~~~~~v~~g~~v~ivl~N~~~~-~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ad 353 (406)
....++.++.|++++|.|.|.+.. ..-++|.||+|+|++.++. +..|...|++.|.+|+.+.|.+.+.
T Consensus 257 ~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~-----------~v~Pv~vd~l~I~pGeRyDVlV~~~ 325 (587)
T TIGR01480 257 AGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQ-----------YVHPVSVDEFRIAPAETFDVIVEPT 325 (587)
T ss_pred CCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCc-----------CcCceEeCeEEEcCcceeEEEEecC
Confidence 011236788999999999999865 6999999999999999853 2257778999999999999999987
Q ss_pred CceeeEEeeee
Q 015447 354 NQGMWNMRSAI 364 (406)
Q Consensus 354 npG~W~~HCHi 364 (406)
..|.|.+....
T Consensus 326 ~~g~~~i~a~~ 336 (587)
T TIGR01480 326 GDDAFTIFAQD 336 (587)
T ss_pred CCceEEEEEEe
Confidence 78899888765
No 31
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.77 E-value=7.1e-07 Score=92.44 Aligned_cols=234 Identities=14% Similarity=0.182 Sum_probs=136.2
Q ss_pred ceEEEcCCCCce-EEEecCCEEEEEEEecCCCceEEEEEeCcEEEEE-EeCCcccceeEeeEEEEcCCCeEEEEEEeCCC
Q 015447 59 DGVLINGQGHTT-FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLV-EVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQP 136 (406)
Q Consensus 59 d~~liNG~~~~~-~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~ 136 (406)
..++|||+--.+ +.++.|+++++++.|.... ...+|.+|-.+.-- -.||.+. ..-.|.||+.+..-+++++.
T Consensus 49 ~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~-~ttIHWHGl~q~~t~w~DGv~~-----TQcPI~PG~sftY~F~~~dq 122 (596)
T PLN00044 49 EAIGINGQFPGPALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGVGG-----TNCAIPAGWNWTYQFQVKDQ 122 (596)
T ss_pred EEEEEcCcCCCCcEEEECCCEEEEEEEeCCCC-CccEEECCccCCCCccccCCCC-----CcCCcCCCCcEEEEEEeCCC
Confidence 578999998655 9999999999999999754 56777777554332 4899642 33579999999999999645
Q ss_pred CceeEEEEEecccCCC-cceEEEEEeeCCCCCCCCCCCCC-CC-CchhhhhhhhhhcccccccCCCCCCCCCCCccCccc
Q 015447 137 PKDYYIVASTRFTKNV-LTATAILHYTNSHSPASGPLPTG-PT-YEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKIN 213 (406)
Q Consensus 137 ~g~y~ir~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~~-p~-~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~ 213 (406)
.|+||..++... |. ....+-|...+... .+.|.. +. .+.. .-|....... .. .
T Consensus 123 ~GT~WYHsH~~~--Q~~~Gl~GalII~~~~~---~~~P~~~~~~~e~~----------i~l~DW~~~~-~~--------~ 178 (596)
T PLN00044 123 VGSFFYAPSTAL--HRAAGGYGAITINNRDV---IPIPFGFPDGGDIT----------LFIADWYARD-HR--------A 178 (596)
T ss_pred CceeEeeccchh--hhhCcCeeEEEEcCccc---ccccccCCcccceE----------EEecccccCC-HH--------H
Confidence 899999886532 21 11222232222211 111110 10 0110 0010000000 00 0
Q ss_pred ceEEEEEeccccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEEE
Q 015447 214 TTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQ 293 (406)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~ 293 (406)
... .+... ..........|||+.-...+... .+. + ....++.++.|++++|+|.
T Consensus 179 ~~~--~l~~g-~~~~~~d~~lING~g~~~~n~~~-------------------~~~-~---~~~~~i~V~~Gk~yRlRiI 232 (596)
T PLN00044 179 LRR--ALDAG-DLLGAPDGVLINAFGPYQYNDSL-------------------VPP-G---ITYERINVDPGKTYRFRVH 232 (596)
T ss_pred HHH--HHhcC-CCCCCCCceEEcccCccccCCcc-------------------ccC-C---CccceEEECCCCEEEEEEE
Confidence 000 00000 00000112235554211000000 000 0 0123688999999999999
Q ss_pred cCCCC-CCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCc-e--eeE
Q 015447 294 NNEKT-MQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQ-G--MWN 359 (406)
Q Consensus 294 N~~~~-~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnp-G--~W~ 359 (406)
|.+.. .--|+|-||+|.|++.++ . +..|...|++.|.+|+...+.++|+.+ | .|+
T Consensus 233 Naa~~~~~~fsIdgH~mtVIa~DG-~----------~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i 291 (596)
T PLN00044 233 NVGVATSLNFRIQGHNLLLVEAEG-S----------YTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYV 291 (596)
T ss_pred EccCCceEEEEECCCEEEEEEeCC-c----------ccCceeeeeEEEcCCceEEEEEECCCCCCCceEE
Confidence 98754 567999999999999984 3 335788899999999999999999864 5 677
No 32
>PRK10883 FtsI repressor; Provisional
Probab=98.75 E-value=4.8e-07 Score=91.94 Aligned_cols=223 Identities=15% Similarity=0.130 Sum_probs=129.5
Q ss_pred ceEEEcCCCCc-eEEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCC
Q 015447 59 DGVLINGQGHT-TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP 137 (406)
Q Consensus 59 d~~liNG~~~~-~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~ 137 (406)
..+.+||+.-. .+.+++|+++++++.|.-.. ...+|.+|-.+.- +.||..- ..|.||++|++.+..++.+
T Consensus 66 ~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~-~ttiHwHGl~~~~-~~~~g~~-------~~I~PG~~~~y~f~~~~~a 136 (471)
T PRK10883 66 SVWGINGRYLGPTIRVWKGDDVKLIYSNRLTE-PVSMTVSGLQVPG-PLMGGPA-------RMMSPNADWAPVLPIRQNA 136 (471)
T ss_pred eEEEECCcccCCeEEEECCCEEEEEEEeCCCC-CCceeECCccCCC-CCCCCcc-------ccCCCCCeEEEEEecCCCc
Confidence 56899998754 59999999999999998754 5567776654221 1133321 1388999999999888888
Q ss_pred ceeEEEEEecc--cCCCc-ceEEEEEeeCCCCCCCCCCCCCCC-CchhhhhhhhhhcccccccCCCCCCCCCCCccCccc
Q 015447 138 KDYYIVASTRF--TKNVL-TATAILHYTNSHSPASGPLPTGPT-YEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKIN 213 (406)
Q Consensus 138 g~y~ir~~~~~--~~~~~-~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~ 213 (406)
|+||...+... ..|.. ...+.|...... ....++|..=. .+....+. + +.+... +
T Consensus 137 GT~WYH~H~~~~t~~qv~~GL~G~lII~d~~-~~~~~~p~~~~~~d~~l~l~---D--~~~~~~-------g-------- 195 (471)
T PRK10883 137 ATCWYHANTPNRMAQHVYNGLAGMWLVEDEV-SKSLPIPNHYGVDDFPVIIQ---D--KRLDNF-------G-------- 195 (471)
T ss_pred eeeEEccCCCCchhhhHhcCCeEEEEEeCCc-ccccCCcccCCCcceeEEee---e--eeeccC-------C--------
Confidence 99999877432 11211 112222222221 11011111000 00000000 0 000000 0
Q ss_pred ceEEEEEeccccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEEE
Q 015447 214 TTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQ 293 (406)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~ 293 (406)
..................|||+.+ ..+.++.+ +++|+|.
T Consensus 196 ---~~~~~~~~~~g~~gd~~lvNG~~~-------------------------------------p~~~v~~~-~~RlRli 234 (471)
T PRK10883 196 ---TPEYNEPGSGGFVGDTLLVNGVQS-------------------------------------PYVEVSRG-WVRLRLL 234 (471)
T ss_pred ---CccccccccCCccCCeeEECCccC-------------------------------------CeEEecCC-EEEEEEE
Confidence 000000000000011244555421 12456654 7899999
Q ss_pred cCCCC-CCceee-cCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceeeEEee
Q 015447 294 NNEKT-MQSWHL-DGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRS 362 (406)
Q Consensus 294 N~~~~-~HP~Hl-HG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W~~HC 362 (406)
|.+.. ..-+++ +||.|+|++.++|. +..|...|.+.+.+|+.+.|.+.+++.+.+.+++
T Consensus 235 Nas~~~~~~l~l~d~~~~~vIa~DGg~----------~~~P~~~~~l~l~pGeR~dvlVd~~~~~~~~l~~ 295 (471)
T PRK10883 235 NASNARRYQLQMSDGRPLHVIAGDQGF----------LPAPVSVKQLSLAPGERREILVDMSNGDEVSITA 295 (471)
T ss_pred EccCCceEEEEEcCCCeEEEEEeCCCc----------ccCCcEeCeEEECCCCeEEEEEECCCCceEEEEC
Confidence 99864 577888 89999999999763 3357778999999999999999988777888877
No 33
>PLN02191 L-ascorbate oxidase
Probab=98.67 E-value=1.8e-06 Score=89.79 Aligned_cols=251 Identities=13% Similarity=0.131 Sum_probs=137.6
Q ss_pred CceEEEcCCCCc-eEEEecCCEEEEEEEecCCCceEEEEEeCcEEEE-EEeCCcccceeEeeEEEEcCCCeEEEEEEeCC
Q 015447 58 PDGVLINGQGHT-TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKL-VEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQ 135 (406)
Q Consensus 58 ~d~~liNG~~~~-~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~ 135 (406)
-..++|||+.-. .+.++.|+++++++.|.-......+|.+|..+.= -..||.+- +..-.|.||+.+...+++++
T Consensus 42 ~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~g----vtq~pI~PG~s~~Y~f~~~~ 117 (574)
T PLN02191 42 GAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG----VTQCAINPGETFTYKFTVEK 117 (574)
T ss_pred eeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCc----cccCCcCCCCeEEEEEECCC
Confidence 368999999755 4999999999999999865556677777764321 23688753 23356899999999999975
Q ss_pred CCceeEEEEEecccCCC-cceEEEEEeeCCCCCCCCCCCCCCCCchhhhhhhhhhcccccccCCCCCCCCCCCccCcccc
Q 015447 136 PPKDYYIVASTRFTKNV-LTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINT 214 (406)
Q Consensus 136 ~~g~y~ir~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~ 214 (406)
.|.||.+.+... |. ....+-|.......+ ..+.....+... .|....-...+..
T Consensus 118 -~GT~wYHsH~~~--q~~~Gl~G~liV~~~~~~---~~~~~~d~e~~l----------~l~Dw~~~~~~~~--------- 172 (574)
T PLN02191 118 -PGTHFYHGHYGM--QRSAGLYGSLIVDVAKGP---KERLRYDGEFNL----------LLSDWWHESIPSQ--------- 172 (574)
T ss_pred -CeEEEEeeCcHH--HHhCCCEEEEEEccCCCC---CCCCCCCeeEEE----------eeeccccCChHHH---------
Confidence 799999876531 21 112333333222111 011101111100 0000000000000
Q ss_pred eEEEEEec-cccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEEE
Q 015447 215 TRTIVLAN-SAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQ 293 (406)
Q Consensus 215 ~~~~~~~~-~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~ 293 (406)
. ..+.. ............|||+.-..-...... ..+..+..|. ...+ +.+ ...++.++.|++++|+|.
T Consensus 173 ~--~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~--~~~~~~~~~~-----~~~n-~~~-~p~~~~v~~G~~yRlRiI 241 (574)
T PLN02191 173 E--LGLSSKPMRWIGEAQSILINGRGQFNCSLAAQF--SNGTELPMCT-----FKEG-DQC-APQTLRVEPNKTYRIRLA 241 (574)
T ss_pred H--HhhccCCCCcCCCCCceEECCCCCCCCcccccc--cCCcccccce-----eccC-CCC-CceEEEEcCCCEEEEEEE
Confidence 0 00000 000000112345666532110000000 0000000000 0000 000 123689999999999999
Q ss_pred cCCC-CCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecC-ce--eeE
Q 015447 294 NNEK-TMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDN-QG--MWN 359 (406)
Q Consensus 294 N~~~-~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn-pG--~W~ 359 (406)
|.+. ..+-|++.||+|+|++.++. +..|...|++.|.+|+...+.++++. +| .|+
T Consensus 242 Na~~~~~~~~~idgH~~tVIa~DG~-----------~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~i 300 (574)
T PLN02191 242 STTALASLNLAVQGHKLVVVEADGN-----------YITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYI 300 (574)
T ss_pred ecCCceeEEEEECCCeEEEEEcCCe-----------eccceEeeeEEEcCCCeEEEEEECCCCCCCCEEE
Confidence 9975 47889999999999999842 23578899999999999999999975 44 454
No 34
>PRK10965 multicopper oxidase; Provisional
Probab=98.63 E-value=3.7e-06 Score=86.48 Aligned_cols=224 Identities=17% Similarity=0.179 Sum_probs=131.9
Q ss_pred ceEEEcCCCCc-eEEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCC
Q 015447 59 DGVLINGQGHT-TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP 137 (406)
Q Consensus 59 d~~liNG~~~~-~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~ 137 (406)
..+.+||+.-. .+.+++|+++++++.|.-.. ...+|.+|-.+. -+.||.+ ...|.||++++.-+++++++
T Consensus 66 ~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~-~ttiHwHGl~~~-~~~DG~p-------q~~I~PG~s~~Y~f~~~q~a 136 (523)
T PRK10965 66 ATWGYNGNLLGPAVRLQRGKAVTVDITNQLPE-ETTLHWHGLEVP-GEVDGGP-------QGIIAPGGKRTVTFTVDQPA 136 (523)
T ss_pred EEEEECCCCCCceEEEECCCEEEEEEEECCCC-CccEEcccccCC-CccCCCC-------CCCCCCCCEEEEEeccCCCC
Confidence 47899998754 49999999999999998654 566777765432 2488864 23478999999999998878
Q ss_pred ceeEEEEEecc--cCCCc-ceEEEEEeeCCCCCCCCCCCCCC-CCchhhhhhhhhhcccccccCCCCCCCCCCCccCccc
Q 015447 138 KDYYIVASTRF--TKNVL-TATAILHYTNSHSPASGPLPTGP-TYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKIN 213 (406)
Q Consensus 138 g~y~ir~~~~~--~~~~~-~~~ail~y~~~~~~~~~~~p~~p-~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~ 213 (406)
|+||...+... ..|.. ...+-|.+..... ...++|..- ..++...+. + +.+.. .+
T Consensus 137 GT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~-~~~~lp~~~~~~d~~lvlq---D--~~~~~-------~g-------- 195 (523)
T PRK10965 137 ATCWFHPHQHGKTGRQVAMGLAGLVLIEDDES-LKLGLPKQWGVDDIPVILQ---D--KRFSA-------DG-------- 195 (523)
T ss_pred ceEEEecCCCCCcHHHHhCcCeEEEEEcCccc-cccCCcccCCCceeeEEEE---e--eeeCC-------CC--------
Confidence 99999887521 11211 1223333332211 101122100 001100000 0 00000 00
Q ss_pred ceEEEEEeccccccCC--eEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEE
Q 015447 214 TTRTIVLANSAPLING--KLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVV 291 (406)
Q Consensus 214 ~~~~~~~~~~~~~~~~--~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~iv 291 (406)
...+..... ....+ .....|||+.+ |. +.++ +++++|+
T Consensus 196 -~~~~~~~~~-~~~~g~~gd~~lVNG~~~-----p~--------------------------------~~v~-~~~~RlR 235 (523)
T PRK10965 196 -QIDYQLDVM-TAAVGWFGDTLLTNGAIY-----PQ--------------------------------HAAP-RGWLRLR 235 (523)
T ss_pred -ceecccccc-ccccCccCCeEEECCccc-----ce--------------------------------eecC-CCEEEEE
Confidence 000000000 00000 12356677632 11 2233 6699999
Q ss_pred EEcCCCC-CCceee-cCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceeeEEee
Q 015447 292 FQNNEKT-MQSWHL-DGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRS 362 (406)
Q Consensus 292 l~N~~~~-~HP~Hl-HG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W~~HC 362 (406)
|.|.+.. ..-+.+ .||.|+|++.++|. +..|...|++.|.+|+.+.|.+.+++.|.+.+..
T Consensus 236 liNas~~r~~~l~~~dg~~~~vIa~DG~~----------l~~P~~v~~l~lapGeR~dvlv~~~~~~~~~l~~ 298 (523)
T PRK10965 236 LLNGCNARSLNLATSDGRPLYVIASDGGL----------LAEPVKVSELPILMGERFEVLVDTSDGKAFDLVT 298 (523)
T ss_pred EEeccCCceEEEEEcCCceEEEEEeCCCc----------ccCccEeCeEEECccceEEEEEEcCCCceEEEEE
Confidence 9999753 333454 79999999998653 3457888999999999999999988888777665
No 35
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.57 E-value=2.3e-07 Score=96.00 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=68.0
Q ss_pred EeecCCcEEEEEEEcCC-CCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceee
Q 015447 280 MQVNLHEYIEVVFQNNE-KTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 358 (406)
Q Consensus 280 ~~v~~g~~v~ivl~N~~-~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W 358 (406)
+.++.|+.|+|.+.|.. ...+.||+||.+. .+. .|... .|. -..-.|+||+....+|.++.+|.|
T Consensus 34 i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~--~~~---~~~DG--------~~~-vtq~~I~PG~s~~y~f~~~~~Gt~ 99 (541)
T TIGR03388 34 IRAQAGDTIVVELTNKLHTEGVVIHWHGIRQ--IGT---PWADG--------TAG-VTQCAINPGETFIYNFVVDRPGTY 99 (541)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEEecCcCC--cCC---cccCC--------CCc-cccCCcCCCCEEEEEEEcCCCEEE
Confidence 67889999999999986 4689999999952 111 00000 011 122367899999999999999999
Q ss_pred EEeeeehhhhhcccEEEEEEecc
Q 015447 359 NMRSAIWERQYLGQQFYLKVWNA 381 (406)
Q Consensus 359 ~~HCHi~~H~~~GM~~~~~v~~~ 381 (406)
.||||...|...||...+.|.++
T Consensus 100 wyH~H~~~q~~~Gl~G~liV~~~ 122 (541)
T TIGR03388 100 FYHGHYGMQRSAGLYGSLIVDVP 122 (541)
T ss_pred EEEecchHHhhccceEEEEEecC
Confidence 99999999999999999998755
No 36
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.46 E-value=6.3e-07 Score=77.83 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=76.3
Q ss_pred eEEEeecCCcEEEEEEEcCCCC-CCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecC-
Q 015447 277 TSVMQVNLHEYIEVVFQNNEKT-MQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDN- 354 (406)
Q Consensus 277 ~~~~~v~~g~~v~ivl~N~~~~-~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adn- 354 (406)
..++.++.|++++|.|.|.+.. .+.||+.||+|+|++.++. ...|...|++.|.+|+.+.+.++++.
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~-----------~v~p~~~~~l~l~~G~R~dvlv~~~~~ 127 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGV-----------PVEPYKVDTLVLAPGQRYDVLVTADQP 127 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTE-----------EEEEEEESBEEE-TTEEEEEEEEECSC
T ss_pred cceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeeccc-----------cccccccceEEeeCCeEEEEEEEeCCC
Confidence 3568899999999999998764 7999999999999999742 22388899999999999999999987
Q ss_pred ceeeEEee----eehhhhhcccEEEEEE
Q 015447 355 QGMWNMRS----AIWERQYLGQQFYLKV 378 (406)
Q Consensus 355 pG~W~~HC----Hi~~H~~~GM~~~~~v 378 (406)
+|.|.++| +...+...|+.+.+..
T Consensus 128 ~g~y~i~~~~~~~~~~~~~~~~~~aiL~ 155 (159)
T PF00394_consen 128 PGNYWIRASYQHDSINDPQNGNALAILR 155 (159)
T ss_dssp SSEEEEEEEESSSSSHSHGGGTTEEEEE
T ss_pred CCeEEEEEecccCCCccCCCcEEEEEEE
Confidence 99999999 5566778888877654
No 37
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.31 E-value=7.9e-05 Score=76.69 Aligned_cols=228 Identities=18% Similarity=0.221 Sum_probs=139.1
Q ss_pred ceEEEcCCCCc-eEEEecCCEEEEEEEecCCCceEEEEEeCcE-EEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCC
Q 015447 59 DGVLINGQGHT-TFNGDQGKTYMFRISNVGLSTSFNFRIQGHT-MKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQP 136 (406)
Q Consensus 59 d~~liNG~~~~-~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~-~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~ 136 (406)
..++|||+--. .+.++.|+++.++++|-.. ..+.++.+|-. .+=--.||.++ ..=.|.|||.|-.-+++++.
T Consensus 48 ~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~~-----TqCPI~Pg~~~tY~F~v~~q 121 (563)
T KOG1263|consen 48 QVITINGQFPGPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVYI-----TQCPIQPGENFTYRFTVKDQ 121 (563)
T ss_pred eeEeecCCCCCCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCcc-----ccCCcCCCCeEEEEEEeCCc
Confidence 67899999755 4999999999999999954 67777777753 33345699554 44458899999999999866
Q ss_pred CceeEEEEEecccCCCcceEEEEEeeCCCCCCCCCCCCCCCCch-----hhhhh-hhhhcccccccCCCCCCCCCCCccC
Q 015447 137 PKDYYIVASTRFTKNVLTATAILHYTNSHSPASGPLPTGPTYEI-----HWSMK-QARTFRWNLTANAARPNPQGSFHYG 210 (406)
Q Consensus 137 ~g~y~ir~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~-----~~~~~-~~~~~~~~l~~~~~~p~p~~~~~~~ 210 (406)
.|+||-.++...-- .....+-|....... .+-|.+ .|..+. +|..+ ..+.+...+......|
T Consensus 122 ~GT~~yh~h~~~~R-a~G~~G~liI~~~~~-~p~pf~-~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p--------- 189 (563)
T KOG1263|consen 122 IGTLWYHSHVSWQR-ATGVFGALIINPRPG-LPVPFP-KPDKEFTILLGDWYKNLNHKNLKNFLDRTGALP--------- 189 (563)
T ss_pred ceeEEEeecccccc-ccCceeEEEEcCCcc-CCCCCC-CCCceeEEEeEeeccccCHHHHHHhhccCCCCC---------
Confidence 89999987764311 011233333221110 001111 121111 01000 0000000000000000
Q ss_pred cccceEEEEEeccccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEE
Q 015447 211 KINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEV 290 (406)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~i 290 (406)
.......|||... ..+.|...+.++.|+++.|
T Consensus 190 -----------------~~~D~~~iNg~~g-------------------------------~~~~~~~~l~v~pGktY~l 221 (563)
T KOG1263|consen 190 -----------------NPSDGVLINGRSG-------------------------------FLYNCTPTLTVEPGKTYRL 221 (563)
T ss_pred -----------------CCCCceEECCCCC-------------------------------cccCceeEEEEcCCCEEEE
Confidence 0011234555431 1122466788999999999
Q ss_pred EEEcCCCC--CCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEec-Cce-eeEEeeee
Q 015447 291 VFQNNEKT--MQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLD-NQG-MWNMRSAI 364 (406)
Q Consensus 291 vl~N~~~~--~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ad-npG-~W~~HCHi 364 (406)
+|.|.+.. .+ |.+-||.+.|++.+ |. ...|..-|++.|-+|+...+...|| .|+ .|+-=|=.
T Consensus 222 RiiN~g~~~~l~-F~I~~H~ltvVe~D-g~----------y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~ 287 (563)
T KOG1263|consen 222 RIINAGLNTSLN-FSIANHQLTVVEVD-GA----------YTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPY 287 (563)
T ss_pred EEEccccccceE-EEECCeEEEEEEec-ce----------EEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEee
Confidence 99998743 34 99999999999998 33 2347778999999999999999997 455 56665554
No 38
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.27 E-value=5.1e-06 Score=70.95 Aligned_cols=88 Identities=9% Similarity=0.007 Sum_probs=58.0
Q ss_pred EEEeecCCcEEEEEEEcCCC-CCCceeecCCCe--EEEeeccCCCCccccccCCCCCCCccceEEeCC---C--CEEEEE
Q 015447 278 SVMQVNLHEYIEVVFQNNEK-TMQSWHLDGYDF--WVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYP---Q--SWTVIL 349 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~-~~HP~HlHG~~F--~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~---~--g~~~ir 349 (406)
..+.++.|+.|++++.|.+. ..|.|-||.+.- .....-.|. +..-..-.+|+ + ++..+.
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~-------------~~~~~~~i~p~~~~g~~~~~~~t 118 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGL-------------GFVAGTGFLPPPKSGKFGYTDFT 118 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCC-------------CccccCcccCCCCCCccceeEEE
Confidence 34788999999999999875 567666653321 100000010 11111222232 2 246788
Q ss_pred EEecCceeeEEeeeehhhhhcccEEEEEE
Q 015447 350 VSLDNQGMWNMRSAIWERQYLGQQFYLKV 378 (406)
Q Consensus 350 f~adnpG~W~~HCHi~~H~~~GM~~~~~v 378 (406)
|+++.+|.+.||||+..|...||...+.|
T Consensus 119 f~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 119 YHFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred EECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 88889999999999999999999998876
No 39
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.17 E-value=2.1e-05 Score=66.40 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=67.7
Q ss_pred eEEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCccc-----------ceeEeeEEEEcCCCeEEEEEEeCCCCc
Q 015447 70 TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHT-----------IQNIYDSLDVHVGQSVSVLVTLNQPPK 138 (406)
Q Consensus 70 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-----------~P~~~~~i~l~~GeR~dv~v~~~~~~g 138 (406)
.+.++.|+.++|+|+|.+.. .+.|+++||.|+|++.++... .|...+++.|.+|++..+.++++ .+|
T Consensus 35 ~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~-~~G 112 (138)
T PF07731_consen 35 VIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD-NPG 112 (138)
T ss_dssp EEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-STE
T ss_pred eEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-cce
Confidence 39999999999999997776 999999999999999999874 57789999999999999999998 579
Q ss_pred eeEEEEEec
Q 015447 139 DYYIVASTR 147 (406)
Q Consensus 139 ~y~ir~~~~ 147 (406)
.|-+.....
T Consensus 113 ~w~~HCHi~ 121 (138)
T PF07731_consen 113 PWLFHCHIL 121 (138)
T ss_dssp EEEEEESSH
T ss_pred EEEEEEchH
Confidence 888877643
No 40
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.90 E-value=6.2e-05 Score=59.82 Aligned_cols=82 Identities=16% Similarity=0.096 Sum_probs=58.2
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
..+.++.|++|+|+ |.+...|-+.++.-.+..-.. ........+++.+.||+...+.|.+ ||.
T Consensus 17 ~~i~v~~G~~V~~~--N~~~~~H~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~pG~t~~~tF~~--~G~ 79 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNKGGPHNVVFDEDAVPAGVK-------------ELAKSLSHKDLLNSPGESYEVTFST--PGT 79 (99)
T ss_pred CEEEECCCCEEEEE--ECCCCCceEEECCCCCccchh-------------hhcccccccccccCCCCEEEEEeCC--CEE
Confidence 45789999998876 777778877765432211100 0001123467788999998887776 999
Q ss_pred eEEeeeehhhhhcccEEEEEE
Q 015447 358 WNMRSAIWERQYLGQQFYLKV 378 (406)
Q Consensus 358 W~~HCHi~~H~~~GM~~~~~v 378 (406)
|.|||- .|..+||...+.|
T Consensus 80 y~y~C~--~H~~aGM~G~I~V 98 (99)
T TIGR02656 80 YTFYCE--PHRGAGMVGKITV 98 (99)
T ss_pred EEEEcC--CccccCCEEEEEE
Confidence 999998 4999999999876
No 41
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.66 E-value=0.00021 Score=59.31 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=49.9
Q ss_pred EEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceee
Q 015447 279 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 358 (406)
Q Consensus 279 ~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W 358 (406)
.+.++.|+.|+|++.|.+...|.+-++++. -...+++|+...|+|.++-||.+
T Consensus 62 ~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~g---------------------------is~~I~pGet~TitF~adKpG~Y 114 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKSPISEGFSIDAYG---------------------------ISEVIKAGETKTISFKADKAGAF 114 (135)
T ss_pred EEEECCCCEEEEEEEeCCCCccceEECCCC---------------------------cceEECCCCeEEEEEECCCCEEE
Confidence 478999999999999999888776666542 13467889999999999999999
Q ss_pred EEeeee
Q 015447 359 NMRSAI 364 (406)
Q Consensus 359 ~~HCHi 364 (406)
.|||-+
T Consensus 115 ~y~C~~ 120 (135)
T TIGR03096 115 TIWCQL 120 (135)
T ss_pred EEeCCC
Confidence 999988
No 42
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.25 E-value=0.02 Score=58.29 Aligned_cols=220 Identities=15% Similarity=0.087 Sum_probs=126.3
Q ss_pred ceEEEcCCCC-ceEEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCC
Q 015447 59 DGVLINGQGH-TTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP 137 (406)
Q Consensus 59 d~~liNG~~~-~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~ 137 (406)
....+||..- +.+.+++|++++++++|.-... -.++.+|-..- -+.||.. ....+.+.+|+.|+.-++.+++.
T Consensus 53 ~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~-t~vh~HG~~~p-~~~dG~~----~~~~~~~~~~~~~~y~f~~~~~g 126 (451)
T COG2132 53 TVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVD-TSVHWHGLPVP-GEMDGVP----PLTQIPPGPGETPTYTFTQDVPG 126 (451)
T ss_pred eeEEecccccCceEEEecCCEEEEEEEeCCCCC-ceEEEcCcccC-ccccCCC----cccccCCCCCCcEEEeecCCCCc
Confidence 4567777433 4599999999999999995553 44556663222 4788852 24566788999999999887654
Q ss_pred ceeEEEEEecccCCC-cceEEEEEeeCCCCCCCCCCCCCCCCchhhhhhhhhhcccccccCCCCCCCCCCCccCcccceE
Q 015447 138 KDYYIVASTRFTKNV-LTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTR 216 (406)
Q Consensus 138 g~y~ir~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~ 216 (406)
+||.+..... |. ....+.+....... .| +..+-...+- .+.. +.... .... ..
T Consensus 127 -T~wyh~H~~~--Q~~~Gl~G~~II~~~~~-----~~--~~~d~~~~i~--~~~~--~~~~~--~~~~---------~~- 180 (451)
T COG2132 127 -TYWYHPHTHG--QVYDGLAGALIIEDENS-----EP--LGVDDEPVIL--QDDW--LDEDG--TDLY---------QE- 180 (451)
T ss_pred -ceEeccCCCc--hhhcccceeEEEeCCCC-----CC--CCCCceEEEE--Eeee--ecCCC--Cccc---------cC-
Confidence 9999876542 21 11222222222210 00 0000000000 0000 00000 0000 00
Q ss_pred EEEEeccccccCCeEeEEEcCccccCCCCchhcccccCCCcccccCCCCCCCCCCCCcceeEEEeecCCcEEEEEEEcCC
Q 015447 217 TIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNE 296 (406)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~g~~v~ivl~N~~ 296 (406)
... + .......-.+||..+ .+....+.++++.|.|.+
T Consensus 181 ---~~~-~-~~~~g~~~~vnG~~~--------------------------------------p~~~~~~g~~rlRl~n~~ 217 (451)
T COG2132 181 ---GPA-M-GGFPGDTLLVNGAIL--------------------------------------PFKAVPGGVVRLRLLNAG 217 (451)
T ss_pred ---Ccc-c-cCCCCCeEEECCCcc--------------------------------------ceeecCCCeEEEEEEecC
Confidence 000 0 000001123344211 122234566999999998
Q ss_pred -CCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceeeEEeeee
Q 015447 297 -KTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAI 364 (406)
Q Consensus 297 -~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W~~HCHi 364 (406)
....=.++.|+.|+|+..+++. ..+...|.+.+-+++...+...+.+.|.+.+.|.-
T Consensus 218 ~~~~~~~~~~~~~~~Vi~~DG~~-----------v~~~~~d~~~l~p~er~~v~v~~~~~~~~~l~~~~ 275 (451)
T COG2132 218 NARTYHLALGGGPLTVIAVDGGP-----------LPPVSVDELYLAPGERYEVLVDMNDGGAVTLTALG 275 (451)
T ss_pred CceEEEEEecCceEEEEEeCCcC-----------cCceeeeeEEecCcceEEEEEEcCCCCeEEEEecc
Confidence 5556667779999999998652 22357799999999999999999889999999987
No 43
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=97.22 E-value=0.0013 Score=52.72 Aligned_cols=63 Identities=13% Similarity=0.223 Sum_probs=43.2
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
..+.++.|+.|.|++.|.+...|-+.+-+ .. -...+++|+...+.|.++.||.
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~--------------------------~~-~~~~l~~g~~~~~~f~~~~~G~ 87 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPD--------------------------LG-ISKVLPPGETATVTFTPLKPGE 87 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGG--------------------------GT-EEEEE-TT-EEEEEEEE-S-EE
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECC--------------------------Cc-eEEEECCCCEEEEEEcCCCCEE
Confidence 35789999999999999988866555444 11 2267889999999999999999
Q ss_pred eEEeeeehhhhh
Q 015447 358 WNMRSAIWERQY 369 (406)
Q Consensus 358 W~~HCHi~~H~~ 369 (406)
+-|||-+ |..
T Consensus 88 y~~~C~~--~~~ 97 (104)
T PF13473_consen 88 YEFYCTM--HPN 97 (104)
T ss_dssp EEEB-SS--S-T
T ss_pred EEEEcCC--CCc
Confidence 9999998 554
No 44
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=97.09 E-value=0.00062 Score=55.83 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=64.8
Q ss_pred CceEEEcCCCCce-EEEecCCEEEEEEEecCCCceEEEEEeCcEEEEE-EeCCcccceeEeeEEEEcCCCeEEEEEEeCC
Q 015447 58 PDGVLINGQGHTT-FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLV-EVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQ 135 (406)
Q Consensus 58 ~d~~liNG~~~~~-~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~ 135 (406)
...+++||+.-.+ |.++.|+++++++.|.... ...++.+|-.+.-- ..||.+-.+ .-.|.||+++..-+++++
T Consensus 14 ~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~-~~siH~HG~~~~~~~~~DG~~~~~----~~~i~pG~~~~Y~~~~~~ 88 (117)
T PF07732_consen 14 RKVWTYNGQFPGPTIRVREGDTVRITVTNNLDE-PTSIHWHGLHQPPSPWMDGVPGVT----QCPIAPGESFTYEFTANQ 88 (117)
T ss_dssp EEEEEETTBSSEEEEEEETTEEEEEEEEEESSS-GBSEEEETSBSTTGGGGSGGTTTS----GSSBSTTEEEEEEEEESS
T ss_pred EEEEEECCCCCCCEEEEEcCCeeEEEEEecccc-ccccccceeeeeeeeecCCccccc----ceeEEeecceeeeEeeec
Confidence 4678999997654 9999999999999999844 67788887542110 267765322 234889999999999998
Q ss_pred CCceeEEEEEec
Q 015447 136 PPKDYYIVASTR 147 (406)
Q Consensus 136 ~~g~y~ir~~~~ 147 (406)
.+|.||......
T Consensus 89 ~~Gt~wYH~H~~ 100 (117)
T PF07732_consen 89 QAGTYWYHSHVH 100 (117)
T ss_dssp CSEEEEEEECST
T ss_pred cccceeEeeCCC
Confidence 789999987654
No 45
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.70 E-value=0.018 Score=45.64 Aligned_cols=83 Identities=11% Similarity=0.018 Sum_probs=54.3
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
..+.++.|++|.|+.. +.+.|.+++ .. + .+..... .+ ..+..-.+..+.+|+...+.|. .||.
T Consensus 17 ~~i~V~~G~tV~~~n~--~~~~Hnv~~-------~~-~--~~~~~~~--~~-~~~~~~~~~~~~~G~~~~~tF~--~~G~ 79 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNN--DSMPHNVVF-------VA-D--GMPAGAD--SD-YVPPGDSSPLLAPGETYSVTFT--KPGT 79 (99)
T ss_dssp SEEEEETTEEEEEEEE--SSSSBEEEE-------ET-T--SSHTTGG--HC-HHSTTCEEEEBSTTEEEEEEEE--SSEE
T ss_pred CEEEECCCCEEEEEEC--CCCCceEEE-------ec-c--ccccccc--cc-ccCccccceecCCCCEEEEEeC--CCeE
Confidence 4578999999987755 556666443 22 1 1100000 00 0011115667888888888877 8999
Q ss_pred eEEeeeehhhhhcccEEEEEEe
Q 015447 358 WNMRSAIWERQYLGQQFYLKVW 379 (406)
Q Consensus 358 W~~HCHi~~H~~~GM~~~~~v~ 379 (406)
+.|+|- - |..+||-..+.|.
T Consensus 80 y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 80 YEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEET-T-TGGTTSEEEEEEE
T ss_pred EEEEcC-C-CcccCCEEEEEEC
Confidence 999999 4 9999999998873
No 46
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.63 E-value=0.0095 Score=61.66 Aligned_cols=76 Identities=13% Similarity=0.192 Sum_probs=56.4
Q ss_pred eEEEeecCCcEEEEEEEcCC---CCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEec
Q 015447 277 TSVMQVNLHEYIEVVFQNNE---KTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLD 353 (406)
Q Consensus 277 ~~~~~v~~g~~v~ivl~N~~---~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ad 353 (406)
...+.++.|+.|.|.|.|.+ +..|-|-+-++.. -+.+.||....+.|+++
T Consensus 554 p~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI---------------------------~~dv~PG~t~svtF~ad 606 (635)
T PRK02888 554 LREFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV---------------------------NMEVAPQATASVTFTAD 606 (635)
T ss_pred CceEEecCCCEEEEEEEeCCcccccccceeecccCc---------------------------cEEEcCCceEEEEEEcC
Confidence 34577899999999999974 4566666533321 12566889999999999
Q ss_pred CceeeEEeeeehhhh-hcccEEEEEEe
Q 015447 354 NQGMWNMRSAIWERQ-YLGQQFYLKVW 379 (406)
Q Consensus 354 npG~W~~HCHi~~H~-~~GM~~~~~v~ 379 (406)
.||.|.+||...-|. |.+|...+.|.
T Consensus 607 kPGvy~~~CtefCGa~H~~M~G~~iVe 633 (635)
T PRK02888 607 KPGVYWYYCTWFCHALHMEMRGRMLVE 633 (635)
T ss_pred CCEEEEEECCcccccCcccceEEEEEE
Confidence 999999999884433 56888887774
No 47
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=96.62 E-value=0.0092 Score=50.97 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=58.2
Q ss_pred CCCceEEEcCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCcE--EEE-EEeCCcccceeEeeEEEEcCCCe--EEEE
Q 015447 56 PFPDGVLINGQGHTTFNGDQGKTYMFRISNVGLSTSFNFRIQGHT--MKL-VEVEGSHTIQNIYDSLDVHVGQS--VSVL 130 (406)
Q Consensus 56 ~~~d~~liNG~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~--~~v-ia~DG~~~~P~~~~~i~l~~GeR--~dv~ 130 (406)
+...++.+||...+.+.+++|+++++++.|......+.|.|..+. +.. -..||....+...-.-...+|+. .++.
T Consensus 39 ~~~~~f~~~~~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~t 118 (148)
T TIGR03095 39 PSMYSFEIHDLKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFT 118 (148)
T ss_pred CCceeEEecCCCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEE
Confidence 456899999999999999999999999999976445666665442 111 13566532111100001123544 4888
Q ss_pred EEeCCCCceeEEEEE
Q 015447 131 VTLNQPPKDYYIVAS 145 (406)
Q Consensus 131 v~~~~~~g~y~ir~~ 145 (406)
+++++ +|.||....
T Consensus 119 f~f~~-aGtywyhC~ 132 (148)
T TIGR03095 119 YHFST-AGTYWYLCT 132 (148)
T ss_pred EECCC-CeEEEEEcC
Confidence 88875 799999854
No 48
>PRK02710 plastocyanin; Provisional
Probab=96.47 E-value=0.017 Score=47.45 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=50.4
Q ss_pred EEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceee
Q 015447 279 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 358 (406)
Q Consensus 279 ~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W 358 (406)
.+.++.|++|+|+ |.+...|-+.+.+.. .+ ..++ ..+.+|+...+.|.. ||.+
T Consensus 48 ~i~v~~Gd~V~~~--N~~~~~H~v~~~~~~---------~~-------------~~~~-~~~~pg~t~~~tF~~--~G~y 100 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNKLAPHNAVFDGAK---------EL-------------SHKD-LAFAPGESWEETFSE--AGTY 100 (119)
T ss_pred EEEEcCCCEEEEE--ECCCCCceEEecCCc---------cc-------------cccc-cccCCCCEEEEEecC--CEEE
Confidence 3678999998875 767778877654211 00 0112 346778887777765 9999
Q ss_pred EEeeeehhhhhcccEEEEEE
Q 015447 359 NMRSAIWERQYLGQQFYLKV 378 (406)
Q Consensus 359 ~~HCHi~~H~~~GM~~~~~v 378 (406)
.|+|=. |..+||-..+.|
T Consensus 101 ~y~C~~--H~~~gM~G~I~V 118 (119)
T PRK02710 101 TYYCEP--HRGAGMVGKITV 118 (119)
T ss_pred EEEcCC--CccCCcEEEEEE
Confidence 999984 999999998877
No 49
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=96.43 E-value=0.014 Score=48.65 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=53.2
Q ss_pred EEcCCCCce-EEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCcee
Q 015447 62 LINGQGHTT-FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDY 140 (406)
Q Consensus 62 liNG~~~~~-~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y 140 (406)
-.||.-.|. +.|++|++++|++.|.+. +.+.+.++++. -...|.+||+..+-+++++ +|.|
T Consensus 53 a~n~~~~P~~I~VkaGD~Vtl~vtN~d~-~~H~f~i~~~g----------------is~~I~pGet~TitF~adK-pG~Y 114 (135)
T TIGR03096 53 AFNVLNEPEALVVKKGTPVKVTVENKSP-ISEGFSIDAYG----------------ISEVIKAGETKTISFKADK-AGAF 114 (135)
T ss_pred eeeeEEcCCEEEECCCCEEEEEEEeCCC-CccceEECCCC----------------cceEECCCCeEEEEEECCC-CEEE
Confidence 557776765 999999999999999987 46777777652 1567899999999999986 7999
Q ss_pred EEEEE
Q 015447 141 YIVAS 145 (406)
Q Consensus 141 ~ir~~ 145 (406)
+....
T Consensus 115 ~y~C~ 119 (135)
T TIGR03096 115 TIWCQ 119 (135)
T ss_pred EEeCC
Confidence 98653
No 50
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=96.23 E-value=0.028 Score=45.87 Aligned_cols=77 Identities=8% Similarity=0.047 Sum_probs=48.9
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
..+.++.|++|.|+..|. .| . |.......... -+.+...+++...+.| +.||.
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~H-------n--v~~~~~~~p~g-------------~~~~~s~~g~~~~~tF--~~~G~ 67 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GH-------N--VETIKGMIPEG-------------AEAFKSKINEEYTVTV--TEEGV 67 (116)
T ss_pred CEEEECCCCEEEEEECCC---Ce-------e--EEEccCCCcCC-------------cccccCCCCCEEEEEe--CCCEE
Confidence 457899999999998874 23 1 22211000000 0011113455555444 78999
Q ss_pred eEEeeeehhhhhcccEEEEEEecccc
Q 015447 358 WNMRSAIWERQYLGQQFYLKVWNAVH 383 (406)
Q Consensus 358 W~~HCHi~~H~~~GM~~~~~v~~~~~ 383 (406)
+-|+|=. |..+||-..++|.++..
T Consensus 68 Y~Y~C~p--H~~~GM~G~V~Vg~~~~ 91 (116)
T TIGR02375 68 YGVKCTP--HYGMGMVALIQVGDPPA 91 (116)
T ss_pred EEEEcCC--CccCCCEEEEEECCCCc
Confidence 9999996 99999999999987633
No 51
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=94.48 E-value=0.25 Score=37.60 Aligned_cols=71 Identities=10% Similarity=0.080 Sum_probs=45.1
Q ss_pred EEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceee
Q 015447 279 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 358 (406)
Q Consensus 279 ~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W 358 (406)
.+.++.|++|.| .|.+...|-.+.+.-.+ +.. .+. ...+.++.... |.++.||.+
T Consensus 12 ~i~v~~GdtVt~--~N~d~~~Hnv~~~~g~~-------~~~-------------~~~-~~~~~~g~~~~--~tf~~~G~y 66 (83)
T TIGR02657 12 ELHVKVGDTVTW--INREAMPHNVHFVAGVL-------GEA-------------ALK-GPMMKKEQAYS--LTFTEAGTY 66 (83)
T ss_pred EEEECCCCEEEE--EECCCCCccEEecCCCC-------ccc-------------ccc-ccccCCCCEEE--EECCCCEEE
Confidence 478899999887 57777888877653211 100 011 11234555444 455789999
Q ss_pred EEeeeehhhhhcccEEEEEE
Q 015447 359 NMRSAIWERQYLGQQFYLKV 378 (406)
Q Consensus 359 ~~HCHi~~H~~~GM~~~~~v 378 (406)
.|||=+ |- .|-..+.|
T Consensus 67 ~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 67 DYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred EEEcCC--CC--CCeEEEEE
Confidence 999998 65 47777665
No 52
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=94.07 E-value=0.5 Score=38.43 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=47.2
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
..+.|+.|++|.|+-++ +...|-. .+.+.+.|+. ......+++...+.| +.||.
T Consensus 42 ~~ltV~~GdTVtw~~~~-d~~~HnV---------~s~~~~~f~s--------------~~~~~~~G~t~s~Tf--~~~G~ 95 (115)
T TIGR03102 42 PAIRVDPGTTVVWEWTG-EGGGHNV---------VSDGDGDLDE--------------SERVSEEGTTYEHTF--EEPGI 95 (115)
T ss_pred CEEEECCCCEEEEEECC-CCCCEEE---------EECCCCCccc--------------cccccCCCCEEEEEe--cCCcE
Confidence 34788999999987443 2334432 2333233321 111234566655555 78999
Q ss_pred eEEeeeehhhhhcccEEEEEE
Q 015447 358 WNMRSAIWERQYLGQQFYLKV 378 (406)
Q Consensus 358 W~~HCHi~~H~~~GM~~~~~v 378 (406)
+.|+|=. |..+||-..++|
T Consensus 96 Y~Y~C~p--H~~~gM~G~I~V 114 (115)
T TIGR03102 96 YLYVCVP--HEALGMKGAVVV 114 (115)
T ss_pred EEEEccC--CCCCCCEEEEEE
Confidence 9999997 999999999887
No 53
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.06 E-value=0.29 Score=38.89 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=41.9
Q ss_pred CCCCce-EEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEE
Q 015447 65 GQGHTT-FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIV 143 (406)
Q Consensus 65 G~~~~~-~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir 143 (406)
++-.|. +.+++|+.++|.+.|.+... +.|.+++. -....|.+|+...+.+... .+|.|.+.
T Consensus 30 ~~f~P~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~~----------------~~~~~l~~g~~~~~~f~~~-~~G~y~~~ 91 (104)
T PF13473_consen 30 FGFSPSTITVKAGQPVTLTFTNNDSRP-HEFVIPDL----------------GISKVLPPGETATVTFTPL-KPGEYEFY 91 (104)
T ss_dssp EEEES-EEEEETTCEEEEEEEE-SSS--EEEEEGGG----------------TEEEEE-TT-EEEEEEEE--S-EEEEEB
T ss_pred CeEecCEEEEcCCCeEEEEEEECCCCc-EEEEECCC----------------ceEEEECCCCEEEEEEcCC-CCEEEEEE
Confidence 333443 99999999999999998773 66666661 1236789999999999766 47999886
Q ss_pred EE
Q 015447 144 AS 145 (406)
Q Consensus 144 ~~ 145 (406)
..
T Consensus 92 C~ 93 (104)
T PF13473_consen 92 CT 93 (104)
T ss_dssp -S
T ss_pred cC
Confidence 53
No 54
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=93.77 E-value=0.33 Score=43.67 Aligned_cols=78 Identities=14% Similarity=0.154 Sum_probs=56.8
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|+.|++.+.+.|-. |.|+|-+-+ ..+| .-||....+.|.++.||.
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV~--------Hsf~ip~~~-----------------~k~d---a~PG~~~~~~~~~~~~G~ 168 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDVI--------HSFWVPELG-----------------GKID---AIPGQYNALWFNADEPGV 168 (201)
T ss_pred CEEEEEcCCEEEEEEEeCchh--------hcccccccC-----------------ceEE---ecCCcEEEEEEEeCCCEE
Confidence 457899999999999997654 345553322 1233 446788889999999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEecccc
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVWNAVH 383 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~~~~~ 383 (406)
+...|--.-.. |..|...++|..+++
T Consensus 169 y~~~c~e~cG~~h~~M~~~v~v~~~~~ 195 (201)
T TIGR02866 169 YYGYCAELCGAGHSLMLFKVVVVEREE 195 (201)
T ss_pred EEEEehhhCCcCccCCeEEEEEECHHH
Confidence 99999984433 578888888876543
No 55
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.41 E-value=0.25 Score=41.85 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=65.5
Q ss_pred EeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceeeE
Q 015447 280 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWN 359 (406)
Q Consensus 280 ~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W~ 359 (406)
+.++.|++++.++.|.....|=|=+= ++.... +.+..... ..-..---..++.+.||....|-+.+.++|.+-
T Consensus 65 ~~v~aG~tv~~v~~n~~el~hef~~~---~~~~~~--~~~~~~~~--~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye 137 (158)
T COG4454 65 FEVKAGETVRFVLKNEGELKHEFTMD---APDKNL--EHVTHMIL--ADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYE 137 (158)
T ss_pred ccccCCcEEeeeecCcccceEEEecc---Cccccc--hhHHHhhh--CCccccCCcceeEeCCCCcEEEEEEecCCccEE
Confidence 46789999999999998877765444 111111 11100000 000011235789999999999999999999999
Q ss_pred EeeeehhhhhcccEEEEEEe
Q 015447 360 MRSAIWERQYLGQQFYLKVW 379 (406)
Q Consensus 360 ~HCHi~~H~~~GM~~~~~v~ 379 (406)
|-|-|-.|-+.||-..++|.
T Consensus 138 ~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 138 FACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred EEecCCCcccCCcEEEEEeC
Confidence 99999999999999988873
No 56
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=92.76 E-value=1.4 Score=36.19 Aligned_cols=73 Identities=8% Similarity=0.073 Sum_probs=50.5
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|+.|++.+.+.| ..|-|.+-+... . +.+-||....+.|.++.||.
T Consensus 46 ~~l~lp~g~~v~~~ltS~D-ViHsf~ip~~~~------------------------k---~d~~PG~~~~~~~~~~~~G~ 97 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSED-VIHSFWIPELGI------------------------K---MDAIPGRTNSVTFTPDKPGT 97 (120)
T ss_dssp SEEEEETTSEEEEEEEESS-S-EEEEETTCTE------------------------E---EEEBTTCEEEEEEEESSSEE
T ss_pred ceecccccceEeEEEEcCC-ccccccccccCc------------------------c---cccccccceeeeeeeccCCc
Confidence 4578999999999999964 455555443221 1 23457788889999999999
Q ss_pred eEEeeeehhh-hhcccEEEEEE
Q 015447 358 WNMRSAIWER-QYLGQQFYLKV 378 (406)
Q Consensus 358 W~~HCHi~~H-~~~GM~~~~~v 378 (406)
+-..|...-. -|..|...+.|
T Consensus 98 y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 98 YYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp EEEEE-SSSSTTGGG-EEEEEE
T ss_pred EEEcCccccCcCcCCCeEEEEE
Confidence 9999998553 35566666655
No 57
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=90.89 E-value=0.75 Score=40.74 Aligned_cols=85 Identities=20% Similarity=0.225 Sum_probs=55.7
Q ss_pred ceEEEcCCCCc--eEEEecCCEEEEEEEecCCCceEEEEEeCc-----EEEEEEeCCcccc-----eeEeeEEEEcCCCe
Q 015447 59 DGVLINGQGHT--TFNGDQGKTYMFRISNVGLSTSFNFRIQGH-----TMKLVEVEGSHTI-----QNIYDSLDVHVGQS 126 (406)
Q Consensus 59 d~~liNG~~~~--~~~v~~G~~~rlRliN~~~~~~~~~~i~gh-----~~~via~DG~~~~-----P~~~~~i~l~~GeR 126 (406)
+.+-+||.... .+.|..|-++.++++|.+.. .+.|-|-.- ..-.+..||.-+. +-....--|.+||+
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l-~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s 152 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESL-PHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQS 152 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCC-CeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCce
Confidence 47788998765 48999999999999999865 455544211 2345666665431 11111234679999
Q ss_pred EEEEEEeCCCCceeEEEEE
Q 015447 127 VSVLVTLNQPPKDYYIVAS 145 (406)
Q Consensus 127 ~dv~v~~~~~~g~y~ir~~ 145 (406)
+...+..- ++|.||+...
T Consensus 153 ~~~~~~~l-~aG~YwlvC~ 170 (196)
T PF06525_consen 153 ASGVYNDL-PAGYYWLVCG 170 (196)
T ss_pred eeEEEccC-CCceEEEEcc
Confidence 98776432 5899999754
No 58
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=90.47 E-value=1.2 Score=41.29 Aligned_cols=78 Identities=12% Similarity=0.161 Sum_probs=56.5
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|+.|++.+...|-+ |.|+|-+-+. .+| +-||-...+.+.++.||.
T Consensus 137 n~l~lPv~~~V~f~ltS~DVi--------HsF~IP~l~~-----------------k~d---~iPG~~~~~~~~~~~~G~ 188 (247)
T COG1622 137 NELVLPVGRPVRFKLTSADVI--------HSFWIPQLGG-----------------KID---AIPGMTTELWLTANKPGT 188 (247)
T ss_pred ceEEEeCCCeEEEEEEechhc--------eeEEecCCCc-----------------eee---ecCCceEEEEEecCCCeE
Confidence 457889999999999988655 5677755441 223 335677888899999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEecccc
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVWNAVH 383 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~~~~~ 383 (406)
+-.+|+..-.. |..|-..+.|..+++
T Consensus 189 Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 189 YRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred EEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 99999997644 455666676665543
No 59
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=89.16 E-value=2.4 Score=35.08 Aligned_cols=73 Identities=11% Similarity=0.001 Sum_probs=45.5
Q ss_pred EEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceee
Q 015447 279 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 358 (406)
Q Consensus 279 ~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W 358 (406)
.+.++.|++|+|+ |.+...|-.+ ..+.+. |..-+++..-.+.....-|. -||.+
T Consensus 55 ~v~v~pGDTVtw~--~~d~~~Hnv~---------~~~~~~-------------~~g~~~~~~~~~~s~~~Tfe--~~G~Y 108 (128)
T COG3794 55 EVTVKPGDTVTWV--NTDSVGHNVT---------AVGGMD-------------PEGSGTLKAGINESFTHTFE--TPGEY 108 (128)
T ss_pred EEEECCCCEEEEE--ECCCCCceEE---------EeCCCC-------------cccccccccCCCcceEEEec--ccceE
Confidence 3678999999986 5555555433 222111 11122222223344444454 49999
Q ss_pred EEeeeehhhhhcccEEEEEEe
Q 015447 359 NMRSAIWERQYLGQQFYLKVW 379 (406)
Q Consensus 359 ~~HCHi~~H~~~GM~~~~~v~ 379 (406)
.|.|=. |..+||-..+.|.
T Consensus 109 ~Y~C~P--H~~~gM~G~IvV~ 127 (128)
T COG3794 109 TYYCTP--HPGMGMKGKIVVG 127 (128)
T ss_pred EEEecc--CCCCCcEEEEEeC
Confidence 999999 9999999988875
No 60
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=89.03 E-value=2.1 Score=33.69 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=39.3
Q ss_pred EEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccce-eEeeEEEEcCCCeEEEEEEeCCCCceeEEEEE
Q 015447 71 FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQ-NIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAS 145 (406)
Q Consensus 71 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P-~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~ 145 (406)
+.|++|++++| +|.+.. .+.+.++...+-. +.....+ ...+.+.+.||+++++-++. +|.|.....
T Consensus 19 i~v~~G~~V~~--~N~~~~-~H~~~~~~~~~~~---~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~ 85 (99)
T TIGR02656 19 ISIAAGDTVEW--VNNKGG-PHNVVFDEDAVPA---GVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE 85 (99)
T ss_pred EEECCCCEEEE--EECCCC-CceEEECCCCCcc---chhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC
Confidence 89999998765 487543 4555543321100 0000111 12256789999999997663 689988754
No 61
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=88.04 E-value=7.5 Score=29.48 Aligned_cols=66 Identities=15% Similarity=0.294 Sum_probs=38.7
Q ss_pred EEEEEEEecCCCceEEEEEe-Cc--EEEEEEeCCcccc------e--eEeeEEEEcCCCeEEEEEEeCCC---CceeEEE
Q 015447 78 TYMFRISNVGLSTSFNFRIQ-GH--TMKLVEVEGSHTI------Q--NIYDSLDVHVGQSVSVLVTLNQP---PKDYYIV 143 (406)
Q Consensus 78 ~~rlRliN~~~~~~~~~~i~-gh--~~~via~DG~~~~------P--~~~~~i~l~~GeR~dv~v~~~~~---~g~y~ir 143 (406)
...|++.|.+.. .+.|.+. |+ ++.|...+|..|- . +......|.|||...+-.+.+.. +|.|.+.
T Consensus 3 ~~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 357888888865 6666664 44 4555556776652 1 23568899999999988888763 6899886
Q ss_pred E
Q 015447 144 A 144 (406)
Q Consensus 144 ~ 144 (406)
|
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 62
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=87.02 E-value=14 Score=29.92 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=14.9
Q ss_pred EEEEEecCCC-ceEEEEEeCcE
Q 015447 80 MFRISNVGLS-TSFNFRIQGHT 100 (406)
Q Consensus 80 rlRliN~~~~-~~~~~~i~gh~ 100 (406)
++|++|+++. ..+.+.++|-.
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 6888888775 56777776654
No 63
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=85.99 E-value=2.2 Score=39.10 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=57.4
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|+.|++.+...|-. |.|+|-+-+ ..+|.+ ||-...+.|.++.||.
T Consensus 139 nel~lP~g~pV~~~ltS~DVi--------HSF~VP~l~-----------------~K~Dai---PG~~n~~~~~~~~~G~ 190 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVM--------NSFFIPQLG-----------------SQIYAM---AGMQTKLHLIANEPGV 190 (226)
T ss_pred ceEEEECCCEEEEEEEECchh--------hhhhhhhcC-----------------CeeecC---CCceEEEEEEeCCCEE
Confidence 346889999999999988755 467775443 245644 5677788999999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEecccc
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVWNAVH 383 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~~~~~ 383 (406)
+.-.|--.-.. |..|...+.|..+++
T Consensus 191 y~g~CaE~CG~~Ha~M~~~V~v~~~~~ 217 (226)
T TIGR01433 191 YDGISANYSGPGFSGMKFKAIATDRAA 217 (226)
T ss_pred EEEEchhhcCcCccCCeEEEEEECHHH
Confidence 99999875544 567777777765543
No 64
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=82.70 E-value=2.9 Score=35.59 Aligned_cols=71 Identities=17% Similarity=0.322 Sum_probs=49.3
Q ss_pred EEEecCCEEEEEEEecCCCceEEEEEe--C----cEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEE
Q 015447 71 FNGDQGKTYMFRISNVGLSTSFNFRIQ--G----HTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVA 144 (406)
Q Consensus 71 ~~v~~G~~~rlRliN~~~~~~~~~~i~--g----h~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~ 144 (406)
+.++.|+++|+-+-|.+-. -+.|.++ + |.-..+.+| ..+--..+.+.|.||+.-.+++.+.+ +|.|.++.
T Consensus 65 ~~v~aG~tv~~v~~n~~el-~hef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft~-~g~ye~~C 140 (158)
T COG4454 65 FEVKAGETVRFVLKNEGEL-KHEFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFTG-AGKYEFAC 140 (158)
T ss_pred ccccCCcEEeeeecCcccc-eEEEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEecC-CccEEEEe
Confidence 8999999999999998865 4445444 2 111122222 11123357899999999999999975 68899876
Q ss_pred E
Q 015447 145 S 145 (406)
Q Consensus 145 ~ 145 (406)
.
T Consensus 141 ~ 141 (158)
T COG4454 141 N 141 (158)
T ss_pred c
Confidence 4
No 65
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=81.55 E-value=7.6 Score=35.65 Aligned_cols=77 Identities=6% Similarity=0.001 Sum_probs=55.7
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|+.|++.+.+.|-. |.|+|-+-| ...| .-||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~ts~DVi--------Hsf~ip~~~-----------------~k~d---~~Pg~~~~~~~~~~~~g~ 191 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSADVI--------HSWTVPSLG-----------------VKVD---AIPGRLNQLSFEPKRPGV 191 (228)
T ss_pred CeEEEeeCcEEEEEEEcCccc--------cceeccccC-----------------ceeE---CCCCcceeEEEEeCCCEE
Confidence 457889999999999997654 456554333 1223 236677778889999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEeccc
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVWNAV 382 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~~~~ 382 (406)
+...|.-.-.. |..|-..++|..++
T Consensus 192 y~~~C~e~CG~~H~~M~~~v~v~~~~ 217 (228)
T MTH00140 192 FYGQCSEICGANHSFMPIVVEAVPLE 217 (228)
T ss_pred EEEECccccCcCcCCCeEEEEEECHH
Confidence 99999986654 66777777776553
No 66
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=81.46 E-value=19 Score=31.56 Aligned_cols=95 Identities=12% Similarity=-0.043 Sum_probs=57.2
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCC-Ccc---ccccCCC--CCCCccceEEeCCCCEEEEEEE
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQW-AAE---KRRTYNL--ADTLTRHTAQVYPQSWTVILVS 351 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~-~~~---~~~~~n~--~~p~~rDTv~vp~~g~~~irf~ 351 (406)
..+-++.|-.|.++|.|.+.+.| .+-|+..+...- .+. +....+. ..+.--..=-+.+|....+-|.
T Consensus 85 mtIyiPaGw~V~V~f~N~e~~pH-------nl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~ 157 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYESLPH-------NLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWN 157 (195)
T ss_pred eEEEEeCCCEEEEEEEcCCCCCc-------cEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEec
Confidence 34678999999999999987764 455555443110 000 0000000 0000000111224455556666
Q ss_pred ecCceeeEEeeeehhhhhcccEEEEEEe
Q 015447 352 LDNQGMWNMRSAIWERQYLGQQFYLKVW 379 (406)
Q Consensus 352 adnpG~W~~HCHi~~H~~~GM~~~~~v~ 379 (406)
+--||.+.+=|-+.-|..+||=..+.|.
T Consensus 158 ~~~~G~YwlvCgipGHAesGMw~~lIVS 185 (195)
T TIGR03094 158 DTSAGKYWLVCGITGHAESGMWAVVIVS 185 (195)
T ss_pred cCCCeeEEEEcccCChhhcCcEEEEEEe
Confidence 6799999999999999999998888775
No 67
>PRK02888 nitrous-oxide reductase; Validated
Probab=81.35 E-value=8 Score=40.65 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=43.0
Q ss_pred EEEecCCEEEEEEEecCC--CceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEE
Q 015447 71 FNGDQGKTYMFRISNVGL--STSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAS 145 (406)
Q Consensus 71 ~~v~~G~~~rlRliN~~~--~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~ 145 (406)
|.|+.|+.++|+|.|... .-.+-|+|.++.+ .+.+.||+...+-+++++ +|.||+...
T Consensus 557 i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------~~dv~PG~t~svtF~adk-PGvy~~~Ct 616 (635)
T PRK02888 557 FTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------NMEVAPQATASVTFTADK-PGVYWYYCT 616 (635)
T ss_pred EEecCCCEEEEEEEeCCcccccccceeecccCc----------------cEEEcCCceEEEEEEcCC-CEEEEEECC
Confidence 788888888888888633 3455566655542 246779999999999986 699998754
No 68
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=81.17 E-value=13 Score=33.21 Aligned_cols=76 Identities=9% Similarity=0.064 Sum_probs=55.6
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|+.|++.+...|-. |.|+|-+-+ ..+|.+ ||-...+.|.++.||.
T Consensus 116 ~~l~lp~g~~v~~~ltS~DVi--------Hsf~vp~l~-----------------~k~d~~---PG~~~~~~~~~~~~G~ 167 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSDVI--------HSFSVPDLN-----------------LKMDAI---PGRINHLFFCPDRHGV 167 (194)
T ss_pred ceEEEeCCCEEEeeeecCccc--------cceeccccC-----------------ceeecC---CCceEEEEEEcCCCEE
Confidence 347789999999999987644 355553332 234533 6777888999999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEecc
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVWNA 381 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~~~ 381 (406)
+-.-|.-.-.. |..|-..++|..+
T Consensus 168 y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 168 FVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred EEEEeehhhCcCcccCcEEEEEEcC
Confidence 99999986644 6678777777655
No 69
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=79.72 E-value=15 Score=32.62 Aligned_cols=95 Identities=13% Similarity=-0.012 Sum_probs=58.3
Q ss_pred EEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccc--c----ccCCCCCCCccceEEeCCCCEEEEEEEe
Q 015447 279 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEK--R----RTYNLADTLTRHTAQVYPQSWTVILVSL 352 (406)
Q Consensus 279 ~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~--~----~~~n~~~p~~rDTv~vp~~g~~~irf~a 352 (406)
.+.++.|-.|.+.+.|.+.+.| .|-|+..+........ . ..+-...+.--..--+++|.....-|..
T Consensus 87 ~i~VPAGw~V~i~f~N~~~l~H-------nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~ 159 (196)
T PF06525_consen 87 TIYVPAGWNVQITFTNQESLPH-------NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYND 159 (196)
T ss_pred EEEEcCCCEEEEEEEcCCCCCe-------eEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEcc
Confidence 4678999999999999987765 5666755432111000 0 0000000100000122345555555656
Q ss_pred cCceeeEEeeeehhhhhcccEEEEEEec
Q 015447 353 DNQGMWNMRSAIWERQYLGQQFYLKVWN 380 (406)
Q Consensus 353 dnpG~W~~HCHi~~H~~~GM~~~~~v~~ 380 (406)
-.||.+.+=|=+.-|...||=..|.|..
T Consensus 160 l~aG~YwlvC~ipGHA~sGMw~~LiVs~ 187 (196)
T PF06525_consen 160 LPAGYYWLVCGIPGHAESGMWGVLIVSS 187 (196)
T ss_pred CCCceEEEEccCCChhhcCCEEEEEEec
Confidence 6799999999999999999999998854
No 70
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=78.64 E-value=12 Score=32.22 Aligned_cols=76 Identities=9% Similarity=0.067 Sum_probs=51.8
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|..|++.+...+-. |. |+|-+.+ ...|.+ ||-...+.|.++.||.
T Consensus 73 n~LvLP~g~~Vr~~lTS~DVI-HS-------F~VP~lg-----------------vK~Dav---PGr~n~l~~~~~~~G~ 124 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATDVI-HS-------WSVPSLG-----------------IKADAI---PGRLHKINTFILREGV 124 (162)
T ss_pred CCEEEeCCCEEEEEEEeCccc-ee-------eeccccC-----------------ceeecc---CCceEEEEEecCCCeE
Confidence 346789999999999987655 44 4443332 233432 5666678888999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEecc
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVWNA 381 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~~~ 381 (406)
+...|.-+-.. |..|-..+.|..+
T Consensus 125 y~gqCsElCG~gHs~M~~~V~vvs~ 149 (162)
T PTZ00047 125 FYGQCSEMCGTLHGFMPIVVEAVSP 149 (162)
T ss_pred EEEEcchhcCcCccCceEEEEEeCH
Confidence 99999985533 4456666666544
No 71
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=78.45 E-value=8.1 Score=35.18 Aligned_cols=78 Identities=13% Similarity=0.225 Sum_probs=57.9
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|+.|++.+...|-. |.|+|=+-+ ..+|.+ ||-...+.|.++.||.
T Consensus 130 n~l~iP~g~~v~~~ltS~DVi--------Hsf~vP~l~-----------------~k~dai---PG~~~~~~~~~~~~G~ 181 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSADTM--------TSFWIPQLG-----------------GQKYAM---TGMTMNWYLQADQVGT 181 (217)
T ss_pred CcEEEECCCEEEEEEECCchh--------hhhhchhhC-----------------ceeecC---CCceEEEEEEeCCCEE
Confidence 346789999999999988754 467774333 245654 6777888999999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEecccc
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVWNAVH 383 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~~~~~ 383 (406)
+--.|=-.-.. |.-|...++|..+++
T Consensus 182 y~g~Cae~CG~~Hs~M~~~v~v~~~~~ 208 (217)
T TIGR01432 182 YRGRNANFNGEGFADQTFDVNAVSEKD 208 (217)
T ss_pred EEEEehhhcCccccCCeEEEEEeCHHH
Confidence 99999765433 567877777776644
No 72
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=75.13 E-value=11 Score=34.58 Aligned_cols=77 Identities=10% Similarity=0.037 Sum_probs=56.7
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|+.|++.++..|-. |.|+|-+-| ...|.+ ||....+-|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~~~-----------------~k~da~---PG~~~~~~~~~~~~G~ 191 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAEDVL--------HSWAVPALG-----------------VKMDAV---PGRLNQTAFIASRPGV 191 (230)
T ss_pred ceEEEecCcEEEEEEEeCccc--------cceeccccC-----------------CccccC---CCceEEEEEEeCCceE
Confidence 457889999999999988755 577776554 133432 6677778889999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEeccc
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVWNAV 382 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~~~~ 382 (406)
+-..|.-.-.. |..|-..++|..++
T Consensus 192 ~~g~C~e~CG~~H~~M~~~v~vv~~~ 217 (230)
T MTH00129 192 FYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEChhhccccccCCcEEEEEECHH
Confidence 99999875533 56777777776543
No 73
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=73.30 E-value=11 Score=29.36 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=39.7
Q ss_pred EEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcc--cce----eEeeEEEEcCCCeEEEEEEeCCCCceeEEEE
Q 015447 71 FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSH--TIQ----NIYDSLDVHVGQSVSVLVTLNQPPKDYYIVA 144 (406)
Q Consensus 71 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~--~~P----~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~ 144 (406)
+.|++|+++ +++|.+.. +|++.+.. |+.. .+. ..-....+.+|+.+++-++ .+|.|....
T Consensus 19 i~V~~G~tV--~~~n~~~~--------~Hnv~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C 84 (99)
T PF00127_consen 19 ITVKAGDTV--TFVNNDSM--------PHNVVFVA-DGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYC 84 (99)
T ss_dssp EEEETTEEE--EEEEESSS--------SBEEEEET-TSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEE
T ss_pred EEECCCCEE--EEEECCCC--------CceEEEec-ccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEc
Confidence 899999976 56775333 35555544 3321 111 1126778999999999888 468888876
Q ss_pred E
Q 015447 145 S 145 (406)
Q Consensus 145 ~ 145 (406)
.
T Consensus 85 ~ 85 (99)
T PF00127_consen 85 T 85 (99)
T ss_dssp T
T ss_pred C
Confidence 4
No 74
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=73.21 E-value=34 Score=25.27 Aligned_cols=65 Identities=20% Similarity=0.318 Sum_probs=30.5
Q ss_pred EecCCE--EEEEEEecCCCc--eEEEEEeCcEEEEEEeCCcc--cceeEeeEEEEcCCCeEEEEEEe--CC--CCceeEE
Q 015447 73 GDQGKT--YMFRISNVGLST--SFNFRIQGHTMKLVEVEGSH--TIQNIYDSLDVHVGQSVSVLVTL--NQ--PPKDYYI 142 (406)
Q Consensus 73 v~~G~~--~rlRliN~~~~~--~~~~~i~gh~~~via~DG~~--~~P~~~~~i~l~~GeR~dv~v~~--~~--~~g~y~i 142 (406)
|++|+. +++.+-|.+... .+.++++. =+|=. ..|..+. .|.+||...+-++. .. .+|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 356654 577888887542 34444432 23322 2333333 78999876665554 32 4689999
Q ss_pred EEEe
Q 015447 143 VAST 146 (406)
Q Consensus 143 r~~~ 146 (406)
.+..
T Consensus 72 ~~~a 75 (78)
T PF10633_consen 72 TVTA 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
No 75
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=73.05 E-value=14 Score=33.85 Aligned_cols=77 Identities=9% Similarity=0.061 Sum_probs=55.7
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|+.|++.+...|-. |.|+|-+-| ...|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDVL--------HSWAVPSLG-----------------LKTDAI---PGRLNQTTLMSTRPGL 191 (227)
T ss_pred ceEEecCCCEEEEEEEECccc--------ccccccccc-----------------cceecC---CCceEEEEEecCCcEE
Confidence 567889999999999988765 566664443 234433 5667778889999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEeccc
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVWNAV 382 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~~~~ 382 (406)
+..-|.-.-.. |.-|-..++|..++
T Consensus 192 ~~g~Cse~CG~~H~~M~~~v~v~~~~ 217 (227)
T MTH00098 192 YYGQCSEICGSNHSFMPIVLELVPLK 217 (227)
T ss_pred EEEECccccCcCcCCceEEEEEeCHH
Confidence 99999875544 56677777666543
No 76
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=71.86 E-value=16 Score=33.91 Aligned_cols=78 Identities=9% Similarity=0.067 Sum_probs=55.2
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|+.|++.++..|-. |.|+|=+-| ..+|.+ ||-...+.|.++.||.
T Consensus 151 n~lvlP~~~~v~~~~tS~DVi--------Hsf~iP~lg-----------------vK~Dai---PG~~n~~~~~~~~~G~ 202 (240)
T MTH00023 151 NRLVVPINTHVRILVTGADVL--------HSFAVPSLG-----------------LKIDAV---PGRLNQTGFFIKRPGV 202 (240)
T ss_pred ceEEEecCCEEEEEEEcCCcc--------cceeecccC-----------------ceeecC---CCcceeEEEEcCCCEE
Confidence 557899999999999987643 355554433 234533 4555677889999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEecccc
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVWNAVH 383 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~~~~~ 383 (406)
+.-.|.-.-.. |.-|-..++|..+++
T Consensus 203 y~g~C~e~CG~~Hs~M~~~v~vv~~~~ 229 (240)
T MTH00023 203 FYGQCSEICGANHSFMPIVIEAVSLDK 229 (240)
T ss_pred EEEEchhhcCcCccCCeEEEEEECHHH
Confidence 99999886544 566777777766543
No 77
>PRK02710 plastocyanin; Provisional
Probab=71.35 E-value=14 Score=30.06 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=37.3
Q ss_pred EEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEE
Q 015447 71 FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAS 145 (406)
Q Consensus 71 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~ 145 (406)
+.+++|++++| +|.+.. .+.+.+++. + ......+.+.+|+.+++.++. +|.|.....
T Consensus 49 i~v~~Gd~V~~--~N~~~~-~H~v~~~~~-------~-----~~~~~~~~~~pg~t~~~tF~~---~G~y~y~C~ 105 (119)
T PRK02710 49 LTIKAGDTVKW--VNNKLA-PHNAVFDGA-------K-----ELSHKDLAFAPGESWEETFSE---AGTYTYYCE 105 (119)
T ss_pred EEEcCCCEEEE--EECCCC-CceEEecCC-------c-----cccccccccCCCCEEEEEecC---CEEEEEEcC
Confidence 89999998655 576543 455554421 1 111234678999999987763 688877654
No 78
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=69.60 E-value=38 Score=26.13 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=40.9
Q ss_pred EEecCCEEEEEEE--ecCCCceEEEEEeCc--EEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCC--CCceeEEEEE
Q 015447 72 NGDQGKTYMFRIS--NVGLSTSFNFRIQGH--TMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQ--PPKDYYIVAS 145 (406)
Q Consensus 72 ~v~~G~~~rlRli--N~~~~~~~~~~i~gh--~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~--~~g~y~ir~~ 145 (406)
.-+||+++.+|++ +... . .-...+. .++|..-+|..+.-... ........++.-+.+++ ..|.|.|++.
T Consensus 10 iYrPGetV~~~~~~~~~~~-~--~~~~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~~~lp~~~~~G~y~i~~~ 84 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDN-D--FKPPANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGSFQLPDDAPLGTYTIRVK 84 (99)
T ss_dssp EE-TTSEEEEEEEEEEECT-T--CSCESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEEEE--SS---EEEEEEEE
T ss_pred CcCCCCEEEEEEEEecccc-c--cccccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEEEECCCCCCCEeEEEEEE
Confidence 3579999999999 6652 1 0112223 35666666766532222 13456777888888765 3589999987
Q ss_pred ec
Q 015447 146 TR 147 (406)
Q Consensus 146 ~~ 147 (406)
..
T Consensus 85 ~~ 86 (99)
T PF01835_consen 85 TD 86 (99)
T ss_dssp ET
T ss_pred Ec
Confidence 63
No 79
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=65.38 E-value=74 Score=25.91 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=42.4
Q ss_pred eEEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEEe
Q 015447 70 TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAST 146 (406)
Q Consensus 70 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~~ 146 (406)
.+.++.|+.++|++-+... .+.|+|.+..++ +.+-||+.-.+-+++++ +|.|+++...
T Consensus 47 ~l~lp~g~~v~~~ltS~DV--iHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~~-~G~y~~~C~e 104 (120)
T PF00116_consen 47 ELVLPAGQPVRFHLTSEDV--IHSFWIPELGIK----------------MDAIPGRTNSVTFTPDK-PGTYYGQCAE 104 (120)
T ss_dssp EEEEETTSEEEEEEEESSS---EEEEETTCTEE----------------EEEBTTCEEEEEEEESS-SEEEEEEE-S
T ss_pred eecccccceEeEEEEcCCc--cccccccccCcc----------------cccccccceeeeeeecc-CCcEEEcCcc
Confidence 4899999999999988654 466666655433 44567888888888875 7999998754
No 80
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=65.35 E-value=26 Score=32.09 Aligned_cols=78 Identities=6% Similarity=0.050 Sum_probs=55.9
Q ss_pred eEEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCce
Q 015447 277 TSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG 356 (406)
Q Consensus 277 ~~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG 356 (406)
.+.+.++.|+.|++.+...|-. |.|+|=+-| ..+|.+ ||-...+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~tS~DVi--------Hsf~vP~l~-----------------~K~Dai---PG~~n~~~~~~~~~G 190 (226)
T MTH00139 139 DNRLVLPYKSNIRALITAADVL--------HSWTVPSLG-----------------VKIDAV---PGRLNQVGFFINRPG 190 (226)
T ss_pred CceEEEecCCEEEEEEecCccc--------cceeccccC-----------------ccccCC---CCcEEEEEEEcCCCE
Confidence 3567899999999999987654 466665443 245644 566677888999999
Q ss_pred eeEEeeeehhhh-hcccEEEEEEeccc
Q 015447 357 MWNMRSAIWERQ-YLGQQFYLKVWNAV 382 (406)
Q Consensus 357 ~W~~HCHi~~H~-~~GM~~~~~v~~~~ 382 (406)
.+.--|--+-.. |.-|-..++|..++
T Consensus 191 ~y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (226)
T MTH00139 191 VFYGQCSEICGANHSFMPIVVEAISPK 217 (226)
T ss_pred EEEEEChhhcCcCcCCCeEEEEEeCHH
Confidence 999999875544 45666666666543
No 81
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=65.15 E-value=36 Score=27.98 Aligned_cols=76 Identities=16% Similarity=0.255 Sum_probs=47.2
Q ss_pred eEEEec-CCEEEEEEEecCCCc----eEEEEEe-CcEEEEEE-------eCCccccee----EeeEEEEcCCCeEEEEEE
Q 015447 70 TFNGDQ-GKTYMFRISNVGLST----SFNFRIQ-GHTMKLVE-------VEGSHTIQN----IYDSLDVHVGQSVSVLVT 132 (406)
Q Consensus 70 ~~~v~~-G~~~rlRliN~~~~~----~~~~~i~-gh~~~via-------~DG~~~~P~----~~~~i~l~~GeR~dv~v~ 132 (406)
.|.|++ ++.+.|.|-|.|... .+++-|- .-++.-|+ .|-+|+.+- -..+=.|++||..+|-++
T Consensus 17 ~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF~ 96 (125)
T TIGR02695 17 SISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTFD 96 (125)
T ss_pred EEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEEE
Confidence 488998 488999999998542 1222221 11223222 244556542 245667999999999999
Q ss_pred eCC--CCceeEEEEE
Q 015447 133 LNQ--PPKDYYIVAS 145 (406)
Q Consensus 133 ~~~--~~g~y~ir~~ 145 (406)
++. ++++|....+
T Consensus 97 ~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 97 VSKLSAGEDYTFFCS 111 (125)
T ss_pred CCCCCCCCcceEEEc
Confidence 864 3446877543
No 82
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=65.03 E-value=36 Score=31.27 Aligned_cols=77 Identities=10% Similarity=0.079 Sum_probs=54.5
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|+.|++.+++.|-. |.|+|-+-| ...|. -||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~vP~~~-----------------~k~da---iPG~~~~~~~~~~~~G~ 191 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAADVI--------HSWTVPSLG-----------------VKVDA---VPGRLNQIGFTITRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEeCCcc--------ccccccccC-----------------cceec---CCCceEEEEEEeCCCEE
Confidence 457889999999999997644 455554433 12343 26667778889999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEeccc
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVWNAV 382 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~~~~ 382 (406)
+..-|.-.-.. |.-|-..+++..++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (228)
T MTH00008 192 FYGQCSEICGANHSFMPIVLEAVDTK 217 (228)
T ss_pred EEEEChhhcCcCccCceeEEEEECHH
Confidence 99999875544 56677777766543
No 83
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=64.84 E-value=31 Score=31.65 Aligned_cols=77 Identities=6% Similarity=0.079 Sum_probs=54.9
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|+.|++.+...|-. |.|+|=+-| ..+|.+ ||-...+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~DVi--------Hsf~vp~l~-----------------~k~dav---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00154 140 NRLVLPMNTQIRILITAADVI--------HSWTVPSLG-----------------VKVDAV---PGRLNQLNFLINRPGL 191 (227)
T ss_pred ceEEEecCCEEEEEEEcCchh--------hheeccccC-----------------CeeecC---CCceEEEEEEEcCceE
Confidence 457889999999999988653 356654433 244543 5667778899999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEeccc
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVWNAV 382 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~~~~ 382 (406)
+.--|--.-.. |.-|-..+++..++
T Consensus 192 y~g~Cse~CG~~H~~M~~~v~vv~~~ 217 (227)
T MTH00154 192 FFGQCSEICGANHSFMPIVIESVSVN 217 (227)
T ss_pred EEEEeechhCcCccCCeEEEEEeCHH
Confidence 99999876544 55666666666543
No 84
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=64.45 E-value=26 Score=32.12 Aligned_cols=77 Identities=8% Similarity=0.035 Sum_probs=53.7
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|+.+++.++..|-. |.|+|=+-| ..+|.+ ||-...+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~iP~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 191 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSADVL--------HSWAVPSLG-----------------VKMDAV---PGRLNQTTFFISRTGL 191 (229)
T ss_pred ceEEEecCeEEEEEEEECCcc--------ccccccccC-----------------ceeecC---CCceEEEEEEcCCCEE
Confidence 557889999999999987644 355554333 234543 5666778889999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEeccc
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVWNAV 382 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~~~~ 382 (406)
+..-|--.-.. |.-|-..+.+..++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (229)
T MTH00038 192 FYGQCSEICGANHSFMPIVIESVPFN 217 (229)
T ss_pred EEEEcccccCcCcCCCeEEEEEeCHH
Confidence 99999876544 44566666665443
No 85
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=64.27 E-value=39 Score=31.08 Aligned_cols=77 Identities=10% Similarity=0.077 Sum_probs=55.1
Q ss_pred eEEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCce
Q 015447 277 TSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG 356 (406)
Q Consensus 277 ~~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG 356 (406)
.+.+.++.|+.|++.++..|-. |.|+|-+-| ...|.+ ||....+.|.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~iP~lg-----------------~k~dai---PG~~~~~~~~~~~~G 190 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAEDVL--------HSWTVPALG-----------------VKMDAV---PGRLNQATFIISRPG 190 (230)
T ss_pred CCeEEEecCCEEEEEEEcCccc--------ccccccccC-----------------ceeEec---CCceEEEEEEeCCcE
Confidence 3457789999999999988765 566665443 233432 566677788899999
Q ss_pred eeEEeeeehhhh-hcccEEEEEEecc
Q 015447 357 MWNMRSAIWERQ-YLGQQFYLKVWNA 381 (406)
Q Consensus 357 ~W~~HCHi~~H~-~~GM~~~~~v~~~ 381 (406)
.+.--|.-.-.. |.-|-..+++..+
T Consensus 191 ~~~g~Cse~CG~~Hs~M~~~v~vv~~ 216 (230)
T MTH00185 191 LYYGQCSEICGANHSFMPIVVEAVPL 216 (230)
T ss_pred EEEEEchhhcCcCcCCCeEEEEEECH
Confidence 999999886544 4567666666544
No 86
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=62.57 E-value=46 Score=23.92 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=35.9
Q ss_pred EEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEE
Q 015447 71 FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAS 145 (406)
Q Consensus 71 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~ 145 (406)
|.++.|+++++.+-+.+. +..+.|...+|..+....-.. -..|..--+.+.+. .+|.|.|++.
T Consensus 7 f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 7 FTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 788999998888866655 334677777765442211111 01122223334443 4789999864
No 87
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=61.00 E-value=29 Score=31.89 Aligned_cols=77 Identities=9% Similarity=0.041 Sum_probs=55.0
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|+.+++.+...|-. |.|+|=+-| ...|.+ ||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~DVi--------Hsf~vP~lg-----------------~k~da~---PG~~n~~~~~~~~~G~ 191 (228)
T MTH00076 140 NRMVVPMESPIRMLITAEDVL--------HSWAVPSLG-----------------IKTDAI---PGRLNQTSFIASRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEecccc--------ccccccccC-----------------ceEEcc---CCcceeEEEEeCCcEE
Confidence 567899999999999988755 566664443 233433 5666677889999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEeccc
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVWNAV 382 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~~~~ 382 (406)
+-.-|.-.-.. |..|-..+++..++
T Consensus 192 ~~g~C~e~CG~~Hs~M~~~v~vv~~~ 217 (228)
T MTH00076 192 YYGQCSEICGANHSFMPIVVEATPLN 217 (228)
T ss_pred EEEEChhhcCccccCCceEEEEeCHH
Confidence 99999875544 56677777666543
No 88
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=60.60 E-value=30 Score=24.73 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=28.5
Q ss_pred EEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEE
Q 015447 71 FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVS 128 (406)
Q Consensus 71 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~d 128 (406)
|.+.+|+..+||.-.. ..|.+.+-.++|.. +|. .+-+.|.+||++.
T Consensus 2 ~~L~~g~~~~lr~~~~-----~~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG-----QRLRVESGRVWLTR-EGD------PDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCCC-----cEEEEccccEEEEC-CCC------CCCEEECCCCEEE
Confidence 5678899999984332 33777777777754 442 2344555555553
No 89
>COG1470 Predicted membrane protein [Function unknown]
Probab=60.46 E-value=72 Score=32.32 Aligned_cols=85 Identities=24% Similarity=0.310 Sum_probs=54.6
Q ss_pred EEEecC--CEEEEEEEecCCC--ceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCe--EEEEEEeCC--CCceeEE
Q 015447 71 FNGDQG--KTYMFRISNVGLS--TSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQS--VSVLVTLNQ--PPKDYYI 142 (406)
Q Consensus 71 ~~v~~G--~~~rlRliN~~~~--~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR--~dv~v~~~~--~~g~y~i 142 (406)
+++++| +..|++|-|.|.. .-+.+.|++-.=|=|.+|+.-+ + .|.|||| +++-++++. .+|+|.|
T Consensus 391 lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aGdY~i 463 (513)
T COG1470 391 LTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAGDYRI 463 (513)
T ss_pred EEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCCcEEE
Confidence 667777 4579999999854 4577788777768888887733 2 2455665 455555554 4689998
Q ss_pred EEEecccCCCcceEEEEEeeCC
Q 015447 143 VASTRFTKNVLTATAILHYTNS 164 (406)
Q Consensus 143 r~~~~~~~~~~~~~ail~y~~~ 164 (406)
+.....+ .......||..-.
T Consensus 464 ~i~~ksD--q~s~e~tlrV~V~ 483 (513)
T COG1470 464 TITAKSD--QASSEDTLRVVVG 483 (513)
T ss_pred EEEEeec--cccccceEEEEEe
Confidence 8765443 2344455665433
No 90
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=59.91 E-value=50 Score=30.24 Aligned_cols=77 Identities=8% Similarity=0.038 Sum_probs=55.9
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|+.|++.++..|-. |.|+|-+-| ..+|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~vP~lg-----------------~K~Dav---PG~~n~~~~~~~~~G~ 191 (227)
T MTH00117 140 HRMVIPMESPIRILITAEDVL--------HSWAVPSLG-----------------VKTDAV---PGRLNQTSFITTRPGV 191 (227)
T ss_pred ceEEEecCceEEEEEEecchh--------hcccccccC-----------------ceeEec---CCceEEEEEEEcccce
Confidence 567889999999999988765 567765443 234533 5677778899999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEeccc
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVWNAV 382 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~~~~ 382 (406)
+.--|--+-.. |.-|-..+.|..++
T Consensus 192 y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (227)
T MTH00117 192 FYGQCSEICGANHSFMPIVVESVPLK 217 (227)
T ss_pred EEEEeccccccCccCCeEEEEEcCHH
Confidence 99999875544 55676666665543
No 91
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=59.19 E-value=65 Score=26.46 Aligned_cols=60 Identities=13% Similarity=0.282 Sum_probs=42.9
Q ss_pred EEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCccc-------ceeEeeEEEEcCCCeEEEEEEeCC
Q 015447 71 FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHT-------IQNIYDSLDVHVGQSVSVLVTLNQ 135 (406)
Q Consensus 71 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-------~P~~~~~i~l~~GeR~dv~v~~~~ 135 (406)
|.+.....|+|++-..+ ..+|.|||.. ||+.++..- .+.....+.+..|++|.|-|...+
T Consensus 54 ~~~~~~G~y~f~~~~~d---~~~l~idg~~--vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 54 FKPPETGTYTFSLTSDD---GARLWIDGKL--VIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEESSSEEEEEEEEESS---EEEEEETTEE--EEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EecccCceEEEEEEecc---cEEEEECCEE--EEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 78877778999998443 5778899985 577776543 345567788888999988888644
No 92
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=58.46 E-value=40 Score=31.62 Aligned_cols=77 Identities=5% Similarity=0.007 Sum_probs=55.2
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|..|++.+...|-. |.|+|=+-| ..+|.+ ||-...+.|.++.||.
T Consensus 174 n~lvlP~~~~v~~~ltS~DVi--------HSf~vP~lg-----------------vK~Dai---PGr~n~~~~~~~~~G~ 225 (262)
T MTH00027 174 NRLILPVDTNVRVLITAADVL--------HSWTVPSLA-----------------VKMDAV---PGRINETGFLIKRPGI 225 (262)
T ss_pred ceEEEeeCcEEEEEEEcCccc--------cceeccccc-----------------CcccCC---CCceeeEEEEcCCcEE
Confidence 567889999999999987654 466664443 234533 4555667889999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEeccc
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVWNAV 382 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~~~~ 382 (406)
+.-.|+-.-.. |..|-..+++..++
T Consensus 226 y~g~CsE~CG~~Hs~Mpi~v~vv~~~ 251 (262)
T MTH00027 226 FYGQCSEICGANHSFMPIVVESVSLS 251 (262)
T ss_pred EEEEcchhcCcCcCCCeEEEEEECHH
Confidence 99999986544 56777777776543
No 93
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=57.84 E-value=41 Score=30.78 Aligned_cols=78 Identities=8% Similarity=0.025 Sum_probs=54.9
Q ss_pred eEEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCce
Q 015447 277 TSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG 356 (406)
Q Consensus 277 ~~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG 356 (406)
.+.+.++.|+.|++.++..|-. |.|+|=+-| ...|.+ ||-...+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~tS~DVi--------Hsf~vP~lg-----------------~k~dai---PG~~n~~~~~~~~~G 190 (225)
T MTH00168 139 DNRLVLPMDSKIRVLVTSADVL--------HSWTLPSLG-----------------LKMDAV---PGRLNQLAFLSSRPG 190 (225)
T ss_pred cceEEEecCCEEEEEEEeCChh--------hcccccccc-----------------ccccCC---CCeEEEEEEEcCCCE
Confidence 3567899999999999988653 355554333 234543 566667888999999
Q ss_pred eeEEeeeehhhh-hcccEEEEEEeccc
Q 015447 357 MWNMRSAIWERQ-YLGQQFYLKVWNAV 382 (406)
Q Consensus 357 ~W~~HCHi~~H~-~~GM~~~~~v~~~~ 382 (406)
.+---|.-.-.. |.-|-..++|..++
T Consensus 191 ~~~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (225)
T MTH00168 191 SFYGQCSEICGANHSFMPIVVEFVPWE 217 (225)
T ss_pred EEEEEcccccCcCcCCCeEEEEEeCHH
Confidence 999999986544 55677667666543
No 94
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=56.99 E-value=42 Score=30.90 Aligned_cols=78 Identities=8% Similarity=0.023 Sum_probs=54.5
Q ss_pred eEEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCce
Q 015447 277 TSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG 356 (406)
Q Consensus 277 ~~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG 356 (406)
.+.+.++.|+.|++.+++.|-. |.|+|-+-| ...|.+ ||....+.|.++.||
T Consensus 143 dn~lvlP~~~~v~~~itS~DVi--------Hsf~vp~lg-----------------~k~dai---PG~~~~~~~~~~~~G 194 (234)
T MTH00051 143 DNRLIVPIQTQVRVLVTAADVL--------HSFAVPSLS-----------------VKIDAV---PGRLNQTSFFIKRPG 194 (234)
T ss_pred ceEEEEecCcEEEEEEEeCchh--------ccccccccC-----------------ceeEcc---CCceEeEEEEeCCCE
Confidence 3567899999999999998654 456664443 233432 566667788999999
Q ss_pred eeEEeeeehhhh-hcccEEEEEEeccc
Q 015447 357 MWNMRSAIWERQ-YLGQQFYLKVWNAV 382 (406)
Q Consensus 357 ~W~~HCHi~~H~-~~GM~~~~~v~~~~ 382 (406)
.+---|.-.-.. |.-|-..+++..++
T Consensus 195 ~y~g~Cse~CG~~Hs~M~i~v~vv~~~ 221 (234)
T MTH00051 195 VFYGQCSEICGANHSFMPIVIEGVSLD 221 (234)
T ss_pred EEEEEChhhcCcccccCeeEEEEECHH
Confidence 999999875433 55676667666543
No 95
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=56.75 E-value=35 Score=32.97 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=54.1
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|+.|++.+...|-+ |.|||=+-+ ...|.+ ||-...+.|.+|.||.
T Consensus 151 NeL~iP~g~pV~f~lTS~DVi--------HSF~IP~Lg-----------------~K~dam---PG~~n~l~~~a~~~G~ 202 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNSVM--------NSFFIPRLG-----------------SQIYAM---AGMQTRLHLIANEPGT 202 (315)
T ss_pred ccEEEecCCEEEEEEEEchhh--------hhhhhhhhC-----------------CeeecC---CCceeEEEEEcCCCEE
Confidence 346789999999999988765 467775443 134433 5666788899999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEe
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVW 379 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~ 379 (406)
+.-.|--.-.. |..|...+.+.
T Consensus 203 Y~G~CaEyCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 203 YDGISASYSGPGFSGMKFKAIAT 225 (315)
T ss_pred EEEEChhhcCccccCCeEEEEEE
Confidence 99999886544 56677766654
No 96
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=56.13 E-value=91 Score=25.45 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=37.5
Q ss_pred EEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCccc-ceeEeeEEEEcCCCeEEEEEEeCC
Q 015447 71 FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHT-IQNIYDSLDVHVGQSVSVLVTLNQ 135 (406)
Q Consensus 71 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-~P~~~~~i~l~~GeR~dv~v~~~~ 135 (406)
|.+.....|+|.+...+ ..++.|+|. .||..++..- .+.....+.+..|++|.|.|...+
T Consensus 52 i~~~~~G~y~f~~~~~~---~~~l~Idg~--~vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 52 LKPPEDGEYTFSITSDD---GARLWIDGK--LVIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EECCCCccEEEEEEcCC---cEEEEECCc--EEEcCCccCCCccccceeEEEeCCcEEEEEEEEEe
Confidence 66665667999985433 467889886 3555444322 223344677777888877777643
No 97
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=55.11 E-value=53 Score=30.22 Aligned_cols=77 Identities=5% Similarity=-0.051 Sum_probs=54.6
Q ss_pred EEEeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCcee
Q 015447 278 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 357 (406)
Q Consensus 278 ~~~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~ 357 (406)
+.+.++.|+.|++.+...|-. |.|+|=+-| ..+|.+ ||-...+.|.++.||.
T Consensus 143 n~l~lP~~~~v~~~itS~DVi--------HSf~vP~lg-----------------~K~Dav---PGr~n~~~~~~~~~G~ 194 (231)
T MTH00080 143 NRCVLPCDTNIRFCITSSDVI--------HSWALPSLS-----------------IKMDAM---SGILSTLCYSFPMPGV 194 (231)
T ss_pred CceEeecCcEEEEEEEeCccc--------ccccccccC-----------------ceeecc---CCceEEEEEEEcCceE
Confidence 456789999999999988653 455554433 234543 4556677889999999
Q ss_pred eEEeeeehhhh-hcccEEEEEEeccc
Q 015447 358 WNMRSAIWERQ-YLGQQFYLKVWNAV 382 (406)
Q Consensus 358 W~~HCHi~~H~-~~GM~~~~~v~~~~ 382 (406)
+.--|--.-.. |..|-..+.+..++
T Consensus 195 y~g~CsE~CG~~Hs~M~~~v~vv~~~ 220 (231)
T MTH00080 195 FYGQCSEICGANHSFMPIAVEVTLLD 220 (231)
T ss_pred EEEEehhhcCcCccCCEEEEEEECHH
Confidence 99999875433 56777777776553
No 98
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=53.77 E-value=52 Score=26.45 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=27.9
Q ss_pred EEEEEEEecCCC-ceEEEEEeCcE-EEEEEeCCcccceeEeeEEEEcCCCeEEEEEEe
Q 015447 78 TYMFRISNVGLS-TSFNFRIQGHT-MKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTL 133 (406)
Q Consensus 78 ~~rlRliN~~~~-~~~~~~i~gh~-~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~ 133 (406)
.|+|+|+|.+.. ..+.++++|.+ +++. . ....+.|.+|+..++-|..
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~-------~--~~~~i~v~~g~~~~~~v~v 82 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ-------G--PENTITVPPGETREVPVFV 82 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE--------E--S--EEEE-TT-EEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE-------C--CCcceEECCCCEEEEEEEE
Confidence 589999998865 56777777742 3330 1 2467888999987766654
No 99
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=52.13 E-value=83 Score=24.92 Aligned_cols=37 Identities=8% Similarity=0.149 Sum_probs=28.1
Q ss_pred ceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEEecc
Q 015447 112 IQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRF 148 (406)
Q Consensus 112 ~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~~~~ 148 (406)
.+...+.+...-.-|..++|.++=+.|.|+|.....+
T Consensus 51 ~~v~~~~i~~N~ps~l~~~lPa~L~~G~Y~l~V~Tq~ 87 (102)
T PF14734_consen 51 TKVPCSSIVRNKPSRLIFILPADLAAGEYTLEVRTQY 87 (102)
T ss_pred EEecHHHeEeCCCcEEEEECcCccCceEEEEEEEEEe
Confidence 3455566888888899999988667899999876543
No 100
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=51.45 E-value=1e+02 Score=23.23 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=39.5
Q ss_pred EEecCCEE--EEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEE-EEcCCCeEEEEEEeCC-CCceeEEEEEec
Q 015447 72 NGDQGKTY--MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSL-DVHVGQSVSVLVTLNQ-PPKDYYIVASTR 147 (406)
Q Consensus 72 ~v~~G~~~--rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i-~l~~GeR~dv~v~~~~-~~g~y~ir~~~~ 147 (406)
.+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....+ .|.+|+...+-+.... .+|.|.|++...
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD 84 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVID 84 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEES
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEe
Confidence 45566655 567888887644333332 34566555 33344 7899999888887643 578898887653
No 101
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=50.05 E-value=1.1e+02 Score=25.18 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=58.9
Q ss_pred eEEEeecC-CcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCcc-----c-cccCCCCC----CCccceEEeCCCCE
Q 015447 277 TSVMQVNL-HEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAE-----K-RRTYNLAD----TLTRHTAQVYPQSW 345 (406)
Q Consensus 277 ~~~~~v~~-g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~-----~-~~~~n~~~----p~~rDTv~vp~~g~ 345 (406)
+..+.|+. ++.+.++|.|.+.++.- .=||. |||... +....- . -..-|+.- -....|=+|-+|+.
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~--~MgHN-~Vl~k~-~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes 90 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKA--VMGHN-WVLAKS-ADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEK 90 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchh--ccCcc-EEEecc-ccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCce
Confidence 44577776 58999999998543211 11334 566554 222110 0 00112221 23456667889999
Q ss_pred EEEEEEec--Cce-eeEEeeeehhhhhcccEEEEE
Q 015447 346 TVILVSLD--NQG-MWNMRSAIWERQYLGQQFYLK 377 (406)
Q Consensus 346 ~~irf~ad--npG-~W~~HCHi~~H~~~GM~~~~~ 377 (406)
..|.|.+. .+| .+.|=|=.--|+. .|-..++
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 99999985 578 5999999988986 4766654
No 102
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=42.94 E-value=1.1e+02 Score=27.44 Aligned_cols=58 Identities=14% Similarity=0.242 Sum_probs=39.2
Q ss_pred eEEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEEe
Q 015447 70 TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAST 146 (406)
Q Consensus 70 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~~ 146 (406)
++.++.|+.+||++-+..-. +.|.+.+.. -.+..-||..-.+-+++++ +|.|..+...
T Consensus 118 ~l~vp~g~~v~~~~ts~DV~--Hsf~ip~~~----------------~k~da~PG~~~~~~~~~~~-~G~y~~~c~e 175 (201)
T TIGR02866 118 ELVVPAGTPVRLQVTSKDVI--HSFWVPELG----------------GKIDAIPGQYNALWFNADE-PGVYYGYCAE 175 (201)
T ss_pred EEEEEcCCEEEEEEEeCchh--hcccccccC----------------ceEEecCCcEEEEEEEeCC-CEEEEEEehh
Confidence 47888999999987775543 333333322 1344668888888888875 6899988654
No 103
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=41.57 E-value=33 Score=29.02 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.3
Q ss_pred eCCCCEEEEEEEe-cCc---eeeEEeeee
Q 015447 340 VYPQSWTVILVSL-DNQ---GMWNMRSAI 364 (406)
Q Consensus 340 vp~~g~~~irf~a-dnp---G~W~~HCHi 364 (406)
|+||..+.|.++. .|| |.|.|+|=.
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 5789999999954 466 899999977
No 104
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=39.58 E-value=1e+02 Score=31.21 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=25.4
Q ss_pred eEEeCCCCEEEEEEEecCceeeEEe----eeehhhhhcccE
Q 015447 337 TAQVYPQSWTVILVSLDNQGMWNMR----SAIWERQYLGQQ 373 (406)
Q Consensus 337 Tv~vp~~g~~~irf~adnpG~W~~H----CHi~~H~~~GM~ 373 (406)
.+.+.|.....+-|+++-||.|++- ||.+.-+..|-|
T Consensus 593 ~~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rm 633 (637)
T COG4263 593 NMEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRM 633 (637)
T ss_pred EEEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhccce
Confidence 3455667778889999999999865 566444444433
No 105
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=38.38 E-value=2.5e+02 Score=27.87 Aligned_cols=84 Identities=18% Similarity=0.247 Sum_probs=53.1
Q ss_pred eEEEcCCCCc--eEEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCC
Q 015447 60 GVLINGQGHT--TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP 137 (406)
Q Consensus 60 ~~liNG~~~~--~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~ 137 (406)
.+.|+..... .+.|++|+ ++|.+.|.+... +.|.++ +|..+. -..=.|+||....+.+++ .+
T Consensus 33 ~Vti~d~~c~p~~~tVpAG~-~~f~V~N~~~~~--------~Efe~~--~~~~vv---~e~EnIaPG~s~~l~~~L--~p 96 (375)
T PRK10378 33 KVTVNDKQCEPMTLTVNAGK-TQFIIQNHSQKA--------LEWEIL--KGVMVV---EERENIAPGFSQKMTANL--QP 96 (375)
T ss_pred EEEEECCccccCceeeCCCC-EEEEEEeCCCCc--------ceEEee--cccccc---ccccccCCCCceEEEEec--CC
Confidence 4666665433 29999996 899999998762 344444 232210 112378999888887777 37
Q ss_pred ceeEEEEEecccCCCcceEEEEEeeCC
Q 015447 138 KDYYIVASTRFTKNVLTATAILHYTNS 164 (406)
Q Consensus 138 g~y~ir~~~~~~~~~~~~~ail~y~~~ 164 (406)
|.|.+..... ....+.|..+|.
T Consensus 97 GtY~~~C~~~-----~~~~g~l~Vtg~ 118 (375)
T PRK10378 97 GEYDMTCGLL-----TNPKGKLIVKGE 118 (375)
T ss_pred ceEEeecCcC-----CCCCceEEEeCC
Confidence 9999976331 123566777764
No 106
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=35.83 E-value=1.4e+02 Score=26.42 Aligned_cols=101 Identities=13% Similarity=0.038 Sum_probs=57.7
Q ss_pred eEEEcCCCCc--eEEEecCCEEEEEEEecCCCceEEEEEeC-c----EEEEEEeCCcccc-eeEe----eEEEEcCCCeE
Q 015447 60 GVLINGQGHT--TFNGDQGKTYMFRISNVGLSTSFNFRIQG-H----TMKLVEVEGSHTI-QNIY----DSLDVHVGQSV 127 (406)
Q Consensus 60 ~~liNG~~~~--~~~v~~G~~~rlRliN~~~~~~~~~~i~g-h----~~~via~DG~~~~-P~~~----~~i~l~~GeR~ 127 (406)
.+=+||.... .+.+..|-++.+-|+|.... ++.+.|-- - .--.++.||.-+. +=.. ..=-+.+||+.
T Consensus 74 ~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~-pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 74 PFNFNGTSYGAMTIYLPAGWNVYVTFTNYESL-PHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred cccccCccCCceEEEEeCCCEEEEEEEcCCCC-CccEEEecCCCCCCCccccccCceeEeecccccCcccccccccccee
Confidence 3566776654 48899999999999999844 45544411 1 1123455554321 1011 11225688997
Q ss_pred EEEEEeCCCCceeEEEEEecccCCCcceEEEEEeeC
Q 015447 128 SVLVTLNQPPKDYYIVASTRFTKNVLTATAILHYTN 163 (406)
Q Consensus 128 dv~v~~~~~~g~y~ir~~~~~~~~~~~~~ail~y~~ 163 (406)
+..+..- ++|.||+...-..- -.....+.|-+..
T Consensus 153 sg~~~~~-~~G~YwlvCgipGH-AesGMw~~lIVSs 186 (195)
T TIGR03094 153 SGWWNDT-SAGKYWLVCGITGH-AESGMWAVVIVSS 186 (195)
T ss_pred EEEeccC-CCeeEEEEcccCCh-hhcCcEEEEEEec
Confidence 7777654 58999997543211 1223456665543
No 107
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=34.16 E-value=2e+02 Score=21.58 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=48.8
Q ss_pred eecCCcEEEEEEEcCCCCCCceeecC--CCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceee
Q 015447 281 QVNLHEYIEVVFQNNEKTMQSWHLDG--YDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 358 (406)
Q Consensus 281 ~v~~g~~v~ivl~N~~~~~HP~HlHG--~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W 358 (406)
.++.|+.+.|.|.......--|++.. ....+++... .+. +..+. .+-.+|..++.|+|..||.+
T Consensus 2 ~v~~g~~~~I~L~~npstGY~W~~~~~~~~l~l~~~~~---~~~-----~~~~~------~vG~~g~~~f~f~a~~~G~~ 67 (92)
T PF09394_consen 2 TVKVGDTFEIELPENPSTGYSWSLSSDSDGLQLVSEEY---IPD-----NSPSG------LVGAPGTRTFTFKALKPGTT 67 (92)
T ss_dssp EEETTSEEEEEEEEBCCGTBEEEECTSTTTEEEEEEEE---EES-----STSST------SSTSSEEEEEEEEESSSEEE
T ss_pred eecCCCEEEEEECCCCCCCeEEEEecCCCeEEEcCCcE---EeC-----CCCcC------CCCCCcEEEEEEEEecCeeE
Confidence 56789999999986554444455555 3333433321 000 00001 45567888999999999999
Q ss_pred EEeeeehhhhhcccE
Q 015447 359 NMRSAIWERQYLGQQ 373 (406)
Q Consensus 359 ~~HCHi~~H~~~GM~ 373 (406)
-++.--...|..+-.
T Consensus 68 ~i~~~y~r~we~~~~ 82 (92)
T PF09394_consen 68 TIKFEYRRPWEKGSP 82 (92)
T ss_dssp EEEEEEEBTTTBSTT
T ss_pred EEEEEEECcCCCCCc
Confidence 988876666655443
No 108
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=33.19 E-value=1.7e+02 Score=24.29 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=39.9
Q ss_pred EEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEEe
Q 015447 71 FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAST 146 (406)
Q Consensus 71 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~~ 146 (406)
+++++|+++ |++|.+.. +|+ |.+.++. .|.....+.-.+|+.|.+-++. +|.|.....+
T Consensus 56 v~v~pGDTV--tw~~~d~~--------~Hn--v~~~~~~--~~~g~~~~~~~~~~s~~~Tfe~---~G~Y~Y~C~P 114 (128)
T COG3794 56 VTVKPGDTV--TWVNTDSV--------GHN--VTAVGGM--DPEGSGTLKAGINESFTHTFET---PGEYTYYCTP 114 (128)
T ss_pred EEECCCCEE--EEEECCCC--------Cce--EEEeCCC--CcccccccccCCCcceEEEecc---cceEEEEecc
Confidence 899999975 66787764 343 3333333 4445667777778999888874 6888876554
No 109
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=33.01 E-value=2e+02 Score=23.24 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=34.6
Q ss_pred EEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEE
Q 015447 71 FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAS 145 (406)
Q Consensus 71 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~ 145 (406)
+.|++|++++| +|......+.+. +.++.. .....+.+.+|++|++-++ .+|.|.....
T Consensus 44 ltV~~GdTVtw--~~~~d~~~HnV~---------s~~~~~---f~s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~ 101 (115)
T TIGR03102 44 IRVDPGTTVVW--EWTGEGGGHNVV---------SDGDGD---LDESERVSEEGTTYEHTFE---EPGIYLYVCV 101 (115)
T ss_pred EEECCCCEEEE--EECCCCCCEEEE---------ECCCCC---ccccccccCCCCEEEEEec---CCcEEEEEcc
Confidence 89999998775 443322223322 223221 1123445678999999885 3688887654
No 110
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=32.15 E-value=1.4e+02 Score=30.31 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=32.3
Q ss_pred CEEEEEEEecCCC-ceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEe
Q 015447 77 KTYMFRISNVGLS-TSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTL 133 (406)
Q Consensus 77 ~~~rlRliN~~~~-~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~ 133 (406)
..|+++|+|.+.. ..+.++++|.+ |.-++- ..+.+.|.+||+.++.|..
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~-------~~~~~~-~~~~i~v~~g~~~~~~v~v 397 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLP-------GIKIEG-PGAPIHVKAGEKVKLPVFL 397 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCC-------CcEEEc-CCceEEECCCCEEEEEEEE
Confidence 3589999998754 66777777643 221110 0127899999998766654
No 111
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=31.09 E-value=1.7e+02 Score=24.24 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=29.5
Q ss_pred EEEEEEEecCCCceEEEEEeCcEEEEEEeCCcc--cc-e-eEeeEEEEcCCCeEEEE
Q 015447 78 TYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSH--TI-Q-NIYDSLDVHVGQSVSVL 130 (406)
Q Consensus 78 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~--~~-P-~~~~~i~l~~GeR~dv~ 130 (406)
.|++||-|.+.. .+.+-+....|...||.. |+ + ..-..=.|.|||.|..-
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEe
Confidence 479999998755 244445555565666652 11 1 11234568888876553
No 112
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=30.07 E-value=2.1e+02 Score=22.02 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=25.1
Q ss_pred EEEEEEEecCCCceEEEEEeCcEEEEEEeCCcc--cc-e-eEeeEEEEcCCCeEEEE
Q 015447 78 TYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSH--TI-Q-NIYDSLDVHVGQSVSVL 130 (406)
Q Consensus 78 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~--~~-P-~~~~~i~l~~GeR~dv~ 130 (406)
.|++||-|.+... +.|-.....|...||.. |+ + +.-..-.|.|||.|..-
T Consensus 15 ~Y~I~I~N~~~~~---vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~ 68 (90)
T PF04379_consen 15 AYRIRIENHSDES---VQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYT 68 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEE
T ss_pred EEEEEEEECCCCC---EEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEc
Confidence 4799999998772 44444455555555532 11 1 11134568888866543
No 113
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=29.66 E-value=2.6e+02 Score=22.44 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=42.4
Q ss_pred EEcCCCCceEEEecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccce----eEeeEEEEcCCCeEEEEEEeCC--
Q 015447 62 LINGQGHTTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQ----NIYDSLDVHVGQSVSVLVTLNQ-- 135 (406)
Q Consensus 62 liNG~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P----~~~~~i~l~~GeR~dv~v~~~~-- 135 (406)
++|-.+.+.-.+..|+.+++|+-=......-.+. -.+.+...+|..+-- .....+....++++.+.++++.
T Consensus 20 i~~~~g~~~~~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L 96 (142)
T PF14524_consen 20 ILDSDGEPTSSFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPL 96 (142)
T ss_dssp EEETTEES-SSEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B
T ss_pred EEeCCCCEeeEEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCcc
Confidence 4443333333466788888876544433222221 235666677765421 1123445555899999998876
Q ss_pred CCceeEEEEEe
Q 015447 136 PPKDYYIVAST 146 (406)
Q Consensus 136 ~~g~y~ir~~~ 146 (406)
.+|.|.|.+..
T Consensus 97 ~~G~Y~i~v~l 107 (142)
T PF14524_consen 97 NPGEYSISVGL 107 (142)
T ss_dssp -SEEEEEEEEE
T ss_pred CCCeEEEEEEE
Confidence 47999998765
No 114
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=27.71 E-value=1.5e+02 Score=27.33 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=31.1
Q ss_pred ceEEEecCCEEEEEEEecCCC--ceEEEEEeCcEEEEEEeCCcccce
Q 015447 69 TTFNGDQGKTYMFRISNVGLS--TSFNFRIQGHTMKLVEVEGSHTIQ 113 (406)
Q Consensus 69 ~~~~v~~G~~~rlRliN~~~~--~~~~~~i~gh~~~via~DG~~~~P 113 (406)
.++-+++| +|.||+|..+-. .-..+-|++ -+.++|.|+.+.+-
T Consensus 94 tPLyl~aG-tY~F~~iSPAka~~~dgk~~I~N-GeYl~aTd~rytqT 138 (310)
T PF15415_consen 94 TPLYLNAG-TYYFRMISPAKASNSDGKMNIDN-GEYLYATDNRYTQT 138 (310)
T ss_pred CceEEecc-eEEEEEeccccccccCceEEeCC-ceEEEEcCCceeEE
Confidence 45889997 799999987643 233444444 47999999999764
No 115
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=23.81 E-value=1.1e+02 Score=20.42 Aligned_cols=40 Identities=8% Similarity=-0.032 Sum_probs=29.4
Q ss_pred CCCCccceEE-eCCCCEEEEEEEecCceeeEEeeeehhhhh
Q 015447 330 ADTLTRHTAQ-VYPQSWTVILVSLDNQGMWNMRSAIWERQY 369 (406)
Q Consensus 330 ~~p~~rDTv~-vp~~g~~~irf~adnpG~W~~HCHi~~H~~ 369 (406)
..|..+-+.. .+.|+...+++.-..-..+=+||....|..
T Consensus 4 ~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~ 44 (49)
T PF14392_consen 4 SKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSD 44 (49)
T ss_pred CCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCH
Confidence 3455544333 456778888888888889999999988865
No 116
>PF12565 DUF3747: Protein of unknown function (DUF3747); InterPro: IPR022222 This family of proteins is found in bacteria. Proteins in this family are typically between 215 and 413 amino acids in length. There is a conserved DSNGYS sequence motif.
Probab=23.04 E-value=2.2e+02 Score=25.10 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=10.6
Q ss_pred CCEEEEEEEecCCC
Q 015447 76 GKTYMFRISNVGLS 89 (406)
Q Consensus 76 G~~~rlRliN~~~~ 89 (406)
|.+|||||+..+..
T Consensus 108 g~~YrLrlv~~~~e 121 (181)
T PF12565_consen 108 GLRYRLRLVQRNGE 121 (181)
T ss_pred CceEEEEEEEECCE
Confidence 56789998887654
No 117
>COG2954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.44 E-value=1.1e+02 Score=25.88 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=13.8
Q ss_pred EEEecCCEEEEEEEecC
Q 015447 71 FNGDQGKTYMFRISNVG 87 (406)
Q Consensus 71 ~~v~~G~~~rlRliN~~ 87 (406)
+...++.++|+|++...
T Consensus 31 ~at~~~~tVRVRi~g~~ 47 (156)
T COG2954 31 LATEQGRTVRVRIVGDR 47 (156)
T ss_pred eecCCCcEEEEEEecce
Confidence 55678999999999843
No 118
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730].
Probab=22.20 E-value=1.2e+02 Score=25.49 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=19.7
Q ss_pred CcEEEEEEEcCCCCCCceeecCC
Q 015447 285 HEYIEVVFQNNEKTMQSWHLDGY 307 (406)
Q Consensus 285 g~~v~ivl~N~~~~~HP~HlHG~ 307 (406)
+-.|++.|.+.....|-||+|-.
T Consensus 26 ~v~v~~~l~GL~pG~hg~HIHe~ 48 (144)
T cd00305 26 GVTITGELSGLTPGLHGFHIHEF 48 (144)
T ss_pred CEEEEEEEECCCCCceeEEEEec
Confidence 66888899999888999999964
No 119
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=22.16 E-value=63 Score=20.65 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=12.5
Q ss_pred EEEecCCEEEEEEEecC
Q 015447 71 FNGDQGKTYMFRISNVG 87 (406)
Q Consensus 71 ~~v~~G~~~rlRliN~~ 87 (406)
...-.|+.||||+-.++
T Consensus 16 ~I~H~g~~Y~LR~Tr~g 32 (38)
T PF10636_consen 16 RIEHGGQIYRLRITRQG 32 (38)
T ss_dssp EEEETTEEEEEEEETTT
T ss_pred EEEeCCeEEEeeEccCC
Confidence 34457899999987654
No 120
>PF06236 MelC1: Tyrosinase co-factor MelC1; InterPro: IPR010928 This family consists of several tyrosinase co-factor MELC1 proteins from a number of Streptomyces species. The melanin operon (melC) of Streptomyces antibioticus contains two genes, melC1 and melC2 (apotyrosinase). It is thought that MelC1 forms a transient binary complex with the downstream apotyrosinase MelC2 to facilitate the incorporation of copper ion and the secretion of tyrosinase indicating that MelC1 is a chaperone for the apotyrosinase MelC2 [].; GO: 0005507 copper ion binding, 0042438 melanin biosynthetic process; PDB: 1WX4_B 2ZWD_B 2ZMZ_B 1WX2_B 1WX5_D 3AWX_B 3AWS_B 2ZMY_B 3AX0_B 2ZWG_B ....
Probab=21.82 E-value=1.5e+02 Score=24.32 Aligned_cols=41 Identities=15% Similarity=0.231 Sum_probs=20.8
Q ss_pred EEEecCCEEEEEEEecCCC----ceEEEEEeCcEEEEE-EeCCccc
Q 015447 71 FNGDQGKTYMFRISNVGLS----TSFNFRIQGHTMKLV-EVEGSHT 111 (406)
Q Consensus 71 ~~v~~G~~~rlRliN~~~~----~~~~~~i~gh~~~vi-a~DG~~~ 111 (406)
-++-+|++++-+---++.. ..+.+.|||.++.|+ -.||.++
T Consensus 46 dE~YrGRrI~g~~~~~~~~~~~~~~~~V~IDGr~LhvMr~ADGswl 91 (125)
T PF06236_consen 46 DEVYRGRRIQGTPAAAGGHAAHGGGYEVTIDGRPLHVMRRADGSWL 91 (125)
T ss_dssp EEEETTEEEEEEE-----------SEEEEETTEEE-EEE-TTS-EE
T ss_pred ceeecceeEEeeeCCCCccccCCCceEEEECCeEeeeEEcCCCCEE
Confidence 3466777666555544322 346777788777776 4667665
No 121
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=21.75 E-value=3.6e+02 Score=20.31 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=35.3
Q ss_pred CEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEEEEEeCCCCceeEEEEE
Q 015447 77 KTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAS 145 (406)
Q Consensus 77 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv~v~~~~~~g~y~ir~~ 145 (406)
..++|.|.|.+.. ...|.+. ... + .......+.|.+|++.++.+.+....|-|.+.+.
T Consensus 20 g~l~l~l~N~g~~-~~~~~v~-------~~~--y-~~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl~v~ 77 (89)
T PF05506_consen 20 GNLRLTLSNPGSA-AVTFTVY-------DNA--Y-GGGGPWTYTVAAGQTVSLTWPLAASGGWYDLTVT 77 (89)
T ss_pred CEEEEEEEeCCCC-cEEEEEE-------eCC--c-CCCCCEEEEECCCCEEEEEEeecCCCCcEEEEEE
Confidence 3789999998755 3333332 211 1 1112366778888888888877555666766554
No 122
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=21.55 E-value=2.3e+02 Score=22.34 Aligned_cols=40 Identities=10% Similarity=-0.062 Sum_probs=31.1
Q ss_pred eEEeCCCCEEEEEEEecCceeeEEeeeehhhhhccc--EEEEEEe
Q 015447 337 TAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQ--QFYLKVW 379 (406)
Q Consensus 337 Tv~vp~~g~~~irf~adnpG~W~~HCHi~~H~~~GM--~~~~~v~ 379 (406)
...|.+|+...+.|..+-.|.-+|.|++.+ .|+ ...|.|-
T Consensus 28 ~~~l~~g~~~~~~F~~~~~~~t~f~C~~~~---~~~~~~~~f~vy 69 (110)
T PF05938_consen 28 WHVLKPGQSYSFSFRDNFFGTTLFWCHFRW---PGGKYHHSFDVY 69 (110)
T ss_pred CEECCCCCEEEEEEecCcCCceeEEEEEEE---CCccEEEEEEEE
Confidence 446888999999998887899999999954 565 5555554
No 123
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=21.01 E-value=3.7e+02 Score=26.69 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=40.7
Q ss_pred EeecCCcEEEEEEEcCCCCCCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceeeE
Q 015447 280 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWN 359 (406)
Q Consensus 280 ~~v~~g~~v~ivl~N~~~~~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W~ 359 (406)
..++.|. +.+.+.|.+... +.|.++..+. . -..|- .|.||....+.+.. -||.+.
T Consensus 46 ~tVpAG~-~~f~V~N~~~~~-------~Efe~~~~~~-v-------------v~e~E--nIaPG~s~~l~~~L-~pGtY~ 100 (375)
T PRK10378 46 LTVNAGK-TQFIIQNHSQKA-------LEWEILKGVM-V-------------VEERE--NIAPGFSQKMTANL-QPGEYD 100 (375)
T ss_pred eeeCCCC-EEEEEEeCCCCc-------ceEEeecccc-c-------------ccccc--ccCCCCceEEEEec-CCceEE
Confidence 4678897 555557776654 3566663110 0 00122 45566544444444 599999
Q ss_pred EeeeehhhhhcccEEEEEEec
Q 015447 360 MRSAIWERQYLGQQFYLKVWN 380 (406)
Q Consensus 360 ~HCHi~~H~~~GM~~~~~v~~ 380 (406)
|+| ..| ..|-..++|..
T Consensus 101 ~~C--~~~--~~~~g~l~Vtg 117 (375)
T PRK10378 101 MTC--GLL--TNPKGKLIVKG 117 (375)
T ss_pred eec--CcC--CCCCceEEEeC
Confidence 999 335 44556677754
No 124
>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=20.86 E-value=2.3e+02 Score=23.56 Aligned_cols=38 Identities=16% Similarity=0.335 Sum_probs=30.7
Q ss_pred CCceeecCCCeEEEeeccCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEecCceeeEEeeee
Q 015447 299 MQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAI 364 (406)
Q Consensus 299 ~HP~HlHG~~F~vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~W~~HCHi 364 (406)
.|.+=+|--.||.+|+..| || +.|.+.+...=+|+||+
T Consensus 75 LhSqPI~~IRvwGvGrdng-----------------rd-----------FA~vard~~T~~~~CHV 112 (138)
T cd01272 75 LHSQPIHTIRVWGVGRDNG-----------------RD-----------FAYVIRDERTRGSNCHV 112 (138)
T ss_pred EEeeeeeEEEEEEecCCCC-----------------cc-----------eEEEeecCCCceeEEEE
Confidence 5778888899999988754 24 67778888889999997
No 125
>PF11182 AlgF: Alginate O-acetyl transferase AlgF
Probab=20.62 E-value=5.7e+02 Score=22.54 Aligned_cols=30 Identities=10% Similarity=0.308 Sum_probs=19.3
Q ss_pred EEEEEEEecCCCceEEEEEeC-cEEEEEEeCC
Q 015447 78 TYMFRISNVGLSTSFNFRIQG-HTMKLVEVEG 108 (406)
Q Consensus 78 ~~rlRliN~~~~~~~~~~i~g-h~~~via~DG 108 (406)
.--+|+||++.. ...++++| ..+..++-|+
T Consensus 28 SAFVRvvN~~~~-~~~v~~~g~~~~~~~~~~~ 58 (181)
T PF11182_consen 28 SAFVRVVNASAA-PVSVTVSGSKAFQQLAPDQ 58 (181)
T ss_pred CeEEEEEcCCCC-cEEEEEecCCcccccCCCC
Confidence 345889998876 57777743 4555555444
No 126
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=20.27 E-value=2.8e+02 Score=20.23 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=7.9
Q ss_pred EEEEEeCcEEEEEEeCCccc
Q 015447 92 FNFRIQGHTMKLVEVEGSHT 111 (406)
Q Consensus 92 ~~~~i~gh~~~via~DG~~~ 111 (406)
+.|.+..-...-+..||..+
T Consensus 40 ~~i~iGna~~v~v~~nG~~~ 59 (77)
T PF13464_consen 40 FRIRIGNAGAVEVTVNGKPV 59 (77)
T ss_pred EEEEEeCCCcEEEEECCEEC
Confidence 33333333333334444443
No 127
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=20.05 E-value=1.7e+02 Score=25.98 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=30.4
Q ss_pred ecCCEEEEEEEecCCCceEEEEEeCcEEEEEEeCCcccceeEeeEEEEcCCCeEEE
Q 015447 74 DQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSV 129 (406)
Q Consensus 74 ~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~~~~i~l~~GeR~dv 129 (406)
+.|.+.++|+-|... ...++...=.+++.||....-..-..+.|.|||.+-+
T Consensus 114 rgggtlv~el~~~d~----~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL 165 (225)
T COG3822 114 RGGGTLVVELWNVDL----VEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITL 165 (225)
T ss_pred cCCceEEEEEecccc----ccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEec
Confidence 345566666666542 1233333345567777654333346788999998744
Done!