BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015448
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%)
Query: 20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
SIK+L LT ++DV+ L +NL+ L L N +T++ L NL++LS+ N++ L
Sbjct: 114 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLT 173
Query: 80 GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKEL 131
+ LSK T L NK+ + + S+ +L + L DN+I + L + L
Sbjct: 174 PLANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISDVSPLANLSNL 225
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 10 LKDNKTCDPNSIKSLS------LTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCV 63
LKDN+ D +K+L+ L+ L +VS + +++ LDL+S +T + L
Sbjct: 76 LKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 135
Query: 64 NLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSIC 123
NL+ L L N++ ++ + GL+ L++G N++ + + ++ L L +DN+I I
Sbjct: 136 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADDNKISDIS 195
Query: 124 KLDQMKEL 131
L + L
Sbjct: 196 PLASLPNL 203
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 61/119 (51%)
Query: 19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
N++ L L ++D++ L + + L+LS N L ++ + ++K L L ++ +
Sbjct: 69 NNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 128
Query: 79 KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
+ GLS VL + N++ ++ + + +L+ L + +N++ + L + +L TL D
Sbjct: 129 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRAD 187
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
++SL T+ +SD++ L NL+ L L+ N L + L NL L L N++ +L
Sbjct: 200 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 259
Query: 81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
+ GL+K T L +G N++ ++ + + +L L LN+N++ I + +K L L + YF
Sbjct: 260 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL--YF 317
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
+ L+L + ++D+ L + NL RL+LSSN ++ + L +L+ LS N++ LK
Sbjct: 113 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF-GNQVTDLKP 171
Query: 81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
+ L+ L++ NK+ + + + +L +LI +N+I I L + L+ L ++
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 228
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 24 LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
LSL L D+ L NL LDL++N +++L L L L L N++ ++ + G
Sbjct: 225 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 284
Query: 84 LSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFF 141
L+ T L + +N+L + ++++ +L L L N I I + + +L L FF
Sbjct: 285 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL-----FF 337
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
+ L L +S++S L L L+L+ N L + + + NL +L+L N + +
Sbjct: 266 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 325
Query: 81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
+ L+K L NK+ + + ++ ++ L N+I + L + + LG++
Sbjct: 326 VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 382
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%)
Query: 20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
++ +L L L D+S +++ NL L L NN++ + + L+ L NK+ +
Sbjct: 287 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS 346
Query: 80 GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILND 116
+ L+ L+ G N++ + + ++ + L LND
Sbjct: 347 SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND 383
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%)
Query: 40 FNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRS 99
NNL +++ S+N LT + LK+ L + + N++ + + L+ T L + N++
Sbjct: 66 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 125
Query: 100 MDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGM 136
+D + ++ +L L L+ N I I L + L L
Sbjct: 126 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 162
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 54/108 (50%)
Query: 31 LSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVL 90
++D TD + + L + S++G+++ NL ++ N+L + ++ L+K +
Sbjct: 35 VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI 94
Query: 91 NVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
+ N++ + + ++ +L L L +N+I I L + LN L + S
Sbjct: 95 LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 142
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
++SL T+ +SD++ L NL+ L L+ N L + L NL L L N++ +L
Sbjct: 201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 260
Query: 81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
+ GL+K T L +G N++ ++ + + +L L LN+N++ I + +K L L + YF
Sbjct: 261 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL--YF 318
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 24 LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
L+L + ++D+ L + NL RL+LSSN ++ + L +L+ LS N++ LK +
Sbjct: 117 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF-GNQVTDLKPLAN 175
Query: 84 LSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
L+ L++ NK+ + + + +L +LI +N+I I L + L+ L ++
Sbjct: 176 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 229
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 24 LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
LSL L D+ L NL LDL++N +++L L L L L N++ ++ + G
Sbjct: 226 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 285
Query: 84 LSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFF 141
L+ T L + +N+L + ++++ +L L L N I I + + +L L +F+
Sbjct: 286 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL----FFY 339
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%)
Query: 20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
++ +L L L D+S +++ NL L L NN++ + + L+ L NK+ +
Sbjct: 288 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS 347
Query: 80 GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILND 116
+ L+ L+ G N++ + + ++ + L LND
Sbjct: 348 SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND 384
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
+ L L +S++S L L L+L+ N L + + + NL +L+L N + +
Sbjct: 267 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 326
Query: 81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
+ L+K L NK+ + + ++ ++ L N+I + L + + LG++
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 383
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%)
Query: 40 FNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRS 99
NNL +++ S+N LT + LK+ L + + N++ + + L+ T L + N++
Sbjct: 67 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 126
Query: 100 MDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGM 136
+D + ++ +L L L+ N I I L + L L
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 54/108 (50%)
Query: 31 LSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVL 90
++D TD + + L + S++G+++ NL ++ N+L + ++ L+K +
Sbjct: 36 VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI 95
Query: 91 NVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
+ N++ + + ++ +L L L +N+I I L + LN L + S
Sbjct: 96 LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 143
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
++SL T+ +SD++ L NL+ L L+ N L + L NL L L N++ +L
Sbjct: 196 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 255
Query: 81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
+ GL+K T L +G N++ ++ + + +L L LN+N++ I + +K L L + YF
Sbjct: 256 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL--YF 313
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 24 LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
L+L + ++D+ L + NL RL+LSSN ++ + L +L+ L+ N++ LK +
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF-GNQVTDLKPLAN 170
Query: 84 LSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
L+ L++ NK+ + + + +L +LI +N+I I L + L+ L ++
Sbjct: 171 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 224
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 24 LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
LSL L D+ L NL LDL++N +++L L L L L N++ ++ + G
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 280
Query: 84 LSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFF 141
L+ T L + +N+L + ++++ +L L L N I I + + +L L FF
Sbjct: 281 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL-----FF 333
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
Query: 6 TQQILKDNKTCDPNSIKSLS------LTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGL 59
TQ +N+ D +K+L+ + + ++D++ L + NL L L +N +T ++ L
Sbjct: 66 TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 125
Query: 60 KHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEI 119
K+ NL L L N + + + GL+ LN G N++ + + ++ +L L ++ N++
Sbjct: 126 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFG-NQVTDLKPLANLTTLERLDISSNKV 184
Query: 120 VSICKLDQMKELNTL 134
I L ++ L +L
Sbjct: 185 SDISVLAKLTNLESL 199
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
+ L L +S++S L L L+L+ N L + + + NL +L+L N + +
Sbjct: 262 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 321
Query: 81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
+ L+K L NK+ + + ++ ++ L N+I + L + + LG++
Sbjct: 322 VSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 378
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%)
Query: 20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
++ +L L L D+S +++ NL L L NN++ + + L+ L NK+ +
Sbjct: 283 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVS 342
Query: 80 GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILND 116
+ L+ L+ G N++ + + ++ + L LND
Sbjct: 343 SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND 379
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%)
Query: 40 FNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRS 99
NNL +++ S+N LT + LK+ L + + N++ + + L+ T L + N++
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 121
Query: 100 MDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGM 136
+D + ++ +L L L+ N I I L + L L
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF 158
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 54/108 (50%)
Query: 31 LSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVL 90
++D TD + + L + S++G+++ NL ++ N+L + ++ L+K +
Sbjct: 31 VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI 90
Query: 91 NVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
+ N++ + + ++ +L L L +N+I I L + LN L + S
Sbjct: 91 LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
++SL T+ +SD++ L NL+ L L+ N L + L NL L L N++ +L
Sbjct: 196 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 255
Query: 81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
+ GL+K T L +G N++ ++ + + +L L LN+N++ I + +K L L + YF
Sbjct: 256 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL--YF 313
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 24 LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
L+L + ++D+ L + NL RL+LSSN ++ + L +L+ L+ N++ LK +
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF-GNQVTDLKPLAN 170
Query: 84 LSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
L+ L++ NK+ + + + +L +LI +N+I I L + L+ L ++
Sbjct: 171 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 224
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 24 LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
LSL L D+ L NL LDL++N +++L L L L L N++ ++ + G
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 280
Query: 84 LSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFF 141
L+ T L + +N+L + ++++ +L L L N I I + + +L L +F+
Sbjct: 281 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL----FFY 334
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
Query: 6 TQQILKDNKTCDPNSIKSLS------LTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGL 59
TQ +N+ D +K+L+ + + ++D++ L + NL L L +N +T ++ L
Sbjct: 66 TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 125
Query: 60 KHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEI 119
K+ NL L L N + + + GL+ LN G N++ + + ++ +L L ++ N++
Sbjct: 126 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFG-NQVTDLKPLANLTTLERLDISSNKV 184
Query: 120 VSICKLDQMKELNTL 134
I L ++ L +L
Sbjct: 185 SDISVLAKLTNLESL 199
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%)
Query: 20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
++ +L L L D+S +++ NL L L NN++ + + L+ L NK+ +
Sbjct: 283 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS 342
Query: 80 GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILND 116
+ L+ L+ G N++ + + ++ + L LND
Sbjct: 343 SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND 379
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
+ L L +S++S L L L+L+ N L + + + NL +L+L N + +
Sbjct: 262 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 321
Query: 81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
+ L+K L NK+ + + ++ ++ L N+I + L + + LG++
Sbjct: 322 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 378
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%)
Query: 40 FNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRS 99
NNL +++ S+N LT + LK+ L + + N++ + + L+ T L + N++
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 121
Query: 100 MDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGM 136
+D + ++ +L L L+ N I I L + L L
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF 158
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 54/108 (50%)
Query: 31 LSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVL 90
++D TD + + L + S++G+++ NL ++ N+L + ++ L+K +
Sbjct: 31 VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI 90
Query: 91 NVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
+ N++ + + ++ +L L L +N+I I L + LN L + S
Sbjct: 91 LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
++SL T+ +SD++ L NL+ L L+ N L + L NL L L N++ +L
Sbjct: 197 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
Query: 81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
+ GL+K T L +G N++ ++ + + +L L LN+N++ I + +K L L + YF
Sbjct: 257 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL--YF 314
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 62/114 (54%)
Query: 24 LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
L+L + ++D+ L + NL RL+LSSN ++ + L +L+ L+ N++ LK +
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLAN 171
Query: 84 LSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
L+ L++ NK+ + + + +L +LI +N+I I L + L+ L ++
Sbjct: 172 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 225
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 24 LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
LSL L D+ L NL LDL++N +++L L L L L N++ ++ + G
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 281
Query: 84 LSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFF 141
L+ T L + +N+L + ++++ +L L L N I I + + +L L +F+
Sbjct: 282 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL----FFY 335
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%)
Query: 20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
++ +L L L D+S +++ NL L L NN++ + + L+ L NK+ +
Sbjct: 284 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS 343
Query: 80 GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILND 116
+ L+ L+ G N++ + + ++ + L LND
Sbjct: 344 SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND 380
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
+ L L +S++S L L L+L+ N L + + + NL +L+L N + +
Sbjct: 263 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 322
Query: 81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
+ L+K L NK+ + + ++ ++ L N+I + L + + LG++
Sbjct: 323 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 379
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%)
Query: 40 FNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRS 99
NNL +++ S+N LT + LK+ L + + N++ + + L+ T L + N++
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 121
Query: 100 MDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
+D + ++ +L L L+ N I I L + L L S
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSS 160
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 54/108 (50%)
Query: 31 LSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVL 90
++D TD + + L + S++G+++ NL ++ N+L + ++ L+K +
Sbjct: 31 VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI 90
Query: 91 NVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
+ N++ + + ++ +L L L +N+I I L + LN L + S
Sbjct: 91 LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
++SL T+ +SD++ L NL+ L L+ N L + L NL L L N++ +L
Sbjct: 197 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
Query: 81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
+ GL+K T L +G N++ ++ + + +L L LN+N++ I + +K L L + YF
Sbjct: 257 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL--YF 314
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%)
Query: 24 LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
L+L + ++D+ L + NL RL+LSSN ++ + L +L+ LS N++ LK +
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLAN 171
Query: 84 LSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
L+ L++ NK+ + + + +L +LI +N+I I L + L+ L ++
Sbjct: 172 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 225
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 24 LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
LSL L D+ L NL LDL++N +++L L L L L N++ ++ + G
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 281
Query: 84 LSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFF 141
L+ T L + +N+L + ++++ +L L L N I I + + +L L FF
Sbjct: 282 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL-----FF 334
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
+ L L +S++S L L L+L+ N L + + + NL +L+L N + +
Sbjct: 263 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 322
Query: 81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
+ L+K L NK+ + + ++ ++ L N+I + L + + LG++
Sbjct: 323 VSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 379
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%)
Query: 20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
++ +L L L D+S +++ NL L L NN++ + + L+ L NK+ +
Sbjct: 284 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVS 343
Query: 80 GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILND 116
+ L+ L+ G N++ + + ++ + L LND
Sbjct: 344 SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND 380
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%)
Query: 40 FNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRS 99
NNL +++ S+N LT + LK+ L + + N++ + + L+ T L + N++
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 121
Query: 100 MDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
+D + ++ +L L L+ N I I L + L L S
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSS 160
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 54/108 (50%)
Query: 31 LSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVL 90
++D TD + + L + S++G+++ NL ++ N+L + ++ L+K +
Sbjct: 31 VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI 90
Query: 91 NVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
+ N++ + + ++ +L L L +N+I I L + LN L + S
Sbjct: 91 LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
++SL T+ +SD++ L NL+ L L+ N L + L NL L L N++ +L
Sbjct: 197 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
Query: 81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
+ GL+K T L +G N++ ++ + + +L L LN+N++ I + +K L L + YF
Sbjct: 257 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL--YF 314
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%)
Query: 24 LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
L+L + ++D+ L + NL RL+LSSN ++ + L +L+ LS N++ LK +
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLAN 171
Query: 84 LSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
L+ L++ NK+ + + + +L +LI +N+I I L + L+ L ++
Sbjct: 172 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 225
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 24 LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
LSL L D+ L NL LDL++N +++L L L L L N++ ++ + G
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 281
Query: 84 LSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFF 141
L+ T L + +N+L + ++++ +L L L N I I + + +L L +F+
Sbjct: 282 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL----FFY 335
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%)
Query: 20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
++ +L L L D+S +++ NL L L NN++ + + L+ L NK+ +
Sbjct: 284 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS 343
Query: 80 GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILND 116
+ L+ L+ G N++ + + ++ + L LND
Sbjct: 344 SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND 380
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
+ L L +S++S L L L+L+ N L + + + NL +L+L N + +
Sbjct: 263 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 322
Query: 81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
+ L+K L NK+ + + ++ ++ L N+I + L + + LG++
Sbjct: 323 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 379
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%)
Query: 40 FNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRS 99
NNL +++ S+N LT + LK+ L + + N++ + + L+ T L + N++
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 121
Query: 100 MDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
+D + ++ +L L L+ N I I L + L L S
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSS 160
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 54/108 (50%)
Query: 31 LSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVL 90
++D TD + + L + S++G+++ NL ++ N+L + ++ L+K +
Sbjct: 31 VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI 90
Query: 91 NVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
+ N++ + + ++ +L L L +N+I I L + LN L + S
Sbjct: 91 LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%)
Query: 20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
SIK+L LT ++DV+ L +NL+ L L N +T++ L NL++LS+ ++ L
Sbjct: 108 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT 167
Query: 80 GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKEL 131
+ LSK T L NK+ + + S+ +L + L +N+I + L L
Sbjct: 168 PLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNL 219
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 10 LKDNKTCDPNSIKSLS------LTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCV 63
LKDN+ D +K+L+ L+ L +VS + +++ LDL+S +T + L
Sbjct: 70 LKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129
Query: 64 NLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSIC 123
NL+ L L N++ ++ + GL+ L++G ++ + + ++ L L +DN+I I
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189
Query: 124 KLDQMKEL 131
L + L
Sbjct: 190 PLASLPNL 197
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
+K L L+H +SD+S L D LE L ++ N L +L G+ L L L N+L+
Sbjct: 65 LKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC-LSRLFLDNNELRDTDS 123
Query: 81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGM 136
+ L +L++ NKL+S+ + + L L L+ NEI + L ++K++N + +
Sbjct: 124 LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDL 179
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
N++K +L ++++D+ + + ++ + ++N+ SL G++ NLK L L N++ L
Sbjct: 20 NAVKQ-NLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL 78
Query: 79 KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGM 136
++ L+K L+V +N+L++++ + S L L L++NE+ L +K L L +
Sbjct: 79 SPLKDLTKLEELSVNRNRLKNLNGIPSAC-LSRLFLDNNELRDTDSLIHLKNLEILSI 135
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
+ SLSL + + D+S L +L N +T + + + L L + NK+ L
Sbjct: 179 LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSP 238
Query: 81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
+ LS+ T L +G N++ ++ V + L+ L + N+I I L+ + +LN+L ++
Sbjct: 239 LANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLN 295
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 62/111 (55%)
Query: 26 LTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLS 85
L +++DV + ++ +L ++ + S++G+++ NL++L+L N++ + + L
Sbjct: 29 LQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLV 88
Query: 86 KPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGM 136
K T L +G NK+ + + ++ +LR L LN++ I I L + + +L +
Sbjct: 89 KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKXYSLNL 139
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 10 LKDNKTCDPNSIKSLSLTHK------ALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCV 63
L N+ D + + SL+ H ++D++ + + L L + +N +T L L +
Sbjct: 184 LNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSPLANLS 243
Query: 64 NLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEI 119
L WL + N++ + ++ L+K LNVG N++ + + ++ L +L LN+N++
Sbjct: 244 QLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQL 299
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSN-NLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
++ L L +SD+S L + L+L +N NL+ L L + L +L++ ++K++ +
Sbjct: 112 LRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVT 171
Query: 80 GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGM 136
I L+ L++ N++ + + S+ SL N+I I + LN+L +
Sbjct: 172 PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKI 228
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 29/162 (17%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
++ L+L ++D+S L++ L L + +N +T + L++ NL+ L L ++ + +
Sbjct: 68 LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP 127
Query: 81 IEGLSKPTVLNVGKN-----------------------KLRSMDDVTSVVSLRALILNDN 117
+ L+K LN+G N K++ + + ++ L +L LN N
Sbjct: 128 LANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYN 187
Query: 118 EIVSICKLDQMKELNTLGMDSYFFXXXXXXXQGNPVAEYDKL 159
+I I L + L+ YF PVA +L
Sbjct: 188 QIEDISPLASLTSLH------YFTAYVNQITDITPVANXTRL 223
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 54/115 (46%)
Query: 24 LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
L++T + DV+ + + +L L L+ N + + L +L + + N++ + +
Sbjct: 160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVAN 219
Query: 84 LSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
++ L +G NK+ + + ++ L L + N+I I + + +L L + S
Sbjct: 220 XTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGS 274
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 74 KLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNT 133
K+ S++GIE L+ LN+ N++ + ++++V L L + N+I I L + L
Sbjct: 55 KVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRE 114
Query: 134 LGMD 137
L ++
Sbjct: 115 LYLN 118
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 49/101 (48%)
Query: 31 LSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVL 90
LSD+S L++ L L ++ + + + + + +L LSL N+++ + + L+
Sbjct: 145 LSDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYF 204
Query: 91 NVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKEL 131
N++ + V + L +L + +N+I + L + +L
Sbjct: 205 TAYVNQITDITPVANXTRLNSLKIGNNKITDLSPLANLSQL 245
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 18 PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS 77
PN + SL+L++ ++D+S + N+ +L L+ N LT ++ L + NL WL L +NK++
Sbjct: 66 PN-LTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD 124
Query: 78 LKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
L ++ L K L++ N + ++ + + L +L L +N+I I L ++ +L+TL ++
Sbjct: 125 LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 184
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 28 HKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKP 87
H +SD++ L LE L L +N +T + L L LSL N++ + + GL+K
Sbjct: 141 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 200
Query: 88 TVLNVGKNKLRSMDDVTSVVSLRALILNDNE 118
L + KN + + + + +L L L E
Sbjct: 201 QNLYLSKNHISDLRALAGLKNLDVLELFSQE 231
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 51 NNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLR 110
N ++ + GL H L+ L L NK+ + + L+K L++ N++ + + + L+
Sbjct: 142 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 201
Query: 111 ALILNDNEIVSICKLDQMKELNTLGMDS 138
L L+ N I + L +K L+ L + S
Sbjct: 202 NLYLSKNHISDLRALAGLKNLDVLELFS 229
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 80/134 (59%), Gaps = 7/134 (5%)
Query: 7 QQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLK 66
+QI D+ + +IK+ +L K+++D + N+++++ +++++ S++G+++ N++
Sbjct: 10 KQIFPDDAFAE--TIKA-NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVR 66
Query: 67 WLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK 124
+L+L NKL + ++ L+ T L + N+L+S+ + + +L+ L+L +N++ S+
Sbjct: 67 YLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 125 --LDQMKELNTLGM 136
D++ L L +
Sbjct: 127 GVFDKLTNLTYLNL 140
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 31/135 (22%)
Query: 18 PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG--------LKHCV------ 63
PN ++ L+L L D+S L + NL L L+ N L SL LK V
Sbjct: 63 PN-VRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 64 ------------NLKWLSLVQNKLQSL-KGI-EGLSKPTVLNVGKNKLRSMDD--VTSVV 107
NL +L+L N+LQSL KG+ + L+ T L++ N+L+S+ + +
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181
Query: 108 SLRALILNDNEIVSI 122
L+ L L N++ S+
Sbjct: 182 QLKDLRLYQNQLKSV 196
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 87/158 (55%), Gaps = 14/158 (8%)
Query: 7 QQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLK 66
+QI D+ + +IK+ +L K+++D + N+++++ +++++ S++G+++ N++
Sbjct: 10 KQIFPDDAFAE--TIKA-NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVR 66
Query: 67 WLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK 124
+L+L NKL + ++ L+ T L + N+L+S+ + + +L+ L+L +N++ S+
Sbjct: 67 YLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 125 --LDQMKELNTLGMDSYFFXXXXXXXQGNPVAEYDKLA 160
D++ L L Y + Q P +DKL
Sbjct: 127 GVFDKLTNLTYL----YLY---HNQLQSLPKGVFDKLT 157
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 80/162 (49%), Gaps = 16/162 (9%)
Query: 35 SCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPT-VLNVG 93
+ L+ + L LS+NN+ + L NL+ LSL +N ++ ++ ++ ++ L +
Sbjct: 43 ATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 102
Query: 94 KNKLRSMDDVTSVVSLRALILNDN------EIVSICKLDQMKELNTLGMDSYFFXXXXXX 147
N++ S+ + +V+LR L +++N EI + LD++++L G Y
Sbjct: 103 YNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY-----NDY 157
Query: 148 XQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNI 189
+ N +EY +V LPNL + P+D + + E+ N+
Sbjct: 158 KENNATSEY---RIEVVKRLPNLKKLDGMPVD-VDEREQANV 195
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 4 LSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDF-NNLERLDLSSNNLTSLEGLKHC 62
LST I K + +++ LSL + + L + LE L +S N + SL G++
Sbjct: 56 LSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKL 115
Query: 63 VNLKWLSLVQNKLQSLKGIEGLS 85
VNL+ L + NK+ + I+ L+
Sbjct: 116 VNLRVLYMSNNKITNWGEIDKLA 138
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 80/162 (49%), Gaps = 16/162 (9%)
Query: 35 SCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPT-VLNVG 93
+ L+ + L LS+NN+ + L NL+ LSL +N ++ ++ ++ ++ L +
Sbjct: 42 ATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101
Query: 94 KNKLRSMDDVTSVVSLRALILNDN------EIVSICKLDQMKELNTLGMDSYFFXXXXXX 147
N++ S+ + +V+LR L +++N EI + LD++++L G Y
Sbjct: 102 YNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY-----NDY 156
Query: 148 XQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNI 189
+ N +EY +V LPNL + P+D + + E+ N+
Sbjct: 157 KENNATSEY---RIEVVKRLPNLKKLDGMPVD-VDEREQANV 194
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 4 LSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDF-NNLERLDLSSNNLTSLEGLKHC 62
LST I K + +++ LSL + + L + LE L +S N + SL G++
Sbjct: 55 LSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKL 114
Query: 63 VNLKWLSLVQNKLQSLKGIEGLS 85
VNL+ L + NK+ + I+ L+
Sbjct: 115 VNLRVLYMSNNKITNWGEIDKLA 137
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 64/119 (53%)
Query: 19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
NSI + + + V + N+ +L L+ N LT ++ L + NL WL L +NK++ L
Sbjct: 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL 102
Query: 79 KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
++ L K L++ N + ++ + + L +L L +N+I I L ++ +L+TL ++
Sbjct: 103 SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 161
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 28 HKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKP 87
H +SD++ L LE L L +N +T + L L LSL N++ + + GL+K
Sbjct: 118 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 177
Query: 88 TVLNVGKNKLRSMDDVTSVVSLRALILNDNE 118
L + KN + + + + +L L L E
Sbjct: 178 QNLYLSKNHISDLRALAGLKNLDVLELFSQE 208
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 18 PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS 77
PN K L L L+D+ LT+ NL L L N + L LK LK LSL N +
Sbjct: 65 PNVTK-LFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD 123
Query: 78 LKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGM 136
+ G+ L + L +G NK+ + ++ + L L L DN+I I L + +L L +
Sbjct: 124 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 182
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 64/119 (53%)
Query: 19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
NSI + + + V + N+ +L L+ N LT ++ L + NL WL L +NK++ L
Sbjct: 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL 105
Query: 79 KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
++ L K L++ N + ++ + + L +L L +N+I I L ++ +L+TL ++
Sbjct: 106 SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 164
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 28 HKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKP 87
H +SD++ L LE L L +N +T + L L LSL N++ + + GL+K
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 180
Query: 88 TVLNVGKNKLRSMDDVTSVVSLRALILNDNE 118
L + KN + + + + +L L L E
Sbjct: 181 QNLYLSKNHISDLRALAGLKNLDVLELFSQE 211
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 51 NNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLR 110
N ++ + GL H L+ L L NK+ + + L+K L++ N++ + + + L+
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 181
Query: 111 ALILNDNEIVSICKLDQMKELNTLGMDS 138
L L+ N I + L +K L+ L + S
Sbjct: 182 NLYLSKNHISDLRALAGLKNLDVLELFS 209
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 64/119 (53%)
Query: 19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
NSI + + + V + N+ +L L+ N LT ++ L + NL WL L +NK++ L
Sbjct: 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL 105
Query: 79 KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
++ L K L++ N + ++ + + L +L L +N+I I L ++ +L+TL ++
Sbjct: 106 SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 164
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 28 HKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKP 87
H +SD++ L LE L L +N +T + L L LSL N++ + + GL+K
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 180
Query: 88 TVLNVGKNKLRSMDDVTSVVSLRALILNDNE 118
L + KN + + + + +L L L E
Sbjct: 181 QNLYLSKNHISDLRALAGLKNLDVLELFSQE 211
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 51 NNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLR 110
N ++ + GL H L+ L L NK+ + + L+K L++ N++ + + + L+
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 181
Query: 111 ALILNDNEIVSICKLDQMKELNTLGMDS 138
L L+ N I + L +K L+ L + S
Sbjct: 182 NLYLSKNHISDLRALAGLKNLDVLELFS 209
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 64/119 (53%)
Query: 19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
NSI + + + V + N+ +L L+ N LT ++ L + NL WL L +NK++ L
Sbjct: 44 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL 103
Query: 79 KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
++ L K L++ N + ++ + + L +L L +N+I I L ++ +L+TL ++
Sbjct: 104 SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 162
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 28 HKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKP 87
H +SD++ L LE L L +N +T + L L LSL N++ + + GL+K
Sbjct: 119 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 178
Query: 88 TVLNVGKNKLRSMDDVTSVVSLRALILNDNE 118
L + KN + + + + +L L L E
Sbjct: 179 QNLYLSKNHISDLRALAGLKNLDVLELFSQE 209
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 51 NNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLR 110
N ++ + GL H L+ L L NK+ + + L+K L++ N++ + + + L+
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 179
Query: 111 ALILNDNEIVSICKLDQMKELNTLGMDS 138
L L+ N I + L +K L+ L + S
Sbjct: 180 NLYLSKNHISDLRALAGLKNLDVLELFS 207
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 64/119 (53%)
Query: 19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
NSI + + + V + N+ +L L+ N LT ++ L + NL WL L +NK++ L
Sbjct: 44 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL 103
Query: 79 KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
++ L K L++ N + ++ + + L +L L +N+I I L ++ +L+TL ++
Sbjct: 104 SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 162
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%)
Query: 51 NNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLR 110
N ++ + GL H L+ L L NK+ + + L+K L++ N++R + + + L+
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARLTKLQ 179
Query: 111 ALILNDNEIVSICKLDQMKELNTLGMDS 138
L L+ N I + L +K L+ L + S
Sbjct: 180 NLYLSKNHISDLRALRGLKNLDVLELFS 207
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 28 HKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKP 87
H +SD++ L LE L L +N +T + L L LSL N+++ + + L+K
Sbjct: 119 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARLTKL 178
Query: 88 TVLNVGKNKLRSM 100
L + KN + +
Sbjct: 179 QNLYLSKNHISDL 191
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
++ SL + +++D++ + L +L +SNN+T+L+ L NL +L+ NKL +L
Sbjct: 43 TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL- 100
Query: 80 GIEGLSKPTVLNVGKNKLRSMD 101
+ L+K T LN NKL +D
Sbjct: 101 DVTPLTKLTYLNCDTNKLTKLD 122
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 64/119 (53%)
Query: 19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
NSI + + + V + N+ +L L+ N LT ++ L + NL WL L +NK++ L
Sbjct: 41 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL 100
Query: 79 KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
++ L K L++ N + ++ + + L +L L +N+I I L ++ +L+TL ++
Sbjct: 101 SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 159
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 28 HKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKP 87
H +SD++ L LE L L +N +T + L L LSL N++ + + L+K
Sbjct: 116 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACLTKL 175
Query: 88 TVLNVGKNKLRSMDDVTSVVSLRALILNDNE 118
L + KN + + + + +L L L E
Sbjct: 176 QNLYLSKNHISDLRALCGLKNLDVLELFSQE 206
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 51 NNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLR 110
N ++ + GL H L+ L L NK+ + + L+K L++ N++ + + + L+
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACLTKLQ 176
Query: 111 ALILNDNEIVSICKLDQMKELNTLGMDS 138
L L+ N I + L +K L+ L + S
Sbjct: 177 NLYLSKNHISDLRALCGLKNLDVLELFS 204
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 64/119 (53%)
Query: 19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
NSI + + + V + N+ +L L+ N LT ++ L + NL WL L +NK++ L
Sbjct: 64 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL 123
Query: 79 KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
++ L K L++ N + ++ + + L +L L +N+I I L ++ +L+TL ++
Sbjct: 124 SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 182
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 28 HKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKP 87
H +SD++ L LE L L +N +T + L L LSL N++ + + GL+K
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 198
Query: 88 TVLNVGKNKLRSMDDVTSVVSLRALILNDNE 118
L + KN + + + + +L L L E
Sbjct: 199 QNLYLSKNHISDLRALAGLKNLDVLELFSQE 229
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 51 NNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLR 110
N ++ + GL H L+ L L NK+ + + L+K L++ N++ + + + L+
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 199
Query: 111 ALILNDNEIVSICKLDQMKELNTLGMDS 138
L L+ N I + L +K L+ L + S
Sbjct: 200 NLYLSKNHISDLRALAGLKNLDVLELFS 227
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 18 PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS 77
PN K L L L+D+ LT+ NL L L N + L LK LK LSL N +
Sbjct: 86 PNVTK-LFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD 144
Query: 78 LKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGM 136
+ G+ L + L +G NK+ + ++ + L L L DN+I I L + +L L +
Sbjct: 145 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 203
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 64/119 (53%)
Query: 19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
NSI + + + V + N+ +L L+ N LT ++ L + NL WL L +NK++ L
Sbjct: 64 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL 123
Query: 79 KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
++ L K L++ N + ++ + + L +L L +N+I I L ++ +L+TL ++
Sbjct: 124 SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 182
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 28 HKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKP 87
H +SD++ L LE L L +N +T + L L LSL N++ + + GL+K
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 198
Query: 88 TVLNVGKNKLRSMDDVTSVVSLRALILNDNE 118
L + KN + + + + +L L L E
Sbjct: 199 QNLYLSKNHISDLRALAGLKNLDVLELFSQE 229
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 51 NNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLR 110
N ++ + GL H L+ L L NK+ + + L+K L++ N++ + + + L+
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 199
Query: 111 ALILNDNEIVSICKLDQMKELNTLGMDS 138
L L+ N I + L +K L+ L + S
Sbjct: 200 NLYLSKNHISDLRALAGLKNLDVLELFS 227
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 18 PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS 77
PN K L L L+D+ LT+ NL L L N + L LK LK LSL N +
Sbjct: 86 PNVTK-LFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD 144
Query: 78 LKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGM 136
+ G+ L + L +G NK+ + ++ + L L L DN+I I L + +L L +
Sbjct: 145 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 203
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 64/119 (53%)
Query: 19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
NSI + + + V + N+ +L L+ N LT ++ L + NL WL L +NK++ L
Sbjct: 64 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL 123
Query: 79 KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
++ L K L++ N + ++ + + L +L L +N+I I L ++ +L+TL ++
Sbjct: 124 SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 182
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 28 HKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKP 87
H +SD++ L LE L L +N +T + L L LSL N++ + + GL+K
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 198
Query: 88 TVLNVGKNKLRSMDDVTSVVSLRALILNDNE 118
L + KN + + + + +L L L E
Sbjct: 199 QNLYLSKNHISDLRALAGLKNLDVLELFSQE 229
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 51 NNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLR 110
N ++ + GL H L+ L L NK+ + + L+K L++ N++ + + + L+
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 199
Query: 111 ALILNDNEIVSICKLDQMKELNTLGMDS 138
L L+ N I + L +K L+ L + S
Sbjct: 200 NLYLSKNHISDLRALAGLKNLDVLELFS 227
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 18 PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS 77
PN K L L L+D+ LT+ NL L L N + L LK LK LSL N +
Sbjct: 86 PNVTK-LFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD 144
Query: 78 LKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGM 136
+ G+ L + L +G NK+ + ++ + L L L DN+I I L + +L L +
Sbjct: 145 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 203
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 64/119 (53%)
Query: 19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
NSI + + + V + N+ +L L+ N LT ++ L + NL WL L +NK++ L
Sbjct: 41 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL 100
Query: 79 KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
++ L K L++ N + ++ + + L +L L +N+I I L ++ +L+TL ++
Sbjct: 101 SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 159
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 28 HKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKP 87
H +SD++ L LE L L +N +T + L L LSL N++ + + GL+K
Sbjct: 116 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 175
Query: 88 TVLNVGKNKLRSMDDVTSVVSLRALILNDNE 118
L + KN + + + + +L L L E
Sbjct: 176 QNLYLSKNHISDLRALAGLKNLDVLELFSQE 206
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 51 NNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLR 110
N ++ + GL H L+ L L NK+ + + L+K L++ N++ + + + L+
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 176
Query: 111 ALILNDNEIVSICKLDQMKELNTLGMDS 138
L L+ N I + L +K L+ L + S
Sbjct: 177 NLYLSKNHISDLRALAGLKNLDVLELFS 204
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 18 PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS 77
PN K L L L+D+ LT+ NL L L N + L LK LK LSL N +
Sbjct: 63 PNVTK-LFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD 121
Query: 78 LKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGM 136
+ G+ L + L +G NK+ + ++ + L L L DN+I I L + +L L +
Sbjct: 122 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 180
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQNKLQSLK 79
++ L L HK L+ + L + LDLS N L +L L L+ L N L+++
Sbjct: 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 502
Query: 80 GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKE 130
G+ L + L + N+L+ + +VS L+L + + S+C+ + ++E
Sbjct: 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQNKLQSLK 79
++ L L HK L+ + L + LDLS N L +L L L+ L N L+++
Sbjct: 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 502
Query: 80 GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKE 130
G+ L + L + N+L+ + +VS L+L + + S+C+ + ++E
Sbjct: 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 57/141 (40%), Gaps = 21/141 (14%)
Query: 37 LTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLKGIEG-LSKPTVLNVGK 94
+ + +NL LDLS N LTSL L C LK+ N + +L G L L V
Sbjct: 266 IKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325
Query: 95 NKL-RSMDDVTSVVSLRALI--LNDNEI-VSICKLDQMKELNTLGMDSYFFXXXXXXXQG 150
N L + + + S+ LI L DN + + + E+NT G
Sbjct: 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINT---------------DG 370
Query: 151 NPVAEYDKLAKKVKTLLPNLC 171
P EYD L + + L +L
Sbjct: 371 EPQREYDSLQQSTEHLATDLA 391
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 21/110 (19%)
Query: 20 SIKSLSLTHK----ALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHC--------VNLKW 67
S+K L+ T A S+V D +LE LDLS N L+ K C ++LK+
Sbjct: 350 SLKRLTFTSNKGGNAFSEV----DLPSLEFLDLSRNGLS----FKGCCSQSDFGTISLKY 401
Query: 68 LSLVQNKLQSLKG-IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILND 116
L L N + ++ GL + L+ + L+ M + + +SLR LI D
Sbjct: 402 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL-EGLKHCVNLKWLSLVQNKL 75
++++ L+L + + DV F L+ LDLSSN L + + + W+SL NKL
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL 226
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 43 LERLDLSSNNLTS--LEGLKHCVNLKWLSLVQNKL 75
LE L L N+LT GL +C NL W+SL N+L
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL-EGLKHCVNLKWLSLVQNKL 75
++++ L+L + + DV F L+ LDLSSN L + + + W+SL NKL
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL 226
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 43 LERLDLSSNNLTS--LEGLKHCVNLKWLSLVQNKL 75
LE L L N+LT GL +C NL W+SL N+L
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 18 PNSIKSLSLTHKALSDV-SCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQ 76
P ++ L+L+ + V +C+ LE LD+S+NNL S L+ L + +NKL+
Sbjct: 409 PEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFSLF--LPRLQELYISRNKLK 464
Query: 77 SLKGIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDN 117
+L V+ + +N+L+S+ D + SL+ + L+ N
Sbjct: 465 TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 21/110 (19%)
Query: 20 SIKSLSLTHK----ALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCV--------NLKW 67
S+K L+ T A S+V D +LE LDLS N L+ K C +LK+
Sbjct: 326 SLKRLTFTSNKGGNAFSEV----DLPSLEFLDLSRNGLS----FKGCCSQSDFGTTSLKY 377
Query: 68 LSLVQNKLQSLKG-IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILND 116
L L N + ++ GL + L+ + L+ M + + +SLR LI D
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 31/120 (25%)
Query: 29 KALSDVSCLTDFNNLERLDLSS-----------NNLTSLEGLK----------------H 61
K +S+ S NL LD+S N L+SLE LK
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468
Query: 62 CVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDN 117
NL +L L Q +L+ L LS VLN+ N+L+S+ D + SL+ + L+ N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 21/110 (19%)
Query: 20 SIKSLSLTHK----ALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCV--------NLKW 67
S+K L+ T A S+V D +LE LDLS N L+ K C +LK+
Sbjct: 326 SLKRLTFTSNKGGNAFSEV----DLPSLEFLDLSRNGLS----FKGCCSQSDFGTTSLKY 377
Query: 68 LSLVQNKLQSLKG-IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILND 116
L L N + ++ GL + L+ + L+ M + + +SLR LI D
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 90 LNVGKNKLRSMDDVTSVVS----LRALILNDNEIVSICKLDQMK--ELNTLGMD 137
LN+ N+L +DD++S+V L+ L L+ NE+ S +LD++K +L L +D
Sbjct: 175 LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 228
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 90 LNVGKNKLRSMDDVTSVVS----LRALILNDNEIVSICKLDQMK--ELNTLGMD 137
LN+ N+L +DD++S+V L+ L L+ NE+ S +LD++K +L L +D
Sbjct: 175 LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 228
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 90 LNVGKNKLRSMDDVTSVVS----LRALILNDNEIVSICKLDQMK--ELNTLGMD 137
LN+ N+L +DD++S+V L+ L L+ NE+ S +LD++K +L L +D
Sbjct: 169 LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 222
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 90 LNVGKNKLRSMDDVTSVVS----LRALILNDNEIVSICKLDQMK--ELNTLGMD 137
LN+ N+L +DD++S+V L+ L L+ NE+ S +LD++K +L L +D
Sbjct: 175 LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 228
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 18 PNSIKSLSLTHKALSDV-SCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQ 76
P ++ L+L+ + V +C+ LE LD+S+NNL S L+ L + +NKL+
Sbjct: 435 PEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFSLF--LPRLQELYISRNKLK 490
Query: 77 SLKGIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDN 117
+L V+ + N+L+S+ D + SL+ + L+ N
Sbjct: 491 TLPDASLFPVLLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTN 533
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Query: 90 LNVGKNKLRSMDDVTSVVS----LRALILNDNEIVSICKLDQMKEL 131
LN+ N+L +DD++S+V L+ L L+ NE+ S +LD++K L
Sbjct: 169 LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL 214
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 41 NNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLR 98
++L+ L L+ N L SL H L+ LSL N+L L + + +L++ +N+L
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLL 539
Query: 99 SMD-DVTSVVSLRALILNDNEIVSICKL 125
+ + DV VSL L + N+ + C+L
Sbjct: 540 APNPDV--FVSLSVLDITHNKFICECEL 565
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,047,999
Number of Sequences: 62578
Number of extensions: 345171
Number of successful extensions: 622
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 224
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)