Query 015448
Match_columns 406
No_of_seqs 450 out of 2139
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:24:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14580 LRR_9: Leucine-rich r 99.8 1.5E-20 3.2E-25 169.4 4.4 160 1-191 1-163 (175)
2 KOG0444 Cytoskeletal regulator 99.6 2.7E-17 5.8E-22 168.0 -0.5 54 314-367 468-527 (1255)
3 KOG0617 Ras suppressor protein 99.6 1.6E-17 3.4E-22 146.5 -5.8 149 11-159 25-191 (264)
4 KOG4194 Membrane glycoprotein 99.6 1.2E-15 2.6E-20 155.3 4.6 159 2-160 154-336 (873)
5 KOG4194 Membrane glycoprotein 99.6 5.4E-16 1.2E-20 157.7 1.4 171 2-175 178-423 (873)
6 KOG0444 Cytoskeletal regulator 99.5 3.4E-15 7.3E-20 152.8 -1.8 134 4-137 62-205 (1255)
7 PLN00113 leucine-rich repeat r 99.5 2.6E-13 5.7E-18 152.3 12.6 122 16-137 137-268 (968)
8 PLN00113 leucine-rich repeat r 99.4 4.1E-13 8.8E-18 150.8 12.2 134 40-176 139-292 (968)
9 KOG1259 Nischarin, modulator o 99.4 1.6E-14 3.5E-19 137.2 -1.3 140 19-167 284-425 (490)
10 PRK15387 E3 ubiquitin-protein 99.3 8.3E-12 1.8E-16 135.2 10.7 149 20-180 283-459 (788)
11 KOG0617 Ras suppressor protein 99.3 9.6E-14 2.1E-18 122.7 -3.8 126 33-158 25-167 (264)
12 PRK15387 E3 ubiquitin-protein 99.3 1.9E-11 4E-16 132.5 11.7 145 4-158 289-462 (788)
13 KOG1644 U2-associated snRNP A' 99.3 2.5E-12 5.5E-17 116.2 4.2 160 1-190 1-162 (233)
14 KOG0618 Serine/threonine phosp 99.2 7.2E-13 1.6E-17 141.2 -0.8 154 4-157 294-492 (1081)
15 PF14580 LRR_9: Leucine-rich r 99.2 8.1E-12 1.7E-16 112.7 4.0 125 47-184 3-131 (175)
16 KOG1259 Nischarin, modulator o 99.2 1.8E-12 3.9E-17 123.4 -1.4 123 2-124 289-416 (490)
17 KOG1859 Leucine-rich repeat pr 99.2 2.6E-13 5.7E-18 141.1 -8.7 152 18-179 163-322 (1096)
18 KOG0531 Protein phosphatase 1, 99.2 3.7E-12 8.1E-17 130.2 -0.7 153 4-156 79-247 (414)
19 KOG0472 Leucine-rich repeat pr 99.2 2.9E-13 6.2E-18 133.0 -8.6 142 17-158 135-292 (565)
20 PRK15370 E3 ubiquitin-protein 99.1 5E-11 1.1E-15 129.5 7.0 170 3-179 226-428 (754)
21 PRK15370 E3 ubiquitin-protein 99.1 1.5E-10 3.3E-15 125.8 10.2 135 17-158 197-363 (754)
22 KOG4237 Extracellular matrix p 99.1 5.5E-12 1.2E-16 123.8 -2.3 122 16-137 64-196 (498)
23 KOG0472 Leucine-rich repeat pr 99.1 9.2E-13 2E-17 129.5 -7.9 167 5-175 99-282 (565)
24 COG4886 Leucine-rich repeat (L 99.1 6.9E-11 1.5E-15 119.7 3.8 158 14-176 111-285 (394)
25 KOG0532 Leucine-rich repeat (L 99.0 5.7E-12 1.2E-16 128.5 -5.2 154 3-158 81-251 (722)
26 PLN03210 Resistant to P. syrin 99.0 1.9E-09 4.1E-14 123.3 14.6 77 19-95 611-691 (1153)
27 KOG0618 Serine/threonine phosp 99.0 4.8E-12 1E-16 135.0 -6.7 112 65-179 361-487 (1081)
28 PLN03210 Resistant to P. syrin 99.0 2.3E-09 4.9E-14 122.7 14.4 141 18-158 588-742 (1153)
29 COG4886 Leucine-rich repeat (L 99.0 1.2E-10 2.6E-15 117.9 3.5 157 2-158 121-294 (394)
30 KOG3207 Beta-tubulin folding c 99.0 5.8E-11 1.3E-15 118.0 0.5 165 18-191 196-377 (505)
31 KOG3207 Beta-tubulin folding c 99.0 4.5E-11 9.7E-16 118.8 -0.8 165 17-183 144-343 (505)
32 KOG0531 Protein phosphatase 1, 99.0 5.2E-11 1.1E-15 121.8 -1.7 157 2-158 100-272 (414)
33 KOG4237 Extracellular matrix p 98.9 2.3E-11 4.9E-16 119.6 -5.3 179 2-183 72-363 (498)
34 cd00116 LRR_RI Leucine-rich re 98.9 1.1E-09 2.3E-14 106.9 5.3 138 18-155 50-235 (319)
35 cd00116 LRR_RI Leucine-rich re 98.9 1.1E-09 2.4E-14 106.8 4.7 166 17-182 79-294 (319)
36 KOG0532 Leucine-rich repeat (L 98.9 1.7E-10 3.6E-15 117.9 -1.5 132 4-137 105-242 (722)
37 KOG2982 Uncharacterized conser 98.8 1.5E-09 3.2E-14 103.7 1.2 174 18-191 70-302 (418)
38 KOG1909 Ran GTPase-activating 98.6 1.7E-08 3.7E-13 98.2 3.2 160 19-178 92-308 (382)
39 PF13855 LRR_8: Leucine rich r 98.6 2.9E-08 6.3E-13 73.6 3.2 53 43-95 3-59 (61)
40 PF13855 LRR_8: Leucine rich r 98.6 3.8E-08 8.3E-13 73.0 3.2 57 63-119 1-61 (61)
41 KOG2123 Uncharacterized conser 98.5 4.9E-09 1.1E-13 99.3 -3.9 117 62-187 18-136 (388)
42 KOG1859 Leucine-rich repeat pr 98.5 2.8E-09 6.1E-14 111.6 -6.5 155 18-186 108-299 (1096)
43 KOG2739 Leucine-rich acidic nu 98.5 8.1E-08 1.8E-12 90.4 3.4 114 62-184 42-159 (260)
44 KOG1909 Ran GTPase-activating 98.4 6.5E-08 1.4E-12 94.2 1.8 138 37-174 88-276 (382)
45 KOG1644 U2-associated snRNP A' 98.4 3.3E-07 7.2E-12 83.4 6.0 100 45-151 46-150 (233)
46 KOG4658 Apoptotic ATPase [Sign 98.4 2.4E-07 5.1E-12 102.7 5.6 112 7-118 533-653 (889)
47 PLN03150 hypothetical protein; 98.3 1.4E-06 2.9E-11 93.9 7.7 103 42-155 419-529 (623)
48 KOG2123 Uncharacterized conser 98.3 7.6E-09 1.7E-13 98.0 -8.6 97 1-97 1-100 (388)
49 PLN03150 hypothetical protein; 98.2 2.4E-06 5.3E-11 92.0 8.2 78 21-98 420-503 (623)
50 PF12799 LRR_4: Leucine Rich r 98.2 1E-06 2.3E-11 61.1 3.0 37 42-78 2-39 (44)
51 PF12799 LRR_4: Leucine Rich r 98.2 1.4E-06 3.1E-11 60.4 3.3 38 64-101 2-40 (44)
52 KOG4658 Apoptotic ATPase [Sign 98.1 5E-06 1.1E-10 92.3 6.5 123 15-137 519-650 (889)
53 KOG3665 ZYG-1-like serine/thre 98.0 2.3E-06 5E-11 92.7 3.0 149 19-173 122-280 (699)
54 KOG4579 Leucine-rich repeat (L 98.0 2.6E-07 5.7E-12 79.4 -3.9 128 43-184 29-164 (177)
55 KOG2739 Leucine-rich acidic nu 98.0 2.8E-06 6E-11 80.1 1.8 104 19-123 18-132 (260)
56 KOG4579 Leucine-rich repeat (L 97.9 6E-07 1.3E-11 77.2 -4.1 105 20-124 28-140 (177)
57 KOG2982 Uncharacterized conser 97.8 8.9E-06 1.9E-10 78.2 2.2 176 21-198 47-256 (418)
58 COG5238 RNA1 Ran GTPase-activa 97.7 3.3E-05 7.1E-10 73.5 4.8 162 18-179 29-253 (388)
59 KOG3665 ZYG-1-like serine/thre 97.6 3.3E-05 7.2E-10 83.8 3.7 105 17-121 146-264 (699)
60 PRK15386 type III secretion pr 97.5 0.00045 9.8E-09 70.2 9.2 72 18-97 51-124 (426)
61 COG5238 RNA1 Ran GTPase-activa 97.5 9.1E-05 2E-09 70.6 3.5 121 36-156 87-257 (388)
62 KOG2120 SCF ubiquitin ligase, 97.4 1.9E-06 4.1E-11 82.7 -8.0 160 20-181 186-376 (419)
63 KOG2120 SCF ubiquitin ligase, 97.4 1.2E-05 2.6E-10 77.4 -3.3 151 18-171 209-390 (419)
64 PRK15386 type III secretion pr 97.2 0.00095 2.1E-08 67.9 7.5 108 37-155 48-170 (426)
65 PF13306 LRR_5: Leucine rich r 96.8 0.0043 9.2E-08 52.1 6.7 77 37-116 8-90 (129)
66 PF13306 LRR_5: Leucine rich r 96.4 0.0095 2.1E-07 49.9 6.6 103 15-123 8-118 (129)
67 KOG3763 mRNA export factor TAP 96.2 0.0029 6.2E-08 65.7 2.8 90 82-181 215-314 (585)
68 PF13504 LRR_7: Leucine rich r 93.2 0.062 1.3E-06 29.3 1.6 14 64-77 2-15 (17)
69 KOG1947 Leucine rich repeat pr 93.2 0.014 3E-07 59.9 -1.8 102 18-119 187-307 (482)
70 PF00560 LRR_1: Leucine Rich R 93.1 0.039 8.4E-07 32.1 0.7 15 65-79 2-16 (22)
71 KOG4308 LRR-containing protein 92.4 0.005 1.1E-07 64.3 -6.4 161 21-181 89-305 (478)
72 KOG0473 Leucine-rich repeat pr 92.3 0.0021 4.6E-08 60.2 -8.4 83 59-153 38-123 (326)
73 KOG0473 Leucine-rich repeat pr 91.9 0.0031 6.8E-08 59.1 -7.7 90 31-120 30-124 (326)
74 PF13504 LRR_7: Leucine rich r 91.8 0.1 2.2E-06 28.4 1.3 15 86-100 2-16 (17)
75 PF00560 LRR_1: Leucine Rich R 89.0 0.2 4.3E-06 29.1 0.9 15 109-123 2-16 (22)
76 KOG1947 Leucine rich repeat pr 88.7 0.16 3.5E-06 52.0 0.7 126 39-174 186-327 (482)
77 KOG4308 LRR-containing protein 88.2 0.0093 2E-07 62.3 -8.8 141 17-157 113-306 (478)
78 KOG4341 F-box protein containi 87.2 0.42 9.2E-06 48.5 2.6 147 38-191 291-449 (483)
79 smart00370 LRR Leucine-rich re 86.8 0.56 1.2E-05 28.1 2.0 17 63-79 2-18 (26)
80 smart00369 LRR_TYP Leucine-ric 86.8 0.56 1.2E-05 28.1 2.0 17 63-79 2-18 (26)
81 KOG3864 Uncharacterized conser 85.9 0.3 6.5E-06 45.1 0.7 85 86-181 102-189 (221)
82 smart00370 LRR Leucine-rich re 85.6 0.76 1.6E-05 27.5 2.2 17 85-101 2-18 (26)
83 smart00369 LRR_TYP Leucine-ric 85.6 0.76 1.6E-05 27.5 2.2 17 85-101 2-18 (26)
84 KOG4341 F-box protein containi 83.5 0.45 9.8E-06 48.3 0.8 148 17-174 292-458 (483)
85 smart00365 LRR_SD22 Leucine-ri 82.6 1.2 2.5E-05 27.2 2.0 16 42-57 3-18 (26)
86 smart00365 LRR_SD22 Leucine-ri 82.0 1.1 2.5E-05 27.2 1.9 17 63-79 2-18 (26)
87 KOG3864 Uncharacterized conser 79.5 0.44 9.6E-06 44.0 -0.8 100 63-172 101-208 (221)
88 smart00364 LRR_BAC Leucine-ric 76.6 1.8 3.8E-05 26.5 1.4 17 86-102 3-19 (26)
89 KOG3763 mRNA export factor TAP 72.2 1.7 3.7E-05 45.7 1.1 60 61-120 216-283 (585)
90 PF13516 LRR_6: Leucine Rich r 64.2 3 6.6E-05 24.3 0.6 11 64-74 3-13 (24)
91 smart00368 LRR_RI Leucine rich 53.2 11 0.00024 23.0 1.8 13 42-54 3-15 (28)
92 smart00446 LRRcap occurring C- 50.4 11 0.00023 23.0 1.4 21 157-177 2-22 (26)
93 TIGR00864 PCC polycystin catio 27.8 43 0.00092 42.2 2.7 36 91-126 1-38 (2740)
94 TIGR00864 PCC polycystin catio 27.1 34 0.00073 43.0 1.7 31 69-99 1-33 (2740)
95 smart00367 LRR_CC Leucine-rich 20.0 1.1E+02 0.0025 17.9 2.3 13 140-152 1-13 (26)
No 1
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.81 E-value=1.5e-20 Score=169.38 Aligned_cols=160 Identities=27% Similarity=0.453 Sum_probs=57.4
Q ss_pred CCccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCC-CCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC
Q 015448 1 MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLT-DFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79 (406)
Q Consensus 1 m~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~-~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~ 79 (406)
||+|+.+-|.++....++..+++|+|.+|.|+.+..++ .+.+|+.|+|++|.|+.++++..++
T Consensus 1 ~~~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~---------------- 64 (175)
T PF14580_consen 1 MVRLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLP---------------- 64 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS--S--TT----T----------------
T ss_pred CccccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChh----------------
Confidence 78888888887777777777777777777777666554 3555555555555555555554444
Q ss_pred CCCCCCCCcEEEcCCCCCCCCc-CC-CCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCch
Q 015448 80 GIEGLSKPTVLNVGKNKLRSMD-DV-TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYD 157 (406)
Q Consensus 80 ~l~~l~~L~~L~Ls~N~i~~l~-~l-~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~ 157 (406)
.|++|++++|.|+++. .+ ..+++|+.|+|++|+|.++..+..+. .+++|+.|+|.+||++..+
T Consensus 65 ------~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~---------~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 65 ------RLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLS---------SLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp ------T--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGG---------G-TT--EEE-TT-GGGGST
T ss_pred ------hhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHH---------cCCCcceeeccCCcccchh
Confidence 4555555555555543 23 24566667777777766665544443 5679999999999999999
Q ss_pred hHHHHHHhcCCCcccccCcCCChhhhhhhhhhhc
Q 015448 158 KLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVD 191 (406)
Q Consensus 158 ~~~~~~~~~lp~L~~Ld~~~~~~~~~~~~~~~l~ 191 (406)
.|+.+++..+|+|+.||+.+++..++..+..++.
T Consensus 130 ~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~~~f~ 163 (175)
T PF14580_consen 130 NYRLFVIYKLPSLKVLDGQDVTEEERQEAEKLFK 163 (175)
T ss_dssp THHHHHHHH-TT-SEETTEETTS-B---------
T ss_pred hHHHHHHHHcChhheeCCEEccHHHhcccccccc
Confidence 9999999999999999999999999998887775
No 2
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.63 E-value=2.7e-17 Score=168.01 Aligned_cols=54 Identities=15% Similarity=0.232 Sum_probs=37.8
Q ss_pred HhhhhhcccCcccccCCcccchhhhhhhcccCCCCCCC---C---CcchhccccccccCc
Q 015448 314 QKKRSKEKQGELDIIDNGETAFSELFSANIAGNPGFDG---D---NNMVNEASKFNSVDG 367 (406)
Q Consensus 314 ~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~ 367 (406)
.+-.+++..-|...++-+.+.|.++|--..|.-|+.-- + -...++|.-+++..|
T Consensus 468 ~~~es~k~~rWd~~lEKprlDYS~fF~eDvGqlpGltiWeIENF~P~~~eEafHGkFYea 527 (1255)
T KOG0444|consen 468 RQLESKKAVRWDKNLEKPRLDYSDFFDEDVGQLPGLTIWEIENFYPSIMEEAFHGKFYEA 527 (1255)
T ss_pred cCccccCccchhhcCccccCcHHHhcccccCCCCCceEEeehhhhhHHHHHHhccceecc
Confidence 33445666778888899999999999988887776532 1 244566666666555
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=1.6e-17 Score=146.52 Aligned_cols=149 Identities=26% Similarity=0.390 Sum_probs=134.5
Q ss_pred CCCCCCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC-CCCCCCCC
Q 015448 11 KDNKTCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK-GIEGLSKP 87 (406)
Q Consensus 11 ~~~~~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L 87 (406)
.+..+.++++++.|.|++|.++.+| .+..+.+|++|+|++|+|+.+|. ++.++.|+.|+++-|++..+| +|+.++.|
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 3445566889999999999999987 88999999999999999999985 999999999999999999999 89999999
Q ss_pred cEEEcCCCCCCC--Cc-CCCCCCCCCEEEccCCccCCccc-cCCCCCCcEeeCC-----------CCCCCCCEEEcCCCC
Q 015448 88 TVLNVGKNKLRS--MD-DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMD-----------SYFFNLNNLNLQGNP 152 (406)
Q Consensus 88 ~~L~Ls~N~i~~--l~-~l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls-----------~~l~~L~~L~Ls~N~ 152 (406)
++|+|.+|.+.. +| .|..+..|+.|.|++|.+.-+|. ++.+++|+.|.+. +.+..|+.|.+.+|.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 999999999976 67 48889999999999999999885 9999999999887 677889999999999
Q ss_pred CCCchhH
Q 015448 153 VAEYDKL 159 (406)
Q Consensus 153 i~~~~~~ 159 (406)
++-+++.
T Consensus 185 l~vlppe 191 (264)
T KOG0617|consen 185 LTVLPPE 191 (264)
T ss_pred eeecChh
Confidence 9888763
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.57 E-value=1.2e-15 Score=155.27 Aligned_cols=159 Identities=25% Similarity=0.375 Sum_probs=128.3
Q ss_pred CccccccccCCCCCCCC--CCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCC
Q 015448 2 TRLSTQQILKDNKTCDP--NSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKL 75 (406)
Q Consensus 2 ~~Ls~n~i~~~~~~~~~--~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l 75 (406)
++||.|.|..+...+.+ .+|..|+|++|.|+.+. +|..+.+|..|.|+.|+|+.+|. |.+|++|+.|+|..|.|
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 56788888777654443 57888888888888875 78888888888888888888874 77888888888888888
Q ss_pred CCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------
Q 015448 76 QSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------ 137 (406)
Q Consensus 76 ~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------ 137 (406)
.-+. .|.+|++|+.|.|..|.|..+. .|..|..+++|+|+.|+++.+.. +-.|+.|+.|+|+
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 8665 4788888888888888888875 37778888899999998888763 7788888888888
Q ss_pred CCCCCCCEEEcCCCCCCCchhHH
Q 015448 138 SYFFNLNNLNLQGNPVAEYDKLA 160 (406)
Q Consensus 138 ~~l~~L~~L~Ls~N~i~~~~~~~ 160 (406)
..+++|..|+|+.|.|+.++.-.
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~s 336 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGS 336 (873)
T ss_pred hhcccceeEeccccccccCChhH
Confidence 67888999999999888876543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.56 E-value=5.4e-16 Score=157.69 Aligned_cols=171 Identities=22% Similarity=0.308 Sum_probs=110.3
Q ss_pred CccccccccCCC--CCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--------------------
Q 015448 2 TRLSTQQILKDN--KTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE-------------------- 57 (406)
Q Consensus 2 ~~Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~-------------------- 57 (406)
+.|+.|.|+++. .+..+.+|.+|-|+.|.|+.+| .|..++.|+.|+|..|.|.-..
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence 356777777774 3445677777888888887776 5666777777777766654321
Q ss_pred ------CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--c
Q 015448 58 ------GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--L 125 (406)
Q Consensus 58 ------~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l 125 (406)
.|..|.++++|+|..|+++.+. .+.+|+.|+.|+||+|.|..+. .|...+.|..|+|++|+|+.++. |
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf 337 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF 337 (873)
T ss_pred ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence 1334555556666666665554 3556666666666666666642 46666666666666666666543 4
Q ss_pred CCCCC------------------------CcEeeCC---------------CCCCCCCEEEcCCCCCCCchhHHHHHHhc
Q 015448 126 DQMKE------------------------LNTLGMD---------------SYFFNLNNLNLQGNPVAEYDKLAKKVKTL 166 (406)
Q Consensus 126 ~~L~~------------------------L~~L~Ls---------------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~ 166 (406)
..|.. |+.|||+ .+|+.|+.|.|.||+|..++.- .+..
T Consensus 338 ~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr---Afsg 414 (873)
T KOG4194|consen 338 RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR---AFSG 414 (873)
T ss_pred HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh---hhcc
Confidence 44444 4444444 5688888888888888887753 4677
Q ss_pred CCCcccccC
Q 015448 167 LPNLCIFNA 175 (406)
Q Consensus 167 lp~L~~Ld~ 175 (406)
++.|+.||.
T Consensus 415 l~~LE~LdL 423 (873)
T KOG4194|consen 415 LEALEHLDL 423 (873)
T ss_pred CcccceecC
Confidence 888887764
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.47 E-value=3.4e-15 Score=152.83 Aligned_cols=134 Identities=22% Similarity=0.353 Sum_probs=95.9
Q ss_pred cccccccCCC-CCCCCCCccEEEeeCCCCC--CCC-CCCCCCCCcEEEccCCCCCCCC-CCCCCCCCcEEEecCCCCCCC
Q 015448 4 LSTQQILKDN-KTCDPNSIKSLSLTHKALS--DVS-CLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQNKLQSL 78 (406)
Q Consensus 4 Ls~n~i~~~~-~~~~~~~L~~L~Ls~n~l~--~i~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N~l~~l 78 (406)
+++|++..+. .+..++.|+.+.+.+|++. ++| .+-.+.-|++||||+|+++..| .+..-.++-+|+||+|+|.+|
T Consensus 62 ~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetI 141 (1255)
T KOG0444|consen 62 MAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETI 141 (1255)
T ss_pred hhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccC
Confidence 4556666664 4566778888888888774 455 5667778888888888888876 377777888888888888888
Q ss_pred CC--CCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCc--cccCCCCCCcEeeCC
Q 015448 79 KG--IEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSI--CKLDQMKELNTLGMD 137 (406)
Q Consensus 79 ~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l--~~l~~L~~L~~L~Ls 137 (406)
|. +-+|+-|-.|+||+|++..+| .+..+..|++|.|++|++..+ ..+..+++|++|.++
T Consensus 142 Pn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 142 PNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred CchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence 83 667777888888888888776 477777888888888866432 234555555555555
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.46 E-value=2.6e-13 Score=152.28 Aligned_cols=122 Identities=25% Similarity=0.383 Sum_probs=62.8
Q ss_pred CCCCCccEEEeeCCCCCC-CC-CCCCCCCCcEEEccCCCCCC-CC-CCCCCCCCcEEEecCCCCC-CCC-CCCCCCCCcE
Q 015448 16 CDPNSIKSLSLTHKALSD-VS-CLTDFNNLERLDLSSNNLTS-LE-GLKHCVNLKWLSLVQNKLQ-SLK-GIEGLSKPTV 89 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~~-i~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~~L~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~ 89 (406)
..+++|++|+|++|.++. ++ .+..+++|++|+|++|.+.. +| .+.++++|++|+|++|.+. .+| .+..+++|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 344555555555555543 23 45556666666666665543 23 2555566666666666554 233 3555555555
Q ss_pred EEcCCCCCCC-Cc-CCCCCCCCCEEEccCCccCC-cc-ccCCCCCCcEeeCC
Q 015448 90 LNVGKNKLRS-MD-DVTSVVSLRALILNDNEIVS-IC-KLDQMKELNTLGMD 137 (406)
Q Consensus 90 L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~L~~L~~L~Ls 137 (406)
|+|++|.+.. +| .+..+++|++|+|++|.++. ++ .+..+++|++|+|+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence 5555555543 33 34555555555555555542 22 24444555555444
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.44 E-value=4.1e-13 Score=150.75 Aligned_cols=134 Identities=25% Similarity=0.295 Sum_probs=66.4
Q ss_pred CCCCcEEEccCCCCCC-CC-CCCCCCCCcEEEecCCCCC-CCC-CCCCCCCCcEEEcCCCCCCC-Cc-CCCCCCCCCEEE
Q 015448 40 FNNLERLDLSSNNLTS-LE-GLKHCVNLKWLSLVQNKLQ-SLK-GIEGLSKPTVLNVGKNKLRS-MD-DVTSVVSLRALI 113 (406)
Q Consensus 40 l~~L~~L~Ls~N~l~~-l~-~l~~L~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~ 113 (406)
+++|++|+|++|.++. ++ .+..+++|++|+|++|.+. .+| .+..+++|++|+|++|.+.. +| .+..+++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 3444444444444432 22 2444555555555555544 333 34555555555555555443 23 345555555555
Q ss_pred ccCCccCC-cc-ccCCCCCCcEeeCC------------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448 114 LNDNEIVS-IC-KLDQMKELNTLGMD------------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 114 Ls~N~i~~-l~-~l~~L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~ 176 (406)
|++|.++. ++ .+..+++|++|+|+ ..+++|+.|+|++|.+....+. .+..+++|+.|+..
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls 292 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP---SIFSLQKLISLDLS 292 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch---hHhhccCcCEEECc
Confidence 55555542 22 25555666666555 3455666666666666433211 23455666665543
No 9
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.41 E-value=1.6e-14 Score=137.18 Aligned_cols=140 Identities=24% Similarity=0.348 Sum_probs=120.5
Q ss_pred CCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCC-CCCCCCcEEEcCCCC
Q 015448 19 NSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI-EGLSKPTVLNVGKNK 96 (406)
Q Consensus 19 ~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l-~~l~~L~~L~Ls~N~ 96 (406)
..|++|+|++|.|+.+. ++.-+|.++.|++|+|.|..+..+..|++|+.|+|++|.++.+.++ ..+-++++|.|+.|.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 46888999999999886 7777899999999999999998899999999999999999988863 456788999999999
Q ss_pred CCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcC
Q 015448 97 LRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLL 167 (406)
Q Consensus 97 i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~l 167 (406)
|.++.++..+.+|..|++++|+|..+..+... +.+|.|.+|.|.+||+..++.|+..++..+
T Consensus 364 iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~I---------G~LPCLE~l~L~~NPl~~~vdYRTKVLa~F 425 (490)
T KOG1259|consen 364 IETLSGLRKLYSLVNLDLSSNQIEELDEVNHI---------GNLPCLETLRLTGNPLAGSVDYRTKVLARF 425 (490)
T ss_pred HhhhhhhHhhhhheeccccccchhhHHHhccc---------ccccHHHHHhhcCCCccccchHHHHHHHHH
Confidence 99999999999999999999999887664444 356788899999999999999998776655
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.30 E-value=8.3e-12 Score=135.23 Aligned_cols=149 Identities=25% Similarity=0.261 Sum_probs=70.6
Q ss_pred CccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCCCC
Q 015448 20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRS 99 (406)
Q Consensus 20 ~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i~~ 99 (406)
+|+.|+|++|.|+.+|. .+++|+.|+|++|.|+.+|.+ ..+|+.|++++|.|+.+|.+. .+|+.|+|++|.|+.
T Consensus 283 ~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP~lp--~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPTLP--SGLQELSVSDNQLAS 356 (788)
T ss_pred hcCEEECcCCccccccc--cccccceeECCCCccccCCCC--cccccccccccCccccccccc--cccceEecCCCccCC
Confidence 44455555555555443 135677777777777666532 123444444444444444211 244444444444444
Q ss_pred CcCCC------------------CCCCCCEEEccCCccCCccccCCCCCCcEeeCC--------CCCCCCCEEEcCCCCC
Q 015448 100 MDDVT------------------SVVSLRALILNDNEIVSICKLDQMKELNTLGMD--------SYFFNLNNLNLQGNPV 153 (406)
Q Consensus 100 l~~l~------------------~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls--------~~l~~L~~L~Ls~N~i 153 (406)
+|.+. .+.+|+.|+|++|.|+.++.+ ..+|..|+|+ ..+.+|+.|+|++|.|
T Consensus 357 LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqL 434 (788)
T PRK15387 357 LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQL 434 (788)
T ss_pred CCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCCCcchhhhhhhhhccCcc
Confidence 43211 113455555555555554432 2344555554 1112455556666666
Q ss_pred CCchhHHHHHHhcCCCccccc--CcCCCh
Q 015448 154 AEYDKLAKKVKTLLPNLCIFN--ARPIDR 180 (406)
Q Consensus 154 ~~~~~~~~~~~~~lp~L~~Ld--~~~~~~ 180 (406)
+.+|. .+..+++|..|+ +++++.
T Consensus 435 t~LP~----sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 435 TRLPE----SLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred cccCh----HHhhccCCCeEECCCCCCCc
Confidence 55543 134456666444 444443
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=9.6e-14 Score=122.72 Aligned_cols=126 Identities=30% Similarity=0.400 Sum_probs=111.1
Q ss_pred CCCCCCCCCCCcEEEccCCCCCCCC-CCCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEcCCCCCCCCc-CCCCCCCC
Q 015448 33 DVSCLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNVGKNKLRSMD-DVTSVVSL 109 (406)
Q Consensus 33 ~i~~l~~l~~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L 109 (406)
.++.+-.+.+++.|.||+|.++.+| .+..+.+|+.|++.+|+|..+| .++.+++|+.|+++-|++..+| +|+.++.|
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 3456677889999999999999986 5999999999999999999999 7999999999999999999988 79999999
Q ss_pred CEEEccCCccCC--ccc-cCCCCCCcEeeCC-----------CCCCCCCEEEcCCCCCCCchh
Q 015448 110 RALILNDNEIVS--ICK-LDQMKELNTLGMD-----------SYFFNLNNLNLQGNPVAEYDK 158 (406)
Q Consensus 110 ~~L~Ls~N~i~~--l~~-l~~L~~L~~L~Ls-----------~~l~~L~~L~Ls~N~i~~~~~ 158 (406)
+.|+|++|++.. +|+ |..+..|+.|+|+ +.+++|+.|.+..|.+-.++.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk 167 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK 167 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH
Confidence 999999999864 554 7777888888887 788899999999998887764
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.27 E-value=1.9e-11 Score=132.55 Aligned_cols=145 Identities=27% Similarity=0.332 Sum_probs=98.0
Q ss_pred cccccccCCCCCCCCCCccEEEeeCCCCCCCCCCC--------------C---C-CCCcEEEccCCCCCCCCCCCCCCCC
Q 015448 4 LSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLT--------------D---F-NNLERLDLSSNNLTSLEGLKHCVNL 65 (406)
Q Consensus 4 Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~--------------~---l-~~L~~L~Ls~N~l~~l~~l~~L~~L 65 (406)
|+.|++..+.. .+++|+.|+|++|.|+.++.+. . + .+|++|+|++|.|+.+|.+ ..+|
T Consensus 289 Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l--p~~L 364 (788)
T PRK15387 289 IFGNQLTSLPV--LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL--PSEL 364 (788)
T ss_pred CcCCccccccc--cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC--Cccc
Confidence 44555554432 3467888888888887765211 0 1 2566666666666666543 2456
Q ss_pred cEEEecCCCCCCCCCCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC--------
Q 015448 66 KWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD-------- 137 (406)
Q Consensus 66 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls-------- 137 (406)
+.|++++|.|+.+|.+ ..+|+.|+|++|.|+.+|.+ .++|+.|++++|.|+.+|.+ +.+|+.|+|+
T Consensus 365 ~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP 438 (788)
T PRK15387 365 YKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLP 438 (788)
T ss_pred ceehhhccccccCccc--ccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccC
Confidence 6666666666666643 24688899999998888754 36799999999999888753 3456666666
Q ss_pred ---CCCCCCCEEEcCCCCCCCchh
Q 015448 138 ---SYFFNLNNLNLQGNPVAEYDK 158 (406)
Q Consensus 138 ---~~l~~L~~L~Ls~N~i~~~~~ 158 (406)
..+++|..|+|++|+++....
T Consensus 439 ~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 439 ESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred hHHhhccCCCeEECCCCCCCchHH
Confidence 457899999999999987543
No 13
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=99.27 E-value=2.5e-12 Score=116.24 Aligned_cols=160 Identities=23% Similarity=0.340 Sum_probs=110.8
Q ss_pred CCccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCC
Q 015448 1 MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80 (406)
Q Consensus 1 m~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~ 80 (406)
|++|+-+-+.+..+......=+.++|.+..+..+..++.+ +.+...++|++|.|..++.
T Consensus 1 m~klt~el~~q~pqy~~~~~e~e~~LR~lkip~ienlg~~---------------------~d~~d~iDLtdNdl~~l~~ 59 (233)
T KOG1644|consen 1 MVKLTAELIVQAPQYINSVRERELDLRGLKIPVIENLGAT---------------------LDQFDAIDLTDNDLRKLDN 59 (233)
T ss_pred CccccHHHHhhchhhhhhccccccccccccccchhhcccc---------------------ccccceecccccchhhccc
Confidence 6777777776666555555555666666655544432211 2334455555555555555
Q ss_pred CCCCCCCcEEEcCCCCCCCCc-CCC-CCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchh
Q 015448 81 IEGLSKPTVLNVGKNKLRSMD-DVT-SVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDK 158 (406)
Q Consensus 81 l~~l~~L~~L~Ls~N~i~~l~-~l~-~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~ 158 (406)
|..+++|.+|.|++|+|+.+. .+. .+++|..|.|.+|.|..+..+..+. .||.|++|.+-+|+++....
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa---------~~p~L~~Ltll~Npv~~k~~ 130 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA---------SCPKLEYLTLLGNPVEHKKN 130 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhc---------cCCccceeeecCCchhcccC
Confidence 555555555566666665553 233 3566777777777777766655553 67899999999999999999
Q ss_pred HHHHHHhcCCCcccccCcCCChhhhhhhhhhh
Q 015448 159 LAKKVKTLLPNLCIFNARPIDRITKNEKDNIV 190 (406)
Q Consensus 159 ~~~~~~~~lp~L~~Ld~~~~~~~~~~~~~~~l 190 (406)
|+.+++..+|+|++||...++..+|..+..+.
T Consensus 131 YR~yvl~klp~l~~LDF~kVt~~ER~~A~~~f 162 (233)
T KOG1644|consen 131 YRLYVLYKLPSLRTLDFQKVTRKEREEAEVFF 162 (233)
T ss_pred ceeEEEEecCcceEeehhhhhHHHHHHHHHHh
Confidence 99999999999999999999999999988777
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.25 E-value=7.2e-13 Score=141.17 Aligned_cols=154 Identities=27% Similarity=0.343 Sum_probs=125.8
Q ss_pred cccccccCCCCCCC-CCCccEEEeeCCCCCCCC--CC-------------------------CCCCCCcEEEccCCCCCC
Q 015448 4 LSTQQILKDNKTCD-PNSIKSLSLTHKALSDVS--CL-------------------------TDFNNLERLDLSSNNLTS 55 (406)
Q Consensus 4 Ls~n~i~~~~~~~~-~~~L~~L~Ls~n~l~~i~--~l-------------------------~~l~~L~~L~Ls~N~l~~ 55 (406)
+.+|++..+.+... +.+|++|+|..|.|..+| .+ ..++.|+.|+|.+|.+++
T Consensus 294 ~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 294 AAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred hhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence 34567777766555 788999999999887764 11 123457778888888886
Q ss_pred C--CCCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCccccCCCCC
Q 015448 56 L--EGLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSICKLDQMKE 130 (406)
Q Consensus 56 l--~~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~ 130 (406)
- |.|.++.+|+.|+|++|+|..+| .+..+..|+.|+||+|.++.+| .+..+..|++|...+|+|..+|.+..++.
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~q 453 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQ 453 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCc
Confidence 4 66888999999999999999999 3889999999999999999998 47888999999999999999999999999
Q ss_pred CcEeeCC------------CCCCCCCEEEcCCCCCCCch
Q 015448 131 LNTLGMD------------SYFFNLNNLNLQGNPVAEYD 157 (406)
Q Consensus 131 L~~L~Ls------------~~l~~L~~L~Ls~N~i~~~~ 157 (406)
|+++|++ ...++|++|+|+||....+.
T Consensus 454 L~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d 492 (1081)
T KOG0618|consen 454 LKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFD 492 (1081)
T ss_pred ceEEecccchhhhhhhhhhCCCcccceeeccCCcccccc
Confidence 9999999 23379999999999864444
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=8.1e-12 Score=112.71 Aligned_cols=125 Identities=25% Similarity=0.441 Sum_probs=44.5
Q ss_pred EccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC-CCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccc-
Q 015448 47 DLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE-GLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICK- 124 (406)
Q Consensus 47 ~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~-~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~- 124 (406)
.|..+.|...+.+.++..+++|+|.+|.|+.|..++ .+.+|+.|+|++|.|+.++++..++.|+.|++++|.|+.+..
T Consensus 3 ~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 3 RLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccc
Confidence 355667777777888888999999999999998887 588999999999999999999999999999999999999853
Q ss_pred cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccccc--CcCCChhhhh
Q 015448 125 LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN--ARPIDRITKN 184 (406)
Q Consensus 125 l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld--~~~~~~~~~~ 184 (406)
+.. .+|+|+.|+|++|.|..+..+. .+..||+|+.|+ ++|++....+
T Consensus 83 l~~-----------~lp~L~~L~L~~N~I~~l~~l~--~L~~l~~L~~L~L~~NPv~~~~~Y 131 (175)
T PF14580_consen 83 LDK-----------NLPNLQELYLSNNKISDLNELE--PLSSLPKLRVLSLEGNPVCEKKNY 131 (175)
T ss_dssp HHH-----------H-TT--EEE-TTS---SCCCCG--GGGG-TT--EEE-TT-GGGGSTTH
T ss_pred hHH-----------hCCcCCEEECcCCcCCChHHhH--HHHcCCCcceeeccCCcccchhhH
Confidence 321 3568999999999998876543 366899998664 6788755443
No 16
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=1.8e-12 Score=123.40 Aligned_cols=123 Identities=26% Similarity=0.385 Sum_probs=111.6
Q ss_pred CccccccccCCCCCCC-CCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCC-CCCCCCcEEEecCCCCCCCC
Q 015448 2 TRLSTQQILKDNKTCD-PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGL-KHCVNLKWLSLVQNKLQSLK 79 (406)
Q Consensus 2 ~~Ls~n~i~~~~~~~~-~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l-~~L~~L~~L~Ls~N~l~~l~ 79 (406)
++||.|.|..+..... .+.++.|++++|.|..+..+..+++|+.||||+|.++.+.++ ..|.|++.|.|+.|.|.++.
T Consensus 289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS 368 (490)
T KOG1259|consen 289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS 368 (490)
T ss_pred ccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh
Confidence 5899999999875544 789999999999999999999999999999999999999874 46889999999999999999
Q ss_pred CCCCCCCCcEEEcCCCCCCCCc---CCCCCCCCCEEEccCCccCCccc
Q 015448 80 GIEGLSKPTVLNVGKNKLRSMD---DVTSVVSLRALILNDNEIVSICK 124 (406)
Q Consensus 80 ~l~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~ 124 (406)
+++.+.+|..|++++|+|..+. .++++|.|++|.|.+|+|..++.
T Consensus 369 GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 369 GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 9999999999999999998864 68999999999999999987754
No 17
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.17 E-value=2.6e-13 Score=141.14 Aligned_cols=152 Identities=24% Similarity=0.283 Sum_probs=126.6
Q ss_pred CCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCC--CCCCCCCcEEEcCC
Q 015448 18 PNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGK 94 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~ 94 (406)
...|.+.++++|.+..+. ++.-++.|+.|+|++|.++....+..|+.|++|||++|.+..+|. ..++. |+.|+|.+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 346778889999998876 788899999999999999999999999999999999999999994 34444 99999999
Q ss_pred CCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCC-----C
Q 015448 95 NKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLP-----N 169 (406)
Q Consensus 95 N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp-----~ 169 (406)
|.++++-++.++.+|+.|+|++|-|.....+..|.. +..|+.|+|.|||+++-+.++..+...+. .
T Consensus 242 N~l~tL~gie~LksL~~LDlsyNll~~hseL~pLws---------Ls~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~ 312 (1096)
T KOG1859|consen 242 NALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWS---------LSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPV 312 (1096)
T ss_pred cHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHH---------HHHHHHHhhcCCccccCHHHHHHHHhHhccccCCc
Confidence 999999999999999999999999988777666543 34788999999999999998887766543 2
Q ss_pred cccccCcCCC
Q 015448 170 LCIFNARPID 179 (406)
Q Consensus 170 L~~Ld~~~~~ 179 (406)
=-.||+..+.
T Consensus 313 ~f~LDgk~l~ 322 (1096)
T KOG1859|consen 313 KFKLDGKALG 322 (1096)
T ss_pred ceEecceecc
Confidence 2256665444
No 18
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.16 E-value=3.7e-12 Score=130.23 Aligned_cols=153 Identities=31% Similarity=0.434 Sum_probs=118.6
Q ss_pred cccccccCC-CCCCCCCCccEEEeeCCCCCCCCC-CCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCC
Q 015448 4 LSTQQILKD-NKTCDPNSIKSLSLTHKALSDVSC-LTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI 81 (406)
Q Consensus 4 Ls~n~i~~~-~~~~~~~~L~~L~Ls~n~l~~i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l 81 (406)
+..|.|..+ ..+..+.+|..|++.+|.|..+.. +..|++|++|+|++|.|+.+.++..++.|+.|++++|.|..++++
T Consensus 79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~ 158 (414)
T KOG0531|consen 79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGL 158 (414)
T ss_pred cchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCC
Confidence 445666663 346778888899999999988886 888889999999999999988888888899999999999888888
Q ss_pred CCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCC--CCEEE
Q 015448 82 EGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFN--LNNLN 147 (406)
Q Consensus 82 ~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~--L~~L~ 147 (406)
..++.|+.|++++|.+..+.. +..+.+|+.+++.+|.+..+..+..+..+..+++. ..+.. |+.++
T Consensus 159 ~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~ 238 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELY 238 (414)
T ss_pred ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHh
Confidence 888889999999999888877 57888888888988888777655544444433333 12222 67788
Q ss_pred cCCCCCCCc
Q 015448 148 LQGNPVAEY 156 (406)
Q Consensus 148 Ls~N~i~~~ 156 (406)
+++|++...
T Consensus 239 l~~n~i~~~ 247 (414)
T KOG0531|consen 239 LSGNRISRS 247 (414)
T ss_pred cccCccccc
Confidence 888888765
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.16 E-value=2.9e-13 Score=133.00 Aligned_cols=142 Identities=23% Similarity=0.362 Sum_probs=77.3
Q ss_pred CCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEcC
Q 015448 17 DPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNVG 93 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 93 (406)
.+..+..|+..+|+++.+| .+..+..|..|++.+|.+..+++ .-++..|++|+...|-++.+| .++.+.+|..|+|.
T Consensus 135 ~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLR 214 (565)
T ss_pred HHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhh
Confidence 3455555566666665555 44455555555555555555542 222555555555555555555 35555555555555
Q ss_pred CCCCCCCcCCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC-----------CCCCCCCEEEcCCCCCCCchh
Q 015448 94 KNKLRSMDDVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD-----------SYFFNLNNLNLQGNPVAEYDK 158 (406)
Q Consensus 94 ~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls-----------~~l~~L~~L~Ls~N~i~~~~~ 158 (406)
.|.|..+|.|..+..|..|+++.|.|..++. +.++..|-+|||. .-+.+|.+|++++|.|+.++.
T Consensus 215 ~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 215 RNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPY 292 (565)
T ss_pred hcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCc
Confidence 5555555555555555555555555555443 3445555555554 234466677777777777664
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.14 E-value=5e-11 Score=129.51 Aligned_cols=170 Identities=19% Similarity=0.264 Sum_probs=87.9
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCCC
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLKG 80 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~~ 80 (406)
+|+.|.+..+. ...+.+|+.|+|++|.|..+| .+ ..+|+.|+|++|.|+.+|. + +.+|+.|+|++|.|+.+|.
T Consensus 226 ~Ls~N~LtsLP-~~l~~~L~~L~Ls~N~L~~LP~~l--~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 226 YANSNQLTSIP-ATLPDTIQEMELSINRITELPERL--PSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRTLPA 300 (754)
T ss_pred ECCCCccccCC-hhhhccccEEECcCCccCcCChhH--hCCCCEEECcCCccCcccccc--CCCCcEEECCCCccccCcc
Confidence 45555555443 233557778888888877776 33 2467777777777777654 3 2467777777777776652
Q ss_pred -CC-------------------CCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC---
Q 015448 81 -IE-------------------GLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD--- 137 (406)
Q Consensus 81 -l~-------------------~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls--- 137 (406)
+. ..++|+.|++++|.++.+|.. -.++|+.|+|++|.|+.+|. ...++|+.|+|+
T Consensus 301 ~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~L~~LP~-~lp~~L~~LdLs~N~ 378 (754)
T PRK15370 301 HLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPAS-LPPELQVLDVSKNQITVLPE-TLPPTITTLDVSRNA 378 (754)
T ss_pred cchhhHHHHHhcCCccccCCccccccceeccccCCccccCChh-hcCcccEEECCCCCCCcCCh-hhcCCcCEEECCCCc
Confidence 21 012444444444444444420 11355555555555554443 112345555554
Q ss_pred -CCC-----CCCCEEEcCCCCCCCchhHHHHHHhcCCCcccc--cCcCCC
Q 015448 138 -SYF-----FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF--NARPID 179 (406)
Q Consensus 138 -~~l-----~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~L--d~~~~~ 179 (406)
..+ ..|+.|++++|.+..++.....+...++.+..| +.+++.
T Consensus 379 Lt~LP~~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 379 LTNLPENLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCCCHhHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 011 134455555555555443222233334555533 345554
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.14 E-value=1.5e-10 Score=125.79 Aligned_cols=135 Identities=25% Similarity=0.277 Sum_probs=80.8
Q ss_pred CCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEcCC
Q 015448 17 DPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNVGK 94 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~ 94 (406)
.+..|+.|+|++|.|+.+|.- .+.+|++|+|++|.|+.+|. + ..+|+.|+|++|.|..+| .+. .+|+.|+|++
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATL--PDTIQEMELSINRITELPERLP--SALQSLDLFH 271 (754)
T ss_pred cccCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhh--hccccEEECcCCccCcCChhHh--CCCCEEECcC
Confidence 356788888888888877621 12477777887777777653 2 235666667666666666 232 3566666666
Q ss_pred CCCCCCcC-CCCCCCCCEEEccCCccCCccc-c-------------------CCCCCCcEeeCC---------CCCCCCC
Q 015448 95 NKLRSMDD-VTSVVSLRALILNDNEIVSICK-L-------------------DQMKELNTLGMD---------SYFFNLN 144 (406)
Q Consensus 95 N~i~~l~~-l~~l~~L~~L~Ls~N~i~~l~~-l-------------------~~L~~L~~L~Ls---------~~l~~L~ 144 (406)
|.|+.+|. + ..+|+.|+|++|.|+.++. + ...++|++|+++ .-.++|+
T Consensus 272 N~L~~LP~~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~ 349 (754)
T PRK15370 272 NKISCLPENL--PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQ 349 (754)
T ss_pred CccCcccccc--CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhcCccc
Confidence 66666553 2 1356666666666555432 1 012355555554 1224777
Q ss_pred EEEcCCCCCCCchh
Q 015448 145 NLNLQGNPVAEYDK 158 (406)
Q Consensus 145 ~L~Ls~N~i~~~~~ 158 (406)
.|+|++|.|..++.
T Consensus 350 ~L~Ls~N~L~~LP~ 363 (754)
T PRK15370 350 VLDVSKNQITVLPE 363 (754)
T ss_pred EEECCCCCCCcCCh
Confidence 77888777776653
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.10 E-value=5.5e-12 Score=123.83 Aligned_cols=122 Identities=30% Similarity=0.442 Sum_probs=99.3
Q ss_pred CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecC-CCCCCCC--CCCCCCCCc
Q 015448 16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQ-NKLQSLK--GIEGLSKPT 88 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~-N~l~~l~--~l~~l~~L~ 88 (406)
.-+...+.|.|..|.|+.|| +|+.+++|+.|||++|.|+.+. +|.++..|..|-+.+ |+|+.+| .|.+|..|+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 34667888999999999998 8999999999999999999884 488898888887776 9999999 488888888
Q ss_pred EEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC
Q 015448 89 VLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD 137 (406)
Q Consensus 89 ~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls 137 (406)
.|.+.-|.+..+. .+..+++|..|.+.+|.+..++. +..+.+++++.+.
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence 8888888888765 47788888888888888777764 6666666666554
No 23
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.10 E-value=9.2e-13 Score=129.47 Aligned_cols=167 Identities=22% Similarity=0.262 Sum_probs=123.1
Q ss_pred ccccccCCC-CCCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC-C
Q 015448 5 STQQILKDN-KTCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK-G 80 (406)
Q Consensus 5 s~n~i~~~~-~~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~-~ 80 (406)
++|.+..+. ..+...++..|++++|.+..++ .++.+..|..|+..+|+|+.+|+ +.++..|..|++.+|.+..+| .
T Consensus 99 s~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~ 178 (565)
T KOG0472|consen 99 SHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPEN 178 (565)
T ss_pred ccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHH
Confidence 334444443 2344556666677777766665 56666677777777777777763 666777777777777777766 3
Q ss_pred CCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC------------CCCCCCCEEE
Q 015448 81 IEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD------------SYFFNLNNLN 147 (406)
Q Consensus 81 l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls------------~~l~~L~~L~ 147 (406)
.-.+..|++|+...|.+..+| .++.+.+|.-|+|..|.|..+|.|..|..|..|.++ .++++|..|+
T Consensus 179 ~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 179 HIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence 444778888899888888887 588899999999999999999999999999988888 6889999999
Q ss_pred cCCCCCCCchhHHHHHHhcCCCcccccC
Q 015448 148 LQGNPVAEYDKLAKKVKTLLPNLCIFNA 175 (406)
Q Consensus 148 Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~ 175 (406)
|..|.+...|.- +..+.+|..||.
T Consensus 259 LRdNklke~Pde----~clLrsL~rLDl 282 (565)
T KOG0472|consen 259 LRDNKLKEVPDE----ICLLRSLERLDL 282 (565)
T ss_pred ccccccccCchH----HHHhhhhhhhcc
Confidence 999999998863 233555555553
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=6.9e-11 Score=119.66 Aligned_cols=158 Identities=28% Similarity=0.388 Sum_probs=108.4
Q ss_pred CCCCCCCccEEEeeCCCCCCCCCCCCCC--CCcEEEccCCCCCCCC-CCCCCCCCcEEEecCCCCCCCCCCC-CCCCCcE
Q 015448 14 KTCDPNSIKSLSLTHKALSDVSCLTDFN--NLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQNKLQSLKGIE-GLSKPTV 89 (406)
Q Consensus 14 ~~~~~~~L~~L~Ls~n~l~~i~~l~~l~--~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N~l~~l~~l~-~l~~L~~ 89 (406)
.....+.++.|++.+|.++.++....+. +|+.|++++|.+..++ .+..+++|+.|++++|.+..++... .++.|+.
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 3344567788888888888887443333 7888888888888874 6777888888888888888887543 7778888
Q ss_pred EEcCCCCCCCCcCC-CCCCCCCEEEccCCc-cCCccccCCCCCCcEeeCC-----------CCCCCCCEEEcCCCCCCCc
Q 015448 90 LNVGKNKLRSMDDV-TSVVSLRALILNDNE-IVSICKLDQMKELNTLGMD-----------SYFFNLNNLNLQGNPVAEY 156 (406)
Q Consensus 90 L~Ls~N~i~~l~~l-~~l~~L~~L~Ls~N~-i~~l~~l~~L~~L~~L~Ls-----------~~l~~L~~L~Ls~N~i~~~ 156 (406)
|++++|.+..+|.. ..+..|..|.+++|. +..+..+..+.++..|.+. ..+++|+.|++++|.++.+
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccc
Confidence 88888888887754 355558888888884 3433345555555555443 4566678888888888777
Q ss_pred hhHHHHHHhcCCCcccccCc
Q 015448 157 DKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 157 ~~~~~~~~~~lp~L~~Ld~~ 176 (406)
+. +..+.+|+.|+..
T Consensus 271 ~~-----~~~~~~l~~L~~s 285 (394)
T COG4886 271 SS-----LGSLTNLRELDLS 285 (394)
T ss_pred cc-----ccccCccCEEecc
Confidence 64 3445666655544
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=5.7e-12 Score=128.51 Aligned_cols=154 Identities=30% Similarity=0.381 Sum_probs=103.8
Q ss_pred ccccccccCCC-CCCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC
Q 015448 3 RLSTQQILKDN-KTCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK 79 (406)
Q Consensus 3 ~Ls~n~i~~~~-~~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~ 79 (406)
+|+-|....+. ..+.+..|..|.|.+|+|..++ ++.++..|++|+|+.|+++.+|. ++.|+ |+.|.+++|+++.+|
T Consensus 81 DlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp 159 (722)
T KOG0532|consen 81 DLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLP 159 (722)
T ss_pred hccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCC
Confidence 44444444443 3344566677777777777776 66777777777777777777764 55443 777777777777777
Q ss_pred -CCCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCccc-cCCCCCCcEeeCC-----------CCCCCCCE
Q 015448 80 -GIEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMD-----------SYFFNLNN 145 (406)
Q Consensus 80 -~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls-----------~~l~~L~~ 145 (406)
.++.++.|..|+.+.|.|.++| .++++.+|+.|.+..|++..++. +..| .|..||++ ..|..|++
T Consensus 160 ~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 160 EEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQV 238 (722)
T ss_pred cccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhhee
Confidence 5777777777777777777766 47777777777777777777664 4433 35555555 56667777
Q ss_pred EEcCCCCCCCchh
Q 015448 146 LNLQGNPVAEYDK 158 (406)
Q Consensus 146 L~Ls~N~i~~~~~ 158 (406)
|-|.+||+...+.
T Consensus 239 l~LenNPLqSPPA 251 (722)
T KOG0532|consen 239 LQLENNPLQSPPA 251 (722)
T ss_pred eeeccCCCCCChH
Confidence 7777777766553
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.04 E-value=1.9e-09 Score=123.34 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=35.9
Q ss_pred CCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCC-CCCCCCCCCCCCCcEEEecCCC-CCCCC-CCCCCCCCcEEEcCC
Q 015448 19 NSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNN-LTSLEGLKHCVNLKWLSLVQNK-LQSLK-GIEGLSKPTVLNVGK 94 (406)
Q Consensus 19 ~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~L~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~ 94 (406)
.+|+.|+|.+|.|..++ .+..+++|+.|+|+++. +..+|.+..+++|+.|+|++|. +..+| .+..+++|+.|+|++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 44444555544444443 34444555555554432 3444444445555555554432 33444 344444555555544
Q ss_pred C
Q 015448 95 N 95 (406)
Q Consensus 95 N 95 (406)
|
T Consensus 691 c 691 (1153)
T PLN03210 691 C 691 (1153)
T ss_pred C
Confidence 3
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.03 E-value=4.8e-12 Score=135.00 Aligned_cols=112 Identities=22% Similarity=0.279 Sum_probs=61.2
Q ss_pred CcEEEecCCCCCC--CCCCCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc-cCCCCCCcEeeCC--
Q 015448 65 LKWLSLVQNKLQS--LKGIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMD-- 137 (406)
Q Consensus 65 L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls-- 137 (406)
|+.|++.+|.+++ +|.+.++.+|++|+|++|+|..+|+ +..+..|++|+||+|.++.++. +..|..|++|...
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC
Confidence 3344444444442 3344455555555555555555552 4455555555555555555553 4444555554443
Q ss_pred --------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCCC
Q 015448 138 --------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPID 179 (406)
Q Consensus 138 --------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~~ 179 (406)
..++.|+.++|+.|.++...-.. ..--|+|++||....+
T Consensus 441 ~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~---~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 441 QLLSFPELAQLPQLKVLDLSCNNLSEVTLPE---ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ceeechhhhhcCcceEEecccchhhhhhhhh---hCCCcccceeeccCCc
Confidence 56778888888888886653211 0112688888765544
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.03 E-value=2.3e-09 Score=122.71 Aligned_cols=141 Identities=16% Similarity=0.235 Sum_probs=116.6
Q ss_pred CCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCC-CCCCCCCCcEEEecCC-CCCCCCCCCCCCCCcEEEcCCC
Q 015448 18 PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQN-KLQSLKGIEGLSKPTVLNVGKN 95 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N 95 (406)
+..|+.|++.++.+..+|.--.+.+|+.|+|++|.|..++ ++..+++|+.|+|++| .+..+|.+..+++|+.|+|++|
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC 667 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCC
Confidence 4578899999998888884336789999999999999885 4888999999999976 4778888889999999999987
Q ss_pred C-CCCCc-CCCCCCCCCEEEccCC-ccCCccccCCCCCCcEeeCC---------CCCCCCCEEEcCCCCCCCchh
Q 015448 96 K-LRSMD-DVTSVVSLRALILNDN-EIVSICKLDQMKELNTLGMD---------SYFFNLNNLNLQGNPVAEYDK 158 (406)
Q Consensus 96 ~-i~~l~-~l~~l~~L~~L~Ls~N-~i~~l~~l~~L~~L~~L~Ls---------~~l~~L~~L~Ls~N~i~~~~~ 158 (406)
. +..+| .+..+++|+.|++++| .+..+|....+++|+.|+|+ ....+|+.|+|++|.+..++.
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPS 742 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccc
Confidence 5 66677 5788999999999986 57777765578899999887 223578999999999887764
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=1.2e-10 Score=117.92 Aligned_cols=157 Identities=26% Similarity=0.364 Sum_probs=130.5
Q ss_pred CccccccccCCCCCCCCC--CccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCCCC-CCCCCcEEEecCCCCCC
Q 015448 2 TRLSTQQILKDNKTCDPN--SIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEGLK-HCVNLKWLSLVQNKLQS 77 (406)
Q Consensus 2 ~~Ls~n~i~~~~~~~~~~--~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~l~-~L~~L~~L~Ls~N~l~~ 77 (406)
.++..+.|.++.+...+. +|+.|++++|.+..++ .+..+++|+.|++++|.++.++... .+++|+.|++++|.++.
T Consensus 121 L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~ 200 (394)
T COG4886 121 LDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD 200 (394)
T ss_pred EecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCcccc
Confidence 456778888888766654 8999999999999995 8899999999999999999998755 89999999999999999
Q ss_pred CCCC-CCCCCCcEEEcCCCC-CCCCcCCCCCCCCCEEEccCCccCCcc-ccCCCCCCcEeeCC----------CCCCCCC
Q 015448 78 LKGI-EGLSKPTVLNVGKNK-LRSMDDVTSVVSLRALILNDNEIVSIC-KLDQMKELNTLGMD----------SYFFNLN 144 (406)
Q Consensus 78 l~~l-~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls~N~i~~l~-~l~~L~~L~~L~Ls----------~~l~~L~ 144 (406)
+|.. ..+..|+.|.+++|. +..+..+..+..+..|.+.+|++..++ .+..+++|++|+++ ..+.+|+
T Consensus 201 l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~ 280 (394)
T COG4886 201 LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLR 280 (394)
T ss_pred CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccccccccCccC
Confidence 9964 566669999999995 444556778888888888888887743 47777788888888 5678999
Q ss_pred EEEcCCCCCCCchh
Q 015448 145 NLNLQGNPVAEYDK 158 (406)
Q Consensus 145 ~L~Ls~N~i~~~~~ 158 (406)
.|++++|.+.....
T Consensus 281 ~L~~s~n~~~~~~~ 294 (394)
T COG4886 281 ELDLSGNSLSNALP 294 (394)
T ss_pred EEeccCccccccch
Confidence 99999999987754
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5.8e-11 Score=117.98 Aligned_cols=165 Identities=22% Similarity=0.240 Sum_probs=118.1
Q ss_pred CCCccEEEeeCCCCCCCC---CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC---CCCCCCCCcE
Q 015448 18 PNSIKSLSLTHKALSDVS---CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK---GIEGLSKPTV 89 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i~---~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~---~l~~l~~L~~ 89 (406)
+++|+.|.|+.|+|+.-. .+..||+|..|+|.+|....+. ....+..|+.|+|++|++-+.+ -++.++.|..
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 566777777777776432 4556777788888777422221 2445677888888888887666 3677888888
Q ss_pred EEcCCCCCCCCc--CC------CCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhH-H
Q 015448 90 LNVGKNKLRSMD--DV------TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKL-A 160 (406)
Q Consensus 90 L~Ls~N~i~~l~--~l------~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~-~ 160 (406)
|+++.|.|.++. .. ..+++|++|++..|+|..++.+.++. .+++|..|.+.+|.+...... .
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~---------~l~nlk~l~~~~n~ln~e~~~a~ 346 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR---------TLENLKHLRITLNYLNKETDTAK 346 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh---------ccchhhhhhccccccccccccee
Confidence 888888888753 22 45678888888888888888777665 456888888888888665431 2
Q ss_pred HHHHhcCCCcccccCcCCChhhhhhhhhhhc
Q 015448 161 KKVKTLLPNLCIFNARPIDRITKNEKDNIVD 191 (406)
Q Consensus 161 ~~~~~~lp~L~~Ld~~~~~~~~~~~~~~~l~ 191 (406)
..++..+++|..||...+...+|..++..+.
T Consensus 347 ~~VIAr~~~l~~LN~~di~p~eRR~AEl~~~ 377 (505)
T KOG3207|consen 347 LLVIARISQLVKLNDVDISPNERRDAELYYL 377 (505)
T ss_pred EEeeeehhhhhhhcccccChHHhhhhhhhHH
Confidence 2367788899999999998888887775543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.5e-11 Score=118.78 Aligned_cols=165 Identities=21% Similarity=0.273 Sum_probs=116.6
Q ss_pred CCCCccEEEeeCCCCCCCC----CCCCCCCCcEEEccCCCCCCCCC---CCCCCCCcEEEecCCCCCC--CC-CCCCCCC
Q 015448 17 DPNSIKSLSLTHKALSDVS----CLTDFNNLERLDLSSNNLTSLEG---LKHCVNLKWLSLVQNKLQS--LK-GIEGLSK 86 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~l~~i~----~l~~l~~L~~L~Ls~N~l~~l~~---l~~L~~L~~L~Ls~N~l~~--l~-~l~~l~~ 86 (406)
.+++++.|+|++|-|..+. .+..||+|+.|+|+.|.+..... -..+++|+.|.|+.|.|+. +. -+..+|+
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 4788899999998887763 55688999999999998875421 2357888888898888873 22 2556777
Q ss_pred CcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc---cCCCCCCcEeeCC------------------CCCCCC
Q 015448 87 PTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK---LDQMKELNTLGMD------------------SYFFNL 143 (406)
Q Consensus 87 L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~---l~~L~~L~~L~Ls------------------~~l~~L 143 (406)
|..|+|..|....+. ....+..|+.|+|++|++-.++. +..++.|..|+++ ..+++|
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 788888777422221 23456678888888887766552 5667777777666 578899
Q ss_pred CEEEcCCCCCCCchhHHHHHHhcCCCccccc--CcCCChhhh
Q 015448 144 NNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN--ARPIDRITK 183 (406)
Q Consensus 144 ~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld--~~~~~~~~~ 183 (406)
++|++..|+|.+++.+. -+..+++|..|. ++++.....
T Consensus 304 ~~L~i~~N~I~~w~sl~--~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 304 EYLNISENNIRDWRSLN--HLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred eeeecccCccccccccc--hhhccchhhhhhccccccccccc
Confidence 99999999998887644 245677777665 566654444
No 32
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.97 E-value=5.2e-11 Score=121.81 Aligned_cols=157 Identities=24% Similarity=0.359 Sum_probs=127.8
Q ss_pred CccccccccCCCC-CCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCC
Q 015448 2 TRLSTQQILKDNK-TCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80 (406)
Q Consensus 2 ~~Ls~n~i~~~~~-~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~ 80 (406)
+.|..|+|..+.. ...+.+|++|+|++|.|+.+..+..++.|+.|++++|.|+.++.+..+..|+.+++++|.+..++.
T Consensus 100 l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 100 LDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred eeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhh
Confidence 4677889999988 888999999999999999999999999999999999999999999999999999999999999987
Q ss_pred --CCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCC--CcEeeCC-----------CCCCCCCE
Q 015448 81 --IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKE--LNTLGMD-----------SYFFNLNN 145 (406)
Q Consensus 81 --l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~--L~~L~Ls-----------~~l~~L~~ 145 (406)
+..+.+|+.+.+.+|.+..+..+..+..+..+++..|.|+.+.++..+.. |+.|+++ ..+..+..
T Consensus 180 ~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~ 259 (414)
T KOG0531|consen 180 DELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPV 259 (414)
T ss_pred hhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccc
Confidence 58899999999999999887666555556666777777666655444444 5555555 24567777
Q ss_pred EEcCCCCCCCchh
Q 015448 146 LNLQGNPVAEYDK 158 (406)
Q Consensus 146 L~Ls~N~i~~~~~ 158 (406)
|++..|.+.....
T Consensus 260 l~~~~n~~~~~~~ 272 (414)
T KOG0531|consen 260 LDLSSNRISNLEG 272 (414)
T ss_pred cchhhcccccccc
Confidence 7888887766653
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.94 E-value=2.3e-11 Score=119.56 Aligned_cols=179 Identities=25% Similarity=0.303 Sum_probs=124.9
Q ss_pred CccccccccCCCC--CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccC-CCCCCCCC--CC--------------
Q 015448 2 TRLSTQQILKDNK--TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSS-NNLTSLEG--LK-------------- 60 (406)
Q Consensus 2 ~~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~-N~l~~l~~--l~-------------- 60 (406)
++|..|+|..+.+ +..+.+|+.|+|++|.|+.|. +|.+++.|..|-+-+ |.|+.++. |.
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 5788899998875 456899999999999999995 888999888776655 88988752 33
Q ss_pred ----------CCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCC-------------------------------
Q 015448 61 ----------HCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKL------------------------------- 97 (406)
Q Consensus 61 ----------~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i------------------------------- 97 (406)
.|++|..|.+..|.+..++ .|..+..++++.+..|.+
T Consensus 152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl 231 (498)
T KOG4237|consen 152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRL 231 (498)
T ss_pred hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHH
Confidence 4556666666666666555 255555555555544430
Q ss_pred -----CC--------------------------Cc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC-----
Q 015448 98 -----RS--------------------------MD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD----- 137 (406)
Q Consensus 98 -----~~--------------------------l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls----- 137 (406)
.. .| .|..+++|+.|+|++|.|+.+.. |..+..|+.|.|.
T Consensus 232 ~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~ 311 (498)
T KOG4237|consen 232 YYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE 311 (498)
T ss_pred HHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH
Confidence 00 01 14556788888888888888763 7778888888877
Q ss_pred -------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccccc--CcCCChhhh
Q 015448 138 -------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN--ARPIDRITK 183 (406)
Q Consensus 138 -------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld--~~~~~~~~~ 183 (406)
.++..|..|+|.+|+|+++.+.. +..+..|..|+ .+|+....+
T Consensus 312 ~v~~~~f~~ls~L~tL~L~~N~it~~~~~a---F~~~~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 312 FVSSGMFQGLSGLKTLSLYDNQITTVAPGA---FQTLFSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred HHHHHhhhccccceeeeecCCeeEEEeccc---ccccceeeeeehccCcccCccc
Confidence 67888999999999999886644 44555555444 345444433
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.92 E-value=1.1e-09 Score=106.92 Aligned_cols=138 Identities=28% Similarity=0.351 Sum_probs=69.3
Q ss_pred CCCccEEEeeCCCCCCC--------CCCCCCCCCcEEEccCCCCCCCC--CCCCC---CCCcEEEecCCCCCC-----CC
Q 015448 18 PNSIKSLSLTHKALSDV--------SCLTDFNNLERLDLSSNNLTSLE--GLKHC---VNLKWLSLVQNKLQS-----LK 79 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i--------~~l~~l~~L~~L~Ls~N~l~~l~--~l~~L---~~L~~L~Ls~N~l~~-----l~ 79 (406)
.++++.|+++++.+... ..+..+++|+.|+|++|.+.... .+..+ ++|+.|++++|.+.. +.
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 34456666666555421 13344556666666666654321 12112 336666666665552 11
Q ss_pred -CCCCC-CCCcEEEcCCCCCCC-----Cc-CCCCCCCCCEEEccCCccCCc-----c-ccCCCCCCcEeeCC--------
Q 015448 80 -GIEGL-SKPTVLNVGKNKLRS-----MD-DVTSVVSLRALILNDNEIVSI-----C-KLDQMKELNTLGMD-------- 137 (406)
Q Consensus 80 -~l~~l-~~L~~L~Ls~N~i~~-----l~-~l~~l~~L~~L~Ls~N~i~~l-----~-~l~~L~~L~~L~Ls-------- 137 (406)
.+..+ ++|+.|+|++|.++. +. .+..+++|++|+|++|.++.- . .+..+++|+.|+|+
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence 23344 556666666666552 11 233445566666666655421 1 12333455555555
Q ss_pred --------CCCCCCCEEEcCCCCCCC
Q 015448 138 --------SYFFNLNNLNLQGNPVAE 155 (406)
Q Consensus 138 --------~~l~~L~~L~Ls~N~i~~ 155 (406)
..+++|++|++++|++..
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCcCch
Confidence 345567777777776665
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.90 E-value=1.1e-09 Score=106.76 Aligned_cols=166 Identities=23% Similarity=0.305 Sum_probs=115.9
Q ss_pred CCCCccEEEeeCCCCCCCC--CCCCC---CCCcEEEccCCCCCCC------CCCCCC-CCCcEEEecCCCCCC-----CC
Q 015448 17 DPNSIKSLSLTHKALSDVS--CLTDF---NNLERLDLSSNNLTSL------EGLKHC-VNLKWLSLVQNKLQS-----LK 79 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~l~~i~--~l~~l---~~L~~L~Ls~N~l~~l------~~l~~L-~~L~~L~Ls~N~l~~-----l~ 79 (406)
.+++|+.|+|++|.+.... .+..+ ++|++|+|++|.++.. ..+..+ ++|+.|+|++|.++. +.
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 3678999999999887432 22222 5599999999988742 124556 889999999999882 22
Q ss_pred -CCCCCCCCcEEEcCCCCCCC-----Cc-CCCCCCCCCEEEccCCccCCcc------ccCCCCCCcEeeCC---------
Q 015448 80 -GIEGLSKPTVLNVGKNKLRS-----MD-DVTSVVSLRALILNDNEIVSIC------KLDQMKELNTLGMD--------- 137 (406)
Q Consensus 80 -~l~~l~~L~~L~Ls~N~i~~-----l~-~l~~l~~L~~L~Ls~N~i~~l~------~l~~L~~L~~L~Ls--------- 137 (406)
.+..+++|++|+|++|.++. ++ .+..+++|++|+|++|.++... .+..+++|++|+++
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 36677889999999998874 11 3455678999999999886432 25667889999988
Q ss_pred ----CC----CCCCCEEEcCCCCCCCchhHH-HHHHhcCCCcccccCcC--CChhh
Q 015448 138 ----SY----FFNLNNLNLQGNPVAEYDKLA-KKVKTLLPNLCIFNARP--IDRIT 182 (406)
Q Consensus 138 ----~~----l~~L~~L~Ls~N~i~~~~~~~-~~~~~~lp~L~~Ld~~~--~~~~~ 182 (406)
.. .+.|++|++++|.++...... ...+..+++|+.++... +....
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 11 379999999999997543211 12345567888777554 44443
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.89 E-value=1.7e-10 Score=117.94 Aligned_cols=132 Identities=28% Similarity=0.360 Sum_probs=98.1
Q ss_pred cccccccCCC-CCCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCC-CCCCCCCCcEEEecCCCCCCCC-
Q 015448 4 LSTQQILKDN-KTCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQNKLQSLK- 79 (406)
Q Consensus 4 Ls~n~i~~~~-~~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N~l~~l~- 79 (406)
|..|.|..+. ..+.+..|+.|+|+.|.++.+| .+..| -|++|.+++|.++.+| .++.++.|..|+.+.|.|.++|
T Consensus 105 Ly~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slps 183 (722)
T KOG0532|consen 105 LYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS 183 (722)
T ss_pred HHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchH
Confidence 3455555553 4566788888888888888887 44433 4788888888888886 4777788888888888888888
Q ss_pred CCCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCccc-cCCCCCCcEeeCC
Q 015448 80 GIEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMD 137 (406)
Q Consensus 80 ~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls 137 (406)
.++.+.+|+.|++..|.+..+| .+..| .|..||++.|+|+.+|. |..|+.|++|-|.
T Consensus 184 ql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 184 QLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred HhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeec
Confidence 5778888888888888877776 35533 47778888888888774 7777888877775
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=1.5e-09 Score=103.67 Aligned_cols=174 Identities=22% Similarity=0.301 Sum_probs=123.9
Q ss_pred CCCccEEEeeCCCCCCCC----CCCCCCCCcEEEccCCCCCCC-CCC-CCCCCCcEEEecCCCCCC--CC-CCCCCCCCc
Q 015448 18 PNSIKSLSLTHKALSDVS----CLTDFNNLERLDLSSNNLTSL-EGL-KHCVNLKWLSLVQNKLQS--LK-GIEGLSKPT 88 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i~----~l~~l~~L~~L~Ls~N~l~~l-~~l-~~L~~L~~L~Ls~N~l~~--l~-~l~~l~~L~ 88 (406)
.+.++.|+|.+|.|++++ .+.++|.|++|+|+.|.+... ..+ ..+.+|++|-|.+..+.- .. .+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 467888999999999875 567899999999999988753 233 357789999998887752 22 366677777
Q ss_pred EEEcCCCCCCCC----------c-C---C-----------------CCCCCCCEEEccCCccCCccc---cCCCCCCcEe
Q 015448 89 VLNVGKNKLRSM----------D-D---V-----------------TSVVSLRALILNDNEIVSICK---LDQMKELNTL 134 (406)
Q Consensus 89 ~L~Ls~N~i~~l----------~-~---l-----------------~~l~~L~~L~Ls~N~i~~l~~---l~~L~~L~~L 134 (406)
.|.++.|.+..+ . . + .-++++..+.+..|+|..... ...++.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 777777744321 0 0 0 123556666666666655442 5556666677
Q ss_pred eCC-------------CCCCCCCEEEcCCCCCCCc---hhHHHHHHhcCCCcccccCcCCChhhhhhhhhhhc
Q 015448 135 GMD-------------SYFFNLNNLNLQGNPVAEY---DKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVD 191 (406)
Q Consensus 135 ~Ls-------------~~l~~L~~L~Ls~N~i~~~---~~~~~~~~~~lp~L~~Ld~~~~~~~~~~~~~~~l~ 191 (406)
+|+ ..++.|..|.++.||+.+. ..-+..++.+++++++||+..++..++...+..+-
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dSEr~fV 302 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDSERRFV 302 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccchhhhhhhHHHHH
Confidence 776 7899999999999999764 12223367899999999999999888887776554
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.63 E-value=1.7e-08 Score=98.23 Aligned_cols=160 Identities=20% Similarity=0.236 Sum_probs=94.8
Q ss_pred CCccEEEeeCCCCCC--CC----CCCCCCCCcEEEccCCCCCCCC---------------CCCCCCCCcEEEecCCCCCC
Q 015448 19 NSIKSLSLTHKALSD--VS----CLTDFNNLERLDLSSNNLTSLE---------------GLKHCVNLKWLSLVQNKLQS 77 (406)
Q Consensus 19 ~~L~~L~Ls~n~l~~--i~----~l~~l~~L~~L~Ls~N~l~~l~---------------~l~~L~~L~~L~Ls~N~l~~ 77 (406)
+.|+.|+||.|.|.. ++ .+..+..|++|.|++|.+.... -...-+.|+++...+|++.+
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 367777777777643 22 3456677777777777765431 13345667777777777765
Q ss_pred CC------CCCCCCCCcEEEcCCCCCCC--C----cCCCCCCCCCEEEccCCccCCcc------ccCCCCCCcEeeCC--
Q 015448 78 LK------GIEGLSKPTVLNVGKNKLRS--M----DDVTSVVSLRALILNDNEIVSIC------KLDQMKELNTLGMD-- 137 (406)
Q Consensus 78 l~------~l~~l~~L~~L~Ls~N~i~~--l----~~l~~l~~L~~L~Ls~N~i~~l~------~l~~L~~L~~L~Ls-- 137 (406)
-+ .|..++.|+.+.++.|.|.. + ..+.++++|+.|+|.+|-++.-. .+..++.|+.|+++
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 43 25566677777777777654 1 24667777777777777665432 15555666666665
Q ss_pred ---------------CCCCCCCEEEcCCCCCCCchhHH-HHHHhcCCCcccccCcCC
Q 015448 138 ---------------SYFFNLNNLNLQGNPVAEYDKLA-KKVKTLLPNLCIFNARPI 178 (406)
Q Consensus 138 ---------------~~l~~L~~L~Ls~N~i~~~~~~~-~~~~~~lp~L~~Ld~~~~ 178 (406)
...|+|+.|.|.+|.|+...... ...+...|.|..|+.+.+
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 34666677777776665543221 112334566665554443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.60 E-value=2.9e-08 Score=73.62 Aligned_cols=53 Identities=36% Similarity=0.508 Sum_probs=20.5
Q ss_pred CcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCC
Q 015448 43 LERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKN 95 (406)
Q Consensus 43 L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N 95 (406)
|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++ .|..+++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 334444444443333 1333444444444444443333 1333333444443333
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.58 E-value=3.8e-08 Score=72.96 Aligned_cols=57 Identities=30% Similarity=0.447 Sum_probs=45.9
Q ss_pred CCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCcc
Q 015448 63 VNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEI 119 (406)
Q Consensus 63 ~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i 119 (406)
++|++|+|++|.|+.+| .|..+++|++|+|++|.|+.++ .+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 56888888888888887 4778888888888888888875 377888888888888865
No 41
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=4.9e-09 Score=99.29 Aligned_cols=117 Identities=26% Similarity=0.304 Sum_probs=97.3
Q ss_pred CCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCC
Q 015448 62 CVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFF 141 (406)
Q Consensus 62 L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~ 141 (406)
|.+.+.|++-+|.|.+|.-+..|+.|++|.|+-|.|+++..+..++.|..|.|..|.|.++..+..|. ++|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLk---------nlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLK---------NLP 88 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHh---------cCc
Confidence 55667788888888887777788888888888888888888888888999999999888877666554 567
Q ss_pred CCCEEEcCCCCCCCc--hhHHHHHHhcCCCcccccCcCCChhhhhhhh
Q 015448 142 NLNNLNLQGNPVAEY--DKLAKKVKTLLPNLCIFNARPIDRITKNEKD 187 (406)
Q Consensus 142 ~L~~L~Ls~N~i~~~--~~~~~~~~~~lp~L~~Ld~~~~~~~~~~~~~ 187 (406)
+|+.|.|..||.+.- ..|+..++..||+|+.||..+++..+-..+.
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~AL 136 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEAL 136 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHH
Confidence 999999999998654 6789999999999999999999987766554
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.50 E-value=2.8e-09 Score=111.64 Aligned_cols=155 Identities=25% Similarity=0.312 Sum_probs=111.5
Q ss_pred CCCccEEEeeCCCCCCCCCC---------------------------C------CCCCCcEEEccCCCCCCCC-CCCCCC
Q 015448 18 PNSIKSLSLTHKALSDVSCL---------------------------T------DFNNLERLDLSSNNLTSLE-GLKHCV 63 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i~~l---------------------------~------~l~~L~~L~Ls~N~l~~l~-~l~~L~ 63 (406)
+..|++|.|.++.|.....+ + .+..|.+.++++|.+..+. .+.-++
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ 187 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLP 187 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHH
Confidence 67899999999887543111 1 1223556667777777664 466778
Q ss_pred CCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCCCCCcCCCCC-CCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCC
Q 015448 64 NLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSV-VSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFN 142 (406)
Q Consensus 64 ~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~l-~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~ 142 (406)
.|+.|+|++|+++.+..+..|+.|.+|+|++|.++.+|.+..- ..|..|+|++|.++.+.++.+|. +
T Consensus 188 ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~Lk------------s 255 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLK------------S 255 (1096)
T ss_pred HhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhh------------h
Confidence 8888999999888888888888899999999988888865421 24888889998888877766554 7
Q ss_pred CCEEEcCCCCCCCchhHHHHHHhcCCCcc--cccCcCCChhhhhhh
Q 015448 143 LNNLNLQGNPVAEYDKLAKKVKTLLPNLC--IFNARPIDRITKNEK 186 (406)
Q Consensus 143 L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~--~Ld~~~~~~~~~~~~ 186 (406)
|..|+|+.|-|.....+. .+..+..|. .|.++|+.+.+...+
T Consensus 256 L~~LDlsyNll~~hseL~--pLwsLs~L~~L~LeGNPl~c~p~hRa 299 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELE--PLWSLSSLIVLWLEGNPLCCAPWHRA 299 (1096)
T ss_pred hhccchhHhhhhcchhhh--HHHHHHHHHHHhhcCCccccCHHHHH
Confidence 788999999998776543 244455555 467888876665544
No 43
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.48 E-value=8.1e-08 Score=90.39 Aligned_cols=114 Identities=26% Similarity=0.368 Sum_probs=83.6
Q ss_pred CCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCC--CCCC-Cc-CCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC
Q 015448 62 CVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKN--KLRS-MD-DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137 (406)
Q Consensus 62 L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N--~i~~-l~-~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls 137 (406)
+..|+.|.+.+..++++.++..|++|+.|.++.| ++.. ++ -...+++|++|+|++|.|..+..+..++
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~-------- 113 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK-------- 113 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh--------
Confidence 4455555566666666666666777777777777 3322 33 2344588888888888888766666665
Q ss_pred CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCCChhhhh
Q 015448 138 SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKN 184 (406)
Q Consensus 138 ~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~~~~~~~ 184 (406)
.+.+|..|++..|..+....|+..++..+|+|.+||+..+...+..
T Consensus 114 -~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~ 159 (260)
T KOG2739|consen 114 -ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAP 159 (260)
T ss_pred -hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcccc
Confidence 3458899999999999999999999999999999999887755544
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.44 E-value=6.5e-08 Score=94.23 Aligned_cols=138 Identities=25% Similarity=0.325 Sum_probs=82.8
Q ss_pred CCCCCCCcEEEccCCCCCCC--CC----CCCCCCCcEEEecCCCCCCCC---------------CCCCCCCCcEEEcCCC
Q 015448 37 LTDFNNLERLDLSSNNLTSL--EG----LKHCVNLKWLSLVQNKLQSLK---------------GIEGLSKPTVLNVGKN 95 (406)
Q Consensus 37 l~~l~~L~~L~Ls~N~l~~l--~~----l~~L~~L~~L~Ls~N~l~~l~---------------~l~~l~~L~~L~Ls~N 95 (406)
|..++.|++|+||.|.|..- ++ +..+..|++|+|++|.+.... -.+.-+.|+++..++|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 34566777777777766532 22 455677777777777665321 1334456777777777
Q ss_pred CCCCCc------CCCCCCCCCEEEccCCccCCcc------ccCCCCCCcEeeCC----------------CCCCCCCEEE
Q 015448 96 KLRSMD------DVTSVVSLRALILNDNEIVSIC------KLDQMKELNTLGMD----------------SYFFNLNNLN 147 (406)
Q Consensus 96 ~i~~l~------~l~~l~~L~~L~Ls~N~i~~l~------~l~~L~~L~~L~Ls----------------~~l~~L~~L~ 147 (406)
++.+-+ .+...+.|+.+.+..|.|..-. .+..++.|+.|||. ..+++|+.|+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 766532 2455567777777777664311 25667777777776 5666777777
Q ss_pred cCCCCCCCchh--HHHHHHhcCCCccccc
Q 015448 148 LQGNPVAEYDK--LAKKVKTLLPNLCIFN 174 (406)
Q Consensus 148 Ls~N~i~~~~~--~~~~~~~~lp~L~~Ld 174 (406)
+++|.+..-.. +...+....|+|++|.
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~ 276 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLE 276 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceec
Confidence 77777765532 2223344566777665
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.43 E-value=3.3e-07 Score=83.39 Aligned_cols=100 Identities=24% Similarity=0.304 Sum_probs=60.8
Q ss_pred EEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC-CC-CCCCCCcEEEcCCCCCCCC---cCCCCCCCCCEEEccCCcc
Q 015448 45 RLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK-GI-EGLSKPTVLNVGKNKLRSM---DDVTSVVSLRALILNDNEI 119 (406)
Q Consensus 45 ~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~-~l-~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~Ls~N~i 119 (406)
.+||++|.|..++.|..++.|.+|.|++|+|+.|. .+ ..+++|..|.|.+|.|..+ ..+..++.|++|.+-+|++
T Consensus 46 ~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 46 AIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred eecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence 35666666666666666666677777777776665 33 3345677777777766553 3566777788888777777
Q ss_pred CCccccCCCCCCcEeeCCCCCCCCCEEEcCCC
Q 015448 120 VSICKLDQMKELNTLGMDSYFFNLNNLNLQGN 151 (406)
Q Consensus 120 ~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N 151 (406)
+....-.. -.| ..+|+|+.|+++.-
T Consensus 126 ~~k~~YR~----yvl---~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 126 EHKKNYRL----YVL---YKLPSLRTLDFQKV 150 (233)
T ss_pred hcccCcee----EEE---EecCcceEeehhhh
Confidence 66543100 000 24567777776643
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.42 E-value=2.4e-07 Score=102.67 Aligned_cols=112 Identities=26% Similarity=0.382 Sum_probs=84.9
Q ss_pred ccccCCCCCCCCCCccEEEeeCCC--CCCCC--CCCCCCCCcEEEccCCC-CCCCCC-CCCCCCCcEEEecCCCCCCCC-
Q 015448 7 QQILKDNKTCDPNSIKSLSLTHKA--LSDVS--CLTDFNNLERLDLSSNN-LTSLEG-LKHCVNLKWLSLVQNKLQSLK- 79 (406)
Q Consensus 7 n~i~~~~~~~~~~~L~~L~Ls~n~--l~~i~--~l~~l~~L~~L~Ls~N~-l~~l~~-l~~L~~L~~L~Ls~N~l~~l~- 79 (406)
+++..+......+.|++|-+..|. +..++ .|..++.|++|||++|. +..+|. ++.|.+|++|+|+++.|..+|
T Consensus 533 ~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~ 612 (889)
T KOG4658|consen 533 NKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPS 612 (889)
T ss_pred cchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccch
Confidence 344444444445578888888886 66666 48889999999999775 777875 888999999999999999999
Q ss_pred CCCCCCCCcEEEcCCCCC-CCCcCCC-CCCCCCEEEccCCc
Q 015448 80 GIEGLSKPTVLNVGKNKL-RSMDDVT-SVVSLRALILNDNE 118 (406)
Q Consensus 80 ~l~~l~~L~~L~Ls~N~i-~~l~~l~-~l~~L~~L~Ls~N~ 118 (406)
++..|..|.+|++..+.- ..++.+. .+++|++|.+....
T Consensus 613 ~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 613 GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 789999999999988763 3455543 48888888876654
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.29 E-value=1.4e-06 Score=93.89 Aligned_cols=103 Identities=18% Similarity=0.321 Sum_probs=70.9
Q ss_pred CCcEEEccCCCCCCC-C-CCCCCCCCcEEEecCCCCC-CCC-CCCCCCCCcEEEcCCCCCCC-Cc-CCCCCCCCCEEEcc
Q 015448 42 NLERLDLSSNNLTSL-E-GLKHCVNLKWLSLVQNKLQ-SLK-GIEGLSKPTVLNVGKNKLRS-MD-DVTSVVSLRALILN 115 (406)
Q Consensus 42 ~L~~L~Ls~N~l~~l-~-~l~~L~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls 115 (406)
.++.|+|++|.+... | .+..|++|+.|+|++|.|. .+| .+..+++|+.|+|++|.++. +| .+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 367788888887643 3 3777888888888888886 566 57788888888888888875 55 47778888888888
Q ss_pred CCccCC-ccc-cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCC
Q 015448 116 DNEIVS-ICK-LDQMKELNTLGMDSYFFNLNNLNLQGNPVAE 155 (406)
Q Consensus 116 ~N~i~~-l~~-l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~ 155 (406)
+|.++. +|. +..+ +.++..+++.+|+..+
T Consensus 499 ~N~l~g~iP~~l~~~-----------~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGR-----------LLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhc-----------cccCceEEecCCcccc
Confidence 887763 332 2211 1245566777776433
No 48
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=7.6e-09 Score=98.02 Aligned_cols=97 Identities=30% Similarity=0.368 Sum_probs=75.9
Q ss_pred CCccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC-
Q 015448 1 MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK- 79 (406)
Q Consensus 1 m~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~- 79 (406)
|++|+...+.......++.+++.|++.++.|++|+.+..|+.|++|.|+-|.|+.+.+|..|.+|++|+|..|.|.++.
T Consensus 1 M~kLTe~mV~~raK~sdl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 1 MVKLTESMVYIRAKCSDLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred CchHHHHHHHHHHHhhHHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHH
Confidence 5566655554444445578889999999999999988889999999999999999988888999999999988888766
Q ss_pred --CCCCCCCCcEEEcCCCCC
Q 015448 80 --GIEGLSKPTVLNVGKNKL 97 (406)
Q Consensus 80 --~l~~l~~L~~L~Ls~N~i 97 (406)
-+.++++|+.|.|..|.-
T Consensus 81 L~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 81 LEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred HHHHhcCchhhhHhhccCCc
Confidence 256666666666666543
No 49
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=2.4e-06 Score=91.95 Aligned_cols=78 Identities=24% Similarity=0.429 Sum_probs=37.8
Q ss_pred ccEEEeeCCCCCCC-C-CCCCCCCCcEEEccCCCCC-CCC-CCCCCCCCcEEEecCCCCC-CCC-CCCCCCCCcEEEcCC
Q 015448 21 IKSLSLTHKALSDV-S-CLTDFNNLERLDLSSNNLT-SLE-GLKHCVNLKWLSLVQNKLQ-SLK-GIEGLSKPTVLNVGK 94 (406)
Q Consensus 21 L~~L~Ls~n~l~~i-~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~~L~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~ 94 (406)
++.|+|++|.+... + .+..+++|+.|+|++|.|. .+| .+..+++|+.|+|++|.++ .+| .+..|++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44455555555432 2 4444555555555555554 223 2445555555555555554 344 344555555555555
Q ss_pred CCCC
Q 015448 95 NKLR 98 (406)
Q Consensus 95 N~i~ 98 (406)
|.++
T Consensus 500 N~l~ 503 (623)
T PLN03150 500 NSLS 503 (623)
T ss_pred Cccc
Confidence 5544
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=1e-06 Score=61.09 Aligned_cols=37 Identities=43% Similarity=0.590 Sum_probs=15.2
Q ss_pred CCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCC
Q 015448 42 NLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSL 78 (406)
Q Consensus 42 ~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l 78 (406)
+|++|+|++|.|+.+++ +.+|++|++|+|++|.|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34444444444444443 44444444444444444433
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=1.4e-06 Score=60.41 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=17.5
Q ss_pred CCcEEEecCCCCCCCCC-CCCCCCCcEEEcCCCCCCCCc
Q 015448 64 NLKWLSLVQNKLQSLKG-IEGLSKPTVLNVGKNKLRSMD 101 (406)
Q Consensus 64 ~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~i~~l~ 101 (406)
+|++|+|++|+|+.+|+ +..|++|++|++++|.|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 44455555555555443 444444444444444444443
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.07 E-value=5e-06 Score=92.30 Aligned_cols=123 Identities=22% Similarity=0.266 Sum_probs=92.8
Q ss_pred CCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCC--CCCCCC--CCCCCCCcEEEecCC-CCCCCC-CCCCCCCCc
Q 015448 15 TCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNN--LTSLEG--LKHCVNLKWLSLVQN-KLQSLK-GIEGLSKPT 88 (406)
Q Consensus 15 ~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~--l~~l~~--l~~L~~L~~L~Ls~N-~l~~l~-~l~~l~~L~ 88 (406)
......++.+.+.+|.+..++.-..++.|++|-+..|. +..++. |..++.|++|||++| .+..+| .++.|-+|+
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred ccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 34456778888888888887755667789899888886 666665 788999999999976 456788 688889999
Q ss_pred EEEcCCCCCCCCc-CCCCCCCCCEEEccCCcc-CCccc-cCCCCCCcEeeCC
Q 015448 89 VLNVGKNKLRSMD-DVTSVVSLRALILNDNEI-VSICK-LDQMKELNTLGMD 137 (406)
Q Consensus 89 ~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i-~~l~~-l~~L~~L~~L~Ls 137 (406)
+|+|+++.|..+| ++..+..|.+|++..+.. ..++. +..|.+|++|.+.
T Consensus 599 yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 599 YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred cccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 9999999999888 588888999999887753 33333 3336666666554
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.04 E-value=2.3e-06 Score=92.69 Aligned_cols=149 Identities=19% Similarity=0.205 Sum_probs=83.8
Q ss_pred CCccEEEeeCCCCCC--CC--CCCCCCCCcEEEccCCCCCCCC---CCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEE
Q 015448 19 NSIKSLSLTHKALSD--VS--CLTDFNNLERLDLSSNNLTSLE---GLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLN 91 (406)
Q Consensus 19 ~~L~~L~Ls~n~l~~--i~--~l~~l~~L~~L~Ls~N~l~~l~---~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ 91 (406)
.+|++|++++...-. ++ .-..||+|+.|.+++-.+..-. -..++|+|..||+|+++|+.+.+++.|.+|++|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 356666666644321 11 2235677777777666554332 2456677777777777777776677777777776
Q ss_pred cCCCCCCCCc---CCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCC
Q 015448 92 VGKNKLRSMD---DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLP 168 (406)
Q Consensus 92 Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp 168 (406)
+.+=.+.... .+..|++|++||+|.......+.+. .+++.....+|+|+.|+.+++.+...-- ..++...|
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii----~qYlec~~~LpeLrfLDcSgTdi~~~~l--e~ll~sH~ 275 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKII----EQYLECGMVLPELRFLDCSGTDINEEIL--EELLNSHP 275 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHH----HHHHHhcccCccccEEecCCcchhHHHH--HHHHHhCc
Confidence 6665554422 4566677777777665443322100 0011111467888888888877754321 23445566
Q ss_pred Ccccc
Q 015448 169 NLCIF 173 (406)
Q Consensus 169 ~L~~L 173 (406)
+|+.+
T Consensus 276 ~L~~i 280 (699)
T KOG3665|consen 276 NLQQI 280 (699)
T ss_pred cHhhh
Confidence 66533
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.01 E-value=2.6e-07 Score=79.40 Aligned_cols=128 Identities=26% Similarity=0.329 Sum_probs=75.4
Q ss_pred CcEEEccCCCCCCCC----CCCCCCCCcEEEecCCCCCCCC-CCC-CCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEcc
Q 015448 43 LERLDLSSNNLTSLE----GLKHCVNLKWLSLVQNKLQSLK-GIE-GLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILN 115 (406)
Q Consensus 43 L~~L~Ls~N~l~~l~----~l~~L~~L~~L~Ls~N~l~~l~-~l~-~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls 115 (406)
+..|+|+.|+|-.++ .+.....|..++|++|.+..+| .|. .++.+++|+|++|.|+.+| .+..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 445566666655443 1445556666677777777666 332 3346677777777777766 46677777777777
Q ss_pred CCccCCccc-cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCCChhhhh
Q 015448 116 DNEIVSICK-LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKN 184 (406)
Q Consensus 116 ~N~i~~l~~-l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~~~~~~~ 184 (406)
.|.+...+. +..| .+|-.|+..+|.+..++.- .+...++.|.-+...|+....+.
T Consensus 109 ~N~l~~~p~vi~~L------------~~l~~Lds~~na~~eid~d--l~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPL------------IKLDMLDSPENARAEIDVD--LFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred cCccccchHHHHHH------------HhHHHhcCCCCccccCcHH--HhccccHHHHHhcCCcccccCcc
Confidence 777766553 2222 2455666677777666542 23445555555555555544443
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.97 E-value=2.8e-06 Score=80.14 Aligned_cols=104 Identities=25% Similarity=0.318 Sum_probs=78.6
Q ss_pred CCccEEEeeCCCCCC---CC-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCC---CCC-CCCCCCCCcEE
Q 015448 19 NSIKSLSLTHKALSD---VS-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQ---SLK-GIEGLSKPTVL 90 (406)
Q Consensus 19 ~~L~~L~Ls~n~l~~---i~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~---~l~-~l~~l~~L~~L 90 (406)
..++.+.+. |.++. +. ....+..|+.|.+.+..++.+..|..|++|+.|.++.|.+. .++ ....+++|++|
T Consensus 18 ~~v~~l~lD-~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l 96 (260)
T KOG2739|consen 18 EQVDELFLD-NARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVL 96 (260)
T ss_pred hhhhhhhcc-hhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEE
Confidence 345555555 33332 22 44567789999999999999988999999999999999544 344 34566999999
Q ss_pred EcCCCCCCCC---cCCCCCCCCCEEEccCCccCCcc
Q 015448 91 NVGKNKLRSM---DDVTSVVSLRALILNDNEIVSIC 123 (406)
Q Consensus 91 ~Ls~N~i~~l---~~l~~l~~L~~L~Ls~N~i~~l~ 123 (406)
+|++|+|..+ +++..+.+|..|++.+|..+.+.
T Consensus 97 ~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~ 132 (260)
T KOG2739|consen 97 NLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLD 132 (260)
T ss_pred eecCCccccccccchhhhhcchhhhhcccCCccccc
Confidence 9999998764 45677888999999999887754
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.88 E-value=6e-07 Score=77.22 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=84.1
Q ss_pred CccEEEeeCCCCCCCC----CCCCCCCCcEEEccCCCCCCCCC-C-CCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEc
Q 015448 20 SIKSLSLTHKALSDVS----CLTDFNNLERLDLSSNNLTSLEG-L-KHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNV 92 (406)
Q Consensus 20 ~L~~L~Ls~n~l~~i~----~l~~l~~L~~L~Ls~N~l~~l~~-l-~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 92 (406)
.+..|+|++|.|-.++ .+.....|...+|++|.+..+|. | ..++.++.|+|++|.|+.+| .+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 3556788888776654 45666788888999999998874 4 34568899999999999999 6889999999999
Q ss_pred CCCCCCCCc-CCCCCCCCCEEEccCCccCCccc
Q 015448 93 GKNKLRSMD-DVTSVVSLRALILNDNEIVSICK 124 (406)
Q Consensus 93 s~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~ 124 (406)
+.|.|...| .+..+.+|-.|+..+|.+..++.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 999998876 35568888889999988877764
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=8.9e-06 Score=78.17 Aligned_cols=176 Identities=21% Similarity=0.261 Sum_probs=106.8
Q ss_pred ccEEEeeCCCCCCCC---CC-CCCCCCcEEEccCCCCCCCCC----CCCCCCCcEEEecCCCCCC-CCCC-CCCCCCcEE
Q 015448 21 IKSLSLTHKALSDVS---CL-TDFNNLERLDLSSNNLTSLEG----LKHCVNLKWLSLVQNKLQS-LKGI-EGLSKPTVL 90 (406)
Q Consensus 21 L~~L~Ls~n~l~~i~---~l-~~l~~L~~L~Ls~N~l~~l~~----l~~L~~L~~L~Ls~N~l~~-l~~l-~~l~~L~~L 90 (406)
+..|.+.++.|.... .| ..+..+..|||.+|.|++.+. +.+||.|++|+|+.|.+.+ |..+ ..+.+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 445667777776654 22 356789999999999998853 6789999999999999874 3344 356689999
Q ss_pred EcCCCCCCC--Cc-CCCCCCCCCEEEccCCccCC----------cc-c---cCCCCCCcEeeCC-----CCCCCCCEEEc
Q 015448 91 NVGKNKLRS--MD-DVTSVVSLRALILNDNEIVS----------IC-K---LDQMKELNTLGMD-----SYFFNLNNLNL 148 (406)
Q Consensus 91 ~Ls~N~i~~--l~-~l~~l~~L~~L~Ls~N~i~~----------l~-~---l~~L~~L~~L~Ls-----~~l~~L~~L~L 148 (406)
.|.+..+.- .. .+..+|.++.|+++.|.+.. +. . +..++++..+.+. .-+|++..+-+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 998887643 22 35567777777777774432 22 1 1111221111111 56777888888
Q ss_pred CCCCCCCchhHHHHHHhcCCCcccccCc--CCChhhhhhhhhhhcccCCCCC
Q 015448 149 QGNPVAEYDKLAKKVKTLLPNLCIFNAR--PIDRITKNEKDNIVDKVNDSSN 198 (406)
Q Consensus 149 s~N~i~~~~~~~~~~~~~lp~L~~Ld~~--~~~~~~~~~~~~~l~~~~d~~~ 198 (406)
..||+.+.... .-...+|.+..|+.. .+...........++++.|+..
T Consensus 207 ~e~PlK~~s~e--k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv 256 (418)
T KOG2982|consen 207 CEGPLKTESSE--KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRV 256 (418)
T ss_pred ecCcccchhhc--ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeec
Confidence 88887665431 123455666555543 3444444444444444334433
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.74 E-value=3.3e-05 Score=73.53 Aligned_cols=162 Identities=17% Similarity=0.207 Sum_probs=92.7
Q ss_pred CCCccEEEeeCCCCCCC-----C-CCCCCCCCcEEEccCCCCCCC------------CCCCCCCCCcEEEecCCCCCC-C
Q 015448 18 PNSIKSLSLTHKALSDV-----S-CLTDFNNLERLDLSSNNLTSL------------EGLKHCVNLKWLSLVQNKLQS-L 78 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i-----~-~l~~l~~L~~L~Ls~N~l~~l------------~~l~~L~~L~~L~Ls~N~l~~-l 78 (406)
+..++.++||+|.|..- . ++.+-.+|++.+++.-..... +.+..||+|+..+||.|.|.. .
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 55677888888877542 1 455566666666665433321 235567777777777776652 2
Q ss_pred C-C----CCCCCCCcEEEcCCCCCCCCcC---------------CCCCCCCCEEEccCCccCCccc------cCCCCCCc
Q 015448 79 K-G----IEGLSKPTVLNVGKNKLRSMDD---------------VTSVVSLRALILNDNEIVSICK------LDQMKELN 132 (406)
Q Consensus 79 ~-~----l~~l~~L~~L~Ls~N~i~~l~~---------------l~~l~~L~~L~Ls~N~i~~l~~------l~~L~~L~ 132 (406)
| . +...+.|.+|.|++|.+..+.+ ...-|.|+.++...|++...+. +..-.+|.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 2 1 4556667777777776655421 1233567777777776655432 11112344
Q ss_pred EeeCC-----------------CCCCCCCEEEcCCCCCCCch-hHHHHHHhcCCCcccccCcCCC
Q 015448 133 TLGMD-----------------SYFFNLNNLNLQGNPVAEYD-KLAKKVKTLLPNLCIFNARPID 179 (406)
Q Consensus 133 ~L~Ls-----------------~~l~~L~~L~Ls~N~i~~~~-~~~~~~~~~lp~L~~Ld~~~~~ 179 (406)
++-+. ..+.+|..|+|..|-++-.. .+....+...+.|+.|..+.|-
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 44333 34567778888888776553 2333344556666766666554
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=3.3e-05 Score=83.80 Aligned_cols=105 Identities=26% Similarity=0.340 Sum_probs=86.9
Q ss_pred CCCCccEEEeeCCCCCCC--C-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC---CCCCCCCCcEE
Q 015448 17 DPNSIKSLSLTHKALSDV--S-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK---GIEGLSKPTVL 90 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~l~~i--~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L 90 (406)
.+|+|++|.+++-.+..- . .+.+||+|..||+|+.+++.+.+++.|.+|+.|.+.+=.+..-. .+..|.+|++|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 489999999999887654 2 56799999999999999999999999999999999887777543 58899999999
Q ss_pred EcCCCCCCCCc--------CCCCCCCCCEEEccCCccCC
Q 015448 91 NVGKNKLRSMD--------DVTSVVSLRALILNDNEIVS 121 (406)
Q Consensus 91 ~Ls~N~i~~l~--------~l~~l~~L~~L~Ls~N~i~~ 121 (406)
|+|.......+ --..+|.|+.||.|++.+..
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 99988765532 12358999999999886643
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.49 E-value=0.00045 Score=70.21 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=44.4
Q ss_pred CCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCC-CCCCCCCCCCCCCCcEEEecCC-CCCCCCCCCCCCCCcEEEcCCC
Q 015448 18 PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSN-NLTSLEGLKHCVNLKWLSLVQN-KLQSLKGIEGLSKPTVLNVGKN 95 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N-~l~~l~~l~~L~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N 95 (406)
+.+++.|++++|.|+.+|.+ -.+|+.|.++++ .++.+|..- ..+|+.|.|++| .+..+| ..|+.|+++.|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~~n 122 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLP-----ESVRSLEIKGS 122 (426)
T ss_pred hcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccc-----cccceEEeCCC
Confidence 36677888888877777632 236888888763 455555411 357788888777 555544 23555556555
Q ss_pred CC
Q 015448 96 KL 97 (406)
Q Consensus 96 ~i 97 (406)
.+
T Consensus 123 ~~ 124 (426)
T PRK15386 123 AT 124 (426)
T ss_pred CC
Confidence 43
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.46 E-value=9.1e-05 Score=70.57 Aligned_cols=121 Identities=23% Similarity=0.263 Sum_probs=58.8
Q ss_pred CCCCCCCCcEEEccCCCCCCC-C-----CCCCCCCCcEEEecCCCCCCCCC---------------CCCCCCCcEEEcCC
Q 015448 36 CLTDFNNLERLDLSSNNLTSL-E-----GLKHCVNLKWLSLVQNKLQSLKG---------------IEGLSKPTVLNVGK 94 (406)
Q Consensus 36 ~l~~l~~L~~L~Ls~N~l~~l-~-----~l~~L~~L~~L~Ls~N~l~~l~~---------------l~~l~~L~~L~Ls~ 94 (406)
.+..||+|+..+||.|.|..- + .++.-..|.+|.|++|.+..+.+ ...-|.|++.....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 344556666666666655432 1 14445556666666665554331 12234555555555
Q ss_pred CCCCCCc------CCCCCCCCCEEEccCCccCCc--c-----ccCCCCCCcEeeCC----------------CCCCCCCE
Q 015448 95 NKLRSMD------DVTSVVSLRALILNDNEIVSI--C-----KLDQMKELNTLGMD----------------SYFFNLNN 145 (406)
Q Consensus 95 N~i~~l~------~l~~l~~L~~L~Ls~N~i~~l--~-----~l~~L~~L~~L~Ls----------------~~l~~L~~ 145 (406)
|++...+ .+..-..|..+.+..|.|..- . .+..+.+|..|+|. ...+.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 5554432 122223455555555544321 1 13344455555554 34455666
Q ss_pred EEcCCCCCCCc
Q 015448 146 LNLQGNPVAEY 156 (406)
Q Consensus 146 L~Ls~N~i~~~ 156 (406)
|.+..|.++.-
T Consensus 247 L~lnDClls~~ 257 (388)
T COG5238 247 LRLNDCLLSNE 257 (388)
T ss_pred ccccchhhccc
Confidence 66666666544
No 62
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=1.9e-06 Score=82.72 Aligned_cols=160 Identities=17% Similarity=0.113 Sum_probs=83.5
Q ss_pred CccEEEeeCCCCCCCC---CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCC-CCCCC---CCCCCCCCcEE
Q 015448 20 SIKSLSLTHKALSDVS---CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNK-LQSLK---GIEGLSKPTVL 90 (406)
Q Consensus 20 ~L~~L~Ls~n~l~~i~---~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~-l~~l~---~l~~l~~L~~L 90 (406)
.|+.|+|++..|+.-. .++.|..|+.|.|.++.+.+-- .+....+|+.|+|+.+. |+.-. -+.+|..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4777777777665432 4556666666777666665531 25555666666666542 33222 14556666666
Q ss_pred EcCCCCCCCC--c-CCCC-CCCCCEEEccCCc----cCCccc-cCCCCCCcEeeCC-------------CCCCCCCEEEc
Q 015448 91 NVGKNKLRSM--D-DVTS-VVSLRALILNDNE----IVSICK-LDQMKELNTLGMD-------------SYFFNLNNLNL 148 (406)
Q Consensus 91 ~Ls~N~i~~l--~-~l~~-l~~L~~L~Ls~N~----i~~l~~-l~~L~~L~~L~Ls-------------~~l~~L~~L~L 148 (406)
+|+.|.+..- . .+.+ -++|..|+|+++. ++.+.. ...+++|..|||+ -.++.|++|.|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 6666655431 1 1122 1355556665542 111211 3345555555555 35556666666
Q ss_pred CCCCCCCchhHHHHHHhcCCCcccccCcCCChh
Q 015448 149 QGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRI 181 (406)
Q Consensus 149 s~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~~~~ 181 (406)
+.|-.-. +.....+...|.|.+||...+...
T Consensus 346 sRCY~i~--p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 346 SRCYDII--PETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hhhcCCC--hHHeeeeccCcceEEEEeccccCc
Confidence 6553222 211123456677777776655444
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=1.2e-05 Score=77.35 Aligned_cols=151 Identities=23% Similarity=0.209 Sum_probs=101.1
Q ss_pred CCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCC-CCCCC---CCCCCCCCcEEEecCCCCCCC--C-CCC-CCCCC
Q 015448 18 PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNN-LTSLE---GLKHCVNLKWLSLVQNKLQSL--K-GIE-GLSKP 87 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~-l~~l~---~l~~L~~L~~L~Ls~N~l~~l--~-~l~-~l~~L 87 (406)
+..|+.|.|.++.+.+-- .+..-.+|+.|+|+.+. |+... -+.+|..|..|+|++|.+..- . .+. --++|
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 567888888888887732 67777889999998764 66543 267888899999999877631 1 111 12467
Q ss_pred cEEEcCCCC----CCCCcC-CCCCCCCCEEEccCCc-cCC--ccccCCCCCCcEeeCC-------------CCCCCCCEE
Q 015448 88 TVLNVGKNK----LRSMDD-VTSVVSLRALILNDNE-IVS--ICKLDQMKELNTLGMD-------------SYFFNLNNL 146 (406)
Q Consensus 88 ~~L~Ls~N~----i~~l~~-l~~l~~L~~L~Ls~N~-i~~--l~~l~~L~~L~~L~Ls-------------~~l~~L~~L 146 (406)
+.|+|+++. ..++.. ...+++|.+|+|++|. ++. +..+..++.|++|.|+ ...|.|.+|
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yL 368 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYL 368 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEE
Confidence 788888764 122332 3467888888888763 333 1236667778888777 688999999
Q ss_pred EcCCCCCCCchhHHHHHHhcCCCcc
Q 015448 147 NLQGNPVAEYDKLAKKVKTLLPNLC 171 (406)
Q Consensus 147 ~Ls~N~i~~~~~~~~~~~~~lp~L~ 171 (406)
++.|+--.+- ...+...+|+|.
T Consensus 369 dv~g~vsdt~---mel~~e~~~~lk 390 (419)
T KOG2120|consen 369 DVFGCVSDTT---MELLKEMLSHLK 390 (419)
T ss_pred EeccccCchH---HHHHHHhCcccc
Confidence 9987633221 223456788876
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.19 E-value=0.00095 Score=67.90 Aligned_cols=108 Identities=22% Similarity=0.284 Sum_probs=71.7
Q ss_pred CCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecC-CCCCCCCC-CCCCCCCcEEEcCCC-CCCCCcCCCCCCCCCEEE
Q 015448 37 LTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQ-NKLQSLKG-IEGLSKPTVLNVGKN-KLRSMDDVTSVVSLRALI 113 (406)
Q Consensus 37 l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~-N~l~~l~~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~ 113 (406)
+..+.++++|++++|.|+.+|.+ ..+|+.|.+++ +.++.+|+ + .++|+.|.+++| .+..+| .+|+.|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~ 118 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSLE 118 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceEE
Confidence 44578999999999999999843 35799999987 45667774 3 358999999998 566554 3577777
Q ss_pred ccCCccCCccccCCCCCCcEeeCC-----------CCC-CCCCEEEcCCCCCCC
Q 015448 114 LNDNEIVSICKLDQMKELNTLGMD-----------SYF-FNLNNLNLQGNPVAE 155 (406)
Q Consensus 114 Ls~N~i~~l~~l~~L~~L~~L~Ls-----------~~l-~~L~~L~Ls~N~i~~ 155 (406)
++.+.+..+..+. ++|+.|.+. ..+ ++|++|++++|....
T Consensus 119 L~~n~~~~L~~LP--ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 119 IKGSATDSIKNVP--NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII 170 (426)
T ss_pred eCCCCCcccccCc--chHhheeccccccccccccccccCCcccEEEecCCCccc
Confidence 7776544333211 133333331 011 467777777766543
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.75 E-value=0.0043 Score=52.07 Aligned_cols=77 Identities=16% Similarity=0.368 Sum_probs=27.4
Q ss_pred CCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCC
Q 015448 37 LTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLR 110 (406)
Q Consensus 37 l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~ 110 (406)
|..+.+|+.+.+.. .+..+. .|.++.+|+.+.+..+ +..++ .+..++.|+.+.+.+ .+..++ .+..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33444444444442 333332 2444444555555443 44444 244444455555543 232222 233445555
Q ss_pred EEEccC
Q 015448 111 ALILND 116 (406)
Q Consensus 111 ~L~Ls~ 116 (406)
.+.+..
T Consensus 85 ~i~~~~ 90 (129)
T PF13306_consen 85 NIDIPS 90 (129)
T ss_dssp EEEETT
T ss_pred ccccCc
Confidence 555543
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.40 E-value=0.0095 Score=49.90 Aligned_cols=103 Identities=14% Similarity=0.387 Sum_probs=59.6
Q ss_pred CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCc
Q 015448 15 TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPT 88 (406)
Q Consensus 15 ~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~ 88 (406)
.....+|+.+.+.. .+..+. .|..+.+|+.+.+..+ +..++ .|.++.+|+.+.+.+ .+..++ .+..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44566888888874 576665 7888889999999875 77665 388888899999975 666666 477789999
Q ss_pred EEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCcc
Q 015448 89 VLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSIC 123 (406)
Q Consensus 89 ~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~ 123 (406)
.+.+..+ +..++ .+..+ .|+.+.+.. .+..++
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~ 118 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIE 118 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS--
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEEC
Confidence 9999765 65554 35565 788887765 444443
No 67
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=96.23 E-value=0.0029 Score=65.67 Aligned_cols=90 Identities=26% Similarity=0.446 Sum_probs=67.2
Q ss_pred CCCCCCcEEEcCCCCCCCCcCCC----CCCCCCEEEccCC--ccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCC
Q 015448 82 EGLSKPTVLNVGKNKLRSMDDVT----SVVSLRALILNDN--EIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAE 155 (406)
Q Consensus 82 ~~l~~L~~L~Ls~N~i~~l~~l~----~l~~L~~L~Ls~N--~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~ 155 (406)
.+.+.+..++|++|+|..+..+. ..+.|..|+|++| .+.....+..+.. ..|++|-|.|||+++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~----------l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG----------LPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC----------CCHHHeeecCCcccc
Confidence 34567888999999998876543 3578999999999 5555444554432 368999999999976
Q ss_pred c----hhHHHHHHhcCCCcccccCcCCChh
Q 015448 156 Y----DKLAKKVKTLLPNLCIFNARPIDRI 181 (406)
Q Consensus 156 ~----~~~~~~~~~~lp~L~~Ld~~~~~~~ 181 (406)
- ..|...+...+|+|..||+..+...
T Consensus 285 tf~~~s~yv~~i~~~FPKL~~LDG~ev~~~ 314 (585)
T KOG3763|consen 285 TFSDRSEYVSAIRELFPKLLRLDGVEVQPE 314 (585)
T ss_pred chhhhHHHHHHHHHhcchheeecCcccCcc
Confidence 4 3344456779999999999877653
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.25 E-value=0.062 Score=29.30 Aligned_cols=14 Identities=50% Similarity=0.665 Sum_probs=4.9
Q ss_pred CCcEEEecCCCCCC
Q 015448 64 NLKWLSLVQNKLQS 77 (406)
Q Consensus 64 ~L~~L~Ls~N~l~~ 77 (406)
+|+.|+|++|+|+.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.23 E-value=0.014 Score=59.87 Aligned_cols=102 Identities=25% Similarity=0.230 Sum_probs=50.8
Q ss_pred CCCccEEEeeCC-CCCC--C-CCCCCCCCCcEEEccCC--CCCCCC-----CCCCCCCCcEEEecCCC-CCCCC--CC-C
Q 015448 18 PNSIKSLSLTHK-ALSD--V-SCLTDFNNLERLDLSSN--NLTSLE-----GLKHCVNLKWLSLVQNK-LQSLK--GI-E 82 (406)
Q Consensus 18 ~~~L~~L~Ls~n-~l~~--i-~~l~~l~~L~~L~Ls~N--~l~~l~-----~l~~L~~L~~L~Ls~N~-l~~l~--~l-~ 82 (406)
.+.|+.|.+..+ .++. + +....++.|+.|+++++ .+...+ -...+.+|+.|+++++. +++.. .+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 345555555543 2333 1 23445666666766652 111111 13345666666666665 44322 12 2
Q ss_pred CCCCCcEEEcCCCC-CCCC--cC-CCCCCCCCEEEccCCcc
Q 015448 83 GLSKPTVLNVGKNK-LRSM--DD-VTSVVSLRALILNDNEI 119 (406)
Q Consensus 83 ~l~~L~~L~Ls~N~-i~~l--~~-l~~l~~L~~L~Ls~N~i 119 (406)
.+++|+.|.+.+|. +++. .. ...+++|++|+|+++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 25666666666665 4442 12 23455677777766543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.11 E-value=0.039 Score=32.11 Aligned_cols=15 Identities=40% Similarity=0.640 Sum_probs=7.1
Q ss_pred CcEEEecCCCCCCCC
Q 015448 65 LKWLSLVQNKLQSLK 79 (406)
Q Consensus 65 L~~L~Ls~N~l~~l~ 79 (406)
|++|+|++|+|+.+|
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 444444444444444
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.43 E-value=0.005 Score=64.30 Aligned_cols=161 Identities=27% Similarity=0.282 Sum_probs=88.1
Q ss_pred ccEEEeeCCCCCCCC------CCCCCCCCcEEEccCCCCCCCC------CCCCC-CCCcEEEecCCCCCCCC------CC
Q 015448 21 IKSLSLTHKALSDVS------CLTDFNNLERLDLSSNNLTSLE------GLKHC-VNLKWLSLVQNKLQSLK------GI 81 (406)
Q Consensus 21 L~~L~Ls~n~l~~i~------~l~~l~~L~~L~Ls~N~l~~l~------~l~~L-~~L~~L~Ls~N~l~~l~------~l 81 (406)
+..|.|.+|.+.... .+..+++|..|+|++|.+.... .+... ..|++|++..|.++... .+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 566777777776542 4566677777777777776431 23333 45666667666666422 24
Q ss_pred CCCCCCcEEEcCCCCCCCC-----c-CCC----CCCCCCEEEccCCccCCccc------cCCCCC-CcEeeCC-------
Q 015448 82 EGLSKPTVLNVGKNKLRSM-----D-DVT----SVVSLRALILNDNEIVSICK------LDQMKE-LNTLGMD------- 137 (406)
Q Consensus 82 ~~l~~L~~L~Ls~N~i~~l-----~-~l~----~l~~L~~L~Ls~N~i~~l~~------l~~L~~-L~~L~Ls------- 137 (406)
.....|+.|+++.|.+... + .+. ...++++|.+++|.++.... +...+. +..|++.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 4466667777777766431 1 122 35566777777776653211 222232 3334333
Q ss_pred ---------CCC-CCCCEEEcCCCCCCCchh-HHHHHHhcCCCccccc--CcCCChh
Q 015448 138 ---------SYF-FNLNNLNLQGNPVAEYDK-LAKKVKTLLPNLCIFN--ARPIDRI 181 (406)
Q Consensus 138 ---------~~l-~~L~~L~Ls~N~i~~~~~-~~~~~~~~lp~L~~Ld--~~~~~~~ 181 (406)
..+ ..++.++++.|.|..... ....++..++.++.+. .+++...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 223 466788888888876532 1223445566666544 3444433
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.25 E-value=0.0021 Score=60.23 Aligned_cols=83 Identities=14% Similarity=0.101 Sum_probs=47.5
Q ss_pred CCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCccc-cCCCCCCcEee
Q 015448 59 LKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLG 135 (406)
Q Consensus 59 l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~ 135 (406)
+..+...+.||++.|++..+. .+.-++.|..|+++.|.|..+| .+..+..++.+++..|.++..|. +.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~--------- 108 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK--------- 108 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccc---------
Confidence 334455556666666655554 4555566666666666666655 35555556666666666655552 32
Q ss_pred CCCCCCCCCEEEcCCCCC
Q 015448 136 MDSYFFNLNNLNLQGNPV 153 (406)
Q Consensus 136 Ls~~l~~L~~L~Ls~N~i 153 (406)
..++++++++-+|++
T Consensus 109 ---k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 109 ---KEPHPKKNEQKKTEF 123 (326)
T ss_pred ---ccCCcchhhhccCcc
Confidence 234566666666664
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.87 E-value=0.0031 Score=59.09 Aligned_cols=90 Identities=21% Similarity=0.228 Sum_probs=74.5
Q ss_pred CCCCC--CCCCCCCCcEEEccCCCCCCCC-CCCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEcCCCCCCCCc-CCCC
Q 015448 31 LSDVS--CLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNVGKNKLRSMD-DVTS 105 (406)
Q Consensus 31 l~~i~--~l~~l~~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~ 105 (406)
++.+| .+..+...+.||++.|++..+. .|+-+..|..|+++.|.|..+| .+..+..+..+++.+|.+...| .+..
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k 109 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKK 109 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence 34444 5567788899999999988775 4777888899999999999888 7888888889999999998888 6788
Q ss_pred CCCCCEEEccCCccC
Q 015448 106 VVSLRALILNDNEIV 120 (406)
Q Consensus 106 l~~L~~L~Ls~N~i~ 120 (406)
++.++++++-.|.++
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 899999999888754
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.85 E-value=0.1 Score=28.44 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=5.9
Q ss_pred CCcEEEcCCCCCCCC
Q 015448 86 KPTVLNVGKNKLRSM 100 (406)
Q Consensus 86 ~L~~L~Ls~N~i~~l 100 (406)
+|+.|+|++|.|+.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 445555555554443
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=88.95 E-value=0.2 Score=29.06 Aligned_cols=15 Identities=40% Similarity=0.401 Sum_probs=6.8
Q ss_pred CCEEEccCCccCCcc
Q 015448 109 LRALILNDNEIVSIC 123 (406)
Q Consensus 109 L~~L~Ls~N~i~~l~ 123 (406)
|++|+|++|.|+.+|
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 444444444444433
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=88.66 E-value=0.16 Score=51.99 Aligned_cols=126 Identities=20% Similarity=0.159 Sum_probs=71.9
Q ss_pred CCCCCcEEEccCCC-CCC--C-CCCCCCCCCcEEEecCC--CCCCCC-----CCCCCCCCcEEEcCCCC-CCCC--cCCC
Q 015448 39 DFNNLERLDLSSNN-LTS--L-EGLKHCVNLKWLSLVQN--KLQSLK-----GIEGLSKPTVLNVGKNK-LRSM--DDVT 104 (406)
Q Consensus 39 ~l~~L~~L~Ls~N~-l~~--l-~~l~~L~~L~~L~Ls~N--~l~~l~-----~l~~l~~L~~L~Ls~N~-i~~l--~~l~ 104 (406)
.+++|+.|.+..+. ++. + +....+++|+.|+++++ .+...+ -...+++|+.|+++.+. +++. ..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46777777777663 443 2 23556778888888763 122111 13455777888887777 5543 2222
Q ss_pred -CCCCCCEEEccCCc-cCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccccc
Q 015448 105 -SVVSLRALILNDNE-IVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN 174 (406)
Q Consensus 105 -~l~~L~~L~Ls~N~-i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld 174 (406)
.+++|+.|.+.++. +++..- ..+. ..+++|++|+|+++.......+... ...+++|+.|.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl-~~i~--------~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~ 327 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGL-VSIA--------ERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELK 327 (482)
T ss_pred hhCCCcceEccCCCCccchhHH-HHHH--------HhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhh
Confidence 36678877766665 443221 1110 3566788888887766544434333 44577766544
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.22 E-value=0.0093 Score=62.28 Aligned_cols=141 Identities=28% Similarity=0.303 Sum_probs=87.9
Q ss_pred CCCCccEEEeeCCCCCCCC------CCCCC-CCCcEEEccCCCCCCCC------CCCCCCCCcEEEecCCCCCC-----C
Q 015448 17 DPNSIKSLSLTHKALSDVS------CLTDF-NNLERLDLSSNNLTSLE------GLKHCVNLKWLSLVQNKLQS-----L 78 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~l~~i~------~l~~l-~~L~~L~Ls~N~l~~l~------~l~~L~~L~~L~Ls~N~l~~-----l 78 (406)
...+|..|++++|++.+.. .+... ..|++|.+..|.++... .+.....|+.|+++.|.+.. +
T Consensus 113 t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l 192 (478)
T KOG4308|consen 113 TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVL 192 (478)
T ss_pred ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHH
Confidence 3567777888888887542 33333 45677777777777652 25557777777777777642 1
Q ss_pred C-CCC----CCCCCcEEEcCCCCCCCCc------CCCCCCC-CCEEEccCCccCCc------cccCCC-CCCcEeeCC--
Q 015448 79 K-GIE----GLSKPTVLNVGKNKLRSMD------DVTSVVS-LRALILNDNEIVSI------CKLDQM-KELNTLGMD-- 137 (406)
Q Consensus 79 ~-~l~----~l~~L~~L~Ls~N~i~~l~------~l~~l~~-L~~L~Ls~N~i~~l------~~l~~L-~~L~~L~Ls-- 137 (406)
+ .+. ...++++|.|++|.++... .+...++ +..|++..|.+.+. +.+..+ ..++.+++.
T Consensus 193 ~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n 272 (478)
T KOG4308|consen 193 SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRN 272 (478)
T ss_pred hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcC
Confidence 1 222 3566777777777776521 2344444 55577777766543 113333 445555555
Q ss_pred --------------CCCCCCCEEEcCCCCCCCch
Q 015448 138 --------------SYFFNLNNLNLQGNPVAEYD 157 (406)
Q Consensus 138 --------------~~l~~L~~L~Ls~N~i~~~~ 157 (406)
..++.++.|.++.|++....
T Consensus 273 si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~ 306 (478)
T KOG4308|consen 273 SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG 306 (478)
T ss_pred CccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence 46678999999999998764
No 78
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.23 E-value=0.42 Score=48.55 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=85.8
Q ss_pred CCCCCCcEEEccCCCC-CCCC--C-CCCCCCCcEEEecCCC-CCCCC--C-CCCCCCCcEEEcCCCCCCC---CcC-CCC
Q 015448 38 TDFNNLERLDLSSNNL-TSLE--G-LKHCVNLKWLSLVQNK-LQSLK--G-IEGLSKPTVLNVGKNKLRS---MDD-VTS 105 (406)
Q Consensus 38 ~~l~~L~~L~Ls~N~l-~~l~--~-l~~L~~L~~L~Ls~N~-l~~l~--~-l~~l~~L~~L~Ls~N~i~~---l~~-l~~ 105 (406)
..+..|++|+.+++.- ++.+ . -.++++|++|-|+.++ ++... . -.+++.|+.|++..+.... +.. -.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 3566777777766543 3221 1 3456778888887775 22222 1 2355677777777776433 222 245
Q ss_pred CCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCCChhhhhh
Q 015448 106 VVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNE 185 (406)
Q Consensus 106 l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~~~~~~~~ 185 (406)
++.|+.|.|+++....-.++..+.+-. ..+..|..|.|++++......+. .+..+++|+.++.-++....+..
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~-----c~~~~l~~lEL~n~p~i~d~~Le--~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSS-----CSLEGLEVLELDNCPLITDATLE--HLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhcc-----ccccccceeeecCCCCchHHHHH--HHhhCcccceeeeechhhhhhhh
Confidence 677888888877532211111111100 35567888888888887665533 46678888887777776666665
Q ss_pred hhhhhc
Q 015448 186 KDNIVD 191 (406)
Q Consensus 186 ~~~~l~ 191 (406)
......
T Consensus 444 i~~~~~ 449 (483)
T KOG4341|consen 444 ISRFAT 449 (483)
T ss_pred hHHHHh
Confidence 554443
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.76 E-value=0.56 Score=28.05 Aligned_cols=17 Identities=47% Similarity=0.544 Sum_probs=8.3
Q ss_pred CCCcEEEecCCCCCCCC
Q 015448 63 VNLKWLSLVQNKLQSLK 79 (406)
Q Consensus 63 ~~L~~L~Ls~N~l~~l~ 79 (406)
++|++|+|++|.|+.+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 34455555555555444
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.76 E-value=0.56 Score=28.05 Aligned_cols=17 Identities=47% Similarity=0.544 Sum_probs=8.3
Q ss_pred CCCcEEEecCCCCCCCC
Q 015448 63 VNLKWLSLVQNKLQSLK 79 (406)
Q Consensus 63 ~~L~~L~Ls~N~l~~l~ 79 (406)
++|++|+|++|.|+.+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 34455555555555444
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.89 E-value=0.3 Score=45.06 Aligned_cols=85 Identities=19% Similarity=0.296 Sum_probs=44.8
Q ss_pred CCcEEEcCCCCCCC--CcCCCCCCCCCEEEccCCcc-CCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHH
Q 015448 86 KPTVLNVGKNKLRS--MDDVTSVVSLRALILNDNEI-VSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKK 162 (406)
Q Consensus 86 ~L~~L~Ls~N~i~~--l~~l~~l~~L~~L~Ls~N~i-~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~ 162 (406)
.++.++.++..|.. +..+..++.|+.|.+.+|.- .+++ +..+. ...++|+.|+|++|+-.+...+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-L~~l~--------~~~~~L~~L~lsgC~rIT~~GL~-- 170 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-LERLG--------GLAPSLQDLDLSGCPRITDGGLA-- 170 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-HHHhc--------ccccchheeeccCCCeechhHHH--
Confidence 45666666666654 33455666666666666532 2211 11111 13457777777777543333322
Q ss_pred HHhcCCCcccccCcCCChh
Q 015448 163 VKTLLPNLCIFNARPIDRI 181 (406)
Q Consensus 163 ~~~~lp~L~~Ld~~~~~~~ 181 (406)
.+..+++|+.|....++..
T Consensus 171 ~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 171 CLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHHHhhhhHHHHhcCchhh
Confidence 4556677776665554433
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.57 E-value=0.76 Score=27.46 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=9.5
Q ss_pred CCCcEEEcCCCCCCCCc
Q 015448 85 SKPTVLNVGKNKLRSMD 101 (406)
Q Consensus 85 ~~L~~L~Ls~N~i~~l~ 101 (406)
++|++|+|++|.|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45555555555555554
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.57 E-value=0.76 Score=27.46 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=9.5
Q ss_pred CCCcEEEcCCCCCCCCc
Q 015448 85 SKPTVLNVGKNKLRSMD 101 (406)
Q Consensus 85 ~~L~~L~Ls~N~i~~l~ 101 (406)
++|++|+|++|.|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45555555555555554
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=83.51 E-value=0.45 Score=48.35 Aligned_cols=148 Identities=21% Similarity=0.322 Sum_probs=96.9
Q ss_pred CCCCccEEEeeCCC-CCCCC--CC-CCCCCCcEEEccCCC-CCCCC--CC-CCCCCCcEEEecCCCCCC---CCC-CCCC
Q 015448 17 DPNSIKSLSLTHKA-LSDVS--CL-TDFNNLERLDLSSNN-LTSLE--GL-KHCVNLKWLSLVQNKLQS---LKG-IEGL 84 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~-l~~i~--~l-~~l~~L~~L~Ls~N~-l~~l~--~l-~~L~~L~~L~Ls~N~l~~---l~~-l~~l 84 (406)
.+..|+.|..+++. +++.. .| .++++|++|-|+.++ |+... .+ .+++.|+.+++..+.... +-. -.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 36678888887754 34433 23 478999999999986 54432 22 467899999998886552 222 3568
Q ss_pred CCCcEEEcCCCCC-CCC-----c-CCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCch
Q 015448 85 SKPTVLNVGKNKL-RSM-----D-DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYD 157 (406)
Q Consensus 85 ~~L~~L~Ls~N~i-~~l-----~-~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~ 157 (406)
+.|+.|.|++|.+ ++. . .-..+..|..|-|++++...-..+..+ ..+++|+.+.|-+++-..-.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l---------~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL---------SICRNLERIELIDCQDVTKE 442 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH---------hhCcccceeeeechhhhhhh
Confidence 8999999999864 332 1 124567889999999876543333333 25667888887776544333
Q ss_pred hHHHHHHhcCCCccccc
Q 015448 158 KLAKKVKTLLPNLCIFN 174 (406)
Q Consensus 158 ~~~~~~~~~lp~L~~Ld 174 (406)
+.. .+...+|++.+.-
T Consensus 443 ~i~-~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 443 AIS-RFATHLPNIKVHA 458 (483)
T ss_pred hhH-HHHhhCccceehh
Confidence 322 2457888888653
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.58 E-value=1.2 Score=27.22 Aligned_cols=16 Identities=56% Similarity=0.852 Sum_probs=7.5
Q ss_pred CCcEEEccCCCCCCCC
Q 015448 42 NLERLDLSSNNLTSLE 57 (406)
Q Consensus 42 ~L~~L~Ls~N~l~~l~ 57 (406)
+|+.|+|++|.|+.++
T Consensus 3 ~L~~L~L~~NkI~~IE 18 (26)
T smart00365 3 NLEELDLSQNKIKKIE 18 (26)
T ss_pred ccCEEECCCCccceec
Confidence 4444444444444443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.00 E-value=1.1 Score=27.23 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=8.1
Q ss_pred CCCcEEEecCCCCCCCC
Q 015448 63 VNLKWLSLVQNKLQSLK 79 (406)
Q Consensus 63 ~~L~~L~Ls~N~l~~l~ 79 (406)
.+|+.|+|++|.|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 34455555555554443
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.45 E-value=0.44 Score=43.97 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=56.7
Q ss_pred CCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCC-CC--CcCCC-CCCCCCEEEccCCc-cCCccccCCCCCCcEee
Q 015448 63 VNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKL-RS--MDDVT-SVVSLRALILNDNE-IVSICKLDQMKELNTLG 135 (406)
Q Consensus 63 ~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i-~~--l~~l~-~l~~L~~L~Ls~N~-i~~l~~l~~L~~L~~L~ 135 (406)
..++.++-+++.|.... .+..++.|+.|.+.+|.- .+ +..+. ..++|+.|+|++|. ||+-. +..|.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~------ 173 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLL------ 173 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHH------
Confidence 34667777777776433 577778888888887753 33 22333 35788999999874 55432 22221
Q ss_pred CCCCCCCCCEEEcCCCCC-CCchhHHHHHHhcCCCccc
Q 015448 136 MDSYFFNLNNLNLQGNPV-AEYDKLAKKVKTLLPNLCI 172 (406)
Q Consensus 136 Ls~~l~~L~~L~Ls~N~i-~~~~~~~~~~~~~lp~L~~ 172 (406)
.+++|+.|.|.+=+. .........+-..||++.+
T Consensus 174 ---~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I 208 (221)
T KOG3864|consen 174 ---KLKNLRRLHLYDLPYVANLELVQRQLEEALPKCDI 208 (221)
T ss_pred ---HhhhhHHHHhcCchhhhchHHHHHHHHHhCcccce
Confidence 334555555554332 2223333334556777664
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.56 E-value=1.8 Score=26.45 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=8.5
Q ss_pred CCcEEEcCCCCCCCCcC
Q 015448 86 KPTVLNVGKNKLRSMDD 102 (406)
Q Consensus 86 ~L~~L~Ls~N~i~~l~~ 102 (406)
+|+.|++++|+++.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 34555555555555543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.16 E-value=1.7 Score=45.68 Aligned_cols=60 Identities=25% Similarity=0.368 Sum_probs=36.8
Q ss_pred CCCCCcEEEecCCCCCCCCCC----CCCCCCcEEEcCCC--CCCCCcCCCC--CCCCCEEEccCCccC
Q 015448 61 HCVNLKWLSLVQNKLQSLKGI----EGLSKPTVLNVGKN--KLRSMDDVTS--VVSLRALILNDNEIV 120 (406)
Q Consensus 61 ~L~~L~~L~Ls~N~l~~l~~l----~~l~~L~~L~Ls~N--~i~~l~~l~~--l~~L~~L~Ls~N~i~ 120 (406)
+.+.+..|+|++|++..+..+ ...|+|..|+|++| .+...+.+.. ..-|+.|.|.+|+|.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 456667777777777766643 33467777777777 4444333222 234677788888764
No 90
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=64.15 E-value=3 Score=24.28 Aligned_cols=11 Identities=45% Similarity=0.576 Sum_probs=3.8
Q ss_pred CCcEEEecCCC
Q 015448 64 NLKWLSLVQNK 74 (406)
Q Consensus 64 ~L~~L~Ls~N~ 74 (406)
+|++|+|++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 34444444443
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=53.18 E-value=11 Score=23.02 Aligned_cols=13 Identities=54% Similarity=0.744 Sum_probs=7.3
Q ss_pred CCcEEEccCCCCC
Q 015448 42 NLERLDLSSNNLT 54 (406)
Q Consensus 42 ~L~~L~Ls~N~l~ 54 (406)
+|++|+|++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 92
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=50.41 E-value=11 Score=23.04 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=17.5
Q ss_pred hhHHHHHHhcCCCcccccCcC
Q 015448 157 DKLAKKVKTLLPNLCIFNARP 177 (406)
Q Consensus 157 ~~~~~~~~~~lp~L~~Ld~~~ 177 (406)
+.|+..++..+|+|+.||...
T Consensus 2 ~~YR~~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 2 AHYREKVIRLLPQLRKLDXXX 22 (26)
T ss_pred ccHHHHHHHHCCccceecccc
Confidence 357888999999999998754
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.77 E-value=43 Score=42.18 Aligned_cols=36 Identities=19% Similarity=0.407 Sum_probs=30.0
Q ss_pred EcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccccC
Q 015448 91 NVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICKLD 126 (406)
Q Consensus 91 ~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~l~ 126 (406)
+|++|.|+.|+ .|..+++|+.|+|++|.+.+-+.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence 58899999987 3788899999999999998766543
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.05 E-value=34 Score=43.02 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=27.7
Q ss_pred EecCCCCCCCC--CCCCCCCCcEEEcCCCCCCC
Q 015448 69 SLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRS 99 (406)
Q Consensus 69 ~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~ 99 (406)
||++|+|+.|+ .|..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 58999999999 48899999999999998765
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=20.03 E-value=1.1e+02 Score=17.85 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=8.8
Q ss_pred CCCCCEEEcCCCC
Q 015448 140 FFNLNNLNLQGNP 152 (406)
Q Consensus 140 l~~L~~L~Ls~N~ 152 (406)
+++|+.|+|++++
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3567777777765
Done!