Query 015448
Match_columns 406
No_of_seqs 450 out of 2139
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 12:48:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h6u_A Internalin H; cell adhe 99.8 5.9E-20 2E-24 178.3 15.6 168 3-175 47-224 (308)
2 1h6t_A Internalin B; cell adhe 99.8 2.3E-20 8E-25 179.8 9.1 158 14-176 41-208 (291)
3 1xeu_A Internalin C; cellular 99.8 2.7E-20 9.2E-25 176.9 6.9 175 4-179 26-210 (263)
4 1h6t_A Internalin B; cell adhe 99.8 1.8E-19 6.2E-24 173.5 12.2 182 3-184 52-243 (291)
5 1h6u_A Internalin H; cell adhe 99.8 9.3E-20 3.2E-24 176.9 9.7 157 2-158 68-234 (308)
6 1m9s_A Internalin B; cell inva 99.8 1.8E-19 6.2E-24 190.9 11.5 154 17-175 41-204 (605)
7 2o6q_A Variable lymphocyte rec 99.8 5.2E-18 1.8E-22 161.0 19.4 169 3-175 22-212 (270)
8 3rfs_A Internalin B, repeat mo 99.8 3E-18 1E-22 162.9 17.4 156 17-175 39-212 (272)
9 3rfs_A Internalin B, repeat mo 99.8 1E-18 3.4E-23 166.3 13.9 154 3-156 47-220 (272)
10 1m9s_A Internalin B; cell inva 99.8 4.6E-19 1.6E-23 187.8 11.9 180 2-181 48-237 (605)
11 1ozn_A Reticulon 4 receptor; N 99.8 8.4E-18 2.9E-22 160.3 18.5 171 3-176 38-233 (285)
12 4fmz_A Internalin; leucine ric 99.8 2.6E-18 8.8E-23 168.0 14.8 162 13-177 149-320 (347)
13 2o6q_A Variable lymphocyte rec 99.8 1E-17 3.5E-22 158.9 18.0 156 2-157 42-221 (270)
14 3m19_A Variable lymphocyte rec 99.8 2.6E-17 8.8E-22 154.5 19.9 153 3-156 20-194 (251)
15 3e6j_A Variable lymphocyte rec 99.8 1.2E-17 4E-22 155.2 16.7 169 3-182 25-204 (229)
16 1p9a_G Platelet glycoprotein I 99.8 1.1E-17 3.8E-22 161.0 16.5 173 3-180 16-209 (290)
17 3zyi_A Leucine-rich repeat-con 99.8 9E-18 3.1E-22 170.9 16.0 169 3-174 81-296 (452)
18 4fmz_A Internalin; leucine ric 99.8 1.3E-17 4.4E-22 163.0 16.3 135 3-137 50-185 (347)
19 3zyj_A Leucine-rich repeat-con 99.7 1.5E-17 5E-22 168.8 16.2 169 3-174 70-285 (440)
20 4fcg_A Uncharacterized protein 99.7 6E-18 2.1E-22 165.6 12.5 173 3-178 87-287 (328)
21 4ezg_A Putative uncharacterize 99.7 5.2E-18 1.8E-22 153.6 11.1 143 17-176 42-189 (197)
22 1p9a_G Platelet glycoprotein I 99.7 2.8E-17 9.7E-22 158.2 16.2 157 2-158 36-212 (290)
23 1o6v_A Internalin A; bacterial 99.7 1.5E-17 5.2E-22 169.9 14.8 168 3-175 183-360 (466)
24 3zyj_A Leucine-rich repeat-con 99.7 1.9E-17 6.5E-22 167.9 15.4 157 15-174 60-237 (440)
25 1ozn_A Reticulon 4 receptor; N 99.7 6.3E-17 2.2E-21 154.2 17.2 170 4-177 18-210 (285)
26 1a9n_A U2A', U2A'; complex (nu 99.7 5.1E-18 1.8E-22 150.9 8.5 161 1-191 1-163 (176)
27 1o6v_A Internalin A; bacterial 99.7 2.6E-17 9E-22 168.1 15.0 158 14-176 172-339 (466)
28 1xeu_A Internalin C; cellular 99.7 2.4E-18 8.3E-23 163.4 4.6 157 14-176 14-180 (263)
29 2z62_A TOLL-like receptor 4, v 99.7 4.6E-17 1.6E-21 154.4 13.2 119 19-137 28-157 (276)
30 3zyi_A Leucine-rich repeat-con 99.7 1.2E-16 4.1E-21 162.6 16.2 157 16-175 72-249 (452)
31 4fcg_A Uncharacterized protein 99.7 5.3E-17 1.8E-21 158.9 12.5 170 3-176 110-309 (328)
32 2xwt_C Thyrotropin receptor; s 99.7 3.8E-17 1.3E-21 151.9 10.5 157 17-176 29-213 (239)
33 3o6n_A APL1; leucine-rich repe 99.7 3.4E-16 1.2E-20 155.8 17.6 96 4-99 76-179 (390)
34 3bz5_A Internalin-J, INLJ; leu 99.7 4.1E-16 1.4E-20 159.6 18.3 163 3-175 48-240 (457)
35 3bz5_A Internalin-J, INLJ; leu 99.7 5.5E-16 1.9E-20 158.7 19.2 160 3-173 70-259 (457)
36 3m19_A Variable lymphocyte rec 99.7 5.8E-16 2E-20 145.2 17.7 157 19-180 14-193 (251)
37 3oja_B Anopheles plasmodium-re 99.7 2.9E-16 9.9E-21 165.5 17.3 97 3-99 81-185 (597)
38 4ezg_A Putative uncharacterize 99.7 7.4E-17 2.5E-21 146.0 10.5 141 3-155 50-195 (197)
39 2o6s_A Variable lymphocyte rec 99.7 2E-16 6.8E-21 143.9 13.3 139 5-156 15-163 (208)
40 2v9t_B SLIT homolog 2 protein 99.7 3.7E-16 1.3E-20 144.3 15.2 144 3-159 17-170 (220)
41 2xwt_C Thyrotropin receptor; s 99.7 8.9E-17 3.1E-21 149.4 10.7 168 3-176 37-234 (239)
42 2z66_A Variable lymphocyte rec 99.7 6.5E-17 2.2E-21 155.6 9.9 157 16-175 25-206 (306)
43 3o6n_A APL1; leucine-rich repe 99.7 6.3E-16 2.2E-20 153.8 17.3 77 3-79 99-181 (390)
44 3oja_B Anopheles plasmodium-re 99.7 4.2E-16 1.4E-20 164.3 16.9 157 2-158 104-318 (597)
45 2z66_A Variable lymphocyte rec 99.7 1.2E-16 4.2E-21 153.6 10.5 174 2-178 33-233 (306)
46 2z80_A TOLL-like receptor 2, v 99.7 2E-16 7E-21 155.4 12.3 169 4-176 38-230 (353)
47 2v70_A SLIT-2, SLIT homolog 2 99.7 4.4E-16 1.5E-20 143.8 13.8 144 3-159 17-171 (220)
48 2id5_A Lingo-1, leucine rich r 99.7 5.7E-16 2E-20 158.1 15.5 171 3-176 38-256 (477)
49 2z80_A TOLL-like receptor 2, v 99.7 1.9E-16 6.6E-21 155.6 11.0 154 2-155 57-236 (353)
50 2xot_A Amphoterin-induced prot 99.7 4.4E-16 1.5E-20 154.1 12.4 134 3-137 24-171 (361)
51 2id5_A Lingo-1, leucine rich r 99.6 6.6E-16 2.2E-20 157.6 13.7 158 16-176 29-208 (477)
52 2z62_A TOLL-like receptor 4, v 99.6 4.3E-16 1.5E-20 147.8 11.4 176 2-180 33-238 (276)
53 1xku_A Decorin; proteoglycan, 99.6 2E-15 7E-20 146.8 16.3 152 18-174 51-222 (330)
54 3oja_A Leucine-rich immune mol 99.6 1.3E-16 4.5E-21 164.5 6.9 170 2-175 39-244 (487)
55 1wwl_A Monocyte differentiatio 99.6 3.7E-16 1.3E-20 151.4 9.5 140 18-157 94-269 (312)
56 2ft3_A Biglycan; proteoglycan, 99.6 2.3E-15 7.8E-20 146.7 14.9 154 18-176 53-249 (332)
57 1xku_A Decorin; proteoglycan, 99.6 5.8E-15 2E-19 143.5 17.7 171 2-177 57-249 (330)
58 3oja_A Leucine-rich immune mol 99.6 2.9E-16 9.7E-21 162.0 8.6 156 17-176 32-222 (487)
59 3o53_A Protein LRIM1, AGAP0063 99.6 1.6E-16 5.4E-21 154.3 6.2 168 3-174 40-243 (317)
60 3cvr_A Invasion plasmid antige 99.6 5.8E-15 2E-19 155.2 18.5 167 2-183 64-247 (571)
61 3o53_A Protein LRIM1, AGAP0063 99.6 3E-16 1E-20 152.3 7.2 170 4-176 65-270 (317)
62 1jl5_A Outer protein YOPM; leu 99.6 1E-14 3.5E-19 149.1 18.9 135 19-157 131-273 (454)
63 4g8a_A TOLL-like receptor 4; l 99.6 2.1E-15 7.2E-20 157.6 13.9 129 16-156 49-188 (635)
64 4glp_A Monocyte differentiatio 99.6 7.6E-16 2.6E-20 148.9 9.3 140 17-156 115-287 (310)
65 2ell_A Acidic leucine-rich nuc 99.6 1E-15 3.6E-20 134.5 9.3 132 16-156 21-162 (168)
66 1ogq_A PGIP-2, polygalacturona 99.6 4.6E-16 1.6E-20 151.0 7.5 157 15-176 72-252 (313)
67 2z81_A CD282 antigen, TOLL-lik 99.6 5.2E-15 1.8E-19 153.2 15.4 168 3-176 316-505 (549)
68 2ft3_A Biglycan; proteoglycan, 99.6 6.7E-15 2.3E-19 143.4 15.1 135 19-157 33-188 (332)
69 3t6q_A CD180 antigen; protein- 99.6 5.3E-15 1.8E-19 155.1 15.4 170 4-176 261-457 (606)
70 3cvr_A Invasion plasmid antige 99.6 1.1E-14 3.9E-19 153.0 17.4 145 2-158 85-247 (571)
71 1ds9_A Outer arm dynein; leuci 99.6 2.8E-18 9.6E-23 155.5 -9.1 159 19-186 23-192 (198)
72 2o6s_A Variable lymphocyte rec 99.6 3E-14 1E-18 129.4 17.6 141 21-177 9-157 (208)
73 3e6j_A Variable lymphocyte rec 99.6 1.5E-14 5.3E-19 134.1 15.9 146 20-181 20-174 (229)
74 3v47_A TOLL-like receptor 5B a 99.6 6.3E-15 2.2E-19 149.0 14.0 91 81-174 295-401 (455)
75 2ell_A Acidic leucine-rich nuc 99.6 3.3E-15 1.1E-19 131.3 10.4 134 38-180 21-159 (168)
76 1ziw_A TOLL-like receptor 3; i 99.6 8.1E-15 2.8E-19 155.9 15.4 155 3-158 10-188 (680)
77 1jl5_A Outer protein YOPM; leu 99.6 2.8E-14 9.5E-19 145.9 18.5 148 18-176 90-245 (454)
78 2je0_A Acidic leucine-rich nuc 99.6 1.5E-15 5.1E-20 130.8 7.7 126 41-175 17-147 (149)
79 1wwl_A Monocyte differentiatio 99.6 1.4E-15 4.9E-20 147.2 8.5 169 3-176 101-304 (312)
80 2z81_A CD282 antigen, TOLL-lik 99.6 4.9E-15 1.7E-19 153.4 12.7 167 5-175 13-203 (549)
81 2z7x_B TOLL-like receptor 1, v 99.6 1.2E-14 4.1E-19 149.7 15.3 158 20-180 303-482 (520)
82 1ogq_A PGIP-2, polygalacturona 99.6 9E-16 3.1E-20 148.9 6.4 155 19-177 50-230 (313)
83 4glp_A Monocyte differentiatio 99.6 2.5E-15 8.4E-20 145.3 9.4 152 3-155 123-308 (310)
84 2je0_A Acidic leucine-rich nuc 99.6 3.4E-15 1.2E-19 128.6 9.1 121 16-136 14-147 (149)
85 2v9t_B SLIT homolog 2 protein 99.6 1.8E-14 6.2E-19 132.9 14.6 142 22-180 14-166 (220)
86 2xot_A Amphoterin-induced prot 99.6 1.3E-14 4.4E-19 143.5 14.1 157 21-182 20-205 (361)
87 3v47_A TOLL-like receptor 5B a 99.6 1.4E-14 4.7E-19 146.5 14.3 121 17-137 28-162 (455)
88 3g06_A SSPH2 (leucine-rich rep 99.6 5.4E-14 1.8E-18 149.3 19.4 69 107-181 221-299 (622)
89 3vq2_A TLR4, TOLL-like recepto 99.6 1.4E-14 4.8E-19 151.9 14.8 153 5-158 19-198 (606)
90 1ziw_A TOLL-like receptor 3; i 99.6 1.7E-14 5.8E-19 153.4 15.6 156 3-158 387-601 (680)
91 3vq2_A TLR4, TOLL-like recepto 99.6 2.8E-15 9.5E-20 157.2 9.4 153 18-174 375-551 (606)
92 4ecn_A Leucine-rich repeat pro 99.6 1.2E-14 4.1E-19 159.7 14.6 64 16-79 570-635 (876)
93 3t6q_A CD180 antigen; protein- 99.6 1.9E-14 6.4E-19 150.9 14.9 143 16-158 30-196 (606)
94 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 5.2E-14 1.8E-18 146.8 17.5 143 16-174 350-503 (562)
95 2v70_A SLIT-2, SLIT homolog 2 99.6 3E-14 1E-18 131.4 13.9 144 21-181 13-168 (220)
96 4eco_A Uncharacterized protein 99.6 3.1E-14 1E-18 151.3 15.4 151 20-176 403-595 (636)
97 3g06_A SSPH2 (leucine-rich rep 99.6 8.7E-14 3E-18 147.7 18.8 71 4-79 47-117 (622)
98 2wfh_A SLIT homolog 2 protein 99.6 4.1E-14 1.4E-18 128.0 14.0 125 22-159 13-144 (193)
99 4ecn_A Leucine-rich repeat pro 99.5 2.9E-14 1E-18 156.6 15.2 171 2-176 578-784 (876)
100 2z63_A TOLL-like receptor 4, v 99.5 3E-14 1E-18 147.8 13.5 143 16-158 25-194 (570)
101 1w8a_A SLIT protein; signaling 99.5 6.4E-14 2.2E-18 126.4 14.0 124 22-159 11-144 (192)
102 4g8a_A TOLL-like receptor 4; l 99.5 1.7E-14 6E-19 150.6 11.1 122 2-123 57-189 (635)
103 4eco_A Uncharacterized protein 99.5 1.1E-14 3.7E-19 154.8 9.6 96 4-99 312-416 (636)
104 2o6r_A Variable lymphocyte rec 99.5 2.5E-13 8.7E-18 120.2 16.7 128 20-158 8-141 (177)
105 2z7x_B TOLL-like receptor 1, v 99.5 9.1E-14 3.1E-18 143.1 15.4 119 17-137 322-452 (520)
106 2z63_A TOLL-like receptor 4, v 99.5 1.2E-14 4.1E-19 150.8 8.5 157 16-175 344-525 (570)
107 2wfh_A SLIT homolog 2 protein 99.5 1.2E-13 4.1E-18 124.9 13.0 122 2-124 15-143 (193)
108 2ca6_A RAN GTPase-activating p 99.5 2.6E-15 8.9E-20 149.3 1.9 61 16-76 57-135 (386)
109 3rgz_A Protein brassinosteroid 99.5 5.4E-14 1.9E-18 152.4 12.2 96 3-98 132-236 (768)
110 3j0a_A TOLL-like receptor 5; m 99.5 4.2E-14 1.4E-18 154.9 11.2 151 4-156 11-189 (844)
111 3rgz_A Protein brassinosteroid 99.5 7.5E-14 2.6E-18 151.4 12.8 158 16-176 175-351 (768)
112 2o6r_A Variable lymphocyte rec 99.5 4.2E-13 1.4E-17 118.8 14.6 120 3-123 13-140 (177)
113 1dce_A Protein (RAB geranylger 99.5 4.6E-14 1.6E-18 148.3 9.7 121 42-174 442-566 (567)
114 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 5.4E-13 1.8E-17 139.1 17.3 132 42-177 332-482 (562)
115 3j0a_A TOLL-like receptor 5; m 99.5 2.4E-13 8.3E-18 148.9 15.4 104 19-122 266-377 (844)
116 1dce_A Protein (RAB geranylger 99.5 7.8E-14 2.7E-18 146.6 9.5 106 19-124 441-550 (567)
117 4ay9_X Follicle-stimulating ho 99.5 1.2E-13 4E-18 136.0 9.9 171 5-179 17-237 (350)
118 1w8a_A SLIT protein; signaling 99.4 4.4E-13 1.5E-17 120.8 12.1 122 2-124 13-143 (192)
119 1a9n_A U2A', U2A'; complex (nu 99.4 5.2E-14 1.8E-18 124.8 3.7 120 2-121 24-154 (176)
120 2ca6_A RAN GTPase-activating p 99.4 5E-14 1.7E-18 140.0 3.0 120 18-137 31-195 (386)
121 4b8c_D Glucose-repressible alc 99.4 6.9E-14 2.4E-18 151.0 3.3 107 16-122 221-331 (727)
122 2ast_B S-phase kinase-associat 99.4 2.5E-14 8.6E-19 138.8 -0.6 135 18-152 92-258 (336)
123 2r9u_A Variable lymphocyte rec 99.4 6.5E-12 2.2E-16 111.6 13.1 101 44-158 15-122 (174)
124 4ay9_X Follicle-stimulating ho 99.4 2E-12 6.8E-17 127.1 10.7 135 22-158 12-171 (350)
125 3g39_A Variable lymphocyte rec 99.4 6.4E-12 2.2E-16 111.1 13.0 102 43-158 11-119 (170)
126 4b8c_D Glucose-repressible alc 99.4 7.7E-13 2.6E-17 142.9 8.2 110 36-157 219-332 (727)
127 2r9u_A Variable lymphocyte rec 99.3 9.3E-12 3.2E-16 110.6 13.1 101 21-123 14-121 (174)
128 2ast_B S-phase kinase-associat 99.3 3.5E-13 1.2E-17 130.7 3.0 158 19-179 70-258 (336)
129 3goz_A Leucine-rich repeat-con 99.3 4E-13 1.4E-17 132.6 2.7 81 19-99 22-123 (362)
130 3g39_A Variable lymphocyte rec 99.3 2.1E-11 7.3E-16 107.7 12.4 102 20-123 10-118 (170)
131 1ds9_A Outer arm dynein; leuci 99.3 6.9E-15 2.3E-19 133.1 -10.7 134 16-157 45-188 (198)
132 2ifg_A High affinity nerve gro 99.3 2.6E-11 8.8E-16 118.5 13.6 102 46-158 13-120 (347)
133 3sb4_A Hypothetical leucine ri 99.3 5.3E-12 1.8E-16 122.9 8.5 151 18-173 48-326 (329)
134 3goz_A Leucine-rich repeat-con 99.3 2.1E-12 7.2E-17 127.4 4.6 176 2-177 27-262 (362)
135 1z7x_W Ribonuclease inhibitor; 99.1 3.8E-12 1.3E-16 128.6 0.0 115 62-176 255-406 (461)
136 1z7x_W Ribonuclease inhibitor; 99.1 1.2E-11 4.1E-16 124.9 3.1 162 17-178 26-237 (461)
137 2ifg_A High affinity nerve gro 99.1 1.9E-10 6.5E-15 112.3 10.1 103 22-125 11-121 (347)
138 3sb4_A Hypothetical leucine ri 99.0 1.6E-09 5.4E-14 105.3 10.2 84 62-147 225-327 (329)
139 3un9_A NLR family member X1; l 99.0 1.6E-11 5.6E-16 122.3 -4.5 120 18-137 71-219 (372)
140 3ogk_B Coronatine-insensitive 98.8 3.1E-09 1.1E-13 110.5 5.2 156 18-175 163-385 (592)
141 3rw6_A Nuclear RNA export fact 98.7 1.6E-08 5.4E-13 96.2 8.0 112 59-180 137-263 (267)
142 3ogk_B Coronatine-insensitive 98.7 4.9E-09 1.7E-13 109.1 3.7 156 19-176 138-326 (592)
143 4fdw_A Leucine rich hypothetic 98.7 7.4E-08 2.5E-12 96.7 11.4 151 15-175 176-352 (401)
144 4fdw_A Leucine rich hypothetic 98.7 8.7E-08 3E-12 96.2 11.5 147 19-175 157-330 (401)
145 2p1m_B Transport inhibitor res 98.7 1.9E-09 6.3E-14 112.2 -1.1 100 18-117 104-221 (594)
146 3un9_A NLR family member X1; l 98.7 8E-10 2.8E-14 110.0 -3.7 133 18-158 100-256 (372)
147 2p1m_B Transport inhibitor res 98.4 2E-08 6.8E-13 104.3 -1.5 159 17-179 312-517 (594)
148 2ra8_A Uncharacterized protein 98.4 1.4E-07 4.7E-12 93.6 3.5 149 18-176 138-315 (362)
149 1io0_A Tropomodulin; LRR prote 98.3 4.9E-08 1.7E-12 87.3 -1.1 114 36-157 31-167 (185)
150 2ra8_A Uncharacterized protein 98.3 3.2E-07 1.1E-11 91.0 4.5 157 17-177 105-288 (362)
151 1io0_A Tropomodulin; LRR prote 98.3 3.6E-08 1.2E-12 88.2 -2.2 115 59-179 32-162 (185)
152 3rw6_A Nuclear RNA export fact 98.1 1E-06 3.5E-11 83.6 4.1 76 46-121 148-234 (267)
153 3e4g_A ATP synthase subunit S, 98.0 1.7E-06 5.9E-11 77.0 2.3 100 63-172 61-171 (176)
154 3e4g_A ATP synthase subunit S, 97.5 1.7E-05 5.9E-10 70.5 0.4 80 42-121 62-154 (176)
155 4h09_A Hypothetical leucine ri 97.5 0.00039 1.3E-08 68.1 9.9 78 36-115 235-318 (379)
156 4gt6_A Cell surface protein; l 97.3 0.0012 4E-08 65.3 11.1 101 36-152 260-368 (394)
157 4h09_A Hypothetical leucine ri 97.3 0.0019 6.3E-08 63.2 12.5 98 36-136 212-317 (379)
158 4fs7_A Uncharacterized protein 97.3 0.00091 3.1E-08 66.1 10.0 146 18-172 229-392 (394)
159 4gt6_A Cell surface protein; l 97.2 0.00086 2.9E-08 66.2 9.3 100 16-119 262-369 (394)
160 1pgv_A TMD-1, tropomodulin TMD 97.1 8.3E-05 2.8E-09 67.2 -0.0 111 36-154 36-170 (197)
161 4fs7_A Uncharacterized protein 96.9 0.0058 2E-07 60.2 12.0 152 16-175 182-373 (394)
162 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00036 1.2E-08 63.0 2.0 126 59-190 37-179 (197)
163 3rfe_A Platelet glycoprotein I 96.3 0.0064 2.2E-07 50.8 6.2 52 45-97 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.1 0.0099 3.4E-07 49.6 6.3 55 66-122 11-70 (130)
165 2lz0_A Uncharacterized protein 44.1 34 0.0012 26.5 5.1 36 36-72 15-52 (100)
166 2lz0_A Uncharacterized protein 31.6 66 0.0023 24.8 4.9 35 81-116 16-52 (100)
No 1
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=5.9e-20 Score=178.26 Aligned_cols=168 Identities=20% Similarity=0.323 Sum_probs=128.4
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE 82 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~ 82 (406)
+++.+.+..+.....+++|+.|+|++|.|+.++.+..+++|++|+|++|.|+.++.+..+++|++|+|++|.|+.++.+.
T Consensus 47 ~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~ 126 (308)
T 1h6u_A 47 SAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126 (308)
T ss_dssp ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGT
T ss_pred EeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhc
Confidence 34555666665556677888888888888877767778888888888888887777777888888888888888777777
Q ss_pred CCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCC
Q 015448 83 GLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNP 152 (406)
Q Consensus 83 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~ 152 (406)
.+++|++|+|++|.++.++.+..+++|++|+|++|.++.++.+..+++|+.|+|+ ..+++|++|+|++|.
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ 206 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSC
T ss_pred CCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCc
Confidence 7888888888888888777777778888888888888877777777888888777 466778888888888
Q ss_pred CCCchhHHHHHHhcCCCcccccC
Q 015448 153 VAEYDKLAKKVKTLLPNLCIFNA 175 (406)
Q Consensus 153 i~~~~~~~~~~~~~lp~L~~Ld~ 175 (406)
+..++. +..+++|+.|+.
T Consensus 207 l~~~~~-----l~~l~~L~~L~l 224 (308)
T 1h6u_A 207 ISDVSP-----LANTSNLFIVTL 224 (308)
T ss_dssp CCBCGG-----GTTCTTCCEEEE
T ss_pred cCcccc-----ccCCCCCCEEEc
Confidence 877764 456777776654
No 2
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.3e-20 Score=179.80 Aligned_cols=158 Identities=26% Similarity=0.407 Sum_probs=123.7
Q ss_pred CCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcC
Q 015448 14 KTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVG 93 (406)
Q Consensus 14 ~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls 93 (406)
....+++|+.|++++|.+..++.+..+++|++|+|++|.|+.++.+..+++|++|+|++|.++.++.+..+++|++|+|+
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECC
Confidence 33446678888888888887777777888888888888888777677788888888888888877777778888888888
Q ss_pred CCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCCCCCchhHHHHH
Q 015448 94 KNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNPVAEYDKLAKKV 163 (406)
Q Consensus 94 ~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i~~~~~~~~~~ 163 (406)
+|.|+.++.+..+++|++|+|++|.|+.++.+..+++|++|+|+ ..+++|+.|+|++|.|+.++.
T Consensus 121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~----- 195 (291)
T 1h6t_A 121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA----- 195 (291)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-----
T ss_pred CCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChh-----
Confidence 88888777777788888888888888877777778888888877 567788888888888888764
Q ss_pred HhcCCCcccccCc
Q 015448 164 KTLLPNLCIFNAR 176 (406)
Q Consensus 164 ~~~lp~L~~Ld~~ 176 (406)
+..+++|+.|+..
T Consensus 196 l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 196 LAGLKNLDVLELF 208 (291)
T ss_dssp GTTCTTCSEEEEE
T ss_pred hccCCCCCEEECc
Confidence 4667888876643
No 3
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=2.7e-20 Score=176.92 Aligned_cols=175 Identities=22% Similarity=0.297 Sum_probs=136.6
Q ss_pred cccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCC
Q 015448 4 LSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83 (406)
Q Consensus 4 Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~ 83 (406)
|+.+.+..+.....+++|+.|++++|.|+.++.+..+++|++|+|++|.|+.++++..+++|++|+|++|.|+.++.+..
T Consensus 26 l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~ 105 (263)
T 1xeu_A 26 LGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS 105 (263)
T ss_dssp HTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC
T ss_pred hcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc
Confidence 44555655555566889999999999999999888999999999999999999889999999999999999999987666
Q ss_pred CCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCCC
Q 015448 84 LSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNPV 153 (406)
Q Consensus 84 l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i 153 (406)
++|++|+|++|.|+.++.+..+++|+.|+|++|.|+.++.+..+++|++|+|+ ..+++|+.|+|++|++
T Consensus 106 -~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 106 -ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp -SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEE
T ss_pred -CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcc
Confidence 99999999999999998899999999999999999998877777777766666 4556666677776666
Q ss_pred CCchhHHHHHHhcCCCcccccCcCCC
Q 015448 154 AEYDKLAKKVKTLLPNLCIFNARPID 179 (406)
Q Consensus 154 ~~~~~~~~~~~~~lp~L~~Ld~~~~~ 179 (406)
...+......+...+.+..+++..+.
T Consensus 185 ~~~~~~~~~~l~~~~~l~~l~~~~i~ 210 (263)
T 1xeu_A 185 VNEPVKYQPELYITNTVKDPDGRWIS 210 (263)
T ss_dssp ECCCEECCSEEEEECCCBCTTSCBCC
T ss_pred cCCccccccceEECCeeecCCCCCcC
Confidence 55542111111223445555555544
No 4
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=1.8e-19 Score=173.54 Aligned_cols=182 Identities=22% Similarity=0.250 Sum_probs=158.7
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE 82 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~ 82 (406)
+++.+.+..+.....+++|++|+|++|.|+.++.+..+++|++|+|++|.++.++.+..+++|++|+|++|.|+.++.+.
T Consensus 52 ~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~ 131 (291)
T 1h6t_A 52 IANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131 (291)
T ss_dssp ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGG
T ss_pred EccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhc
Confidence 46667777777777789999999999999999889999999999999999999999999999999999999999998899
Q ss_pred CCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCC
Q 015448 83 GLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNP 152 (406)
Q Consensus 83 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~ 152 (406)
.+++|+.|+|++|.|+.++.+..+++|++|+|++|.|+.++.+..+++|++|+|+ ..+++|+.|+|++|+
T Consensus 132 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred CCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence 9999999999999999998899999999999999999999889999999999998 678899999999999
Q ss_pred CCCchhHHHHHHhcCCCcccccCcCCChhhhh
Q 015448 153 VAEYDKLAKKVKTLLPNLCIFNARPIDRITKN 184 (406)
Q Consensus 153 i~~~~~~~~~~~~~lp~L~~Ld~~~~~~~~~~ 184 (406)
+...+......+..++.+..+++.++......
T Consensus 212 i~~~~~~~~~~l~~~~~l~~l~~~~i~~~~~~ 243 (291)
T 1h6t_A 212 CLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 243 (291)
T ss_dssp EECCCEECCSEEEEECCCBCTTSCBCCEEEEG
T ss_pred ccCCccccccccEEcceEECCCCCCcCCCeec
Confidence 98766433222334566777777777655443
No 5
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=9.3e-20 Score=176.89 Aligned_cols=157 Identities=22% Similarity=0.336 Sum_probs=146.2
Q ss_pred CccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCC
Q 015448 2 TRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI 81 (406)
Q Consensus 2 ~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l 81 (406)
++|+.|.+..+.+...+++|++|+|++|.|+.++.+..+++|++|+|++|.|+.++.+..+++|++|+|++|.++.++.+
T Consensus 68 L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l 147 (308)
T 1h6u_A 68 LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL 147 (308)
T ss_dssp EECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred EEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccc
Confidence 35677888877777889999999999999999999999999999999999999998899999999999999999999889
Q ss_pred CCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCC
Q 015448 82 EGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGN 151 (406)
Q Consensus 82 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N 151 (406)
..+++|+.|+|++|.++.++.+..+++|+.|+|++|.|+.++.+..+++|++|+|+ ..+++|+.|+|++|
T Consensus 148 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 148 AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred cCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCC
Confidence 99999999999999999998899999999999999999999989999999999998 67899999999999
Q ss_pred CCCCchh
Q 015448 152 PVAEYDK 158 (406)
Q Consensus 152 ~i~~~~~ 158 (406)
+++..+.
T Consensus 228 ~i~~~~~ 234 (308)
T 1h6u_A 228 TITNQPV 234 (308)
T ss_dssp EEECCCE
T ss_pred eeecCCe
Confidence 9988664
No 6
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1.8e-19 Score=190.87 Aligned_cols=154 Identities=27% Similarity=0.432 Sum_probs=82.8
Q ss_pred CCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCC
Q 015448 17 DPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNK 96 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~ 96 (406)
.+.+|+.|+|++|.|..++.+..|++|+.|+|++|.|+.++++..|++|+.|+|++|.|..++.+..|++|+.|+|++|.
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~ 120 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNG 120 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSC
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCC
Confidence 34455555555555555555555555555555555555554455555555555555555555555555555555555555
Q ss_pred CCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCCCCCchhHHHHHHhc
Q 015448 97 LRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNPVAEYDKLAKKVKTL 166 (406)
Q Consensus 97 i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~ 166 (406)
|..++.+..+++|+.|+|++|.|+.++.+..|++|+.|+|+ ..+++|+.|+|++|.|..++. +..
T Consensus 121 l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~-----l~~ 195 (605)
T 1m9s_A 121 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-----LAG 195 (605)
T ss_dssp CCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-----GTT
T ss_pred CCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChH-----Hcc
Confidence 55555555555555555555555555445555555555554 345556666666666655542 344
Q ss_pred CCCcccccC
Q 015448 167 LPNLCIFNA 175 (406)
Q Consensus 167 lp~L~~Ld~ 175 (406)
|++|+.|+.
T Consensus 196 l~~L~~L~L 204 (605)
T 1m9s_A 196 LKNLDVLEL 204 (605)
T ss_dssp CTTCSEEEC
T ss_pred CCCCCEEEc
Confidence 555555443
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=5.2e-18 Score=160.98 Aligned_cols=169 Identities=26% Similarity=0.334 Sum_probs=142.4
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCC
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL 78 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l 78 (406)
+++.+.+..+. ...+.+|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.++. |..+++|++|+|++|.|+.+
T Consensus 22 ~~~~~~l~~ip-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~ 100 (270)
T 2o6q_A 22 DCSSKKLTAIP-SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100 (270)
T ss_dssp ECTTSCCSSCC-SCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC
T ss_pred EccCCCCCccC-CCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC
Confidence 45556665543 334678999999999999987 68899999999999999998874 68899999999999999988
Q ss_pred C--CCCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCC
Q 015448 79 K--GIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYF 140 (406)
Q Consensus 79 ~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l 140 (406)
+ .+..+++|++|+|++|.|+.++. +..+++|++|+|++|.|+.++. +..+++|++|+|+ ..+
T Consensus 101 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 180 (270)
T 2o6q_A 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180 (270)
T ss_dssp CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence 8 37889999999999999999863 7889999999999999998875 7889999999998 467
Q ss_pred CCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccC
Q 015448 141 FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA 175 (406)
Q Consensus 141 ~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~ 175 (406)
++|+.|+|++|.+..++.. .+..+++|+.|+.
T Consensus 181 ~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l 212 (270)
T 2o6q_A 181 TELKTLKLDNNQLKRVPEG---AFDSLEKLKMLQL 212 (270)
T ss_dssp TTCCEEECCSSCCSCCCTT---TTTTCTTCCEEEC
T ss_pred CCcCEEECCCCcCCcCCHH---HhccccCCCEEEe
Confidence 8999999999999988753 2567888887654
No 8
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=3e-18 Score=162.95 Aligned_cols=156 Identities=27% Similarity=0.359 Sum_probs=89.1
Q ss_pred CCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCC--CCCCCCCcEEEcCC
Q 015448 17 DPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGK 94 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~ 94 (406)
.+.+|+.|++++|.++.++.+..+++|++|+|++|.++.++.+..+++|++|+|++|.|+.++. +..+++|++|+|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 3455555555555555555555555555555555555555555555555555555555555542 45555555555555
Q ss_pred CCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCCCCCCEEEcCCCCCCCchh
Q 015448 95 NKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYFFNLNNLNLQGNPVAEYDK 158 (406)
Q Consensus 95 N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i~~~~~ 158 (406)
|.|+.++. +..+++|++|+|++|.++.++. +..+++|++|+|+ ..+++|+.|+|++|.+..++.
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 55555442 4555555555555555555543 4455555555555 345677777777777766654
Q ss_pred HHHHHHhcCCCcccccC
Q 015448 159 LAKKVKTLLPNLCIFNA 175 (406)
Q Consensus 159 ~~~~~~~~lp~L~~Ld~ 175 (406)
. .+..+++|+.|+.
T Consensus 199 ~---~~~~l~~L~~L~l 212 (272)
T 3rfs_A 199 G---VFDRLTSLQYIWL 212 (272)
T ss_dssp T---TTTTCTTCCEEEC
T ss_pred H---HHhCCcCCCEEEc
Confidence 2 2455666665554
No 9
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=1e-18 Score=166.25 Aligned_cols=154 Identities=29% Similarity=0.376 Sum_probs=139.1
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCCC
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKG 80 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~~ 80 (406)
.++.+.+........+++|++|+|++|.++.++.+..+++|++|+|++|.|+.++. |..+++|++|+|++|.++.++.
T Consensus 47 ~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 126 (272)
T 3rfs_A 47 IANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126 (272)
T ss_dssp ECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred eeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH
Confidence 45666777777777899999999999999999989999999999999999999875 8899999999999999998883
Q ss_pred --CCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCCCC
Q 015448 81 --IEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYFFN 142 (406)
Q Consensus 81 --l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l~~ 142 (406)
+..+++|++|+|++|.|+.++. +..+++|++|+|++|.|+.++. +..+++|++|+|+ ..+++
T Consensus 127 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 8899999999999999999874 7889999999999999999876 7889999999998 56889
Q ss_pred CCEEEcCCCCCCCc
Q 015448 143 LNNLNLQGNPVAEY 156 (406)
Q Consensus 143 L~~L~Ls~N~i~~~ 156 (406)
|+.|+|++|++.+.
T Consensus 207 L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 207 LQYIWLHDNPWDCT 220 (272)
T ss_dssp CCEEECCSSCBCCC
T ss_pred CCEEEccCCCcccc
Confidence 99999999998764
No 10
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=4.6e-19 Score=187.76 Aligned_cols=180 Identities=23% Similarity=0.261 Sum_probs=156.6
Q ss_pred CccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCC
Q 015448 2 TRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI 81 (406)
Q Consensus 2 ~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l 81 (406)
+.|+.+.|..+..+..+++|+.|+|++|.|+.++.+..|++|++|+|++|.|+.++.+..|++|+.|+|++|.|..++.+
T Consensus 48 L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l 127 (605)
T 1m9s_A 48 IIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGL 127 (605)
T ss_dssp CBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGGG
T ss_pred EECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCccc
Confidence 45677778777777889999999999999999988999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCC
Q 015448 82 EGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGN 151 (406)
Q Consensus 82 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N 151 (406)
..|++|+.|+|++|.|+.++.+..+++|+.|+|++|.|+.++.+..|++|+.|+|+ ..+++|+.|+|++|
T Consensus 128 ~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 128 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp GGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred cCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence 99999999999999999998899999999999999999999889999999999998 67899999999999
Q ss_pred CCCCchhHHHHHHhcCCCcccccCcCCChh
Q 015448 152 PVAEYDKLAKKVKTLLPNLCIFNARPIDRI 181 (406)
Q Consensus 152 ~i~~~~~~~~~~~~~lp~L~~Ld~~~~~~~ 181 (406)
++...+......+..++.|..+++..+...
T Consensus 208 ~l~~~p~~~~~~l~~~~~l~~l~g~~~~~~ 237 (605)
T 1m9s_A 208 ECLNKPINHQSNLVVPNTVKNTDGSLVTPE 237 (605)
T ss_dssp EEECCCCCCCSSCEEECCCBCSSSCBCCCS
T ss_pred cCcCCcccccccEEecccccccCCCCcCch
Confidence 998775432112233455555666665433
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=8.4e-18 Score=160.33 Aligned_cols=171 Identities=24% Similarity=0.250 Sum_probs=121.7
Q ss_pred ccccccccCCCC--CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCC-CCCCC--CCCCCCCCcEEEecCCCC
Q 015448 3 RLSTQQILKDNK--TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNN-LTSLE--GLKHCVNLKWLSLVQNKL 75 (406)
Q Consensus 3 ~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~-l~~l~--~l~~L~~L~~L~Ls~N~l 75 (406)
+|+.+.|..+.+ +..+++|++|+|++|.|+.+. .+..+++|++|+|++|. ++.++ .+..+++|++|+|++|.+
T Consensus 38 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l 117 (285)
T 1ozn_A 38 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117 (285)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcC
Confidence 345555555542 455677777777777777663 66777777777777776 76663 367777788888888877
Q ss_pred CCCC--CCCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------
Q 015448 76 QSLK--GIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------ 137 (406)
Q Consensus 76 ~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------ 137 (406)
+.++ .+..+++|++|+|++|.|+.++. +..+++|++|+|++|.|+.++. +..+++|++|+|+
T Consensus 118 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 197 (285)
T 1ozn_A 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHc
Confidence 7665 36777788888888888777653 6677788888888888877764 6777788888777
Q ss_pred CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448 138 SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 138 ~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~ 176 (406)
..+++|+.|+|++|.+..++.. .+..+++|+.|+..
T Consensus 198 ~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 198 RDLGRLMTLYLFANNLSALPTE---ALAPLRALQYLRLN 233 (285)
T ss_dssp TTCTTCCEEECCSSCCSCCCHH---HHTTCTTCCEEECC
T ss_pred cCcccccEeeCCCCcCCcCCHH---HcccCcccCEEecc
Confidence 4567888888888888876642 35677888866543
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=2.6e-18 Score=167.99 Aligned_cols=162 Identities=20% Similarity=0.340 Sum_probs=125.4
Q ss_pred CCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEc
Q 015448 13 NKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNV 92 (406)
Q Consensus 13 ~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L 92 (406)
.....+++|+.|++++|.+..++.+..+++|++|++++|.+..++.+..+++|+.|++++|.+..++.+..+++|++|++
T Consensus 149 ~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 228 (347)
T 4fmz_A 149 SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKI 228 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEEC
T ss_pred cchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEc
Confidence 34566788888888888888877777888888888888888887777778888888888888877776777788888888
Q ss_pred CCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCCCCCchhHHHH
Q 015448 93 GKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNPVAEYDKLAKK 162 (406)
Q Consensus 93 s~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i~~~~~~~~~ 162 (406)
++|.++.++.+..+++|++|++++|.++.++.+..+++|++|+++ ..+++|+.|+|++|.+......
T Consensus 229 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~--- 305 (347)
T 4fmz_A 229 GNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDME--- 305 (347)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHH---
T ss_pred cCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChh---
Confidence 888888777777788888888888888877777777888888777 4667888888888888766542
Q ss_pred HHhcCCCcccccCcC
Q 015448 163 VKTLLPNLCIFNARP 177 (406)
Q Consensus 163 ~~~~lp~L~~Ld~~~ 177 (406)
.+..+++|+.|+...
T Consensus 306 ~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQ 320 (347)
T ss_dssp HHHTCTTCSEEECCS
T ss_pred HhhccccCCEEEccC
Confidence 356678887666443
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=1e-17 Score=158.94 Aligned_cols=156 Identities=29% Similarity=0.385 Sum_probs=138.1
Q ss_pred CccccccccCCCC--CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCC
Q 015448 2 TRLSTQQILKDNK--TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKL 75 (406)
Q Consensus 2 ~~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l 75 (406)
++|+.+.|..+.+ +..+++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++. |..+++|++|+|++|.+
T Consensus 42 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 121 (270)
T 2o6q_A 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121 (270)
T ss_dssp EECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCC
T ss_pred EECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCcc
Confidence 3567777877754 566899999999999999987 57889999999999999999873 78999999999999999
Q ss_pred CCCCC--CCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------
Q 015448 76 QSLKG--IEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------ 137 (406)
Q Consensus 76 ~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------ 137 (406)
+.++. +..+++|++|+|++|.|+.++. +..+++|++|+|++|.|+.++. +..+++|++|+|+
T Consensus 122 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence 98883 8899999999999999999874 7889999999999999999875 7889999999998
Q ss_pred CCCCCCCEEEcCCCCCCCch
Q 015448 138 SYFFNLNNLNLQGNPVAEYD 157 (406)
Q Consensus 138 ~~l~~L~~L~Ls~N~i~~~~ 157 (406)
..+++|+.|+|++|++.+.+
T Consensus 202 ~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 202 DSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTCTTCCEEECCSSCBCCSS
T ss_pred ccccCCCEEEecCCCeeCCC
Confidence 46789999999999997654
No 14
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=2.6e-17 Score=154.50 Aligned_cols=153 Identities=25% Similarity=0.364 Sum_probs=122.5
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCC
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL 78 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l 78 (406)
+++.+.+..+. ...+.+|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.++. |..+++|++|+|++|.|+.+
T Consensus 20 ~~~~~~l~~~p-~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 98 (251)
T 3m19_A 20 DCQGKSLDSVP-SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98 (251)
T ss_dssp ECTTCCCSSCC-SCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred ecCCCCccccC-CCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc
Confidence 34445554443 234578999999999999886 68899999999999999998864 88999999999999999988
Q ss_pred C--CCCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCC
Q 015448 79 K--GIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYF 140 (406)
Q Consensus 79 ~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l 140 (406)
+ .+..+++|++|+|++|.|+.++. +..+++|++|+|++|.|+.++. +..+++|++|+|+ ..+
T Consensus 99 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 178 (251)
T 3m19_A 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence 8 47889999999999999999874 6789999999999999998875 6677766666665 345
Q ss_pred CCCCEEEcCCCCCCCc
Q 015448 141 FNLNNLNLQGNPVAEY 156 (406)
Q Consensus 141 ~~L~~L~Ls~N~i~~~ 156 (406)
++|+.|+|++|++.+.
T Consensus 179 ~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 179 GKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCCEEECCSCCBCTT
T ss_pred CCCCEEEeeCCceeCC
Confidence 5666666666666554
No 15
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.2e-17 Score=155.23 Aligned_cols=169 Identities=21% Similarity=0.238 Sum_probs=132.0
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCC
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL 78 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l 78 (406)
+++.+.+..+. ...+++|+.|+|++|.|+.+. .|..+++|++|+|++|.|+.++. |..+++|++|+|++|.|+.+
T Consensus 25 ~c~~~~l~~ip-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 25 DCRSKRHASVP-AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp ECTTSCCSSCC-SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EccCCCcCccC-CCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence 34444444443 344688999999999999884 68889999999999999988864 78899999999999999988
Q ss_pred CC--CCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCC
Q 015448 79 KG--IEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAE 155 (406)
Q Consensus 79 ~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~ 155 (406)
+. +..+++|++|+|++|.|+.+| .+..+++|++|+|++|.|+.++. ..+ ..+++|+.|+|++|++.+
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~---------~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAF---------DRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTT---------TTCTTCCEEECTTSCBCT
T ss_pred ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH-HHH---------hCCCCCCEEEeeCCCccC
Confidence 83 788999999999999999887 57888999999999999988764 112 245689999999999986
Q ss_pred chh----HHHHHHhcCCCcccccCcCCChhh
Q 015448 156 YDK----LAKKVKTLLPNLCIFNARPIDRIT 182 (406)
Q Consensus 156 ~~~----~~~~~~~~lp~L~~Ld~~~~~~~~ 182 (406)
.+. ++.++....+.+..+++.++....
T Consensus 174 ~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~ 204 (229)
T 3e6j_A 174 ECRDIMYLRNWVADHTSIAMRWDGKAVNDPD 204 (229)
T ss_dssp TBGGGHHHHHHHHHCGGGEEEESSSEEECTT
T ss_pred CcchhHHHHHHHHhCccccccccCcccCCCC
Confidence 543 555666666777777776654433
No 16
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1.1e-17 Score=161.02 Aligned_cols=173 Identities=26% Similarity=0.219 Sum_probs=140.2
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC-
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK- 79 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~- 79 (406)
+++.+.+..+.. ..+++++.|+|++|.|+.++ .|..+++|++|+|++|.|+.++....+++|++|+|++|.|+.+|
T Consensus 16 ~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 94 (290)
T 1p9a_G 16 NCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL 94 (290)
T ss_dssp ECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCC
T ss_pred ECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCch
Confidence 445555555432 34678999999999998875 78889999999999999998887788999999999999999988
Q ss_pred CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCCCCC
Q 015448 80 GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYFFNL 143 (406)
Q Consensus 80 ~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l~~L 143 (406)
.+..+++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.++. +..+++|+.|+|+ ..+++|
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174 (290)
T ss_dssp CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence 5888999999999999999886 37889999999999999998875 6788999999988 457899
Q ss_pred CEEEcCCCCCCCchhHHHHHHhcCCCccccc--CcCCCh
Q 015448 144 NNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN--ARPIDR 180 (406)
Q Consensus 144 ~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld--~~~~~~ 180 (406)
+.|+|++|.|..++.. +..+++|+.|+ ++++.+
T Consensus 175 ~~L~L~~N~l~~ip~~----~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 175 DTLLLQENSLYTIPKG----FFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CEEECCSSCCCCCCTT----TTTTCCCSEEECCSCCBCC
T ss_pred CEEECCCCcCCccChh----hcccccCCeEEeCCCCccC
Confidence 9999999999988753 33456677554 555543
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=9e-18 Score=170.86 Aligned_cols=169 Identities=22% Similarity=0.290 Sum_probs=97.6
Q ss_pred ccccccccCCC--CCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCC
Q 015448 3 RLSTQQILKDN--KTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQ 76 (406)
Q Consensus 3 ~Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~ 76 (406)
+|+.|.|..+. .+..+++|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.++. |..+++|++|+|++|.|+
T Consensus 81 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 81 NLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred ECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence 44555555442 2344566666666666666553 55666666666666666666542 555666666666666665
Q ss_pred CCC--C-------------------------CCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccc--cCC
Q 015448 77 SLK--G-------------------------IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICK--LDQ 127 (406)
Q Consensus 77 ~l~--~-------------------------l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~--l~~ 127 (406)
.++ . +..+++|++|+|++|.|+.++.+..+++|+.|+|++|.|+.+.. +..
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 240 (452)
T 3zyi_A 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHG 240 (452)
T ss_dssp EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTT
T ss_pred eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccC
Confidence 444 1 33444555555555555555555555556666666665555432 555
Q ss_pred CCCCcEeeCC------------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccccc
Q 015448 128 MKELNTLGMD------------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN 174 (406)
Q Consensus 128 L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld 174 (406)
+++|+.|+|+ ..+++|+.|+|++|.|+.++.. .+..+++|+.|+
T Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~ 296 (452)
T 3zyi_A 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD---LFTPLRYLVELH 296 (452)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT---SSTTCTTCCEEE
T ss_pred ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH---HhccccCCCEEE
Confidence 5666666655 3456777777777777666532 244566666554
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.75 E-value=1.3e-17 Score=162.98 Aligned_cols=135 Identities=19% Similarity=0.375 Sum_probs=92.5
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE 82 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~ 82 (406)
.++.+.+..+.....+++|++|++++|.++.++.+..+++|++|+|++|.++.++.+..+++|++|+|++|.+..++.+.
T Consensus 50 ~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 129 (347)
T 4fmz_A 50 VVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLA 129 (347)
T ss_dssp ECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGGGT
T ss_pred EEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchhhc
Confidence 34555666655556677788888888888777767777888888888888777777777778888888888777776666
Q ss_pred CCCCCcEEEcCCCC-CCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC
Q 015448 83 GLSKPTVLNVGKNK-LRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137 (406)
Q Consensus 83 ~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls 137 (406)
.+++|++|++++|. +..++.+..+++|++|++++|.+..++.+..+++|++|+++
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLN 185 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECT
T ss_pred cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEcc
Confidence 67777777777763 34444555666666666666666555555555555555555
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=168.75 Aligned_cols=169 Identities=25% Similarity=0.303 Sum_probs=103.1
Q ss_pred ccccccccCCC--CCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCC
Q 015448 3 RLSTQQILKDN--KTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQ 76 (406)
Q Consensus 3 ~Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~ 76 (406)
+|+.|.|..+. .+..+++|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.++. |..+++|++|+|++|.|.
T Consensus 70 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 70 NLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp ECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred EccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence 45555555543 2344666666676666666654 56666666666666666666643 566666666666666655
Q ss_pred CCC---------------------------CCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCcc--ccCC
Q 015448 77 SLK---------------------------GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSIC--KLDQ 127 (406)
Q Consensus 77 ~l~---------------------------~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~--~l~~ 127 (406)
.++ .|..+++|++|+|++|.|+.+|.+..+++|+.|+|++|.|+.+. .+..
T Consensus 150 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 229 (440)
T 3zyj_A 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQG 229 (440)
T ss_dssp EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTT
T ss_pred ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhcc
Confidence 444 14445556666666666666665666666666666666666553 2556
Q ss_pred CCCCcEeeCC------------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccccc
Q 015448 128 MKELNTLGMD------------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN 174 (406)
Q Consensus 128 L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld 174 (406)
+++|+.|+|+ ..+++|+.|+|++|.|+.++.. .+..+++|+.|+
T Consensus 230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~ 285 (440)
T 3zyj_A 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD---LFTPLHHLERIH 285 (440)
T ss_dssp CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT---TTSSCTTCCEEE
T ss_pred CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh---HhccccCCCEEE
Confidence 6666666665 3567777777777777766542 245567777554
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=6e-18 Score=165.62 Aligned_cols=173 Identities=17% Similarity=0.230 Sum_probs=135.5
Q ss_pred ccccccccCCCC-CCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCC-CCCCCCCCcEEEecCCCCC-CC
Q 015448 3 RLSTQQILKDNK-TCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQNKLQ-SL 78 (406)
Q Consensus 3 ~Ls~n~i~~~~~-~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N~l~-~l 78 (406)
+|+.+.+..+.. ...+++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.+| .+..+++|++|+|++|++. .+
T Consensus 87 ~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~ 166 (328)
T 4fcg_A 87 ELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166 (328)
T ss_dssp EEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCC
T ss_pred EccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCcccc
Confidence 456666665543 455788999999999998887 6788899999999999998886 4888899999999986544 56
Q ss_pred C-CCC---------CCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCccc-cCCCCCCcEeeCC---------
Q 015448 79 K-GIE---------GLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMD--------- 137 (406)
Q Consensus 79 ~-~l~---------~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls--------- 137 (406)
| .+. .+++|++|+|++|.|+.+| .+..+++|++|+|++|.++.++. +..+++|++|+|+
T Consensus 167 p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP 246 (328)
T ss_dssp CSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred ChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH
Confidence 6 343 3889999999999998887 47888999999999999988874 7888899999888
Q ss_pred ---CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCC
Q 015448 138 ---SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPI 178 (406)
Q Consensus 138 ---~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~ 178 (406)
..+++|+.|+|++|.+....+. .+..+++|+.|+...+
T Consensus 247 ~~~~~l~~L~~L~L~~n~~~~~~p~---~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 247 PIFGGRAPLKRLILKDCSNLLTLPL---DIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CCTTCCCCCCEEECTTCTTCCBCCT---TGGGCTTCCEEECTTC
T ss_pred HHhcCCCCCCEEECCCCCchhhcch---hhhcCCCCCEEeCCCC
Confidence 5678899999998876554322 2567888888876553
No 21
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=5.2e-18 Score=153.64 Aligned_cols=143 Identities=20% Similarity=0.332 Sum_probs=122.5
Q ss_pred CCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCC--CCCCCCCCCCcEEEcCC
Q 015448 17 DPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS--LKGIEGLSKPTVLNVGK 94 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~ 94 (406)
.+++|+.|++++|.|+.++.+..+++|++|+|++|.++.++.+..+++|++|+|++|.++. .+.+..+++|++|+|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 3678999999999999998889999999999999999998889999999999999999996 33799999999999999
Q ss_pred CCCCC--CcCCCCCCCCCEEEccCCc-cCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcc
Q 015448 95 NKLRS--MDDVTSVVSLRALILNDNE-IVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC 171 (406)
Q Consensus 95 N~i~~--l~~l~~l~~L~~L~Ls~N~-i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~ 171 (406)
|.|+. ++.+..+++|++|+|++|. ++.++.+.. +++|+.|+|++|.+..++. +..+++|+
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~------------l~~L~~L~l~~n~i~~~~~-----l~~l~~L~ 184 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT------------LPELKSLNIQFDGVHDYRG-----IEDFPKLN 184 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGG------------CSSCCEEECTTBCCCCCTT-----GGGCSSCC
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcC------------CCCCCEEECCCCCCcChHH-----hccCCCCC
Confidence 99987 3468899999999999998 888875544 4577888888888887763 56688888
Q ss_pred cccCc
Q 015448 172 IFNAR 176 (406)
Q Consensus 172 ~Ld~~ 176 (406)
.|+..
T Consensus 185 ~L~l~ 189 (197)
T 4ezg_A 185 QLYAF 189 (197)
T ss_dssp EEEEC
T ss_pred EEEee
Confidence 76643
No 22
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=2.8e-17 Score=158.17 Aligned_cols=157 Identities=25% Similarity=0.260 Sum_probs=136.2
Q ss_pred CccccccccCCC--CCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCC
Q 015448 2 TRLSTQQILKDN--KTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSL 78 (406)
Q Consensus 2 ~~Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l 78 (406)
++|+.|.|..+. .+..+++|+.|+|++|.|+.++....+++|++|+|++|.|+.++. +..+++|++|+|++|.|+.+
T Consensus 36 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l 115 (290)
T 1p9a_G 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115 (290)
T ss_dssp EECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCC
T ss_pred EEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCccc
Confidence 356777776653 356789999999999999998877889999999999999999875 78899999999999999988
Q ss_pred C--CCCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC-----------CCCC
Q 015448 79 K--GIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD-----------SYFF 141 (406)
Q Consensus 79 ~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls-----------~~l~ 141 (406)
+ .|..+++|++|+|++|.|+.++. +..+++|+.|+|++|.|+.++. +..+++|++|+|+ ..++
T Consensus 116 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~ 195 (290)
T 1p9a_G 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH 195 (290)
T ss_dssp CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccc
Confidence 7 48999999999999999999874 6789999999999999999885 6789999999998 3456
Q ss_pred CCCEEEcCCCCCCCchh
Q 015448 142 NLNNLNLQGNPVAEYDK 158 (406)
Q Consensus 142 ~L~~L~Ls~N~i~~~~~ 158 (406)
+|+.|+|++|++.+.+.
T Consensus 196 ~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 196 LLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCSEEECCSCCBCCSGG
T ss_pred cCCeEEeCCCCccCcCc
Confidence 79999999999987654
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=1.5e-17 Score=169.87 Aligned_cols=168 Identities=26% Similarity=0.394 Sum_probs=97.7
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE 82 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~ 82 (406)
+|+.+.+........+++|++|++++|.++.++.+..+++|++|+|++|.++.++.+..+++|++|+|++|.+..++.+.
T Consensus 183 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 262 (466)
T 1o6v_A 183 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 262 (466)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGT
T ss_pred ECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhh
Confidence 34445554444445566666666666666666555556666666666666666555556666666666666666555555
Q ss_pred CCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCC
Q 015448 83 GLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNP 152 (406)
Q Consensus 83 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~ 152 (406)
.+++|+.|++++|.++.++.+..+++|+.|+|++|.++.++.+..+++|+.|+|+ ..+++|+.|++++|.
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK 342 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC
T ss_pred cCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCc
Confidence 5666666666666666555555556666666666666555555555566666555 345555555555555
Q ss_pred CCCchhHHHHHHhcCCCcccccC
Q 015448 153 VAEYDKLAKKVKTLLPNLCIFNA 175 (406)
Q Consensus 153 i~~~~~~~~~~~~~lp~L~~Ld~ 175 (406)
+..++. +..+++|+.|+.
T Consensus 343 l~~~~~-----l~~l~~L~~L~l 360 (466)
T 1o6v_A 343 VSDVSS-----LANLTNINWLSA 360 (466)
T ss_dssp CCCCGG-----GTTCTTCCEEEC
T ss_pred cCCchh-----hccCCCCCEEeC
Confidence 555532 334555554443
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=167.91 Aligned_cols=157 Identities=23% Similarity=0.316 Sum_probs=118.9
Q ss_pred CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCc
Q 015448 15 TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPT 88 (406)
Q Consensus 15 ~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~ 88 (406)
...+.+++.|+|++|.|+.++ .|..+++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++ .+..+++|+
T Consensus 60 ~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 60 DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp SCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 344688999999999999885 7899999999999999999886 4899999999999999999998 389999999
Q ss_pred EEEcCCCCCCCCc--CCCCCCCCCEEEccC-CccCCccc--cCCCCCCcEeeCC----------CCCCCCCEEEcCCCCC
Q 015448 89 VLNVGKNKLRSMD--DVTSVVSLRALILND-NEIVSICK--LDQMKELNTLGMD----------SYFFNLNNLNLQGNPV 153 (406)
Q Consensus 89 ~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~-N~i~~l~~--l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i 153 (406)
+|+|++|.|..++ .+..+++|++|+|++ |.+..++. +..+++|++|+|+ ..+++|+.|+|++|.|
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence 9999999998865 366667777777766 34444442 5566666666665 3455666666666666
Q ss_pred CCchhHHHHHHhcCCCccccc
Q 015448 154 AEYDKLAKKVKTLLPNLCIFN 174 (406)
Q Consensus 154 ~~~~~~~~~~~~~lp~L~~Ld 174 (406)
..+.+. .+..+++|+.|+
T Consensus 220 ~~~~~~---~~~~l~~L~~L~ 237 (440)
T 3zyj_A 220 SAIRPG---SFQGLMHLQKLW 237 (440)
T ss_dssp CEECTT---TTTTCTTCCEEE
T ss_pred CccChh---hhccCccCCEEE
Confidence 655332 234455555444
No 25
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=6.3e-17 Score=154.23 Aligned_cols=170 Identities=22% Similarity=0.249 Sum_probs=143.7
Q ss_pred cccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCC-CCCC
Q 015448 4 LSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNK-LQSL 78 (406)
Q Consensus 4 Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~-l~~l 78 (406)
++.+.+..+ +...+++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.+. .|..+++|++|+|++|. +..+
T Consensus 18 c~~~~l~~i-p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 18 CPQQGLQAV-PVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp CCSSCCSSC-CTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred cCcCCcccC-CcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc
Confidence 334444444 3345789999999999999986 6899999999999999999874 48999999999999997 8888
Q ss_pred C--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCC
Q 015448 79 K--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYF 140 (406)
Q Consensus 79 ~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l 140 (406)
+ .+..+++|++|+|++|.++.++ .+..+++|++|+|++|.++.++. +..+++|++|+|+ ..+
T Consensus 97 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 176 (285)
T 1ozn_A 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176 (285)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCc
Confidence 5 5899999999999999999975 37889999999999999998875 7889999999998 467
Q ss_pred CCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcC
Q 015448 141 FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARP 177 (406)
Q Consensus 141 ~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~ 177 (406)
++|+.|+|++|.+..+.+. .+..+++|+.|+...
T Consensus 177 ~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 177 HSLDRLLLHQNRVAHVHPH---AFRDLGRLMTLYLFA 210 (285)
T ss_dssp TTCCEEECCSSCCCEECTT---TTTTCTTCCEEECCS
T ss_pred cccCEEECCCCcccccCHh---HccCcccccEeeCCC
Confidence 8999999999999887432 256788999877543
No 26
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.73 E-value=5.1e-18 Score=150.92 Aligned_cols=161 Identities=20% Similarity=0.320 Sum_probs=104.5
Q ss_pred CCccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCC-CCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC
Q 015448 1 MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFN-NLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79 (406)
Q Consensus 1 m~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~-~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~ 79 (406)
|++|+.+.|........+.+|+.|++++|.|+.++.+..+. +|++|+|++|.|+.++.+..+++|++|+|++|.|+.+|
T Consensus 1 m~~lt~~~i~~~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp -CCCCHHHHHTSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC
T ss_pred CccccHHHHHHHHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC
Confidence 78888888877766666777777777777777666444433 66666666666665544555555555555555555444
Q ss_pred -CCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchh
Q 015448 80 -GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDK 158 (406)
Q Consensus 80 -~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~ 158 (406)
.+ +..+++|++|+|++|.|+.++.+..+. .+++|+.|+|++|+++.++.
T Consensus 81 ~~~---------------------~~~l~~L~~L~L~~N~i~~~~~~~~l~---------~l~~L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 81 EGL---------------------DQALPDLTELILTNNSLVELGDLDPLA---------SLKSLTYLCILRNPVTNKKH 130 (176)
T ss_dssp SCH---------------------HHHCTTCCEEECCSCCCCCGGGGGGGG---------GCTTCCEEECCSSGGGGSTT
T ss_pred cch---------------------hhcCCCCCEEECCCCcCCcchhhHhhh---------cCCCCCEEEecCCCCCCcHh
Confidence 21 244555556666666555554422221 45577888888888887777
Q ss_pred HHHHHHhcCCCcccccCcCCChhhhhhhhhhhc
Q 015448 159 LAKKVKTLLPNLCIFNARPIDRITKNEKDNIVD 191 (406)
Q Consensus 159 ~~~~~~~~lp~L~~Ld~~~~~~~~~~~~~~~l~ 191 (406)
++..++..+|+|+.|+...+...++..+..++.
T Consensus 131 ~~~~~~~~l~~L~~Ld~~~n~~~~~~~~~~~~~ 163 (176)
T 1a9n_A 131 YRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFK 163 (176)
T ss_dssp HHHHHHHHCTTCSEETTEECCHHHHHHHHHTTC
T ss_pred HHHHHHHHCCccceeCCCcCCHHHHHHHHHHHh
Confidence 766677888999999888888777776665554
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.73 E-value=2.6e-17 Score=168.05 Aligned_cols=158 Identities=25% Similarity=0.354 Sum_probs=104.2
Q ss_pred CCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcC
Q 015448 14 KTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVG 93 (406)
Q Consensus 14 ~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls 93 (406)
+...+++|+.|++++|.++.++.+..+++|++|++++|.++.++++..+++|++|+|++|.++.++.+..+++|+.|+++
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 172 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred hhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECC
Confidence 34556667777777777666666666667777777777666665566666677777777766666666666677777777
Q ss_pred CCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCCCCCchhHHHHH
Q 015448 94 KNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNPVAEYDKLAKKV 163 (406)
Q Consensus 94 ~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i~~~~~~~~~~ 163 (406)
+|.+..++.+..+++|+.|++++|.++.++.+..+++|+.|+|+ ..+++|+.|+|++|.+....+
T Consensus 252 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~----- 326 (466)
T 1o6v_A 252 NNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP----- 326 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-----
T ss_pred CCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-----
Confidence 77766665566666777777777776666666666667776666 445666777777776666654
Q ss_pred HhcCCCcccccCc
Q 015448 164 KTLLPNLCIFNAR 176 (406)
Q Consensus 164 ~~~lp~L~~Ld~~ 176 (406)
+..+++|+.|+..
T Consensus 327 ~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 327 VSSLTKLQRLFFY 339 (466)
T ss_dssp GGGCTTCCEEECC
T ss_pred hccCccCCEeECC
Confidence 3456666655543
No 28
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.4e-18 Score=163.36 Aligned_cols=157 Identities=23% Similarity=0.394 Sum_probs=140.7
Q ss_pred CCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcC
Q 015448 14 KTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVG 93 (406)
Q Consensus 14 ~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls 93 (406)
+...+..+..++++++.+++++.+..+++|++|++++|.|+.++.+..+++|++|+|++|.|+.++.+..+++|++|+|+
T Consensus 14 pd~~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 14 PDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN 93 (263)
T ss_dssp CSHHHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred CCHHHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECC
Confidence 33446677888999999999888889999999999999999999999999999999999999999889999999999999
Q ss_pred CCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCCCCCchhHHHHH
Q 015448 94 KNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNPVAEYDKLAKKV 163 (406)
Q Consensus 94 ~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i~~~~~~~~~~ 163 (406)
+|.|+.++.+.. ++|++|+|++|.|+.++.+..+++|+.|+|+ ..+++|+.|+|++|.|..+..
T Consensus 94 ~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~----- 167 (263)
T 1xeu_A 94 RNRLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGG----- 167 (263)
T ss_dssp SSCCSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTT-----
T ss_pred CCccCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHH-----
Confidence 999999987766 9999999999999999989999999999998 578899999999999988843
Q ss_pred HhcCCCcccccCc
Q 015448 164 KTLLPNLCIFNAR 176 (406)
Q Consensus 164 ~~~lp~L~~Ld~~ 176 (406)
+..+++|+.|+..
T Consensus 168 l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 168 LTRLKKVNWIDLT 180 (263)
T ss_dssp STTCCCCCEEEEE
T ss_pred hccCCCCCEEeCC
Confidence 5678888877643
No 29
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=4.6e-17 Score=154.44 Aligned_cols=119 Identities=27% Similarity=0.370 Sum_probs=55.0
Q ss_pred CCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEc
Q 015448 19 NSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNV 92 (406)
Q Consensus 19 ~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L 92 (406)
++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++. |..+++|++|+|++|.++.++ .+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 34555555555554443 34444555555555555444432 444455555555555544433 2444444555555
Q ss_pred CCCCCCCCc--CCCCCCCCCEEEccCCccCCc--c-ccCCCCCCcEeeCC
Q 015448 93 GKNKLRSMD--DVTSVVSLRALILNDNEIVSI--C-KLDQMKELNTLGMD 137 (406)
Q Consensus 93 s~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l--~-~l~~L~~L~~L~Ls 137 (406)
++|.+..++ .+..+++|++|+|++|.++.+ + .+..+++|++|+|+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence 444444433 244444444444444444432 2 14444444444444
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=1.2e-16 Score=162.55 Aligned_cols=157 Identities=23% Similarity=0.291 Sum_probs=120.4
Q ss_pred CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcE
Q 015448 16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTV 89 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~ 89 (406)
..+++|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++ .+..+++|++
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 44678999999999999874 7899999999999999999885 4899999999999999999988 3889999999
Q ss_pred EEcCCCCCCCCc--CCCCCCCCCEEEccC-CccCCccc--cCCCCCCcEeeCC----------CCCCCCCEEEcCCCCCC
Q 015448 90 LNVGKNKLRSMD--DVTSVVSLRALILND-NEIVSICK--LDQMKELNTLGMD----------SYFFNLNNLNLQGNPVA 154 (406)
Q Consensus 90 L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~-N~i~~l~~--l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i~ 154 (406)
|+|++|.|+.++ .+..+++|+.|+|++ |.+..++. +..+++|++|+|+ ..+++|+.|+|++|.+.
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCS
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCc
Confidence 999999998876 366677777777776 44554442 5666666776666 34556666677766666
Q ss_pred CchhHHHHHHhcCCCcccccC
Q 015448 155 EYDKLAKKVKTLLPNLCIFNA 175 (406)
Q Consensus 155 ~~~~~~~~~~~~lp~L~~Ld~ 175 (406)
.+.+. .+..+++|+.|+.
T Consensus 232 ~~~~~---~~~~l~~L~~L~L 249 (452)
T 3zyi_A 232 EIRPG---SFHGLSSLKKLWV 249 (452)
T ss_dssp EECGG---GGTTCTTCCEEEC
T ss_pred ccCcc---cccCccCCCEEEe
Confidence 65432 2445566665543
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.70 E-value=5.3e-17 Score=158.87 Aligned_cols=170 Identities=19% Similarity=0.258 Sum_probs=141.3
Q ss_pred ccccccccCCC-CCCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCC-CCCCC-CC---------CCCCCcEEE
Q 015448 3 RLSTQQILKDN-KTCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNL-TSLEG-LK---------HCVNLKWLS 69 (406)
Q Consensus 3 ~Ls~n~i~~~~-~~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l-~~l~~-l~---------~L~~L~~L~ 69 (406)
+|+.|.+..+. .+..+++|++|+|++|.|+.++ .+..+++|++|+|++|.+ ..+|. +. .+++|++|+
T Consensus 110 ~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~ 189 (328)
T 4fcg_A 110 TIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189 (328)
T ss_dssp EEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEE
T ss_pred ECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEE
Confidence 56677777554 2566899999999999999888 788999999999999764 44553 33 499999999
Q ss_pred ecCCCCCCCC-CCCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCc-c-ccCCCCCCcEeeCC--------
Q 015448 70 LVQNKLQSLK-GIEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSI-C-KLDQMKELNTLGMD-------- 137 (406)
Q Consensus 70 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l-~-~l~~L~~L~~L~Ls-------- 137 (406)
|++|.|+.+| .+..+++|++|+|++|.++.++ .+..+++|++|+|++|.+... + .+..+++|++|+|+
T Consensus 190 L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 190 LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp EEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBC
T ss_pred CcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhc
Confidence 9999999998 6899999999999999999987 588999999999999887654 4 38889999999998
Q ss_pred ----CCCCCCCEEEcCCCCCCCc-hhHHHHHHhcCCCcccccCc
Q 015448 138 ----SYFFNLNNLNLQGNPVAEY-DKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 138 ----~~l~~L~~L~Ls~N~i~~~-~~~~~~~~~~lp~L~~Ld~~ 176 (406)
..+++|+.|+|++|++... |. .+..+++|+.++..
T Consensus 270 p~~~~~l~~L~~L~L~~n~~~~~iP~----~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 270 PLDIHRLTQLEKLDLRGCVNLSRLPS----LIAQLPANCIILVP 309 (328)
T ss_dssp CTTGGGCTTCCEEECTTCTTCCCCCG----GGGGSCTTCEEECC
T ss_pred chhhhcCCCCCEEeCCCCCchhhccH----HHhhccCceEEeCC
Confidence 5789999999999887554 43 36778888877544
No 32
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=3.8e-17 Score=151.91 Aligned_cols=157 Identities=20% Similarity=0.246 Sum_probs=132.8
Q ss_pred CCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCC-CCCCC--CCCCCCCCcEEEecC-CCCCCCC--CCCCCCCCc
Q 015448 17 DPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNN-LTSLE--GLKHCVNLKWLSLVQ-NKLQSLK--GIEGLSKPT 88 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~-l~~l~--~l~~L~~L~~L~Ls~-N~l~~l~--~l~~l~~L~ 88 (406)
.+.+|+.|+|++|.|+.++ .|..+++|++|+|++|. ++.++ .|..+++|++|+|++ |.|+.++ .+..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 5668999999999999886 68899999999999997 88886 478899999999998 9999887 478899999
Q ss_pred EEEcCCCCCCCCcCCCCCCCCC---EEEccCC-ccCCccc--cCCCCCCc-EeeCC-----------CCCCCCCEEEcCC
Q 015448 89 VLNVGKNKLRSMDDVTSVVSLR---ALILNDN-EIVSICK--LDQMKELN-TLGMD-----------SYFFNLNNLNLQG 150 (406)
Q Consensus 89 ~L~Ls~N~i~~l~~l~~l~~L~---~L~Ls~N-~i~~l~~--l~~L~~L~-~L~Ls-----------~~l~~L~~L~Ls~ 150 (406)
+|+|++|.++.+|.+..+++|+ +|++++| .++.++. +..+++|+ +|+++ -..++|+.|+|++
T Consensus 109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred EEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence 9999999999998888888888 9999999 9988875 88899999 99987 1236799999999
Q ss_pred CC-CCCchhHHHHHHhcC-CCcccccCc
Q 015448 151 NP-VAEYDKLAKKVKTLL-PNLCIFNAR 176 (406)
Q Consensus 151 N~-i~~~~~~~~~~~~~l-p~L~~Ld~~ 176 (406)
|+ +..++.. .+..+ ++|+.|+..
T Consensus 189 n~~l~~i~~~---~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 189 NKYLTVIDKD---AFGGVYSGPSLLDVS 213 (239)
T ss_dssp CTTCCEECTT---TTTTCSBCCSEEECT
T ss_pred CCCcccCCHH---HhhccccCCcEEECC
Confidence 95 8887643 25667 888877654
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.70 E-value=3.4e-16 Score=155.76 Aligned_cols=96 Identities=22% Similarity=0.292 Sum_probs=54.7
Q ss_pred cccccccCCC--CCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCC
Q 015448 4 LSTQQILKDN--KTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQS 77 (406)
Q Consensus 4 Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~ 77 (406)
|+.+.|..+. .+..+++|++|+|++|.++.++ .+..+++|++|+|++|.|+.++. |..+++|++|+|++|.+..
T Consensus 76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence 4444444442 2344556666666666666553 45566666666666666666553 4556666666666666665
Q ss_pred CC--CCCCCCCCcEEEcCCCCCCC
Q 015448 78 LK--GIEGLSKPTVLNVGKNKLRS 99 (406)
Q Consensus 78 l~--~l~~l~~L~~L~Ls~N~i~~ 99 (406)
++ .+..+++|++|+|++|.++.
T Consensus 156 ~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 156 IEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCSB
T ss_pred cChhhccCCCCCCEEECCCCcCCc
Confidence 54 25556666666666665554
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=4.1e-16 Score=159.59 Aligned_cols=163 Identities=28% Similarity=0.325 Sum_probs=91.0
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE 82 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~ 82 (406)
+|+.+.+..+..+..+++|++|+|++|.|+.++ +..+++|++|+|++|.|+.++ +..+++|++|+|++|.++.++ +.
T Consensus 48 ~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~-~~ 124 (457)
T 3bz5_A 48 DCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD-VS 124 (457)
T ss_dssp ECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC-CT
T ss_pred EccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec-CC
Confidence 344455554444444566666666666666654 555566666666666665553 555566666666666555554 55
Q ss_pred CCCCCcEEEcCCCCCCCCc---------------------CCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----
Q 015448 83 GLSKPTVLNVGKNKLRSMD---------------------DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD---- 137 (406)
Q Consensus 83 ~l~~L~~L~Ls~N~i~~l~---------------------~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls---- 137 (406)
.+++|++|++++|.|+.++ .+..+++|++|++++|.++.++ +..+++|+.|+++
T Consensus 125 ~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 125 QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp TCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCC
T ss_pred CCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcC
Confidence 5555555555555555442 2334445555555555555554 5555556666555
Q ss_pred -----CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccC
Q 015448 138 -----SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA 175 (406)
Q Consensus 138 -----~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~ 175 (406)
..+++|+.|+|++|.++.++ +..+++|+.|+.
T Consensus 204 ~~~~l~~l~~L~~L~Ls~N~l~~ip------~~~l~~L~~L~l 240 (457)
T 3bz5_A 204 TKLDLNQNIQLTFLDCSSNKLTEID------VTPLTQLTYFDC 240 (457)
T ss_dssp SCCCCTTCTTCSEEECCSSCCSCCC------CTTCTTCSEEEC
T ss_pred CeeccccCCCCCEEECcCCcccccC------ccccCCCCEEEe
Confidence 34566666666666666654 344566665543
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=5.5e-16 Score=158.67 Aligned_cols=160 Identities=22% Similarity=0.323 Sum_probs=119.3
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC---
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK--- 79 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~--- 79 (406)
+|+.|++..+ +.+.+++|++|++++|.|+.++ +..+++|++|+|++|.++.++ +..+++|++|++++|.|+.++
T Consensus 70 ~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~l~~ 146 (457)
T 3bz5_A 70 ICTSNNITTL-DLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEIDVSH 146 (457)
T ss_dssp ECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCCCTT
T ss_pred EccCCcCCeE-ccccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceecccc
Confidence 4555666555 3556677777777777777664 566667777777777666654 566666666666666655432
Q ss_pred ------------------CCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----
Q 015448 80 ------------------GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD---- 137 (406)
Q Consensus 80 ------------------~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls---- 137 (406)
.+..+++|++|++++|.|+.++ +..+++|+.|++++|.++.+ .+..+++|++|+++
T Consensus 147 l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 147 NTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp CTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCC
T ss_pred CCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcc
Confidence 3556778889999999999887 88899999999999999998 48889999999998
Q ss_pred -----CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccc
Q 015448 138 -----SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF 173 (406)
Q Consensus 138 -----~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~L 173 (406)
..+++|+.|+|++|.++.++. ..+++|+.|
T Consensus 225 ~~ip~~~l~~L~~L~l~~N~l~~~~~------~~l~~L~~L 259 (457)
T 3bz5_A 225 TEIDVTPLTQLTYFDCSVNPLTELDV------STLSKLTTL 259 (457)
T ss_dssp SCCCCTTCTTCSEEECCSSCCSCCCC------TTCTTCCEE
T ss_pred cccCccccCCCCEEEeeCCcCCCcCH------HHCCCCCEE
Confidence 578899999999999998762 345655544
No 36
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=5.8e-16 Score=145.21 Aligned_cols=157 Identities=25% Similarity=0.379 Sum_probs=135.5
Q ss_pred CCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcC
Q 015448 19 NSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVG 93 (406)
Q Consensus 19 ~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls 93 (406)
...++++++++.++.+| .+. ++|+.|+|++|.|+.++. |..+++|++|+|++|.|+.++ .+..+++|++|+|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 46788999999999998 343 689999999999998863 899999999999999999887 38999999999999
Q ss_pred CCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCCCCCCEEEcCCCCCCCch
Q 015448 94 KNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYFFNLNNLNLQGNPVAEYD 157 (406)
Q Consensus 94 ~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i~~~~ 157 (406)
+|.|+.++ .+..+++|++|+|++|.|+.++. +..+++|++|+|+ ..+++|+.|+|++|.+..++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 99999986 47889999999999999999886 7889999999998 46789999999999999887
Q ss_pred hHHHHHHhcCCCcccccC--cCCCh
Q 015448 158 KLAKKVKTLLPNLCIFNA--RPIDR 180 (406)
Q Consensus 158 ~~~~~~~~~lp~L~~Ld~--~~~~~ 180 (406)
.. .+..+++|+.|+. +++..
T Consensus 172 ~~---~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 172 HG---AFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TT---TTTTCTTCCEEECCSCCBCT
T ss_pred HH---HHhCCCCCCEEEeeCCceeC
Confidence 53 2567888887664 45443
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=2.9e-16 Score=165.52 Aligned_cols=97 Identities=22% Similarity=0.290 Sum_probs=64.1
Q ss_pred ccccccccCCC--CCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCC
Q 015448 3 RLSTQQILKDN--KTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQ 76 (406)
Q Consensus 3 ~Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~ 76 (406)
+|+.+.|..+. .+..+++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++. |..+++|++|+|++|.|+
T Consensus 81 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 160 (597)
T 3oja_B 81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160 (597)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC
Confidence 44555555553 3445667777777777777665 45677777777777777776654 566777777777777777
Q ss_pred CCC--CCCCCCCCcEEEcCCCCCCC
Q 015448 77 SLK--GIEGLSKPTVLNVGKNKLRS 99 (406)
Q Consensus 77 ~l~--~l~~l~~L~~L~Ls~N~i~~ 99 (406)
.++ .+..+++|++|+|++|.|+.
T Consensus 161 ~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 161 RIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp BCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCChhhhhcCCcCcEEECcCCCCCC
Confidence 655 36666777777777766654
No 38
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=7.4e-17 Score=145.99 Aligned_cols=141 Identities=17% Similarity=0.269 Sum_probs=121.5
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCC--CCCCCCCCCCcEEEecCCCCCC-CC
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTS--LEGLKHCVNLKWLSLVQNKLQS-LK 79 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~--l~~l~~L~~L~~L~Ls~N~l~~-l~ 79 (406)
+|+.+.|..+.....+++|++|++++|.++.++.+..+++|++|+|++|.++. .+.+..+++|++|+|++|.++. .+
T Consensus 50 ~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 129 (197)
T 4ezg_A 50 TLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129 (197)
T ss_dssp EEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH
T ss_pred eccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH
Confidence 46677777777777789999999999999999899999999999999999997 4569999999999999999996 33
Q ss_pred -CCCCCCCCcEEEcCCCC-CCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCC
Q 015448 80 -GIEGLSKPTVLNVGKNK-LRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAE 155 (406)
Q Consensus 80 -~l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~ 155 (406)
.+..+++|++|+|++|. ++.++.+..+++|++|++++|.|+.++.+. .+++|+.|++++|+|..
T Consensus 130 ~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~------------~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 130 TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIE------------DFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp HHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGG------------GCSSCCEEEECBC----
T ss_pred HHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhc------------cCCCCCEEEeeCcccCC
Confidence 68899999999999998 999998999999999999999999877544 44688899999998854
No 39
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=2e-16 Score=143.94 Aligned_cols=139 Identities=27% Similarity=0.373 Sum_probs=116.0
Q ss_pred ccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCCC
Q 015448 5 STQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKG 80 (406)
Q Consensus 5 s~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~~ 80 (406)
+.+.+..+. ...+++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.++. |..+++|++|+|++|.|+.++.
T Consensus 15 ~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 93 (208)
T 2o6s_A 15 YSQGRTSVP-TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93 (208)
T ss_dssp CSSCCSSCC-SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCCccCCC-CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH
Confidence 334444433 344678999999999999887 57899999999999999998875 7889999999999999998883
Q ss_pred --CCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCC
Q 015448 81 --IEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVA 154 (406)
Q Consensus 81 --l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~ 154 (406)
+..+++|++|+|++|.|+.++. +..+++|++|+|++|.|+.++. +. .+++|+.|+|++|++.
T Consensus 94 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~------------~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD------------RLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT------------TCTTCCEEECCSCCBC
T ss_pred hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhc------------cCCCccEEEecCCCee
Confidence 7899999999999999999864 7889999999999999988765 33 4568888888988876
Q ss_pred Cc
Q 015448 155 EY 156 (406)
Q Consensus 155 ~~ 156 (406)
+.
T Consensus 162 ~~ 163 (208)
T 2o6s_A 162 CT 163 (208)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 40
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=3.7e-16 Score=144.29 Aligned_cols=144 Identities=23% Similarity=0.357 Sum_probs=118.1
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCC
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSL 78 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l 78 (406)
+++.+.+..+.. ..+++|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.+. .|..+++|++|+|++|.|+.+
T Consensus 17 ~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 17 DCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95 (220)
T ss_dssp ECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred EcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence 344455554432 33578999999999999886 7888999999999999999873 488999999999999999998
Q ss_pred CC--CCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCC
Q 015448 79 KG--IEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNP 152 (406)
Q Consensus 79 ~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~ 152 (406)
|. |..+++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.++. +. .+++|+.|+|++|+
T Consensus 96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------------~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS------------PLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT------------TCTTCCEEECCSSC
T ss_pred CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh------------CCCCCCEEEeCCCC
Confidence 83 788999999999999999874 47889999999999999988764 33 45688999999999
Q ss_pred CCCchhH
Q 015448 153 VAEYDKL 159 (406)
Q Consensus 153 i~~~~~~ 159 (406)
+.+.+.+
T Consensus 164 ~~c~c~l 170 (220)
T 2v9t_B 164 FICDCHL 170 (220)
T ss_dssp EECSGGG
T ss_pred cCCCCcc
Confidence 9887654
No 41
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=8.9e-17 Score=149.42 Aligned_cols=168 Identities=15% Similarity=0.216 Sum_probs=137.5
Q ss_pred ccccccccCCCC--CCCCCCccEEEeeCCC-CCCCC--CCCCCCCCcEEEccC-CCCCCCC--CCCCCCCCcEEEecCCC
Q 015448 3 RLSTQQILKDNK--TCDPNSIKSLSLTHKA-LSDVS--CLTDFNNLERLDLSS-NNLTSLE--GLKHCVNLKWLSLVQNK 74 (406)
Q Consensus 3 ~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~-l~~i~--~l~~l~~L~~L~Ls~-N~l~~l~--~l~~L~~L~~L~Ls~N~ 74 (406)
+|+.++|..+.+ +..+++|++|+|++|. ++.++ .|..+++|++|+|++ |.|+.++ .|..+++|++|+|++|.
T Consensus 37 ~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~ 116 (239)
T 2xwt_C 37 KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG 116 (239)
T ss_dssp EEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC
T ss_pred EEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC
Confidence 566777777654 5568899999999997 88886 678899999999998 9999886 37789999999999999
Q ss_pred CCCCCCCCCCCCCc---EEEcCCC-CCCCCcC--CCCCCCCC-EEEccCCccCCccc-cCCCCCCcEeeCC---------
Q 015448 75 LQSLKGIEGLSKPT---VLNVGKN-KLRSMDD--VTSVVSLR-ALILNDNEIVSICK-LDQMKELNTLGMD--------- 137 (406)
Q Consensus 75 l~~l~~l~~l~~L~---~L~Ls~N-~i~~l~~--l~~l~~L~-~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls--------- 137 (406)
++.+|.+..+++|+ +|++++| .|+.++. +..+++|+ +|++++|.++.++. ....++|+.|+|+
T Consensus 117 l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 117 LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196 (239)
T ss_dssp CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEEC
T ss_pred CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCC
Confidence 99999888888888 9999999 8988763 78899999 99999999988774 2233778888876
Q ss_pred ----CCC-CCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448 138 ----SYF-FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 138 ----~~l-~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~ 176 (406)
..+ ++|+.|+|++|.++.++.. .+++|+.|+..
T Consensus 197 ~~~~~~l~~~L~~L~l~~N~l~~l~~~------~~~~L~~L~l~ 234 (239)
T 2xwt_C 197 KDAFGGVYSGPSLLDVSQTSVTALPSK------GLEHLKELIAR 234 (239)
T ss_dssp TTTTTTCSBCCSEEECTTCCCCCCCCT------TCTTCSEEECT
T ss_pred HHHhhccccCCcEEECCCCccccCChh------HhccCceeecc
Confidence 456 8899999999999988753 46666666543
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=6.5e-17 Score=155.56 Aligned_cols=157 Identities=22% Similarity=0.276 Sum_probs=97.7
Q ss_pred CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC----CCCCCCCCcEEEecCCCCCCCC-CCCCCCCCc
Q 015448 16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE----GLKHCVNLKWLSLVQNKLQSLK-GIEGLSKPT 88 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~----~l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 88 (406)
..+++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.+. .+..+++|++|+|++|.+..++ .+..+++|+
T Consensus 25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence 34567888888888887776 4677788888888888777541 2445666777777777666665 466666666
Q ss_pred EEEcCCCCCCCCc---CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC-------------CCCCCCCEEEcCC
Q 015448 89 VLNVGKNKLRSMD---DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD-------------SYFFNLNNLNLQG 150 (406)
Q Consensus 89 ~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls-------------~~l~~L~~L~Ls~ 150 (406)
+|+|++|.++.++ .+..+++|++|++++|.+..+.. +..+++|++|+|+ ..+++|+.|+|++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 6666666666543 25556666666666666654432 5556666666665 3455666666666
Q ss_pred CCCCCchhHHHHHHhcCCCcccccC
Q 015448 151 NPVAEYDKLAKKVKTLLPNLCIFNA 175 (406)
Q Consensus 151 N~i~~~~~~~~~~~~~lp~L~~Ld~ 175 (406)
|.+..+.+. .+..+++|+.|+.
T Consensus 185 n~l~~~~~~---~~~~l~~L~~L~L 206 (306)
T 2z66_A 185 CQLEQLSPT---AFNSLSSLQVLNM 206 (306)
T ss_dssp SCCCEECTT---TTTTCTTCCEEEC
T ss_pred CCcCCcCHH---HhcCCCCCCEEEC
Confidence 666555321 1344555655543
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.68 E-value=6.3e-16 Score=153.84 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=64.8
Q ss_pred ccccccccCCCC--CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCC
Q 015448 3 RLSTQQILKDNK--TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQ 76 (406)
Q Consensus 3 ~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~ 76 (406)
+|+.|.+..+.+ +..+++|++|+|++|.|+.++ .|..+++|++|+|++|.++.+++ +..+++|++|+|++|.++
T Consensus 99 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 99 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred ECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 567777777654 456899999999999999987 47899999999999999998853 888999999999999988
Q ss_pred CCC
Q 015448 77 SLK 79 (406)
Q Consensus 77 ~l~ 79 (406)
.++
T Consensus 179 ~~~ 181 (390)
T 3o6n_A 179 HVD 181 (390)
T ss_dssp BCC
T ss_pred ccc
Confidence 654
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=4.2e-16 Score=164.29 Aligned_cols=157 Identities=22% Similarity=0.250 Sum_probs=117.9
Q ss_pred CccccccccCCCC--CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCC
Q 015448 2 TRLSTQQILKDNK--TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKL 75 (406)
Q Consensus 2 ~~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l 75 (406)
++|+.|.|..+.+ ++.+++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++ .|..+++|++|+|++|.|
T Consensus 104 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence 3567777777754 456899999999999999987 4789999999999999999875 388899999999999988
Q ss_pred CCCC--CCCCC-------------------------------------CCCcEEEcCCCCCCCCcCCCCCCCCCEEEccC
Q 015448 76 QSLK--GIEGL-------------------------------------SKPTVLNVGKNKLRSMDDVTSVVSLRALILND 116 (406)
Q Consensus 76 ~~l~--~l~~l-------------------------------------~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~ 116 (406)
+.++ .+..+ ++|+.|+|++|.++.++.+..+++|+.|+|++
T Consensus 184 ~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 184 THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 263 (597)
T ss_dssp SBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred CCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCC
Confidence 7654 12111 24556666666666655667777888888888
Q ss_pred CccCCcc--ccCCCCCCcEeeCC-----------CCCCCCCEEEcCCCCCCCchh
Q 015448 117 NEIVSIC--KLDQMKELNTLGMD-----------SYFFNLNNLNLQGNPVAEYDK 158 (406)
Q Consensus 117 N~i~~l~--~l~~L~~L~~L~Ls-----------~~l~~L~~L~Ls~N~i~~~~~ 158 (406)
|.|+.+. .+..+++|++|+|+ ..+++|+.|+|++|.+..++.
T Consensus 264 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~ 318 (597)
T 3oja_B 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER 318 (597)
T ss_dssp SCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred CccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCc
Confidence 8877663 36777788888777 347788888888888877654
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=1.2e-16 Score=153.63 Aligned_cols=174 Identities=18% Similarity=0.207 Sum_probs=146.6
Q ss_pred CccccccccCCCC--CCCCCCccEEEeeCCCCCCC---C-CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCC
Q 015448 2 TRLSTQQILKDNK--TCDPNSIKSLSLTHKALSDV---S-CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNK 74 (406)
Q Consensus 2 ~~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i---~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~ 74 (406)
++|+.+.+..+.. +..+++|++|+|++|.|+.+ + .+..+++|++|+|++|.++.++. +..+++|++|+|++|.
T Consensus 33 L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~ 112 (306)
T 2z66_A 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 112 (306)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE
T ss_pred EECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc
Confidence 3567778877654 46789999999999999866 2 45578999999999999998864 8889999999999999
Q ss_pred CCCCC---CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCC--cc-ccCCCCCCcEeeCC---------
Q 015448 75 LQSLK---GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVS--IC-KLDQMKELNTLGMD--------- 137 (406)
Q Consensus 75 l~~l~---~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~--l~-~l~~L~~L~~L~Ls--------- 137 (406)
++.++ .+..+++|++|++++|.+..+. .+..+++|++|+|++|.++. ++ .+..+++|++|+|+
T Consensus 113 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 192 (306)
T 2z66_A 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192 (306)
T ss_dssp EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH
Confidence 99876 4888999999999999998754 47889999999999999986 44 38889999999998
Q ss_pred ---CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCC
Q 015448 138 ---SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPI 178 (406)
Q Consensus 138 ---~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~ 178 (406)
..+++|+.|+|++|.+..++... +..+++|+.|+....
T Consensus 193 ~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 193 TAFNSLSSLQVLNMSHNNFFSLDTFP---YKCLNSLQVLDYSLN 233 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCSBCCSGG---GTTCTTCCEEECTTS
T ss_pred HHhcCCCCCCEEECCCCccCccChhh---ccCcccCCEeECCCC
Confidence 57789999999999999886543 567899998876543
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=155.44 Aligned_cols=169 Identities=21% Similarity=0.254 Sum_probs=137.2
Q ss_pred cccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC
Q 015448 4 LSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK 79 (406)
Q Consensus 4 Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~ 79 (406)
++.+.+..+.. ..+++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++
T Consensus 38 ~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 38 GSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp CCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred CCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence 34444444432 34578999999999999886 5889999999999999999874 3889999999999999999988
Q ss_pred -C-CCCCCCCcEEEcCCCCCCCCcC---CCCCCCCCEEEccCC-ccCCcc--ccCCCCCCcEeeCC------------CC
Q 015448 80 -G-IEGLSKPTVLNVGKNKLRSMDD---VTSVVSLRALILNDN-EIVSIC--KLDQMKELNTLGMD------------SY 139 (406)
Q Consensus 80 -~-l~~l~~L~~L~Ls~N~i~~l~~---l~~l~~L~~L~Ls~N-~i~~l~--~l~~L~~L~~L~Ls------------~~ 139 (406)
. +..+++|++|+|++|.|+.++. +..+++|++|++++| .+..++ .+..+++|++|+++ ..
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence 3 8899999999999999998865 778999999999998 577764 37888999999887 56
Q ss_pred CCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448 140 FFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 140 l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~ 176 (406)
+++|++|+|++|.+..++.. .+..+++|+.|+..
T Consensus 197 l~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 197 IQNVSHLILHMKQHILLLEI---FVDVTSSVECLELR 230 (353)
T ss_dssp CSEEEEEEEECSCSTTHHHH---HHHHTTTEEEEEEE
T ss_pred cccCCeecCCCCccccchhh---hhhhcccccEEECC
Confidence 78889999999998776643 34567888876643
No 47
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=4.4e-16 Score=143.78 Aligned_cols=144 Identities=23% Similarity=0.372 Sum_probs=111.7
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCC---CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCC
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS---CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQS 77 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~---~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~ 77 (406)
+++.+.+..+.. ..+..++.|+|++|.|+.++ .|..+++|++|+|++|.|+.++. |..+++|++|+|++|.|+.
T Consensus 17 ~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~ 95 (220)
T 2v70_A 17 DCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95 (220)
T ss_dssp ECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC
T ss_pred EeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc
Confidence 456666655432 34567788888888888773 47788888888888888887753 8888888888888888888
Q ss_pred CCC--CCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCC
Q 015448 78 LKG--IEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGN 151 (406)
Q Consensus 78 l~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N 151 (406)
++. |..+++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.+.. +. .+++|+.|+|++|
T Consensus 96 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------------~l~~L~~L~L~~N 163 (220)
T 2v70_A 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD------------TLHSLSTLNLLAN 163 (220)
T ss_dssp CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT------------TCTTCCEEECCSC
T ss_pred cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc------------CCCCCCEEEecCc
Confidence 773 788888888888888888863 47788888888888888887743 33 4568899999999
Q ss_pred CCCCchhH
Q 015448 152 PVAEYDKL 159 (406)
Q Consensus 152 ~i~~~~~~ 159 (406)
++.+...+
T Consensus 164 ~l~c~c~l 171 (220)
T 2v70_A 164 PFNCNCYL 171 (220)
T ss_dssp CEECSGGG
T ss_pred CCcCCCch
Confidence 99887654
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.67 E-value=5.7e-16 Score=158.06 Aligned_cols=171 Identities=25% Similarity=0.279 Sum_probs=110.1
Q ss_pred ccccccccCCC--CCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCC
Q 015448 3 RLSTQQILKDN--KTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQ 76 (406)
Q Consensus 3 ~Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~ 76 (406)
+|+.|.|..+. .+..+++|++|+|++|.|+.+. .|..+++|++|+|++|.|+.++. |..+++|++|+|++|.+.
T Consensus 38 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 117 (477)
T 2id5_A 38 DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117 (477)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC
T ss_pred ECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc
Confidence 45666666653 3455777778888877777763 67777777777777777777753 667777777777777777
Q ss_pred CCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------C
Q 015448 77 SLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------S 138 (406)
Q Consensus 77 ~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~ 138 (406)
.++ .+..+++|+.|+|++|.+..++ .+..+++|+.|+|++|.++.++. +..+++|+.|+|+ .
T Consensus 118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~ 197 (477)
T 2id5_A 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197 (477)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSC
T ss_pred cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcc
Confidence 554 3666777777777777766643 35566666666666666665542 4444444444443 1
Q ss_pred C------------------------CCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448 139 Y------------------------FFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 139 ~------------------------l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~ 176 (406)
. ..+|+.|+|++|.+..++.. .+..+++|+.|+..
T Consensus 198 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls 256 (477)
T 2id5_A 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL---AVRHLVYLRFLNLS 256 (477)
T ss_dssp SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH---HHTTCTTCCEEECC
T ss_pred cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH---HhcCccccCeeECC
Confidence 1 22566667777777666532 35667777766654
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=155.59 Aligned_cols=154 Identities=22% Similarity=0.347 Sum_probs=120.5
Q ss_pred CccccccccCCCC--CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCC
Q 015448 2 TRLSTQQILKDNK--TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKL 75 (406)
Q Consensus 2 ~~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l 75 (406)
++|+.+.|..+.+ +..+++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++. +..+++|++|+|++|.+
T Consensus 57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 136 (353)
T 2z80_A 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136 (353)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCC
T ss_pred EECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCC
Confidence 3566777776654 566889999999999998874 68888999999999999988864 78889999999999999
Q ss_pred CCCCC---CCCCCCCcEEEcCCC-CCCCCc--CCCCCCCCCEEEccCCccCCcc--ccCCCCCCcEeeCC----------
Q 015448 76 QSLKG---IEGLSKPTVLNVGKN-KLRSMD--DVTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMD---------- 137 (406)
Q Consensus 76 ~~l~~---l~~l~~L~~L~Ls~N-~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~L~~L~~L~Ls---------- 137 (406)
+.++. +..+++|++|++++| .+..++ .+..+++|++|++++|.++.+. .+..+++|++|+++
T Consensus 137 ~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 216 (353)
T 2z80_A 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216 (353)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHH
T ss_pred cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhh
Confidence 88874 778889999999988 466654 4778888899999988887763 37777788888776
Q ss_pred --CCCCCCCEEEcCCCCCCC
Q 015448 138 --SYFFNLNNLNLQGNPVAE 155 (406)
Q Consensus 138 --~~l~~L~~L~Ls~N~i~~ 155 (406)
..+++|+.|+|++|.+..
T Consensus 217 ~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 217 FVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp HHHHTTTEEEEEEESCBCTT
T ss_pred hhhhcccccEEECCCCcccc
Confidence 235666666666666654
No 50
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=4.4e-16 Score=154.13 Aligned_cols=134 Identities=26% Similarity=0.342 Sum_probs=106.0
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCC-CCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCC
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLT-DFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQS 77 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~-~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~ 77 (406)
+++.+.+..+. ...+..++.|+|++|.|+.++ .+. .+++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.
T Consensus 24 ~c~~~~l~~iP-~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~ 102 (361)
T 2xot_A 24 SCSKQQLPNVP-QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102 (361)
T ss_dssp ECCSSCCSSCC-SSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred EeCCCCcCccC-ccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc
Confidence 45555555543 244667899999999998876 465 8899999999999999886 38889999999999999998
Q ss_pred CC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--c---CCCCCCcEeeCC
Q 015448 78 LK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--L---DQMKELNTLGMD 137 (406)
Q Consensus 78 l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l---~~L~~L~~L~Ls 137 (406)
++ .|..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.|+.++. + ..+++|+.|+|+
T Consensus 103 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 87 3888999999999999998864 47889999999999999998875 3 346666666655
No 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=6.6e-16 Score=157.62 Aligned_cols=158 Identities=23% Similarity=0.356 Sum_probs=136.9
Q ss_pred CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcE
Q 015448 16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTV 89 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~ 89 (406)
..+.+++.|+|++|.|+.++ .|..+++|++|+|++|.|+.+. .|.++++|++|+|++|.|+.++ .|..+++|++
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 44689999999999999985 7899999999999999999874 4899999999999999999998 3789999999
Q ss_pred EEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCcc--ccCCCCCCcEeeCC------------CCCCCCCEEEcCCCCC
Q 015448 90 LNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMD------------SYFFNLNNLNLQGNPV 153 (406)
Q Consensus 90 L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i 153 (406)
|+|++|.|..++ .+..+++|++|+|++|.++.+. .+..+++|+.|+|+ ..+++|+.|+|++|.+
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 999999998864 4889999999999999998876 38889999999987 5788999999999999
Q ss_pred CCchhHHHHHHhcCCCcccccCc
Q 015448 154 AEYDKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 154 ~~~~~~~~~~~~~lp~L~~Ld~~ 176 (406)
..++... +..+++|+.|+..
T Consensus 189 ~~~~~~~---~~~l~~L~~L~l~ 208 (477)
T 2id5_A 189 NAIRDYS---FKRLYRLKVLEIS 208 (477)
T ss_dssp CEECTTC---SCSCTTCCEEEEE
T ss_pred cEeChhh---cccCcccceeeCC
Confidence 8876532 5567777766654
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=4.3e-16 Score=147.77 Aligned_cols=176 Identities=23% Similarity=0.256 Sum_probs=144.3
Q ss_pred CccccccccCCC--CCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCC
Q 015448 2 TRLSTQQILKDN--KTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKL 75 (406)
Q Consensus 2 ~~Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l 75 (406)
++|+.+.+..+. .+..+++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.++ .|..+++|++|++++|.+
T Consensus 33 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 112 (276)
T 2z62_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCc
Confidence 356777777765 3566899999999999999876 6899999999999999999876 489999999999999999
Q ss_pred CCCC--CCCCCCCCcEEEcCCCCCCC--Cc-CCCCCCCCCEEEccCCccCCccc--cCCCCCCc----EeeCC-------
Q 015448 76 QSLK--GIEGLSKPTVLNVGKNKLRS--MD-DVTSVVSLRALILNDNEIVSICK--LDQMKELN----TLGMD------- 137 (406)
Q Consensus 76 ~~l~--~l~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~----~L~Ls------- 137 (406)
..++ .+..+++|++|+|++|.++. +| .+..+++|++|+|++|.|+.++. +..+..|+ .|+++
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~ 192 (276)
T 2z62_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (276)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE
T ss_pred cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc
Confidence 9887 48899999999999999988 45 58889999999999999988753 55555555 67776
Q ss_pred ----CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccC--cCCCh
Q 015448 138 ----SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA--RPIDR 180 (406)
Q Consensus 138 ----~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~--~~~~~ 180 (406)
....+|+.|+|++|.++.++.. ++..+++|+.|+. +++..
T Consensus 193 ~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 193 QPGAFKEIRLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CTTSSCSCCEEEEECCSSCCSCCCTT---TTTTCCSCCEEECCSSCBCC
T ss_pred CccccCCCcccEEECCCCceeecCHh---HhcccccccEEEccCCcccc
Confidence 2334899999999999988753 3567899987664 45443
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.65 E-value=2e-15 Score=146.76 Aligned_cols=152 Identities=22% Similarity=0.326 Sum_probs=95.0
Q ss_pred CCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCC-C-CCCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEc
Q 015448 18 PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSL-E-GLKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNV 92 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l-~-~l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 92 (406)
++.|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.+ + .|..+++|++|+|++|.|+.+| .+. ++|++|++
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEEC
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEEC
Confidence 567788888888887775 577778888888888887776 3 3777788888888888777776 232 56777777
Q ss_pred CCCCCCCCcC--CCCCCCCCEEEccCCccCCc----cccCCCCCCcEeeCC---------CCCCCCCEEEcCCCCCCCch
Q 015448 93 GKNKLRSMDD--VTSVVSLRALILNDNEIVSI----CKLDQMKELNTLGMD---------SYFFNLNNLNLQGNPVAEYD 157 (406)
Q Consensus 93 s~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l----~~l~~L~~L~~L~Ls---------~~l~~L~~L~Ls~N~i~~~~ 157 (406)
++|.++.++. +..+++|++|++++|.+... ..+..+++|++|+++ ...++|+.|+|++|.+..+.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD 208 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEEC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccC
Confidence 7777666542 56666666666666666431 125555666666655 11245555555555555443
Q ss_pred hHHHHHHhcCCCccccc
Q 015448 158 KLAKKVKTLLPNLCIFN 174 (406)
Q Consensus 158 ~~~~~~~~~lp~L~~Ld 174 (406)
.. .+..+++|+.|+
T Consensus 209 ~~---~~~~l~~L~~L~ 222 (330)
T 1xku_A 209 AA---SLKGLNNLAKLG 222 (330)
T ss_dssp TG---GGTTCTTCCEEE
T ss_pred HH---HhcCCCCCCEEE
Confidence 21 133445555444
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=1.3e-16 Score=164.47 Aligned_cols=170 Identities=21% Similarity=0.215 Sum_probs=119.9
Q ss_pred CccccccccCCC--CCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC------------------CCC
Q 015448 2 TRLSTQQILKDN--KTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG------------------LKH 61 (406)
Q Consensus 2 ~~Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~------------------l~~ 61 (406)
++|+.|.|..+. .+..+++|++|+|++|.|+.++.+..+++|++|+|++|.|+.++. ...
T Consensus 39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~ 118 (487)
T 3oja_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR 118 (487)
T ss_dssp EECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECC
T ss_pred EEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccc
Confidence 356677777665 355678888888888888776557777788777777776655431 123
Q ss_pred CCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCC-CCCCCCEEEccCCccCCccccCCCCCCcEeeC
Q 015448 62 CVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVT-SVVSLRALILNDNEIVSICKLDQMKELNTLGM 136 (406)
Q Consensus 62 L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~-~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~L 136 (406)
+++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.++ .+. .+++|++|+|++|.|+.++.+..+++|++|+|
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L 198 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL 198 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEEC
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEEC
Confidence 566777777777777654 4667778888888888877642 343 57788888888888877776667778888887
Q ss_pred C-----------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccC
Q 015448 137 D-----------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA 175 (406)
Q Consensus 137 s-----------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~ 175 (406)
+ ..+++|+.|+|++|.|+.++.. +..+++|..|+.
T Consensus 199 s~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~----l~~l~~L~~L~l 244 (487)
T 3oja_A 199 SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA----LRFSQNLEHFDL 244 (487)
T ss_dssp CSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT----CCCCTTCCEEEC
T ss_pred CCCCCCCCCHhHcCCCCccEEEecCCcCcccchh----hccCCCCCEEEc
Confidence 7 4567788888888888776642 456677776554
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=3.7e-16 Score=151.35 Aligned_cols=140 Identities=17% Similarity=0.196 Sum_probs=70.9
Q ss_pred CCCccEEEeeCCCCCC-CC-CC--CCCCCCcEEEccCCCCCCCCC-CCCC-----CCCcEEEecCCCCCCCC--CCCCCC
Q 015448 18 PNSIKSLSLTHKALSD-VS-CL--TDFNNLERLDLSSNNLTSLEG-LKHC-----VNLKWLSLVQNKLQSLK--GIEGLS 85 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~-i~-~l--~~l~~L~~L~Ls~N~l~~l~~-l~~L-----~~L~~L~Ls~N~l~~l~--~l~~l~ 85 (406)
+++|++|+|++|.|++ ++ .+ ..+++|++|+|++|.|+.++. +..+ ++|++|+|++|.|..++ .+..++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 4555555665555553 23 22 555555555555555555432 2222 55555555555555544 355555
Q ss_pred CCcEEEcCCCCCCCC---c-CC--CCCCCCCEEEccCCccCCccc-----cCCCCCCcEeeCC-------------CCCC
Q 015448 86 KPTVLNVGKNKLRSM---D-DV--TSVVSLRALILNDNEIVSICK-----LDQMKELNTLGMD-------------SYFF 141 (406)
Q Consensus 86 ~L~~L~Ls~N~i~~l---~-~l--~~l~~L~~L~Ls~N~i~~l~~-----l~~L~~L~~L~Ls-------------~~l~ 141 (406)
+|++|+|++|.+... + .+ ..+++|++|+|++|.|+.++. +..+++|++|+|+ ..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 555555555554331 1 22 455555555555555553321 2344555555555 1234
Q ss_pred CCCEEEcCCCCCCCch
Q 015448 142 NLNNLNLQGNPVAEYD 157 (406)
Q Consensus 142 ~L~~L~Ls~N~i~~~~ 157 (406)
+|+.|+|++|.|+.++
T Consensus 254 ~L~~L~Ls~N~l~~ip 269 (312)
T 1wwl_A 254 QLNSLNLSFTGLKQVP 269 (312)
T ss_dssp TCCEEECTTSCCSSCC
T ss_pred CCCEEECCCCccChhh
Confidence 5556666666555444
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.63 E-value=2.3e-15 Score=146.69 Aligned_cols=154 Identities=18% Similarity=0.293 Sum_probs=93.7
Q ss_pred CCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcEEEc
Q 015448 18 PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLKG-IEGLSKPTVLNV 92 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~L 92 (406)
+++|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.+. .|..+++|++|+|++|.++.+|. +. ++|++|++
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence 456777777777776663 5667777777777777776652 36667777777777777776662 32 56666666
Q ss_pred CCCCCCCCcC--CCCCCCCCEEEccCCccCCc---c-ccCCC--------------------CCCcEeeCC---------
Q 015448 93 GKNKLRSMDD--VTSVVSLRALILNDNEIVSI---C-KLDQM--------------------KELNTLGMD--------- 137 (406)
Q Consensus 93 s~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l---~-~l~~L--------------------~~L~~L~Ls--------- 137 (406)
++|.|+.++. +..+++|++|++++|.++.. + .+..+ ++|++|+|+
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~ 210 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL 210 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCH
Confidence 6666666542 55666666666666665421 1 12211 345555554
Q ss_pred ---CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448 138 ---SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 138 ---~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~ 176 (406)
..+++|+.|+|++|.+..++.. .+..+++|+.|+..
T Consensus 211 ~~l~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHNQIRMIENG---SLSFLPTLRELHLD 249 (332)
T ss_dssp TSSTTCTTCSCCBCCSSCCCCCCTT---GGGGCTTCCEEECC
T ss_pred HHhcCCCCCCEEECCCCcCCcCChh---HhhCCCCCCEEECC
Confidence 3556677777777777666532 14566777766543
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.63 E-value=5.8e-15 Score=143.52 Aligned_cols=171 Identities=23% Similarity=0.293 Sum_probs=134.3
Q ss_pred CccccccccCCCC--CCCCCCccEEEeeCCCCCCC-C-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCC
Q 015448 2 TRLSTQQILKDNK--TCDPNSIKSLSLTHKALSDV-S-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS 77 (406)
Q Consensus 2 ~~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i-~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~ 77 (406)
++|+.+.|..+.+ +..+++|++|+|++|.|+.+ + .+..+++|++|+|++|.|+.++.-. .++|++|++++|.++.
T Consensus 57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~~L~~L~l~~n~l~~ 135 (330)
T 1xku_A 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-PKTLQELRVHENEITK 135 (330)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC-CTTCCEEECCSSCCCB
T ss_pred EECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh-cccccEEECCCCcccc
Confidence 3567777777654 56688999999999999887 3 7888999999999999998876421 2789999999999988
Q ss_pred CC--CCCCCCCCcEEEcCCCCCCC--C-c-CCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC------------CC
Q 015448 78 LK--GIEGLSKPTVLNVGKNKLRS--M-D-DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD------------SY 139 (406)
Q Consensus 78 l~--~l~~l~~L~~L~Ls~N~i~~--l-~-~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls------------~~ 139 (406)
++ .+..+++|++|++++|.+.. + + .+..+++|++|++++|.++.++... .++|++|+|+ ..
T Consensus 136 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~ 214 (330)
T 1xku_A 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKG 214 (330)
T ss_dssp BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTT
T ss_pred cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHHHhcC
Confidence 77 37888999999999998864 2 2 4778889999999999998887522 2788888887 56
Q ss_pred CCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcC
Q 015448 140 FFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARP 177 (406)
Q Consensus 140 l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~ 177 (406)
+++|+.|+|++|.+..++.. .+..+++|+.|+...
T Consensus 215 l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAVDNG---SLANTPHLRELHLNN 249 (330)
T ss_dssp CTTCCEEECCSSCCCEECTT---TGGGSTTCCEEECCS
T ss_pred CCCCCEEECCCCcCceeChh---hccCCCCCCEEECCC
Confidence 78899999999999877642 256688888776543
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=2.9e-16 Score=161.99 Aligned_cols=156 Identities=26% Similarity=0.255 Sum_probs=123.4
Q ss_pred CCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCC-------------
Q 015448 17 DPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI------------- 81 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l------------- 81 (406)
.+++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++++..+++|++|+|++|.|+.++..
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 3568999999999999986 7899999999999999999877788999999999999887755421
Q ss_pred -----CCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cC-CCCCCcEeeCC----------CCCC
Q 015448 82 -----EGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LD-QMKELNTLGMD----------SYFF 141 (406)
Q Consensus 82 -----~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~-~L~~L~~L~Ls----------~~l~ 141 (406)
..+++|+.|+|++|.|+.++ .+..+++|++|+|++|.|+.+.. +. .+++|++|+|+ ..++
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 191 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA 191 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCT
T ss_pred CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCC
Confidence 23567788888888887763 46678888888888888877542 43 67888888888 4578
Q ss_pred CCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448 142 NLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 142 ~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~ 176 (406)
+|+.|+|++|.|+.+++. +..+++|+.|+..
T Consensus 192 ~L~~L~Ls~N~l~~~~~~----~~~l~~L~~L~Ls 222 (487)
T 3oja_A 192 KLKTLDLSSNKLAFMGPE----FQSAAGVTWISLR 222 (487)
T ss_dssp TCCEEECCSSCCCEECGG----GGGGTTCSEEECT
T ss_pred CCCEEECCCCCCCCCCHh----HcCCCCccEEEec
Confidence 899999999999887652 4567888877654
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=1.6e-16 Score=154.33 Aligned_cols=168 Identities=21% Similarity=0.217 Sum_probs=100.6
Q ss_pred ccccccccCCCC--CCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCC------------------CCC
Q 015448 3 RLSTQQILKDNK--TCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGL------------------KHC 62 (406)
Q Consensus 3 ~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l------------------~~L 62 (406)
+|+.|.|....+ +..+++|+.|+|++|.++.++.+..+++|++|+|++|.|+.++.. ..+
T Consensus 40 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~ 119 (317)
T 3o53_A 40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119 (317)
T ss_dssp ECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCC
T ss_pred ECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCcccc
Confidence 456666666542 456778888888888887665677777777777777776654311 124
Q ss_pred CCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CC-CCCCCCCEEEccCCccCCccccCCCCCCcEeeCC
Q 015448 63 VNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DV-TSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137 (406)
Q Consensus 63 ~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l-~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls 137 (406)
++|++|+|++|.++.++ .+..+++|++|+|++|.|+.++ .+ ..+++|++|+|++|.|+.++....+++|++|+|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls 199 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS 199 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECC
Confidence 45555556666555554 3555566666666666665542 22 2455666666666666665554455666666665
Q ss_pred -----------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccccc
Q 015448 138 -----------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN 174 (406)
Q Consensus 138 -----------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld 174 (406)
..+++|+.|+|++|.|..++. .+..+++|+.|+
T Consensus 200 ~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~l~~L~~L~ 243 (317)
T 3o53_A 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK----ALRFSQNLEHFD 243 (317)
T ss_dssp SSCCCEECGGGGGGTTCSEEECTTSCCCEECT----TCCCCTTCCEEE
T ss_pred CCcCCcchhhhcccCcccEEECcCCcccchhh----HhhcCCCCCEEE
Confidence 345566666666666665543 134455666544
No 60
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=5.8e-15 Score=155.19 Aligned_cols=167 Identities=21% Similarity=0.235 Sum_probs=131.2
Q ss_pred CccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCC
Q 015448 2 TRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI 81 (406)
Q Consensus 2 ~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l 81 (406)
++|+.+.+..+.. ..+++|+.|+|++|.|+.+| ..+++|++|+|++|.|+.+|.+.. +|++|+|++|.|+.+|.
T Consensus 64 L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~- 137 (571)
T 3cvr_A 64 LQLNRLNLSSLPD-NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE- 137 (571)
T ss_dssp EECCSSCCSCCCS-CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC-
T ss_pred EEeCCCCCCccCH-hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC-
Confidence 3566677666443 23578999999999999888 668899999999999998887544 89999999999998887
Q ss_pred CCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----CCCC----CC-------CEE
Q 015448 82 EGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----SYFF----NL-------NNL 146 (406)
Q Consensus 82 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----~~l~----~L-------~~L 146 (406)
.+++|+.|+|++|.|+.+|. .+++|++|+|++|.|+.++.+. ++|++|+|+ ..++ +| +.|
T Consensus 138 -~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L 212 (571)
T 3cvr_A 138 -LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFF 212 (571)
T ss_dssp -CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCC--------CCEEE
T ss_pred -cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhhHHHhhhcccccceEE
Confidence 68899999999999998886 6789999999999999888743 889999988 1221 56 999
Q ss_pred EcCCCCCCCchhHHHHHHhcCCCcccccC--cCCChhhh
Q 015448 147 NLQGNPVAEYDKLAKKVKTLLPNLCIFNA--RPIDRITK 183 (406)
Q Consensus 147 ~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~--~~~~~~~~ 183 (406)
+|++|.|+.++.. +..+++|+.|+. +++.....
T Consensus 213 ~Ls~N~l~~lp~~----l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 213 RCRENRITHIPEN----ILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp ECCSSCCCCCCGG----GGGSCTTEEEECCSSSCCHHHH
T ss_pred ecCCCcceecCHH----HhcCCCCCEEEeeCCcCCCcCH
Confidence 9999999988762 345899997764 45554433
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.62 E-value=3e-16 Score=152.31 Aligned_cols=170 Identities=15% Similarity=0.208 Sum_probs=126.3
Q ss_pred cccccccCCCCCCCCCCccEEEeeCCCCCC-------------------CCCCCCCCCCcEEEccCCCCCCCC--CCCCC
Q 015448 4 LSTQQILKDNKTCDPNSIKSLSLTHKALSD-------------------VSCLTDFNNLERLDLSSNNLTSLE--GLKHC 62 (406)
Q Consensus 4 Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~-------------------i~~l~~l~~L~~L~Ls~N~l~~l~--~l~~L 62 (406)
|+.|++....++..+++|++|+|++|.|+. ++ ...+++|++|+|++|.|+.++ .+..+
T Consensus 65 Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~N~l~~~~~~~~~~l 143 (317)
T 3o53_A 65 LSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCR 143 (317)
T ss_dssp CTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEE-ECCCSSCEEEECCSSCCCSGGGBCTGGG
T ss_pred CCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcC-ccccCCCCEEECCCCCCCCccchhhhcc
Confidence 444444444344445555555555555443 32 134678888999999988875 47778
Q ss_pred CCCcEEEecCCCCCCCC--CC-CCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccc-cCCCCCCcEeeCC-
Q 015448 63 VNLKWLSLVQNKLQSLK--GI-EGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMD- 137 (406)
Q Consensus 63 ~~L~~L~Ls~N~l~~l~--~l-~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls- 137 (406)
++|++|+|++|.|+.++ .+ ..+++|++|+|++|.|+.++....+++|++|+|++|.|+.++. +..+++|+.|+|+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcC
Confidence 99999999999998765 34 4688999999999999988877778999999999999988864 7788899999998
Q ss_pred ----------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448 138 ----------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 138 ----------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~ 176 (406)
..+++|+.|+|++|++.+... ...+..++.|+.|+..
T Consensus 224 N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~--~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 224 NKLVLIEKALRFSQNLEHFDLRGNGFHCGTL--RDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp SCCCEECTTCCCCTTCCEEECTTCCCBHHHH--HHHHHTCHHHHHHHHH
T ss_pred CcccchhhHhhcCCCCCEEEccCCCccCcCH--HHHHhccccceEEECC
Confidence 567899999999999984432 2245678888776654
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.62 E-value=1e-14 Score=149.07 Aligned_cols=135 Identities=21% Similarity=0.344 Sum_probs=71.7
Q ss_pred CCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCCC
Q 015448 19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLR 98 (406)
Q Consensus 19 ~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i~ 98 (406)
++|++|++++|.++.++.+..+++|++|++++|.++.+|.. +.+|++|++++|.++.+|.+..+++|++|++++|.++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC
Confidence 34555555555555554455555555555555555554432 2355555555555555555555555555555555555
Q ss_pred CCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC--------CCCCCCCEEEcCCCCCCCch
Q 015448 99 SMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD--------SYFFNLNNLNLQGNPVAEYD 157 (406)
Q Consensus 99 ~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls--------~~l~~L~~L~Ls~N~i~~~~ 157 (406)
.+|.+. ++|++|++++|.++.++.+..+++|++|+++ ..+++|+.|++++|.+..++
T Consensus 209 ~l~~~~--~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~ 273 (454)
T 1jl5_A 209 KLPDLP--LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLP 273 (454)
T ss_dssp SCCCCC--TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCC
T ss_pred cCCCCc--CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccC
Confidence 544321 3555555555555555555555666666655 22345556666666555544
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.62 E-value=2.1e-15 Score=157.60 Aligned_cols=129 Identities=28% Similarity=0.382 Sum_probs=105.8
Q ss_pred CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcE
Q 015448 16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTV 89 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~ 89 (406)
.-+.++++|+|++|.|+.++ .|..+++|++|+|++|.|+.++. |.+|++|++|+|++|.|+.+| .|.++++|++
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 44678999999999999886 78999999999999999998863 889999999999999999888 3889999999
Q ss_pred EEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc---cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCc
Q 015448 90 LNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK---LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEY 156 (406)
Q Consensus 90 L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~---l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~ 156 (406)
|+|++|.|+.++ .+..+++|++|+|++|.|+.+.. +..++ +|++|+|++|.|..+
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~------------~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT------------NLEHLDLSSNKIQSI 188 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT------------TCCEEECCSSCCCEE
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch------------hhhhhcccCcccccc
Confidence 999999999987 37889999999999999876542 44454 555555555555544
No 64
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=7.6e-16 Score=148.91 Aligned_cols=140 Identities=16% Similarity=0.123 Sum_probs=68.8
Q ss_pred CCCCccEEEeeCCCCCCCC------CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCC---CC---CCC
Q 015448 17 DPNSIKSLSLTHKALSDVS------CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQS---LK---GIE 82 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~l~~i~------~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~---l~---~l~ 82 (406)
.+++|++|+|++|.|+... .+..+++|++|+|++|.|+.++ .+..+++|++|+|++|.+.. ++ .+.
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 3455555555555555421 2234555555555555555543 24555555555555555432 21 124
Q ss_pred CCCCCcEEEcCCCCCCCCcC-----CCCCCCCCEEEccCCccCCc-c-ccCCC---CCCcEeeCC---------CCCCCC
Q 015448 83 GLSKPTVLNVGKNKLRSMDD-----VTSVVSLRALILNDNEIVSI-C-KLDQM---KELNTLGMD---------SYFFNL 143 (406)
Q Consensus 83 ~l~~L~~L~Ls~N~i~~l~~-----l~~l~~L~~L~Ls~N~i~~l-~-~l~~L---~~L~~L~Ls---------~~l~~L 143 (406)
.+++|++|+|++|.|+.++. +..+++|++|+|++|.|+.+ | .+..+ ++|++|+|+ .-+++|
T Consensus 195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L 274 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKL 274 (310)
T ss_dssp SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCC
T ss_pred cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCC
Confidence 45555555555555554432 23445555566665555554 2 13322 345555544 122345
Q ss_pred CEEEcCCCCCCCc
Q 015448 144 NNLNLQGNPVAEY 156 (406)
Q Consensus 144 ~~L~Ls~N~i~~~ 156 (406)
+.|+|++|.|+.+
T Consensus 275 ~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 275 RVLDLSSNRLNRA 287 (310)
T ss_dssp SCEECCSCCCCSC
T ss_pred CEEECCCCcCCCC
Confidence 5555555555544
No 65
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1e-15 Score=134.47 Aligned_cols=132 Identities=25% Similarity=0.308 Sum_probs=79.7
Q ss_pred CCCCCccEEEeeCCCCC--CCC-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCC-CCC-CCCCCCCcEE
Q 015448 16 CDPNSIKSLSLTHKALS--DVS-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS-LKG-IEGLSKPTVL 90 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~--~i~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~-l~~-l~~l~~L~~L 90 (406)
..+++|+.|+|++|.|+ .++ .+..+++|++|+|++|.|+.++.+..+++|++|+|++|.|+. +|. +..+++|++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 34566777777777776 555 446667777777777777666556667777777777777665 442 3346666666
Q ss_pred EcCCCCCCCCc---CCCCCCCCCEEEccCCccCCcccc--CCCCCCcEeeCCCCCCCCCEEEcCCCCCCCc
Q 015448 91 NVGKNKLRSMD---DVTSVVSLRALILNDNEIVSICKL--DQMKELNTLGMDSYFFNLNNLNLQGNPVAEY 156 (406)
Q Consensus 91 ~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~l--~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~ 156 (406)
+|++|.|+.++ .+..+++|++|+|++|.++.++.+ ..+ ..+++|++|++++|.+..+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~---------~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF---------KLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHH---------TTCSSCCEETTEETTSCBC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHH---------HhCccCcEecCCCCChhhc
Confidence 66666666653 355566666666666666655430 001 1334555566666555444
No 66
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.61 E-value=4.6e-16 Score=151.00 Aligned_cols=157 Identities=17% Similarity=0.205 Sum_probs=101.8
Q ss_pred CCCCCCccEEEeeC-CCCCC-CC-CCCCCCCCcEEEccCCCCC-CCC-CCCCCCCCcEEEecCCCCC-CCC-CCCCCCCC
Q 015448 15 TCDPNSIKSLSLTH-KALSD-VS-CLTDFNNLERLDLSSNNLT-SLE-GLKHCVNLKWLSLVQNKLQ-SLK-GIEGLSKP 87 (406)
Q Consensus 15 ~~~~~~L~~L~Ls~-n~l~~-i~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~~L~~L~~L~Ls~N~l~-~l~-~l~~l~~L 87 (406)
+..+++|++|+|++ |.+.. ++ .|..+++|++|+|++|.|+ .++ .|..+++|++|+|++|.|+ .+| .+..+++|
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 44567788888874 77664 44 6777778888888888776 344 3777777888888887777 455 47777777
Q ss_pred cEEEcCCCCCC-CCc-CCCCCC-CCCEEEccCCccCC-cc-ccCCCCCCcEeeCC------------CCCCCCCEEEcCC
Q 015448 88 TVLNVGKNKLR-SMD-DVTSVV-SLRALILNDNEIVS-IC-KLDQMKELNTLGMD------------SYFFNLNNLNLQG 150 (406)
Q Consensus 88 ~~L~Ls~N~i~-~l~-~l~~l~-~L~~L~Ls~N~i~~-l~-~l~~L~~L~~L~Ls------------~~l~~L~~L~Ls~ 150 (406)
++|+|++|.|+ .+| .+..++ +|++|+|++|.++. ++ .+..+. |++|+|+ ..+++|+.|+|++
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence 88888777776 344 466665 77777777777763 23 244444 6666666 3556666666666
Q ss_pred CCCCCchhHHHHHHhcCCCcccccCc
Q 015448 151 NPVAEYDKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 151 N~i~~~~~~~~~~~~~lp~L~~Ld~~ 176 (406)
|.+....+. +..+++|+.|+..
T Consensus 231 N~l~~~~~~----~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 231 NSLAFDLGK----VGLSKNLNGLDLR 252 (313)
T ss_dssp SEECCBGGG----CCCCTTCCEEECC
T ss_pred CceeeecCc----ccccCCCCEEECc
Confidence 666544331 3445566655543
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.61 E-value=5.2e-15 Score=153.15 Aligned_cols=168 Identities=19% Similarity=0.224 Sum_probs=130.5
Q ss_pred ccccccccCCCCC--CCCCCccEEEeeCCCCCCC-----CCCCCCCCCcEEEccCCCCCCCCC----CCCCCCCcEEEec
Q 015448 3 RLSTQQILKDNKT--CDPNSIKSLSLTHKALSDV-----SCLTDFNNLERLDLSSNNLTSLEG----LKHCVNLKWLSLV 71 (406)
Q Consensus 3 ~Ls~n~i~~~~~~--~~~~~L~~L~Ls~n~l~~i-----~~l~~l~~L~~L~Ls~N~l~~l~~----l~~L~~L~~L~Ls 71 (406)
+|+.+.+..+... ..+++|++|+|++|.+++. ..+..+++|++|+|++|.|+.++. +..+++|++|+|+
T Consensus 316 ~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395 (549)
T ss_dssp EEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred EeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence 3455555544322 2478899999999998863 247788999999999999988753 7888999999999
Q ss_pred CCCCCCCC-CCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCC
Q 015448 72 QNKLQSLK-GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYF 140 (406)
Q Consensus 72 ~N~l~~l~-~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l 140 (406)
+|.|+.+| .+..+++|++|+|++|.|+.++.. ..++|++|+|++|.|+.+. ..+++|++|+|+ ..+
T Consensus 396 ~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~-~~~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~N~l~~ip~~~~l 472 (549)
T 2z81_A 396 RNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC-IPQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLKTLPDASLF 472 (549)
T ss_dssp TCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTT-SCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSSCCCGGGC
T ss_pred CCCCccCChhhcccccccEEECCCCCcccccch-hcCCceEEECCCCChhhhc--ccCChhcEEECCCCccCcCCCcccC
Confidence 99999888 588889999999999999887642 1368888888888888764 567888888887 457
Q ss_pred CCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448 141 FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 141 ~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~ 176 (406)
++|+.|+|++|.++.+++. .+..+++|+.|+..
T Consensus 473 ~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 473 PVLLVMKISRNQLKSVPDG---IFDRLTSLQKIWLH 505 (549)
T ss_dssp TTCCEEECCSSCCCCCCTT---GGGGCTTCCEEECC
T ss_pred ccCCEEecCCCccCCcCHH---HHhcCcccCEEEec
Confidence 7899999999999887653 25678888876643
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.61 E-value=6.7e-15 Score=143.37 Aligned_cols=135 Identities=24% Similarity=0.325 Sum_probs=114.2
Q ss_pred CCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcC
Q 015448 19 NSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVG 93 (406)
Q Consensus 19 ~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls 93 (406)
.+++.|+++++.++.+| .+ .++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++ .+..+++|++|+|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 36899999999999988 33 479999999999999885 4999999999999999999874 59999999999999
Q ss_pred CCCCCCCcCCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC--------------CCCCCCCEEEcCCCCCCCch
Q 015448 94 KNKLRSMDDVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD--------------SYFFNLNNLNLQGNPVAEYD 157 (406)
Q Consensus 94 ~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls--------------~~l~~L~~L~Ls~N~i~~~~ 157 (406)
+|.|+.+|.... ++|++|++++|.|+.++. +..+++|++|+++ ..+ +|+.|++++|.+..++
T Consensus 111 ~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 111 KNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp SSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred CCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 999999874222 899999999999999875 8899999999988 122 6667777777666654
No 69
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.61 E-value=5.3e-15 Score=155.08 Aligned_cols=170 Identities=22% Similarity=0.286 Sum_probs=111.7
Q ss_pred cccccccCCCC--CCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCC-C
Q 015448 4 LSTQQILKDNK--TCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQ-S 77 (406)
Q Consensus 4 Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~-~ 77 (406)
|+.+.+..+.+ +..+++|++|+|++|.++.+| .+..+++|++|+|++|.++.++ .+..+++|++|+|++|.+. .
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred eecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence 44455555443 455677888888888887776 6777778888888888777663 3666777777777777665 4
Q ss_pred CC--CCCCCCCCcEEEcCCCCCCCCc----CCCCCCCCCEEEccCCccCCcc--ccCCCCCCcEeeCC------------
Q 015448 78 LK--GIEGLSKPTVLNVGKNKLRSMD----DVTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMD------------ 137 (406)
Q Consensus 78 l~--~l~~l~~L~~L~Ls~N~i~~l~----~l~~l~~L~~L~Ls~N~i~~l~--~l~~L~~L~~L~Ls------------ 137 (406)
++ .+..+++|++|++++|.+..+. .+..+++|++|++++|.+..+. .+..+++|++|+++
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 420 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence 44 2667777777777777776642 3566777777777777766553 25666777777766
Q ss_pred -CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448 138 -SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 138 -~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~ 176 (406)
..+++|+.|+|++|.+....+. .+..+++|+.|+..
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~ 457 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQ---LFDGLPALQHLNLQ 457 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTT---TTTTCTTCCEEECT
T ss_pred hhCcccCCEEECCCCccCCcCHH---HHhCCCCCCEEECC
Confidence 3456677777777776654332 24456666666544
No 70
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=1.1e-14 Score=153.01 Aligned_cols=145 Identities=21% Similarity=0.219 Sum_probs=123.5
Q ss_pred CccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCC
Q 015448 2 TRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI 81 (406)
Q Consensus 2 ~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l 81 (406)
++|+.|.|..+. ..+++|+.|+|++|.|+.++.+.. +|++|+|++|.|+.+|. .+++|++|+|++|.|+.+|.
T Consensus 85 L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~- 157 (571)
T 3cvr_A 85 LEITQNALISLP--ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE- 157 (571)
T ss_dssp EECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-
T ss_pred EECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC-
Confidence 457788888665 668999999999999999887443 99999999999999988 78999999999999999887
Q ss_pred CCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCC-------cEeeCC-----------CCCCCC
Q 015448 82 EGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKEL-------NTLGMD-----------SYFFNL 143 (406)
Q Consensus 82 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L-------~~L~Ls-----------~~l~~L 143 (406)
.+++|+.|+|++|.|+.+|.+. ++|++|+|++|.|+.++.+.. +| +.|+|+ ..+++|
T Consensus 158 -~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L 232 (571)
T 3cvr_A 158 -LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRITHIPENILSLDPT 232 (571)
T ss_dssp -CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCCCCCGGGGGSCTT
T ss_pred -cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcceecCHHHhcCCCC
Confidence 6789999999999999998754 899999999999998887333 67 999988 458899
Q ss_pred CEEEcCCCCCCCchh
Q 015448 144 NNLNLQGNPVAEYDK 158 (406)
Q Consensus 144 ~~L~Ls~N~i~~~~~ 158 (406)
+.|+|++|+++...+
T Consensus 233 ~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 233 CTIILEDNPLSSRIR 247 (571)
T ss_dssp EEEECCSSSCCHHHH
T ss_pred CEEEeeCCcCCCcCH
Confidence 999999999987644
No 71
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.60 E-value=2.8e-18 Score=155.52 Aligned_cols=159 Identities=23% Similarity=0.371 Sum_probs=132.1
Q ss_pred CCccEEEeeCC--CCCCCC-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcEEEcCC
Q 015448 19 NSIKSLSLTHK--ALSDVS-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG-IEGLSKPTVLNVGK 94 (406)
Q Consensus 19 ~~L~~L~Ls~n--~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~ 94 (406)
-.|+.+.++++ .++.++ .+..+++|++|+|++|.|+.++.+..+++|++|+|++|.|+.+|. +..+++|++|+|++
T Consensus 23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 34555555544 455555 678899999999999999999988889999999999999999985 55678999999999
Q ss_pred CCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCc-------hhHHHHHHhcC
Q 015448 95 NKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEY-------DKLAKKVKTLL 167 (406)
Q Consensus 95 N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~-------~~~~~~~~~~l 167 (406)
|.|+.++.+..+++|++|+|++|.|+.++.+..+ ..+++|++|+|++|++.+. ..+...++..+
T Consensus 103 N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l---------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 103 NQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL---------AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp EECCCHHHHHHHHHSSEEEESEEECCCHHHHHHH---------TTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CcCCcCCccccCCCCCEEECCCCcCCchhHHHHH---------hcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 9999998888899999999999999987653222 2556899999999999776 45566678899
Q ss_pred CCcccccCcCCChhhhhhh
Q 015448 168 PNLCIFNARPIDRITKNEK 186 (406)
Q Consensus 168 p~L~~Ld~~~~~~~~~~~~ 186 (406)
|+|+.||+.+++..++..+
T Consensus 174 ~~L~~Ld~~~i~~~e~~~a 192 (198)
T 1ds9_A 174 PNLKKLDGMPVDVDEREQA 192 (198)
T ss_dssp SSCSEECCGGGTTTTTTHH
T ss_pred CCcEEECCcccCHHHHHHH
Confidence 9999999999998877765
No 72
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=3e-14 Score=129.41 Aligned_cols=141 Identities=27% Similarity=0.292 Sum_probs=118.8
Q ss_pred ccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCCC--CCCCCCCcEEEcCCCC
Q 015448 21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGKNK 96 (406)
Q Consensus 21 L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~ 96 (406)
-+.++++++.++.++. ...++|++|+|++|.|+.++. |..+++|++|+|++|.|+.++. +..+++|++|+|++|.
T Consensus 9 ~~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 3678999999998872 225699999999999998875 7899999999999999999883 7899999999999999
Q ss_pred CCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccc
Q 015448 97 LRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI 172 (406)
Q Consensus 97 i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~ 172 (406)
|+.++. +..+++|++|+|++|.|+.++. +. .+++|+.|+|++|.+..++.. .+..+++|+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------------~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~ 152 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD------------KLTQLKDLRLYQNQLKSVPDG---VFDRLTSLQY 152 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT------------TCTTCCEEECCSSCCSCCCTT---TTTTCTTCCE
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhc------------cCCcCCEEECCCCccceeCHH---HhccCCCccE
Confidence 999874 6889999999999999998764 33 456899999999999987752 3567889997
Q ss_pred ccCcC
Q 015448 173 FNARP 177 (406)
Q Consensus 173 Ld~~~ 177 (406)
|+...
T Consensus 153 L~l~~ 157 (208)
T 2o6s_A 153 IWLHD 157 (208)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 76543
No 73
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=1.5e-14 Score=134.06 Aligned_cols=146 Identities=25% Similarity=0.301 Sum_probs=122.3
Q ss_pred CccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCCC--CCCCCCCcEEEcCCC
Q 015448 20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGKN 95 (406)
Q Consensus 20 ~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N 95 (406)
..+.++++++.++.+|. .-.++|++|+|++|.|+.+++ |..+++|++|+|++|.|+.++. +..+++|++|+|++|
T Consensus 20 s~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp ETTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 35689999999999983 123899999999999999853 8899999999999999999983 789999999999999
Q ss_pred CCCCCcC--CCCCCCCCEEEccCCccCCccc-cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccc
Q 015448 96 KLRSMDD--VTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI 172 (406)
Q Consensus 96 ~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~ 172 (406)
.|+.++. +..+++|++|+|++|.|+.++. +. .+++|+.|+|++|.|..++.. .+..+++|+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~------------~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~ 163 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIE------------RLTHLTHLALDQNQLKSIPHG---AFDRLSSLTH 163 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGG------------GCTTCSEEECCSSCCCCCCTT---TTTTCTTCCE
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccc------------cCCCCCEEECCCCcCCccCHH---HHhCCCCCCE
Confidence 9999874 7889999999999999998864 43 456899999999999988752 3567888887
Q ss_pred cc--CcCCChh
Q 015448 173 FN--ARPIDRI 181 (406)
Q Consensus 173 Ld--~~~~~~~ 181 (406)
|+ ++++...
T Consensus 164 L~l~~N~~~c~ 174 (229)
T 3e6j_A 164 AYLFGNPWDCE 174 (229)
T ss_dssp EECTTSCBCTT
T ss_pred EEeeCCCccCC
Confidence 65 4555443
No 74
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.59 E-value=6.3e-15 Score=148.95 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=45.2
Q ss_pred CCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCCCCCC
Q 015448 81 IEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYFFNLN 144 (406)
Q Consensus 81 l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l~~L~ 144 (406)
+..+++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.+.. +..+++|++|+|+ ..+++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 344445555555555554432 24445555555555555544421 4455555555555 3445555
Q ss_pred EEEcCCCCCCCchhHHHHHHhcCCCccccc
Q 015448 145 NLNLQGNPVAEYDKLAKKVKTLLPNLCIFN 174 (406)
Q Consensus 145 ~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld 174 (406)
+|+|++|.++.++.. .+..+++|+.|+
T Consensus 375 ~L~L~~N~l~~~~~~---~~~~l~~L~~L~ 401 (455)
T 3v47_A 375 ELALDTNQLKSVPDG---IFDRLTSLQKIW 401 (455)
T ss_dssp EEECCSSCCSCCCTT---TTTTCTTCCEEE
T ss_pred EEECCCCccccCCHh---HhccCCcccEEE
Confidence 566655555554432 134455555443
No 75
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=3.3e-15 Score=131.27 Aligned_cols=134 Identities=25% Similarity=0.348 Sum_probs=115.2
Q ss_pred CCCCCCcEEEccCCCCC--CCCC-CCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCCCC-CcC-CCCCCCCCEE
Q 015448 38 TDFNNLERLDLSSNNLT--SLEG-LKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRS-MDD-VTSVVSLRAL 112 (406)
Q Consensus 38 ~~l~~L~~L~Ls~N~l~--~l~~-l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i~~-l~~-l~~l~~L~~L 112 (406)
...++|++|+|++|.|+ .++. +..+++|++|+|++|.|+.++.+..+++|++|+|++|.|+. +|. +..+++|++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 34588999999999998 7775 68899999999999999988889999999999999999998 664 4459999999
Q ss_pred EccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCCCh
Q 015448 113 ILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDR 180 (406)
Q Consensus 113 ~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~~~ 180 (406)
+|++|.|+.++.+..+. .+++|+.|+|++|+++.++.++...+..+++|+.|+...+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~---------~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLK---------KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCSSGGGGGGS---------SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccCcchhHHHHh---------cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 99999999986543332 567999999999999999887777889999999998876653
No 76
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.59 E-value=8.1e-15 Score=155.90 Aligned_cols=155 Identities=25% Similarity=0.287 Sum_probs=131.1
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCC
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL 78 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l 78 (406)
+++.+.+..+.. ..+++|++|+|++|.|+.++ .|..+++|++|+|++|.++.+++ |..+++|++|+|++|.++.+
T Consensus 10 ~cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 10 DCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp ECCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred ECCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc
Confidence 445555555443 33589999999999999987 68899999999999999998853 78899999999999999999
Q ss_pred CC--CCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC--------------C
Q 015448 79 KG--IEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD--------------S 138 (406)
Q Consensus 79 ~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls--------------~ 138 (406)
|. |..+++|++|+|++|.++.++ .+..+++|++|+|++|.++.++. +..+++|++|+|+ .
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 168 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG
T ss_pred ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcc
Confidence 83 899999999999999999886 48899999999999999987653 7789999999987 1
Q ss_pred CCCCCCEEEcCCCCCCCchh
Q 015448 139 YFFNLNNLNLQGNPVAEYDK 158 (406)
Q Consensus 139 ~l~~L~~L~Ls~N~i~~~~~ 158 (406)
.+++|+.|+|++|.+..+++
T Consensus 169 ~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp TTCEESEEECTTCCCCCBCT
T ss_pred ccccccEEECCCCcccccCh
Confidence 34789999999999987654
No 77
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.59 E-value=2.8e-14 Score=145.89 Aligned_cols=148 Identities=24% Similarity=0.345 Sum_probs=100.2
Q ss_pred CCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCC
Q 015448 18 PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKL 97 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i 97 (406)
+++|+.|++++|.++.++.. +++|++|++++|.++.++.+. ++|++|+|++|.++.+|.+..+++|++|++++|.+
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l 165 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL 165 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcC
Confidence 46778888888877776632 367777777777777665432 57777777777777777777777777777777777
Q ss_pred CCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC--------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCC
Q 015448 98 RSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD--------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN 169 (406)
Q Consensus 98 ~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls--------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~ 169 (406)
+.+|.. +.+|++|++++|.++.++.+..+++|++|+++ ...++|+.|++++|.+..++. +..+++
T Consensus 166 ~~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~-----~~~l~~ 238 (454)
T 1jl5_A 166 KKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE-----LQNLPF 238 (454)
T ss_dssp SCCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC-----CTTCTT
T ss_pred cccCCC--cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc-----cCCCCC
Confidence 776642 24777777777777777667777777777776 223467777777777766553 345666
Q ss_pred cccccCc
Q 015448 170 LCIFNAR 176 (406)
Q Consensus 170 L~~Ld~~ 176 (406)
|+.|+..
T Consensus 239 L~~L~l~ 245 (454)
T 1jl5_A 239 LTTIYAD 245 (454)
T ss_dssp CCEEECC
T ss_pred CCEEECC
Confidence 6665543
No 78
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.5e-15 Score=130.80 Aligned_cols=126 Identities=23% Similarity=0.381 Sum_probs=63.6
Q ss_pred CCCcEEEccCCCCC--CCCC-CCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCCCC-CcC-CCCCCCCCEEEcc
Q 015448 41 NNLERLDLSSNNLT--SLEG-LKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRS-MDD-VTSVVSLRALILN 115 (406)
Q Consensus 41 ~~L~~L~Ls~N~l~--~l~~-l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i~~-l~~-l~~l~~L~~L~Ls 115 (406)
++|++|++++|.++ .++. +..+++|++|+|++|.|+.++.+..+++|++|+|++|.|+. +|. +..+++|++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 34444444444444 3332 34445555555555555444444555555555555555555 332 2335556666666
Q ss_pred CCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccC
Q 015448 116 DNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA 175 (406)
Q Consensus 116 ~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~ 175 (406)
+|.|+.++....+ ..+++|++|+|++|+++..+.+....+..+++|+.|+.
T Consensus 97 ~N~i~~~~~~~~~---------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 97 GNKIKDLSTIEPL---------KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TSCCCSHHHHGGG---------GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCcCCChHHHHHH---------hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 6655554321111 13345666666666666665554445566666666654
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=1.4e-15 Score=147.21 Aligned_cols=169 Identities=17% Similarity=0.200 Sum_probs=135.3
Q ss_pred ccccccccCCCCC----CCCCCccEEEeeCCCCCCCC-CCCCC-----CCCcEEEccCCCCCCCC--CCCCCCCCcEEEe
Q 015448 3 RLSTQQILKDNKT----CDPNSIKSLSLTHKALSDVS-CLTDF-----NNLERLDLSSNNLTSLE--GLKHCVNLKWLSL 70 (406)
Q Consensus 3 ~Ls~n~i~~~~~~----~~~~~L~~L~Ls~n~l~~i~-~l~~l-----~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~L 70 (406)
+|+.|.+....+. ..+++|++|+|++|.|+.++ .+..+ ++|++|+|++|.|+.++ .|..+++|++|+|
T Consensus 101 ~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180 (312)
T ss_dssp EEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEEC
T ss_pred EccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEEC
Confidence 4667777654332 56899999999999999886 33344 89999999999999886 4889999999999
Q ss_pred cCCCCCC---CC-C--CCCCCCCcEEEcCCCCCCCCcC-----CCCCCCCCEEEccCCccCCcc---ccCCCCCCcEeeC
Q 015448 71 VQNKLQS---LK-G--IEGLSKPTVLNVGKNKLRSMDD-----VTSVVSLRALILNDNEIVSIC---KLDQMKELNTLGM 136 (406)
Q Consensus 71 s~N~l~~---l~-~--l~~l~~L~~L~Ls~N~i~~l~~-----l~~l~~L~~L~Ls~N~i~~l~---~l~~L~~L~~L~L 136 (406)
++|.+.. ++ . +..+++|++|+|++|.|+.++. +..+++|++|+|++|.|+... .+..+++|++|+|
T Consensus 181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence 9999764 22 3 3889999999999999996542 357799999999999998854 3666899999999
Q ss_pred C---------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448 137 D---------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 137 s---------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~ 176 (406)
+ .-.++|+.|+|++|.|+.++. +..+++|+.|+..
T Consensus 261 s~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p~-----~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 261 SFTGLKQVPKGLPAKLSVLDLSYNRLDRNPS-----PDELPQVGNLSLK 304 (312)
T ss_dssp TTSCCSSCCSSCCSEEEEEECCSSCCCSCCC-----TTTSCEEEEEECT
T ss_pred CCCccChhhhhccCCceEEECCCCCCCCChh-----HhhCCCCCEEecc
Confidence 8 122689999999999998864 5678888877643
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.59 E-value=4.9e-15 Score=153.36 Aligned_cols=167 Identities=20% Similarity=0.264 Sum_probs=124.8
Q ss_pred ccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC-
Q 015448 5 STQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK- 79 (406)
Q Consensus 5 s~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~- 79 (406)
+.+.+..+.. ..+++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++ .|..+++|++|+|++|.++.++
T Consensus 13 ~~~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 13 RSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp TTSCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred CCCccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence 3344444433 33578899999999988774 6888899999999999988875 3888899999999999988877
Q ss_pred C-CCCCCCCcEEEcCCCCCCCC--c-CCCCCCCCCEEEccCCc-cCCcc--ccCCCCCCcEeeCC------------CCC
Q 015448 80 G-IEGLSKPTVLNVGKNKLRSM--D-DVTSVVSLRALILNDNE-IVSIC--KLDQMKELNTLGMD------------SYF 140 (406)
Q Consensus 80 ~-l~~l~~L~~L~Ls~N~i~~l--~-~l~~l~~L~~L~Ls~N~-i~~l~--~l~~L~~L~~L~Ls------------~~l 140 (406)
. +..+++|++|+|++|.++.+ + .+..+++|++|++++|. +..++ .+..+++|++|+++ ..+
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 3 88888999999999988864 3 47788889999998887 56665 37778888888876 445
Q ss_pred CCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccC
Q 015448 141 FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA 175 (406)
Q Consensus 141 ~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~ 175 (406)
++|++|++++|.+..++.. .+..+++|+.|+.
T Consensus 172 ~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~L 203 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLLEI---FADILSSVRYLEL 203 (549)
T ss_dssp SEEEEEEEECSBSTTHHHH---HHHSTTTBSEEEE
T ss_pred ccCceEecccCcccccchh---hHhhcccccEEEc
Confidence 6677777777777655432 2445666666554
No 81
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=149.68 Aligned_cols=158 Identities=21% Similarity=0.241 Sum_probs=88.4
Q ss_pred CccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCC--CCCCCCCCCcEEEecCCCCCCCC----CCCCCCCCcEEEcC
Q 015448 20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQNKLQSLK----GIEGLSKPTVLNVG 93 (406)
Q Consensus 20 ~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l--~~l~~L~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls 93 (406)
+|+.|++++|.+..++.+..+++|++|+|++|.++.. ..+..+++|++|+|++|.|+.++ .+..+++|++|+|+
T Consensus 303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred ceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 4566666666655554445555666666666665552 23555666666666666665432 25555666666666
Q ss_pred CCCCCC-Cc--CCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC-----------CCCCCCCEEEcCCCCCCCchhH
Q 015448 94 KNKLRS-MD--DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD-----------SYFFNLNNLNLQGNPVAEYDKL 159 (406)
Q Consensus 94 ~N~i~~-l~--~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls-----------~~l~~L~~L~Ls~N~i~~~~~~ 159 (406)
+|.++. +| .+..+++|++|+|++|.++....-...++|++|+|+ ..+++|+.|+|++|.++.++..
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH
Confidence 666555 44 244555666666666655432111111455555555 3556778888888888776653
Q ss_pred HHHHHhcCCCccccc--CcCCCh
Q 015448 160 AKKVKTLLPNLCIFN--ARPIDR 180 (406)
Q Consensus 160 ~~~~~~~lp~L~~Ld--~~~~~~ 180 (406)
.+..+++|+.|+ ++++.+
T Consensus 463 ---~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 463 ---IFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp ---TTTTCTTCCEEECCSSCBCC
T ss_pred ---HhccCCcccEEECcCCCCcc
Confidence 245677777554 344443
No 82
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.58 E-value=9e-16 Score=148.95 Aligned_cols=155 Identities=15% Similarity=0.242 Sum_probs=103.1
Q ss_pred CCccEEEeeCCCCCC---CC-CCCCCCCCcEEEccC-CCCCC-CC-CCCCCCCCcEEEecCCCCC-CCC-CCCCCCCCcE
Q 015448 19 NSIKSLSLTHKALSD---VS-CLTDFNNLERLDLSS-NNLTS-LE-GLKHCVNLKWLSLVQNKLQ-SLK-GIEGLSKPTV 89 (406)
Q Consensus 19 ~~L~~L~Ls~n~l~~---i~-~l~~l~~L~~L~Ls~-N~l~~-l~-~l~~L~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~ 89 (406)
.+|+.|+|++|.+++ ++ .+..+++|++|+|++ |.+.. +| .|..+++|++|+|++|.|+ .+| .+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 567777777777774 44 667777777777773 66653 33 3677777777777777776 555 4777777777
Q ss_pred EEcCCCCCCC-Cc-CCCCCCCCCEEEccCCccC-Ccc-ccCCCC-CCcEeeCC------------CCCCCCCEEEcCCCC
Q 015448 90 LNVGKNKLRS-MD-DVTSVVSLRALILNDNEIV-SIC-KLDQMK-ELNTLGMD------------SYFFNLNNLNLQGNP 152 (406)
Q Consensus 90 L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~L~-~L~~L~Ls------------~~l~~L~~L~Ls~N~ 152 (406)
|+|++|.|+. +| .+..+++|++|+|++|.|+ .++ .+..++ .|++|+|+ ..++ |+.|+|++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 7777777763 44 4667777777777777776 444 366665 77777776 2333 7777777777
Q ss_pred CCCchhHHHHHHhcCCCcccccCcC
Q 015448 153 VAEYDKLAKKVKTLLPNLCIFNARP 177 (406)
Q Consensus 153 i~~~~~~~~~~~~~lp~L~~Ld~~~ 177 (406)
+....+. .+..+++|+.|+...
T Consensus 209 l~~~~~~---~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 209 LEGDASV---LFGSDKNTQKIHLAK 230 (313)
T ss_dssp EEECCGG---GCCTTSCCSEEECCS
T ss_pred ccCcCCH---HHhcCCCCCEEECCC
Confidence 7654332 245667777666543
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=145.30 Aligned_cols=152 Identities=22% Similarity=0.260 Sum_probs=122.6
Q ss_pred ccccccccCCCC------CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCC---CC---CCCCCCCCcEE
Q 015448 3 RLSTQQILKDNK------TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTS---LE---GLKHCVNLKWL 68 (406)
Q Consensus 3 ~Ls~n~i~~~~~------~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~---l~---~l~~L~~L~~L 68 (406)
+|+.|.|....+ ...+++|++|+|++|.|+.++ .+..+++|++|+|++|.+.. ++ .+..+++|++|
T Consensus 123 ~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L 202 (310)
T 4glp_A 123 RLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL 202 (310)
T ss_dssp EEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC
T ss_pred EeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE
Confidence 455666654221 234789999999999998876 78899999999999999865 32 24688999999
Q ss_pred EecCCCCCCCCC-----CCCCCCCcEEEcCCCCCCCC-c-CCCCC---CCCCEEEccCCccCCccccCCCCCCcEeeCC-
Q 015448 69 SLVQNKLQSLKG-----IEGLSKPTVLNVGKNKLRSM-D-DVTSV---VSLRALILNDNEIVSICKLDQMKELNTLGMD- 137 (406)
Q Consensus 69 ~Ls~N~l~~l~~-----l~~l~~L~~L~Ls~N~i~~l-~-~l~~l---~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls- 137 (406)
+|++|.|+.++. +..+++|++|+|++|.|+.+ | .+..+ ++|++|+|++|.|+.++... .++|++|+|+
T Consensus 203 ~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~ 281 (310)
T 4glp_A 203 ALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSS 281 (310)
T ss_dssp BCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCS
T ss_pred ECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCC
Confidence 999999987763 46789999999999999986 4 35544 79999999999999887522 3789999998
Q ss_pred ---------CCCCCCCEEEcCCCCCCC
Q 015448 138 ---------SYFFNLNNLNLQGNPVAE 155 (406)
Q Consensus 138 ---------~~l~~L~~L~Ls~N~i~~ 155 (406)
..+++|+.|+|++|+|+.
T Consensus 282 N~l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 282 NRLNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred CcCCCCchhhhCCCccEEECcCCCCCC
Confidence 567899999999999975
No 84
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=3.4e-15 Score=128.57 Aligned_cols=121 Identities=25% Similarity=0.351 Sum_probs=105.0
Q ss_pred CCCCCccEEEeeCCCCC--CCC-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCC-CCC-CCCCCCCcEE
Q 015448 16 CDPNSIKSLSLTHKALS--DVS-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS-LKG-IEGLSKPTVL 90 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~--~i~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~-l~~-l~~l~~L~~L 90 (406)
..+++|+.|++++|.++ .++ .+..+++|++|+|++|.|+.++.+..+++|++|+|++|.|+. +|. +..+++|++|
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 44688999999999998 666 678999999999999999999789999999999999999998 674 5669999999
Q ss_pred EcCCCCCCCC---cCCCCCCCCCEEEccCCccCCccc-----cCCCCCCcEeeC
Q 015448 91 NVGKNKLRSM---DDVTSVVSLRALILNDNEIVSICK-----LDQMKELNTLGM 136 (406)
Q Consensus 91 ~Ls~N~i~~l---~~l~~l~~L~~L~Ls~N~i~~l~~-----l~~L~~L~~L~L 136 (406)
++++|.|+.+ ..+..+++|++|++++|.++.++. +..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 9999999996 358899999999999999998875 556665555554
No 85
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=1.8e-14 Score=132.87 Aligned_cols=142 Identities=21% Similarity=0.319 Sum_probs=120.2
Q ss_pred cEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCC
Q 015448 22 KSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNK 96 (406)
Q Consensus 22 ~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~ 96 (406)
+.++++++.++.+| .+. ++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++ .|..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 67999999999998 343 78999999999999886 4899999999999999999874 59999999999999999
Q ss_pred CCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccc
Q 015448 97 LRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI 172 (406)
Q Consensus 97 i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~ 172 (406)
|+.++. +..+++|++|+|++|.|+.++. +. .+++|+.|+|++|.|..++.. .+..+++|+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~------------~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~ 156 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ------------DLHNLNLLSLYDNKLQTIAKG---TFSPLRAIQT 156 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT------------TCTTCCEEECCSSCCSCCCTT---TTTTCTTCCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC------------CCCCCCEEECCCCcCCEECHH---HHhCCCCCCE
Confidence 999874 6889999999999999998854 33 456899999999999988753 2567888886
Q ss_pred cc--CcCCCh
Q 015448 173 FN--ARPIDR 180 (406)
Q Consensus 173 Ld--~~~~~~ 180 (406)
|+ .+++..
T Consensus 157 L~L~~N~~~c 166 (220)
T 2v9t_B 157 MHLAQNPFIC 166 (220)
T ss_dssp EECCSSCEEC
T ss_pred EEeCCCCcCC
Confidence 65 445443
No 86
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=1.3e-14 Score=143.53 Aligned_cols=157 Identities=25% Similarity=0.336 Sum_probs=130.5
Q ss_pred ccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC--CC-CCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCC
Q 015448 21 IKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG--LK-HCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGK 94 (406)
Q Consensus 21 L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~--l~-~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~ 94 (406)
-+.++++++.|+.+| .+ ...|++|+|++|.|+.++. +. .+++|++|+|++|.|+.++ .|..+++|++|+|++
T Consensus 20 ~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 368999999999998 33 3569999999999998864 65 8999999999999999888 499999999999999
Q ss_pred CCCCCCcC--CCCCCCCCEEEccCCccCCcc--ccCCCCCCcEeeCC---------------CCCCCCCEEEcCCCCCCC
Q 015448 95 NKLRSMDD--VTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMD---------------SYFFNLNNLNLQGNPVAE 155 (406)
Q Consensus 95 N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~L~~L~~L~Ls---------------~~l~~L~~L~Ls~N~i~~ 155 (406)
|.|+.++. +..+++|++|+|++|.|+.+. .+..+++|+.|+|+ ..+++|+.|+|++|.|..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99999863 789999999999999999885 38899999999998 137899999999999998
Q ss_pred chhHHHHHHhcCCCc--c--cccCcCCChhh
Q 015448 156 YDKLAKKVKTLLPNL--C--IFNARPIDRIT 182 (406)
Q Consensus 156 ~~~~~~~~~~~lp~L--~--~Ld~~~~~~~~ 182 (406)
++.. .+..++.+ + .|.++++.+..
T Consensus 178 l~~~---~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 178 LPLT---DLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp CCHH---HHHHSCHHHHTTEECCSSCEECCH
T ss_pred cCHH---HhhhccHhhcceEEecCCCccCCc
Confidence 8743 24556653 3 45566665443
No 87
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.57 E-value=1.4e-14 Score=146.46 Aligned_cols=121 Identities=20% Similarity=0.364 Sum_probs=93.3
Q ss_pred CCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCC-CCC--CCCCCCCCcEEEecCCCCCCC-C-CCCCCCCCcE
Q 015448 17 DPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLT-SLE--GLKHCVNLKWLSLVQNKLQSL-K-GIEGLSKPTV 89 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~-~l~--~l~~L~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~ 89 (406)
.+++|++|+|++|.|+.+. .|..+++|++|+|++|.+. .++ .|..+++|++|+|++|.++.+ | .+..+++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 3577888888888888763 6788888888888888876 333 377888888888888888866 3 5788888888
Q ss_pred EEcCCCCCCC--CcC--CCCCCCCCEEEccCCccCCccc---cCCCCCCcEeeCC
Q 015448 90 LNVGKNKLRS--MDD--VTSVVSLRALILNDNEIVSICK---LDQMKELNTLGMD 137 (406)
Q Consensus 90 L~Ls~N~i~~--l~~--l~~l~~L~~L~Ls~N~i~~l~~---l~~L~~L~~L~Ls 137 (406)
|+|++|.++. ++. +..+++|++|+|++|.|+.+.. +..+++|++|+|+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 8888888876 223 7778888888888888877632 6778888888877
No 88
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=5.4e-14 Score=149.31 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=44.2
Q ss_pred CCCCEEEccCCccCCccccCCCCCCcEeeCC--------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccC--c
Q 015448 107 VSLRALILNDNEIVSICKLDQMKELNTLGMD--------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA--R 176 (406)
Q Consensus 107 ~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls--------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~--~ 176 (406)
++|+.|+|++|.|+.++ ..+++|++|+|+ ..+++|+.|+|++|.|+.++. .+..+++|+.|+. +
T Consensus 221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~lp~----~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPE----SLIHLSSETTVNLEGN 294 (622)
T ss_dssp TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCSCCG----GGGGSCTTCEEECCSC
T ss_pred CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCcCCH----HHhhccccCEEEecCC
Confidence 45666666666666555 344666777666 345678888888888887764 2567888886654 4
Q ss_pred CCChh
Q 015448 177 PIDRI 181 (406)
Q Consensus 177 ~~~~~ 181 (406)
++...
T Consensus 295 ~l~~~ 299 (622)
T 3g06_A 295 PLSER 299 (622)
T ss_dssp CCCHH
T ss_pred CCCCc
Confidence 55543
No 89
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.57 E-value=1.4e-14 Score=151.85 Aligned_cols=153 Identities=23% Similarity=0.333 Sum_probs=120.4
Q ss_pred ccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCC-C
Q 015448 5 STQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSL-K 79 (406)
Q Consensus 5 s~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l-~ 79 (406)
+.+.+..+.. ..+++|++|+|++|.++.++ .|..+++|++|+|++|.|+.++ .|.++++|++|+|++|.|+.+ |
T Consensus 19 ~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p 97 (606)
T 3vq2_A 19 MDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 97 (606)
T ss_dssp TTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT
T ss_pred cCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh
Confidence 3344444432 34688999999999998875 6889999999999999998874 388899999999999999887 4
Q ss_pred -CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCC--ccc-cCCCCCCcEeeCCC------------CCC
Q 015448 80 -GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVS--ICK-LDQMKELNTLGMDS------------YFF 141 (406)
Q Consensus 80 -~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~--l~~-l~~L~~L~~L~Ls~------------~l~ 141 (406)
.|..+++|++|+|++|.++.++ .+..+++|++|+|++|.++. ++. +..+++|++|+|+. .++
T Consensus 98 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 5889999999999999998876 57889999999999999885 443 88888888888871 111
Q ss_pred C----CCEEEcCCCCCCCchh
Q 015448 142 N----LNNLNLQGNPVAEYDK 158 (406)
Q Consensus 142 ~----L~~L~Ls~N~i~~~~~ 158 (406)
+ +..|++++|.+..++.
T Consensus 178 ~L~~~l~~L~l~~n~l~~~~~ 198 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPIDFIQD 198 (606)
T ss_dssp HCTTCCCEEECTTCCCCEECT
T ss_pred ccccccceeeccCCCcceeCc
Confidence 2 4478888888877654
No 90
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.57 E-value=1.7e-14 Score=153.44 Aligned_cols=156 Identities=23% Similarity=0.297 Sum_probs=89.6
Q ss_pred ccccccccCCCC--CCCCCCccEEEeeCCCCCC-CC--CCCCCCCCcEEEccCCCCCCCC--------------------
Q 015448 3 RLSTQQILKDNK--TCDPNSIKSLSLTHKALSD-VS--CLTDFNNLERLDLSSNNLTSLE-------------------- 57 (406)
Q Consensus 3 ~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~-i~--~l~~l~~L~~L~Ls~N~l~~l~-------------------- 57 (406)
+|+.|.+..+.+ +..+++|+.|+|++|.++. ++ .+..+++|++|+|++|.+..++
T Consensus 387 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccc
Confidence 345555554432 3446667777777776653 32 4555566666666665544332
Q ss_pred --------CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc----------CCCCCCCCCEEEccCC
Q 015448 58 --------GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD----------DVTSVVSLRALILNDN 117 (406)
Q Consensus 58 --------~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~----------~l~~l~~L~~L~Ls~N 117 (406)
.+..+++|++|+|++|.|+.++ .+..+++|++|+|++|.++.++ .+..+++|++|+|++|
T Consensus 467 ~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp BCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred cccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 2455566666666666666555 2556666666666666655431 1455566666666666
Q ss_pred ccCCccc--cCCCCCCcEeeCC------------CCCCCCCEEEcCCCCCCCchh
Q 015448 118 EIVSICK--LDQMKELNTLGMD------------SYFFNLNNLNLQGNPVAEYDK 158 (406)
Q Consensus 118 ~i~~l~~--l~~L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i~~~~~ 158 (406)
.|+.++. +..+++|++|+|+ ..+++|+.|+|++|.++.++.
T Consensus 547 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence 6666553 5566666666665 345666666666666666554
No 91
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.57 E-value=2.8e-15 Score=157.22 Aligned_cols=153 Identities=20% Similarity=0.312 Sum_probs=96.7
Q ss_pred CCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCC---CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEE
Q 015448 18 PNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLE---GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLN 91 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~---~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ 91 (406)
+++|++|+|++|.++.++ .+..+++|++|+|++|.+..++ .+..+++|++|+|++|.+..+. .+..+++|++|+
T Consensus 375 ~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp CSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 455555555555555544 5556666666666666666552 3566677777777777766433 366677777777
Q ss_pred cCCCCCCC--Cc-CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCCCCCCEEEcCCCCCC
Q 015448 92 VGKNKLRS--MD-DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYFFNLNNLNLQGNPVA 154 (406)
Q Consensus 92 Ls~N~i~~--l~-~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i~ 154 (406)
|++|.++. +| .+..+++|++|+|++|.++.++. +..+++|++|+|+ ..+++|+.|+|++|.++
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 77777665 34 35667777777777777766542 6667777777776 45667777777777777
Q ss_pred CchhHHHHHHhcCC-Cccccc
Q 015448 155 EYDKLAKKVKTLLP-NLCIFN 174 (406)
Q Consensus 155 ~~~~~~~~~~~~lp-~L~~Ld 174 (406)
.++.. +..++ +|+.|+
T Consensus 535 ~~p~~----~~~l~~~L~~l~ 551 (606)
T 3vq2_A 535 TSKGI----LQHFPKSLAFFN 551 (606)
T ss_dssp CEESC----GGGSCTTCCEEE
T ss_pred ccCHh----HhhhcccCcEEE
Confidence 66642 34454 466554
No 92
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=1.2e-14 Score=159.71 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=33.6
Q ss_pred CCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCC-CCCCCCC-CcEEEecCCCCCCCC
Q 015448 16 CDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLE-GLKHCVN-LKWLSLVQNKLQSLK 79 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~-~l~~L~~-L~~L~Ls~N~l~~l~ 79 (406)
..+++|+.|+|++|.|+.+|.|..+++|++|+|++|.|+.+| .+..+++ |+.|+|++|.|+.+|
T Consensus 570 ~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp TTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC
T ss_pred hcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc
Confidence 344555555555555555555555555555555555555444 2444555 555555555555444
No 93
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.57 E-value=1.9e-14 Score=150.93 Aligned_cols=143 Identities=25% Similarity=0.304 Sum_probs=123.0
Q ss_pred CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcE
Q 015448 16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTV 89 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~ 89 (406)
..+..+++|+|++|.|+.++ .|..+++|++|+|++|.|+.+. .|..+++|++|+|++|.+..++ .+..+++|++
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence 44678999999999999884 7899999999999999998874 4899999999999999998764 5899999999
Q ss_pred EEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCc--cccCCCCCCcEeeCC------------CCCCCCC--EEEcCCC
Q 015448 90 LNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSI--CKLDQMKELNTLGMD------------SYFFNLN--NLNLQGN 151 (406)
Q Consensus 90 L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l--~~l~~L~~L~~L~Ls------------~~l~~L~--~L~Ls~N 151 (406)
|+|++|.|+.++ .+..+++|++|+|++|.++.+ +.+..+++|++|+|+ ..+++|+ .|++++|
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 999999999973 588999999999999999886 456668888888887 4677777 7888888
Q ss_pred CCCCchh
Q 015448 152 PVAEYDK 158 (406)
Q Consensus 152 ~i~~~~~ 158 (406)
.+..+++
T Consensus 190 ~l~~~~~ 196 (606)
T 3t6q_A 190 DIAGIEP 196 (606)
T ss_dssp CCCEECT
T ss_pred ccCccCh
Confidence 8877654
No 94
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.56 E-value=5.2e-14 Score=146.83 Aligned_cols=143 Identities=24% Similarity=0.242 Sum_probs=78.0
Q ss_pred CCCCCccEEEeeCCCCCCC-C-CCCCCCCCcEEEccCCCCCCCC----CCCCCCCCcEEEecCCCCCC-CC--CCCCCCC
Q 015448 16 CDPNSIKSLSLTHKALSDV-S-CLTDFNNLERLDLSSNNLTSLE----GLKHCVNLKWLSLVQNKLQS-LK--GIEGLSK 86 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~~i-~-~l~~l~~L~~L~Ls~N~l~~l~----~l~~L~~L~~L~Ls~N~l~~-l~--~l~~l~~ 86 (406)
..+++|++|++++|.++.. + .+..+++|++|+|++|.|+.++ .+..+++|++|+|++|.++. +| .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 3455566666666666552 2 4555666666666666665543 25555666666666666654 55 2555566
Q ss_pred CcEEEcCCCCCCCCcCCCCC-CCCCEEEccCCccCCccc-cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHH
Q 015448 87 PTVLNVGKNKLRSMDDVTSV-VSLRALILNDNEIVSICK-LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVK 164 (406)
Q Consensus 87 L~~L~Ls~N~i~~l~~l~~l-~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~ 164 (406)
|++|+|++|.|+... ...+ ++|++|+|++|.|+.++. +.. +++|+.|+|++|.++.++.. .+
T Consensus 430 L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N~l~~ip~~~~~------------l~~L~~L~L~~N~l~~l~~~---~~ 493 (562)
T 3a79_B 430 ILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNNRIMSIPKDVTH------------LQALQELNVASNQLKSVPDG---VF 493 (562)
T ss_dssp CCEEECCSSCCCGGG-GSSCCTTCSEEECCSSCCCCCCTTTTS------------SCCCSEEECCSSCCCCCCTT---ST
T ss_pred CCEEECCCCCCCcch-hhhhcCcCCEEECCCCcCcccChhhcC------------CCCCCEEECCCCCCCCCCHH---HH
Confidence 666666666654321 0111 456666666666655543 333 45666666666666665542 24
Q ss_pred hcCCCccccc
Q 015448 165 TLLPNLCIFN 174 (406)
Q Consensus 165 ~~lp~L~~Ld 174 (406)
..+++|+.|+
T Consensus 494 ~~l~~L~~L~ 503 (562)
T 3a79_B 494 DRLTSLQYIW 503 (562)
T ss_dssp TTCTTCCCEE
T ss_pred hcCCCCCEEE
Confidence 4556666543
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=3e-14 Score=131.39 Aligned_cols=144 Identities=20% Similarity=0.300 Sum_probs=120.0
Q ss_pred ccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC---CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCC
Q 015448 21 IKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG---LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGK 94 (406)
Q Consensus 21 L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~---l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~ 94 (406)
-+.|++++|.++.+| .+ ...+++|+|++|.|+.++. |..+++|++|+|++|.|+.++ .|..+++|++|+|++
T Consensus 13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 358999999999998 33 3567999999999998842 789999999999999999887 499999999999999
Q ss_pred CCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCc
Q 015448 95 NKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 170 (406)
Q Consensus 95 N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L 170 (406)
|.|+.++. +..+++|++|+|++|.|+.+.. +. .+++|+.|+|++|.|+.+.+. .+..+++|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L 155 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI------------GLSSVRLLSLYDNQITTVAPG---AFDTLHSL 155 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST------------TCTTCSEEECTTSCCCCBCTT---TTTTCTTC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC------------CCccCCEEECCCCcCCEECHH---HhcCCCCC
Confidence 99999863 8899999999999999998853 33 456899999999999988542 35678899
Q ss_pred ccccC--cCCChh
Q 015448 171 CIFNA--RPIDRI 181 (406)
Q Consensus 171 ~~Ld~--~~~~~~ 181 (406)
+.|+. +++...
T Consensus 156 ~~L~L~~N~l~c~ 168 (220)
T 2v70_A 156 STLNLLANPFNCN 168 (220)
T ss_dssp CEEECCSCCEECS
T ss_pred CEEEecCcCCcCC
Confidence 87764 454433
No 96
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.55 E-value=3.1e-14 Score=151.35 Aligned_cols=151 Identities=16% Similarity=0.272 Sum_probs=101.2
Q ss_pred CccEEEeeCCCCCCC-C-CCC-------CCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCCC--CCCC--
Q 015448 20 SIKSLSLTHKALSDV-S-CLT-------DFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKG--IEGL-- 84 (406)
Q Consensus 20 ~L~~L~Ls~n~l~~i-~-~l~-------~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~~--l~~l-- 84 (406)
+|+.|+|++|.|+.. + .+. .+++|++|+|++|.|+.++. +..+++|++|+|++|.|+.+|. +..+
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence 566666666666553 2 344 55677777777777776654 4457777777777777777662 2222
Q ss_pred -----CCCcEEEcCCCCCCCCcC-CC--CCCCCCEEEccCCccCCccc-cCCCCCCcEeeCC------------------
Q 015448 85 -----SKPTVLNVGKNKLRSMDD-VT--SVVSLRALILNDNEIVSICK-LDQMKELNTLGMD------------------ 137 (406)
Q Consensus 85 -----~~L~~L~Ls~N~i~~l~~-l~--~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls------------------ 137 (406)
++|+.|+|++|.|+.+|. +. .+++|+.|+|++|.|+.++. +..+++|++|+|+
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp ECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred cccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence 277788888887777763 44 77788888888888877764 6677778887772
Q ss_pred CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448 138 SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 138 ~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~ 176 (406)
..+++|+.|+|++|.+..++.. ..++|+.|+..
T Consensus 563 ~~l~~L~~L~Ls~N~l~~ip~~------~~~~L~~L~Ls 595 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDIRKVNEK------ITPNISVLDIK 595 (636)
T ss_dssp GGCSSCCEEECCSSCCCBCCSC------CCTTCCEEECC
T ss_pred hcCCCCCEEECCCCcCCccCHh------HhCcCCEEECc
Confidence 3567778888888888666642 23667766543
No 97
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.55 E-value=8.7e-14 Score=147.70 Aligned_cols=71 Identities=27% Similarity=0.311 Sum_probs=35.0
Q ss_pred cccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC
Q 015448 4 LSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79 (406)
Q Consensus 4 Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~ 79 (406)
|+.+.+..+.. ..+++|+.|+|++|.|+.++. .+++|++|+|++|.|+.++. .+++|++|+|++|.|+.+|
T Consensus 47 ls~n~L~~lp~-~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~ 117 (622)
T 3g06_A 47 VGESGLTTLPD-CLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLP 117 (622)
T ss_dssp CCSSCCSCCCS-CCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCC
T ss_pred ecCCCcCccCh-hhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCC
Confidence 44444443322 223555666666665555544 34555555555555555543 3444455555444444443
No 98
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=4.1e-14 Score=128.03 Aligned_cols=125 Identities=21% Similarity=0.295 Sum_probs=108.9
Q ss_pred cEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCC-CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCC
Q 015448 22 KSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLR 98 (406)
Q Consensus 22 ~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~ 98 (406)
+.+++++|.|+.+|.- -.++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++ .|..+++|++|+|++|.|+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 6899999999999831 2468999999999999986 4889999999999999999988 4999999999999999999
Q ss_pred CCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhH
Q 015448 99 SMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKL 159 (406)
Q Consensus 99 ~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~ 159 (406)
.++ .+..+++|++|+|++|.|+.++. +. .+++|+.|+|++|++.+.+.+
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~------------~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN------------DLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT------------TCTTCCEEECCSSCEECSGGG
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhh------------cCccccEEEeCCCCeecCCcC
Confidence 986 48899999999999999998875 33 456889999999999876653
No 99
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=2.9e-14 Score=156.61 Aligned_cols=171 Identities=16% Similarity=0.215 Sum_probs=130.4
Q ss_pred CccccccccCCCCCCCCCCccEEEeeCCCCCCCC-CCCCCCC-CcEEEccCCCCCCCCC-CCCC--CCCcEEEecCCCCC
Q 015448 2 TRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS-CLTDFNN-LERLDLSSNNLTSLEG-LKHC--VNLKWLSLVQNKLQ 76 (406)
Q Consensus 2 ~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~-L~~L~Ls~N~l~~l~~-l~~L--~~L~~L~Ls~N~l~ 76 (406)
++|+.|.+..+..+..+++|+.|+|++|.|+.++ .+..+++ |++|+|++|.|+.+|. +..+ ++|+.|+|++|.|.
T Consensus 578 L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 578 LDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp EECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred EECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCC
Confidence 3567777776666677889999999999999887 7888888 9999999999998875 4444 34899999999886
Q ss_pred CC-CCCC------CCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc--cC-------CCCCCcEeeCC-
Q 015448 77 SL-KGIE------GLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LD-------QMKELNTLGMD- 137 (406)
Q Consensus 77 ~l-~~l~------~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~-------~L~~L~~L~Ls- 137 (406)
.. |.+. .+++|+.|+|++|.|+.+|. +..+++|+.|+|++|.|+.++. +. .|++|+.|+|+
T Consensus 658 g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp TTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred CccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCC
Confidence 43 3222 44588899999998888873 3478888899999888887764 22 22378888887
Q ss_pred ----------C--CCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448 138 ----------S--YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 138 ----------~--~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~ 176 (406)
. .+++|+.|+|++|.|..++. .+..+++|+.|+..
T Consensus 738 N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~----~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT----QPLNSSQLKAFGIR 784 (876)
T ss_dssp SCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCC----GGGGCTTCCEEECC
T ss_pred CCCccchHHhhhccCCCcCEEEeCCCCCCccch----hhhcCCCCCEEECC
Confidence 3 67888888888888888754 24578888877664
No 100
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.54 E-value=3e-14 Score=147.80 Aligned_cols=143 Identities=26% Similarity=0.359 Sum_probs=120.7
Q ss_pred CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcE
Q 015448 16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTV 89 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~ 89 (406)
..+.+++.|+|++|.|+.++ .|..+++|++|+|++|.|+.++ .|..+++|++|+|++|.++.++ .|..+++|++
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 34678999999999999875 7899999999999999999885 3889999999999999999877 5899999999
Q ss_pred EEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCc--c-ccCCCCCCcEeeCC------------CCCCCC----CEEEc
Q 015448 90 LNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSI--C-KLDQMKELNTLGMD------------SYFFNL----NNLNL 148 (406)
Q Consensus 90 L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l--~-~l~~L~~L~~L~Ls------------~~l~~L----~~L~L 148 (406)
|++++|.++.++. +..+++|++|+|++|.++.+ + .+..+++|++|+++ ..+++| ..|++
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 9999999999874 88999999999999999873 4 37888888888887 123344 67888
Q ss_pred CCCCCCCchh
Q 015448 149 QGNPVAEYDK 158 (406)
Q Consensus 149 s~N~i~~~~~ 158 (406)
++|.+..+++
T Consensus 185 ~~n~l~~~~~ 194 (570)
T 2z63_A 185 SLNPMNFIQP 194 (570)
T ss_dssp TTCCCCEECT
T ss_pred CCCCceecCH
Confidence 8888876653
No 101
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=6.4e-14 Score=126.36 Aligned_cols=124 Identities=25% Similarity=0.381 Sum_probs=107.6
Q ss_pred cEEEeeCCCCCCCCC-CCCCCCCcEEEccCCCCCCCCC---CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCC
Q 015448 22 KSLSLTHKALSDVSC-LTDFNNLERLDLSSNNLTSLEG---LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKN 95 (406)
Q Consensus 22 ~~L~Ls~n~l~~i~~-l~~l~~L~~L~Ls~N~l~~l~~---l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N 95 (406)
+.|++++|.|+.+|. + ..+|++|+|++|.|+.++. |..+++|++|+|++|.|+.++ .|..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 789999999999983 3 3499999999999998864 789999999999999999884 5999999999999999
Q ss_pred CCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhH
Q 015448 96 KLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKL 159 (406)
Q Consensus 96 ~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~ 159 (406)
.|+.++. +..+++|++|+|++|.|+.+.. +. .+++|++|+|++|++.+...+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------------~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE------------HLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSST------------TCTTCCEEECTTCCBCCSGGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhh------------cCCCCCEEEeCCCCccCcCcc
Confidence 9999763 8899999999999999988743 33 456899999999999887654
No 102
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.53 E-value=1.7e-14 Score=150.63 Aligned_cols=122 Identities=25% Similarity=0.277 Sum_probs=109.7
Q ss_pred CccccccccCCCC--CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCC
Q 015448 2 TRLSTQQILKDNK--TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKL 75 (406)
Q Consensus 2 ~~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l 75 (406)
++|+.|.|..+.+ +..+++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++. |.+|++|++|+|++|.|
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l 136 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence 4788999988864 567899999999999999986 68999999999999999999874 89999999999999999
Q ss_pred CCCC--CCCCCCCCcEEEcCCCCCCCC--c-CCCCCCCCCEEEccCCccCCcc
Q 015448 76 QSLK--GIEGLSKPTVLNVGKNKLRSM--D-DVTSVVSLRALILNDNEIVSIC 123 (406)
Q Consensus 76 ~~l~--~l~~l~~L~~L~Ls~N~i~~l--~-~l~~l~~L~~L~Ls~N~i~~l~ 123 (406)
+.++ .|+.+++|++|+|++|.|+.+ | .+..+++|++|+|++|.|+.+.
T Consensus 137 ~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 9998 489999999999999999875 3 4678999999999999998775
No 103
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.53 E-value=1.1e-14 Score=154.80 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=45.9
Q ss_pred cccccccCCCC---CCCCCCccEEEeeCCCCC-CCCCCCCCCCCcEEEccCCCCCCCCC-CCCCCC-CcEEEecCCCCCC
Q 015448 4 LSTQQILKDNK---TCDPNSIKSLSLTHKALS-DVSCLTDFNNLERLDLSSNNLTSLEG-LKHCVN-LKWLSLVQNKLQS 77 (406)
Q Consensus 4 Ls~n~i~~~~~---~~~~~~L~~L~Ls~n~l~-~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~-L~~L~Ls~N~l~~ 77 (406)
|+.|.+..+.. +..+++|+.|+|++|.++ .++.+..+++|++|+|++|.++.+|. +..+++ |++|+|++|.++.
T Consensus 312 L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~ 391 (636)
T 4eco_A 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391 (636)
T ss_dssp CCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS
T ss_pred CCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc
Confidence 44444443332 344555666666666555 44444444455555555555444432 444444 5555555555554
Q ss_pred CC-CCCCC--CCCcEEEcCCCCCCC
Q 015448 78 LK-GIEGL--SKPTVLNVGKNKLRS 99 (406)
Q Consensus 78 l~-~l~~l--~~L~~L~Ls~N~i~~ 99 (406)
+| .+..+ ++|++|+|++|.|+.
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred cchhhhhcccCccCEEECcCCcCCC
Confidence 44 22222 244444444444443
No 104
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=2.5e-13 Score=120.23 Aligned_cols=128 Identities=30% Similarity=0.353 Sum_probs=109.2
Q ss_pred CccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCCC--CCCCCCCcEEEcCCC
Q 015448 20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGKN 95 (406)
Q Consensus 20 ~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N 95 (406)
..+.++++++.++.++. ...++|++|+|++|.++.++. |..+++|++|+|++|.|+.++. +..+++|++|+|++|
T Consensus 8 ~~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp ETTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 35789999999999882 234799999999999998864 7899999999999999999883 789999999999999
Q ss_pred CCCCCcC--CCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchh
Q 015448 96 KLRSMDD--VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDK 158 (406)
Q Consensus 96 ~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~ 158 (406)
.|+.++. +..+++|++|+|++|.|+.++.- .+ ..+++|++|+|++|++.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~---------~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDG-IF---------DRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TT---------TTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHH-Hh---------cCCcccCEEEecCCCeeccCc
Confidence 9999874 68899999999999999987751 11 145689999999999988765
No 105
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.52 E-value=9.1e-14 Score=143.13 Aligned_cols=119 Identities=24% Similarity=0.239 Sum_probs=53.8
Q ss_pred CCCCccEEEeeCCCCCCC-C-CCCCCCCCcEEEccCCCCCCCC----CCCCCCCCcEEEecCCCCCC-CC--CCCCCCCC
Q 015448 17 DPNSIKSLSLTHKALSDV-S-CLTDFNNLERLDLSSNNLTSLE----GLKHCVNLKWLSLVQNKLQS-LK--GIEGLSKP 87 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~l~~i-~-~l~~l~~L~~L~Ls~N~l~~l~----~l~~L~~L~~L~Ls~N~l~~-l~--~l~~l~~L 87 (406)
.+++|++|++++|.++.. + .+..+++|++|+|++|.|+.++ .+..+++|++|+|++|.+.. +| .+..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 344455555555554441 2 4444445555555555544332 14444455555555555444 44 14444455
Q ss_pred cEEEcCCCCCCCC-c-CCCCCCCCCEEEccCCccCCccc-cCCCCCCcEeeCC
Q 015448 88 TVLNVGKNKLRSM-D-DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMD 137 (406)
Q Consensus 88 ~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls 137 (406)
++|+|++|.++.. + .+. ++|++|+|++|.|+.++. +..+++|++|+|+
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVA 452 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECC
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECC
Confidence 5555555544331 1 111 344555555555544443 3344445555444
No 106
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=150.81 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=101.6
Q ss_pred CCCCCccEEEeeCCCCCCC---C-CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC---CCCCCCCC
Q 015448 16 CDPNSIKSLSLTHKALSDV---S-CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK---GIEGLSKP 87 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~~i---~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~---~l~~l~~L 87 (406)
..+++|+.|++++|.++.+ + .+..+++|++|+|++|.+..++. +..+++|++|+|++|.+..++ .+..+++|
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 3455566666666665544 1 34456666666666666655542 566777777777777766543 36677777
Q ss_pred cEEEcCCCCCCCC-c-CCCCCCCCCEEEccCCccC--Ccc-ccCCCCCCcEeeCC------------CCCCCCCEEEcCC
Q 015448 88 TVLNVGKNKLRSM-D-DVTSVVSLRALILNDNEIV--SIC-KLDQMKELNTLGMD------------SYFFNLNNLNLQG 150 (406)
Q Consensus 88 ~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~N~i~--~l~-~l~~L~~L~~L~Ls------------~~l~~L~~L~Ls~ 150 (406)
++|+|++|.+... + .+..+++|++|+|++|.++ .++ .+..+++|++|+|+ ..+++|+.|+|++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 7777777777663 2 3666777777777777775 244 36677777777776 4567788888888
Q ss_pred CCCCCchhHHHHHHhcCCCcccccC
Q 015448 151 NPVAEYDKLAKKVKTLLPNLCIFNA 175 (406)
Q Consensus 151 N~i~~~~~~~~~~~~~lp~L~~Ld~ 175 (406)
|.++.++.. .+..+++|+.|+.
T Consensus 504 n~l~~~~~~---~~~~l~~L~~L~l 525 (570)
T 2z63_A 504 NQLKSVPDG---IFDRLTSLQKIWL 525 (570)
T ss_dssp SCCSCCCTT---TTTTCTTCCEEEC
T ss_pred CcCCCCCHH---HhhcccCCcEEEe
Confidence 877776542 2456777776553
No 107
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=1.2e-13 Score=124.92 Aligned_cols=122 Identities=22% Similarity=0.363 Sum_probs=106.7
Q ss_pred CccccccccCCCCCCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCC
Q 015448 2 TRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL 78 (406)
Q Consensus 2 ~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l 78 (406)
++++.+.+..+.. ..+.+|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++. |..+++|++|+|++|.|+.+
T Consensus 15 l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i 93 (193)
T 2wfh_A 15 VRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93 (193)
T ss_dssp EECTTSCCSSCCS-CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred EEcCCCCCCcCCC-CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe
Confidence 3566677766543 34689999999999999997 88899999999999999999864 89999999999999999998
Q ss_pred C--CCCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc
Q 015448 79 K--GIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK 124 (406)
Q Consensus 79 ~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~ 124 (406)
+ .|..+++|++|+|++|.|+.++. +..+++|+.|+|++|.+..-..
T Consensus 94 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 8 49999999999999999999873 7889999999999999876543
No 108
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=2.6e-15 Score=149.29 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=34.0
Q ss_pred CCCCCccEEEeeCCCCCCCC------------CCCCCCCCcEEEccCCCCCC-----CC-CCCCCCCCcEEEecCCCCC
Q 015448 16 CDPNSIKSLSLTHKALSDVS------------CLTDFNNLERLDLSSNNLTS-----LE-GLKHCVNLKWLSLVQNKLQ 76 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~~i~------------~l~~l~~L~~L~Ls~N~l~~-----l~-~l~~L~~L~~L~Ls~N~l~ 76 (406)
..+++|++|+|++|.+..+. .|..+++|++|+|++|.|+. ++ .+..+++|++|+|++|.|+
T Consensus 57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 34566666666666554331 12456666666666666665 22 2444555555555555554
No 109
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.50 E-value=5.4e-14 Score=152.45 Aligned_cols=96 Identities=23% Similarity=0.352 Sum_probs=44.3
Q ss_pred ccccccccCCCCC---CCCCCccEEEeeCCCCCCCC--C---CCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCC
Q 015448 3 RLSTQQILKDNKT---CDPNSIKSLSLTHKALSDVS--C---LTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNK 74 (406)
Q Consensus 3 ~Ls~n~i~~~~~~---~~~~~L~~L~Ls~n~l~~i~--~---l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~ 74 (406)
+|+.|.+....+. ..+++|++|+|++|.++... . +..+++|++|+|++|.++...++..+++|++|+|++|.
T Consensus 132 ~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~ 211 (768)
T 3rgz_A 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN 211 (768)
T ss_dssp ECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSC
T ss_pred ECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCc
Confidence 3445554433221 34566666666666665432 1 44444455555544444443333444444444444444
Q ss_pred CCC-CCCCCCCCCCcEEEcCCCCCC
Q 015448 75 LQS-LKGIEGLSKPTVLNVGKNKLR 98 (406)
Q Consensus 75 l~~-l~~l~~l~~L~~L~Ls~N~i~ 98 (406)
+.. +|.+..+++|++|+|++|.++
T Consensus 212 l~~~~~~l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 212 FSTGIPFLGDCSALQHLDISGNKLS 236 (768)
T ss_dssp CCSCCCBCTTCCSCCEEECCSSCCC
T ss_pred CCCCCcccccCCCCCEEECcCCcCC
Confidence 443 223444444444444444443
No 110
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.50 E-value=4.2e-14 Score=154.89 Aligned_cols=151 Identities=20% Similarity=0.251 Sum_probs=119.8
Q ss_pred cccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCC-CCCCC--CCCCCCCCcEEEecCCCCCCC
Q 015448 4 LSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNN-LTSLE--GLKHCVNLKWLSLVQNKLQSL 78 (406)
Q Consensus 4 Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~-l~~l~--~l~~L~~L~~L~Ls~N~l~~l 78 (406)
.+.+.+..+.. .+++|++|+|++|.|+.+. .|..+++|++|+|++|. +..++ .|.++++|++|+|++|.|..+
T Consensus 11 cs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 11 YRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp ESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred ccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence 34445555544 6789999999999998874 78899999999999995 44443 488999999999999999977
Q ss_pred -C-CCCCCCCCcEEEcCCCCCCC-Cc-C--CCCCCCCCEEEccCCccCCcc---ccCCCCCCcEeeCCC-----------
Q 015448 79 -K-GIEGLSKPTVLNVGKNKLRS-MD-D--VTSVVSLRALILNDNEIVSIC---KLDQMKELNTLGMDS----------- 138 (406)
Q Consensus 79 -~-~l~~l~~L~~L~Ls~N~i~~-l~-~--l~~l~~L~~L~Ls~N~i~~l~---~l~~L~~L~~L~Ls~----------- 138 (406)
| .|..+++|++|+|++|.++. ++ . +..+++|++|+|++|.++.+. .+..+++|++|+|+.
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence 4 58999999999999999986 33 3 788999999999999998763 378888888888871
Q ss_pred -CC--CCCCEEEcCCCCCCCc
Q 015448 139 -YF--FNLNNLNLQGNPVAEY 156 (406)
Q Consensus 139 -~l--~~L~~L~Ls~N~i~~~ 156 (406)
.+ ++|+.|+|++|.+...
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~~ 189 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYSR 189 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCCC
T ss_pred ccccCCccceEECCCCccccc
Confidence 11 6778888888877654
No 111
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.50 E-value=7.5e-14 Score=151.37 Aligned_cols=158 Identities=24% Similarity=0.282 Sum_probs=79.8
Q ss_pred CCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCC-CCCCCCCCCcEEEecCCCCCC-CC-CCCCCCCCcEEEc
Q 015448 16 CDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL-EGLKHCVNLKWLSLVQNKLQS-LK-GIEGLSKPTVLNV 92 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l-~~l~~L~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 92 (406)
..+++|++|++++|.+++...+..+++|++|+|++|.++.. +.+..+++|++|+|++|.++. +| .+..+++|++|+|
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred ccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 34455555555555555444445555555555555555442 335555555555555555552 23 3555555555555
Q ss_pred CCCCCCCCcCCCCCCCCCEEEccCCccC-Cccc-cCC-CCCCcEeeCC------------CCCCCCCEEEcCCCCCC-Cc
Q 015448 93 GKNKLRSMDDVTSVVSLRALILNDNEIV-SICK-LDQ-MKELNTLGMD------------SYFFNLNNLNLQGNPVA-EY 156 (406)
Q Consensus 93 s~N~i~~l~~l~~l~~L~~L~Ls~N~i~-~l~~-l~~-L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i~-~~ 156 (406)
++|.+........+++|++|+|++|.++ .++. +.. +++|++|+|+ ..+++|+.|+|++|.+. .+
T Consensus 255 s~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i 334 (768)
T 3rgz_A 255 SSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334 (768)
T ss_dssp CSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence 5555543221124555555555555554 3332 222 3555555555 34555666666666554 33
Q ss_pred hhHHHHHHhcCCCcccccCc
Q 015448 157 DKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 157 ~~~~~~~~~~lp~L~~Ld~~ 176 (406)
+. ..+..+++|+.|+..
T Consensus 335 p~---~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 335 PM---DTLLKMRGLKVLDLS 351 (768)
T ss_dssp CH---HHHTTCTTCCEEECC
T ss_pred CH---HHHhcCCCCCEEeCc
Confidence 32 124556666665544
No 112
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=4.2e-13 Score=118.82 Aligned_cols=120 Identities=28% Similarity=0.409 Sum_probs=103.5
Q ss_pred ccccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCC
Q 015448 3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL 78 (406)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l 78 (406)
+++.+.+..+. ...+++|+.|+|++|.|+.++ .+..+++|++|+|++|.|+.++. |..+++|++|+|++|.|+.+
T Consensus 13 ~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 91 (177)
T 2o6r_A 13 RCNSKGLTSVP-TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91 (177)
T ss_dssp ECCSSCCSSCC-TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EecCCCCccCC-CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc
Confidence 44555555544 344689999999999999987 57899999999999999999875 78999999999999999998
Q ss_pred CC--CCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCcc
Q 015448 79 KG--IEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSIC 123 (406)
Q Consensus 79 ~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~ 123 (406)
+. +..+++|++|+|++|.|+.++. +..+++|++|+|++|.+....
T Consensus 92 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 83 7899999999999999999874 678999999999999987643
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=4.6e-14 Score=148.31 Aligned_cols=121 Identities=26% Similarity=0.401 Sum_probs=105.8
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccC
Q 015448 42 NLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIV 120 (406)
Q Consensus 42 ~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~ 120 (406)
.|++|+|++|.|+.+|.|..+++|+.|+|++|.|+.+| .++.+++|+.|+|++|.|+.+|.+..+++|+.|+|++|.|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCC
Confidence 58899999999999988999999999999999999998 68999999999999999999998899999999999999998
Q ss_pred Cc--cc-cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccccc
Q 015448 121 SI--CK-LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN 174 (406)
Q Consensus 121 ~l--~~-l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld 174 (406)
.+ +. +. .+++|+.|+|++|+++..++....++..+|+|+.|+
T Consensus 522 ~~~~p~~l~------------~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 522 QSAAIQPLV------------SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSSTTGGGG------------GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCcHHHh------------cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 87 32 43 456889999999999988776666777899998875
No 114
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.48 E-value=5.4e-13 Score=139.12 Aligned_cols=132 Identities=19% Similarity=0.215 Sum_probs=71.7
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCC-CC-CCCCCCCCcEEEcCCCCCCCCc----CCCCCCCCCEEEcc
Q 015448 42 NLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS-LK-GIEGLSKPTVLNVGKNKLRSMD----DVTSVVSLRALILN 115 (406)
Q Consensus 42 ~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~i~~l~----~l~~l~~L~~L~Ls 115 (406)
+|++|++++|.+..+..+..+++|++|+|++|.++. +| .+..+++|++|+|++|.|+.++ .+..+++|++|+|+
T Consensus 332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred cceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 345555555554443333444455555555555443 22 3444555555555555554432 13444555555555
Q ss_pred CCccCC-ccc--cCCCCCCcEeeCC---------CCC-CCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcC
Q 015448 116 DNEIVS-ICK--LDQMKELNTLGMD---------SYF-FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARP 177 (406)
Q Consensus 116 ~N~i~~-l~~--l~~L~~L~~L~Ls---------~~l-~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~ 177 (406)
+|.++. ++. +..+++|++|+|+ ..+ ++|+.|+|++|.|+.++.. +..+++|+.|+...
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~----~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKD----VTHLQALQELNVAS 482 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTT----TTSSCCCSEEECCS
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChh----hcCCCCCCEEECCC
Confidence 555444 332 4444455555544 123 5899999999999988753 23789999777543
No 115
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.48 E-value=2.4e-13 Score=148.85 Aligned_cols=104 Identities=25% Similarity=0.388 Sum_probs=52.9
Q ss_pred CCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEc
Q 015448 19 NSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNV 92 (406)
Q Consensus 19 ~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L 92 (406)
++|+.|+|++|.+..+. .+..+++|++|+|++|.|+.++ .|..+++|++|+|++|.++.++ .+..+++|+.|+|
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 44555555555555432 4445555555555555555442 2455555555555555555442 3455555555555
Q ss_pred CCCCCCCCc--CCCCCCCCCEEEccCCccCCc
Q 015448 93 GKNKLRSMD--DVTSVVSLRALILNDNEIVSI 122 (406)
Q Consensus 93 s~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l 122 (406)
++|.|..++ .+..+++|++|+|++|.++.+
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 555555443 244455555555555554443
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=7.8e-14 Score=146.56 Aligned_cols=106 Identities=26% Similarity=0.314 Sum_probs=99.2
Q ss_pred CCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCC
Q 015448 19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKL 97 (406)
Q Consensus 19 ~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i 97 (406)
..|+.|+|++|.|+.+|.+..+++|++|+|++|.|+.+|. |..+++|++|+|++|.|+.+|.+..+++|++|+|++|.|
T Consensus 441 ~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL 520 (567)
T ss_dssp TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCC
Confidence 3589999999999999989999999999999999999974 899999999999999999999999999999999999999
Q ss_pred CCC--c-CCCCCCCCCEEEccCCccCCccc
Q 015448 98 RSM--D-DVTSVVSLRALILNDNEIVSICK 124 (406)
Q Consensus 98 ~~l--~-~l~~l~~L~~L~Ls~N~i~~l~~ 124 (406)
+.+ | .+..+++|+.|+|++|.|+.++.
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 997 5 58899999999999999998765
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.46 E-value=1.2e-13 Score=135.98 Aligned_cols=171 Identities=16% Similarity=0.183 Sum_probs=112.6
Q ss_pred ccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCC-CC--CCCCCCCCcE-EEecCCCCCCC
Q 015448 5 STQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTS-LE--GLKHCVNLKW-LSLVQNKLQSL 78 (406)
Q Consensus 5 s~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~-l~--~l~~L~~L~~-L~Ls~N~l~~l 78 (406)
+.+.++.+. ...+.++++|+|++|.|+.++ .|..+++|++|+|++|.+.. ++ .|.++++|.. +.++.|+|+.+
T Consensus 17 ~~~~Lt~iP-~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 17 QESKVTEIP-SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp ESTTCCSCC-TTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred cCCCCCccC-cCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 334444442 233678899999999998886 68889999999999998754 44 3677777664 55666788877
Q ss_pred C--CCCCCCCCcEEEcCCCCCCCCcCC---------------------------CCC-CCCCEEEccCCccCCccc-cCC
Q 015448 79 K--GIEGLSKPTVLNVGKNKLRSMDDV---------------------------TSV-VSLRALILNDNEIVSICK-LDQ 127 (406)
Q Consensus 79 ~--~l~~l~~L~~L~Ls~N~i~~l~~l---------------------------~~l-~~L~~L~Ls~N~i~~l~~-l~~ 127 (406)
+ .|..+++|++|++++|.|..++.. ..+ ..|+.|+|++|.|+.++. ...
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~ 175 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN 175 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc
Confidence 6 377788888888888877665321 111 235566666666666653 334
Q ss_pred CCCCcEeeCC-------------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCCC
Q 015448 128 MKELNTLGMD-------------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPID 179 (406)
Q Consensus 128 L~~L~~L~Ls-------------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~~ 179 (406)
..+|..|++. ..+++|+.|+|++|.|+.++.. .+..+++|+.++...+.
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLK 237 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCC
T ss_pred ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcC
Confidence 4556666654 4567788888888888877652 24556666655554433
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.45 E-value=4.4e-13 Score=120.81 Aligned_cols=122 Identities=22% Similarity=0.316 Sum_probs=104.7
Q ss_pred CccccccccCCCCCCCCCCccEEEeeCCCCCCCC---CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCC
Q 015448 2 TRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS---CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQ 76 (406)
Q Consensus 2 ~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~---~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~ 76 (406)
++++.+.+..+.. ..+.+|++|+|++|.|+.++ .+..+++|++|+|++|.|+.+. .|..+++|++|+|++|.|+
T Consensus 13 l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 91 (192)
T 1w8a_A 13 VDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91 (192)
T ss_dssp EECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC
T ss_pred EEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC
Confidence 3566777765543 33569999999999999986 3889999999999999999984 4899999999999999999
Q ss_pred CCC--CCCCCCCCcEEEcCCCCCCCC-c-CCCCCCCCCEEEccCCccCCccc
Q 015448 77 SLK--GIEGLSKPTVLNVGKNKLRSM-D-DVTSVVSLRALILNDNEIVSICK 124 (406)
Q Consensus 77 ~l~--~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~N~i~~l~~ 124 (406)
.++ .+..+++|++|+|++|.|+.+ + .+..+++|++|+|++|.++....
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 887 388999999999999999986 3 58889999999999999986543
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=5.2e-14 Score=124.85 Aligned_cols=120 Identities=15% Similarity=0.179 Sum_probs=96.7
Q ss_pred CccccccccCCCCCCCCC-CccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCC
Q 015448 2 TRLSTQQILKDNKTCDPN-SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL 78 (406)
Q Consensus 2 ~~Ls~n~i~~~~~~~~~~-~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l 78 (406)
++|+.|++..+.....+. +|+.|+|++|.|+.++.+..+++|++|+|++|.|+.++. +..+++|++|+|++|.|..+
T Consensus 24 L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 103 (176)
T 1a9n_A 24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103 (176)
T ss_dssp EECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCG
T ss_pred EEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcc
Confidence 356777887775555544 999999999999999889999999999999999999874 58899999999999999887
Q ss_pred CC---CCCCCCCcEEEcCCCCCCCCcC-----CCCCCCCCEEEccCCccCC
Q 015448 79 KG---IEGLSKPTVLNVGKNKLRSMDD-----VTSVVSLRALILNDNEIVS 121 (406)
Q Consensus 79 ~~---l~~l~~L~~L~Ls~N~i~~l~~-----l~~l~~L~~L~Ls~N~i~~ 121 (406)
|. +..+++|++|++++|.++.++. +..+++|++|++++|.+..
T Consensus 104 ~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 104 GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred hhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 74 6677788888888888777664 5566777777777766543
No 120
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=5e-14 Score=139.99 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=71.0
Q ss_pred CCCccEEEeeCCCCCCCC------CCCCCCCCcEEEccCCCCCCCC-----C-------CCCCCCCcEEEecCCCCCC--
Q 015448 18 PNSIKSLSLTHKALSDVS------CLTDFNNLERLDLSSNNLTSLE-----G-------LKHCVNLKWLSLVQNKLQS-- 77 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i~------~l~~l~~L~~L~Ls~N~l~~l~-----~-------l~~L~~L~~L~Ls~N~l~~-- 77 (406)
+++|++|+|++|.|+... .+..+++|++|+|++|.+..+. . |..+++|++|+|++|.|+.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 566777777777776531 4667777777777777665442 1 2567777777777777765
Q ss_pred ---CC-CCCCCCCCcEEEcCCCCCCCC-----c-CCCCC---------CCCCEEEccCCccCC--cc----ccCCCCCCc
Q 015448 78 ---LK-GIEGLSKPTVLNVGKNKLRSM-----D-DVTSV---------VSLRALILNDNEIVS--IC----KLDQMKELN 132 (406)
Q Consensus 78 ---l~-~l~~l~~L~~L~Ls~N~i~~l-----~-~l~~l---------~~L~~L~Ls~N~i~~--l~----~l~~L~~L~ 132 (406)
++ .+..+++|++|+|++|.|+.. + .+..+ ++|++|+|++|.|+. ++ .+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 33 355666677777776666432 1 12222 556666666665542 22 133445555
Q ss_pred EeeCC
Q 015448 133 TLGMD 137 (406)
Q Consensus 133 ~L~Ls 137 (406)
+|+|+
T Consensus 191 ~L~L~ 195 (386)
T 2ca6_A 191 TVKMV 195 (386)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 55554
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=6.9e-14 Score=151.05 Aligned_cols=107 Identities=23% Similarity=0.319 Sum_probs=74.3
Q ss_pred CCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEc
Q 015448 16 CDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNV 92 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 92 (406)
..+..|+.|+|++|.|..++ .+..+++|++|+|++|.|+.+|. |..|++|++|+|++|.|+.|| .|..|++|++|+|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF 300 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEEC
T ss_pred ccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEEC
Confidence 34566777777777777665 44567777777777777776653 667777777777777777776 5667777777777
Q ss_pred CCCCCCCCc-CCCCCCCCCEEEccCCccCCc
Q 015448 93 GKNKLRSMD-DVTSVVSLRALILNDNEIVSI 122 (406)
Q Consensus 93 s~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l 122 (406)
++|.|+.+| .|..+++|++|+|++|.|+..
T Consensus 301 ~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 301 FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 777777766 466777777777777777653
No 122
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.39 E-value=2.5e-14 Score=138.76 Aligned_cols=135 Identities=19% Similarity=0.253 Sum_probs=68.0
Q ss_pred CCCccEEEeeCCCCCC--CC-CCCCCCCCcEEEccCCCCCCC--CCCCCCCCCcEEEecCC-CCCC--CC-CCCCCCCCc
Q 015448 18 PNSIKSLSLTHKALSD--VS-CLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQN-KLQS--LK-GIEGLSKPT 88 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~--i~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~L~~L~~L~Ls~N-~l~~--l~-~l~~l~~L~ 88 (406)
+++|++|+|++|.++. ++ .+..+++|++|+|++|.++.. ..+..+++|++|+|++| .++. ++ .+..+++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 4555556665555543 22 345555566666665555432 12444555666666655 4442 33 244555566
Q ss_pred EEEcCCC-CCCC--Cc-CCCCCC-CCCEEEccCCc--cC--Cccc-cCCCCCCcEeeCC-------------CCCCCCCE
Q 015448 89 VLNVGKN-KLRS--MD-DVTSVV-SLRALILNDNE--IV--SICK-LDQMKELNTLGMD-------------SYFFNLNN 145 (406)
Q Consensus 89 ~L~Ls~N-~i~~--l~-~l~~l~-~L~~L~Ls~N~--i~--~l~~-l~~L~~L~~L~Ls-------------~~l~~L~~ 145 (406)
+|+|++| .++. ++ .+..++ +|++|+|++|. ++ .++. +..+++|++|+|+ ..+++|++
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 6666655 5543 22 234455 56666666553 22 1221 3445555555554 33455555
Q ss_pred EEcCCCC
Q 015448 146 LNLQGNP 152 (406)
Q Consensus 146 L~Ls~N~ 152 (406)
|+|++|.
T Consensus 252 L~l~~~~ 258 (336)
T 2ast_B 252 LSLSRCY 258 (336)
T ss_dssp EECTTCT
T ss_pred eeCCCCC
Confidence 5555553
No 123
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=6.5e-12 Score=111.65 Aligned_cols=101 Identities=24% Similarity=0.286 Sum_probs=58.2
Q ss_pred cEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCc
Q 015448 44 ERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNE 118 (406)
Q Consensus 44 ~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~ 118 (406)
+.|++++|.++.+|. + .++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++. +..+++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 445555555555543 2 255556666666665553 25556666666666666666552 4556666666666666
Q ss_pred cCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchh
Q 015448 119 IVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDK 158 (406)
Q Consensus 119 i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~ 158 (406)
|+.++. +. .+++|++|+|++|++.+.+.
T Consensus 93 l~~l~~~~~~------------~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 93 LKSIPRGAFD------------NLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCTTTTT------------TCTTCSEEECCSSCBCTTBG
T ss_pred cceeCHHHhc------------cccCCCEEEeCCCCcccccc
Confidence 665543 22 34466777777777766543
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.36 E-value=2e-12 Score=127.15 Aligned_cols=135 Identities=15% Similarity=0.161 Sum_probs=107.7
Q ss_pred cEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCC-CCC--CCCCCCCCcE-EEcCC
Q 015448 22 KSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQ-SLK--GIEGLSKPTV-LNVGK 94 (406)
Q Consensus 22 ~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~-L~Ls~ 94 (406)
++++.+++.++.+| .+ .++|++|+|++|.|+.++. |.++++|++|+|++|.+. .++ .|.++++|.. +.++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 67899999999998 44 4689999999999999974 899999999999999985 466 3788888765 66778
Q ss_pred CCCCCCc--CCCCCCCCCEEEccCCccCCccccC--CCCCCcEeeCC-------------CC-CCCCCEEEcCCCCCCCc
Q 015448 95 NKLRSMD--DVTSVVSLRALILNDNEIVSICKLD--QMKELNTLGMD-------------SY-FFNLNNLNLQGNPVAEY 156 (406)
Q Consensus 95 N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~l~--~L~~L~~L~Ls-------------~~-l~~L~~L~Ls~N~i~~~ 156 (406)
|.|+.++ .+..+++|++|++++|.|+.++... ....+..|++. .. ...|+.|+|++|.|+.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 9999985 4789999999999999999887533 33445556553 12 23577888999988877
Q ss_pred hh
Q 015448 157 DK 158 (406)
Q Consensus 157 ~~ 158 (406)
+.
T Consensus 170 ~~ 171 (350)
T 4ay9_X 170 HN 171 (350)
T ss_dssp CT
T ss_pred Ch
Confidence 64
No 125
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=6.4e-12 Score=111.09 Aligned_cols=102 Identities=25% Similarity=0.321 Sum_probs=62.9
Q ss_pred CcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCC
Q 015448 43 LERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDN 117 (406)
Q Consensus 43 L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N 117 (406)
.+.|++++|.|+.+|. + ..+|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++. +..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3555666666665553 2 255666666666666654 26666666666666666666552 456667777777777
Q ss_pred ccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchh
Q 015448 118 EIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDK 158 (406)
Q Consensus 118 ~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~ 158 (406)
.|+.++. +. .+++|+.|+|++|++.+.+.
T Consensus 89 ~l~~~~~~~~~------------~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFD------------NLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTT------------TCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhc------------CCCCCCEEEeCCCCCCCCch
Confidence 7766653 22 34467777777777776653
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=7.7e-13 Score=142.86 Aligned_cols=110 Identities=26% Similarity=0.324 Sum_probs=90.8
Q ss_pred CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEE
Q 015448 36 CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRAL 112 (406)
Q Consensus 36 ~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L 112 (406)
.+..+.+|+.|+|++|.|..++. +..+++|++|+|++|.|+.+| .|..|++|++|+|++|.|+.+| .+..+++|++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 56788899999999999988863 668899999999999999888 5888999999999999999887 58888999999
Q ss_pred EccCCccCCccc-cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCch
Q 015448 113 ILNDNEIVSICK-LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYD 157 (406)
Q Consensus 113 ~Ls~N~i~~l~~-l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~ 157 (406)
+|++|.|+.++. +. .+++|+.|+|++|+|....
T Consensus 299 ~L~~N~l~~lp~~~~------------~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFG------------NLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp ECCSSCCCCCCSSTT------------SCTTCCCEECTTSCCCSHH
T ss_pred ECCCCCCCccChhhh------------cCCCccEEeCCCCccCCCC
Confidence 999999988764 33 4568888999999998653
No 127
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=9.3e-12 Score=110.63 Aligned_cols=101 Identities=28% Similarity=0.380 Sum_probs=91.0
Q ss_pred ccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCCC--CCCCCCCcEEEcCCC
Q 015448 21 IKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGKN 95 (406)
Q Consensus 21 L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N 95 (406)
-+.|++++|.++.+| .+ .++|++|+|++|.|+.+++ |..+++|++|+|++|.|+.+|. |..+++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 478999999999998 34 3899999999999999853 8999999999999999999983 689999999999999
Q ss_pred CCCCCcC--CCCCCCCCEEEccCCccCCcc
Q 015448 96 KLRSMDD--VTSVVSLRALILNDNEIVSIC 123 (406)
Q Consensus 96 ~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~ 123 (406)
.|+.++. +..+++|++|+|++|.+...+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 9999873 888999999999999998665
No 128
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.32 E-value=3.5e-13 Score=130.66 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=119.0
Q ss_pred CCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCC--CC-CCCCCCCCcEEEecCCCCCC-CC-CCCCCCCCcEEEc
Q 015448 19 NSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTS--LE-GLKHCVNLKWLSLVQNKLQS-LK-GIEGLSKPTVLNV 92 (406)
Q Consensus 19 ~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~--l~-~l~~L~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 92 (406)
..++.|++++|.+.... .+..+++|++|+|++|.++. ++ .+..+++|++|+|++|.++. ++ .+..+++|++|+|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 67888888888887764 56678899999999998875 33 37788999999999998873 33 5777899999999
Q ss_pred CCC-CCCC--CcC-CCCCCCCCEEEccCC-ccCC--ccc-cCCCC-CCcEeeCC---------------CCCCCCCEEEc
Q 015448 93 GKN-KLRS--MDD-VTSVVSLRALILNDN-EIVS--ICK-LDQMK-ELNTLGMD---------------SYFFNLNNLNL 148 (406)
Q Consensus 93 s~N-~i~~--l~~-l~~l~~L~~L~Ls~N-~i~~--l~~-l~~L~-~L~~L~Ls---------------~~l~~L~~L~L 148 (406)
++| .++. ++. +..+++|++|+|++| .++. ++. +..++ +|++|+|+ ..+++|+.|+|
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 999 6774 443 667889999999999 8875 333 66777 88888886 35778888999
Q ss_pred CCCC-CCCchhHHHHHHhcCCCcccccCcCCC
Q 015448 149 QGNP-VAEYDKLAKKVKTLLPNLCIFNARPID 179 (406)
Q Consensus 149 s~N~-i~~~~~~~~~~~~~lp~L~~Ld~~~~~ 179 (406)
++|. ++..... .+..+++|+.|+...+.
T Consensus 230 ~~~~~l~~~~~~---~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 230 SDSVMLKNDCFQ---EFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTCTTCCGGGGG---GGGGCTTCCEEECTTCT
T ss_pred CCCCcCCHHHHH---HHhCCCCCCEeeCCCCC
Confidence 8888 5433221 24667888888776654
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.31 E-value=4e-13 Score=132.64 Aligned_cols=81 Identities=27% Similarity=0.333 Sum_probs=36.7
Q ss_pred CCccEEEeeCCCCCCCC------CCCCCC-CCcEEEccCCCCCCCC--CCCC-----CCCCcEEEecCCCCCCCC-C---
Q 015448 19 NSIKSLSLTHKALSDVS------CLTDFN-NLERLDLSSNNLTSLE--GLKH-----CVNLKWLSLVQNKLQSLK-G--- 80 (406)
Q Consensus 19 ~~L~~L~Ls~n~l~~i~------~l~~l~-~L~~L~Ls~N~l~~l~--~l~~-----L~~L~~L~Ls~N~l~~l~-~--- 80 (406)
.+|++|+|++|.|+.++ .+..++ +|++|+|++|.|+... .+.. +++|++|+|++|.|+..+ .
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 34555555555555442 233444 5555555555554432 1211 145555555555554332 1
Q ss_pred --CCCC-CCCcEEEcCCCCCCC
Q 015448 81 --IEGL-SKPTVLNVGKNKLRS 99 (406)
Q Consensus 81 --l~~l-~~L~~L~Ls~N~i~~ 99 (406)
+..+ ++|++|+|++|.|+.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCc
Confidence 2222 445555555555444
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=2.1e-11 Score=107.72 Aligned_cols=102 Identities=26% Similarity=0.344 Sum_probs=91.4
Q ss_pred CccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCCC--CCCCCCCcEEEcCC
Q 015448 20 SIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGK 94 (406)
Q Consensus 20 ~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~ 94 (406)
..+.|++++|.|+.+| .+ .++|++|+|++|.|+.+++ |..+++|++|+|++|.|+.++. |..+++|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3578999999999998 34 4899999999999999853 8999999999999999999983 78999999999999
Q ss_pred CCCCCCcC--CCCCCCCCEEEccCCccCCcc
Q 015448 95 NKLRSMDD--VTSVVSLRALILNDNEIVSIC 123 (406)
Q Consensus 95 N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~ 123 (406)
|.|+.++. +..+++|++|+|++|.++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999873 789999999999999988654
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=6.9e-15 Score=133.06 Aligned_cols=134 Identities=26% Similarity=0.365 Sum_probs=109.2
Q ss_pred CCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCC
Q 015448 16 CDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGK 94 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~ 94 (406)
..+++|++|+|++|.|+.++.+..+++|++|+|++|.|+.++. +..+++|++|+|++|.|+.+|.+..+++|++|+|++
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSN 124 (198)
T ss_dssp HHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESE
T ss_pred hcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCC
Confidence 4478999999999999999988899999999999999999876 455689999999999999998888899999999999
Q ss_pred CCCCCCc---CCCCCCCCCEEEccCCccCCccccC----CCC--CCcEeeCCCCCCCCCEEEcCCCCCCCch
Q 015448 95 NKLRSMD---DVTSVVSLRALILNDNEIVSICKLD----QMK--ELNTLGMDSYFFNLNNLNLQGNPVAEYD 157 (406)
Q Consensus 95 N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~l~----~L~--~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~ 157 (406)
|.|+.++ .+..+++|++|++++|.++....-. ... .+ ..+++|+.|+ +|+++...
T Consensus 125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~------~~l~~L~~Ld--~~~i~~~e 188 (198)
T 1ds9_A 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV------KRLPNLKKLD--GMPVDVDE 188 (198)
T ss_dssp EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH------HHCSSCSEEC--CGGGTTTT
T ss_pred CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH------HhCCCcEEEC--CcccCHHH
Confidence 9999865 4789999999999999986652110 000 00 2456777776 77776654
No 132
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=2.6e-11 Score=118.47 Aligned_cols=102 Identities=27% Similarity=0.291 Sum_probs=57.4
Q ss_pred EEccCC-CCCCCCCCCCCCCCcEEEecC-CCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCcc
Q 015448 46 LDLSSN-NLTSLEGLKHCVNLKWLSLVQ-NKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEI 119 (406)
Q Consensus 46 L~Ls~N-~l~~l~~l~~L~~L~~L~Ls~-N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i 119 (406)
++++++ .|+.+|.|..+.+|++|+|++ |.|+.++ .|..|++|+.|+|++|.|+.++ .|..+++|++|+|++|.|
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 455554 555555555555566666654 6666555 2556666666666666666543 245666666666666666
Q ss_pred CCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchh
Q 015448 120 VSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDK 158 (406)
Q Consensus 120 ~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~ 158 (406)
+.++.-. +. .+ .|+.|+|.+|++.+.+.
T Consensus 93 ~~~~~~~-~~---------~~-~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 93 ESLSWKT-VQ---------GL-SLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCCSTT-TC---------SC-CCCEEECCSSCCCCCGG
T ss_pred ceeCHHH-cc---------cC-CceEEEeeCCCccCCCc
Confidence 6555310 00 11 26667777777766554
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=5.3e-12 Score=122.90 Aligned_cols=151 Identities=18% Similarity=0.223 Sum_probs=93.7
Q ss_pred CCCccEEEeeCCCCC--------------------CCC--CCCC--------CCCCcEEEccCCCCCCCC--CCCCCCCC
Q 015448 18 PNSIKSLSLTHKALS--------------------DVS--CLTD--------FNNLERLDLSSNNLTSLE--GLKHCVNL 65 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~--------------------~i~--~l~~--------l~~L~~L~Ls~N~l~~l~--~l~~L~~L 65 (406)
+++|+.|+|++|.|. .++ .|.. |++|+.|+|.+ .++.++ .|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 567778888877777 222 4556 78888888877 777765 37788888
Q ss_pred cEEEecCCCCCCCC--CCCC------------------------------------------------------------
Q 015448 66 KWLSLVQNKLQSLK--GIEG------------------------------------------------------------ 83 (406)
Q Consensus 66 ~~L~Ls~N~l~~l~--~l~~------------------------------------------------------------ 83 (406)
+.|+|++|.+..|+ .|..
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 88888877765443 1222
Q ss_pred ------------------CCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCc-EeeCC---
Q 015448 84 ------------------LSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELN-TLGMD--- 137 (406)
Q Consensus 84 ------------------l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~-~L~Ls--- 137 (406)
+++|+.|+|++|.++.++ .|..+.+|+.|+|.+| ++.++. |..|.+|+ .|.|+
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l 285 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASV 285 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTC
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccc
Confidence 456666666666666655 3556666666666665 555543 55666666 66554
Q ss_pred --------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccc
Q 015448 138 --------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF 173 (406)
Q Consensus 138 --------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~L 173 (406)
..|++|+.|+|++|.+..++... +..|++|+.+
T Consensus 286 ~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~a---F~~~~~L~~l 326 (329)
T 3sb4_A 286 TAIEFGAFMGCDNLRYVLATGDKITTLGDEL---FGNGVPSKLI 326 (329)
T ss_dssp CEECTTTTTTCTTEEEEEECSSCCCEECTTT---TCTTCCCCEE
T ss_pred eEEchhhhhCCccCCEEEeCCCccCccchhh---hcCCcchhhh
Confidence 45566666666666666655432 4555555544
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.26 E-value=2.1e-12 Score=127.44 Aligned_cols=176 Identities=22% Similarity=0.171 Sum_probs=130.2
Q ss_pred CccccccccCCCC------CCCCC-CccEEEeeCCCCCCCC--CCCC-----CCCCcEEEccCCCCCCCCC------CCC
Q 015448 2 TRLSTQQILKDNK------TCDPN-SIKSLSLTHKALSDVS--CLTD-----FNNLERLDLSSNNLTSLEG------LKH 61 (406)
Q Consensus 2 ~~Ls~n~i~~~~~------~~~~~-~L~~L~Ls~n~l~~i~--~l~~-----l~~L~~L~Ls~N~l~~l~~------l~~ 61 (406)
++|+.|.+..... +..++ +|++|+|++|.|+... .+.. +++|++|+|++|.|+.... +..
T Consensus 27 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 106 (362)
T 3goz_A 27 LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAA 106 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred EEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHh
Confidence 3566777766543 23455 8999999999998864 3333 2899999999999987642 445
Q ss_pred C-CCCcEEEecCCCCCCCCC------CCC-CCCCcEEEcCCCCCCCC-----c-CCCCCC-CCCEEEccCCccCCccc--
Q 015448 62 C-VNLKWLSLVQNKLQSLKG------IEG-LSKPTVLNVGKNKLRSM-----D-DVTSVV-SLRALILNDNEIVSICK-- 124 (406)
Q Consensus 62 L-~~L~~L~Ls~N~l~~l~~------l~~-l~~L~~L~Ls~N~i~~l-----~-~l~~l~-~L~~L~Ls~N~i~~l~~-- 124 (406)
+ ++|++|+|++|.|+..+. +.. .++|++|+|++|.|+.. + .+..++ +|++|+|++|.|+....
T Consensus 107 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 186 (362)
T 3goz_A 107 IPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAE 186 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHH
Confidence 5 899999999999987662 444 36999999999999853 2 244555 99999999999987652
Q ss_pred ----cCCC-CCCcEeeCC-----------------CCCCCCCEEEcCCCCCCCchhHH-HHHHhcCCCcccccCcC
Q 015448 125 ----LDQM-KELNTLGMD-----------------SYFFNLNNLNLQGNPVAEYDKLA-KKVKTLLPNLCIFNARP 177 (406)
Q Consensus 125 ----l~~L-~~L~~L~Ls-----------------~~l~~L~~L~Ls~N~i~~~~~~~-~~~~~~lp~L~~Ld~~~ 177 (406)
+..+ ++|++|+|+ ...++|+.|+|++|.|...+... ..++..+++|+.|+...
T Consensus 187 l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 187 LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 4445 589999998 12468999999999998875422 23446778888776543
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.15 E-value=3.8e-12 Score=128.56 Aligned_cols=115 Identities=16% Similarity=0.073 Sum_probs=56.2
Q ss_pred CCCCcEEEecCCCCCC-----CC-CCCCCCCCcEEEcCCCCCCCC-----c-CC-CCCCCCCEEEccCCccCCcc-----
Q 015448 62 CVNLKWLSLVQNKLQS-----LK-GIEGLSKPTVLNVGKNKLRSM-----D-DV-TSVVSLRALILNDNEIVSIC----- 123 (406)
Q Consensus 62 L~~L~~L~Ls~N~l~~-----l~-~l~~l~~L~~L~Ls~N~i~~l-----~-~l-~~l~~L~~L~Ls~N~i~~l~----- 123 (406)
+++|++|+|++|.|+. ++ .+..+++|++|+|++|.|+.. . .+ ...++|++|+|++|.++...
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 4555555555555543 23 233455555555555555431 1 01 12245666666666555431
Q ss_pred -ccCCCCCCcEeeCC-----------------CCCCCCCEEEcCCCCCCCchhH-HHHHHhcCCCcccccCc
Q 015448 124 -KLDQMKELNTLGMD-----------------SYFFNLNNLNLQGNPVAEYDKL-AKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 124 -~l~~L~~L~~L~Ls-----------------~~l~~L~~L~Ls~N~i~~~~~~-~~~~~~~lp~L~~Ld~~ 176 (406)
.+..+++|++|+|+ ..+++|++|+|++|.++..... ....+..+++|+.|+..
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence 13445666666665 1145666677776666542110 01123456666655543
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.14 E-value=1.2e-11 Score=124.86 Aligned_cols=162 Identities=19% Similarity=0.173 Sum_probs=116.0
Q ss_pred CCCCccEEEeeCCCCCCC-----C-CCCCCCCCcEEEccCCCCCCCC------CCCCCC-CCcEEEecCCCCCC-----C
Q 015448 17 DPNSIKSLSLTHKALSDV-----S-CLTDFNNLERLDLSSNNLTSLE------GLKHCV-NLKWLSLVQNKLQS-----L 78 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~l~~i-----~-~l~~l~~L~~L~Ls~N~l~~l~------~l~~L~-~L~~L~Ls~N~l~~-----l 78 (406)
.+++|++|+|++|.++.. + .+..+++|++|+|++|.|+... .+.... +|++|+|++|.|+. +
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 467899999999998853 2 5677889999999999887531 222222 79999999999884 3
Q ss_pred C-CCCCCCCCcEEEcCCCCCCCC--c----C-CCCCCCCCEEEccCCccCCcc------ccCCCCCCcEeeCC-------
Q 015448 79 K-GIEGLSKPTVLNVGKNKLRSM--D----D-VTSVVSLRALILNDNEIVSIC------KLDQMKELNTLGMD------- 137 (406)
Q Consensus 79 ~-~l~~l~~L~~L~Ls~N~i~~l--~----~-l~~l~~L~~L~Ls~N~i~~l~------~l~~L~~L~~L~Ls------- 137 (406)
+ .+..+++|++|+|++|.|+.. . . ...+++|++|+|++|.++... .+..+++|++|+|+
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 4 478889999999999988652 1 1 234567999999999887632 25667888888888
Q ss_pred ----------CCCCCCCEEEcCCCCCCCchhH-HHHHHhcCCCcccccCcCC
Q 015448 138 ----------SYFFNLNNLNLQGNPVAEYDKL-AKKVKTLLPNLCIFNARPI 178 (406)
Q Consensus 138 ----------~~l~~L~~L~Ls~N~i~~~~~~-~~~~~~~lp~L~~Ld~~~~ 178 (406)
..+++|+.|+|++|.+...... ....+..+++|+.|+....
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 1356888899998888765311 1123456788887776544
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=1.9e-10 Score=112.27 Aligned_cols=103 Identities=27% Similarity=0.360 Sum_probs=90.2
Q ss_pred cEEEeeCC-CCCCCCCCCCCCCCcEEEccC-CCCCCCCC--CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCC
Q 015448 22 KSLSLTHK-ALSDVSCLTDFNNLERLDLSS-NNLTSLEG--LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKN 95 (406)
Q Consensus 22 ~~L~Ls~n-~l~~i~~l~~l~~L~~L~Ls~-N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N 95 (406)
..++++++ .|+.+|.|..+.+|++|+|++ |.|+.++. |..|++|++|+|++|.|+.++ .|..|++|+.|+|++|
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 45799998 999998888999999999996 99999874 999999999999999999887 3789999999999999
Q ss_pred CCCCCcC--CCCCCCCCEEEccCCccCCcccc
Q 015448 96 KLRSMDD--VTSVVSLRALILNDNEIVSICKL 125 (406)
Q Consensus 96 ~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~l 125 (406)
.|+.+|. +..+. |+.|+|++|.+...+.+
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence 9999873 44444 99999999999876553
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=1.6e-09 Score=105.30 Aligned_cols=84 Identities=12% Similarity=0.059 Sum_probs=69.4
Q ss_pred CCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCC-EEEccCCccCCccc--cCCCCCCcEe
Q 015448 62 CVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLR-ALILNDNEIVSICK--LDQMKELNTL 134 (406)
Q Consensus 62 L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~-~L~Ls~N~i~~l~~--l~~L~~L~~L 134 (406)
+++|+.|+|++|.++.|+ .|..|.+|+.|+|.+| ++.++ .|..+.+|+ .|.+.+ .++.++. |..|++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999999999988 4889999999999988 77776 488899999 999988 7777763 8889999999
Q ss_pred eCC------------CCCCCCCEEE
Q 015448 135 GMD------------SYFFNLNNLN 147 (406)
Q Consensus 135 ~Ls------------~~l~~L~~L~ 147 (406)
++. ..+++|+.|+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 884 4566777665
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.96 E-value=1.6e-11 Score=122.28 Aligned_cols=120 Identities=21% Similarity=0.253 Sum_probs=83.0
Q ss_pred CCCccEEEeeCCCCCCCC------CCC-CCCCCcEEEccCCCCCCCC--CC-CCCCCCcEEEecCCCCCCCC--C----C
Q 015448 18 PNSIKSLSLTHKALSDVS------CLT-DFNNLERLDLSSNNLTSLE--GL-KHCVNLKWLSLVQNKLQSLK--G----I 81 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i~------~l~-~l~~L~~L~Ls~N~l~~l~--~l-~~L~~L~~L~Ls~N~l~~l~--~----l 81 (406)
++.|+.|+|++|.|+... .+. ..++|++|+|++|.|+... .+ ..+.+|+.|+|++|.|+... . +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 357889999999987643 222 3468999999999887532 22 34568899999999887533 1 2
Q ss_pred -CCCCCCcEEEcCCCCCCCC-----c-CCCCCCCCCEEEccCCccCCcc------ccCCCCCCcEeeCC
Q 015448 82 -EGLSKPTVLNVGKNKLRSM-----D-DVTSVVSLRALILNDNEIVSIC------KLDQMKELNTLGMD 137 (406)
Q Consensus 82 -~~l~~L~~L~Ls~N~i~~l-----~-~l~~l~~L~~L~Ls~N~i~~l~------~l~~L~~L~~L~Ls 137 (406)
...+.|++|+|++|.|+.. . .+..+++|++|+|++|.|+... .+..+++|++|+|+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 3567899999999988762 2 3467788999999999887532 14444445555544
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.78 E-value=3.1e-09 Score=110.52 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=98.3
Q ss_pred CCCccEEEeeCCCCCCCC------CCCCCCCCcEEEccCCCCCCCC-----C-CCCCCCCcEEEecCCCCCCCC------
Q 015448 18 PNSIKSLSLTHKALSDVS------CLTDFNNLERLDLSSNNLTSLE-----G-LKHCVNLKWLSLVQNKLQSLK------ 79 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i~------~l~~l~~L~~L~Ls~N~l~~l~-----~-l~~L~~L~~L~Ls~N~l~~l~------ 79 (406)
+++|++|+|++|.+++.. .+..+++|++|+|++|.++.+. . +..+++|+.|+|++|.+..++
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 466777777777655432 2235566666666666665331 1 345566666666666544332
Q ss_pred ----------------------CCCCCCCCcEEEcCCCCCCCCcC-CCCCCCCCEEEccCCccCCccc---cCCCCCCcE
Q 015448 80 ----------------------GIEGLSKPTVLNVGKNKLRSMDD-VTSVVSLRALILNDNEIVSICK---LDQMKELNT 133 (406)
Q Consensus 80 ----------------------~l~~l~~L~~L~Ls~N~i~~l~~-l~~l~~L~~L~Ls~N~i~~l~~---l~~L~~L~~ 133 (406)
.+..+++|+.|+++++....++. +..+++|++|+|++|.++.... +..+++|++
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 24555666666666655555553 4567889999999988654321 577888999
Q ss_pred eeCC------------CCCCCCCEEEcC-----------CCCCCCchhHHHHHHhcCCCcccccC
Q 015448 134 LGMD------------SYFFNLNNLNLQ-----------GNPVAEYDKLAKKVKTLLPNLCIFNA 175 (406)
Q Consensus 134 L~Ls------------~~l~~L~~L~Ls-----------~N~i~~~~~~~~~~~~~lp~L~~Ld~ 175 (406)
|+|+ ..+++|++|+|+ .|.++..... .+...+++|+.|+.
T Consensus 323 L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~--~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI--ALAQGCQELEYMAV 385 (592)
T ss_dssp EEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH--HHHHHCTTCSEEEE
T ss_pred EeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH--HHHhhCccCeEEEe
Confidence 8885 467889999999 3555543221 23456888887765
No 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.74 E-value=1.6e-08 Score=96.25 Aligned_cols=112 Identities=24% Similarity=0.389 Sum_probs=86.2
Q ss_pred CCCCCCCcE--EEecCCCCCCCCC-----CCCCCCCcEEEcCCCCCCCCcCCC----CCCCCCEEEccCCccCCccccCC
Q 015448 59 LKHCVNLKW--LSLVQNKLQSLKG-----IEGLSKPTVLNVGKNKLRSMDDVT----SVVSLRALILNDNEIVSICKLDQ 127 (406)
Q Consensus 59 l~~L~~L~~--L~Ls~N~l~~l~~-----l~~l~~L~~L~Ls~N~i~~l~~l~----~l~~L~~L~Ls~N~i~~l~~l~~ 127 (406)
|...+.|.. ++++.|.+..++. ...+++|+.|+|++|.|+.++.+. .+++|+.|+|++|.|+.+..+..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 344444554 5666675544442 245789999999999999986543 78999999999999998866665
Q ss_pred CCCCcEeeCCCCCCCCCEEEcCCCCCCC----chhHHHHHHhcCCCcccccCcCCCh
Q 015448 128 MKELNTLGMDSYFFNLNNLNLQGNPVAE----YDKLAKKVKTLLPNLCIFNARPIDR 180 (406)
Q Consensus 128 L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~----~~~~~~~~~~~lp~L~~Ld~~~~~~ 180 (406)
+. .+ +|+.|+|++|+++. .+.|+..++..+|+|+.||+.+++.
T Consensus 217 l~---------~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~p 263 (267)
T 3rw6_A 217 IK---------GL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPP 263 (267)
T ss_dssp GT---------TS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCCC
T ss_pred cc---------cC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCCC
Confidence 54 34 89999999999985 3567778899999999999998865
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.71 E-value=4.9e-09 Score=109.07 Aligned_cols=156 Identities=13% Similarity=0.192 Sum_probs=107.7
Q ss_pred CCccEEEeeCCC-CCC--CC-CCCCCCCCcEEEccCCCCCCCC------CCCCCCCCcEEEecCCCCCCCC------CCC
Q 015448 19 NSIKSLSLTHKA-LSD--VS-CLTDFNNLERLDLSSNNLTSLE------GLKHCVNLKWLSLVQNKLQSLK------GIE 82 (406)
Q Consensus 19 ~~L~~L~Ls~n~-l~~--i~-~l~~l~~L~~L~Ls~N~l~~l~------~l~~L~~L~~L~Ls~N~l~~l~------~l~ 82 (406)
.+|++|+|++|. ++. +. .+..+++|++|+|++|.++... .+..+++|++|+|++|.++.+. .+.
T Consensus 138 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 349999999987 221 12 2347899999999999886542 1356899999999999997433 146
Q ss_pred CCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccC-----CccccCCCCCCcEeeCC-----------CCCCCCCE
Q 015448 83 GLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIV-----SICKLDQMKELNTLGMD-----------SYFFNLNN 145 (406)
Q Consensus 83 ~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~-----~l~~l~~L~~L~~L~Ls-----------~~l~~L~~ 145 (406)
.+++|+.|+|++|.+..++ .+..+++|+.|+++.+... ....+..+++|+.|+++ ..+++|++
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence 7899999999999988876 3667788888888753221 11235566677777665 34667888
Q ss_pred EEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448 146 LNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR 176 (406)
Q Consensus 146 L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~ 176 (406)
|+|++|.+..... ..++..+++|+.|+..
T Consensus 298 L~Ls~~~l~~~~~--~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 298 LDLLYALLETEDH--CTLIQKCPNLEVLETR 326 (592)
T ss_dssp EEETTCCCCHHHH--HHHHTTCTTCCEEEEE
T ss_pred EecCCCcCCHHHH--HHHHHhCcCCCEEecc
Confidence 8888777544332 1234566666666554
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.68 E-value=7.4e-08 Score=96.72 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=102.0
Q ss_pred CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCc
Q 015448 15 TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPT 88 (406)
Q Consensus 15 ~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~ 88 (406)
+..+.+|+.|+|.+|.++.++ +|. +.+|+.+.|..+ ++.++ .|.+|.+|+.|.|..| ++.|+ .|.. .+|+
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGIT 251 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCS
T ss_pred hhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCcc
Confidence 455788999999999988886 555 678888888744 66664 4888888888888764 56665 3555 5777
Q ss_pred EEEcCCCCCCCCc--CCCCCCCCCEEEccCCccC-----Ccc--ccCCCCCCcEeeCC-----------CCCCCCCEEEc
Q 015448 89 VLNVGKNKLRSMD--DVTSVVSLRALILNDNEIV-----SIC--KLDQMKELNTLGMD-----------SYFFNLNNLNL 148 (406)
Q Consensus 89 ~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~-----~l~--~l~~L~~L~~L~Ls-----------~~l~~L~~L~L 148 (406)
.+.| .+.++.++ .|..+++|+.|.+.+|.+. .++ .|..|++|+.|.|. ..|++|+.|.|
T Consensus 252 ~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 252 TVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEE
T ss_pred EEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEE
Confidence 7777 34455554 4667777777777776654 333 26677777777765 45677777777
Q ss_pred CCCCCCCchhHHHHHHhcCCCcccccC
Q 015448 149 QGNPVAEYDKLAKKVKTLLPNLCIFNA 175 (406)
Q Consensus 149 s~N~i~~~~~~~~~~~~~lp~L~~Ld~ 175 (406)
..| +..+.... +..| +|+.|+.
T Consensus 331 p~~-l~~I~~~a---F~~~-~L~~l~l 352 (401)
T 4fdw_A 331 PAN-VTQINFSA---FNNT-GIKEVKV 352 (401)
T ss_dssp CTT-CCEECTTS---SSSS-CCCEEEE
T ss_pred Ccc-ccEEcHHh---CCCC-CCCEEEE
Confidence 544 55554332 4555 6665543
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=8.7e-08 Score=96.22 Aligned_cols=147 Identities=12% Similarity=0.169 Sum_probs=117.5
Q ss_pred CCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEc
Q 015448 19 NSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNV 92 (406)
Q Consensus 19 ~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L 92 (406)
.+|+.+.|.. .+..++ +|..|.+|+.|+|+.|.++.++. |. +.+|+.+.|..+ +..|+ .|..|++|+.|.|
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 4699999986 777775 89999999999999999998864 55 689999999844 88887 5899999999999
Q ss_pred CCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC-----------------CCCCCCCEEEcCCC
Q 015448 93 GKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD-----------------SYFFNLNNLNLQGN 151 (406)
Q Consensus 93 s~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls-----------------~~l~~L~~L~Ls~N 151 (406)
..| ++.++ .|.. .+|+.+.| .+.++.++. |..|++|+.|.+. ..|++|+.|.|. +
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~ 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E 309 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T
T ss_pred CCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C
Confidence 875 66665 3555 78999999 456777753 8889999998764 567899999999 4
Q ss_pred CCCCchhHHHHHHhcCCCcccccC
Q 015448 152 PVAEYDKLAKKVKTLLPNLCIFNA 175 (406)
Q Consensus 152 ~i~~~~~~~~~~~~~lp~L~~Ld~ 175 (406)
.+..+.... +..|++|+.+..
T Consensus 310 ~i~~I~~~a---F~~c~~L~~l~l 330 (401)
T 4fdw_A 310 SIRILGQGL---LGGNRKVTQLTI 330 (401)
T ss_dssp TCCEECTTT---TTTCCSCCEEEE
T ss_pred ceEEEhhhh---hcCCCCccEEEE
Confidence 577776543 677888887765
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.66 E-value=1.9e-09 Score=112.17 Aligned_cols=100 Identities=24% Similarity=0.335 Sum_probs=66.4
Q ss_pred CCCccEEEeeCCCCCCCC--CCC-CCCCCcEEEccCC-CCCC--CCC-CCCCCCCcEEEecCCCCCC-----CCC-CCCC
Q 015448 18 PNSIKSLSLTHKALSDVS--CLT-DFNNLERLDLSSN-NLTS--LEG-LKHCVNLKWLSLVQNKLQS-----LKG-IEGL 84 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i~--~l~-~l~~L~~L~Ls~N-~l~~--l~~-l~~L~~L~~L~Ls~N~l~~-----l~~-l~~l 84 (406)
+++|++|+|++|.+++.. .+. .+++|++|+|++| .++. ++. +..+++|++|+|++|.++. ++. ...+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 567888888888776542 332 5778888888887 4544 333 3367888888888887664 222 3467
Q ss_pred CCCcEEEcCCCC--CCC--CcC-CCCCCCCCEEEccCC
Q 015448 85 SKPTVLNVGKNK--LRS--MDD-VTSVVSLRALILNDN 117 (406)
Q Consensus 85 ~~L~~L~Ls~N~--i~~--l~~-l~~l~~L~~L~Ls~N 117 (406)
++|+.|+|++|. +.. ++. +..+++|++|+|++|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 788888888886 211 111 234678888888877
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.66 E-value=8e-10 Score=109.99 Aligned_cols=133 Identities=20% Similarity=0.190 Sum_probs=101.4
Q ss_pred CCCccEEEeeCCCCCCCC---CCCCCCCCcEEEccCCCCCCCC--C----C-CCCCCCcEEEecCCCCCCC-----C-CC
Q 015448 18 PNSIKSLSLTHKALSDVS---CLTDFNNLERLDLSSNNLTSLE--G----L-KHCVNLKWLSLVQNKLQSL-----K-GI 81 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i~---~l~~l~~L~~L~Ls~N~l~~l~--~----l-~~L~~L~~L~Ls~N~l~~l-----~-~l 81 (406)
+.+|++|+|++|.|++.. .+..+++|++|+|++|.|+... . + ...++|++|+|++|.|+.. + .+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 468999999999997642 2335678999999999998652 1 2 3578999999999999752 2 35
Q ss_pred CCCCCCcEEEcCCCCCCCC------cCCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCC
Q 015448 82 EGLSKPTVLNVGKNKLRSM------DDVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPV 153 (406)
Q Consensus 82 ~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i 153 (406)
..+++|++|+|++|.|+.. ..+..+++|+.|+|++|.|+.... +.. .| ..+++|++|+|++|+|
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~--~L------~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR--AA------REHPSLELLHLYFNEL 251 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH--HH------HHCSSCCEEECTTSSC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH--HH------HhCCCCCEEeccCCCC
Confidence 6788999999999999862 246677899999999999986432 111 01 1346899999999999
Q ss_pred CCchh
Q 015448 154 AEYDK 158 (406)
Q Consensus 154 ~~~~~ 158 (406)
.....
T Consensus 252 ~~~g~ 256 (372)
T 3un9_A 252 SSEGR 256 (372)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87654
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.41 E-value=2e-08 Score=104.33 Aligned_cols=159 Identities=14% Similarity=0.142 Sum_probs=94.9
Q ss_pred CCCCccEEEeeCCCCCCC--C-CCCCCCCCcEEEccC---------CCCCCC--CCC-CCCCCCcEEEecCCCCCCCC--
Q 015448 17 DPNSIKSLSLTHKALSDV--S-CLTDFNNLERLDLSS---------NNLTSL--EGL-KHCVNLKWLSLVQNKLQSLK-- 79 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~l~~i--~-~l~~l~~L~~L~Ls~---------N~l~~l--~~l-~~L~~L~~L~Ls~N~l~~l~-- 79 (406)
.+++|+.|++++| +++. + ....+++|++|+|+. +.++.. ..+ ..+++|+.|.++.|.++...
T Consensus 312 ~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~ 390 (594)
T 2p1m_B 312 QCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI 390 (594)
T ss_dssp TCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHH
T ss_pred cCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHH
Confidence 5678899999887 4432 2 223477888888843 333321 112 23677888877777776422
Q ss_pred CC-CCCCCCcEEEcC--C----CCCCCCcC-------CCCCCCCCEEEccCCccCCcc--ccCC-CCCCcEeeCC-----
Q 015448 80 GI-EGLSKPTVLNVG--K----NKLRSMDD-------VTSVVSLRALILNDNEIVSIC--KLDQ-MKELNTLGMD----- 137 (406)
Q Consensus 80 ~l-~~l~~L~~L~Ls--~----N~i~~l~~-------l~~l~~L~~L~Ls~N~i~~l~--~l~~-L~~L~~L~Ls----- 137 (406)
.+ ..+++|+.|+|+ + |.++..+. +..+++|+.|+|++ .++... .+.. +++|+.|+|+
T Consensus 391 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~ 469 (594)
T 2p1m_B 391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDS 469 (594)
T ss_dssp HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSS
T ss_pred HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCc
Confidence 23 246777888877 3 45554321 34567777777766 443321 2322 6677777776
Q ss_pred --------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCCC
Q 015448 138 --------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPID 179 (406)
Q Consensus 138 --------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~~ 179 (406)
..+++|+.|+|++|+++.... ..+...+++|+.|+...+.
T Consensus 470 ~~~~~~l~~~~~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 470 DLGMHHVLSGCDSLRKLEIRDCPFGDKAL--LANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCSCCHHHH--HHTGGGGGGSSEEEEESSC
T ss_pred HHHHHHHHhcCCCcCEEECcCCCCcHHHH--HHHHHhCCCCCEEeeeCCC
Confidence 346888888888888843322 1234567888877655443
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=1.4e-07 Score=93.55 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=82.2
Q ss_pred CCCccEEEeeCCCCCC----------CC-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC--CC--C
Q 015448 18 PNSIKSLSLTHKALSD----------VS-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK--GI--E 82 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~----------i~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~--~l--~ 82 (406)
+++|+.|.|..+.+.. +. .+..+|+|+.|.|++|.-..++.+. +++|+.|+|..|.+..-. .+ .
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHc
Confidence 4577777776543211 21 2345677777777776322333443 677777777777665211 22 3
Q ss_pred CCCCCcEEEcCC--CC------CCCCc-CC--CCCCCCCEEEccCCccCCcc--ccCCCCCCcEeeCCCCCCCCCEEEcC
Q 015448 83 GLSKPTVLNVGK--NK------LRSMD-DV--TSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDSYFFNLNNLNLQ 149 (406)
Q Consensus 83 ~l~~L~~L~Ls~--N~------i~~l~-~l--~~l~~L~~L~Ls~N~i~~l~--~l~~L~~L~~L~Ls~~l~~L~~L~Ls 149 (406)
.+++|+.|+|+. |. +..+. .+ ..+++|++|+|++|.+.... .+... ..+++|+.|+|+
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a---------~~~~~L~~LdLs 287 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES---------DILPQLETMDIS 287 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC---------SSGGGCSEEECC
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC---------ccCCCCCEEECC
Confidence 567777777642 11 11111 12 24677777777777765321 11111 246788999999
Q ss_pred CCCCCCchhHHH-HHHhcCCCcccccCc
Q 015448 150 GNPVAEYDKLAK-KVKTLLPNLCIFNAR 176 (406)
Q Consensus 150 ~N~i~~~~~~~~-~~~~~lp~L~~Ld~~ 176 (406)
.|.|.....-.. ..+..+++|+.|+..
T Consensus 288 ~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 288 AGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp SSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred CCCCChHHHHHHHhhcccCCcceEEECC
Confidence 998877532111 112456788877654
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.31 E-value=4.9e-08 Score=87.31 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=84.8
Q ss_pred CCCCCCCCcEEEccCC-CCCCC------CCCCCCCCCcEEEecCCCCCC-----CC-CCCCCCCCcEEEcCCCCCCCC--
Q 015448 36 CLTDFNNLERLDLSSN-NLTSL------EGLKHCVNLKWLSLVQNKLQS-----LK-GIEGLSKPTVLNVGKNKLRSM-- 100 (406)
Q Consensus 36 ~l~~l~~L~~L~Ls~N-~l~~l------~~l~~L~~L~~L~Ls~N~l~~-----l~-~l~~l~~L~~L~Ls~N~i~~l-- 100 (406)
.+...++|++|+|++| .|... ..+...++|++|+|++|.|.. +. .+...+.|++|+|++|.|+.-
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4667889999999999 88753 236678899999999999874 22 355667899999999999872
Q ss_pred ----cCCCCCCCCCEEEc--cCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCch
Q 015448 101 ----DDVTSVVSLRALIL--NDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYD 157 (406)
Q Consensus 101 ----~~l~~l~~L~~L~L--s~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~ 157 (406)
..+...++|++|+| ++|.|..-.. +.. .| ...++|++|+|++|.|....
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~--~L------~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN--ML------EKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH--HH------HHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH--HH------HhCCCcCEEeccCCCCChHH
Confidence 25677889999999 8899876431 111 11 13468999999999886544
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.31 E-value=3.2e-07 Score=90.98 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=97.7
Q ss_pred CCCCccEEEeeCCCCCC--C--------CCCCCCCCCcEEEccCCCCCC----------CCC-CCCCCCCcEEEecCCCC
Q 015448 17 DPNSIKSLSLTHKALSD--V--------SCLTDFNNLERLDLSSNNLTS----------LEG-LKHCVNLKWLSLVQNKL 75 (406)
Q Consensus 17 ~~~~L~~L~Ls~n~l~~--i--------~~l~~l~~L~~L~Ls~N~l~~----------l~~-l~~L~~L~~L~Ls~N~l 75 (406)
.+..++.|.+..+.+.. . .++..+++|+.|.+..+.+.. +.. +..+|+|+.|+|++|.-
T Consensus 105 ~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 105 KLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp TGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred CchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence 34568889888766541 1 134567899999997764321 212 45679999999998842
Q ss_pred CCCCCCCCCCCCcEEEcCCCCCCC--CcCC--CCCCCCCEEEccC--CccCCccccCCCCCCcEeeCCCCCCCCCEEEcC
Q 015448 76 QSLKGIEGLSKPTVLNVGKNKLRS--MDDV--TSVVSLRALILND--NEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQ 149 (406)
Q Consensus 76 ~~l~~l~~l~~L~~L~Ls~N~i~~--l~~l--~~l~~L~~L~Ls~--N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls 149 (406)
..++.+. +++|+.|+|..|.+.. +..+ ..+++|+.|+|+. |....-..+..+..+ .....+|+|+.|+|.
T Consensus 185 l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~---l~~~~~p~Lr~L~L~ 260 (362)
T 2ra8_A 185 LSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL---FSKDRFPNLKWLGIV 260 (362)
T ss_dssp CBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG---SCTTTCTTCCEEEEE
T ss_pred ceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH---HhcCCCCCcCEEeCC
Confidence 2455543 8899999999988765 2223 3689999999864 221111111111110 000257899999999
Q ss_pred CCCCCCchhHHHHHHhcCCCcccccCcC
Q 015448 150 GNPVAEYDKLAKKVKTLLPNLCIFNARP 177 (406)
Q Consensus 150 ~N~i~~~~~~~~~~~~~lp~L~~Ld~~~ 177 (406)
+|.+.........-...+|+|+.|+.+.
T Consensus 261 ~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 261 DAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp SCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred CCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 9998754321111112578999888754
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.31 E-value=3.6e-08 Score=88.20 Aligned_cols=115 Identities=12% Similarity=0.088 Sum_probs=76.1
Q ss_pred CCCCCCCcEEEecCC-CCCC-----CC-CCCCCCCCcEEEcCCCCCCCC------cCCCCCCCCCEEEccCCccCCcccc
Q 015448 59 LKHCVNLKWLSLVQN-KLQS-----LK-GIEGLSKPTVLNVGKNKLRSM------DDVTSVVSLRALILNDNEIVSICKL 125 (406)
Q Consensus 59 l~~L~~L~~L~Ls~N-~l~~-----l~-~l~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~L~Ls~N~i~~l~~l 125 (406)
+...++|++|+|++| .|.. +. .+...+.|++|+|++|.|..- ..+...++|++|+|++|.|..-...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 566788999999988 8874 22 366678899999999988762 1355567889999999988763210
Q ss_pred CCCCCCcEeeCCCCCCCCCEEEc--CCCCCCCchhH-HHHHHhcCCCcccccCcCCC
Q 015448 126 DQMKELNTLGMDSYFFNLNNLNL--QGNPVAEYDKL-AKKVKTLLPNLCIFNARPID 179 (406)
Q Consensus 126 ~~L~~L~~L~Ls~~l~~L~~L~L--s~N~i~~~~~~-~~~~~~~lp~L~~Ld~~~~~ 179 (406)
.-...| ...++|++|+| ++|.|...... ....+...++|+.|+.....
T Consensus 112 ~l~~~L------~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEAL------QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGG------GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHH------HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 000011 13457888888 78888765321 22345667888888766554
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=1e-06 Score=83.63 Aligned_cols=76 Identities=22% Similarity=0.360 Sum_probs=56.6
Q ss_pred EEccCCCCCCCCC-----CCCCCCCcEEEecCCCCCCCCCC----CCCCCCcEEEcCCCCCCCCcCCCCCC--CCCEEEc
Q 015448 46 LDLSSNNLTSLEG-----LKHCVNLKWLSLVQNKLQSLKGI----EGLSKPTVLNVGKNKLRSMDDVTSVV--SLRALIL 114 (406)
Q Consensus 46 L~Ls~N~l~~l~~-----l~~L~~L~~L~Ls~N~l~~l~~l----~~l~~L~~L~Ls~N~i~~l~~l~~l~--~L~~L~L 114 (406)
++++.|.+..++. ..++++|+.|+|++|.|+.++++ ..+++|+.|+|++|.|+++..+..+. +|+.|+|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L 227 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 227 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEEC
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEc
Confidence 4555554433322 13578999999999999987754 37899999999999999876544444 8999999
Q ss_pred cCCccCC
Q 015448 115 NDNEIVS 121 (406)
Q Consensus 115 s~N~i~~ 121 (406)
++|.+..
T Consensus 228 ~~Npl~~ 234 (267)
T 3rw6_A 228 DGNSLCD 234 (267)
T ss_dssp TTSTTGG
T ss_pred cCCcCcc
Confidence 9999864
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=1.7e-06 Score=76.98 Aligned_cols=100 Identities=20% Similarity=0.304 Sum_probs=65.2
Q ss_pred CCCcEEEecCCCCCCC--CCCCCCCCCcEEEcCCCC-CCC--CcCCCCC----CCCCEEEccCCc-cCCccccCCCCCCc
Q 015448 63 VNLKWLSLVQNKLQSL--KGIEGLSKPTVLNVGKNK-LRS--MDDVTSV----VSLRALILNDNE-IVSICKLDQMKELN 132 (406)
Q Consensus 63 ~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~-i~~--l~~l~~l----~~L~~L~Ls~N~-i~~l~~l~~L~~L~ 132 (406)
..|+.|+|++|.|+.. ..+..+++|+.|+|++|. |++ +..+..+ ++|++|+|++|. |++-. +..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L---- 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIAL---- 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHG----
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHH----
Confidence 4677888888777643 356778888888888885 655 3344443 478889998874 66532 2222
Q ss_pred EeeCCCCCCCCCEEEcCCCC-CCCchhHHHHHHhcCCCccc
Q 015448 133 TLGMDSYFFNLNNLNLQGNP-VAEYDKLAKKVKTLLPNLCI 172 (406)
Q Consensus 133 ~L~Ls~~l~~L~~L~Ls~N~-i~~~~~~~~~~~~~lp~L~~ 172 (406)
..+++|++|+|++++ |++.......+...+|++++
T Consensus 136 -----~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 136 -----HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp -----GGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred -----hcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 145688888888886 55544334446677888763
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.49 E-value=1.7e-05 Score=70.48 Aligned_cols=80 Identities=11% Similarity=0.221 Sum_probs=51.9
Q ss_pred CCcEEEccCCCCCCC--CCCCCCCCCcEEEecCCC-CCC--CCCCCCC----CCCcEEEcCCCC-CCC--CcCCCCCCCC
Q 015448 42 NLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQNK-LQS--LKGIEGL----SKPTVLNVGKNK-LRS--MDDVTSVVSL 109 (406)
Q Consensus 42 ~L~~L~Ls~N~l~~l--~~l~~L~~L~~L~Ls~N~-l~~--l~~l~~l----~~L~~L~Ls~N~-i~~--l~~l~~l~~L 109 (406)
.|+.|+|+++.|+.. ..+..|++|+.|+|++|. |++ +..+..+ ++|+.|+|++|. |++ +..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 577777777776643 346677777777777774 553 2223332 467888887774 665 4456677888
Q ss_pred CEEEccCCc-cCC
Q 015448 110 RALILNDNE-IVS 121 (406)
Q Consensus 110 ~~L~Ls~N~-i~~ 121 (406)
++|+|++|. |++
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 888888874 554
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.47 E-value=0.00039 Score=68.12 Aligned_cols=78 Identities=19% Similarity=0.350 Sum_probs=37.7
Q ss_pred CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCC
Q 015448 36 CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSL 109 (406)
Q Consensus 36 ~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L 109 (406)
.+..+..|+.+.+..+ ++.+. .|.++.+|+.+.+..+ +..++ .|..|.+|+.+.+.++.++.++ .+.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3444555555555433 33332 2445555555555332 44444 2455555555555555555443 24455555
Q ss_pred CEEEcc
Q 015448 110 RALILN 115 (406)
Q Consensus 110 ~~L~Ls 115 (406)
+.+.|.
T Consensus 313 ~~i~lp 318 (379)
T 4h09_A 313 SSVTLP 318 (379)
T ss_dssp CEEECC
T ss_pred CEEEcC
Confidence 555554
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.31 E-value=0.0012 Score=65.30 Aligned_cols=101 Identities=12% Similarity=0.271 Sum_probs=52.6
Q ss_pred CCCCCCCCcEEEccCCCCCCC--CCCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCC
Q 015448 36 CLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSL 109 (406)
Q Consensus 36 ~l~~l~~L~~L~Ls~N~l~~l--~~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L 109 (406)
+|..+..|+.+.+..+.. .+ ..|.++..|+.+.+. +.+..|+ .|.+|.+|+.+.|..+ ++.+. .|..+.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 345555556555543322 22 135556666666664 3455555 3556666666666543 44443 35556666
Q ss_pred CEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCC
Q 015448 110 RALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNP 152 (406)
Q Consensus 110 ~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~ 152 (406)
+.+.|..+ ++.+.. |. .|.+|+.+++.++.
T Consensus 337 ~~i~ip~s-v~~I~~~aF~------------~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFS------------NCTALNNIEYSGSR 368 (394)
T ss_dssp CEEEECTT-CCBCCGGGGT------------TCTTCCEEEESSCH
T ss_pred CEEEECcc-cCEEhHhHhh------------CCCCCCEEEECCce
Confidence 66666432 444432 33 45566677776653
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.30 E-value=0.0019 Score=63.19 Aligned_cols=98 Identities=13% Similarity=0.245 Sum_probs=67.8
Q ss_pred CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCC
Q 015448 36 CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSL 109 (406)
Q Consensus 36 ~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L 109 (406)
.+..+.+|+.+.+..+ +..+. .+..+..|+.+.+..+ ++.|. .+..+..|+.+.+..+ +..++ .+..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 4455667777777544 33332 4777888888888765 66666 4778888999888654 55554 47788899
Q ss_pred CEEEccCCccCCccc--cCCCCCCcEeeC
Q 015448 110 RALILNDNEIVSICK--LDQMKELNTLGM 136 (406)
Q Consensus 110 ~~L~Ls~N~i~~l~~--l~~L~~L~~L~L 136 (406)
+.+.+.++.++.++. |..|.+|+.+.|
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEc
Confidence 999998888887764 666655555444
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.28 E-value=0.00091 Score=66.06 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=84.7
Q ss_pred CCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCC-CCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCC
Q 015448 18 PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSL-EGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGK 94 (406)
Q Consensus 18 ~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l-~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~ 94 (406)
...|+.+.+..+ ++.+. .+..+..|+.+.+..+...-- ..|..+..|+.+.+..+.+.. ..+..+.+|+.+.+..
T Consensus 229 ~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 229 KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLD 306 (394)
T ss_dssp TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECT
T ss_pred cCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc-cccccccccccccccc
Confidence 456777777543 44443 677888888888876643311 236666777776665543211 1356666777777654
Q ss_pred CCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC-----------CCCCCCCEEEcCCCCCCCchhH
Q 015448 95 NKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD-----------SYFFNLNNLNLQGNPVAEYDKL 159 (406)
Q Consensus 95 N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls-----------~~l~~L~~L~Ls~N~i~~~~~~ 159 (406)
+ ++.++ .+..+.+|+.+.|..+ ++.+.. |..|.+|+.+.|. ..|++|+.++|..+ +..+. +
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~-~~~~~-~ 382 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKR-LEQYR-Y 382 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG-GGGGG-G
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECCC-CEEhh-h
Confidence 4 44443 3566667777777543 555542 5666666666655 46677788877643 22221 1
Q ss_pred HHHHHhcCCCccc
Q 015448 160 AKKVKTLLPNLCI 172 (406)
Q Consensus 160 ~~~~~~~lp~L~~ 172 (406)
.+..|++|+.
T Consensus 383 ---~F~~c~~L~~ 392 (394)
T 4fs7_A 383 ---DFEDTTKFKW 392 (394)
T ss_dssp ---GBCTTCEEEE
T ss_pred ---eecCCCCCcE
Confidence 2455666654
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.24 E-value=0.00086 Score=66.23 Aligned_cols=100 Identities=10% Similarity=0.265 Sum_probs=79.5
Q ss_pred CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcE
Q 015448 16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTV 89 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~ 89 (406)
..+..|+.+.+..+. ..+. +|..+.+|+.+.+. +.++.++ .|.+|.+|+.+.|..+ ++.|. .|.+|.+|+.
T Consensus 262 ~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 262 DSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred eecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 345778888886543 3343 78899999999996 5577665 4899999999999864 77777 5999999999
Q ss_pred EEcCCCCCCCCc--CCCCCCCCCEEEccCCcc
Q 015448 90 LNVGKNKLRSMD--DVTSVVSLRALILNDNEI 119 (406)
Q Consensus 90 L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i 119 (406)
+.|..+ ++.+. .|.++.+|+.+.+.++..
T Consensus 339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp EEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred EEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 999755 77775 588999999999998754
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.07 E-value=8.3e-05 Score=67.23 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=76.2
Q ss_pred CCCCCCCCcEEEccCC-CCCCC------CCCCCCCCCcEEEecCCCCCCCC------CCCCCCCCcEEEcCCCCCCCC--
Q 015448 36 CLTDFNNLERLDLSSN-NLTSL------EGLKHCVNLKWLSLVQNKLQSLK------GIEGLSKPTVLNVGKNKLRSM-- 100 (406)
Q Consensus 36 ~l~~l~~L~~L~Ls~N-~l~~l------~~l~~L~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~Ls~N~i~~l-- 100 (406)
.+..-+.|+.|+|++| .|..- ..+..-..|+.|+|++|.|.+.. .+..-+.|++|+|++|.|+.-
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3456678999999985 77653 24667788999999999998422 255567899999999999872
Q ss_pred ----cCCCCCCCCCEEEccCCccCCccc-----cCCCCCCcEeeCCCCCCCCCEEEcCCCCCC
Q 015448 101 ----DDVTSVVSLRALILNDNEIVSICK-----LDQMKELNTLGMDSYFFNLNNLNLQGNPVA 154 (406)
Q Consensus 101 ----~~l~~l~~L~~L~Ls~N~i~~l~~-----l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~ 154 (406)
..+.....|+.|+|++|....+.. +.. .| ..-+.|+.|+|+.|.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~--aL------~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM--AI------EENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH--HH------HHCSSCCEEECCCCCHH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH--HH------HhCCCcCeEeccCCCcc
Confidence 246777889999998764322211 111 01 13457888888877653
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.94 E-value=0.0058 Score=60.18 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=85.7
Q ss_pred CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC-----------------------CCCCCCCCcEEEe
Q 015448 16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE-----------------------GLKHCVNLKWLSL 70 (406)
Q Consensus 16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~-----------------------~l~~L~~L~~L~L 70 (406)
..+.+|+.+.+..+ ++.+. ++..+..|+.+.+..+...--. .+..+..|+.+.+
T Consensus 182 ~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~ 260 (394)
T 4fs7_A 182 SGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISI 260 (394)
T ss_dssp TTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEE
T ss_pred cCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEc
Confidence 34567888777655 44443 5666777776666544321111 2344455555555
Q ss_pred cCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC---------
Q 015448 71 VQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD--------- 137 (406)
Q Consensus 71 s~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls--------- 137 (406)
..+.. .+. .+..+..|+.+.+..+.+.. ..+..+.+|+.+.+..+ ++.++. +..+.+|+.+.|.
T Consensus 261 ~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~ 337 (394)
T 4fs7_A 261 QNNKL-RIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGKR 337 (394)
T ss_dssp CCTTC-EECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEECTT
T ss_pred CCCcc-eeeccccccccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEhHH
Confidence 44322 222 34455555555554433221 13556677777777654 555543 6677777777775
Q ss_pred --CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccC
Q 015448 138 --SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA 175 (406)
Q Consensus 138 --~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~ 175 (406)
..|.+|+.+.|..| +..+.... +..|++|+.++.
T Consensus 338 aF~~c~~L~~i~lp~~-l~~I~~~a---F~~C~~L~~i~l 373 (394)
T 4fs7_A 338 SFRGCTSLSNINFPLS-LRKIGANA---FQGCINLKKVEL 373 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTT---BTTCTTCCEEEE
T ss_pred hccCCCCCCEEEECcc-ccEehHHH---hhCCCCCCEEEE
Confidence 56677788877765 66655432 566777776654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.83 E-value=0.00036 Score=63.04 Aligned_cols=126 Identities=7% Similarity=-0.013 Sum_probs=82.5
Q ss_pred CCCCCCCcEEEecCC-CCCC-----CC-CCCCCCCCcEEEcCCCCCCCC-----c-CCCCCCCCCEEEccCCccCCcccc
Q 015448 59 LKHCVNLKWLSLVQN-KLQS-----LK-GIEGLSKPTVLNVGKNKLRSM-----D-DVTSVVSLRALILNDNEIVSICKL 125 (406)
Q Consensus 59 l~~L~~L~~L~Ls~N-~l~~-----l~-~l~~l~~L~~L~Ls~N~i~~l-----~-~l~~l~~L~~L~Ls~N~i~~l~~l 125 (406)
+.+-+.|++|+|++| .|.. +. .+..-+.|+.|+|++|.|.+. . .+...++|++|+|+.|.|..-...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 456688999999985 7763 22 467778999999999999863 1 355678999999999999764321
Q ss_pred CCCCCCcEeeCCCCCCCCCEEEcCCC---CCCCchh-HHHHHHhcCCCcccccCcCCChhhhhhhhhhh
Q 015448 126 DQMKELNTLGMDSYFFNLNNLNLQGN---PVAEYDK-LAKKVKTLLPNLCIFNARPIDRITKNEKDNIV 190 (406)
Q Consensus 126 ~~L~~L~~L~Ls~~l~~L~~L~Ls~N---~i~~~~~-~~~~~~~~lp~L~~Ld~~~~~~~~~~~~~~~l 190 (406)
.-...| ..-+.|+.|+|++| .+..... .....+...+.|..|+........+......+
T Consensus 117 ala~aL------~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~~~~ia~aL 179 (197)
T 1pgv_A 117 RLLRST------LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARHRVSEAL 179 (197)
T ss_dssp HHHHHT------TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHHHHHHHHHH
T ss_pred HHHHHH------hhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccHHHHHHHHH
Confidence 111111 13446899999865 4443321 22235567788888887765555444333333
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.29 E-value=0.0064 Score=50.78 Aligned_cols=52 Identities=27% Similarity=0.279 Sum_probs=27.9
Q ss_pred EEEccCCCCC--CCCCCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCC
Q 015448 45 RLDLSSNNLT--SLEGLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKL 97 (406)
Q Consensus 45 ~L~Ls~N~l~--~l~~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i 97 (406)
+++.+++.++ .+|.- -..+|++|+|++|.|+.|+ .|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4455555554 44420 1134566666666666665 255566666666666654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.09 E-value=0.0099 Score=49.63 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=37.9
Q ss_pred cEEEecCCCCC--CCC-CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCc
Q 015448 66 KWLSLVQNKLQ--SLK-GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSI 122 (406)
Q Consensus 66 ~~L~Ls~N~l~--~l~-~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l 122 (406)
..++.+++.++ .+| ++. ++|+.|+|++|.|+.++ .|..+++|+.|+|++|.+..-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 36677777777 677 332 35777888888887776 256677778888887776543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.06 E-value=34 Score=26.48 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=15.7
Q ss_pred CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecC
Q 015448 36 CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQ 72 (406)
Q Consensus 36 ~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~ 72 (406)
+|.+|.+|+.+.|..+ ++.+. .|.+|.+|+.+.|..
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 4445555555554432 22221 244444444444433
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.58 E-value=66 Score=24.76 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=15.5
Q ss_pred CCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccC
Q 015448 81 IEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILND 116 (406)
Q Consensus 81 l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~ 116 (406)
|.+|.+|+.+.|..+ ++.+. .|..+.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 444444444444432 23332 344555555555543
Done!