Your job contains 1 sequence.
>015450
MMQPAPGAVPPPPPPMAAHQYQYQQQAPPQQQPPPQPSPYMMMMPPQPQAQPPAMWATQA
AAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTG
QIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGD
LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF
CSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYG
QLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQ
WNAGYYGYAQGYENYGYAAAAPQDPSMYYGGYPGYGNYQQPQQPQQ
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015450
(406 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 1199 3.1e-125 2
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 1201 4.0e-122 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 1124 5.8e-114 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 1082 1.6e-109 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 695 5.3e-100 2
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 963 6.6e-97 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 656 6.9e-96 2
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 937 3.8e-94 1
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 922 1.5e-92 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 457 2.0e-67 2
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 447 6.1e-66 2
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 667 1.5e-65 1
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 493 4.2e-47 1
POMBASE|SPAC17A2.09c - symbol:csx1 "RNA-binding protein C... 449 1.9e-42 1
SGD|S000001128 - symbol:NAM8 "RNA binding protein, compon... 246 2.4e-42 2
CGD|CAL0004999 - symbol:orf19.6790 species:5476 "Candida ... 242 6.0e-40 2
UNIPROTKB|E2QV44 - symbol:TRNAU1AP "Uncharacterized prote... 396 9.4e-40 2
UNIPROTKB|Q9NX07 - symbol:TRNAU1AP "tRNA selenocysteine 1... 396 9.4e-40 2
UNIPROTKB|I3LHP4 - symbol:TRNAU1AP "Uncharacterized prote... 396 9.4e-40 2
UNIPROTKB|Q1RMJ7 - symbol:TRNAU1AP "tRNA selenocysteine 1... 395 1.2e-39 2
RGD|619995 - symbol:Secp43 "tRNA selenocysteine associate... 394 1.5e-39 2
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 242 1.6e-39 2
UNIPROTKB|E1BZH5 - symbol:TRNAU1AP "Uncharacterized prote... 393 1.9e-39 2
MGI|MGI:1919037 - symbol:Trnau1ap "tRNA selenocysteine 1 ... 391 3.2e-39 2
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 295 1.0e-36 2
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 379 5.1e-35 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 274 2.4e-34 2
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 369 5.8e-34 1
ZFIN|ZDB-GENE-040426-2386 - symbol:trnau1apl "tRNA seleno... 360 5.2e-33 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 359 6.7e-33 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 347 1.3e-31 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 346 1.6e-31 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 342 4.2e-31 1
DICTYBASE|DDB_G0291386 - symbol:DDB_G0291386 "RNA recogni... 342 4.2e-31 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 259 4.4e-31 2
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 339 8.8e-31 1
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 333 3.8e-30 1
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 333 3.8e-30 1
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 333 3.8e-30 1
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 333 3.8e-30 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 333 3.8e-30 1
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 333 3.8e-30 1
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 333 3.8e-30 1
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 333 3.8e-30 1
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 332 4.9e-30 1
FB|FBgn0031607 - symbol:CG15440 species:7227 "Drosophila ... 312 6.4e-28 1
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 309 1.3e-27 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 298 1.9e-26 1
ZFIN|ZDB-GENE-050522-502 - symbol:trnau1ap "tRNA selenocy... 296 3.2e-26 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 292 8.4e-26 1
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 223 1.3e-25 2
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 290 1.4e-25 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 290 1.4e-25 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 290 1.4e-25 1
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 290 1.4e-25 1
CGD|CAL0004726 - symbol:orf19.7368 species:5476 "Candida ... 224 2.8e-25 2
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 277 3.3e-24 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 277 3.3e-24 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 285 3.8e-24 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 271 1.4e-23 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 271 2.5e-23 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 276 3.3e-23 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 274 5.3e-23 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 273 6.8e-23 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 273 7.5e-23 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 264 7.8e-23 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 272 8.7e-23 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 272 8.7e-23 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 272 9.2e-23 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 205 9.9e-23 2
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 231 1.3e-22 2
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 264 1.4e-22 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 270 1.5e-22 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 269 1.7e-22 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 269 1.9e-22 1
FB|FBgn0085391 - symbol:CG34362 species:7227 "Drosophila ... 257 3.2e-22 2
CGD|CAL0001768 - symbol:orf19.1876 species:5476 "Candida ... 262 3.7e-22 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 265 4.9e-22 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 265 5.1e-22 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 265 5.1e-22 1
FB|FBgn0085383 - symbol:CG34354 species:7227 "Drosophila ... 262 6.4e-22 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 254 9.0e-22 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 262 9.2e-22 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 262 1.1e-21 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 262 1.1e-21 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 262 1.1e-21 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 262 1.1e-21 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 261 1.1e-21 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 262 1.1e-21 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 260 1.7e-21 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 252 1.7e-21 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 260 1.8e-21 1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 259 2.2e-21 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 258 2.8e-21 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 258 2.9e-21 1
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 253 3.0e-21 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 256 4.7e-21 1
POMBASE|SPBC1289.12 - symbol:usp109 "U1 snRNP-associated ... 247 4.9e-21 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 256 5.1e-21 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 255 6.0e-21 1
WARNING: Descriptions of 1102 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 1199 (427.1 bits), Expect = 3.1e-125, Sum P(2) = 3.1e-125
Identities = 231/313 (73%), Positives = 264/313 (84%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
EIRTLWIGDLQYWMDE +L CFAHTGE+V+ KVIRNKQTGQ+EGYGFIEF S A AERV
Sbjct: 60 EIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERV 119
Query: 140 LQTFNGTPMPN-GEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
LQTFN P+P+ +Q FRLNWAS +G+KRDD+PD+TIFVGDLAADVTDY+L ETFRA Y
Sbjct: 120 LQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASY 179
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258
PS KGAKVVIDR+TGRTKGYGFVRF DESEQ+RAMTEMNGV CSTRPMRIGPA +KK V+
Sbjct: 180 PSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVT 239
Query: 259 A---SYQNSQVA-QSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG 314
SYQ+S +D+DPNNTTVFVG LD+ VTD+HL+ +FSQYG++VHVKIPAGKRCG
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
Query: 315 FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYG-YAQGYE 373
FVQF+++SCAEEALRMLNG QLGG +RLSWGRSPSNKQ+ DP+Q+ YYG Y QG E
Sbjct: 300 FVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQSG-DPSQF---YYGGYGQGQE 355
Query: 374 NYGYAAAAPQDPS 386
YGY PQDP+
Sbjct: 356 QYGYTM--PQDPN 366
Score = 52 (23.4 bits), Expect = 3.1e-125, Sum P(2) = 3.1e-125
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 357 DPNQWNAGYYG--YAQGYENYGYAAAAP-QDP 385
DPN + GY G Y+ GY+ A P Q P
Sbjct: 364 DPNAYYGGYSGGGYSGGYQQTPQAGQQPPQQP 395
Score = 43 (20.2 bits), Expect = 2.7e-124, Sum P(2) = 2.7e-124
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 358 PNQWNAGYYGYAQGYENYGYAAAAPQDP 385
P NA YYG GY GY+ Q P
Sbjct: 362 PQDPNA-YYG---GYSGGGYSGGYQQTP 385
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
Identities = 227/315 (72%), Positives = 258/315 (81%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E+R+LWIGDLQYWMDE YL+TCF HTGE+V+ KVIRNKQTGQ EGYGF+EF S A AE +
Sbjct: 82 EVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETI 141
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
LQT+NGT MPN EQNFR+NWAS GAGE+RDD+ +HTIFVGDLAADVTDY+LQETF++ Y
Sbjct: 142 LQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQETFKSVYS 201
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS- 258
S +GAKVV DR+TGR+KGYGFV+F DESEQLRAMTEMNGV CSTRPMRIGPA NKK V
Sbjct: 202 SVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGT 261
Query: 259 ---ASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGF 315
A+YQN Q Q + DPNNTT+FVG LD V +EHLR++FS YG+LVHVKI AGKRCGF
Sbjct: 262 PQKATYQNPQATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGF 321
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG---YYGYAQGY 372
VQF R+ AE+AL LNGTQLGGQ+IRLSWGRSPS+KQ D QW YYGY QGY
Sbjct: 322 VQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSPSSKQT--DQTQWGGSGGAYYGYGQGY 379
Query: 373 ENYGYAAAAPQDPSM 387
E YGYA A QDP+M
Sbjct: 380 EAYGYAPPA-QDPNM 393
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
Identities = 215/315 (68%), Positives = 250/315 (79%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GEIR+LWIGDLQ WMDE YL F TGE A KVIRNKQ G EGYGFIEF++ A AER
Sbjct: 77 GEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAER 136
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRD-DTPDHTIFVGDLAADVTDYMLQETFRAR 197
LQT+NG PMP+ EQ FRLNWA GAGE+R + P+HT+FVGDLA DVTD+ML ETF+A
Sbjct: 137 NLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAV 196
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y S KGAKVV DR TGR+KGYGFVRF DESEQ+RAMTEMNG +CS+RPMR GPA NKK +
Sbjct: 197 YSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPL 256
Query: 258 S---ASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG 314
+ ASYQN+Q + DP NTT+FVG +D VT++ L+ +F Q+G+LVHVKIPAGKRCG
Sbjct: 257 TMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG 316
Query: 315 FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG--YYGYA-QG 371
FVQ+A+R+CAE+AL +LNGTQLGGQ+IRLSWGRSPSNKQ QPD Q+ G YYGY QG
Sbjct: 317 FVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPDQAQYGGGGGYYGYPPQG 376
Query: 372 YENYGYAAAAPQDPS 386
YE YGYA PQDP+
Sbjct: 377 YEAYGYAPP-PQDPN 390
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 1082 (385.9 bits), Expect = 1.6e-109, P = 1.6e-109
Identities = 210/316 (66%), Positives = 250/316 (79%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
++++LWIGDLQ WMDE Y+ + FA +GE + KVIRNK TGQ EGYGFIEF+S + AERV
Sbjct: 58 DVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERV 117
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT--PDHTIFVGDLAADVTDYMLQETFRAR 197
LQT+NG PMP+ EQ FRLNWA GAGEKR T PDHTIFVGDLA +VTDYML +TF+
Sbjct: 118 LQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNV 177
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y S KGAKVV+DR TGR+KGYGFVRF DE+EQ+RAMTEMNG +CSTRPMRIGPA NK +
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNAL 237
Query: 258 S---ASYQNSQVAQS-DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 313
A YQN+Q A + D+DPNNTT+FVG LD+ VTD+ L+ +F Q+G+L+HVKIP GKRC
Sbjct: 238 PMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRC 297
Query: 314 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG-YYGYA-QG 371
GFVQ+A+++ AE AL +LNGTQLGGQ+IRLSWGRSP NKQ+ D QWN G YYGY Q
Sbjct: 298 GFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSP-NKQS--DQAQWNGGGYYGYPPQP 354
Query: 372 YENYGYAAAAP-QDPS 386
YGYAA P QDP+
Sbjct: 355 QGGYGYAAQPPTQDPN 370
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 695 (249.7 bits), Expect = 5.3e-100, Sum P(2) = 5.3e-100
Identities = 130/183 (71%), Positives = 148/183 (80%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E+RTLWIGDLQYW+DE YL +CF+ TGE+V+VKVIRNK TGQ EGYGFIEFIS A AER
Sbjct: 22 EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERT 81
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
LQT+NGT MP E FRLNWASFG+G+K D PDH+IFVGDLA DVTDY+LQETFR Y
Sbjct: 82 LQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYS 141
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSA 259
S +GAKVV D TGR+KGYGFV+F +ESE+ RAM EMNG++CSTRPMRI AT KK V
Sbjct: 142 SVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGV 201
Query: 260 SYQ 262
Q
Sbjct: 202 QQQ 204
Score = 317 (116.6 bits), Expect = 5.3e-100, Sum P(2) = 5.3e-100
Identities = 66/140 (47%), Positives = 88/140 (62%)
Query: 250 PATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA 309
P T V+A Q + VA + D TT+ V NLD VT+E L++ FSQ G++++VKIPA
Sbjct: 212 PVTVPSAVAAPVQ-AYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPA 270
Query: 310 GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ--AQPDPNQWNAGYYG 367
K G+VQF R AEEA++ + G +G Q +R+SW ++P Q DPNQWN GYYG
Sbjct: 271 TKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGWVTQADPNQWN-GYYG 329
Query: 368 YAQGYENYGYAAAAPQDPSM 387
Y QGY+ Y Y A QDPS+
Sbjct: 330 YGQGYDAYAYGAT--QDPSV 347
Score = 145 (56.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 53/188 (28%), Positives = 89/188 (47%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
T+++GDL V + L F ++ KV+ +++TG+ +GYGF+ F + R +
Sbjct: 25 TLWIGDLQYWVDENYLTSCF-SQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ 83
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
NG + P G + AS+ + Q + D P+++ +FVG+L VTD L+E
Sbjct: 84 TYNG---TQMP---GTELTFRLNWASFGSGQ--KVDAGPDHS-IFVGDLAPDVTDYLLQE 134
Query: 295 LFS-QYGQLVHVKI---PA---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
F Y + K+ P+ K GFV+FA+ S A+ +NG + +R+S
Sbjct: 135 TFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAAT 194
Query: 348 SPSNKQAQ 355
N Q
Sbjct: 195 PKKNVGVQ 202
Score = 124 (48.7 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRM 330
T+++G+L V + +L FSQ G+LV VK+ K G F++F + AE L+
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 331 LNGTQLGGQNI--RLSWGRSPSNKQAQPDPN 359
NGTQ+ G + RL+W S ++ P+
Sbjct: 85 YNGTQMPGTELTFRLNWASFGSGQKVDAGPD 115
Score = 41 (19.5 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 354 AQPDPNQWNAGYYGYAQGYENYG 376
A DP+ + G YGY Q Y G
Sbjct: 341 ATQDPSVYAYGGYGYPQ-YPQQG 362
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
Identities = 196/323 (60%), Positives = 237/323 (73%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+++TLW+GDL +WMDETYL+TCF+HT EV +VKVIRNKQT Q EGYGF+EF+SR+ AE
Sbjct: 117 DVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEA 176
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETFRAR 197
LQ+F+G MPN EQ FRLNWASF GEKR ++ PD +IFVGDLA DV+D +L ETF R
Sbjct: 177 LQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGR 236
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
YPS KGAKVVID TGR+KGYGFVRFGDE+E+ RAMTEMNG FCS+R MR+G AT K+
Sbjct: 237 YPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAA 296
Query: 258 SASYQN-SQV-----------AQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
+ QN SQ + SD + NN+T+FVG LD+ VT+E L + FS +G++V V
Sbjct: 297 AYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSV 356
Query: 306 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDP-NQWNAG 364
KIP GK CGFVQFA+R AEEA+ LNGT +G +RLSWGRSP NKQ + D NQWN G
Sbjct: 357 KIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQWNGG 415
Query: 365 YYGYAQGYENYGYAAAAPQDPSM 387
Y QGY N GYA QD +M
Sbjct: 416 Y-SRGQGYNN-GYAN---QDSNM 433
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 656 (236.0 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
Identities = 120/190 (63%), Positives = 152/190 (80%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+++TLW+GDL +WMDETYL++CF+HTGEV +VKVIRNK T Q EGYGF+EF+SRA AE V
Sbjct: 106 DVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEV 165
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETFRAR 197
LQ ++G+ MPN +Q FR+NWASF GEKR ++ PD ++FVGDL+ DVTD +L ETF R
Sbjct: 166 LQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDR 225
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
YPS K AKVVID TGR+KGYGFVRFGDE+E+ RA+TEMNG +CS R MR+G AT K+ +
Sbjct: 226 YPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAI 285
Query: 258 SASYQNSQVA 267
+ Q+S A
Sbjct: 286 ANQQQHSSQA 295
Score = 317 (116.6 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
Identities = 65/114 (57%), Positives = 78/114 (68%)
Query: 267 AQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEE 326
+QSD + N T+FVG +D V DE LR+ FSQ+G++V VKIP GK CGFVQFADR AE+
Sbjct: 312 SQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAED 371
Query: 327 ALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQ-WNAGYYGYAQGYENYG-YA 378
A+ LNGT +G +RLSWGRSP NKQ + D Q WN GY GY N G YA
Sbjct: 372 AIESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQQWNGGY-SRGHGYNNGGGYA 423
Score = 152 (58.6 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 59/214 (27%), Positives = 95/214 (44%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
T++VGDL + + L F + KV+ ++LT +++GYGFV F + +
Sbjct: 109 TLWVGDLLHWMDETYLHSCF-SHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQ 167
Query: 235 EMNGVFC--STRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHL 292
+G S +P RI AS+ + ++ P+ +VFVG+L VTD L
Sbjct: 168 NYSGSVMPNSDQPFRIN--------WASFSTGEKRAVENGPD-LSVFVGDLSPDVTDVLL 218
Query: 293 RELFS-QYGQLVHVKIPA------GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345
E FS +Y + K+ K GFV+F D + AL +NG + +R+
Sbjct: 219 HETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGI 278
Query: 346 G---RSPSNKQAQPDPNQWNAGYYGYAQGYENYG 376
R+ +N+Q AG +G + G YG
Sbjct: 279 ATPKRAIANQQQHSSQAVILAGGHG-SNGSMGYG 311
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
Identities = 188/319 (58%), Positives = 228/319 (71%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCF--AHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
GE +T+W+GDLQ WMDE YLN+ F A E+V++KVIRNK G EGYGF+EF S A
Sbjct: 100 GENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVA 159
Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETF 194
++VLQ FNG PMPN +Q FRLNWASF GEKR ++ PD +IFVGDLA DV+D +L ETF
Sbjct: 160 DKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETF 219
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+YPS K AKVV+D TGR+KGYGFVRFGDE+E+ +AMTEMNGV CS+R MRIGPAT +
Sbjct: 220 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 279
Query: 255 KTVSASYQNSQV-----AQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA 309
KT Q + +S+ D NTT+FVG LDS VTDE L++ FS++G++V VKIP
Sbjct: 280 KTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV 339
Query: 310 GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD-PNQWNAGYYGY 368
GK CGFVQF +R AEEAL LNGT +G Q +RLSWGR+P+NKQ + NQW YYG
Sbjct: 340 GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYG- 398
Query: 369 AQGYENYGYAAAAPQDPSM 387
Q Y YGY P DP M
Sbjct: 399 GQFYNGYGYMVPQP-DPRM 416
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
Identities = 185/319 (57%), Positives = 228/319 (71%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGE--VVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
GE +T+W+GDL +WMDE YLN+ FA E +V+VKVIRNK G EGYGF+EF S A
Sbjct: 98 GENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVA 157
Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETF 194
++VL+ FNGT MPN +Q FRLNWASF GEKR ++ PD +IFVGDL+ DV+D +L ETF
Sbjct: 158 DKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETF 217
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+YPS K AKVV+D TGR+KGYGFVRFGDE+E+ +AMTEMNGV CS+R MRIGPAT +
Sbjct: 218 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 277
Query: 255 KTVSASYQ-----NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA 309
KT Q N + + + D NTT+FVG LDS VTDE L++ F+++G++V VKIP
Sbjct: 278 KTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV 337
Query: 310 GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD-PNQWNAGYYGY 368
GK CGFVQF +R AEEAL LNGT +G Q +RLSWGR+P+NKQ + NQW YYG
Sbjct: 338 GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYG- 396
Query: 369 AQGYENYGYAAAAPQDPSM 387
Q Y YGY P DP M
Sbjct: 397 GQFYNGYGYMVPQP-DPRM 414
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 457 (165.9 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 90/186 (48%), Positives = 129/186 (69%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+TLW+G+L+ WMDE ++ ++ GE V VKVIR++Q+G GY F+EF S A + L
Sbjct: 47 KTLWMGELEPWMDENFIKQIWSTVCGETVNVKVIRDRQSGNA-GYCFVEFPSSEAATKAL 105
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAG--EKRDDT-PDHTIFVGDLAADVTDYMLQETFRAR 197
NG+P+PN ++ F+LNWAS G G ++RD+ P+++IFVGDL +V +++L F+AR
Sbjct: 106 G-LNGSPVPNSQRVFKLNWAS-GGGLVDRRDERGPEYSIFVGDLGPEVNEFVLVSLFQAR 163
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+PS K AK++ D +TG+++GYGFVRF DES+Q RA+ EM GV+C RPMRI AT K
Sbjct: 164 FPSCKSAKIMTDAMTGQSRGYGFVRFTDESDQQRALVEMQGVYCGNRPMRISTATPKTRS 223
Query: 258 SASYQN 263
Y N
Sbjct: 224 HQQYGN 229
Score = 246 (91.7 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 47/99 (47%), Positives = 58/99 (58%)
Query: 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRML 331
DPNNTTVFVG L VT++ LR F +G + +VKIP GK CGFVQF R AE A+ +
Sbjct: 280 DPNNTTVFVGGLSGYVTEDELRSFFQGFGDITYVKIPPGKGCGFVQFVHRHAAEMAINQM 339
Query: 332 NGTQLGGQNIRLSWGRSPSNK------QAQPDPNQWNAG 364
G +G +RLSWGRS +N + P P W G
Sbjct: 340 QGYPIGNSRVRLSWGRSQNNSGVGTPYRPAPPPPHWGGG 378
Score = 44 (20.5 bits), Expect = 3.7e-46, Sum P(2) = 3.7e-46
Identities = 9/25 (36%), Positives = 9/25 (36%)
Query: 346 GRSPSNKQAQPDPNQWNAGYYGYAQ 370
G P N QW YGY Q
Sbjct: 234 GAGPMNMTPPAQNMQWGMNPYGYQQ 258
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 447 (162.4 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
Identities = 86/176 (48%), Positives = 124/176 (70%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIE-GYGFIEFISRAGAERVLQ 141
TLW+G+L+ W+DE ++ + GE V VK+IR+K +G+ GY F++F S A A + L
Sbjct: 66 TLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFASPAAAAKAL- 124
Query: 142 TFNGTPMPNGEQNFRLNWASFG--AGEKRDDT-PDHTIFVGDLAADVTDYMLQETFRARY 198
+ NGTPMPN + F+LNWA+ G A RDD P+++IFVGDL +V +Y+L F++R+
Sbjct: 125 SLNGTPMPNTNRLFKLNWATGGGLADRSRDDRGPEYSIFVGDLGPEVNEYVLVSLFQSRF 184
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
PS K AK++ D ++G ++GYGFVRF DE++Q RA++EM GV+C RPMRI AT K
Sbjct: 185 PSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTATPK 240
Score = 242 (90.2 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
Identities = 44/87 (50%), Positives = 55/87 (63%)
Query: 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRML 331
DPNNTTVFVG L VT++ LR F +G++ +VKIP GK CGFVQF R AE A+ +
Sbjct: 282 DPNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQM 341
Query: 332 NGTQLGGQNIRLSWGRSPSNKQAQPDP 358
G +G +RLSWGRS +N P
Sbjct: 342 QGYPIGNSRVRLSWGRSQNNSGPAGSP 368
Score = 117 (46.2 bits), Expect = 0.00031, P = 0.00031
Identities = 51/188 (27%), Positives = 90/188 (47%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTK-GYGFVRFGDESEQLRAM 233
T+++G+L + + ++ + + K++ D+ +GR+ GY FV F + +A+
Sbjct: 66 TLWMGELEPWIDENFVRNLW-FQMGEQVNVKMIRDKFSGRSNAGYCFVDFASPAAAAKAL 124
Query: 234 TEMNGVFCSTRPMRIGPATNK--KTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
+ +NG PM P TN+ K A+ DD ++FVG+L V +
Sbjct: 125 S-LNGT-----PM---PNTNRLFKLNWATGGGLADRSRDDRGPEYSIFVGDLGPEVNEYV 175
Query: 292 LRELF-SQYGQLVHVKI---P-AG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344
L LF S++ KI P +G + GFV+F+D + + AL + G G + +R+S
Sbjct: 176 LVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRIS 235
Query: 345 WGRSPSNK 352
+P NK
Sbjct: 236 TA-TPKNK 242
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 138/232 (59%), Positives = 169/232 (72%)
Query: 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232
D +IFVGDLA+DVTD ML++TF +RYPS KGAKVV+D TG +KGYGFVRFGDESE+ RA
Sbjct: 176 DFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRA 235
Query: 233 MTEMNGVFCSTRPMRIGPATNKKT------------VSASYQNSQVA----QSDDDPNNT 276
MTEMNGV+CS+R MRIG AT KK +S Y ++ A QSD D +NT
Sbjct: 236 MTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNT 295
Query: 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQL 336
T+FVG LDS VTDE LR+ F+Q+G++V VKIPAGK CGFVQF+DRS A+EA++ L+G +
Sbjct: 296 TIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAII 355
Query: 337 GGQNIRLSWGRSPSNKQAQPDP-NQWNAGYYGYAQGYENYGYAAAAPQDPSM 387
G Q +RLSWGRSP+NKQ + D +QWN GY G Q Y YGY A+ QD M
Sbjct: 356 GKQAVRLSWGRSPANKQMRTDSGSQWNGGYNG-RQNYGGYGYGASQNQDSGM 406
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 124/185 (67%), Positives = 151/185 (81%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+T+WIGDLQ WMDE+YL++CF+ GEV++VK+IRNKQTGQ E YGF+EF + A AE+VLQ
Sbjct: 84 KTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQ 143
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDT-PDHTIFVGDLAADVTDYMLQETFRARYPS 200
++NGT MPN EQ FRLNWA F GEKR +T D +IFVGDLA+DVTD ML++TF +RYPS
Sbjct: 144 SYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPS 203
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
KGAKVV+D TG +KGYGFVRFGDESE+ RAMTEMNGV+CS+R MRIG AT KK +
Sbjct: 204 LKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHE 263
Query: 261 YQNSQ 265
+SQ
Sbjct: 264 QYSSQ 268
Score = 137 (53.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 35/101 (34%), Positives = 56/101 (55%)
Query: 264 SQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK------RCGFVQ 317
+Q+ S +D N T+++G+L + + +L FSQ G+++ VKI K R GFV+
Sbjct: 74 TQIQSSSED--NKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVE 131
Query: 318 FADRSCAEEALRMLNGTQLGG--QNIRLSW-GRSPSNKQAQ 355
F + AE+ L+ NGT + Q RL+W G S K+A+
Sbjct: 132 FNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAE 172
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 117/294 (39%), Positives = 160/294 (54%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
TLW+G+L+ W+ E ++ + G+ V VK+IRN+ TG GY F+EF S A +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSM 153
Query: 143 FNGT-PMPNGEQNFRLNWASFGAGEKR-DDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
N P N + G EK +++IFVGDL+ +V ++ + F +RY S
Sbjct: 154 NNKPIPGTNHLFKLNWA-SGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK----- 255
K AK++ D T ++GYGFVRF DE++Q A+ EM G C RP+R+G AT K
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVF 272
Query: 256 ----TVSAS------YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
V S Y +Q D N+TVFVG L V++E L+ LF +G++V+V
Sbjct: 273 SPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYV 332
Query: 306 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPN 359
KIP GK CGFVQF +R AE A+ L G LG IRLSWGR+ N A P N
Sbjct: 333 KIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN-QNPIAAPALN 385
Score = 138 (53.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 58/214 (27%), Positives = 97/214 (45%)
Query: 148 MPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVV 207
M + E N +++G+ + T+++G+L VT+ +Q+ + + K K++
Sbjct: 67 MASNESGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVK-VKLI 125
Query: 208 IDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK--KTVSASYQNSQ 265
+R TG GY FV F E AM+ MN +P+ P TN K AS +
Sbjct: 126 RNRYTGMNAGYCFVEFASPHEASSAMS-MNN-----KPI---PGTNHLFKLNWASGGGLR 176
Query: 266 VAQSDDDPNNTTVFVGNLDSIVTDEHLRELF-SQYGQLVHVKI---P---AGKRCGFVQF 318
+S + ++FVG+L V + + LF S+Y KI P + GFV+F
Sbjct: 177 -EKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Query: 319 ADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 352
D + + AL + G G + IR+ +P +K
Sbjct: 236 TDENDQKSALAEMQGQICGDRPIRVGLA-TPKSK 268
>POMBASE|SPAC17A2.09c [details] [associations]
symbol:csx1 "RNA-binding protein Csx1" species:4896
"Schizosaccharomyces pombe" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:2000815 "regulation of mRNA
stability involved in response to oxidative stress" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC17A2.09c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000932 eggNOG:COG0724 GO:GO:2000815
EMBL:D83417 EMBL:D83418 PIR:T37810 RefSeq:NP_594243.1
ProteinModelPortal:O13759 IntAct:O13759 MINT:MINT-4667695
STRING:O13759 EnsemblFungi:SPAC17A2.09c.1 GeneID:2542151
KEGG:spo:SPAC17A2.09c OrthoDB:EOG44BFB8 NextBio:20803223
GO:GO:0070935 Uniprot:O13759
Length = 632
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 97/240 (40%), Positives = 139/240 (57%)
Query: 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT---PDHTIFVGDL 181
Y F++F S A AER L +N T +P F+LNWA+ G + + P+ +IFVGDL
Sbjct: 130 YCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDL 189
Query: 182 AADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241
D L TFR+ YPS AK+++D +TG ++ YGFVRF E EQ A+ M G C
Sbjct: 190 LPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLC 249
Query: 242 STRPMRIGPATNKKTVS-----------ASYQNSQVAQS--DDDPNNTTVFVGNLDSIVT 288
RP+RI A+ K S S N Q Q DP NTTVFVG L S ++
Sbjct: 250 QGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLS 309
Query: 289 DEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348
++ L+ F +G+++++KIP GK CGFVQ++++S AE+A+ + G +G +IRL+WG +
Sbjct: 310 EKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
Score = 368 (134.6 bits), Expect = 3.0e-33, P = 3.0e-33
Identities = 82/215 (38%), Positives = 120/215 (55%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVL 140
TLW+GDL+ WMD T++ +A E V VKV+R+K + + Y F++F S A AER L
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDD----TPDHTIFVGDLAADVTDYMLQETFRA 196
+N T +P F+LNWA+ G G + ++ P+ +IFVGDL D L TFR+
Sbjct: 146 MKYNNTMIPGAHCTFKLNWAT-GGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRS 204
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
YPS AK+++D +TG ++ YGFVRF E EQ A+ M G C RP+RI A+ K
Sbjct: 205 IYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSR 264
Query: 257 VSASYQNS----QVAQSDDDPNNTTVFVGNLDSIV 287
S + ++ + S+ PN + L++ V
Sbjct: 265 ASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTV 299
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 246 (91.7 bits), Expect = 2.4e-42, Sum P(2) = 2.4e-42
Identities = 61/175 (34%), Positives = 99/175 (56%)
Query: 123 EGYGFIEFISRAGAERVLQTFNGTPMPN-GEQNFRLNWASFGAGEKRDDTPDH------T 175
+GY F++F S A L NG +PN + +LNWA+ + + +
Sbjct: 106 QGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCS 164
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFVGDLA +VT+ L E F RY ST AK+V D++TG +KGYGFV+F + EQ A++E
Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224
Query: 236 MNGVFCSTRPMRIGPATNKKT-VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTD 289
M GVF + R +++GP + ++ VS + ++ + S ++ N + F+ S +++
Sbjct: 225 MQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSN 279
Score = 233 (87.1 bits), Expect = 2.4e-42, Sum P(2) = 2.4e-42
Identities = 42/77 (54%), Positives = 54/77 (70%)
Query: 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRML 331
DPNNTTVF+G L S+VT++ LR F +G +V+VKIP GK CGFVQ+ DR AE A+ +
Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGM 368
Query: 332 NGTQLGGQNIRLSWGRS 348
G + +RLSWGRS
Sbjct: 369 QGFPIANSRVRLSWGRS 385
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 45/155 (29%), Positives = 72/155 (46%)
Query: 216 KGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSD-DDPN 274
+GY FV F + A+ + NG+ P + ++SY NS + ++ N
Sbjct: 106 QGYCFVDFPSSTHAANALLK-NGMLIPNFPNK---KLKLNWATSSYSNSNNSLNNVKSGN 161
Query: 275 NTTVFVGNLDSIVTDEHLRELF-SQYGQLVHVKIP----AG--KRCGFVQFADRSCAEEA 327
N ++FVG+L VT+ L ELF ++Y H KI G K GFV+F + + A
Sbjct: 162 NCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLA 221
Query: 328 LRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 362
L + G L G+ I++ G + +Q N +N
Sbjct: 222 LSEMQGVFLNGRAIKV--GPTSGQQQHVSGNNDYN 254
Score = 71 (30.1 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
++++GDL + E+ L F + K++ ++ TG +GYGF++F + + L
Sbjct: 164 SIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALS 223
Query: 142 TFNGTPMPNG 151
G + NG
Sbjct: 224 EMQGVFL-NG 232
Score = 69 (29.3 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 26/90 (28%), Positives = 42/90 (46%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEV-VAVKVIRNK--QTGQI--------EGYGFIEFIS 132
L++GDL D+ + +A GE + V+++ N G +GY F++F S
Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPS 115
Query: 133 RAGAERVLQTFNGTPMPN-GEQNFRLNWAS 161
A L NG +PN + +LNWA+
Sbjct: 116 STHAANALLK-NGMLIPNFPNKKLKLNWAT 144
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 242 (90.2 bits), Expect = 6.0e-40, Sum P(2) = 6.0e-40
Identities = 50/101 (49%), Positives = 65/101 (64%)
Query: 261 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD 320
+Q+ Q Q DPNNTTVFVG L S V++ L LF +G + VKIP GK CGFV++++
Sbjct: 506 HQHLQQGQQFVDPNNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQVKIPPGKNCGFVKYSN 565
Query: 321 RSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQAQPDPNQ 360
R AEEA+ + G +GG +RLSWGR S SNK+ Q Q
Sbjct: 566 REEAEEAIAAMQGFVIGGNRVRLSWGRVSVSNKKYQQQQQQ 606
Score = 223 (83.6 bits), Expect = 6.0e-40, Sum P(2) = 6.0e-40
Identities = 60/157 (38%), Positives = 88/157 (56%)
Query: 124 GYGFIEFISRAGAERVL----QTFNGTPMP------NGEQN----FRLNWASFGAGEKRD 169
GY F+EF S A+ L Q MP N N FRLNWAS GA
Sbjct: 189 GYCFVEFESFEDAQHALSLNGQLLPDIAMPSQSNFPNNPDNQKKYFRLNWAS-GATLSAP 247
Query: 170 --DTPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDE 226
TP++++FVGDL+A T+ L F+ +P S K +V+ D ++G+++ +GFVRF +E
Sbjct: 248 IVQTPEYSLFVGDLSASTTEAHLLAFFQKNFPNSIKTVRVMTDPISGKSRCFGFVRFTEE 307
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQN 263
SE+ RA+ EMNG + + RP+R+ AT + V+ + N
Sbjct: 308 SERQRALIEMNGAWFAGRPLRVALAT-PRNVARRFNN 343
Score = 90 (36.7 bits), Expect = 5.2e-26, Sum P(2) = 5.2e-26
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCF-AHTGEVVAVKVIRNKQT-------GQIE-GYGFIEFIS 132
RTLW+GDL W+DE + + + + V VK+I+ K G GY F+EF S
Sbjct: 138 RTLWMGDLDPWLDENAIQDLWWSILQKKVVVKIIKPKNMKPDINFQGLTNSGYCFVEFES 197
Query: 133 RAGAERVLQTFNGTPMPN 150
A+ L + NG +P+
Sbjct: 198 FEDAQHAL-SLNGQLLPD 214
Score = 77 (32.2 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 30/109 (27%), Positives = 50/109 (45%)
Query: 165 GEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFG 224
G++ D + T+FVG L++DV++ L F+ + + K+ G K GFV++
Sbjct: 512 GQQFVDPNNTTVFVGGLSSDVSEPTLHTLFKP-FGLIQQVKIP----PG--KNCGFVKYS 564
Query: 225 DESEQLRAMTEMNGVFCSTRPMRIG----PATNKKTVSASYQN-SQVAQ 268
+ E A+ M G +R+ +NKK Q +QVAQ
Sbjct: 565 NREEAEEAIAAMQGFVIGGNRVRLSWGRVSVSNKKYQQQQQQQVAQVAQ 613
Score = 68 (29.0 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHT--GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+L++GDL E +L F + V+V+ + +G+ +GF+ F + +R L
Sbjct: 255 SLFVGDLSASTTEAHLLAFFQKNFPNSIKTVRVMTDPISGKSRCFGFVRFTEESERQRAL 314
Query: 141 QTFNG 145
NG
Sbjct: 315 IEMNG 319
Score = 37 (18.1 bits), Expect = 6.3e-17, Sum P(2) = 6.3e-17
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 364 GYYGYAQGYENYGY 377
GYYG G GY
Sbjct: 447 GYYGQTSGSGGGGY 460
>UNIPROTKB|E2QV44 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001514 GeneTree:ENSGT00510000047100 CTD:54952 OMA:EDPTPQL
EMBL:AAEX03001701 RefSeq:XP_535338.2 Ensembl:ENSCAFT00000018643
GeneID:478164 KEGG:cfa:478164 NextBio:20853531 Uniprot:E2QV44
Length = 287
Score = 396 (144.5 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 85/188 (45%), Positives = 125/188 (66%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKTVS 258
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 180
Query: 259 ASYQNSQV 266
+ SQ+
Sbjct: 181 KPVEYSQM 188
Score = 163 (62.4 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 63/213 (29%), Positives = 102/213 (47%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
++NG +P+ G AT K +Y + Q D+ P + +FVG+L V D L E
Sbjct: 64 KING-----KPLP-G-ATPAKRFKLNYA-TYGKQPDNSPEYS-LFVGDLTPDVDDGMLYE 114
Query: 295 LFSQ-Y-----GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ-LGGQNIRLSWGR 347
F + Y G++V + K GFV+F D + AL G LG + +RLS
Sbjct: 115 FFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA- 173
Query: 348 SPSNKQAQP-DPNQ-WNAGYYGYAQGYENYGYA 378
P + +P + +Q ++ Y Y Q Y+NY YA
Sbjct: 174 IPKASRVKPVEYSQMYSYSYNQYYQQYQNY-YA 205
Score = 44 (20.5 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 360 QW----NAGYYGYAQGYENYGYAAAAPQ 383
QW N G Y Y+ Y YGY + Q
Sbjct: 206 QWGYDQNTGSYSYS--YPQYGYTQSTMQ 231
>UNIPROTKB|Q9NX07 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0001514 EMBL:AL513497 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 EMBL:AK000510
EMBL:BC000680 EMBL:BC039879 IPI:IPI00016448 IPI:IPI00867673
RefSeq:NP_060316.1 UniGene:Hs.533626 PDB:2DHG PDB:2DIV PDBsum:2DHG
PDBsum:2DIV ProteinModelPortal:Q9NX07 SMR:Q9NX07 STRING:Q9NX07
PhosphoSite:Q9NX07 DMDM:74761781 PRIDE:Q9NX07
Ensembl:ENST00000373830 GeneID:54952 KEGG:hsa:54952 UCSC:uc001bqh.3
GeneCards:GC01P028879 H-InvDB:HIX0000337 HGNC:HGNC:30813
HPA:HPA032069 neXtProt:NX_Q9NX07 PharmGKB:PA164727240
InParanoid:Q9NX07 PhylomeDB:Q9NX07 ChiTaRS:TRNAU1AP
EvolutionaryTrace:Q9NX07 GenomeRNAi:54952 NextBio:58127 Bgee:Q9NX07
CleanEx:HS_TRNAU1AP Genevestigator:Q9NX07 Uniprot:Q9NX07
Length = 287
Score = 396 (144.5 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 85/188 (45%), Positives = 125/188 (66%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKTVS 258
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 180
Query: 259 ASYQNSQV 266
+ SQ+
Sbjct: 181 KPVEYSQM 188
Score = 163 (62.4 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 63/213 (29%), Positives = 102/213 (47%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
++NG +P+ G AT K +Y + Q D+ P + +FVG+L V D L E
Sbjct: 64 KING-----KPLP-G-ATPAKRFKLNYA-TYGKQPDNSPEYS-LFVGDLTPDVDDGMLYE 114
Query: 295 LFSQ-Y-----GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ-LGGQNIRLSWGR 347
F + Y G++V + K GFV+F D + AL G LG + +RLS
Sbjct: 115 FFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA- 173
Query: 348 SPSNKQAQP-DPNQ-WNAGYYGYAQGYENYGYA 378
P + +P + +Q ++ Y Y Q Y+NY YA
Sbjct: 174 IPKASRVKPVEYSQMYSYSYNQYYQQYQNY-YA 205
Score = 44 (20.5 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 360 QW----NAGYYGYAQGYENYGYAAAAPQ 383
QW N G Y Y+ Y YGY + Q
Sbjct: 206 QWGYDQNTGSYSYS--YPQYGYTQSTMQ 231
>UNIPROTKB|I3LHP4 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:FP565629
RefSeq:XP_003356292.1 ProteinModelPortal:I3LHP4 SMR:I3LHP4
PRIDE:I3LHP4 Ensembl:ENSSSCT00000028704 GeneID:100621644
KEGG:ssc:100621644 Uniprot:I3LHP4
Length = 287
Score = 396 (144.5 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 85/188 (45%), Positives = 125/188 (66%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKTVS 258
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 180
Query: 259 ASYQNSQV 266
+ SQ+
Sbjct: 181 KPVEYSQM 188
Score = 163 (62.4 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 63/213 (29%), Positives = 102/213 (47%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
++NG +P+ G AT K +Y + Q D+ P + +FVG+L V D L E
Sbjct: 64 KING-----KPLP-G-ATPAKRFKLNYA-TYGKQPDNSPEYS-LFVGDLTPDVDDGMLYE 114
Query: 295 LFSQ-Y-----GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ-LGGQNIRLSWGR 347
F + Y G++V + K GFV+F D + AL G LG + +RLS
Sbjct: 115 FFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA- 173
Query: 348 SPSNKQAQP-DPNQ-WNAGYYGYAQGYENYGYA 378
P + +P + +Q ++ Y Y Q Y+NY YA
Sbjct: 174 IPKASRVKPVEYSQMYSYSYNQYYQQYQNY-YA 205
Score = 44 (20.5 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 360 QW----NAGYYGYAQGYENYGYAAAAPQ 383
QW N G Y Y+ Y YGY + Q
Sbjct: 206 QWGYDQNTGSYSYS--YPQYGYTQSTMQ 231
>UNIPROTKB|Q1RMJ7 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0001514
GeneTree:ENSGT00510000047100 EMBL:BC114858 IPI:IPI00693783
RefSeq:NP_001069435.1 UniGene:Bt.19750 ProteinModelPortal:Q1RMJ7
SMR:Q1RMJ7 PRIDE:Q1RMJ7 Ensembl:ENSBTAT00000013718 GeneID:532582
KEGG:bta:532582 CTD:54952 HOGENOM:HOG000234338 HOVERGEN:HBG056959
InParanoid:Q1RMJ7 OMA:EDPTPQL OrthoDB:EOG44BB34 NextBio:20875741
Uniprot:Q1RMJ7
Length = 287
Score = 395 (144.1 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 84/188 (44%), Positives = 124/188 (65%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPATNKKTVS 258
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G ++P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKASRV 180
Query: 259 ASYQNSQV 266
+ SQ+
Sbjct: 181 KPVEYSQM 188
Score = 163 (62.4 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 63/213 (29%), Positives = 102/213 (47%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
++NG +P+ G AT K +Y + Q D+ P + +FVG+L V D L E
Sbjct: 64 KING-----KPLP-G-ATPAKRFKLNYA-TYGKQPDNSPEYS-LFVGDLTPDVDDGMLYE 114
Query: 295 LFSQ-Y-----GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGT-QLGGQNIRLSWGR 347
F + Y G++V + K GFV+F D + AL G LG + +RLS
Sbjct: 115 FFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVA- 173
Query: 348 SPSNKQAQP-DPNQ-WNAGYYGYAQGYENYGYA 378
P + +P + +Q ++ Y Y Q Y+NY YA
Sbjct: 174 IPKASRVKPVEYSQMYSYSYNQYYQQYQNY-YA 205
Score = 44 (20.5 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 360 QW----NAGYYGYAQGYENYGYAAAAPQ 383
QW N G Y Y+ Y YGY + Q
Sbjct: 206 QWGYDQNTGSYSYS--YPQYGYTQSTMQ 231
>RGD|619995 [details] [associations]
symbol:Secp43 "tRNA selenocysteine associated protein"
species:10116 "Rattus norvegicus" [GO:0000049 "tRNA binding"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:619995 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000049
HSSP:P11940 GO:GO:0001514 HOVERGEN:HBG056959 EMBL:AF181856
IPI:IPI00215043 RefSeq:NP_075416.1 UniGene:Rn.170540
ProteinModelPortal:Q9QZI7 SMR:Q9QZI7 GeneID:65241 KEGG:rno:65241
CTD:65241 NextBio:614199 Genevestigator:Q9QZI7 Uniprot:Q9QZI7
Length = 287
Score = 394 (143.8 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 85/188 (45%), Positives = 124/188 (65%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKTVS 258
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V +P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRV 180
Query: 259 ASYQNSQV 266
+ SQ+
Sbjct: 181 KPVEYSQM 188
Score = 160 (61.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 63/213 (29%), Positives = 102/213 (47%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
++NG +P+ G AT K +Y + Q D+ P + +FVG+L V D L E
Sbjct: 64 KING-----KPLP-G-ATPAKRFKLNYA-TYGKQPDNSPEYS-LFVGDLTPDVDDGMLYE 114
Query: 295 LFSQ-Y-----GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ-LGGQNIRLSWGR 347
F + Y G++V + K GFV+F D + AL G LG + +RLS
Sbjct: 115 FFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVA- 173
Query: 348 SPSNKQAQP-DPNQ-WNAGYYGYAQGYENYGYA 378
P + +P + +Q ++ Y Y Q Y+NY YA
Sbjct: 174 IPKASRVKPVEYSQMYSYSYNQYYQQYQNY-YA 205
Score = 44 (20.5 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 360 QW----NAGYYGYAQGYENYGYAAAAPQ 383
QW N G Y Y+ Y YGY + Q
Sbjct: 206 QWGYDQNTGSYSYS--YPQYGYTQSTMQ 231
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 242 (90.2 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 61/160 (38%), Positives = 89/160 (55%)
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPN-------GEQN------FRLNWASFGAGEKRD- 169
GY F+EF ++ A+ L + N TP+PN + N FRLNWAS GA +
Sbjct: 129 GYCFVEFETQKDAKFAL-SLNATPLPNFYSPTTNSQTNPTFKRTFRLNWAS-GATLQSSI 186
Query: 170 -DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
TP+ ++FVGDL+ T+ L F+ R+ S K +V+ D LTG ++ +GFVRFGDE E
Sbjct: 187 PSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDE 246
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQ 268
+ RA+ EM+G + R +R+ AT + + Q Q Q
Sbjct: 247 RRRALIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQQQQ 286
Score = 215 (80.7 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 46/100 (46%), Positives = 61/100 (61%)
Query: 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRML 331
DP NTTVFVG L T+ LR LF +G +++V+IP GK CGFV+F R AE +++ L
Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGL 415
Query: 332 NGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGYAQG 371
G +GG IRLSWGR PS+ A+ + A Y + G
Sbjct: 416 QGFIVGGSPIRLSWGR-PSSSNAKTNSTIMGASQYMSSNG 454
Score = 101 (40.6 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 39/156 (25%), Positives = 68/156 (43%)
Query: 217 GYGFVRFGDESEQLRAM----TEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSD-D 271
GY FV F + + A+ T + + T + P T K+T ++ + QS
Sbjct: 129 GYCFVEFETQKDAKFALSLNATPLPNFYSPTTNSQTNP-TFKRTFRLNWASGATLQSSIP 187
Query: 272 DPNNTTVFVGNLDSIVTDEHLRELF-SQYGQLVHVKI---P--AGKRC-GFVQFADRSCA 324
++FVG+L T+ L LF +++ + V++ P RC GFV+F D
Sbjct: 188 STPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDER 247
Query: 325 EEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQ 360
AL ++G G+ +R+++ +N Q Q
Sbjct: 248 RRALIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQ 283
Score = 73 (30.8 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 25/84 (29%), Positives = 34/84 (40%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEF---ISRAGAER 138
RTLW+GDL DE + ++ + V VK+IR K+ I S AE
Sbjct: 34 RTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKNLLIPCSSTSSSNNNTSEENAEN 93
Query: 139 VLQTFNGTPMPNGEQNFRLNWASF 162
N T + Q +N SF
Sbjct: 94 QQSASNSTDQLDNSQMININGISF 117
Score = 57 (25.1 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 83 TLWIGDLQYWMDETYLNTCF-AHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+L++GDL E L + F V V+V+ + TG +GF+ F R L
Sbjct: 193 SLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALI 252
Query: 142 TFNG 145
+G
Sbjct: 253 EMSG 256
>UNIPROTKB|E1BZH5 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:AADN02043953
IPI:IPI00576069 RefSeq:XP_417743.3 ProteinModelPortal:E1BZH5
Ensembl:ENSGALT00000001994 GeneID:419597 KEGG:gga:419597 CTD:419597
Uniprot:E1BZH5
Length = 287
Score = 393 (143.4 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 83/176 (47%), Positives = 120/176 (68%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE+V +VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFVSRAFATMGELVLSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL ADV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTADVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK 254
S +G KVV+D+ G +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K
Sbjct: 122 SCRGGKVVLDQ-AGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176
Score = 170 (64.9 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 63/212 (29%), Positives = 100/212 (47%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFVSRAFATMGELVLSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
++NG +P+ G AT K +Y + Q D+ P + +FVG+L + V D L E
Sbjct: 64 KING-----KPLP-G-ATPAKRFKLNYA-TYGKQPDNSPEYS-LFVGDLTADVDDGMLYE 114
Query: 295 LFSQ-Y-----GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ-LGGQNIRLSWGR 347
F + Y G++V + K GFV+F D + AL G LG + +RLS
Sbjct: 115 FFVKVYPSCRGGKVVLDQAGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 174
Query: 348 SPSNKQAQPDPNQ-WNAGYYGYAQGYENYGYA 378
+N+ + NQ +N Y Y Q Y +Y YA
Sbjct: 175 PKANRMKPTEYNQMYNYNYNQYYQQYHSY-YA 205
Score = 44 (20.5 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 360 QW----NAGYYGYAQGYENYGYAAAAPQ 383
QW N G Y Y+ Y YGY + Q
Sbjct: 206 QWGYDQNTGSYSYS--YPQYGYTQSTMQ 231
>MGI|MGI:1919037 [details] [associations]
symbol:Trnau1ap "tRNA selenocysteine 1 associated protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001514 "selenocysteine incorporation"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919037 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HSSP:P11940 GO:GO:0001514
GeneTree:ENSGT00510000047100 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 ChiTaRS:TRNAU1AP
EMBL:AK152986 EMBL:CR752656 EMBL:BC005795 EMBL:BC048840
EMBL:BC055454 EMBL:BC099594 IPI:IPI00556790 RefSeq:NP_082201.2
UniGene:Mm.239183 ProteinModelPortal:Q80VC6 SMR:Q80VC6
STRING:Q80VC6 PhosphoSite:Q80VC6 PRIDE:Q80VC6
Ensembl:ENSMUST00000030730 GeneID:71787 KEGG:mmu:71787
UCSC:uc008vbb.1 InParanoid:Q80VC6 NextBio:334520 Bgee:Q80VC6
CleanEx:MM_TRSPAP1 Genevestigator:Q80VC6 Uniprot:Q80VC6
Length = 287
Score = 391 (142.7 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 85/188 (45%), Positives = 123/188 (65%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKTVS 258
S +G KVV+D TG +KGYGFV+F DE EQ RA+TE G V +P+R+ A K +
Sbjct: 122 SCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRV 180
Query: 259 ASYQNSQV 266
+ SQ+
Sbjct: 181 KPVEYSQM 188
Score = 159 (61.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 64/213 (30%), Positives = 101/213 (47%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
++NG +P+ G AT K +Y + Q D+ P + +FVG+L V D L E
Sbjct: 64 KING-----KPLP-G-ATPAKRFKLNYA-TYGKQPDNSPEYS-LFVGDLTPDVDDGMLYE 114
Query: 295 LFSQ-YGQLVHVKI---PAG--KRCGFVQFADRSCAEEALRMLNGTQ-LGGQNIRLSWGR 347
F + Y K+ P G K GFV+F D + AL G LG + +RLS
Sbjct: 115 FFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVA- 173
Query: 348 SPSNKQAQP-DPNQ-WNAGYYGYAQGYENYGYA 378
P + +P + +Q ++ Y Y Q Y+NY YA
Sbjct: 174 IPKASRVKPVEYSQMYSYSYNQYYQQYQNY-YA 205
Score = 44 (20.5 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 360 QW----NAGYYGYAQGYENYGYAAAAPQ 383
QW N G Y Y+ Y YGY + Q
Sbjct: 206 QWGYDQNTGSYSYS--YPQYGYTQSTMQ 231
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 295 (108.9 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 70/188 (37%), Positives = 104/188 (55%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ-TGQIEGYGFIEFISRAGAERVL 140
R L++G L + E L F TG V++VK+I +K + YGF+EF AER +
Sbjct: 90 RALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAM 149
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARYP 199
QT NG + E R+NWA ++DT +H IFVGDL+ +V D +L + F A +
Sbjct: 150 QTLNGRRIHQSE--IRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSA-FG 206
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSA 259
S A+V+ D TGR++GYGFV F + ++ +A+T M+G + +R +R A K S
Sbjct: 207 SVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQPSI 266
Query: 260 SYQNSQVA 267
S Q + A
Sbjct: 267 SQQQAMAA 274
Score = 197 (74.4 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 61/195 (31%), Positives = 98/195 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR-LTGRTKGYGFVRFGDESEQLRAMT 234
++VG L VT+ +L++ F K++ D+ + YGFV F D RAM
Sbjct: 92 LYVGGLDPRVTEDILKQIFETT-GHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQ 150
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
+NG RI + + V+ +YQ S A +D N+ +FVG+L + V DE L +
Sbjct: 151 TLNG-------RRIHQSEIR--VNWAYQ-SNTANKEDTSNHFHIFVGDLSNEVNDEVLLQ 200
Query: 295 LFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348
FS +G + ++ G+ GFV F +R+ AE+AL ++G LG + IR +W
Sbjct: 201 AFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNW--- 257
Query: 349 PSNKQAQPDPNQWNA 363
+N++ QP +Q A
Sbjct: 258 -ANQKGQPSISQQQA 271
Score = 148 (57.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 36/125 (28%), Positives = 61/125 (48%)
Query: 245 PMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH 304
P I + VS + V ++ +PN ++VG LD VT++ L+++F G ++
Sbjct: 59 PTAITTPMSGNMVSPTSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVIS 118
Query: 305 VKI-P------AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
VKI P G GFV+F D AE A++ LNG ++ IR++W + +
Sbjct: 119 VKIIPDKNFNSKGANYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDT 178
Query: 358 PNQWN 362
N ++
Sbjct: 179 SNHFH 183
Score = 123 (48.4 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 31/116 (26%), Positives = 51/116 (43%)
Query: 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ 335
TT +VGNL T + LF +G ++ ++ A + F++ A A+ LNG
Sbjct: 308 TTCYVGNLTPYTTQNDIVPLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQLNGYN 367
Query: 336 LGGQNIRLSWGRS-PSNKQAQPDPNQWNAGYYGYAQG--YENYGYAAA--APQDPS 386
+ G+ ++ SWG+ P Q P Q + + G + YG PQ P+
Sbjct: 368 VNGRPLKCSWGKDRPPTGQFDNFPGQQANSPFASSPGPYFPQYGGPGGPMTPQGPA 423
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 99/304 (32%), Positives = 159/304 (52%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E RTL++G+L + E ++ T F G V KVI + G + Y F+EF A +
Sbjct: 44 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQASQA 100
Query: 140 LQTFNGTPMPNGEQNFRLNWA-SFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
LQT N + + E ++NWA G + + DT H +FVGDL+++V + L+E F+
Sbjct: 101 LQTMNKRLLLDREM--KVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQP- 157
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK-- 255
+ AKV+ D T ++KGYGFV + E RA+ +MNG + R +R AT K
Sbjct: 158 FGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGD 217
Query: 256 TVSASYQNSQVAQ---SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR 312
S+ N + + +NT+V+VGN+ S+ DE +R+ F+ +G++ V+I +
Sbjct: 218 QEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDE-IRQGFASFGRITEVRIFKMQG 276
Query: 313 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGYAQGY 372
FV+F ++ A +A+ +N +GGQ +R SWG++ D + G YGY G
Sbjct: 277 YAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTG-------DTGKTPGGSYGYGYGN 329
Query: 373 ENYG 376
+ G
Sbjct: 330 SSSG 333
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 274 (101.5 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
Identities = 68/188 (36%), Positives = 101/188 (53%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
R L++G L + E L F TG V VK+I +K YGF+E+ A+R +Q
Sbjct: 85 RALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYN-YGFVEYDDPGAADRAMQ 143
Query: 142 TFNGTPMPNGEQNFRLNWASFGA-GEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARYP 199
T NG + E R+NWA A ++DT +H IFVGDL+ +V D +L + F +
Sbjct: 144 TLNGRRVHQSE--IRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSV-FG 200
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSA 259
S A+V+ D TGR++GYGFV F D S+ +A++ M+G + +R +R A K S
Sbjct: 201 SVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQPSI 260
Query: 260 SYQNSQVA 267
+ Q + A
Sbjct: 261 AQQQAMSA 268
Score = 212 (79.7 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 65/224 (29%), Positives = 109/224 (48%)
Query: 146 TPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK 205
+PM G+Q+ ++ + ++VG L A VT+ +L++ F + K
Sbjct: 57 SPMGGGDQSALMSPGGTFTRRTAPEPNKRALYVGGLDARVTEDVLRQIFETT-GHVQNVK 115
Query: 206 VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQ 265
++ D+ + YGFV + D RAM +NG R+ + + V+ +YQ +
Sbjct: 116 IIPDK-NAKGYNYGFVEYDDPGAADRAMQTLNG-------RRVHQSEIR--VNWAYQAAT 165
Query: 266 VAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFA 319
A +D N+ +FVG+L + V DE L + FS +G + ++ G+ GFV F
Sbjct: 166 SATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFR 225
Query: 320 DRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNA 363
DRS AE+AL ++G LG + IR +W +N++ QP Q A
Sbjct: 226 DRSDAEKALSSMDGEWLGSRAIRCNW----ANQKGQPSIAQQQA 265
Score = 124 (48.7 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
Identities = 35/132 (26%), Positives = 62/132 (46%)
Query: 262 QNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADR 321
Q+ ++ + TT +VGNL T + LF +G +V + A + F++
Sbjct: 288 QSYEMVVNQTPAYQTTCYVGNLTPYTTANDVVPLFQNFGYVVESRFQADRGFAFIKMDSH 347
Query: 322 SCAEEALRMLNGTQLGGQNIRLSWGR--SPSNKQAQPDPNQ----WNAGYYGY----AQG 371
A +A+ LNG + G+ ++ SWG+ + +N Q DP+Q +AG G+ +
Sbjct: 348 ENAAQAICGLNGYNVNGRPLKCSWGKDKNSTNPQGNFDPSQAFSPQSAGGPGFPGTPSTY 407
Query: 372 YENYGYAAAAPQ 383
+ YG + PQ
Sbjct: 408 FPQYGGQFSGPQ 419
Score = 41 (19.5 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 333 GTQLGGQ--NIRLSWGRSPSN-KQAQPDPNQWNAGYYGYAQGYENYGYAAAAPQ 383
G Q G N + +SP+ +Q P N +AG YG Q N +++ PQ
Sbjct: 412 GGQFSGPQGNFGPNSAQSPAGFQQPMPFSNPPSAGGYGRGQQAPNAQWSS--PQ 463
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 94/309 (30%), Positives = 155/309 (50%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
G+ RTL++G+L + E + F+ G + K+I + T + Y F+EF A
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI-TEHTSN-DPYCFVEFYEHRDAAA 63
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 64 ALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAF-APF 120
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258
A+VV D TG++KGYGFV F ++ + A+ M G + R +R AT K
Sbjct: 121 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAP 180
Query: 259 ASYQNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK 311
S Q + Q + P N TV+ G + S +TD+ +R+ FS +GQ++ +++ K
Sbjct: 181 KSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK 240
Query: 312 RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ--AQPDPNQWN--AGYY 366
FV+F+ A A+ +NGT + G ++ WG+ SP + Q D +QW + Y
Sbjct: 241 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVY 300
Query: 367 GYAQGYENY 375
G Q Y Y
Sbjct: 301 GNPQQYGQY 309
Score = 189 (71.6 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 56/195 (28%), Positives = 96/195 (49%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
DD T++VG+L+ DVT+ ++ + F P K K++ + + Y FV F + +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
A+ MNG R + +G K V ++ + +Q D N+ VFVG+L +T
Sbjct: 61 AAAALAAMNG-----RKI-LG-----KEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 109
Query: 289 DEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
E ++ F+ +G++ ++ GK GFV F ++ AE A+ + G LGG+ IR
Sbjct: 110 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 169
Query: 343 LSWG--RSPSNKQAQ 355
+W + P+ K Q
Sbjct: 170 TNWATRKPPAPKSTQ 184
Score = 116 (45.9 bits), Expect = 0.00037, P = 0.00037
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG----FVQFADRSCAE 325
+DD T++VGNL VT+ + +LFSQ G K+ FV+F + A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 326 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
AL +NG ++ G+ ++++W +PS+++
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQK 90
>ZFIN|ZDB-GENE-040426-2386 [details] [associations]
symbol:trnau1apl "tRNA selenocysteine 1 associated
protein 1, like" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2386 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234338 OrthoDB:EOG44BB34 EMBL:BC098884
IPI:IPI00833586 UniGene:Dr.5347 ProteinModelPortal:Q4KM14
SMR:Q4KM14 STRING:Q4KM14 PRIDE:Q4KM14 InParanoid:Q4KM14
ArrayExpress:Q4KM14 Uniprot:Q4KM14
Length = 316
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 74/185 (40%), Positives = 114/185 (61%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL +MDE ++ F+ GE VK+I ++ TG GY F+E A +R +Q
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 142 TFNGTPMP--NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG +P N + F+LN+A++G ++ + P+ ++FVGDL ++V DY L + F ++P
Sbjct: 67 RLNGKLVPGSNPPRKFKLNYATYG--KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFP 124
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRPMRIGPATNKKTVS 258
S KGAKVV D G ++GYGFV+F DE+EQ +A+ E N +P+RI A NK +
Sbjct: 125 SCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKGNKA 183
Query: 259 ASYQN 263
++Y N
Sbjct: 184 STYHN 188
Score = 175 (66.7 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 61/217 (28%), Positives = 103/217 (47%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + +++ F + G K++ R+TG + GY FV DE+ R +
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 235 EMNGVFCSTRPMRIGPATNK-KTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLR 293
+NG ++ P +N + +Y + + + P +VFVG+L S V D L
Sbjct: 67 RLNG--------KLVPGSNPPRKFKLNYA-TYGKRPEPGPE-FSVFVGDLTSEVDDYQLH 116
Query: 294 ELF-SQYGQLVHVKI---PAG--KRCGFVQFADRSCAEEALRML-NGTQLGGQNIRLSWG 346
+ F ++ K+ P G + GFV+F+D + ++AL N + LGG+ IR+S
Sbjct: 117 QFFLKKFPSCKGAKVVTDPYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIA 176
Query: 347 RSPSNKQAQPDPNQWNAGYYGYAQGYENYGYAAAAPQ 383
+ NK A NQ N Y Q Y Y + PQ
Sbjct: 177 VNKGNK-ASTYHNQNNTYNTNYQQQYYRQPYNSYYPQ 212
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 95/314 (30%), Positives = 155/314 (49%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
G+ RTL++G+L + E + F+ G + K+I + T + Y F+EF A
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI-TEHTSN-DPYCFVEFYEHRDAAA 63
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 64 ALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAF-APF 120
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258
A+VV D TG++KGYGFV F ++ + A+ M G + R +R AT K
Sbjct: 121 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAP 180
Query: 259 ASYQNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK 311
S Q + Q + P N TV+ G + S +TD+ +R+ FS +GQ++ +++ K
Sbjct: 181 KSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK 240
Query: 312 RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPS-NKQAQP------DPNQWN- 362
FV+F+ A A+ +NGT + G ++ WG+ SP K Q D +QW
Sbjct: 241 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVIRFFVDYSQWGQ 300
Query: 363 -AGYYGYAQGYENY 375
+ YG Q Y Y
Sbjct: 301 WSQVYGNPQQYGQY 314
Score = 189 (71.6 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 56/195 (28%), Positives = 96/195 (49%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
DD T++VG+L+ DVT+ ++ + F P K K++ + + Y FV F + +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
A+ MNG R + +G K V ++ + +Q D N+ VFVG+L +T
Sbjct: 61 AAAALAAMNG-----RKI-LG-----KEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 109
Query: 289 DEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
E ++ F+ +G++ ++ GK GFV F ++ AE A+ + G LGG+ IR
Sbjct: 110 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 169
Query: 343 LSWG--RSPSNKQAQ 355
+W + P+ K Q
Sbjct: 170 TNWATRKPPAPKSTQ 184
Score = 116 (45.9 bits), Expect = 0.00038, P = 0.00038
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG----FVQFADRSCAE 325
+DD T++VGNL VT+ + +LFSQ G K+ FV+F + A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 326 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
AL +NG ++ G+ ++++W +PS+++
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQK 90
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 90/302 (29%), Positives = 150/302 (49%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAASALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRI 121
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASY 261
A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT K S
Sbjct: 122 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST 181
Query: 262 QNSQVAQ-SDDD------PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG 314
S Q S DD P+N TV+ G + S +T++ +R+ FS +GQ++ +++ K
Sbjct: 182 YESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYS 241
Query: 315 FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGYAQGYEN 374
FV+F A A+ +NGT + G ++ WG+ + + NQ GY Q Y
Sbjct: 242 FVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETPDMISPVQQNQ-----IGYPQAYGQ 296
Query: 375 YG 376
+G
Sbjct: 297 WG 298
Score = 194 (73.4 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 59/204 (28%), Positives = 100/204 (49%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFYEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
A+ MNG R + +G K V ++ + +Q D N+ VFVG+L +T
Sbjct: 59 AASALAAMNG-----RKI-MG-----KEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 107
Query: 289 DEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
E ++ F+ +G++ ++ GK GFV F ++ AE A++ + G LGG+ IR
Sbjct: 108 TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 167
Query: 343 LSWG-RSPSNKQAQPDPNQWNAGY 365
+W R P ++ + N Y
Sbjct: 168 TNWATRKPPAPKSTYESNTKQLSY 191
Score = 120 (47.3 bits), Expect = 0.00013, P = 0.00013
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 325
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAA 60
Query: 326 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 SALAAMNGRKIMGKEVKVNWATTPSSQK 88
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 88/306 (28%), Positives = 158/306 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
RTL++G+L + E + F+ G + K+I + TG + Y F+EF A L
Sbjct: 9 RTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDT-TGN-DPYCFVEFYENRHAAAALA 66
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + ++ ++NWAS + +K+D + +FVGDL+ +++ ++ F A +
Sbjct: 67 AMNGRKILG--KDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAF-APFGKI 123
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG--------PATN 253
A+VV D TG++KGYGF+ F ++ + A+ +MNG + R +R P +N
Sbjct: 124 SDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSN 183
Query: 254 KKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 313
+ S+ + + + + P+N TV+ G + S ++D+ +R+ FS +GQ++ +++ K
Sbjct: 184 NEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEKGY 243
Query: 314 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK---QAQPDPNQWNAGYYGYAQ 370
FV+F A A+ +NGT + G ++ WG+ ++ Q P P Q N Y AQ
Sbjct: 244 SFVRFDSHEGAAHAIVSVNGTCIEGHTVKCYWGKETADMRSMQQMPMPQQ-NKPTYA-AQ 301
Query: 371 GYENYG 376
Y +G
Sbjct: 302 PYGQWG 307
Score = 199 (75.1 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 57/189 (30%), Positives = 99/189 (52%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
+D P T++VG+L+ DVT+ ++ + F P K K+++D TG Y FV F +
Sbjct: 5 EDQP-RTLYVGNLSRDVTEALILQVFSQIGPC-KSCKMILDT-TGNDP-YCFVEFYENRH 60
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
A+ MNG R + +G K + ++ ++ +Q D N+ VFVG+L ++
Sbjct: 61 AAAALAAMNG-----RKI-LG-----KDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEIS 109
Query: 289 DEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
+ +R F+ +G++ ++ GK GF+ F ++ AE A++ +NG LGG+ IR
Sbjct: 110 TDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIR 169
Query: 343 LSWG-RSPS 350
+W R PS
Sbjct: 170 TNWATRKPS 178
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 91/311 (29%), Positives = 152/311 (48%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRI 121
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASY 261
A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT K S
Sbjct: 122 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST 181
Query: 262 QNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG 314
S Q S P N TV+ G + S +T++ +R+ FS +GQ++ +++ K
Sbjct: 182 YESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYS 241
Query: 315 FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR------SPSNKQAQ----PDPNQWNAG 364
F++F+ A A+ +NGT + G ++ WG+ +P +Q Q P QW
Sbjct: 242 FIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPPAYGQWGQ- 300
Query: 365 YYGYAQGYENY 375
+YG AQ Y
Sbjct: 301 WYGNAQQIGQY 311
Score = 195 (73.7 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 59/204 (28%), Positives = 100/204 (49%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFHEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
A+ MNG R + +G K V ++ + +Q D N+ VFVG+L +T
Sbjct: 59 AAAALAAMNG-----RKI-MG-----KEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 107
Query: 289 DEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
E ++ F+ +G++ ++ GK GFV F ++ AE A++ + G LGG+ IR
Sbjct: 108 TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 167
Query: 343 LSWG-RSPSNKQAQPDPNQWNAGY 365
+W R P ++ + N Y
Sbjct: 168 TNWATRKPPAPKSTYESNTKQLSY 191
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 325
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAA 60
Query: 326 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 65/192 (33%), Positives = 115/192 (59%)
Query: 166 EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD 225
+++ D+ D ++++GDLA DVTD L F+ RYPS + A+V++D TG ++GYGFV+F
Sbjct: 106 QQQSDS-DLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFAS 164
Query: 226 ESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQ-SDDDPNNTTVFVGNLD 284
+ E+ +A+ +MNG + + +P+++ T+K+ S Q S + + DPNNT ++V LD
Sbjct: 165 DVEKDKALIDMNGFYINNKPIKVNNPTHKRLNS---QTSTIPDLTSTDPNNTAIYVSQLD 221
Query: 285 SIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344
+ + L+ +F YG++ ++K+ K FV F +R AE A LN +G +++
Sbjct: 222 HYIDEGVLQTIFGAYGEISYIKMLTNKFSAFVNFVNRESAEAAFG-LNNFPVGNTRLKVQ 280
Query: 345 WGRSPSNKQAQP 356
WG++ + P
Sbjct: 281 WGKNVAPPPKSP 292
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 259 (96.2 bits), Expect = 4.4e-31, Sum P(2) = 4.4e-31
Identities = 61/176 (34%), Positives = 100/176 (56%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
R++++G++ + E L F TG V + K+IR ++ YGF+ + R A +
Sbjct: 59 RSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAIL 114
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-TIFVGDLAADVTDYMLQETFRARYPS 200
+ NG + Q ++NWA + G+ R+DT H IFVGDL+ +VTD L ++F + S
Sbjct: 115 SLNGRHLFG--QPIKVNWA-YATGQ-REDTSSHFNIFVGDLSPEVTDATLYQSFSV-FSS 169
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
A+V+ D+ TGR++G+GFV F ++ + A+ EMNG + S+R +R AT T
Sbjct: 170 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGAT 225
Score = 148 (57.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 47/183 (25%), Positives = 82/183 (44%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D + +++VG++ VT+ +LQE F + P + D+ YGFV + D
Sbjct: 54 DPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDK-----SSYGFVHYFDRRS 108
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
A+ +NG +P+++ A Y Q +D ++ +FVG+L VT
Sbjct: 109 AALAILSLNGRHLFGQPIKVNWA---------YATGQ---REDTSSHFNIFVGDLSPEVT 156
Query: 289 DEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
D L + FS + ++ G+ GFV F ++ A+ A+ +NG L + IR
Sbjct: 157 DATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIR 216
Query: 343 LSW 345
+W
Sbjct: 217 CNW 219
Score = 117 (46.2 bits), Expect = 0.00036, P = 0.00036
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 272 DPNNT-TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC--GFVQFADRSCAEEAL 328
DP+ +V+VGN+ + VT+ L+E+F+ G + K+ + GFV + DR A A+
Sbjct: 54 DPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAI 113
Query: 329 RMLNGTQLGGQNIRLSWGRSPSNKQ 353
LNG L GQ I+++W + ++
Sbjct: 114 LSLNGRHLFGQPIKVNWAYATGQRE 138
Score = 105 (42.0 bits), Expect = 4.4e-31, Sum P(2) = 4.4e-31
Identities = 36/117 (30%), Positives = 52/117 (44%)
Query: 249 GPATNKKTVSASYQNSQVAQSDDDPNN---TTVFVGNLDSIVTDEHLRELFSQYGQLV-- 303
G + + T +S + + NN TTV+VGNL VT L F G V
Sbjct: 235 GKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIE 294
Query: 304 HVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ--LGGQNIRLSWGRSPSNKQAQPDP 358
V++ K GFV++ A A++M N TQ L + I+ SWG P+ +P
Sbjct: 295 EVRVQRDKGFGFVRYNTHPEAALAIQMGN-TQPYLFNRQIKCSWGNKPTPPGTASNP 350
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 93/316 (29%), Positives = 158/316 (50%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F G + K+I + T + Y F+EF A L
Sbjct: 8 KTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVD--TAGNDPYCFVEFFEHRHAAASLA 65
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 66 AMNGRKIMGKE--VKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAF-APFGRI 122
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV-SAS 260
A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT K A+
Sbjct: 123 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKAT 182
Query: 261 YQNSQVAQSDDD------PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG 314
Y+ + S D+ P+N TV+ G + + +T++ +R+ FS +GQ++ V++ K
Sbjct: 183 YETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPDKGYS 242
Query: 315 FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN-----KQAQPDPNQWNAGYYG-- 367
FV+F A A+ +NGT L G ++ WG+ ++ +Q Q P Q G+
Sbjct: 243 FVRFNSHESAAHAIVSVNGTSLEGHIVKCYWGKETTDMVSPMQQVQV-PQQSKVGFAAQP 301
Query: 368 YAQGYENYGYAAAAPQ 383
Y Q + YG A Q
Sbjct: 302 YGQWGQWYGNAQQISQ 317
Score = 202 (76.2 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 59/198 (29%), Positives = 98/198 (49%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
DD T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DDEQPKTLYVGNLSRDVTEALIMQLFGQIGPC-KSCKMIVD--TAGNDPYCFVEFFEHRH 59
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
++ MNG R + +G K V ++ S +Q D N+ VFVG+L +T
Sbjct: 60 AAASLAAMNG-----RKI-MG-----KEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEIT 108
Query: 289 DEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
+ +R F+ +G++ ++ GK GFV F ++ AE A++ + G LGG+ IR
Sbjct: 109 TDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 168
Query: 343 LSWG-RSPSNKQAQPDPN 359
+W R P +A + N
Sbjct: 169 TNWATRKPPAPKATYETN 186
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 82/263 (31%), Positives = 132/263 (50%)
Query: 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAAD 184
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+ +
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
+T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G + R
Sbjct: 125 ITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
Query: 245 PMRIGPATNKKTVSASYQNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFS 297
+R AT K S Q + Q + P N TV+ G + S +TD+ +R+ FS
Sbjct: 184 QIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 243
Query: 298 QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ--A 354
+GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP +
Sbjct: 244 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQ 303
Query: 355 QPDPNQWN--AGYYGYAQGYENY 375
Q D +QW + YG Q Y Y
Sbjct: 304 QVDYSQWGQWSQVYGNPQQYGQY 326
Score = 204 (76.9 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 59/205 (28%), Positives = 95/205 (46%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNKKTVSASYQNSQVAQ 268
R +R AT K S Q + Q
Sbjct: 183 RQIRTNWATRKPPAPKSTQETNTKQ 207
Score = 166 (63.5 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 53/200 (26%), Positives = 89/200 (44%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDE 226
DD T++VG+L+ DVT+ ++ + F P K K++ ++ R GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 227 SEQLRAMTEM---NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
S E + M G K V ++ + +Q D N+ VFVG+L
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMN-GRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDL 121
Query: 284 DSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLG 337
+T E ++ F+ +G++ ++ GK GFV F ++ AE A+ + G LG
Sbjct: 122 SPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLG 181
Query: 338 GQNIRLSWG--RSPSNKQAQ 355
G+ IR +W + P+ K Q
Sbjct: 182 GRQIRTNWATRKPPAPKSTQ 201
Score = 140 (54.3 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 144 NGTPMPNGEQNFRLNWASFG--AGEKRDDT---------------PDH-TIFVGDLAADV 185
G + G + R NWA+ A + +T P + T++ G +A+ +
Sbjct: 176 GGQWL--GGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 234 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 279
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 82/263 (31%), Positives = 132/263 (50%)
Query: 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAAD 184
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+ +
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
+T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G + R
Sbjct: 125 ITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
Query: 245 PMRIGPATNKKTVSASYQNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFS 297
+R AT K S Q + Q + P N TV+ G + S +TD+ +R+ FS
Sbjct: 184 QIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 243
Query: 298 QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ--A 354
+GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP +
Sbjct: 244 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQ 303
Query: 355 QPDPNQWN--AGYYGYAQGYENY 375
Q D +QW + YG Q Y Y
Sbjct: 304 QVDYSQWGQWSQVYGNPQQYGQY 326
Score = 204 (76.9 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 59/205 (28%), Positives = 95/205 (46%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNKKTVSASYQNSQVAQ 268
R +R AT K S Q + Q
Sbjct: 183 RQIRTNWATRKPPAPKSTQETNTKQ 207
Score = 166 (63.5 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 53/200 (26%), Positives = 89/200 (44%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDE 226
DD T++VG+L+ DVT+ ++ + F P K K++ ++ R GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 227 SEQLRAMTEM---NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
S E + M G K V ++ + +Q D N+ VFVG+L
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMN-GRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDL 121
Query: 284 DSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLG 337
+T E ++ F+ +G++ ++ GK GFV F ++ AE A+ + G LG
Sbjct: 122 SPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLG 181
Query: 338 GQNIRLSWG--RSPSNKQAQ 355
G+ IR +W + P+ K Q
Sbjct: 182 GRQIRTNWATRKPPAPKSTQ 201
Score = 140 (54.3 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 144 NGTPMPNGEQNFRLNWASFG--AGEKRDDT---------------PDH-TIFVGDLAADV 185
G + G + R NWA+ A + +T P + T++ G +A+ +
Sbjct: 176 GGQWL--GGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 234 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 82/263 (31%), Positives = 132/263 (50%)
Query: 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAAD 184
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+ +
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
+T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G + R
Sbjct: 125 ITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
Query: 245 PMRIGPATNKKTVSASYQNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFS 297
+R AT K S Q + Q + P N TV+ G + S +TD+ +R+ FS
Sbjct: 184 QIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 243
Query: 298 QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ--A 354
+GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP +
Sbjct: 244 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQ 303
Query: 355 QPDPNQWN--AGYYGYAQGYENY 375
Q D +QW + YG Q Y Y
Sbjct: 304 QVDYSQWGQWSQVYGNPQQYGQY 326
Score = 204 (76.9 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 59/205 (28%), Positives = 95/205 (46%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNKKTVSASYQNSQVAQ 268
R +R AT K S Q + Q
Sbjct: 183 RQIRTNWATRKPPAPKSTQETNTKQ 207
Score = 166 (63.5 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 53/200 (26%), Positives = 89/200 (44%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDE 226
DD T++VG+L+ DVT+ ++ + F P K K++ ++ R GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 227 SEQLRAMTEM---NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
S E + M G K V ++ + +Q D N+ VFVG+L
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMN-GRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDL 121
Query: 284 DSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLG 337
+T E ++ F+ +G++ ++ GK GFV F ++ AE A+ + G LG
Sbjct: 122 SPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLG 181
Query: 338 GQNIRLSWG--RSPSNKQAQ 355
G+ IR +W + P+ K Q
Sbjct: 182 GRQIRTNWATRKPPAPKSTQ 201
Score = 140 (54.3 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 144 NGTPMPNGEQNFRLNWASFG--AGEKRDDT---------------PDH-TIFVGDLAADV 185
G + G + R NWA+ A + +T P + T++ G +A+ +
Sbjct: 176 GGQWL--GGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 234 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 82/263 (31%), Positives = 132/263 (50%)
Query: 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAAD 184
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+ +
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
+T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G + R
Sbjct: 125 ITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
Query: 245 PMRIGPATNKKTVSASYQNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFS 297
+R AT K S Q + Q + P N TV+ G + S +TD+ +R+ FS
Sbjct: 184 QIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 243
Query: 298 QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ--A 354
+GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP +
Sbjct: 244 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQ 303
Query: 355 QPDPNQWN--AGYYGYAQGYENY 375
Q D +QW + YG Q Y Y
Sbjct: 304 QVDYSQWGQWSQVYGNPQQYGQY 326
Score = 204 (76.9 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 59/205 (28%), Positives = 95/205 (46%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNKKTVSASYQNSQVAQ 268
R +R AT K S Q + Q
Sbjct: 183 RQIRTNWATRKPPAPKSTQETNTKQ 207
Score = 166 (63.5 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 53/200 (26%), Positives = 89/200 (44%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDE 226
DD T++VG+L+ DVT+ ++ + F P K K++ ++ R GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 227 SEQLRAMTEM---NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
S E + M G K V ++ + +Q D N+ VFVG+L
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMN-GRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDL 121
Query: 284 DSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLG 337
+T E ++ F+ +G++ ++ GK GFV F ++ AE A+ + G LG
Sbjct: 122 SPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLG 181
Query: 338 GQNIRLSWG--RSPSNKQAQ 355
G+ IR +W + P+ K Q
Sbjct: 182 GRQIRTNWATRKPPAPKSTQ 201
Score = 140 (54.3 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 144 NGTPMPNGEQNFRLNWASFG--AGEKRDDT---------------PDH-TIFVGDLAADV 185
G + G + R NWA+ A + +T P + T++ G +A+ +
Sbjct: 176 GGQWL--GGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 234 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 82/263 (31%), Positives = 132/263 (50%)
Query: 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAAD 184
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+ +
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
+T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G + R
Sbjct: 125 ITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
Query: 245 PMRIGPATNKKTVSASYQNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFS 297
+R AT K S Q + Q + P N TV+ G + S +TD+ +R+ FS
Sbjct: 184 QIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 243
Query: 298 QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ--A 354
+GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP +
Sbjct: 244 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQ 303
Query: 355 QPDPNQWN--AGYYGYAQGYENY 375
Q D +QW + YG Q Y Y
Sbjct: 304 QVDYSQWGQWSQVYGNPQQYGQY 326
Score = 204 (76.9 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 59/205 (28%), Positives = 95/205 (46%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNKKTVSASYQNSQVAQ 268
R +R AT K S Q + Q
Sbjct: 183 RQIRTNWATRKPPAPKSTQENNTKQ 207
Score = 166 (63.5 bits), Expect = 7.7e-10, P = 7.7e-10
Identities = 53/200 (26%), Positives = 89/200 (44%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDE 226
DD T++VG+L+ DVT+ ++ + F P K K++ ++ R GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 227 SEQLRAMTEM---NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
S E + M G K V ++ + +Q D N+ VFVG+L
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMN-GRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDL 121
Query: 284 DSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLG 337
+T E ++ F+ +G++ ++ GK GFV F ++ AE A+ + G LG
Sbjct: 122 SPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLG 181
Query: 338 GQNIRLSWG--RSPSNKQAQ 355
G+ IR +W + P+ K Q
Sbjct: 182 GRQIRTNWATRKPPAPKSTQ 201
Score = 138 (53.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 144 NGTPMPNGEQNFRLNWASF------GAGEKR------DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ E +D +P + T++ G +A+ +
Sbjct: 176 GGQWL--GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 234 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 82/263 (31%), Positives = 132/263 (50%)
Query: 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAAD 184
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+ +
Sbjct: 66 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPE 123
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
+T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G + R
Sbjct: 124 ITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 182
Query: 245 PMRIGPATNKKTVSASYQNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFS 297
+R AT K S Q + Q + P N TV+ G + S +TD+ +R+ FS
Sbjct: 183 QIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 242
Query: 298 QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ--A 354
+GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP +
Sbjct: 243 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQ 302
Query: 355 QPDPNQWN--AGYYGYAQGYENY 375
Q D +QW + YG Q Y Y
Sbjct: 303 QVDYSQWGQWSQVYGNPQQYGQY 325
Score = 204 (76.9 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 59/205 (28%), Positives = 95/205 (46%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 5 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 64
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 65 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 122
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 123 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 181
Query: 244 RPMRIGPATNKKTVSASYQNSQVAQ 268
R +R AT K S Q + Q
Sbjct: 182 RQIRTNWATRKPPAPKSTQENNTKQ 206
Score = 166 (63.5 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 53/200 (26%), Positives = 89/200 (44%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDE 226
DD T++VG+L+ DVT+ ++ + F P K K++ ++ R GF
Sbjct: 3 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEQPDSRRVNSSVGFSVLQHT 61
Query: 227 SEQLRAMTEM---NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
S E + M G K V ++ + +Q D N+ VFVG+L
Sbjct: 62 SNDPYCFVEFYEHRDAAAALAAMN-GRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDL 120
Query: 284 DSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLG 337
+T E ++ F+ +G++ ++ GK GFV F ++ AE A+ + G LG
Sbjct: 121 SPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLG 180
Query: 338 GQNIRLSWG--RSPSNKQAQ 355
G+ IR +W + P+ K Q
Sbjct: 181 GRQIRTNWATRKPPAPKSTQ 200
Score = 138 (53.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 144 NGTPMPNGEQNFRLNWASF------GAGEKR------DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ E +D +P + T++ G +A+ +
Sbjct: 175 GGQWL--GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 232
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 233 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 278
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 82/263 (31%), Positives = 132/263 (50%)
Query: 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAAD 184
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+ +
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
+T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G + R
Sbjct: 125 ITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
Query: 245 PMRIGPATNKKTVSASYQNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFS 297
+R AT K S Q + Q + P N TV+ G + S +TD+ +R+ FS
Sbjct: 184 QIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 243
Query: 298 QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ--A 354
+GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP +
Sbjct: 244 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQ 303
Query: 355 QPDPNQWN--AGYYGYAQGYENY 375
Q D +QW + YG Q Y Y
Sbjct: 304 QVDYSQWGQWSQVYGNPQQYGQY 326
Score = 204 (76.9 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 59/205 (28%), Positives = 95/205 (46%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNKKTVSASYQNSQVAQ 268
R +R AT K S Q + Q
Sbjct: 183 RQIRTNWATRKPPAPKSTQENNTKQ 207
Score = 166 (63.5 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 53/200 (26%), Positives = 89/200 (44%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDE 226
DD T++VG+L+ DVT+ ++ + F P K K++ ++ R GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 227 SEQLRAMTEM---NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
S E + M G K V ++ + +Q D N+ VFVG+L
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMN-GRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDL 121
Query: 284 DSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLG 337
+T E ++ F+ +G++ ++ GK GFV F ++ AE A+ + G LG
Sbjct: 122 SPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLG 181
Query: 338 GQNIRLSWG--RSPSNKQAQ 355
G+ IR +W + P+ K Q
Sbjct: 182 GRQIRTNWATRKPPAPKSTQ 201
Score = 138 (53.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 144 NGTPMPNGEQNFRLNWASF------GAGEKR------DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ E +D +P + T++ G +A+ +
Sbjct: 176 GGQWL--GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 234 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 82/263 (31%), Positives = 132/263 (50%)
Query: 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAAD 184
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+ +
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
+T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G + R
Sbjct: 125 ITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
Query: 245 PMRIGPATNKKTVSASYQNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFS 297
+R AT K S Q + Q + P N TV+ G + S +TD+ +R+ FS
Sbjct: 184 QIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 243
Query: 298 QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ--A 354
+GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP +
Sbjct: 244 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQ 303
Query: 355 QPDPNQWN--AGYYGYAQGYENY 375
Q D +QW + YG Q Y Y
Sbjct: 304 QVDYSQWGQWSQVYGNPQQYGQY 326
Score = 204 (76.9 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 59/205 (28%), Positives = 95/205 (46%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNKKTVSASYQNSQVAQ 268
R +R AT K S Q + Q
Sbjct: 183 RQIRTNWATRKPPAPKSTQENNTKQ 207
Score = 166 (63.5 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 53/200 (26%), Positives = 89/200 (44%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDE 226
DD T++VG+L+ DVT+ ++ + F P K K++ ++ R GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 227 SEQLRAMTEM---NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
S E + M G K V ++ + +Q D N+ VFVG+L
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMN-GRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDL 121
Query: 284 DSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLG 337
+T E ++ F+ +G++ ++ GK GFV F ++ AE A+ + G LG
Sbjct: 122 SPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLG 181
Query: 338 GQNIRLSWG--RSPSNKQAQ 355
G+ IR +W + P+ K Q
Sbjct: 182 GRQIRTNWATRKPPAPKSTQ 201
Score = 138 (53.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 144 NGTPMPNGEQNFRLNWASF------GAGEKR------DD-----TPDH-TIFVGDLAADV 185
G + G + R NWA+ E +D +P + T++ G +A+ +
Sbjct: 176 GGQWL--GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
TD ++++TF S G + I R+ KGY FVRF A+ +NG
Sbjct: 234 TDQLMRQTF-----SPFGQIMEI-RVFPE-KGYSFVRFSTHESAAHAIVSVNG 279
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 82/264 (31%), Positives = 131/264 (49%)
Query: 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAAD 184
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+ +
Sbjct: 68 YCFVEFFEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPE 125
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
+T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G + R
Sbjct: 126 ITTDDIRAAF-APFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 184
Query: 245 PMRIGPATNKKTVSASYQNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFS 297
+R AT K S Q++ Q + P N TV+ G + S +T+ +R+ FS
Sbjct: 185 QIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGLTEHLMRQTFS 244
Query: 298 QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSN-KQAQ 355
+GQ++ +++ K F++F+ A A+ +NGT + G ++ WG+ SP K Q
Sbjct: 245 PFGQIMEIRVFPEKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMAKNVQ 304
Query: 356 PDP----NQWNAGYYGYAQGYENY 375
P QWN YG Q Y Y
Sbjct: 305 PMEYGQWGQWNQ-MYGNPQQYGQY 327
Score = 157 (60.3 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 57/212 (26%), Positives = 99/212 (46%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTK------G----- 217
D++ T++VG+L+ DVT+ ++ + F P K K++ ++ K G
Sbjct: 3 DESHPKTLYVGNLSRDVTENLILQLFTQIGPC-KSCKMITEQSDSSRKMNSSSIGFSVLQ 61
Query: 218 ------YGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDD 271
Y FV F + + A+ MNG R + +G K V ++ + +Q D
Sbjct: 62 HTSNDPYCFVEFFEHRDAAAALAAMNG-----RKI-LG-----KEVKVNWATTPSSQKKD 110
Query: 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAE 325
N+ VFVG+L +T + +R F+ +G++ ++ GK GFV F ++ AE
Sbjct: 111 TSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAE 170
Query: 326 EALRMLNGTQLGGQNIRLSWG--RSPSNKQAQ 355
A+ + G LGG+ IR +W + P+ K Q
Sbjct: 171 NAIVHMGGQWLGGRQIRTNWATRKPPAPKSVQ 202
Score = 138 (53.6 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 44/173 (25%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 117 VFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 176
Query: 144 NGTPMPNGEQNFRLNWASF-----------GAGEKRDD------TPDH-TIFVGDLAADV 185
G + G + R NWA+ A + R D +P + T++ G + + +
Sbjct: 177 GGQWL--GGRQIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGL 234
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
T++++++TF S G + I R+ KGY F+RF A+ +NG
Sbjct: 235 TEHLMRQTF-----SPFGQIMEI-RVFPE-KGYSFIRFSSHESAAHAIVSVNG 280
Score = 42 (19.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 345 WGRSPSNKQAQPDP--NQWNAGYYGY 368
+G PS QAQP NQ N G GY
Sbjct: 363 FGTQPS--QAQPGAVMNQANFGMAGY 386
>FB|FBgn0031607 [details] [associations]
symbol:CG15440 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
eggNOG:COG0724 GeneTree:ENSGT00510000047100 EMBL:AY089645
RefSeq:NP_608837.2 UniGene:Dm.4903 SMR:Q8SXG7 IntAct:Q8SXG7
MINT:MINT-300703 STRING:Q8SXG7 EnsemblMetazoa:FBtr0077454
GeneID:33652 KEGG:dme:Dmel_CG15440 UCSC:CG15440-RA
FlyBase:FBgn0031607 InParanoid:Q8SXG7 OMA:EREFSVW OrthoDB:EOG4F7M1N
ChiTaRS:CG15440 GenomeRNAi:33652 NextBio:784624 Uniprot:Q8SXG7
Length = 336
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 72/175 (41%), Positives = 106/175 (60%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
LW+G L+ +M E ++ F GE V+++RNK TG+ GY F+ FIS A +
Sbjct: 8 LWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHK 67
Query: 143 FNGTPMP--NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
NG P+P N FRLN AS + + + + +++VGDL++DV DY L + F +++ S
Sbjct: 68 LNGKPIPGTNPIVRFRLNSAS-NSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTS 126
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK 254
K AKV++D L G +KGYGFVRFG E EQ A+ +MNG + T+P++I A K
Sbjct: 127 IKTAKVILDSL-GFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPK 180
Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 58/214 (27%), Positives = 96/214 (44%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
+++G L + +T+ + FR +++ ++ TG GY FV F + L AM +
Sbjct: 8 LWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHK 67
Query: 236 MNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNT---TVFVGNLDSIVTDEHL 292
+NG +P+ P TN ++ + + S P N +V+VG+L S V D L
Sbjct: 68 LNG-----KPI---PGTNP---IVRFRLNSASNSYKLPGNEREFSVWVGDLSSDVDDYQL 116
Query: 293 RELFS-QYGQLVHVKI---PAG--KRCGFVQFADRSCAEEALRMLNG-TQLGGQNIRLSW 345
++FS ++ + K+ G K GFV+F + AL +NG LG + I++
Sbjct: 117 YKVFSSKFTSIKTAKVILDSLGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKIC- 175
Query: 346 GRSPSNKQAQPDPNQWNAGYYGYAQGYENYGYAA 379
A P P G G +G NYGY +
Sbjct: 176 -------NAVPKPKSELGGAVG--EGNTNYGYGS 200
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 75/207 (36%), Positives = 115/207 (55%)
Query: 157 LNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRT 215
L+ AS E R DT H +FVGDL+ DV++ +L+ TF ++ AKV+ D T ++
Sbjct: 207 LHSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTF-TKFGEVSEAKVIRDVQTQKS 265
Query: 216 KGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNS--QVAQSDDDP 273
KGYGFV F ++ A+ MNG + R +R A K + + + QV S
Sbjct: 266 KGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTK-A 324
Query: 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG 333
+NT+V+VGN+ TD LR+LFS YG + V+I +R FV++ + CA +A+ +NG
Sbjct: 325 DNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMNG 384
Query: 334 TQLGGQNIRLSWGRSPS--NKQAQPDP 358
++ G +R SWGR+ + N+ P P
Sbjct: 385 KEMAGNQVRCSWGRTQAVPNQALNPLP 411
Score = 170 (64.9 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 53/167 (31%), Positives = 86/167 (51%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + L + F GEV KVIR+ QT + +GYGF+ F ++ AE +
Sbjct: 227 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 286
Query: 144 NGTPMPNGEQNFRLNWASF-GAGEKRDDTP----------DHT-IFVGDLAADVTDYMLQ 191
NG + G++ R NWA+ + E RD D+T ++VG+++ TD L+
Sbjct: 287 NGKWI--GKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLR 344
Query: 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
+ F ST G + R+ +T+ Y FVR+ + +A+ EMNG
Sbjct: 345 DLF-----STYGDIAEV-RIF-KTQRYAFVRYEKKECATKAIMEMNG 384
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 92/320 (28%), Positives = 146/320 (45%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFR-LNWASFGAGEKRDDT-------PDHT-IFVGDLAADVTDYMLQE 192
NG + E S + T DH +FVGDL+ ++T ++
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKA 124
Query: 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT
Sbjct: 125 AF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Query: 253 NKKTVSASYQNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
K S S Q S PNN TV+ G + S +T++ +R+ FS +GQ++ +
Sbjct: 184 RKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEI 243
Query: 306 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR------SPSNKQAQ---- 355
++ K FV+F+ A A+ +NGT + G ++ WG+ +P +Q Q
Sbjct: 244 RVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYP 303
Query: 356 PDPNQWNAGYYGYAQGYENY 375
P QW +YG AQ Y
Sbjct: 304 PTYGQWGQ-WYGNAQQIGQY 322
Score = 207 (77.9 bits), Expect = 7.5e-15, P = 7.5e-15
Identities = 56/204 (27%), Positives = 99/204 (48%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFHEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
A+ MNG + +++ AT + +S V + ++ VFVG+L +T
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT 118
Query: 289 DEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
E ++ F+ +G++ ++ GK GFV F ++ AE A++ + G LGG+ IR
Sbjct: 119 TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 343 LSWG-RSPSNKQAQPDPNQWNAGY 365
+W R P ++ + N Y
Sbjct: 179 TNWATRKPPAPKSTYESNTKQLSY 202
Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 325
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAA 60
Query: 326 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>ZFIN|ZDB-GENE-050522-502 [details] [associations]
symbol:trnau1ap "tRNA selenocysteine 1 associated
protein 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050522-502 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00510000047100 CTD:54952
HOGENOM:HOG000234338 HOVERGEN:HBG056959 OrthoDB:EOG44BB34
EMBL:BX530067 EMBL:BC095331 IPI:IPI00607273 RefSeq:NP_001018445.1
UniGene:Dr.107924 ProteinModelPortal:Q503H1 SMR:Q503H1
STRING:Q503H1 Ensembl:ENSDART00000052292 GeneID:553636
KEGG:dre:553636 InParanoid:Q503H1 OMA:NVTEANE NextBio:20880371
Bgee:Q503H1 Uniprot:Q503H1
Length = 314
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 67/201 (33%), Positives = 110/201 (54%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ +LW+G+L+ +MDE ++ FA GE VV +++IR+K TG+ GYGF+E ER
Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERC 60
Query: 140 LQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
L+ NG P+P + F+L+ +++G K+ ++ ++FV DL DV D ML E F
Sbjct: 61 LRKVNGKPLPGATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDDGMLYEFFHYH 117
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPATNKKT 256
+ S K+V+D G +K GFV F E EQ RA+ ++ G + +R+ A+++
Sbjct: 118 FSSCCSGKIVLDA-NGHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSRVN 176
Query: 257 VSASYQNSQVAQSDDDPNNTT 277
+Q+ Q D N +
Sbjct: 177 KKKESSENQIWQYHSDSKNAS 197
Score = 146 (56.5 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 54/196 (27%), Positives = 90/196 (45%)
Query: 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233
+++++G+L + + + F + +++ D++TG+ GYGFV D++ R +
Sbjct: 2 NSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCL 61
Query: 234 TEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLR 293
++NG +P+ G AT K S N + + ++FV +L V D L
Sbjct: 62 RKVNG-----KPLP-G-ATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDDGMLY 111
Query: 294 ELFSQY------GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQNIRLSWG 346
E F + G++V K CGFV F + AL L G T LG + +RLS
Sbjct: 112 EFFHYHFSSCCSGKIVLDANGHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLA 171
Query: 347 RSPSNKQAQPDPNQ-W 361
S NK+ + NQ W
Sbjct: 172 SSRVNKKKESSENQIW 187
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 93/320 (29%), Positives = 148/320 (46%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFR-LNWASFGAGEKRDDT-------PDHT-IFVGDLAADVTDYMLQE 192
NG + E S + T DH +FVGDL+ ++T ++
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKA 124
Query: 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT
Sbjct: 125 AF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Query: 253 NKKTVSASYQNSQVAQ-SDDD------PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
K S S Q S D+ P+N TV+ G + S +T++ +R+ FS +GQ++ +
Sbjct: 184 RKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEI 243
Query: 306 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR------SPSNKQAQ---P 356
++ K FV+F A A+ +NGT + G ++ WG+ +P +Q Q P
Sbjct: 244 RVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYP 303
Query: 357 DP-NQWNAGYYGYAQGYENY 375
P QW +YG AQ Y
Sbjct: 304 QPYGQWGQ-WYGNAQQIGQY 322
Score = 207 (77.9 bits), Expect = 7.5e-15, P = 7.5e-15
Identities = 56/204 (27%), Positives = 99/204 (48%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFHEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
A+ MNG + +++ AT + +S V + ++ VFVG+L +T
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT 118
Query: 289 DEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
E ++ F+ +G++ ++ GK GFV F ++ AE A++ + G LGG+ IR
Sbjct: 119 TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 343 LSWG-RSPSNKQAQPDPNQWNAGY 365
+W R P ++ + N Y
Sbjct: 179 TNWATRKPPAPKSTYESNTKQLSY 202
Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 325
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAA 60
Query: 326 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 223 (83.6 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 56/173 (32%), Positives = 84/173 (48%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
R L++G+L + E L F G + +K++ +K + Y F+E+ A LQ
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVN-YAFVEYHQSHDANIALQ 133
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
T NG + N ++NWA DDT +FVGDL +V D L+ F+ +PS
Sbjct: 134 TLNGKQIENNI--VKINWAFQSQQSSSDDT--FNLFVGDLNVNVDDETLRNAFKD-FPSY 188
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
V+ D TG ++GYGFV F + + AM M G + RP+RI A +
Sbjct: 189 LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
Score = 163 (62.4 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 57/214 (26%), Positives = 98/214 (45%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
+T D ++VG+L +T+ +L++ F+ P K++ID+ + Y FV + +
Sbjct: 71 ETSDRVLYVGNLDKAITEDILKQYFQVGGPIAN-IKIMIDK-NNKNVNYAFVEYHQSHDA 128
Query: 230 LRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTD 289
A+ +NG ++I A +Q SQ + SDD N +FVG+L+ V D
Sbjct: 129 NIALQTLNGKQIENNIVKINWA---------FQ-SQQSSSDDTFN---LFVGDLNVNVDD 175
Query: 290 EHLRELFSQYGQLV--HV----KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343
E LR F + + HV + + + GFV F + A+ A+ + G L G+ +R+
Sbjct: 176 ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 235
Query: 344 SWGR---SPSNKQAQPDPNQWNAGYYGYAQGYEN 374
+W + +N Q N N G+ Q N
Sbjct: 236 NWAAKRDNNNNNNYQQRRNYGNNNRGGFRQYNSN 269
Score = 109 (43.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 332
P TT ++GN+ T+ L LF +G ++ K K C F+++ A + L
Sbjct: 338 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALA 397
Query: 333 GTQLGGQNIRLSWGRSPSNKQAQ 355
G+N+R WG+ SN Q
Sbjct: 398 NFPFQGRNLRTGWGKERSNFMPQ 420
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 92/319 (28%), Positives = 147/319 (46%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFR-LNWASFGAGEKRDDT-------PDHT-IFVGDLAADVTDYMLQE 192
NG + E S + T DH +FVGDL+ ++T ++
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKA 124
Query: 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT
Sbjct: 125 AF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Query: 253 NKKTVSASYQNSQVAQ-SDDD------PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
K S S Q S D+ P+N TV+ G + S +T++ +R+ FS +GQ++ +
Sbjct: 184 RKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEI 243
Query: 306 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR------SP--SNKQAQPD 357
++ K FV+F A A+ +NGT + G ++ WG+ +P N+ P
Sbjct: 244 RVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQNQIGYPQ 303
Query: 358 P-NQWNAGYYGYAQGYENY 375
P QW +YG AQ Y
Sbjct: 304 PYGQWGQ-WYGNAQQIGQY 321
Score = 207 (77.9 bits), Expect = 7.5e-15, P = 7.5e-15
Identities = 56/204 (27%), Positives = 99/204 (48%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFHEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
A+ MNG + +++ AT + +S V + ++ VFVG+L +T
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT 118
Query: 289 DEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
E ++ F+ +G++ ++ GK GFV F ++ AE A++ + G LGG+ IR
Sbjct: 119 TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 343 LSWG-RSPSNKQAQPDPNQWNAGY 365
+W R P ++ + N Y
Sbjct: 179 TNWATRKPPAPKSTYESNTKQLSY 202
Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 325
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAA 60
Query: 326 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 90/314 (28%), Positives = 144/314 (45%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFR-LNWASFGAGEKRDDT-------PDHT-IFVGDLAADVTDYMLQE 192
NG + E S + T DH +FVGDL+ ++T ++
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKA 124
Query: 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT
Sbjct: 125 AF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Query: 253 NKKTVSASYQNSQVAQ-SDDD------PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
K S S Q S D+ P+N TV+ G + S +T++ +R+ FS +GQ++ +
Sbjct: 184 RKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEI 243
Query: 306 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGY 365
++ K FV+F A A+ +NGT + G ++ WG+ + P Q GY
Sbjct: 244 RVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLD-MINPVQQQNQIGY 302
Query: 366 -YGYAQGYENYGYA 378
Y Q + YG A
Sbjct: 303 PQAYGQWGQWYGNA 316
Score = 206 (77.6 bits), Expect = 9.9e-15, P = 9.9e-15
Identities = 56/204 (27%), Positives = 99/204 (48%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFYEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
A+ MNG + +++ AT + +S V + ++ VFVG+L +T
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT 118
Query: 289 DEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
E ++ F+ +G++ ++ GK GFV F ++ AE A++ + G LGG+ IR
Sbjct: 119 TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 343 LSWG-RSPSNKQAQPDPNQWNAGY 365
+W R P ++ + N Y
Sbjct: 179 TNWATRKPPAPKSTYESNTKQLSY 202
Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 325
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAA 60
Query: 326 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 90/314 (28%), Positives = 144/314 (45%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFR-LNWASFGAGEKRDDT-------PDHT-IFVGDLAADVTDYMLQE 192
NG + E S + T DH +FVGDL+ ++T ++
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKA 124
Query: 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT
Sbjct: 125 AF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Query: 253 NKKTVSASYQNSQVAQ-SDDD------PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
K S S Q S D+ P+N TV+ G + S +T++ +R+ FS +GQ++ +
Sbjct: 184 RKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEI 243
Query: 306 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGY 365
++ K FV+F A A+ +NGT + G ++ WG+ + P Q GY
Sbjct: 244 RVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLD-MINPVQQQNQIGY 302
Query: 366 -YGYAQGYENYGYA 378
Y Q + YG A
Sbjct: 303 PQAYGQWGQWYGNA 316
Score = 206 (77.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 56/204 (27%), Positives = 99/204 (48%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFYEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
A+ MNG + +++ AT + +S V + ++ VFVG+L +T
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT 118
Query: 289 DEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
E ++ F+ +G++ ++ GK GFV F ++ AE A++ + G LGG+ IR
Sbjct: 119 TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 343 LSWG-RSPSNKQAQPDPNQWNAGY 365
+W R P ++ + N Y
Sbjct: 179 TNWATRKPPAPKSTYESNTKQLSY 202
Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 325
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAA 60
Query: 326 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 90/320 (28%), Positives = 145/320 (45%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 60
Query: 142 TFNGTPMPNGEQNFR-LNWASFGAGEKRDDT-------PDHT-IFVGDLAADVTDYMLQE 192
NG + E S + T DH +FVGDL+ ++T ++
Sbjct: 61 AMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKA 120
Query: 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT
Sbjct: 121 AF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 179
Query: 253 NKKTVSASYQNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
K S S Q S P N TV+ G + S +T++ +R+ FS +GQ++ +
Sbjct: 180 RKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEI 239
Query: 306 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR------SPSNKQAQ---- 355
++ K F++F+ A A+ +NGT + G ++ WG+ +P +Q Q
Sbjct: 240 RVFPDKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYP 299
Query: 356 PDPNQWNAGYYGYAQGYENY 375
P QW +YG AQ Y
Sbjct: 300 PAYGQWGQ-WYGNAQQIGQY 318
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 224 (83.9 bits), Expect = 2.8e-25, Sum P(2) = 2.8e-25
Identities = 58/189 (30%), Positives = 97/189 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ L++G+L E + F+ G V +K++ +K Y FIE+ + A+ L
Sbjct: 79 KILYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGFN-YAFIEYDTNEVADMAL 137
Query: 141 QTFNGTPMPNGEQNFRLNWA----SFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
T NG + + E ++NWA + + P IFVGDL+ +V D L+ F +
Sbjct: 138 NTLNGRLVDDVE--IKVNWAFQSAAIAGNPNNTEEPLFNIFVGDLSPEVNDEGLRNAF-S 194
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
++ S K A V+ D T R++GYGFV FG++S+ A+ MNG + R +R A++K+
Sbjct: 195 KFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHKQQ 254
Query: 257 VSASYQNSQ 265
+ N+Q
Sbjct: 255 QQQQHYNNQ 263
Score = 186 (70.5 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 67/230 (29%), Positives = 109/230 (47%)
Query: 156 RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRT 215
++N AS G + + + ++VG+L ++ +QE F K K++ D+
Sbjct: 63 QVNAASAKEGGR--EVSNKILYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGF 120
Query: 216 KGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNN 275
Y F+ + A+ +NG R+ K V+ ++Q++ +A +PNN
Sbjct: 121 N-YAFIEYDTNEVADMALNTLNG--------RLVDDVEIK-VNWAFQSAAIA---GNPNN 167
Query: 276 T-----TVFVGNLDSIVTDEHLRELFSQYGQL--VHV----KIPAGKRCGFVQFADRSCA 324
T +FVG+L V DE LR FS++ L HV + + GFV F ++S A
Sbjct: 168 TEEPLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDA 227
Query: 325 EEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGYAQGYEN 374
E AL+ +NG L G+ IR +W +Q Q NQ + G GY++GY N
Sbjct: 228 ELALQTMNGEWLCGRAIRCNWASHKQQQQQQHYNNQ-HGG--GYSRGYRN 274
Score = 106 (42.4 bits), Expect = 2.8e-25, Sum P(2) = 2.8e-25
Identities = 27/94 (28%), Positives = 42/94 (44%)
Query: 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ 335
TTV++GN+ + L L +G +V K + C FV++ A A+ L G
Sbjct: 412 TTVYLGNIAHFTQQQELIPLLQNFGFIVDFKFHPERGCAFVKYDTHERAALAIIQLAGFN 471
Query: 336 LGGQNIRLSWGRS-PSNKQAQP-DPNQWNAGYYG 367
L G+ ++ WG+ P Q P + N YG
Sbjct: 472 LNGRPLKCGWGKERPPQFQNFPRNGNMHQVPMYG 505
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 73/243 (30%), Positives = 125/243 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRI 121
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASY 261
A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT K S
Sbjct: 122 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST 181
Query: 262 QNSQVAQ-SDDD------PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG 314
S Q S D+ P+N TV+ G + S +T++ +R+ FS +GQ++ +++ K
Sbjct: 182 YESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYS 241
Query: 315 FVQ 317
FV+
Sbjct: 242 FVR 244
Score = 195 (73.7 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 59/204 (28%), Positives = 100/204 (49%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFHEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
A+ MNG R + +G K V ++ + +Q D N+ VFVG+L +T
Sbjct: 59 AAAALAAMNG-----RKI-MG-----KEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 107
Query: 289 DEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
E ++ F+ +G++ ++ GK GFV F ++ AE A++ + G LGG+ IR
Sbjct: 108 TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 167
Query: 343 LSWG-RSPSNKQAQPDPNQWNAGY 365
+W R P ++ + N Y
Sbjct: 168 TNWATRKPPAPKSTYESNTKQLSY 191
Score = 119 (46.9 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 325
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAA 60
Query: 326 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 71/243 (29%), Positives = 122/243 (50%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 60
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 61 AMNGRKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRI 117
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASY 261
A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT K S
Sbjct: 118 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST 177
Query: 262 QNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG 314
S Q S P N TV+ G + S +T++ +R+ FS +GQ++ +++ K
Sbjct: 178 YESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYS 237
Query: 315 FVQ 317
F++
Sbjct: 238 FIR 240
Score = 191 (72.3 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 57/198 (28%), Positives = 97/198 (48%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F + A+
Sbjct: 4 TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 60
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
MNG R + +G K V ++ + +Q D N+ VFVG+L +T E ++
Sbjct: 61 AMNG-----RKI-MG-----KEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKA 109
Query: 295 LFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG-R 347
F+ +G++ ++ GK GFV F ++ AE A++ + G LGG+ IR +W R
Sbjct: 110 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 169
Query: 348 SPSNKQAQPDPNQWNAGY 365
P ++ + N Y
Sbjct: 170 KPPAPKSTYESNTKQLSY 187
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 285 (105.4 bits), Expect = 3.8e-24, P = 3.8e-24
Identities = 83/287 (28%), Positives = 139/287 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ L++ +L +D L+ F+ G +V+ KV + GQ GYGF++F + A+ +
Sbjct: 133 VGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAI 191
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH----TIFVGDLAADVTDYMLQETFRA 196
+ NG + N +Q F F E+R+ D ++V +L+ TD L+ TF
Sbjct: 192 EKLNGKVL-NDKQIFV---GPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTF-G 246
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
+Y S A V+ D G+++ +GFV F + + RA+ +NG + +G A K
Sbjct: 247 QYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSE 305
Query: 257 VSASYQNSQVAQSDDDPNN---TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAG 310
S D N ++V NLD VTDE LRELF+++G + K+ P+G
Sbjct: 306 RELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSG 365
Query: 311 --KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
K GFV F+ S A L +NG +GG+ + ++ + ++A+
Sbjct: 366 TSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAK 412
Score = 268 (99.4 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 78/282 (27%), Positives = 138/282 (48%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
G + +L++GDL + + ++ L F +VV+V+V R+ T GYG++ + + AE+
Sbjct: 43 GALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEK 102
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
+Q N + + NG+ R+ ++S + +R + +FV +L V + L E F
Sbjct: 103 AMQKLNYSYL-NGKM-IRITYSSRDSSARRSGVGN--LFVKNLDKSVDNKTLHEAFSG-C 157
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258
+ KV D + G+++GYGFV+F E A+ ++NG + + + +GP K+
Sbjct: 158 GTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKE--- 213
Query: 259 ASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL---VHVKIPAGK-RC- 313
+ A D T V+V NL TD+ L+ F QYG + V ++ GK RC
Sbjct: 214 ---ERESAA---DKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCF 267
Query: 314 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
GFV F + A A+ LNG + + + + S ++ +
Sbjct: 268 GFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 309
Score = 143 (55.4 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 55/200 (27%), Positives = 88/200 (44%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ +L + L T F G + + V+R+ G+ +GF+ F + A R ++
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEAL 285
Query: 144 NGTPMPN-----G----------EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDY 188
NG + G E + R S G K D ++V +L VTD
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGL---NLYVKNLDDTVTDE 342
Query: 189 MLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
L+E F A + + KV+ D +G +KG GFV F SE R + EMNG +P+ +
Sbjct: 343 KLRELF-AEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYV 400
Query: 249 GPATNKKTVSASYQNSQVAQ 268
A K+ A Q +Q +Q
Sbjct: 401 ALAQRKEERRAKLQ-AQFSQ 419
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 80/278 (28%), Positives = 143/278 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V+++++ R++ T + GY ++ F+ A A++ L T
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ + RL W+ A +R + +F+ +L + + L E F A +
Sbjct: 71 MN-FDIIKGK-SIRLMWSQRDAYLRRSGIGN--VFIKNLDKSIDNKTLYEHFSA-FGKIL 125
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
+KV+ D G +KGY FV F ++S RA+ EMNG + +G N+K A +
Sbjct: 126 SSKVMSDD-QG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELR 183
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
S+ ++ T V++ N + DE L+++FS+YG+ + VK+ +GK GFV
Sbjct: 184 -SKASEF------TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVS 236
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
F A++A+ +NG + GQ I + + +QA+
Sbjct: 237 FDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274
Score = 234 (87.4 bits), Expect = 1.8e-19, P = 1.8e-19
Identities = 73/274 (26%), Positives = 135/274 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
I ++I +L +D L F+ G++++ KV+ + Q G +GY F+ F +++ A+R +
Sbjct: 97 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ-GS-KGYAFVHFQNQSAADRAI 154
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + G + F R E R + T +++ + D+ D L++ F ++
Sbjct: 155 EEMNGKLL-KGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVF-SK 212
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y T KV+ D +G++KG+GFV F +A+ EMNG + + + +G A K
Sbjct: 213 YGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVER 271
Query: 258 SASYQN--SQVAQSD-DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAGKR 312
A + Q+ + +++ NLD + DE LR FS +G + VK+ G+
Sbjct: 272 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 331
Query: 313 CGF--VQFADRSCAEEALRMLNGTQLGGQNIRLS 344
GF + F+ A +A+ +NG LG + + ++
Sbjct: 332 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIA 365
Score = 143 (55.4 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 48/185 (25%), Positives = 89/185 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G+ ++VKV+ + +G+ +G+GF+ F S A++
Sbjct: 188 EFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKA 246
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRD---DTPDHTIFVGDLAADVT 186
++ NG + NG+ F R E KR+ +++ +L +
Sbjct: 247 VEEMNGRDI-NGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTID 305
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L+ F + + S KV+ + G++KG+G + F + +AMTEMNG ++P+
Sbjct: 306 DEKLRNEFSS-FGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPL 362
Query: 247 RIGPA 251
I A
Sbjct: 363 SIALA 367
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 271 (100.5 bits), Expect = 2.5e-23, P = 2.5e-23
Identities = 80/278 (28%), Positives = 143/278 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V+++++ R++ T + GY ++ F+ A A++ L T
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ + RL W+ A +R + +F+ +L + + L E F A +
Sbjct: 129 MN-FDIIKGK-SIRLMWSQRDAYLRRSGIGN--VFIKNLDKSIDNKTLYEHFSA-FGKIL 183
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
+KV+ D G +KGY FV F ++S RA+ EMNG + +G N+K A +
Sbjct: 184 SSKVMSDD-QG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELR 241
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
S+ ++ T V++ N + DE L+++FS+YG+ + VK+ +GK GFV
Sbjct: 242 -SKASEF------TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVS 294
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
F A++A+ +NG + GQ I + + +QA+
Sbjct: 295 FDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
Score = 234 (87.4 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 73/274 (26%), Positives = 135/274 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
I ++I +L +D L F+ G++++ KV+ + Q G +GY F+ F +++ A+R +
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ-GS-KGYAFVHFQNQSAADRAI 212
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + G + F R E R + T +++ + D+ D L++ F ++
Sbjct: 213 EEMNGKLL-KGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVF-SK 270
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y T KV+ D +G++KG+GFV F +A+ EMNG + + + +G A K
Sbjct: 271 YGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVER 329
Query: 258 SASYQN--SQVAQSD-DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAGKR 312
A + Q+ + +++ NLD + DE LR FS +G + VK+ G+
Sbjct: 330 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 313 CGF--VQFADRSCAEEALRMLNGTQLGGQNIRLS 344
GF + F+ A +A+ +NG LG + + ++
Sbjct: 390 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIA 423
Score = 143 (55.4 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 48/185 (25%), Positives = 89/185 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G+ ++VKV+ + +G+ +G+GF+ F S A++
Sbjct: 246 EFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKA 304
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRD---DTPDHTIFVGDLAADVT 186
++ NG + NG+ F R E KR+ +++ +L +
Sbjct: 305 VEEMNGRDI-NGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTID 363
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L+ F + + S KV+ + G++KG+G + F + +AMTEMNG ++P+
Sbjct: 364 DEKLRNEFSS-FGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPL 420
Query: 247 RIGPA 251
I A
Sbjct: 421 SIALA 425
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 276 (102.2 bits), Expect = 3.3e-23, P = 3.3e-23
Identities = 79/278 (28%), Positives = 140/278 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 73 MN-FDVVKGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 127
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGY FV F + RA+ +MNG+ + R + +G ++K A
Sbjct: 128 SCKVVCDE-NG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMG 185
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + N V++ N + D+ L+ELF +YG+ + VK+ P GK GFV
Sbjct: 186 ----AKAKEFTN---VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVS 238
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
+ A +A+ +NGT+L G+ + + + +QA+
Sbjct: 239 YEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAE 276
Score = 233 (87.1 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 71/284 (25%), Positives = 135/284 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A+R +
Sbjct: 99 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQDAADRAI 156
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 157 EKMNGMLL-NDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFD-K 214
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y T KV+ D TG+++G+GFV + + +A+ EMNG + + + +G A K
Sbjct: 215 YGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMER 273
Query: 258 SASYQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----G 310
A + Q+ Q +++ NLD + DE LR+ FS +G + K+
Sbjct: 274 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS 333
Query: 311 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 334 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 377
Score = 169 (64.5 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 53/190 (27%), Positives = 90/190 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL D+T+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 10 PMASLYVGDLHPDITEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 68
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V VF+ NLD + ++
Sbjct: 69 ALDTMNFDVVKGKPIRI--MWSQR--DPSLRKSGVGN---------VFIKNLDKSIDNKA 115
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K FV F + A+ A+ +NG L + + + GR
Sbjct: 116 LYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV--GR 173
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 174 FKSRKEREAE 183
Score = 167 (63.8 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 55/197 (27%), Positives = 94/197 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G+ ++VKV+ + TG+ G+GF+ + A +
Sbjct: 190 EFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKA 248
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NGT + NG+ F R E KR + I ++ +L +
Sbjct: 249 VEEMNGTEL-NGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 307
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 308 DEKLRKEF-SPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 364
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 365 YVALAQRKEERKAHLTN 381
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 274 (101.5 bits), Expect = 5.3e-23, P = 5.3e-23
Identities = 80/278 (28%), Positives = 142/278 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + N V++ N V DE+L+ELFSQ+G+ + VK+ P+GK GFV
Sbjct: 185 ----AKAKEFTN---VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
+ A +A+ +NG ++ G+ I + + +QA+
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 222 (83.2 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 70/284 (24%), Positives = 136/284 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D +G++KG+GFV + + +A+ EMNG S + + +G A K
Sbjct: 214 FGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVER 272
Query: 258 SASYQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----G 310
A + Q+ Q +++ NLD + DE LR+ FS +G + K+
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 311 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 173 (66.0 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 54/190 (28%), Positives = 92/190 (48%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V VF+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPIRI--MWSQR--DPSLRKSGVGN---------VFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K FV F + A++A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 157 (60.3 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 52/197 (26%), Positives = 96/197 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG + +G+ F R E KR + I ++ +L +
Sbjct: 248 VEEMNGKEI-SGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERKAHLTN 380
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 273 (101.2 bits), Expect = 6.8e-23, P = 6.8e-23
Identities = 80/278 (28%), Positives = 142/278 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP---AGKR--CGFVQ 317
A++ + N V++ N V DE+LRELFSQ+G+ + VK+ +GK GFV
Sbjct: 185 ----AKAKEFTN---VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
+ A +A+ +NG ++ G++I + + +QA+
Sbjct: 238 YEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAE 275
Score = 222 (83.2 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 70/284 (24%), Positives = 135/284 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A + +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAANKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D +G++KG+GFV + + +A+ EMNG S + + +G A K
Sbjct: 214 FGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVER 272
Query: 258 SASYQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----G 310
A + Q+ Q +++ NLD + DE LR+ FS +G + K+
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 311 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 171 (65.3 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 54/190 (28%), Positives = 91/190 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V VF+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPIRI--MWSQR--DPSLRKSGVGN---------VFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K FV F + A +A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 161 (61.7 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 53/197 (26%), Positives = 96/197 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG M +G+ F R E KR + I ++ +L +
Sbjct: 248 VEEMNGKEM-SGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERKAHLTN 380
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 273 (101.2 bits), Expect = 7.5e-23, P = 7.5e-23
Identities = 80/278 (28%), Positives = 142/278 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP---AGKR--CGFVQ 317
A++ + N V++ N V DE+LRELFSQ+G+ + VK+ +GK GFV
Sbjct: 185 ----AKAKEFTN---VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
+ A +A+ +NG ++ G++I + + +QA+
Sbjct: 238 YEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAE 275
Score = 222 (83.2 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 70/284 (24%), Positives = 135/284 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A + +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAANKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D +G++KG+GFV + + +A+ EMNG S + + +G A K
Sbjct: 214 FGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVER 272
Query: 258 SASYQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----G 310
A + Q+ Q +++ NLD + DE LR+ FS +G + K+
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 311 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 171 (65.3 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 54/190 (28%), Positives = 91/190 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V VF+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPIRI--MWSQR--DPSLRKSGVGN---------VFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K FV F + A +A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 161 (61.7 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 53/197 (26%), Positives = 96/197 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG M +G+ F R E KR + I ++ +L +
Sbjct: 248 VEEMNGKEM-SGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERKAHLTN 380
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 77/278 (27%), Positives = 136/278 (48%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F G V+++++ R+ + + GYG++ F+ A++ L+T
Sbjct: 11 SLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALET 70
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ + RL W+ A ++ + +F+ +L + + L E F + +
Sbjct: 71 MN-FDLIKGK-SIRLMWSQRDACLRKSGIGN--VFIKNLDKSIDNKTLYEHF-SPFGKIM 125
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
+KV+ D G +KGYGFV + D+ RA+ EMNG + + ++K A +
Sbjct: 126 SSKVMTDE-EG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELR 183
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGK--RCGFVQ 317
T V++ N + DE LR +FS+YGQ + VK+ +GK R GFV
Sbjct: 184 EKPA-------EFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVS 236
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
F A+ A+ +NG + GQ I + + +QA+
Sbjct: 237 FDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAE 274
Score = 226 (84.6 bits), Expect = 3.1e-18, P = 3.1e-18
Identities = 70/276 (25%), Positives = 134/276 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
I ++I +L +D L F+ G++++ KV+ +++ G +GYGF+ + + A+R +
Sbjct: 97 IGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEE-GS-KGYGFVHYQDQRAADRAI 154
Query: 141 QTFNGTPMPNGEQNF-RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARY 198
+ NG + + R E R+ + T +++ + D+ D L+ F ++Y
Sbjct: 155 EEMNGKLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVF-SKY 213
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258
T KV+ D +G++K +GFV F A+ +MNG + + + +G A K
Sbjct: 214 GQTLSVKVMKDA-SGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQ 272
Query: 259 ASYQN--SQVAQSDDDPNNTT-VFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAGKRC 313
A + Q+ + +++ NLD + DE LR+ FS +G + VK+ AG+
Sbjct: 273 AELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQEAGQSK 332
Query: 314 GF--VQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
GF + F A +A+ +NG LG + + ++ G+
Sbjct: 333 GFGLICFFSPEAAAKAMAEMNGRILGSKPLNIALGQ 368
Score = 128 (50.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 45/180 (25%), Positives = 85/180 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L + F+ G+ ++VKV+++ +G+ + +GF+ F S A+
Sbjct: 188 EFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-SGKSKRFGFVSFDSHKAAKNA 246
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGEKRD---DTPDHTIFVGDLAA----DVTDYML 190
++ NG + NG+ F R E ++ I A ++ D +
Sbjct: 247 VEDMNGRDI-NGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTID 305
Query: 191 QETFRARYPSTKGA--KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
ET R + S G+ +V + + G++KG+G + F +AM EMNG ++P+ I
Sbjct: 306 DETLRKEF-SVFGSICRVKVMQEAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNI 364
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 272 (100.8 bits), Expect = 8.7e-23, P = 8.7e-23
Identities = 80/278 (28%), Positives = 139/278 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGY FV F + RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + N V++ N + DE L+ELFS+YG+ + VK+ P GK GFV
Sbjct: 185 ----AKAKEFTN---VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
F A +A+ +NG + G+ + + + +QA+
Sbjct: 238 FEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 275
Score = 236 (88.1 bits), Expect = 6.7e-19, P = 6.7e-19
Identities = 73/284 (25%), Positives = 136/284 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A+R +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQDAADRAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELF-SK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y T KV+ D TG++KG+GFV F + +A+ EMNG + + + +G A K
Sbjct: 214 YGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVER 272
Query: 258 SASYQN--SQVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----G 310
A + Q+ Q +++ NLD + DE LR+ FS +G + K+
Sbjct: 273 QAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 311 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 170 (64.9 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 54/190 (28%), Positives = 90/190 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V VF+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPIRI--MWSQR--DPSLRKSGVGN---------VFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K FV F + A+ A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 168 (64.2 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 59/215 (27%), Positives = 102/215 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G+ ++VKV+ + TG+ +G+GF+ F A +
Sbjct: 189 EFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG + NG+ F R E KR + I ++ +L +
Sbjct: 248 VEEMNGKDI-NGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 247 RIGPATNKKTVSASYQNS---QVAQSDDDPNNTTV 278
+ A K+ A N ++A P NT +
Sbjct: 364 YVALAQRKEERKAHLTNQYMQRIAGMRALPANTII 398
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 272 (100.8 bits), Expect = 8.7e-23, P = 8.7e-23
Identities = 80/278 (28%), Positives = 141/278 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + N V++ N V DE L+ELFSQ+G+ + VK+ P+GK GFV
Sbjct: 185 ----AKAKEFTN---VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
+ A +A+ +NG ++ G+ I + + +QA+
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 223 (83.6 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 70/284 (24%), Positives = 136/284 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D +G++KG+GFV + + +A+ EMNG S + + +G A K
Sbjct: 214 FGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVER 272
Query: 258 SASYQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----G 310
A + Q+ Q +++ NLD + DE LR+ FS +G + K+
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 311 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 173 (66.0 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 54/190 (28%), Positives = 92/190 (48%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V VF+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPIRI--MWSQR--DPSLRKSGVGN---------VFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K FV F + A++A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 157 (60.3 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 52/197 (26%), Positives = 96/197 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG + +G+ F R E KR + I ++ +L +
Sbjct: 248 VEEMNGKEI-SGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERKAHLTN 380
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 272 (100.8 bits), Expect = 9.2e-23, P = 9.2e-23
Identities = 80/278 (28%), Positives = 142/278 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + N V++ N V DE+L+ELFSQ+G+ + VK+ P+GK GFV
Sbjct: 185 ----AKAKEFTN---VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
+ A +A+ +NG ++ G+ I + + +QA+
Sbjct: 238 YEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAE 275
Score = 219 (82.2 bits), Expect = 5.7e-16, P = 5.7e-16
Identities = 69/284 (24%), Positives = 136/284 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D +G++KG+GFV + + +A+ EMNG + + + +G A K
Sbjct: 214 FGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVER 272
Query: 258 SASYQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----G 310
A + Q+ Q +++ NLD + DE LR+ FS +G + K+
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 311 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 173 (66.0 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 54/190 (28%), Positives = 92/190 (48%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V VF+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPIRI--MWSQR--DPSLRKSGVGN---------VFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K FV F + A++A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 156 (60.0 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 49/196 (25%), Positives = 94/196 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPN-----G------EQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTD 187
++ NG + G E+ L ++R +++ +L + D
Sbjct: 248 VEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 308 EKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 248 IGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 365 VALAQRKEERKAHLTN 380
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 205 (77.2 bits), Expect = 9.9e-23, Sum P(2) = 9.9e-23
Identities = 57/174 (32%), Positives = 89/174 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E L F+ G V + K+IR + G + Y FIE+ + A L
Sbjct: 7 KTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIR--EPGN-DPYAFIEYSNYQAATTALT 63
Query: 142 TFNGTPMPNGEQNFRLNWA-SFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
N E+ ++NWA S G K D + H IFVGDL+ ++ L+E F A +
Sbjct: 64 AMNKRLFL--EKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAF-APFGE 120
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
++V D T ++KGY FV F ++E A+ MNG + +R +R +T K
Sbjct: 121 ISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRK 174
Score = 157 (60.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 52/209 (24%), Positives = 94/209 (44%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D++ T++VG+L + V++ +L F P K K++ R G Y F+ + +
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGP-VKSCKII--REPGNDP-YAFIEYSNYQA 57
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
A+T MN + +++ AT+ +Q D ++ +FVG+L +
Sbjct: 58 ATTALTAMNKRLFLEKEIKVNWATSP--------GNQ--PKTDISSHHHIFVGDLSPEIE 107
Query: 289 DEHLRELFSQYGQLVHVKI---P---AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
E LRE F+ +G++ + +I P K FV F ++ AE A++ +NG +G ++IR
Sbjct: 108 TETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIR 167
Query: 343 LSWGRSPSNKQAQPDPNQWNAGYYGYAQG 371
+W +P G G G
Sbjct: 168 TNWSTRKLPPPREPSKGGGQGGGMGGGPG 196
Score = 115 (45.5 bits), Expect = 9.9e-23, Sum P(2) = 9.9e-23
Identities = 24/101 (23%), Positives = 52/101 (51%)
Query: 249 GPATNKKTVSASYQNS-QVAQSDDDPNNTTVFVGNLD-SIVTDEHLRELFSQYGQLVHVK 306
GP N V S +++ + + P NTTV+ G ++++D+ + + F Q+G + V+
Sbjct: 194 GPG-NGSGVKGSQRHTFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVR 252
Query: 307 IPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
+ K F++F + A A+ + +++ G ++ WG+
Sbjct: 253 VFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWGK 293
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 231 (86.4 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 70/278 (25%), Positives = 128/278 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E +L F G V ++V R+ T + Y ++ + + A AER L T
Sbjct: 11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDT 70
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N TP+ G+ R+ W+ ++ + +F+ +L + L +TF A + +
Sbjct: 71 LNNTPI-RGKA-CRIMWSQRDPSLRKSGVGN--VFIKNLDKGIDHKALYDTFSA-FGNIL 125
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D +KG+GFV + + +A+ ++NG+ + + + +GP ++
Sbjct: 126 SCKVVTDD-GNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGP----------FK 174
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKRCGFVQ 317
+S+ + T VF NL V + L+EL QYG++ ++ I A K GF
Sbjct: 175 SSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFAN 234
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
F A+ + NG G+ I + ++A+
Sbjct: 235 FESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAE 272
Score = 193 (73.0 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 63/282 (22%), Positives = 130/282 (46%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + +G+GF+ + ++ A++ +
Sbjct: 97 VGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSS-KGFGFVHYETQESADKAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
NG M NG++ F + S + + +F +L+ DV L+E + +Y
Sbjct: 156 AKVNGM-MINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQ-QYGE 213
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRPMRIGPATNKKTVSA 259
++ D G++KG+GF F + +E + + E NG +P+ G A K A
Sbjct: 214 ITNITIMADD-KGKSKGFGFANF-ESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREA 271
Query: 260 SYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV------KIPAGKRC 313
+++ + +++ N+D + ++ LRE+FSQ+G + K K
Sbjct: 272 ELKHT----FETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGF 327
Query: 314 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
GFV + A A+ +NG +G + + ++ + ++AQ
Sbjct: 328 GFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQ 369
Score = 103 (41.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 26/89 (29%), Positives = 53/89 (59%)
Query: 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEE 326
P +++++VG+L V+++HL E+F+Q G + ++++ +R +V + + + AE
Sbjct: 7 PISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAER 66
Query: 327 ALRMLNGTQLGGQNIRLSWG-RSPSNKQA 354
AL LN T + G+ R+ W R PS +++
Sbjct: 67 ALDTLNNTPIRGKACRIMWSQRDPSLRKS 95
Score = 62 (26.9 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 352 KQAQPDPNQWNAGYYGYAQG-YENYGYAAAAPQ 383
+Q P P WN G QG Y N YA P+
Sbjct: 409 QQMMPRPRNWNGQPVGVPQGQYANMNYARGQPR 441
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 264 (98.0 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 63/184 (34%), Positives = 104/184 (56%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
R++++G++ + E L FA TG V + K+IR +++ YGF+ + R A +
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAIL 109
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-TIFVGDLAADVTDYMLQETFRARYPS 200
+ NG + Q ++NWA + +G+ R+DT H IFVGDL+ +VTD ML F YP+
Sbjct: 110 SLNGRHLFG--QPIKVNWA-YASGQ-REDTSSHFNIFVGDLSPEVTDAMLFTCFSV-YPT 164
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
A+V+ D+ TGR++G+GFV F ++ + A+ E+ G + +R +R AT T
Sbjct: 165 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGED 224
Query: 261 YQNS 264
Q+S
Sbjct: 225 KQSS 228
Score = 141 (54.7 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 48/183 (26%), Positives = 82/183 (44%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D + +++VG++ VT+ +LQE F P + K++ YGFV + D
Sbjct: 49 DPSTCRSVYVGNIHIQVTEPLLQEVFAGTGP-VESCKLI----RKEKSSYGFVHYFDRRS 103
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
A+ +NG +P+++ A Y + Q +D ++ +FVG+L VT
Sbjct: 104 AGLAILSLNGRHLFGQPIKVNWA---------YASGQ---REDTSSHFNIFVGDLSPEVT 151
Query: 289 DEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
D L FS Y ++ G+ GFV F ++ A+ A+ + G LG + IR
Sbjct: 152 DAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIR 211
Query: 343 LSW 345
+W
Sbjct: 212 CNW 214
Score = 116 (45.9 bits), Expect = 0.00044, P = 0.00044
Identities = 27/104 (25%), Positives = 53/104 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + L TCF+ +V+ +++TG+ G+GF+ F ++ A+ +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 187
G + G + R NWA+ GA D + V +L + V++
Sbjct: 201 TGKWL--GSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSE 242
Score = 113 (44.8 bits), Expect = 0.00096, P = 0.00096
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 272 DPNNT-TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC--GFVQFADRSCAEEAL 328
DP+ +V+VGN+ VT+ L+E+F+ G + K+ ++ GFV + DR A A+
Sbjct: 49 DPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAI 108
Query: 329 RMLNGTQLGGQNIRLSWGRSPSNKQ 353
LNG L GQ I+++W + ++
Sbjct: 109 LSLNGRHLFGQPIKVNWAYASGQRE 133
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 270 (100.1 bits), Expect = 1.5e-22, P = 1.5e-22
Identities = 83/282 (29%), Positives = 142/282 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R++ T + GY + F AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + G+ R+ W+ ++ + IFV +L + L +TF A + +
Sbjct: 70 DTMNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFVKNLDRSIDSKTLYDTFSA-FGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
KVV D G +KGYGFV F + E RA+ +MNG+F + R + +G +++ A
Sbjct: 125 ILSCKVVCDE-NG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAE 182
Query: 261 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGF 315
A++ + N V++ NL + DE L++LFS++G + VK+ +GK GF
Sbjct: 183 LG----ARAKEFTN---VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGF 235
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
V F A +A+ +NG L G+ I + GR+ + Q +
Sbjct: 236 VSFERHEDARKAVDEMNGKDLNGKQIYV--GRAQKKVERQTE 275
Score = 229 (85.7 bits), Expect = 4.0e-18, P = 4.0e-18
Identities = 87/335 (25%), Positives = 155/335 (46%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +++ +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEEAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ +L D+ D LQ+ F +R
Sbjct: 156 EKMNGMFL-NDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLF-SR 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK--K 255
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A K +
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVER 272
Query: 256 TVSASYQNSQVAQS----DDDPNNTTV-------FVGNLDSIVTDEHLRELFSQYGQLVH 304
++ Q+ Q + P + +V +V NLD + DE LR+ FS +G +
Sbjct: 273 QTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITS 332
Query: 305 VKIPA-GKRC---GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQ 360
K+ G R GFV F+ A +A+ +NG + + + ++ + +QA NQ
Sbjct: 333 AKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLS-NQ 391
Query: 361 W-----------NAGYYGY--AQGYENYGYAAAAP 382
+ N G + AQG Y A AP
Sbjct: 392 YMQRMASTSAVPNPGINPFQPAQGLSGYFMTATAP 426
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 269 (99.8 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 80/278 (28%), Positives = 140/278 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + N V++ N V DE L+ELFSQ+G+ + VK+ P GK GFV
Sbjct: 185 ----AKAKEFTN---VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
+ A +A+ +NG ++ G+ I + + +QA+
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 221 (82.9 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 70/284 (24%), Positives = 135/284 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D G++KG+GFV + + +A+ EMNG S + + +G A K
Sbjct: 214 FGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVER 272
Query: 258 SASYQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----G 310
A + Q+ Q +++ NLD + DE LR+ FS +G + K+
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 311 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 173 (66.0 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 54/190 (28%), Positives = 92/190 (48%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V VF+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPIRI--MWSQR--DPSLRKSGVGN---------VFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K FV F + A++A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 155 (59.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 49/196 (25%), Positives = 93/196 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPN-----G------EQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTD 187
++ NG + G E+ L ++R +++ +L + D
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 308 EKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 248 IGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 365 VALAQRKEERKAHLTN 380
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 269 (99.8 bits), Expect = 1.9e-22, P = 1.9e-22
Identities = 80/278 (28%), Positives = 140/278 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + N V++ N V DE L+ELFSQ+G+ + VK+ P GK GFV
Sbjct: 185 ----AKAKEFTN---VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
+ A +A+ +NG ++ G+ I + + +QA+
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 221 (82.9 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 70/284 (24%), Positives = 135/284 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D G++KG+GFV + + +A+ EMNG S + + +G A K
Sbjct: 214 FGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVER 272
Query: 258 SASYQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----G 310
A + Q+ Q +++ NLD + DE LR+ FS +G + K+
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 311 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 173 (66.0 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 54/190 (28%), Positives = 92/190 (48%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V VF+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPIRI--MWSQR--DPSLRKSGVGN---------VFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K FV F + A++A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 155 (59.6 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 49/196 (25%), Positives = 93/196 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPN-----G------EQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTD 187
++ NG + G E+ L ++R +++ +L + D
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 308 EKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 248 IGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 365 VALAQRKEERKAHLTN 380
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 257 (95.5 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 70/215 (32%), Positives = 113/215 (52%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFVGDL++++ L+E F + +VV D T ++KGYGFV F +SE A+T
Sbjct: 463 IFVGDLSSEIETQQLREAFTP-FGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITA 521
Query: 236 MNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDD-----DPNNTTVFVGNLDSIVT-- 288
MNG + +R +R AT K AS +N + D+ P+N TV+VG ++S +T
Sbjct: 522 MNGQWLGSRSIRTNWATRKPP--ASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTAL 579
Query: 289 -DEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
+E L++ F+ YG + +++ K FV+F+ + A A+ ++ T++ Q ++ SWG+
Sbjct: 580 SEEVLQKTFAPYGAIQEIRVFKDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGK 639
Query: 348 SPSN-KQAQPDPNQWNAGYYGYAQGYENYGYAAAA 381
+ AQ Q A G+ YG AAA
Sbjct: 640 ESGDPNNAQTIATQALNSAAAAAAGFP-YGVGAAA 673
Score = 170 (64.9 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 55/213 (25%), Positives = 102/213 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL ++ L F GE+ +V+R+ QT + +GYGF+ FI ++ AE +
Sbjct: 463 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAM 522
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDD-------------TPDH-TIFVGDLAADVT--- 186
NG + G ++ R NWA+ +++ +P + T++VG + + +T
Sbjct: 523 NGQWL--GSRSIRTNWATRKPPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALS 580
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
+ +LQ+TF A Y + + +V D KGY FVRF + A+ ++ + +P+
Sbjct: 581 EEVLQKTF-APYGAIQEIRVFKD------KGYAFVRFSTKEAATHAIVGVHNTEINAQPV 633
Query: 247 RI------GPATNKKTVSASYQNSQVAQSDDDP 273
+ G N +T++ NS A + P
Sbjct: 634 KCSWGKESGDPNNAQTIATQALNSAAAAAAGFP 666
Score = 37 (18.1 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 365 YYGYAQGYENYG 376
Y GY QGY G
Sbjct: 731 YGGYQQGYMGMG 742
>CGD|CAL0001768 [details] [associations]
symbol:orf19.1876 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0000243 "commitment complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0001768 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000133 EMBL:AACQ01000132
RefSeq:XP_713133.1 RefSeq:XP_713179.1 ProteinModelPortal:Q59U75
GeneID:3645147 GeneID:3645207 KEGG:cal:CaO19.1876
KEGG:cal:CaO19.9432 Uniprot:Q59U75
Length = 452
Score = 262 (97.3 bits), Expect = 3.7e-22, P = 3.7e-22
Identities = 63/201 (31%), Positives = 108/201 (53%)
Query: 161 SFGAGEKRDDTP-DHTIFVGDLAADVTDYMLQETFRARYPST-KGAKVVIDRLTGRTKGY 218
S G+ ++ ++ +++IF+GDLA +V+D L F +YP+ K AKV+ D T ++KG+
Sbjct: 165 STGSHDRSTNSSNEYSIFIGDLAPEVSDAALYNKFNMKYPNQIKQAKVITDSSTRKSKGF 224
Query: 219 GFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA------TNKKTVSA-SYQNSQVAQSDD 271
GFV+F RA+ EM G ++ +R+G A T+ K V+ + V QS
Sbjct: 225 GFVKFHSPDIMNRALKEMQGYNIGSKAIRVGLAAGSHVDTSFKPVTKLDHHRVPVPQSQP 284
Query: 272 ------DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAE 325
DPNNT+ +G L +T+ L + F +G LV+ ++ + G+++F RS AE
Sbjct: 285 ALNQFTDPNNTSFTIGGLSGRITESELEQHFIGFGDLVYCRVSKDYQTGYIKFYSRSAAE 344
Query: 326 EALRMLNGTQLGGQNIRLSWG 346
A + G + ++++WG
Sbjct: 345 SAFLNMYGFMINDCRLQITWG 365
Score = 231 (86.4 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 56/185 (30%), Positives = 100/185 (54%)
Query: 84 LWIGDLQ-YWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+W+GDL W +E+ N + VK++R++ Y F+ F + + +Q
Sbjct: 85 MWMGDLDPQWTEESIDNLWTKLVSKPHHVKIMRDRLQPSKPSYCFVTFRDQESIDLAIQR 144
Query: 143 FNGTPMPNGEQNFRLNWA---SFGAGEKRDDTP-DHTIFVGDLAADVTDYMLQETFRARY 198
NG +P+ + F+LN++ S G+ ++ ++ +++IF+GDLA +V+D L F +Y
Sbjct: 145 -NGQKVPDSNRVFKLNYSGRNSTGSHDRSTNSSNEYSIFIGDLAPEVSDAALYNKFNMKY 203
Query: 199 PST-KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
P+ K AKV+ D T ++KG+GFV+F RA+ EM G ++ +R+G A V
Sbjct: 204 PNQIKQAKVITDSSTRKSKGFGFVKFHSPDIMNRALKEMQGYNIGSKAIRVGLAAGSH-V 262
Query: 258 SASYQ 262
S++
Sbjct: 263 DTSFK 267
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 265 (98.3 bits), Expect = 4.9e-22, P = 4.9e-22
Identities = 77/266 (28%), Positives = 136/266 (51%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ F+ G +V+ KV + +GQ +GYGF+++ + A++ ++
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHT----IFVGDLAADVTDYMLQETFRARYP 199
NG + N +Q + F ++RD T + T ++V +LA TD L+ F Y
Sbjct: 185 NGMLL-NDKQVYV---GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAF-GEYG 239
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT--- 256
A V+ D G++KG+GFV F + + RA+ +NG + +G A K
Sbjct: 240 KITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERET 298
Query: 257 -VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAG-- 310
+ Y+ + + ++ D ++ ++V NLD ++DE L+E+FS +G + K+ P G
Sbjct: 299 ELRVRYEQN-LKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTS 357
Query: 311 KRCGFVQFADRSCAEEALRMLNGTQL 336
K GFV FA A EA+ L+G +
Sbjct: 358 KGSGFVAFATPEEATEAMSQLSGKMI 383
Score = 259 (96.2 bits), Expect = 2.2e-21, P = 2.2e-21
Identities = 72/278 (25%), Positives = 138/278 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + + ++ L F G VV V+V R+ T + GYG++ F + A R +Q
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N P+ G+ R+ ++ +R + IF+ +L + L +TF + + +
Sbjct: 97 LNYIPL-YGKP-IRVMYSHRDPSVRRSGAGN--IFIKNLDESIDHKALHDTFSS-FGNIV 151
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KV +D +G++KGYGFV++ +E +A+ ++NG+ + + + +GP ++ ++
Sbjct: 152 SCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTAN 210
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL---VHVKIPAGKR--CGFVQ 317
++ T V+V NL TD+ L+ F +YG++ V +K GK GFV
Sbjct: 211 KTKF---------TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVN 261
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
F + A A+ LNG + + + + S ++ +
Sbjct: 262 FENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETE 299
Score = 182 (69.1 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 55/198 (27%), Positives = 95/198 (47%)
Query: 149 PNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVI 208
PNG + + G + +++VGDL +VTD L + F + + +V
Sbjct: 11 PNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAF-GQMGTVVTVRVCR 69
Query: 209 DRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQ 268
D +T R+ GYG+V F + + RA+ E+N + +P+R V S+++ V +
Sbjct: 70 DLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIR---------VMYSHRDPSVRR 120
Query: 269 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKRCGFVQFADRSC 323
S N +F+ NLD + + L + FS +G +V K+ K GFVQ+A+
Sbjct: 121 SG--AGN--IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEES 176
Query: 324 AEEALRMLNGTQLGGQNI 341
A++A+ LNG L + +
Sbjct: 177 AQKAIEKLNGMLLNDKQV 194
Score = 139 (54.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 46/184 (25%), Positives = 85/184 (46%)
Query: 98 LNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-----G- 151
L F G++ + V+++ + G+ +G+GF+ F + A R +++ NG + G
Sbjct: 231 LKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 289
Query: 152 -------EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA 204
E R+ + E D ++V +L ++D L+E F + + + +
Sbjct: 290 AQKKSERETELRVRYEQ-NLKEAADKFQSSNLYVKNLDPSISDEKLKEIF-SPFGTVTSS 347
Query: 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK--KTVSASYQ 262
KV+ D G +KG GFV F E AM++++G ++P+ + A K + V Q
Sbjct: 348 KVMRDP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQ 406
Query: 263 NSQV 266
SQV
Sbjct: 407 FSQV 410
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 265 (98.3 bits), Expect = 5.1e-22, P = 5.1e-22
Identities = 81/280 (28%), Positives = 141/280 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + N V++ N + DE L+ELF ++G + VK+ +GK GFV
Sbjct: 185 ----ARAKEFTN---VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
F A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 275
Score = 230 (86.0 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 74/285 (25%), Positives = 135/285 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A KK
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVE 271
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAG- 310
+ + Q D ++V NLD + DE LR+ FS +G + K+ G
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 311 -KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 177 (67.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 55/190 (28%), Positives = 91/190 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V +F+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPVRI--MWSQR--DPSLRKSGVGN---------IFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K GFV F + AE A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 168 (64.2 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERQAHLTN 380
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 265 (98.3 bits), Expect = 5.1e-22, P = 5.1e-22
Identities = 81/280 (28%), Positives = 141/280 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + N V++ N + DE L+ELF ++G + VK+ +GK GFV
Sbjct: 185 ----ARAKEFTN---VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
F A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 275
Score = 230 (86.0 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 74/285 (25%), Positives = 135/285 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A KK
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVE 271
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAG- 310
+ + Q D ++V NLD + DE LR+ FS +G + K+ G
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 311 -KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 177 (67.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 55/190 (28%), Positives = 91/190 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V +F+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPVRI--MWSQR--DPSLRKSGVGN---------IFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K GFV F + AE A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 168 (64.2 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERQAHLTN 380
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 262 (97.3 bits), Expect = 6.4e-22, P = 6.4e-22
Identities = 70/216 (32%), Positives = 112/216 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFVGDL+A++ L++ F + +VV D T ++KGYGFV F +SE A+T
Sbjct: 98 IFVGDLSAEIETQQLKDAFTP-FGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITA 156
Query: 236 MNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDD-----DPNNTTVFVGN----LDSI 286
MNG + +R +R AT K + + N++ D+ P N TV+ G L
Sbjct: 157 MNGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGINGALSGF 216
Query: 287 VTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346
+ +E L++ FS YG + +++ K FV+F+ + A A+ +N T++ Q ++ +WG
Sbjct: 217 LNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIVAVNNTEINQQPVKCAWG 276
Query: 347 RSPSNKQAQPDPNQWNAGYYG-YAQGYENYGYAAAA 381
+ DPN +A G AQG+ +G AAAA
Sbjct: 277 KESG------DPNHMSAIAGGALAQGFP-FGSAAAA 305
Score = 148 (57.2 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 44/180 (24%), Positives = 86/180 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL ++ L F GE+ +V+R+ QT + +GYGF+ F+ ++ AE +
Sbjct: 98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 157
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDD---------------TPDH-TIFVGDLAADVTD 187
NG + G ++ R NWA+ + D +P + T++ G + ++
Sbjct: 158 NGQWL--GSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGINGALSG 215
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
++ +E + + S G I R+ + KGY FVRF + A+ +N + +P++
Sbjct: 216 FLNEEILQKTF-SPYGTIQEI-RVF-KDKGYAFVRFSTKEAATHAIVAVNNTEINQQPVK 272
Score = 128 (50.1 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 30/100 (30%), Positives = 53/100 (53%)
Query: 262 QNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PA---GKRCGF 315
Q Q+ ++ P +FVG+L + + + L++ F+ +G++ ++ P K GF
Sbjct: 82 QQQQLVGNNSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGF 141
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWG-RSPSNKQA 354
V F +S AE A+ +NG LG ++IR +W R P +A
Sbjct: 142 VSFVKKSEAETAITAMNGQWLGSRSIRTNWATRKPPATKA 181
Score = 44 (20.5 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 18/57 (31%), Positives = 23/57 (40%)
Query: 338 GQNIRLSW-GRSPSNKQAQP----DPNQWNAGYYG--YAQ--GYENYGYAAAAPQDP 385
GQ + W +P+ A P P Q+ G G Y Q GY+ GY Q P
Sbjct: 312 GQQVAGYWYPPAPTYPAAAPASALQPGQFLQGMQGFTYGQFAGYQQAGYMGMGVQLP 368
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 79/280 (28%), Positives = 140/280 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N M G Q R+ W+ G ++ + IF+ +L + + L +TF + + +
Sbjct: 70 DTMN-FEMLKG-QPIRIMWSQRDPGLRKSGVGN--IFIKNLEDSIDNKALYDTF-STFGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
KV D R G+GFV F +A+ MNG+ + R + +G +++ A
Sbjct: 125 ILSCKVACDEHGSR--GFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAE 182
Query: 261 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP---AG-KRC-GF 315
++ + T ++V NL V ++ L++LFSQ+G+++ VK+ +G RC GF
Sbjct: 183 L-GARALEF------TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGF 235
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
V F A++A+ +NG ++ G+ L GR+ + Q
Sbjct: 236 VNFEKHEEAQKAVVHMNGKEVSGR--LLYAGRAQKRVERQ 273
Score = 177 (67.4 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 61/233 (26%), Positives = 109/233 (46%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L+ +D L F+ G +++ KV ++ + G+GF+ F + A++ +
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP--DHT-IFVGDLAADVTDYMLQETFRAR 197
T NG + N + F ++ S E + T I+V +L DV + LQ+ F ++
Sbjct: 156 NTMNGMLL-NDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G ++ +GFV F E +A+ MNG S R + G A K+
Sbjct: 214 FGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRA-QKRVE 271
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVK 306
+ + Q D ++V NLD + D+ LR+ FS YG + K
Sbjct: 272 RQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAK 324
Score = 161 (61.7 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 51/188 (27%), Positives = 90/188 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D T R+ GY ++ F ++ R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI S ++ + +S N +F+ NL+ + ++
Sbjct: 68 ALDTMNFEMLKGQPIRI---------MWSQRDPGLRKSG--VGN--IFIKNLEDSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA---GKR-CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ G R GFV F A++A+ +NG L + + + +
Sbjct: 115 LYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK 174
Query: 348 SPSNKQAQ 355
S ++A+
Sbjct: 175 SRREREAE 182
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 262 (97.3 bits), Expect = 9.2e-22, P = 9.2e-22
Identities = 80/280 (28%), Positives = 141/280 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + N V++ N + DE L++LF ++G + VK+ +GK GFV
Sbjct: 185 ----ARAKEFTN---VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
F A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 275
Score = 209 (78.6 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 64/244 (26%), Positives = 116/244 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A KK
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVE 271
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAGK 311
+ + Q D ++V NLD + DE LR+ FS +G + K+ G+
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 312 RCGF 315
GF
Sbjct: 332 SKGF 335
Score = 177 (67.4 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 55/190 (28%), Positives = 91/190 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V +F+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPVRI--MWSQR--DPSLRKSGVGN---------IFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K GFV F + AE A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 118 (46.6 bits), Expect = 0.00045, P = 0.00045
Identities = 55/217 (25%), Positives = 95/217 (43%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP- 245
D L++ F + + + AKV+++ GR+KG+GFV F N V +P
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSYMQRMASVRAVPNPVINPYQPA 363
Query: 246 ------MRIGPATNKKTVSASYQNSQVAQSDDDPNNT 276
M P T + +A Y SQ+AQ P T
Sbjct: 364 PPSGYFMAAIPQTQNR--AAYYPPSQIAQLRPSPRWT 398
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 262 (97.3 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 80/280 (28%), Positives = 141/280 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + N V++ N + DE L++LF ++G + VK+ +GK GFV
Sbjct: 185 ----ARAKEFTN---VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
F A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 275
Score = 227 (85.0 bits), Expect = 6.4e-18, P = 6.4e-18
Identities = 73/285 (25%), Positives = 135/285 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A KK
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVE 271
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAG- 310
+ + Q D ++V NLD + DE LR+ FS +G + K+ G
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 311 -KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 177 (67.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 55/190 (28%), Positives = 91/190 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V +F+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPVRI--MWSQR--DPSLRKSGVGN---------IFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K GFV F + AE A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 168 (64.2 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERQAHLTN 380
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 262 (97.3 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 80/280 (28%), Positives = 141/280 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + N V++ N + DE L++LF ++G + VK+ +GK GFV
Sbjct: 185 ----ARAKEFTN---VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
F A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 275
Score = 227 (85.0 bits), Expect = 6.4e-18, P = 6.4e-18
Identities = 73/285 (25%), Positives = 135/285 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A KK
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVE 271
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAG- 310
+ + Q D ++V NLD + DE LR+ FS +G + K+ G
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 311 -KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 177 (67.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 55/190 (28%), Positives = 91/190 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V +F+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPVRI--MWSQR--DPSLRKSGVGN---------IFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K GFV F + AE A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 168 (64.2 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERQAHLTN 380
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 262 (97.3 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 80/280 (28%), Positives = 141/280 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + N V++ N + DE L++LF ++G + VK+ +GK GFV
Sbjct: 185 ----ARAKEFTN---VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
F A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 275
Score = 227 (85.0 bits), Expect = 6.4e-18, P = 6.4e-18
Identities = 73/285 (25%), Positives = 135/285 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A KK
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVE 271
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAG- 310
+ + Q D ++V NLD + DE LR+ FS +G + K+ G
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 311 -KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 177 (67.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 55/190 (28%), Positives = 91/190 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V +F+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPVRI--MWSQR--DPSLRKSGVGN---------IFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K GFV F + AE A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 168 (64.2 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERQAHLTN 380
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 262 (97.3 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 80/280 (28%), Positives = 141/280 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + N V++ N + DE L++LF ++G + VK+ +GK GFV
Sbjct: 185 ----ARAKEFTN---VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
F A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 275
Score = 227 (85.0 bits), Expect = 6.4e-18, P = 6.4e-18
Identities = 73/285 (25%), Positives = 135/285 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A KK
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVE 271
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAG- 310
+ + Q D ++V NLD + DE LR+ FS +G + K+ G
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 311 -KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 177 (67.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 55/190 (28%), Positives = 91/190 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V +F+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPVRI--MWSQR--DPSLRKSGVGN---------IFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K GFV F + AE A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 168 (64.2 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERQAHLTN 380
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 261 (96.9 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 68/276 (24%), Positives = 139/276 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL+ + E +L F+ G V +++V R+ T GY ++ F + ++
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N TP+ + R+ W+ ++ + + IF+ +L D+ + L +TF +
Sbjct: 99 LNYTPIKG--RLCRIMWSQRDPSLRKKGSGN--IFIKNLHPDIDNKALYDTFSV-FGDIL 153
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
+K+ D G++KG+GFV F +E A+ +NG+ + + + + P ++K +
Sbjct: 154 SSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKE-----R 207
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQ 317
+SQ+ ++ + T ++V N++S TDE +ELF+++G +V + K GFV
Sbjct: 208 DSQLEETK--AHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVN 265
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
+ A +A+ LN ++L G+ + + GR+ +
Sbjct: 266 YEKHEDAVKAVEALNDSELNGEKLYV--GRAQKKNE 299
Score = 198 (74.8 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 64/258 (24%), Positives = 121/258 (46%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G++++ K+ + + G+ +G+GF+ F A+ +
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKR-DDTPDH--TIFVGDLAADVTDYMLQETFRARYPS 200
NG + NG++ + S + + ++T H ++V ++ ++ TD QE F A++
Sbjct: 187 NGMLL-NGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELF-AKFGP 244
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK----T 256
A + D G+ KG+GFV + + ++A+ +N + + +G A K
Sbjct: 245 IVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHV 303
Query: 257 VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---GKRC 313
+ Y+ ++ + +FV NLD V DE L E F+ YG + K+ GK
Sbjct: 304 LKKQYEAYRLEKMAKY-QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSK 362
Query: 314 GFVQFADRSCAEEALRML 331
GF F S EEA + +
Sbjct: 363 GF-GFVCFSTPEEATKAI 379
Score = 145 (56.1 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 53/201 (26%), Positives = 92/201 (45%)
Query: 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYG 219
A+ G+ + + +++VGDL V++ L + F + S +V D +T + GY
Sbjct: 24 AATGSESQSVENSSASLYVGDLEPSVSEAHLYDIF-SPIGSVSSIRVCRDAITKTSLGYA 82
Query: 220 FVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVF 279
+V F D +A+ ++N R RI +++ S + S N +F
Sbjct: 83 YVNFNDHEAGRKAIEQLNYTPIKGRLCRI--MWSQRDPSLRKKGS---------GN--IF 129
Query: 280 VGNLDSIVTDEHLRELFSQYGQLVHVKIPA---GKR--CGFVQFADRSCAEEALRMLNGT 334
+ NL + ++ L + FS +G ++ KI GK GFV F + A+EA+ LNG
Sbjct: 130 IKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGM 189
Query: 335 QLGGQNIRLSWGRSPSNKQAQ 355
L GQ I ++ S + +Q
Sbjct: 190 LLNGQEIYVAPHLSRKERDSQ 210
Score = 138 (53.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 51/186 (27%), Positives = 88/186 (47%)
Query: 94 DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153
DE + FA G +V+ + ++ G+++G+GF+ + A + ++ N + + NGE+
Sbjct: 232 DEQF-QELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSEL-NGEK 288
Query: 154 ---------NFRLNWAS--FGAG--EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
N R++ + A EK +FV +L V D L+E F A Y +
Sbjct: 289 LYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEF-APYGT 347
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
AKV+ G++KG+GFV F E +A+TE N + +P+ + A +K V S
Sbjct: 348 ITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA-QRKDVRRS 405
Query: 261 YQNSQV 266
Q+
Sbjct: 406 QLAQQI 411
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 262 (97.3 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 80/280 (28%), Positives = 141/280 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + N V++ N + DE L++LF ++G + VK+ +GK GFV
Sbjct: 185 ----ARAKEFTN---VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
F A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 275
Score = 227 (85.0 bits), Expect = 6.6e-18, P = 6.6e-18
Identities = 73/285 (25%), Positives = 135/285 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A KK
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVE 271
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAG- 310
+ + Q D ++V NLD + DE LR+ FS +G + K+ G
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 311 -KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 177 (67.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 55/190 (28%), Positives = 91/190 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V +F+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPVRI--MWSQR--DPSLRKSGVGN---------IFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K GFV F + AE A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 168 (64.2 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERQAHLTN 380
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 260 (96.6 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 78/280 (27%), Positives = 139/280 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---GKR--CGFVQ 317
A++ + N V++ N + DE L+E+F +YG + VK+ GK GFV
Sbjct: 185 ----ARAKEFTN---VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
F A++A+ +NG + G+++ + GR+ + Q +
Sbjct: 238 FERHEDAQKAVDEMNGKDMNGKSMFV--GRAQKKVERQTE 275
Score = 226 (84.6 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 75/285 (26%), Positives = 132/285 (46%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 156 DKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y KV+ D G++KG+GFV F + +A+ EMNG + + M +G A KK
Sbjct: 214 YGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRA-QKKVE 271
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAG- 310
+ + Q D ++V NLD + DE LR+ F +G + K+ G
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGR 331
Query: 311 -KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 178 (67.7 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 56/190 (29%), Positives = 91/190 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN RP+RI +++ S + S V +F+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGRPVRI--MWSQR--DPSLRKSGVGN---------IFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K GFV F + AE A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 159 (61.0 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 54/197 (27%), Positives = 93/197 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + M++ L F G ++VKV+ + G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG M NG+ F R E K+D + ++V +L +
Sbjct: 248 VDEMNGKDM-NGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEFLP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERQAHLTN 380
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 252 (93.8 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 76/279 (27%), Positives = 137/279 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + G +GY ++ F S A A R +
Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNGS-KGYAYVHFDSLAAANRAI 162
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRA 196
NG + N Q + R + A E R D T +FV + D+ D L++ F +
Sbjct: 163 WHMNGVRL-NNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLF-S 220
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
Y T+ KV+ D TG++KG+GFVR+ +A+ E++G + + +G A K
Sbjct: 221 EYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIE 279
Query: 257 VSASYQN--SQVAQSDDD-PNNTTVFVGNLDSIVTDEHLRELFSQYGQL----VHVKIPA 309
A + ++ D P +++ NLD + DE L+E FS +G + V +++
Sbjct: 280 RLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMMEVGQ 339
Query: 310 GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348
GK G V F+ A +A+ +NG +G + + ++ G++
Sbjct: 340 GKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQA 378
Score = 220 (82.5 bits), Expect = 8.9e-17, P = 8.9e-17
Identities = 77/261 (29%), Positives = 122/261 (46%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++GDL + E L F G + ++ R+ T GYG++ F A AE L T
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
N + NG+ FRL W+ ++ + IF+ +L + + L F A + +
Sbjct: 80 N-FDLINGKP-FRLMWSQPDDHLRKSGVGN--IFIKNLDKSIDNRALFYLFSA-FGNILS 134
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQN 263
KVV D G +KGY +V F + RA+ MNGV + R + +G + +A
Sbjct: 135 CKVVCDD-NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE--- 189
Query: 264 SQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQF 318
++ D T VFV N + DE L++LFS+YG VK+ GK GFV++
Sbjct: 190 ---VRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRY 246
Query: 319 ADRSCAEEALRMLNGTQLGGQ 339
A++A+ L+G + G+
Sbjct: 247 ETHEAAQKAVLELHGKSIDGK 267
Score = 142 (55.0 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 50/196 (25%), Positives = 89/196 (45%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG+K+ ++VGDL DVT+ ML + FR P + ++ D +T GYG+V F
Sbjct: 9 AGKKKKYLKA-ALYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSPLGYGYVNF 66
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
++ A+ MN + +P R+ S + + +S N +F+ NL
Sbjct: 67 RFPADAEWALNTMNFDLINGKPFRL---------MWSQPDDHLRKSG--VGN--IFIKNL 113
Query: 284 DSIVTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQ 339
D + + L LFS +G ++ K+ K +V F + A A+ +NG +L +
Sbjct: 114 DKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNR 173
Query: 340 NIRLSWGRSPSNKQAQ 355
+ + + P + A+
Sbjct: 174 QVYVGRFKFPEERAAE 189
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 260 (96.6 bits), Expect = 1.8e-21, P = 1.8e-21
Identities = 80/280 (28%), Positives = 140/280 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + N V++ N + DE L++LF ++G + VK+ +GK GFV
Sbjct: 185 ----ARAKEFTN---VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
F A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 275
Score = 227 (85.0 bits), Expect = 6.4e-18, P = 6.4e-18
Identities = 73/285 (25%), Positives = 135/285 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A KK
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVE 271
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAG- 310
+ + Q D ++V NLD + DE LR+ FS +G + K+ G
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 311 -KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 173 (66.0 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 54/190 (28%), Positives = 90/190 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL D T+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDATEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V +F+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPVRI--MWSQR--DPSLRKSGVGN---------IFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K GFV F + AE A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 168 (64.2 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERQAHLTN 380
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 259 (96.2 bits), Expect = 2.2e-21, P = 2.2e-21
Identities = 82/280 (29%), Positives = 138/280 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---GKR--CGFVQ 317
A++ + N V++ N + DE L+E F QYG + VK+ GK GFV
Sbjct: 185 ----ARAKEFTN---VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
F A++A+ +NG L G+ I + GR+ + Q +
Sbjct: 238 FERHEDAQKAVDDMNGKDLNGKAIFV--GRAQKKVERQTE 275
Score = 218 (81.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 72/285 (25%), Positives = 134/285 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 156 DKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWF-GQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y + KV+ D G+++G+GFV F + +A+ +MNG + + + +G A KK
Sbjct: 214 YGAALSVKVMTDD-HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRA-QKKVE 271
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAG- 310
+ + Q D ++V NLD + DE LR+ F+ +G + K+ G
Sbjct: 272 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGR 331
Query: 311 -KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 175 (66.7 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 55/190 (28%), Positives = 91/190 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V +F+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPVRI--MWSQR--DPSLRKSGVGN---------IFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K GFV F + AE A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 162 (62.1 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 55/197 (27%), Positives = 92/197 (46%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + G+ G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+ F R E K+D + ++V +L +
Sbjct: 248 VDDMNGKDL-NGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + S AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEFTP-FGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERQAHLTN 380
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 258 (95.9 bits), Expect = 2.8e-21, P = 2.8e-21
Identities = 76/280 (27%), Positives = 138/280 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + +F+ +L + + L +TF A + +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVGN--VFIKNLDESIDNKALYDTFSA-FGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
KVV D R GYGFV F + RA+ MNG+ + R + +G +++
Sbjct: 125 ILSCKVVCDEHGSR--GYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELE 182
Query: 261 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGF 315
Y ++V + T V++ N + D+ LRE+FS +G + VK+ G+ GF
Sbjct: 183 Y-GAKVMEF------TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGF 235
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
V + + A++A+ +NG ++ G+ I + GR+ + Q
Sbjct: 236 VNYGNHEEAQKAVSEMNGKEVNGRMIYV--GRAQKRIERQ 273
Score = 249 (92.7 bits), Expect = 2.6e-20, P = 2.6e-20
Identities = 74/263 (28%), Positives = 132/263 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ A R +
Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETQEAANRAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP--DHT-IFVGDLAADVTDYMLQETFRAR 197
QT NG + N + F ++ S E + T +++ + D+ D L+E F A
Sbjct: 156 QTMNGMLL-NDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSA- 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ +T KV++D TGR++G+GFV +G+ E +A++EMNG + R + +G A +
Sbjct: 214 FGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIER 272
Query: 258 SASYQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----G 310
+ Q+ Q + ++V NLD + D+ LR+ FS YG + K+
Sbjct: 273 QGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHS 332
Query: 311 KRCGFVQFADRSCAEEALRMLNG 333
K GFV F+ A +A+ +NG
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNG 355
Score = 162 (62.1 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 53/188 (28%), Positives = 89/188 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D T R+ GY ++ F ++ R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN RP+RI S ++ + +S N VF+ NLD + ++
Sbjct: 68 ALDTMNFEVIKGRPIRI---------MWSQRDPGLRKSG--VGN--VFIKNLDESIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA---GKR-CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ G R GFV F + A A++ +NG L + + + +
Sbjct: 115 LYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFK 174
Query: 348 SPSNKQAQ 355
S ++ +
Sbjct: 175 SRRERELE 182
Score = 162 (62.1 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 56/197 (28%), Positives = 93/197 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G ++VKV+ + TG+ G+GF+ + + A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
+ NG + NG + R GE KR + I +V +L +
Sbjct: 248 VSEMNGKEV-NGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + Y + AKV+ + G +KG+GFV F E +A+TEMNG ST+P+
Sbjct: 307 DDRLRKEF-SPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERKAILTN 380
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 258 (95.9 bits), Expect = 2.9e-21, P = 2.9e-21
Identities = 74/278 (26%), Positives = 136/278 (48%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGYGFV F RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + N V++ N + DE L+E+F +YG + +++ +GK GFV
Sbjct: 185 ----ARAKEFTN---VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
F A+ A+ +NG ++ G+ + + + +Q +
Sbjct: 238 FERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTE 275
Score = 227 (85.0 bits), Expect = 6.4e-18, P = 6.4e-18
Identities = 74/284 (26%), Positives = 134/284 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F + AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETHEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIF-CK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK--K 255
Y +V+ D +G++KG+GFV F + RA+ EMNG + + + +G A K +
Sbjct: 214 YGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGER 272
Query: 256 TVSASYQNSQVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAG-- 310
+ Q+ Q ++V NLD + DE LR+ FS +G + K+ G
Sbjct: 273 QTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 311 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 179 (68.1 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 56/190 (29%), Positives = 90/190 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMMTRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN RP+RI +++ S + S V +F+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGRPVRI--MWSQR--DPSLRKSGVGN---------IFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K GFV F AE A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 169 (64.5 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 55/202 (27%), Positives = 99/202 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++++V+ + +G+ +G+GF+ F A+R
Sbjct: 189 EFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGE----------KRDDTPDH---TIFVGDLAADVT 186
+ NG M NG+Q + G + K+D + ++V +L +
Sbjct: 248 VDEMNGKEM-NGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLD 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQNSQVAQ 268
+ A K+ A + SQ Q
Sbjct: 364 YVALAQRKEERQA-HLTSQYMQ 384
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 253 (94.1 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 63/187 (33%), Positives = 103/187 (55%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
R+++ G++ + E L FA TG + + K+IR ++ YGF+ + R A +
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIM 118
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-TIFVGDLAADVTDYMLQETFRARYPS 200
T NG + Q ++NWA + G+ R+DT H IFVGDL+ +VTD L ++F A
Sbjct: 119 TLNGRHIFG--QPMKVNWA-YATGQ-REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 201 T---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ + A+V+ D+ TGR++G+GFV F ++ + A+ EMNG + S+R +R AT T
Sbjct: 175 SSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATF 234
Query: 258 SASYQNS 264
+S
Sbjct: 235 GEDKHSS 241
Score = 132 (51.5 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 48/187 (25%), Positives = 80/187 (42%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D T +++ G++ VT+ +LQE F + P + D+ YGFV + D
Sbjct: 58 DPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDK-----SSYGFVHYFDRRC 112
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
A+ +NG +PM++ A Y Q +D ++ +FVG+L VT
Sbjct: 113 ASMAIMTLNGRHIFGQPMKVNWA---------YATGQ---REDTSSHFNIFVGDLSPEVT 160
Query: 289 DEHLRELFSQYGQL------VHV----KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGG 338
D L + FS + V K + GFV F ++ A+ A+ +NG +
Sbjct: 161 DAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSS 220
Query: 339 QNIRLSW 345
+ IR +W
Sbjct: 221 RQIRCNW 227
Score = 121 (47.7 bits), Expect = 0.00013, P = 0.00013
Identities = 42/139 (30%), Positives = 60/139 (43%)
Query: 227 SEQLRAMTEMNGV-FCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNN---TTVFVGN 282
S Q+R G F + G + + T +S +++ D NN TTV+VGN
Sbjct: 220 SRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGN 279
Query: 283 LDSIVTDEHLRELFSQYGQLV--HVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ-LGGQ 339
L VT L LF G V V++ K GFV++ A A++M N L +
Sbjct: 280 LSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSR 339
Query: 340 NIRLSWGRSPSNKQAQPDP 358
IR SWG P+ +P
Sbjct: 340 QIRCSWGNKPTPSGTASNP 358
Score = 120 (47.3 bits), Expect = 0.00017, P = 0.00017
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 272 DPNNT-TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC--GFVQFADRSCAEEAL 328
DP +V+ GN+ + VT+ L+E+F+ G + K+ + GFV + DR CA A+
Sbjct: 58 DPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAI 117
Query: 329 RMLNGTQLGGQNIRLSWGRSPSNKQ 353
LNG + GQ ++++W + ++
Sbjct: 118 MTLNGRHIFGQPMKVNWAYATGQRE 142
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 256 (95.2 bits), Expect = 4.7e-21, P = 4.7e-21
Identities = 74/282 (26%), Positives = 140/282 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ + + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + +F+ +L + + L +TF A + +
Sbjct: 70 DTMNFEVIKG--RPVRIMWSQRDPGLRKSGVGN--VFIKNLDDSIDNKALYDTFSA-FGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
KVV D G ++G+GFV F + RA+ MNG+ + R + +G ++K A
Sbjct: 125 ILSCKVVCDE-NG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAE 182
Query: 261 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKRCGF 315
+ ++ + T V++ N + D LRE+FS++G+ + VK+ K GF
Sbjct: 183 F-GARAMEF------TNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGF 235
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
V F A++A+ +NG ++ G+ + + GR+ + Q +
Sbjct: 236 VNFEKHEEAQKAVADMNGKEINGRMVYV--GRAQKRLERQSE 275
Score = 241 (89.9 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 77/267 (28%), Positives = 130/267 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G G+GF+ F ++ A R +
Sbjct: 98 VGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCD-ENGS-RGHGFVHFETQEAATRAI 155
Query: 141 QTFNGTPMPNGEQNF-------RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQET 193
QT NG + N + F + A FGA + T +++ + D+ D L+E
Sbjct: 156 QTMNGMLL-NDRKVFVGHFKSRKEREAEFGA-RAMEFT---NVYIKNFGDDMDDNRLREI 210
Query: 194 FRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253
F +R+ T KV++D TGR+KG+GFV F E +A+ +MNG + R + +G A
Sbjct: 211 F-SRFGKTLSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQK 268
Query: 254 KKTVSASYQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 309
+ + + Q+ Q ++V NLD + DE LR+ FS YG + K+
Sbjct: 269 RLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE 328
Query: 310 ---GKRCGFVQFADRSCAEEALRMLNG 333
K GFV F+ A +A+ +NG
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 167 (63.8 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 55/197 (27%), Positives = 96/197 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G+ ++VKV+ + TG+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKA 247
Query: 140 LQTFNGTPMPNGEQNF------RLNWASFGAGE----KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG + RL S + K++ + ++V +L +
Sbjct: 248 VADMNGKEI-NGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + Y + AKV+ + G +KG+GFV F E +A+TEMNG ST+P+
Sbjct: 307 DERLRKEF-SPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERKAILTN 380
Score = 161 (61.7 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 53/188 (28%), Positives = 90/188 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D + R+ GY ++ F ++ R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDVASRRSLGYAYINFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN RP+RI S ++ + +S N VF+ NLD + ++
Sbjct: 68 ALDTMNFEVIKGRPVRI---------MWSQRDPGLRKSG--VGN--VFIKNLDDSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA---GKRC-GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ G R GFV F + A A++ +NG L + + + +
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFK 174
Query: 348 SPSNKQAQ 355
S ++A+
Sbjct: 175 SRKEREAE 182
>POMBASE|SPBC1289.12 [details] [associations]
symbol:usp109 "U1 snRNP-associated protein Usp109"
species:4896 "Schizosaccharomyces pombe" [GO:0000395 "mRNA
5'-splice site recognition" evidence=IC] [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC1289.12 GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005685 GO:GO:0000395 PIR:T39363 RefSeq:NP_596836.2
GeneID:2540117 OrthoDB:EOG4HX8B5 NextBio:20801253 Uniprot:O94621
Length = 365
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 74/272 (27%), Positives = 129/272 (47%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+LW+ +L+ WM+E Y+ F + V V + ++G I IEF S+ A L+
Sbjct: 4 SLWLNNLEEWMNEDYIRAIFEN---VRKVNYYEDGESGAILKTCCIEFESQDAARNALER 60
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
+ + +G N S + + +F+ ++ +V++ ++ F+ RY +
Sbjct: 61 QSTQRLISG------NPISLDVVPEWQKPSYYMLFISNIDPEVSENDIKYLFQ-RY-NFI 112
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA-TNKKTVSAS- 260
A+V + + G + F+ +ES+ A EM G FC R + + ++K T +S
Sbjct: 113 SARV-LRCVDGTSTSIAFIWLANESDIQNAQVEMQGAFCLKRSILVHSVKSDKNTYLSSP 171
Query: 261 --YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQF 318
Y Q DPNNT V+V L +T + LR F +G++++ ++ G + F
Sbjct: 172 GFYGTPQPLNQFTDPNNTAVYVHQLPENITTQELRSYFLHFGEILYTQV--NNNSGRIVF 229
Query: 319 ADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350
A R AE+A+ +N L G I+LSW R PS
Sbjct: 230 AQRYFAEQAINEMNNFPLHGVRIQLSWARPPS 261
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 256 (95.2 bits), Expect = 5.1e-21, P = 5.1e-21
Identities = 76/278 (27%), Positives = 139/278 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L+ GDL + E +L F H VV+V+V R++ + GY +I F + A R ++
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSL-GYAYINFSNPNDAYRAMEA 108
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N TP+ ++ R+ ++ + + IF+ +L A + + L ETF + + +
Sbjct: 109 LNYTPL--FDRPIRIMLSNRDPSTRLSGKGN--IFIKNLDASIDNKALFETFSS-FGTIL 163
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KV +D +TGR+KGYGFV+F E A+ ++NG+ + + + +G ++ A +
Sbjct: 164 SCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQE-RARDE 221
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL---VHVKIPAGK-RC-GFVQ 317
N+ P T V+V NL + ++ LR+ F ++G + V ++ +G RC GFV
Sbjct: 222 NTPT------PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVN 275
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
F A A+ +NG LG + + + S ++ +
Sbjct: 276 FECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEE 313
Score = 236 (88.1 bits), Expect = 7.4e-19, P = 7.4e-19
Identities = 75/284 (26%), Positives = 141/284 (49%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV + TG+ +GYGF++F A+ +
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 144 NGTPMPNGEQNFRLNWA--SFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARYPS 200
NG M N +Q F ++ A ++ TP T ++V +L ++ + L++TF ++
Sbjct: 197 NGMLM-NDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTF-GKFGV 254
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK----KT 256
A V+ D+ +G ++ +GFV F A+ +MNG+ + +G A K +
Sbjct: 255 ISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEE 313
Query: 257 VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKRC 313
+ ++ ++ + + +++ NLD V DE L+E+FS+YG + K+ P G
Sbjct: 314 LRRKFEQERINRFEKS-QGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSR 372
Query: 314 GFVQFADRSCAEEALRML---NGTQLGGQNIRLSWGRSPSNKQA 354
GF F S EEALR L NG +G + + ++ + +++A
Sbjct: 373 GF-GFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRA 415
Score = 144 (55.7 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 46/179 (25%), Positives = 83/179 (46%)
Query: 169 DDT-PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
D T P+ +++ GDL VT+ L + F+ + +V D+ R+ GY ++ F + +
Sbjct: 43 DQTHPNSSLYAGDLDPKVTEAHLFDLFK-HVANVVSVRVCRDQ-NRRSLGYAYINFSNPN 100
Query: 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIV 287
+ RAM +N RP+RI + + S + + +F+ NLD+ +
Sbjct: 101 DAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGN-------------IFIKNLDASI 147
Query: 288 TDEHLRELFSQYGQLVHVKIPA-----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 341
++ L E FS +G ++ K+ K GFVQF A+ A+ LNG + + +
Sbjct: 148 DNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQV 206
Score = 134 (52.2 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 45/192 (23%), Positives = 86/192 (44%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ +L + E L F G V++ V+ Q+G +GF+ F A ++
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFG-VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 144 NGTPMPNG-------------EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYML 190
NG + + E+ R + + + + +++ +L V D L
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERIN-RFEKSQGANLYLKNLDDSVDDEKL 348
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+E F + Y + +KV+++ G ++G+GFV + + E LRA++EMNG +P+ I
Sbjct: 349 KEMF-SEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIAL 406
Query: 251 ATNKKTVSASYQ 262
A K+ A Q
Sbjct: 407 AQRKEDRRAHLQ 418
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 255 (94.8 bits), Expect = 6.0e-21, P = 6.0e-21
Identities = 75/280 (26%), Positives = 138/280 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L+IGDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + +F+ +L + + L +TF A +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVGN--VFIKNLDDSIDNKALYDTFSA-FGD 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
KVV D R GYGFV F + RA+ MNG+ + R + +G +++
Sbjct: 125 ILSCKVVCDEYGSR--GYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELE 182
Query: 261 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP---AGKR--CGF 315
Y ++V + T V++ N + D+ L+E+FS +G + VK+ +G+ GF
Sbjct: 183 Y-GAKVMEF------TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGF 235
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
V + + A++A+ +NG ++ G+ + + GR+ + Q
Sbjct: 236 VNYGNHEEAQKAVTEMNGKEVNGRMVYV--GRAQKRIERQ 273
Score = 251 (93.4 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 74/263 (28%), Positives = 133/263 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G++++ KV+ ++ + GYGF+ F ++ A R +
Sbjct: 98 VGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR--GYGFVHFETQEAANRAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP--DHT-IFVGDLAADVTDYMLQETFRAR 197
QT NG + N + F ++ S E + T +++ + D+ D L+E F A
Sbjct: 156 QTMNGMLL-NDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSA- 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ +T KV++D +GR++G+GFV +G+ E +A+TEMNG + R + +G A +
Sbjct: 214 FGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIER 272
Query: 258 SASYQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----G 310
+ Q+ Q + ++V NLD + D+ LR+ FS YG + K+
Sbjct: 273 QGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHS 332
Query: 311 KRCGFVQFADRSCAEEALRMLNG 333
K GFV F+ A +A+ +NG
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNG 355
Score = 164 (62.8 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 53/192 (27%), Positives = 91/192 (47%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
R + P ++++GDL DVT+ ML E F P +V D T R+ GY ++ F +
Sbjct: 5 RAEYPLASLYIGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPA 63
Query: 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIV 287
+ RA+ MN RP+RI S ++ + +S N VF+ NLD +
Sbjct: 64 DAERALDTMNFEVIKGRPIRI---------MWSQRDPGLRKSG--VGN--VFIKNLDDSI 110
Query: 288 TDEHLRELFSQYGQLVHVKIPA---GKR-CGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343
++ L + FS +G ++ K+ G R GFV F + A A++ +NG L + + +
Sbjct: 111 DNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFV 170
Query: 344 SWGRSPSNKQAQ 355
+S ++ +
Sbjct: 171 GHFKSRRERELE 182
Score = 153 (58.9 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 54/197 (27%), Positives = 92/197 (46%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G ++VKV+ + +G+ G+GF+ + + A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
+ NG + NG + R GE KR + I +V +L +
Sbjct: 248 VTEMNGKEV-NGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + Y + KV+ + G +KG+GFV F E +A+TEMNG ST+P+
Sbjct: 307 DDRLRKEF-SPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERKAILTN 380
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 247 (92.0 bits), Expect = 7.0e-21, P = 7.0e-21
Identities = 74/280 (26%), Positives = 138/280 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + G +GY ++ F S A A R +
Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNGS-KGYAYVHFDSLAAANRAI 162
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRA 196
NG + N Q + R + A E R D T +FV + D+ D L+E F
Sbjct: 163 WHMNGVRL-NNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSG 221
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK-- 254
Y T+ KV+ D +G++KG+GFVR+ +A+ +++G + + + +G A K
Sbjct: 222 -YGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIE 279
Query: 255 --KTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL----VHVKIP 308
+ ++ ++ + P +++ NLD + DE L+E FS +G + V V++
Sbjct: 280 RLAELRRRFERLRLKEKSRPPG-VPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVG 338
Query: 309 AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348
GK G V F+ A +A+ +NG +G + + ++ G++
Sbjct: 339 QGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQA 378
Score = 219 (82.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 77/261 (29%), Positives = 123/261 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++GDL + E L F G + ++ R+ T GYG++ F A AE L T
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
N + NG+ FRL W+ ++ + IF+ +L + + L F A + +
Sbjct: 80 N-FDLINGKP-FRLMWSQ--PDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSA-FGNILS 134
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQN 263
KVV D G +KGY +V F + RA+ MNGV + R + +G + +A
Sbjct: 135 CKVVCDD-NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE--- 189
Query: 264 SQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQF 318
++ D T VFV N + + DE L+E+FS YG VK+ +GK GFV++
Sbjct: 190 ---VRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 319 ADRSCAEEALRMLNGTQLGGQ 339
A++A+ L+G + G+
Sbjct: 247 ETHEAAQKAVLDLHGKSINGK 267
Score = 143 (55.4 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 50/196 (25%), Positives = 90/196 (45%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG+K+ ++VGDL DVT+ ML + FR P + ++ D +T GYG+V F
Sbjct: 9 AGKKKKYLKA-ALYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSPLGYGYVNF 66
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
++ A+ MN + +P R+ S + ++ +S N +F+ NL
Sbjct: 67 RFPADAEWALNTMNFDLINGKPFRL---------MWSQPDDRLRKSG--VGN--IFIKNL 113
Query: 284 DSIVTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQ 339
D + + L LFS +G ++ K+ K +V F + A A+ +NG +L +
Sbjct: 114 DKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNR 173
Query: 340 NIRLSWGRSPSNKQAQ 355
+ + + P + A+
Sbjct: 174 QVYVGRFKFPEERAAE 189
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 254 (94.5 bits), Expect = 7.2e-21, P = 7.2e-21
Identities = 79/280 (28%), Positives = 140/280 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N M G Q R+ W+ G ++ + IF+ +L + + L +TF + + +
Sbjct: 70 DTMN-FEMLKG-QPIRIMWSQRDPGLRKSGVGN--IFIKNLEDSIDNKALYDTF-STFGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
KV D R G+GFV F +A+ MNG+ + R + +G +++ A
Sbjct: 125 ILSCKVACDEHGSR--GFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAE 182
Query: 261 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP---AG-KRC-GF 315
++ + T ++V NL V ++ L++LFSQ+G+++ VK+ +G RC GF
Sbjct: 183 L-GARALEF------TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGF 235
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
V F A++A+ +NG ++ G+ L GR+ + Q
Sbjct: 236 VNFEKHEEAQKAVVHMNGKEVSGR--LLYAGRAQKRVERQ 273
Score = 204 (76.9 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 72/285 (25%), Positives = 133/285 (46%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L+ +D L F+ G +++ KV ++ + G+GF+ F + A++ +
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP--DHT-IFVGDLAADVTDYMLQETFRAR 197
T NG + N + F ++ S E + T I+V +L DV + LQ+ F ++
Sbjct: 156 NTMNGMLL-NDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G ++ +GFV F E +A+ MNG S R + G A K+
Sbjct: 214 FGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRA-QKRVE 271
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---- 309
+ + Q D ++V NLD + D+ LR+ FS YG + K+
Sbjct: 272 RQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGH 331
Query: 310 GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 161 (61.7 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 51/188 (27%), Positives = 90/188 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D T R+ GY ++ F ++ R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI S ++ + +S N +F+ NL+ + ++
Sbjct: 68 ALDTMNFEMLKGQPIRI---------MWSQRDPGLRKSG--VGN--IFIKNLEDSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA---GKR-CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ G R GFV F A++A+ +NG L + + + +
Sbjct: 115 LYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK 174
Query: 348 SPSNKQAQ 355
S ++A+
Sbjct: 175 SRREREAE 182
Score = 151 (58.2 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 51/196 (26%), Positives = 90/196 (45%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E +++ +L +DE L F+ G++++VKV+R+ +G +GF+ F A++
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKA 247
Query: 140 LQTFNGTPMPN-----GEQNFRL---NWASFGAGEKRDDTPDH----TIFVGDLAADVTD 187
+ NG + G R+ N + + D ++V +L + D
Sbjct: 248 VVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + Y AKV+ + G +KG+GFV F E +A+TEMNG T+P+
Sbjct: 308 DKLRKEF-SPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 248 IGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 365 VALAQRKEERKAILTN 380
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 254 (94.5 bits), Expect = 7.8e-21, P = 7.8e-21
Identities = 76/280 (27%), Positives = 139/280 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---GKR--CGFVQ 317
A++ + N V++ N + D+ L+++FS+YG + +++ GK GFV
Sbjct: 185 ----ARAKEFTN---VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
F A+ A+ +NG ++ G+ I + GR+ + Q +
Sbjct: 238 FERHEDAQRAVDEMNGKEMNGKLIYV--GRAQKKVERQTE 275
Score = 227 (85.0 bits), Expect = 6.4e-18, P = 6.4e-18
Identities = 73/285 (25%), Positives = 136/285 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIF-SK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y + +V+ D G+++G+GFV F + RA+ EMNG + + + +G A KK
Sbjct: 214 YGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRA-QKKVE 271
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAG- 310
+ + Q D ++V NLD + DE LR+ FS +G + K+ G
Sbjct: 272 RQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGR 331
Query: 311 -KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 175 (66.7 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 55/190 (28%), Positives = 91/190 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F + +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPA-GAILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN RP+RI +++ S + S V +F+ NLD + ++
Sbjct: 68 ALDTMNFDVIKGRPVRI--MWSQR--DPSLRKSGVGN---------IFIKNLDKSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K GFV F + AE A+ +NG L + + + GR
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--GR 172
Query: 348 SPSNKQAQPD 357
S K+ + +
Sbjct: 173 FKSRKEREAE 182
Score = 167 (63.8 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 54/197 (27%), Positives = 95/197 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G ++++V+ + + G+ G+GF+ F A+R
Sbjct: 189 EFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG M NG+ + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEM-NGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV++D GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERQAHLTN 380
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 246 (91.7 bits), Expect = 9.1e-21, P = 9.1e-21
Identities = 73/280 (26%), Positives = 138/280 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
I ++I +L +D L F+ G +++ KV+ + G +GY ++ F S A A R +
Sbjct: 105 IGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCD-DNGS-KGYAYVHFDSLAAANRAI 162
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGE--KRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N Q + R + A E RD +FV + D+ D L+E F +
Sbjct: 163 WHMNGVRL-NNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELF-S 220
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK-- 254
Y T+ KV+ D +G++KG+GFVR+ +A+ +++G + + +G A K
Sbjct: 221 EYGPTESVKVIRDS-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIE 279
Query: 255 --KTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL----VHVKIP 308
+ ++ ++ + P +++ NLD + DE L+E FS +G + V V++
Sbjct: 280 RLAELRRRFERLRLKEKSRPPG-VPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVG 338
Query: 309 AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348
GK G + F+ A +A+ +NG +G + ++++ G++
Sbjct: 339 QGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQA 378
Score = 224 (83.9 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 78/261 (29%), Positives = 123/261 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++GDL + E L F G + ++ R+ T GYG++ F A AE L T
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
N + NG+ FRL W+ ++ + IF+ +L + + L F A + S
Sbjct: 80 N-FDLINGKP-FRLMWSQ--PDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSA-FGSILS 134
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQN 263
KVV D G +KGY +V F + RA+ MNGV + R + +G + +A
Sbjct: 135 CKVVCDD-NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE--- 189
Query: 264 SQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQF 318
++ D T VFV N + D+ L+ELFS+YG VK+ +GK GFV++
Sbjct: 190 ---VRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRY 246
Query: 319 ADRSCAEEALRMLNGTQLGGQ 339
A++A+ L+G + G+
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGK 267
Score = 142 (55.0 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 49/196 (25%), Positives = 89/196 (45%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG+K+ ++VGDL DVT+ ML + FR P + ++ D +T GYG+V F
Sbjct: 9 AGKKKKYLKA-ALYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSPLGYGYVNF 66
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
++ A+ MN + +P R+ S + ++ +S +F+ NL
Sbjct: 67 RFPADAEWALNTMNFDLINGKPFRL---------MWSQPDDRLRKSGIG----NIFIKNL 113
Query: 284 DSIVTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQ 339
D + + L LFS +G ++ K+ K +V F + A A+ +NG +L +
Sbjct: 114 DKSIDNRALFYLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNR 173
Query: 340 NIRLSWGRSPSNKQAQ 355
+ + + P + A+
Sbjct: 174 QVYVGRFKFPEERAAE 189
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 246 (91.7 bits), Expect = 9.1e-21, P = 9.1e-21
Identities = 73/280 (26%), Positives = 138/280 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + G +GY ++ F S A A R +
Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNGS-KGYAYVHFDSLAAANRAI 162
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRA 196
NG + N Q + R + A E R D T +FV ++ D+ D L+E F
Sbjct: 163 WHMNGVRL-NNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-C 220
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK-- 254
Y T+ KV+ D +G++KG+GFVR+ +A+ +++G + + +G A K
Sbjct: 221 EYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIE 279
Query: 255 --KTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL----VHVKIP 308
+ ++ ++ + P +++ NLD + DE L+E FS +G + V +++
Sbjct: 280 RLAELRRRFERLRLKEKSRPPG-VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVG 338
Query: 309 AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348
GK G V F+ A +A+ +NG +G + + ++ G++
Sbjct: 339 QGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQA 378
Score = 222 (83.2 bits), Expect = 4.3e-17, P = 4.3e-17
Identities = 77/261 (29%), Positives = 123/261 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++GDL + E L F G + ++ R+ T GYG++ F A AE L T
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
N + NG+ FRL W+ ++ + IF+ +L + + L F A + +
Sbjct: 80 N-FDLINGKP-FRLMWSQ--PDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSA-FGNILS 134
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQN 263
KVV D G +KGY +V F + RA+ MNGV + R + +G + +A
Sbjct: 135 CKVVCDD-NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE--- 189
Query: 264 SQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQF 318
++ D T VFV N+ + DE L+ELF +YG VK+ +GK GFV++
Sbjct: 190 ---VRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 319 ADRSCAEEALRMLNGTQLGGQ 339
A++A+ L+G + G+
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGK 267
Score = 143 (55.4 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 50/196 (25%), Positives = 90/196 (45%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG+K+ ++VGDL DVT+ ML + FR P + ++ D +T GYG+V F
Sbjct: 9 AGKKKKYLKA-ALYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSPLGYGYVNF 66
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
++ A+ MN + +P R+ S + ++ +S N +F+ NL
Sbjct: 67 RFPADAEWALNTMNFDLINGKPFRL---------MWSQPDDRLRKSG--VGN--IFIKNL 113
Query: 284 DSIVTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQ 339
D + + L LFS +G ++ K+ K +V F + A A+ +NG +L +
Sbjct: 114 DKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNR 173
Query: 340 NIRLSWGRSPSNKQAQ 355
+ + + P + A+
Sbjct: 174 QVYVGRFKFPEERAAE 189
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 253 (94.1 bits), Expect = 9.8e-21, P = 9.8e-21
Identities = 74/280 (26%), Positives = 137/280 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L+IGDL + E L F+ G +++++V R+ T + Y +I F A AER L
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + +F+ +L + + L +TF A + +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVGN--VFIKNLDESIDNKALYDTFSA-FGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
KVV D R GYGFV F RA+ MNG+ + R + +G +++
Sbjct: 125 ILSCKVVCDEHGSR--GYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELE 182
Query: 261 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGF 315
Y ++V + T V++ N + D+ LRE+FS +G + VK+ +G+ GF
Sbjct: 183 Y-GAKVMEF------TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGF 235
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
V + + A++A+ +NG ++ G+ I + + +Q++
Sbjct: 236 VNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSE 275
Score = 239 (89.2 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 72/263 (27%), Positives = 131/263 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ ++ + GYGF+ F + A R +
Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETHEAANRAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP--DHT-IFVGDLAADVTDYMLQETFRAR 197
QT NG + N + F ++ S E + T +++ + D+ D L+E F A
Sbjct: 156 QTMNGMLL-NDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSA- 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ +T KV++D +GR++G+GFV +G+ E +A++EMNG + R + +G A +
Sbjct: 214 FGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIER 272
Query: 258 SASYQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----G 310
+ + Q+ Q + ++V NLD + D+ LR+ F YG + K+
Sbjct: 273 QSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHS 332
Query: 311 KRCGFVQFADRSCAEEALRMLNG 333
K GFV F+ A +A+ +NG
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNG 355
Score = 154 (59.3 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 51/188 (27%), Positives = 87/188 (46%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P ++++GDL DVT+ ML E F P +V D T R+ Y ++ F ++ R
Sbjct: 9 PLASLYIGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLSYAYINFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN RP+RI S ++ + +S N VF+ NLD + ++
Sbjct: 68 ALDTMNFEVIKGRPIRI---------MWSQRDPGLRKSG--VGN--VFIKNLDESIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA---GKR-CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ G R GFV F A A++ +NG L + + + +
Sbjct: 115 LYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFK 174
Query: 348 SPSNKQAQ 355
S ++ +
Sbjct: 175 SRRERELE 182
Score = 153 (58.9 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 53/197 (26%), Positives = 93/197 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G ++VKV+ + +G+ G+GF+ + + A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKA 247
Query: 140 LQTFNGTPMPNGEQNF------RLNWAS-----FGA--GEKRDDTPDHTIFVGDLAADVT 186
+ NG + NG + R+ S F E+ + ++V +L +
Sbjct: 248 VSEMNGKEV-NGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F Y + AKV+ + G +KG+GFV F E +A+TEMNG ST+P+
Sbjct: 307 DDRLRKEFLP-YGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERKAILTN 380
>UNIPROTKB|Q49AS9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 EMBL:AC012468
HOVERGEN:HBG105006 RefSeq:NP_001029097.1 RefSeq:NP_003243.1
UniGene:Hs.501203 GeneID:7073 KEGG:hsa:7073 CTD:7073
HGNC:HGNC:11804 PharmGKB:PA36513 ChiTaRS:TIAL1 GenomeRNAi:7073
NextBio:27661 EMBL:BC030025 IPI:IPI01013673 SMR:Q49AS9
STRING:Q49AS9 Ensembl:ENST00000369092 UCSC:uc001lek.1
Uniprot:Q49AS9
Length = 252
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 60/184 (32%), Positives = 94/184 (51%)
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQN 263
A+VV D TG++KGYGFV F ++ + A+ M G + R +R AT K S Q
Sbjct: 3 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 62
Query: 264 SQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFV 316
+ Q + P N TV+ G + S +TD+ +R+ FS +GQ++ +++ K FV
Sbjct: 63 NNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFV 122
Query: 317 QFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ--AQPDPNQWN--AGYYGYAQG 371
+F+ A A+ +NGT + G ++ WG+ SP + Q D +QW + YG Q
Sbjct: 123 RFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQ 182
Query: 372 YENY 375
Y Y
Sbjct: 183 YGQY 186
Score = 113 (44.8 bits), Expect = 0.00036, P = 0.00036
Identities = 40/145 (27%), Positives = 69/145 (47%)
Query: 112 KVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASF------GAG 165
+V+++ TG+ +GYGF+ F ++ AE + G + G + R NWA+
Sbjct: 4 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL--GGRQIRTNWATRKPPAPKSTQ 61
Query: 166 EKR------DD-----TPDH-TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTG 213
E +D +P + T++ G +A+ +TD ++++TF S G + I R+
Sbjct: 62 ENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF-----SPFGQIMEI-RVFP 115
Query: 214 RTKGYGFVRFGDESEQLRAMTEMNG 238
KGY FVRF A+ +NG
Sbjct: 116 E-KGYSFVRFSTHESAAHAIVSVNG 139
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 76/280 (27%), Positives = 135/280 (48%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G ++++++ R+ T Y ++ F AE L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IFV +L + + L +T A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFVKNLDKSINNKALYDTVSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
VV D G +KGYGFV F RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCNVVCDE-NG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + PN V++ N + DE L++LF ++G + VK+ +GK GFV
Sbjct: 185 ----ARAKEFPN---VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
F A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 275
Score = 200 (75.5 bits), Expect = 3.9e-14, P = 3.9e-14
Identities = 63/232 (27%), Positives = 110/232 (47%)
Query: 106 GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS---- 161
G +++ V+ + + G +GYGF+ F + AER ++ NG + NG + F + S
Sbjct: 123 GNILSCNVVCD-ENGS-KGYGFVHFETHEAAERAIKKMNGMLL-NGRKVFVGQFKSRKER 179
Query: 162 -FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGF 220
G + + P+ +++ + D+ D L++ F ++ KV+ D +G++KG+GF
Sbjct: 180 EAELGARAKEFPN--VYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDE-SGKSKGFGF 235
Query: 221 VRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTV-- 278
V F + +A+ EMNG + + + +G A K + + D V
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN 295
Query: 279 -FVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAGKRCGFVQFADRSCAEEA 327
+V NLD + DE LR+ FS +G + K+ G+ GF F S EEA
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGF-GFVCFSSPEEA 346
Score = 158 (60.7 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 49/188 (26%), Positives = 85/188 (45%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P ++ D +T + Y +V F +
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V +FV NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPVRI--MWSQR--DPSLRKSGVGN---------IFVKNLDKSINNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + S +G ++ + K GFV F AE A++ +NG L G+ + + +
Sbjct: 115 LYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK 174
Query: 348 SPSNKQAQ 355
S ++A+
Sbjct: 175 SRKEREAE 182
Score = 113 (44.8 bits), Expect = 0.00070, P = 0.00070
Identities = 42/162 (25%), Positives = 78/162 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDHTI---FVGDLAADVT 186
+ NG + NG+Q + R E K+D + + +V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D L++ F + + + AKV+++ GR+KG+GFV F E
Sbjct: 307 DERLRKAF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEE 345
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 244 (91.0 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 63/207 (30%), Positives = 105/207 (50%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
T+FVG L+ ++ D L+ F GA+V+++R TG+++GYG+V F +S +A+
Sbjct: 169 TLFVGRLSWNIDDAWLKREFE-HIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALE 227
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDD--PNNTTVFVGNLDSIVTDEHL 292
EM G RP+ + +T K S S N + Q D P + T+F+GNL ++L
Sbjct: 228 EMQGKEIDGRPINLDMSTGKPHASKS-NNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNL 286
Query: 293 RELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346
+F +YG ++ ++P K G+VQF+ A+ AL +NG + G+ RL +
Sbjct: 287 FNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFS 346
Query: 347 RSPSNKQAQPDPNQWNAGYYGYAQGYE 373
+P + + N G+ G G E
Sbjct: 347 -TPRDNTNNNNNNNRRGGFGGGFGGRE 372
Score = 209 (78.6 bits), Expect = 4.6e-15, P = 4.6e-15
Identities = 52/196 (26%), Positives = 94/196 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E TL++G L + +D+ +L F H G V+ +VI + TG+ GYG+++F S++ AE+
Sbjct: 166 EPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKA 225
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT----------PDHTIFVGDLAADVTDYM 189
L+ G + N ++ A + +D P T+F+G+L+ +
Sbjct: 226 LEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDN 285
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
L F Y + +V T + KG+G+V+F E A+ MNG + RP R+
Sbjct: 286 LFNVF-GEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLD 344
Query: 250 PATNKKTVSASYQNSQ 265
+T + + + N++
Sbjct: 345 FSTPRDNTNNNNNNNR 360
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 244 (91.0 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 63/207 (30%), Positives = 105/207 (50%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
T+FVG L+ ++ D L+ F GA+V+++R TG+++GYG+V F +S +A+
Sbjct: 169 TLFVGRLSWNIDDAWLKREFE-HIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALE 227
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDD--PNNTTVFVGNLDSIVTDEHL 292
EM G RP+ + +T K S S N + Q D P + T+F+GNL ++L
Sbjct: 228 EMQGKEIDGRPINLDMSTGKPHASKS-NNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNL 286
Query: 293 RELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346
+F +YG ++ ++P K G+VQF+ A+ AL +NG + G+ RL +
Sbjct: 287 FNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFS 346
Query: 347 RSPSNKQAQPDPNQWNAGYYGYAQGYE 373
+P + + N G+ G G E
Sbjct: 347 -TPRDNTNNNNNNNRRGGFGGGFGGRE 372
Score = 209 (78.6 bits), Expect = 4.6e-15, P = 4.6e-15
Identities = 52/196 (26%), Positives = 94/196 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E TL++G L + +D+ +L F H G V+ +VI + TG+ GYG+++F S++ AE+
Sbjct: 166 EPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKA 225
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT----------PDHTIFVGDLAADVTDYM 189
L+ G + N ++ A + +D P T+F+G+L+ +
Sbjct: 226 LEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDN 285
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
L F Y + +V T + KG+G+V+F E A+ MNG + RP R+
Sbjct: 286 LFNVF-GEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLD 344
Query: 250 PATNKKTVSASYQNSQ 265
+T + + + N++
Sbjct: 345 FSTPRDNTNNNNNNNR 360
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 249 (92.7 bits), Expect = 2.9e-20, P = 2.9e-20
Identities = 74/281 (26%), Positives = 136/281 (48%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F G V +++V R+ T + GY ++ F + E+ L
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + G R+ W+ ++ T + +F+ +L + + L +TF A +
Sbjct: 141 LNYT-LIKGRP-CRIMWSQRDPSLRKMGTGN--VFIKNLDPAIDNKALHDTFSA-FGKIL 195
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE-MNGVFCSTRPMRIGPATNKKTVSASY 261
KV +D L G KGYGFV F D E A E +NG+ + + + +G VS
Sbjct: 196 SCKVAVDEL-GNAKGYGFVHF-DSVESANAAIEHVNGMLLNDKKVYVG-----HHVSRRE 248
Query: 262 QNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR-----CGFV 316
+ S+V N T V++ NLD+ +T++ +LF Q+G++ + + + GFV
Sbjct: 249 RQSKVEALK--ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFV 306
Query: 317 QFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
+A+ CA++A+ LN + G+ + + GR+ + + +
Sbjct: 307 NYANHECAQKAVDELNDKEYKGKKLYV--GRAQKKHEREEE 345
Score = 166 (63.5 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 60/284 (21%), Positives = 132/284 (46%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ F+ G++++ KV + + G +GYGF+ F S A ++
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDT--PDHT-IFVGDLAADVTDYMLQETFRARYPS 200
NG + N ++ + + S + + + + T +++ +L ++T+ + F ++
Sbjct: 229 NGMLL-NDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLF-GQFGE 286
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK----KT 256
+V D+ + +G+GFV + + +A+ E+N + + +G A K +
Sbjct: 287 ITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEE 345
Query: 257 VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---GKR- 312
+ Y+ ++ + + +F+ NL V DE L+ FS +G + KI GK
Sbjct: 346 LRKRYEQMKLEKMNKY-QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSK 404
Query: 313 -CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
GFV + A +A+ +N L G+ + ++ + +++Q
Sbjct: 405 GFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQ 448
Score = 139 (54.0 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 46/196 (23%), Positives = 92/196 (46%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L + E + F GE+ ++ ++++ Q + G+GF+ + + A++ +
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDEL 321
Query: 144 N-----GTPMPNG--------EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYML 190
N G + G E+ R + EK + +F+ +L +V D L
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKL-EKMNKYQGVNLFIKNLQDEVDDERL 380
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + + AK++ D G++KG+GFV + E +A+TEMN + +P+ +
Sbjct: 381 KAEFSA-FGTITSAKIMTDE-QGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 438
Query: 251 ATNKKTVSASYQNSQV 266
A +K V S +Q+
Sbjct: 439 A-QRKEVRRSQLEAQI 453
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 204 (76.9 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 64/243 (26%), Positives = 114/243 (46%)
Query: 123 EGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVG 179
+GYGF+ F ++ AER ++ NG + N + F R E + T +++
Sbjct: 106 KGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 164
Query: 180 DLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239
+ D+ D L++ F ++ KV+ D +G++KG+GFV F + +A+ EMNG
Sbjct: 165 NFGEDMDDERLKDLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGK 222
Query: 240 FCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLREL 295
+ + + +G A KK + + Q D ++V NLD + DE LR+
Sbjct: 223 ELNGKQIYVGRA-QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKE 281
Query: 296 FSQYGQLVHVKI--PAG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351
FS +G + K+ G K GFV F+ A +A+ +NG + + + ++ +
Sbjct: 282 FSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 341
Query: 352 KQA 354
+QA
Sbjct: 342 RQA 344
Score = 168 (64.2 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 157 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 215
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 216 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 274
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 275 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 331
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 332 YVALAQRKEERQAHLTN 348
Score = 167 (63.8 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 51/166 (30%), Positives = 86/166 (51%)
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
R PS + + VV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 89 RDPSLRKSGVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 146
Query: 257 VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR- 312
A A++ + N V++ N + DE L++LF ++G + VK+ +GK
Sbjct: 147 REAELG----ARAKEFTN---VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK 199
Query: 313 -CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
GFV F A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 200 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 243
Score = 97 (39.2 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FN 144
N
Sbjct: 72 MN 73
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 250 (93.1 bits), Expect = 3.0e-20, P = 3.0e-20
Identities = 71/281 (25%), Positives = 133/281 (47%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F+ G V +++V R+ T + GY ++ + + A E+ L+
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + G R+ W+ ++ T +F+ +L + + L +TF A + +
Sbjct: 122 LNYT-LIKGRP-CRIMWSQRDPALRK--TGQGNVFIKNLDVAIDNKALHDTFAA-FGNIL 176
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KV D G +KGYGFV + + +A+ +NG+ + + + +G KK + +
Sbjct: 177 SCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFD 235
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP----AGKR--CGFV 316
+ N T ++V N++ VTD+ R LF +YG + + GK GFV
Sbjct: 236 EMKA-------NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFV 288
Query: 317 QFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
F A +A++ LN + GQN+ + GR+ + + +
Sbjct: 289 NFTSHEDASKAVQELNEKEFHGQNLYV--GRAQKKHEREEE 327
Score = 201 (75.8 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 55/229 (24%), Positives = 109/229 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A + ++
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHV 209
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--TIFVGDLAADVTDYMLQETFRARYPST 201
NG + + + K D+ + I+V ++ +VTD + F +Y
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFE-KYGDV 268
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASY 261
+ + D+ TG+++G+GFV F + +A+ E+N + + +G A K
Sbjct: 269 TSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEEL 328
Query: 262 QNSQVAQSDDDPNN---TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 307
+ S A + + +++ NLD V DE LR+LFS++G + K+
Sbjct: 329 RKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKV 377
Score = 148 (57.2 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 46/193 (23%), Positives = 90/193 (46%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
+++VG+L VT+ ML E F ++ S +V D +T R+ GY +V + ++ +A+
Sbjct: 62 SLYVGELDPSVTEAMLFELF-SQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 120
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
E+N RP RI + + + Q + VF+ NLD + ++ L +
Sbjct: 121 ELNYTLIKGRPCRIMWSQRDPALRKTGQGN-------------VFIKNLDVAIDNKALHD 167
Query: 295 LFSQYGQLVHVKIPA-----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349
F+ +G ++ K+ K GFV + A +A++ +NG L + + +
Sbjct: 168 TFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPK 227
Query: 350 SNKQAQPDPNQWN 362
++Q++ D + N
Sbjct: 228 KDRQSKFDEMKAN 240
Score = 38 (18.4 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 306 KIPAGKRCGFVQFADRSCAEEALRMLN 332
K+ K GFV FA+ A +A+ +N
Sbjct: 428 KLGKSKGFGFVCFANPDDATKAVAEMN 454
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 248 (92.4 bits), Expect = 3.4e-20, P = 3.4e-20
Identities = 76/264 (28%), Positives = 132/264 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY + F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ +R + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRRSGVGN--VFIKNLNKTIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D G +KG+GFV F E RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE-NG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAEL- 183
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
++ + T V++ N + D+ L LF ++GQ++ VK+ GK GFV
Sbjct: 184 GTRTKEF------TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNI 341
F A++A+ +NG +L G++I
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKHI 261
Score = 218 (81.8 bits), Expect = 7.6e-16, P = 7.6e-16
Identities = 73/284 (25%), Positives = 134/284 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +G+GF+ F + AER +
Sbjct: 98 VGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGHGFVHFETEEAAERAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F + S E T + T +++ + + D L F R
Sbjct: 156 EKMNGMLL-NDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLF-GR 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK--K 255
+ KV+ D G++KG+GFV F + +A+ EMNG + + + +GPA K +
Sbjct: 214 FGQVLSVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDR 272
Query: 256 TVSASYQNSQVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-GKRC 313
+ + QV Q ++V NLD + DE L++ FS +G + K+ G R
Sbjct: 273 HIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRS 332
Query: 314 ---GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 333 KGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQA 376
Score = 168 (64.2 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 56/206 (27%), Positives = 98/206 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ LN F G+V++VKV+ + + G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDD------------TPDHTI-------FVGD 180
+ NG + NG+ + G +K+ D T D I +V +
Sbjct: 248 VDEMNGKEL-NGKHIY------VGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D LQ+ F + + + KV+ + GR+KG+GFV F E +A++EMNG
Sbjct: 301 LDDGIDDERLQKEF-SPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMNGRI 357
Query: 241 CSTRPMRIGPATNKKTVSASYQNSQV 266
+T+P+ + A K+ A N +
Sbjct: 358 VATKPLYVALAQRKEERQAHLTNQYI 383
Score = 166 (63.5 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 53/188 (28%), Positives = 89/188 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F + P +V D +T R+ GY V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSSAGPILS-IRVYRDVITRRSLGYASVNFEQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V VF+ NL+ + ++
Sbjct: 68 ALDTMNFDVIKGKPVRI--MWSQR--DPSLRRSGVGN---------VFIKNLNKTIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K GFV F AE A+ +NG L + + + +
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFK 174
Query: 348 SPSNKQAQ 355
S ++A+
Sbjct: 175 SRKEREAE 182
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 247 (92.0 bits), Expect = 4.2e-20, P = 4.2e-20
Identities = 75/280 (26%), Positives = 138/280 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + Q R+ W+ G ++ + IF+ +L + + L +TF + + +
Sbjct: 70 DTMNFEVIKG--QPIRIMWSQRDPGLRKSGVGN--IFIKNLEDSIDNKALYDTF-STFGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
KVV D R G+GFV F A++ MNG+ + R + +G +++
Sbjct: 125 ILSCKVVCDEHGSR--GFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRR----- 177
Query: 261 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAG--KRCGF 315
+V T ++V NL V ++ L++LFSQ+G+++ VK+ +G + GF
Sbjct: 178 --EREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGF 235
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
V F A++A+ +NG ++ G+ + + GR+ + Q
Sbjct: 236 VNFEKHEEAQKAVVNMNGREVSGRLLYV--GRAQKRVERQ 273
Score = 221 (82.9 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 74/285 (25%), Positives = 135/285 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L+ +D L F+ G +++ KV+ ++ + G+GF+ F + A+ +
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETHEAAQNAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
T NG + N + F ++ S E + T I+V +L DV + LQ+ F ++
Sbjct: 156 STMNGMLL-NDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G ++G+GFV F E +A+ MNG S R + +G A K+
Sbjct: 214 FGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRA-QKRVE 271
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---- 309
+ + Q D ++V NLD + DE LR+ FS YG + K+
Sbjct: 272 RQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGH 331
Query: 310 GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 166 (63.5 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 52/196 (26%), Positives = 91/196 (46%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E +++ +L +DE L F+ G++++VKV+R+ +G G+GF+ F A++
Sbjct: 189 EFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKA 247
Query: 140 LQTFNGTPMPN-----GEQNFRL---NWASFGAGEKRDDTPDH----TIFVGDLAADVTD 187
+ NG + G R+ N + + D ++V +L + D
Sbjct: 248 VVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + Y AKV+ + G +KG+GFV F E +A+TEMNG T+P+
Sbjct: 308 EKLRKEF-SPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 248 IGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 365 VALAQRKEERKAILTN 380
Score = 152 (58.6 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 50/188 (26%), Positives = 88/188 (46%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D T R+ GY ++ F ++ R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI S ++ + +S N +F+ NL+ + ++
Sbjct: 68 ALDTMNFEVIKGQPIRI---------MWSQRDPGLRKSG--VGN--IFIKNLEDSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA---GKR-CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ G R GFV F A+ A+ +NG L + + + +
Sbjct: 115 LYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFK 174
Query: 348 SPSNKQAQ 355
S ++ +
Sbjct: 175 SRREREVE 182
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 246 (91.7 bits), Expect = 5.9e-20, P = 5.9e-20
Identities = 75/282 (26%), Positives = 140/282 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + Q R+ W+ G ++ + IF+ +L + + L +TF + + +
Sbjct: 70 DTMNFEVIKG--QPIRIMWSQRDPGLRKSGVGN--IFIKNLEDSIDNKALYDTF-STFGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
KVV D R G+GFV F +A+T MNG+ + R + +G +++
Sbjct: 125 ILSCKVVCDDHGSR--GFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRR----- 177
Query: 261 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAG--KRCGF 315
+V T ++V NL V ++ L++LFS++G+++ VK+ +G + GF
Sbjct: 178 --EREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGF 235
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
V F A++A+ +NG ++ G+ + + GR+ + Q +
Sbjct: 236 VNFQKHEEAQKAVMDMNGKEVSGRLLYV--GRAQKRVERQSE 275
Score = 228 (85.3 bits), Expect = 5.1e-18, P = 5.1e-18
Identities = 77/285 (27%), Positives = 136/285 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L+ +D L F+ G +++ KV+ + + G+GF+ F + A++ +
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSR--GFGFVHFETHEAAQQAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
T NG + N + F ++ S E + T I+V +L DV + LQ+ F +R
Sbjct: 156 TTMNGMLL-NDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLF-SR 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G ++G+GFV F E +A+ +MNG S R + +G A K+
Sbjct: 214 FGKMLSVKVMRDD-SGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRA-QKRVE 271
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---- 309
S + Q D ++V NLD + DE LR+ FS YG + K+
Sbjct: 272 RQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGH 331
Query: 310 GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG LG + + ++ + ++A
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQRKEERKA 376
Score = 167 (63.8 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 53/196 (27%), Positives = 92/196 (46%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E +++ +L +DE L F+ G++++VKV+R+ +G G+GF+ F A++
Sbjct: 189 EFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKA 247
Query: 140 LQTFNGTPMPN-----GEQNFRLNWASFGAGE----KRDDTPDH---TIFVGDLAADVTD 187
+ NG + G R+ S K+D + ++V +L + D
Sbjct: 248 VMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + Y AKV+ + G +KG+GFV F E +A+TEMNG T+P+
Sbjct: 308 EKLRKEF-SPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLY 364
Query: 248 IGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 365 VALAQRKEERKAILTN 380
Score = 154 (59.3 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 50/188 (26%), Positives = 89/188 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D T R+ GY ++ F ++ R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI S ++ + +S N +F+ NL+ + ++
Sbjct: 68 ALDTMNFEVIKGQPIRI---------MWSQRDPGLRKSG--VGN--IFIKNLEDSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA---GKR-CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ G R GFV F A++A+ +NG L + + + +
Sbjct: 115 LYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFK 174
Query: 348 SPSNKQAQ 355
S ++ +
Sbjct: 175 SRREREVE 182
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 245 (91.3 bits), Expect = 6.9e-20, P = 6.9e-20
Identities = 74/280 (26%), Positives = 134/280 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G++++++V R+ T + GY +I F A AE L
Sbjct: 10 LASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + IF+ ++ + + L +TF A + +
Sbjct: 70 DTMNYEVIKG--RPIRIMWSQRDPGLRKSGVGN--IFIKNMDESIDNKALYDTFSA-FGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
KVV D G +KGYGFV F + RA+ MNG+ + R + +G ++K A
Sbjct: 125 ILSCKVVCDE-NG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAE 182
Query: 261 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR-----CGF 315
V T V++ N + E L+ +F+++G+ + V + +R GF
Sbjct: 183 MGAKAV-------EFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGF 235
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
V F + A A+ +NG +L G+ + + GR+ + Q
Sbjct: 236 VNFVNHGDARRAVTEMNGKELNGRVLYV--GRAQKRLERQ 273
Score = 218 (81.8 bits), Expect = 7.4e-16, P = 7.4e-16
Identities = 68/263 (25%), Positives = 124/263 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I ++ +D L F+ G +++ KV+ + + G +GYGF+ F ++ A R +
Sbjct: 98 VGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAANRAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP--DHT-IFVGDLAADVTDYMLQETFRAR 197
+T NG + N + F ++ S E + T +++ + D+ L+ F
Sbjct: 156 ETMNGMLL-NDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIF-TE 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T V+ D GR++G+GFV F + + RA+TEMNG + R + +G A +
Sbjct: 214 FGKTLSVCVMTDE-RGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLER 272
Query: 258 SASYQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----G 310
+ Q+ Q ++V NLD + DE LR+ F+ YG + K+
Sbjct: 273 QGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDGGHS 332
Query: 311 KRCGFVQFADRSCAEEALRMLNG 333
+ GFV F+ A +A+ +NG
Sbjct: 333 RGFGFVCFSSPEEATKAVTEMNG 355
Score = 167 (63.8 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 56/200 (28%), Positives = 93/200 (46%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D L F G+ ++V V+ +++ G+ G+GF+ F++ A R
Sbjct: 189 EFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDER-GRSRGFGFVNFVNHGDARRA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
+ NG + NG + R GE KR + I +V +L +
Sbjct: 248 VTEMNGKEL-NGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F A Y + AKV+ D G ++G+GFV F E +A+TEMNG ST+P+
Sbjct: 307 DEKLRKEF-APYGTITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 247 RIGPATNKKTVSASYQNSQV 266
+ A K+ A N +
Sbjct: 364 YVALAQRKEERKAILTNQYI 383
Score = 154 (59.3 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 49/188 (26%), Positives = 88/188 (46%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL ADVT+ ML + F +V D +T R+ GY ++ F ++
Sbjct: 9 PLASLYVGDLHADVTEAMLYQKFSPA-GQIMSIRVCRDVITRRSLGYAYINFQQPADAEC 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN RP+RI S ++ + +S N +F+ N+D + ++
Sbjct: 68 ALDTMNYEVIKGRPIRI---------MWSQRDPGLRKSG--VGN--IFIKNMDESIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ K GFV F + A A+ +NG L + + + +
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFK 174
Query: 348 SPSNKQAQ 355
S ++A+
Sbjct: 175 SRKEREAE 182
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 246 (91.7 bits), Expect = 7.5e-20, P = 7.5e-20
Identities = 72/297 (24%), Positives = 140/297 (47%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F+ G+V +++V R+ T + GY ++ + A ER L
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + G+ R+ W+ ++ T +F+ +L + + + L +TF A + +
Sbjct: 103 LNYT-LIKGKP-CRIMWSQRDPALRK--TGQGNVFIKNLDSAIDNKALHDTFAA-FGNIL 157
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KV D G +KGYGFV + A+ +NG+ + + + +G +KK + ++
Sbjct: 158 SCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE 216
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---GKR--CGFVQ 317
+ N T +++ N+D V DE R+LF ++G++ + GK GFV
Sbjct: 217 EMKA-------NFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVN 269
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD-PNQWNAGYYGYAQGYE 373
F+ A+ A+ +N ++ Q + + GR+ + + + Q+ A A Y+
Sbjct: 270 FSTHESAQAAVEEMNDKEVRSQKLYV--GRAQKKHEREEELRKQYEAARMEKASKYQ 324
Score = 166 (63.5 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 54/231 (23%), Positives = 111/231 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A ++
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDT--PDHT-IFVGDLAADVTDYMLQETFRARYPS 200
NG + N ++ F + S + + + + T I++ ++ +V D ++ F ++
Sbjct: 191 NGMLL-NDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFE-KFGE 248
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK----KT 256
A + D G+++G+GFV F A+ EMN ++ + +G A K +
Sbjct: 249 ITSATLSRDS-EGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEE 307
Query: 257 VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 307
+ Y+ +++ ++ ++V NL V D+ LRELF YG + K+
Sbjct: 308 LRKQYEAARMEKASKY-QGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKV 357
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 243 (90.6 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 76/280 (27%), Positives = 136/280 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N M G Q R+ W+ G +R + IF+ +L + + L +TF + + S
Sbjct: 70 DTMN-FEMIKG-QPIRIMWSHRDPGLRRSGMGN--IFIKNLENSIDNKALYDTF-STFGS 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
+KVV + R G+GFV F +A+ MNG+ + R + +G +++ A
Sbjct: 125 ILSSKVVYNEHGSR--GFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAE 182
Query: 261 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKRCGF 315
+ T ++V NL + ++ L++LFSQ+G+ VK+ + GF
Sbjct: 183 LGARALGF-------TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGF 235
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
+ F A++A+ +NG ++ GQ + + GR+ + Q
Sbjct: 236 INFEKHEEAQKAVDHMNGKEVSGQLLYV--GRAQKRAERQ 273
Score = 234 (87.4 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 72/285 (25%), Positives = 139/285 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L+ +D L F+ G +++ KV+ N+ + G+GF+ F + A++ + T
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSR--GFGFVHFETHEAAQKAINTM 158
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDH------TIFVGDLAADVTDYMLQETFRAR 197
NG + N + F F + +KR+ I+V +L D+ + LQ+ F ++
Sbjct: 159 NGMLL-NDRKVFV---GHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T+ KV+ D G+++G+GF+ F E +A+ MNG S + + +G A K+
Sbjct: 214 FGKTQSVKVMRDS-NGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRA-QKRAE 271
Query: 258 SASYQNSQVAQSDDDPNN----TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---- 309
+ + Q + N ++V NLD + D+ L+E+FS YG + K+
Sbjct: 272 RQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSH 331
Query: 310 GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 169 (64.5 bits), Expect = 8.1e-10, P = 8.1e-10
Identities = 54/192 (28%), Positives = 90/192 (46%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ +L+ MDE L F+ G+ +VKV+R+ GQ G+GFI F A++ +
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSN-GQSRGFGFINFEKHEEAQKAVDHM 251
Query: 144 NGTPMPN-----GEQNFRLNWAS-----FGA--GEKRDDTPDHTIFVGDLAADVTDYMLQ 191
NG + G R + F E+++ ++V +L + D L+
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLK 311
Query: 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251
E F + Y AKV+ + + +KG+GFV F E +A+TEMNG T+P+ + A
Sbjct: 312 EVF-STYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 252 TNKKTVSASYQN 263
K+ A N
Sbjct: 369 QRKEERKAILTN 380
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 242 (90.2 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 76/280 (27%), Positives = 135/280 (48%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G ++++++ R+ T Y ++ F AE L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IFV +L + + L +T A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFVKNLDKSINNKALYDTVSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
VV D G +KGYGFV F RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCNVVCDE-NG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + PN V++ N + DE L++LF ++G + VK+ +GK GFV
Sbjct: 185 ----ARAKEFPN---VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
F A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 275
Score = 213 (80.0 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 67/261 (25%), Positives = 124/261 (47%)
Query: 106 GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS---- 161
G +++ V+ + + G +GYGF+ F + AER ++ NG + NG + F + S
Sbjct: 123 GNILSCNVVCD-ENGS-KGYGFVHFETHEAAERAIKKMNGMLL-NGRKVFVGQFKSRKER 179
Query: 162 -FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGF 220
G + + P+ +++ + D+ D L++ F ++ KV+ D +G++KG+GF
Sbjct: 180 EAELGARAKEFPN--VYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDE-SGKSKGFGF 235
Query: 221 VRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTV-- 278
V F + +A+ EMNG + + + +G A K + + D V
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN 295
Query: 279 -FVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAG--KRCGFVQFADRSCAEEALRMLNG 333
+V NLD + DE LR+ FS +G + K+ G K GFV F+ A +A+ +NG
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 334 TQLGGQNIRLSWGRSPSNKQA 354
+ + + ++ + +QA
Sbjct: 356 RIVATKPLYVALAQRKEERQA 376
Score = 167 (63.8 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDHTI---FVGDLAADVT 186
+ NG + NG+Q + R E K+D + + +V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKAF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERQAYLTN 380
Score = 158 (60.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 49/188 (26%), Positives = 85/188 (45%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P ++ D +T + Y +V F +
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V +FV NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPVRI--MWSQR--DPSLRKSGVGN---------IFVKNLDKSINNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + S +G ++ + K GFV F AE A++ +NG L G+ + + +
Sbjct: 115 LYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK 174
Query: 348 SPSNKQAQ 355
S ++A+
Sbjct: 175 SRKEREAE 182
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 239 (89.2 bits), Expect = 1.7e-19, P = 1.7e-19
Identities = 67/218 (30%), Positives = 109/218 (50%)
Query: 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
+ D P T+FVG+L+ +V D ML E F+ T A+V+ DR +GR+KG+G+V F
Sbjct: 233 EESDKPS-TLFVGNLSWNVDDAMLAEEFKFCGTVTS-ARVITDRESGRSKGFGYVDFATP 290
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDD--DPNNTTVFVGNLD 284
E +A E G F R +++ +T K T S ++ + D P + T+FVGNL
Sbjct: 291 EEAEKAHGEKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSPESDTLFVGNLP 350
Query: 285 SIVTDEHLRELFSQYGQLVHVKIP----AGKRCGF--VQFADRSCAEEALRMLNGTQLGG 338
++ + FS+ ++ +++P +G+R GF V F A+ A LNG + G
Sbjct: 351 FDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSING 410
Query: 339 QNIRLSWGRSPSNKQAQPDPNQWNAGYYGYAQGYENYG 376
+N RL + + P P + + G+ G G +G
Sbjct: 411 RNCRLDY--------STPRPPREDGGFGGRGGGRGGFG 440
Score = 157 (60.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 48/181 (26%), Positives = 91/181 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
TL++G+L + +D+ L F G V + +VI ++++G+ +G+G+++F + AE+
Sbjct: 240 TLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGE 299
Query: 143 FNGTPMPNGE--QNFRLNWAS-----FGAGEKR-DDT--PDH-TIFVGDLAADVTDYMLQ 191
G + E +F A+ GA K+ DT P+ T+FVG+L D + +
Sbjct: 300 KQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSPESDTLFVGNLPFDADEDSVG 359
Query: 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251
F + K ++ ++ +GR KG+G+V F + A ++NG + R R+ +
Sbjct: 360 AFF-SEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGRNCRLDYS 418
Query: 252 T 252
T
Sbjct: 419 T 419
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 241 (89.9 bits), Expect = 1.8e-19, P = 1.8e-19
Identities = 74/280 (26%), Positives = 138/280 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + Q R+ W+ G ++ + +F+ +L + + L +TF + + +
Sbjct: 70 DTMNFEVIKG--QPIRIMWSQRDPGLRKSGVGN--VFIKNLEDSIDNKALYDTF-STFGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
KVV D R G+GFV F A+ MNG+ + R + +G +++ A
Sbjct: 125 ILSCKVVCDDHGSR--GFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAE 182
Query: 261 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAG--KRCGF 315
++ + T ++V NL V + L++LFSQ+G+++ VK+ +G + GF
Sbjct: 183 L-GARALEF------TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGF 235
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
V F A++A+ +NG ++ G+ + + GR+ + Q
Sbjct: 236 VNFEKHEDAQKAVTDMNGKEVSGRLLYV--GRAQKRVERQ 273
Score = 222 (83.2 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 73/285 (25%), Positives = 137/285 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L+ +D L F+ G +++ KV+ + + G+GF+ F + A+ +
Sbjct: 98 VGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSR--GFGFVHFETHEAAQNAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP--DHT-IFVGDLAADVTDYMLQETFRAR 197
+T NG + N + F ++ S E + T I+V +L DV + LQ+ F ++
Sbjct: 156 RTMNGMLL-NDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G ++G+GFV F + +A+T+MNG S R + +G A K+
Sbjct: 214 FGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRA-QKRVE 271
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---- 309
+ + Q D ++V NLD + DE LR+ F+ YG + K+
Sbjct: 272 RQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGGH 331
Query: 310 GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 175 (66.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 53/199 (26%), Positives = 92/199 (46%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E +++ +L +DE L F+ G++++VKV+R+ +G G+GF+ F A++
Sbjct: 189 EFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKA 247
Query: 140 LQTFNGTPMPN-----GEQNFRL---NWASFGAGEKRDDTPDH----TIFVGDLAADVTD 187
+ NG + G R+ N + + D ++V +L + D
Sbjct: 248 VTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F A Y AKV+ + G +KG+GFV F E +A+TEMNG T+P+
Sbjct: 308 EKLRKEF-APYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 248 IGPATNKKTVSASYQNSQV 266
+ A K+ A N +
Sbjct: 365 VALAQRKEERKAILTNQYI 383
Score = 163 (62.4 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 53/188 (28%), Positives = 90/188 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D T R+ GY ++ F ++ R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI S ++ + +S N VF+ NL+ + ++
Sbjct: 68 ALDTMNFEVIKGQPIRI---------MWSQRDPGLRKSG--VGN--VFIKNLEDSIDNKA 114
Query: 292 LRELFSQYGQLVHVKIPA---GKR-CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + FS +G ++ K+ G R GFV F A+ A+R +NG L + + + +
Sbjct: 115 LYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFK 174
Query: 348 SPSNKQAQ 355
S ++A+
Sbjct: 175 SRREREAE 182
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 187 (70.9 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 47/161 (29%), Positives = 83/161 (51%)
Query: 79 GEIRT-LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAE 137
GE +T L I L M + + + F GE+ + K++R+K TGQ GYGF+ ++ A
Sbjct: 38 GESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDAL 97
Query: 138 RVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
R + +FNG + N + ++++A D ++V + +T + L+ FR
Sbjct: 98 RAVSSFNGLRLQN--KTIKVSYAR----PSNDQIKGSNLYVSGIPKSMTLHELESIFRP- 150
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
+ ++++ D +TG +KG GFVRF + E A+ +NG
Sbjct: 151 FGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNG 191
Score = 158 (60.7 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 48/174 (27%), Positives = 87/174 (50%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE R+ + S + K+V D++TG++ GYGFV + E + LRA++ NG
Sbjct: 53 MTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNG------- 105
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
+R+ KT+ SY S+D + ++V + +T L +F +GQ++
Sbjct: 106 LRL----QNKTIKVSYARP----SNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITS 157
Query: 306 KIPA------GKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSN 351
+I + K GFV+F + A+ A++ LNG+ G + I + + +P++
Sbjct: 158 RILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQITVKFANNPAS 211
Score = 106 (42.4 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 37/107 (34%), Positives = 59/107 (55%)
Query: 250 PATNKKT--VSASYQNSQVAQSDD---DPNNTT---VFVGNLDSIVTDEHLRELFSQYGQ 301
PATN + ++A Q S ++ S P++T +FV NL S D L +LFSQ+G
Sbjct: 340 PATNGQVAGLAAHAQLSALSASVAATLPPSDTAGYCLFVYNLSSDTDDTLLWQLFSQFGA 399
Query: 302 LVHVKI--PAGKRC---GFVQFADRSCAEEALRMLNGTQLGGQNIRL 343
+V+VKI ++C FV ++ + A A+ LNGT L G+ +++
Sbjct: 400 IVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
Score = 105 (42.0 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYG 219
AS A DT + +FV +L++D D +L + F +++ + K++ D LT + KGY
Sbjct: 360 ASVAATLPPSDTAGYCLFVYNLSSDTDDTLLWQLF-SQFGAIVNVKILRD-LTQQCKGYA 417
Query: 220 FVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
FV + +E AM +NG + + +++
Sbjct: 418 FVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
Score = 82 (33.9 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ + M L + F G+++ +++ + TG +G GF+ F + A+ ++T
Sbjct: 130 LYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTL 189
Query: 144 NGTPMPNG 151
NG+ +P+G
Sbjct: 190 NGS-IPSG 196
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 240 (89.5 bits), Expect = 3.0e-19, P = 3.0e-19
Identities = 76/276 (27%), Positives = 131/276 (47%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L+IGDL + E L F+ G V++++V R+ + GY ++ F A AER L T
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + +G R+ W+ +R + IF+ +L + + + +TF + + +
Sbjct: 118 MNFEVI-HGRP-MRIMWSQRDPAARR--AGNGNIFIKNLDRVIDNKSVYDTF-SLFGNIL 172
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KV D G +KGYGFV F E A+ ++NG+ S + + +G K + +
Sbjct: 173 SCKVATDD-EGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVG-----KFQPRAQR 226
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQ 317
++ +S T VFV N + E L +FS++G++ + K GFV
Sbjct: 227 MKELGESG--LKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVA 284
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
FAD+ A +A+ LN + L G + +LS R+ +
Sbjct: 285 FADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSE 320
Score = 162 (62.1 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 60/284 (21%), Positives = 123/284 (43%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D + F+ G +++ KV + + G +GYGF+ F + A+ ++
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKV 205
Query: 144 NGTPMPNGEQNF-RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARYPST 201
NG + + + + + E + +T +FV + + L F +++
Sbjct: 206 NGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMF-SKFGEI 264
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP--ATNKKTVSA 259
A V+ D G+ KG+GFV F D+ +A+ ++N ++ A K SA
Sbjct: 265 TSAVVMTDA-QGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSA 323
Query: 260 SYQNSQVAQSDDDPNN---TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GK 311
+ A + ++V N++ + D+ LR+ FS +G + K+ K
Sbjct: 324 ELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSK 383
Query: 312 RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
GFV F A A+ +N +G + + ++ + +++AQ
Sbjct: 384 GFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQ 427
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 239 (89.2 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 68/276 (24%), Positives = 132/276 (47%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L ++E L F+ G+V +++V R+ + + GY ++ + E+ ++
Sbjct: 53 SLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEE 112
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N P+ + R+ W+ +R D IF+ +L + + L +TF A +
Sbjct: 113 LNYNPIEG--RPCRIMWSQRDPSARRSG--DGNIFIKNLHPAIDNKALHDTFSA-FGKIL 167
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KV D G++K +GFV + A+ +NG+ + R + +G +KK + ++
Sbjct: 168 SCKVATDEF-GQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFE 226
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV---KIPAGKR--CGFVQ 317
+ N T ++V N+D ++E +LFS +G++ + K GK GFV
Sbjct: 227 EMKA-------NFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVN 279
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
F D A +A+ LN ++ GQ I + GR+ ++
Sbjct: 280 FEDHESAVKAVEELNDKEINGQKIYV--GRAQKKRE 313
Score = 179 (68.1 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 61/284 (21%), Positives = 133/284 (46%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ F+ G++++ KV + + GQ + +GF+ + + AE ++
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETAEAAEAAIENV 200
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--TIFVGDLAADVTDYMLQETFRARYPST 201
NG + + E + + K ++ + I+V ++ + ++ ++ F P
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFS---PFG 257
Query: 202 KGAKVVIDR-LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT---- 256
K + +++ G++KG+GFV F D ++A+ E+N + + + +G A K+
Sbjct: 258 KITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEE 317
Query: 257 VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR- 312
+ Y+ ++ + +FV NLD + E L E F +G + K+ AGK
Sbjct: 318 LKKQYEAVRLEKLAKY-QGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSK 376
Query: 313 -CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
GFV F A +A+ +N + G+ + ++ + +++Q
Sbjct: 377 GFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQ 420
Score = 139 (54.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 50/192 (26%), Positives = 91/192 (47%)
Query: 88 DLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP 147
DL Y +E++ F+ G++ ++ + Q G+ +G+GF+ F A + ++ N
Sbjct: 241 DLNY-SEESF-EKLFSPFGKITSI-YLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKE 297
Query: 148 MPNGEQNF---------RLNWAS--FGAG--EKRDDTPDHTIFVGDLAADVTDYMLQETF 194
+ NG++ + RL + A EK +FV +L + L+E F
Sbjct: 298 I-NGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEF 356
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ + + AKV++D G++KG+GFV F E +A+TEMN + +P+ + A +
Sbjct: 357 KP-FGTITSAKVMVDE-AGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALA-QR 413
Query: 255 KTVSASYQNSQV 266
K V S Q+
Sbjct: 414 KDVRRSQLEQQI 425
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 239 (89.2 bits), Expect = 3.6e-19, P = 3.6e-19
Identities = 75/257 (29%), Positives = 128/257 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + ++ L F G+VV+V+V R+ T + GYG++ + + A R L
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + NG R+ ++ ++ + IF+ +L + L ETF A P
Sbjct: 106 LNFMAL-NGRA-IRVMYSVRDPSLRKSGVGN--IFIKNLDKSIDHKALHETFSAFGPILS 161
Query: 203 GAKVVIDRLTGRTKGYGFVRFG-DESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASY 261
KV +D +G++KGYGFV++ DE+ Q A+ ++NG+ + + + +GP +K
Sbjct: 162 -CKVAVDP-SGQSKGYGFVQYDTDEAAQ-GAIDKLNGMLLNDKQVYVGPFVHKL------ 212
Query: 262 QNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYG---QLVHVKIPAGKR--CGFV 316
Q S + T V+V NL ++DE L ++F ++G V ++ GK GFV
Sbjct: 213 ---QRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFV 269
Query: 317 QFADRSCAEEALRMLNG 333
F + A A+ LNG
Sbjct: 270 NFENSDDAARAVDALNG 286
Score = 226 (84.6 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 71/288 (24%), Positives = 141/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L+ F+ G +++ KV + +GQ +GYGF+++ + A+ +
Sbjct: 132 VGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAI 190
Query: 141 QTFNGTPMPNGEQ----NFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N +Q F +GEK T ++V +L+ ++D L + F
Sbjct: 191 DKLNGMLL-NDKQVYVGPFVHKLQRDPSGEKVKFT---NVYVKNLSESLSDEELNKVF-G 245
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
+ T ++ D G++KG+GFV F + + RA+ +NG + +G A K
Sbjct: 246 EFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSE 304
Query: 257 ----VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PA 309
+ ++ S + ++ D + ++V NLD VTD+ LRE F+ +G + K+ P+
Sbjct: 305 RETELKQKFEQS-LKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPS 363
Query: 310 G--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
G + GFV F+ A A+ +NG + + + ++ + +++A+
Sbjct: 364 GVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKAR 411
Score = 158 (60.7 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 53/197 (26%), Positives = 90/197 (45%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ +L + + LN F G + ++R+ + G+ +G+GF+ F + A R +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 144 NGTPMPN-----------GEQNFRLNWA-SFGAGEKRDDTPDHTIFVGDLAADVTDYMLQ 191
NG + E+ L E D + ++V +L VTD L+
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251
E F A + + KV+ D +G ++G GFV F E RA+TEMNG T+P+ + A
Sbjct: 345 EHF-APFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Query: 252 TNKKTVSASYQNSQVAQ 268
K+ A Q +Q +Q
Sbjct: 403 QRKEDRKARLQ-AQFSQ 418
Score = 118 (46.6 bits), Expect = 0.00053, P = 0.00053
Identities = 32/86 (37%), Positives = 50/86 (58%)
Query: 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKRC---GFVQFADRSCAEEALR 329
T+++VG+LD+ VTD L E F+Q GQ+V V++ +R G+V +A A AL
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 330 MLNGTQLGGQNIRLSWG-RSPSNKQA 354
LN L G+ IR+ + R PS +++
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKS 130
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 236 (88.1 bits), Expect = 7.1e-19, P = 7.1e-19
Identities = 71/265 (26%), Positives = 134/265 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL ++E+ L F+ G V++++V R+ T GY ++ F A AER + T
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + +G+ R+ W+ +R + IF+ +L + + + +TF + + +
Sbjct: 93 MNFEAL-HGKP-MRIMWSQRDPAMRRSGAGN--IFIKNLDKVIDNKSIYDTF-SLFGNIL 147
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KV ID G +KGYGFV F E A+ ++NG+ + + + +G K + +
Sbjct: 148 SCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVG-----KFQPRAQR 201
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA--GKR--CGFVQF 318
N ++ ++ N V+V N E L +LF+++G + ++ GK GFV F
Sbjct: 202 NRELGETAKQFTN--VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAF 259
Query: 319 ADRSCAEEALRMLNGTQLGGQNIRL 343
A+ AE A++ L+ + + G +++L
Sbjct: 260 ANPEEAETAVQALHDSTIEGTDLKL 284
Score = 149 (57.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 62/287 (21%), Positives = 123/287 (42%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D + F+ G +++ KV ++ G +GYGF+ F + A+ +Q
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKV 180
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTI--FVGDLAADVTDYMLQETFR---ARY 198
NG + G++ F F +R+ T F + D+ +ET A++
Sbjct: 181 NGMLLA-GKKVFV---GKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKF 236
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFG--DESEQ-LRAMTE--MNGVFCSTRPMRIGPATN 253
+ +V+ + G++KG+GFV F +E+E ++A+ + + G R +
Sbjct: 237 GNITSCEVMT--VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSE 294
Query: 254 KKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---- 309
+ A+ ++V NLD V D+ L++ F YG + K+
Sbjct: 295 RHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 354
Query: 310 -GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
K GFV F A A+ +N + + + ++ + +++AQ
Sbjct: 355 RSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQ 401
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 230 (86.0 bits), Expect = 8.9e-19, P = 8.9e-19
Identities = 74/272 (27%), Positives = 132/272 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ +L +D L F+ G+V++ KV R+ +G +GYGF++F S
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA-SGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 144 NGTPMPNGEQNFRL-NWASFGAGEK-RDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NGT + N Q+ + + S G +K R T ++V +L TD L+ F +
Sbjct: 92 NGTLIRN--QHIHVCPFVSRGQWDKSRVFT---NVYVKNLVETATDADLKRLF-GEFGEI 145
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA---TNK-KTV 257
A V+ D G+++ +GFV F + A+ +MNGV + + +G A TN+ + +
Sbjct: 146 TSAVVMKDG-EGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDL 204
Query: 258 SASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKR 312
A ++ ++ + ++V NLD V + L ELFS++G + K+ K
Sbjct: 205 KAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKG 264
Query: 313 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344
GFV+F+ A +A+ +NG +G + I +S
Sbjct: 265 VGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Score = 138 (53.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 48/182 (26%), Positives = 81/182 (44%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
+FV +L + + L + F A + KV D +G +KGYGFV+F + A
Sbjct: 33 VFVKNLDESIDNKQLCDMFSA-FGKVLSCKVARDA-SGVSKGYGFVQFYSDLSVYTACNF 90
Query: 236 MNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLREL 295
NG + + + P ++ + S+V T V+V NL TD L+ L
Sbjct: 91 HNGTLIRNQHIHVCPFVSR----GQWDKSRVF--------TNVYVKNLVETATDADLKRL 138
Query: 296 FSQYGQL---VHVKIPAGK--RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350
F ++G++ V +K GK R GFV F A A+ +NG + + + + + +
Sbjct: 139 FGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKT 198
Query: 351 NK 352
N+
Sbjct: 199 NR 200
Score = 116 (45.9 bits), Expect = 0.00042, P = 0.00042
Identities = 48/196 (24%), Positives = 81/196 (41%)
Query: 98 LNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-----GE 152
L F GE+ + V+++ + G+ +GF+ F A ++ NG + G
Sbjct: 135 LKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGR 193
Query: 153 QNFRLNW-----ASFGAGEK--RD--DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
+ N A F EK RD ++V +L V + L+E F + + +
Sbjct: 194 AQRKTNRTEDLKAKFEL-EKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELF-SEFGTITS 251
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQN 263
KV++ G +KG GFV F E +AM +MNG +P+ + A K+ Q
Sbjct: 252 CKVMVHS-NGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQ- 309
Query: 264 SQVAQSDDDPNNTTVF 279
+Q P+ +F
Sbjct: 310 TQFNNPPPSPHQQPIF 325
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 70/258 (27%), Positives = 124/258 (48%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G ++++++ R+ T Y ++ F AE L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IFV +L + + L +T A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFVKNLDKSINNKALYDTVSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
VV D G +KGYGFV F RA+ +MNG+ + R + +G ++K A
Sbjct: 127 SCNVVCDE-NG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELG 184
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
A++ + PN V++ N + DE L++LF ++G + VK+ +GK GFV
Sbjct: 185 ----ARAKEFPN---VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQ 335
F A++A+ +NG +
Sbjct: 238 FERHEDAQKAVDEMNGKE 255
Score = 158 (60.7 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 49/188 (26%), Positives = 85/188 (45%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P ++ D +T + Y +V F +
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ MN +P+RI +++ S + S V +FV NLD + ++
Sbjct: 68 ALDTMNFDVIKGKPVRI--MWSQR--DPSLRKSGVGN---------IFVKNLDKSINNKA 114
Query: 292 LRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
L + S +G ++ + K GFV F AE A++ +NG L G+ + + +
Sbjct: 115 LYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK 174
Query: 348 SPSNKQAQ 355
S ++A+
Sbjct: 175 SRKEREAE 182
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 230 (86.0 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 74/285 (25%), Positives = 135/285 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 34 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 91
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 92 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GK 149
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A KK
Sbjct: 150 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVE 207
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAG- 310
+ + Q D ++V NLD + DE LR+ FS +G + K+ G
Sbjct: 208 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 267
Query: 311 -KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 268 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 312
Score = 197 (74.4 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 66/227 (29%), Positives = 112/227 (49%)
Query: 136 AERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFR 195
AER L T N + G+ R+ W+ ++ + IF+ +L + + L +TF
Sbjct: 1 AERALDTMNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFS 56
Query: 196 ARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
A + + KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 57 A-FGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 113
Query: 256 TVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR 312
A A++ + N V++ N + DE L+ELF ++G + VK+ +GK
Sbjct: 114 EREAELG----ARAKEFTN---VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS 166
Query: 313 --CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
GFV F A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 167 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 211
Score = 168 (64.2 bits), Expect = 9.7e-10, P = 9.7e-10
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 125 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 183
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 184 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 242
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 243 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 299
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 300 YVALAQRKEERQAHLTN 316
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 228 (85.3 bits), Expect = 3.5e-18, P = 3.5e-18
Identities = 77/265 (29%), Positives = 128/265 (48%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ VV+V + RN TG+ Y +I F S A +
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 143 FNGTPMPNGEQNFRLNWASFG-AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
N + + G+ R+ W+ A +R T ++V +L + +T L+ F + S
Sbjct: 82 LNHSDL-KGKA-MRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMF-CPFGSI 138
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASY 261
KVV + G++KG+GFV+F E + A + ++G + + + NK
Sbjct: 139 LSCKVVEEN--GQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKD------ 190
Query: 262 QNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---GKR--CGFV 316
+ + +A + D +T V+V NL VTD+ L LFSQYG + V + G+ GFV
Sbjct: 191 ERAAMAGNQD---STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFV 247
Query: 317 QFADRSCAEEALRMLNGTQLGGQNI 341
F + A++A+ L G QLG + +
Sbjct: 248 NFCNPENAKKAMESLCGLQLGSKKL 272
Score = 225 (84.3 bits), Expect = 2.9e-17, P = 2.9e-17
Identities = 69/268 (25%), Positives = 133/268 (49%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ +L + + L F G +++ KV+ ++ GQ +G+GF++F + A
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARYPSTK 202
+G+ M G++ F + + D T ++V +L VTD L F ++Y +
Sbjct: 172 HGS-MVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLF-SQYGTVS 229
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK----KTVS 258
V+ D + GR++G+GFV F + +AM + G+ ++ + +G A K + +
Sbjct: 230 SVVVMRDGM-GRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLK 288
Query: 259 ASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKRC 313
+ ++ +A+ + +N ++V NL + + LRE+F YGQ+V K+ K
Sbjct: 289 QKFSDNFIAKPNMRWSN--LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGF 346
Query: 314 GFVQFADRSCAEEALRMLNGTQLGGQNI 341
GFV F++ +++A R LNG + G+ I
Sbjct: 347 GFVCFSNCEESKQAKRYLNGFLVDGKPI 374
Score = 124 (48.7 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 46/186 (24%), Positives = 89/186 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ +L + + L+T F+ G V +V V+R+ G+ G+GF+ F + A++ +++
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFGFVNFCNPENAKKAMESL 262
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRD-------DT----PD---HTIFVGDLAADVTDYM 189
G + G + + A E+R+ D P+ ++V +L+ + +
Sbjct: 263 CGLQL--GSKKLFVGKA-LKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETR 319
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
L+E F Y AKV+ GR+KG+GFV F + E +A +NG +P+ +
Sbjct: 320 LREIFGC-YGQIVSAKVMCHE-NGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVR 377
Query: 250 PATNKK 255
A K+
Sbjct: 378 VAERKE 383
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 227 (85.0 bits), Expect = 5.5e-18, P = 5.5e-18
Identities = 73/285 (25%), Positives = 135/285 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 53 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 110
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 111 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 168
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A KK
Sbjct: 169 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVE 226
Query: 258 SASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAG- 310
+ + Q D ++V NLD + DE LR+ FS +G + K+ G
Sbjct: 227 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 286
Query: 311 -KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 287 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 331
Score = 217 (81.4 bits), Expect = 9.3e-16, P = 9.3e-16
Identities = 69/239 (28%), Positives = 118/239 (49%)
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
GY ++ F A AER L T N + G+ R+ W+ ++ + IF+ +L
Sbjct: 8 GYAYVNFQQPADAERALDTMNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDK 63
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
+ + L +TF A + + KVV D G +KGYGFV F + RA+ +MNG+ +
Sbjct: 64 SIDNKALYDTFSA-FGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLND 120
Query: 244 RPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLV 303
R + +G ++K A A++ + N V++ N + DE L++LF ++G +
Sbjct: 121 RKVFVGRFKSRKEREAELG----ARAKEFTN---VYIKNFGEDMDDERLKDLFGKFGPAL 173
Query: 304 HVKI---PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
VK+ +GK GFV F A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 174 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 230
Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 144 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 202
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 203 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 261
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 262 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 318
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 319 YVALAQRKEERQAHLTN 335
Score = 124 (48.7 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 40/151 (26%), Positives = 71/151 (47%)
Query: 211 LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSD 270
+T R+ GY +V F ++ RA+ MN +P+RI +++ S + S V
Sbjct: 2 ITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI--MWSQR--DPSLRKSGVGN-- 55
Query: 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEE 326
+F+ NLD + ++ L + FS +G ++ K+ K GFV F + AE
Sbjct: 56 -------IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAER 108
Query: 327 ALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
A+ +NG L + + + GR S K+ + +
Sbjct: 109 AIEKMNGMLLNDRKVFV--GRFKSRKEREAE 137
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 196 (74.1 bits), Expect = 7.9e-18, Sum P(2) = 7.9e-18
Identities = 51/179 (28%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 55 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 112
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 113 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 167
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG S T P+ + A N S+ SQ+ QS
Sbjct: 168 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 226
Score = 193 (73.0 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 57/178 (32%), Positives = 92/178 (51%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE FR+ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 55 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 112
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 113 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 159
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 160 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 217
Score = 121 (47.7 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 37/122 (30%), Positives = 60/122 (49%)
Query: 249 GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 308
GP++N + + Q A +DD + T + V L +T E R LF G++ K+
Sbjct: 21 GPSSNNRNCPSPMQTG--AATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 76
Query: 309 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 362
K G FV + D AE+A+ LNG +L + I++S+ R PS+ + D N +
Sbjct: 77 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-DANLYV 134
Query: 363 AG 364
+G
Sbjct: 135 SG 136
Score = 98 (39.6 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 261 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 319
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 320 DEAAMAIASLNGYRLGDRVLQVSFKTNK 347
Score = 89 (36.4 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 132 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 191
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 192 NGQK-PSG 198
Score = 73 (30.8 bits), Expect = 7.9e-18, Sum P(2) = 7.9e-18
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 330 NGYRLGDRVLQVSFKTNKAHK 350
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 196 (74.1 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 51/179 (28%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 114
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 115 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 169
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG S T P+ + A N S+ SQ+ QS
Sbjct: 170 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 228
Score = 193 (73.0 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 57/178 (32%), Positives = 92/178 (51%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE FR+ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 114
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 115 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 162 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 121 (47.7 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 37/122 (30%), Positives = 60/122 (49%)
Query: 249 GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 308
GP++N + + Q A +DD + T + V L +T E R LF G++ K+
Sbjct: 23 GPSSNNRNCPSPMQTG--AATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 78
Query: 309 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 362
K G FV + D AE+A+ LNG +L + I++S+ R PS+ + D N +
Sbjct: 79 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-DANLYV 136
Query: 363 AG 364
+G
Sbjct: 137 SG 138
Score = 98 (39.6 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 276 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 334
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 335 DEAAMAIASLNGYRLGDRVLQVSFKTNK 362
Score = 89 (36.4 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 194 NGQK-PSG 200
Score = 73 (30.8 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 196 (74.1 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 51/179 (28%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 114
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 115 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 169
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG S T P+ + A N S+ SQ+ QS
Sbjct: 170 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 228
Score = 193 (73.0 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 57/178 (32%), Positives = 92/178 (51%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE FR+ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 114
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 115 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 162 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 121 (47.7 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 37/122 (30%), Positives = 60/122 (49%)
Query: 249 GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 308
GP++N + + Q A +DD + T + V L +T E R LF G++ K+
Sbjct: 23 GPSSNNRNCPSPMQTG--AATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 78
Query: 309 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 362
K G FV + D AE+A+ LNG +L + I++S+ R PS+ + D N +
Sbjct: 79 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-DANLYV 136
Query: 363 AG 364
+G
Sbjct: 137 SG 138
Score = 98 (39.6 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 276 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 334
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 335 DEAAMAIASLNGYRLGDRVLQVSFKTNK 362
Score = 89 (36.4 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 194 NGQK-PSG 200
Score = 73 (30.8 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 196 (74.1 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 51/179 (28%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 119
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 120 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 174
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG S T P+ + A N S+ SQ+ QS
Sbjct: 175 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 233
Score = 193 (73.0 bits), Expect = 4.0e-13, P = 4.0e-13
Identities = 57/178 (32%), Positives = 92/178 (51%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE FR+ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 119
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 120 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 167 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
Score = 121 (47.7 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 37/122 (30%), Positives = 60/122 (49%)
Query: 249 GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 308
GP++N + + Q A +DD + T + V L +T E R LF G++ K+
Sbjct: 28 GPSSNNRNCPSPMQTG--ATTDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 83
Query: 309 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 362
K G FV + D AE+A+ LNG +L + I++S+ R PS+ + D N +
Sbjct: 84 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-DANLYV 141
Query: 363 AG 364
+G
Sbjct: 142 SG 143
Score = 98 (39.6 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 281 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 339
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 340 DEAAMAIASLNGYRLGDRVLQVSFKTNK 367
Score = 89 (36.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 199 NGQK-PSG 205
Score = 73 (30.8 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 350 NGYRLGDRVLQVSFKTNKAHK 370
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 196 (74.1 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 51/179 (28%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG S T P+ + A N S+ SQ+ QS
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 221
Score = 193 (73.0 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 57/178 (32%), Positives = 92/178 (51%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE FR+ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 50 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 108 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 212
Score = 121 (47.7 bits), Expect = 0.00010, P = 0.00010
Identities = 37/122 (30%), Positives = 60/122 (49%)
Query: 249 GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 308
GP++N + + Q A +DD + T + V L +T E R LF G++ K+
Sbjct: 16 GPSSNNRNCPSPMQTG--AATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 71
Query: 309 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 362
K G FV + D AE+A+ LNG +L + I++S+ R PS+ + D N +
Sbjct: 72 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-DANLYV 129
Query: 363 AG 364
+G
Sbjct: 130 SG 131
Score = 98 (39.6 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 283 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 341
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 342 DEAAMAIASLNGYRLGDRVLQVSFKTNK 369
Score = 89 (36.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 187 NGQK-PSG 193
Score = 73 (30.8 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 196 (74.1 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 51/179 (28%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG S T P+ + A N S+ SQ+ QS
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 221
Score = 193 (73.0 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 57/178 (32%), Positives = 92/178 (51%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE FR+ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 50 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 108 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 212
Score = 121 (47.7 bits), Expect = 0.00010, P = 0.00010
Identities = 37/122 (30%), Positives = 60/122 (49%)
Query: 249 GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 308
GP++N + + Q A +DD + T + V L +T E R LF G++ K+
Sbjct: 16 GPSSNNRNCPSPMQTG--AATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 71
Query: 309 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 362
K G FV + D AE+A+ LNG +L + I++S+ R PS+ + D N +
Sbjct: 72 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-DANLYV 129
Query: 363 AG 364
+G
Sbjct: 130 SG 131
Score = 98 (39.6 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 283 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 341
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 342 DEAAMAIASLNGYRLGDRVLQVSFKTNK 369
Score = 89 (36.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 187 NGQK-PSG 193
Score = 73 (30.8 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 196 (74.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 51/179 (28%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 114
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 115 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 169
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG S T P+ + A N S+ SQ+ QS
Sbjct: 170 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 228
Score = 193 (73.0 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 57/178 (32%), Positives = 92/178 (51%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE FR+ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 114
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 115 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 162 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 121 (47.7 bits), Expect = 0.00010, P = 0.00010
Identities = 37/122 (30%), Positives = 60/122 (49%)
Query: 249 GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 308
GP++N + + Q A +DD + T + V L +T E R LF G++ K+
Sbjct: 23 GPSSNNRNCPSPMQTG--ATTDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 78
Query: 309 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 362
K G FV + D AE+A+ LNG +L + I++S+ R PS+ + D N +
Sbjct: 79 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-DANLYV 136
Query: 363 AG 364
+G
Sbjct: 137 SG 138
Score = 98 (39.6 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 290 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 348
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 349 DEAAMAIASLNGYRLGDRVLQVSFKTNK 376
Score = 89 (36.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 194 NGQK-PSG 200
Score = 73 (30.8 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 196 (74.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 51/179 (28%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 114
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 115 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 169
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG S T P+ + A N S+ SQ+ QS
Sbjct: 170 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 228
Score = 193 (73.0 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 57/178 (32%), Positives = 92/178 (51%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE FR+ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 114
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 115 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 162 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 121 (47.7 bits), Expect = 0.00010, P = 0.00010
Identities = 37/122 (30%), Positives = 60/122 (49%)
Query: 249 GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 308
GP++N + + Q A +DD + T + V L +T E R LF G++ K+
Sbjct: 23 GPSSNNRNCPSPMQTG--AATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 78
Query: 309 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 362
K G FV + D AE+A+ LNG +L + I++S+ R PS+ + D N +
Sbjct: 79 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-DANLYV 136
Query: 363 AG 364
+G
Sbjct: 137 SG 138
Score = 98 (39.6 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 290 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 348
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 349 DEAAMAIASLNGYRLGDRVLQVSFKTNK 376
Score = 89 (36.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 194 NGQK-PSG 200
Score = 73 (30.8 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 196 (74.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 51/179 (28%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 73 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 130
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 131 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 185
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG S T P+ + A N S+ SQ+ QS
Sbjct: 186 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 244
Score = 193 (73.0 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 57/178 (32%), Positives = 92/178 (51%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE FR+ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 73 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 130
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 131 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 177
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 178 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 235
Score = 121 (47.7 bits), Expect = 0.00010, P = 0.00010
Identities = 37/122 (30%), Positives = 60/122 (49%)
Query: 249 GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 308
GP++N + + Q A +DD + T + V L +T E R LF G++ K+
Sbjct: 39 GPSSNNRNCPSPMQTG--AATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 94
Query: 309 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 362
K G FV + D AE+A+ LNG +L + I++S+ R PS+ + D N +
Sbjct: 95 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-DANLYV 152
Query: 363 AG 364
+G
Sbjct: 153 SG 154
Score = 98 (39.6 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 292 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 350
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 351 DEAAMAIASLNGYRLGDRVLQVSFKTNK 378
Score = 89 (36.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 150 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 209
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 210 NGQK-PSG 216
Score = 73 (30.8 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 361 NGYRLGDRVLQVSFKTNKAHK 381
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 190 (71.9 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 55/191 (28%), Positives = 96/191 (50%)
Query: 79 GEI-RT-LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
G+I RT L + L M + L + F+ GEV + K+IR+K G GYGF+ +++ A
Sbjct: 15 GDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
ER + T NG + + + ++++A + D +++ L +T +++ F +
Sbjct: 75 ERAINTLNGLRLQS--KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-S 127
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
R+ ++V++D+ TG ++G F+RF SE A+T NG P P T K
Sbjct: 128 RFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPPGSSEPITVKFA 184
Query: 257 VSASYQNSQVA 267
+ + QN VA
Sbjct: 185 ANPN-QNKNVA 194
Score = 147 (56.8 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 49/198 (24%), Positives = 96/198 (48%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
A + R D + V L ++T L+ F + + AK++ D++ G + GYGFV +
Sbjct: 10 AEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
+ RA+ +NG +R+ KT+ SY ++ D N +++ L
Sbjct: 69 VTAKDAERAINTLNG-------LRL----QSKTIKVSYARPS-SEVIKDAN---LYISGL 113
Query: 284 DSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLG 337
+T + + ++FS++G++++ ++ + G F++F RS AEEA+ NG +
Sbjct: 114 PRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPP 173
Query: 338 GQN--IRLSWGRSPS-NK 352
G + I + + +P+ NK
Sbjct: 174 GSSEPITVKFAANPNQNK 191
Score = 113 (44.8 bits), Expect = 0.00063, P = 0.00063
Identities = 34/114 (29%), Positives = 55/114 (48%)
Query: 257 VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR 312
+S Y++ D T + V L +T + LR LFS G++ K+ AG
Sbjct: 1 MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 313 CG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG 364
G FV + AE A+ LNG +L + I++S+ R PS++ + D N + +G
Sbjct: 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR-PSSEVIK-DANLYISG 112
Score = 76 (31.8 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + S+K
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 196 (74.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 51/179 (28%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 61 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 118
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 119 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 173
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG S T P+ + A N S+ SQ+ QS
Sbjct: 174 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 232
Score = 193 (73.0 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 57/178 (32%), Positives = 92/178 (51%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE FR+ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 61 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 118
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 119 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 165
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 166 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 223
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 37/122 (30%), Positives = 60/122 (49%)
Query: 249 GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 308
GP++N + + Q A +DD + T + V L +T E R LF G++ K+
Sbjct: 27 GPSSNNRNCPSPMQTG--AATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 82
Query: 309 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 362
K G FV + D AE+A+ LNG +L + I++S+ R PS+ + D N +
Sbjct: 83 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-DANLYV 140
Query: 363 AG 364
+G
Sbjct: 141 SG 142
Score = 98 (39.6 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 294 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 352
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 353 DEAAMAIASLNGYRLGDRVLQVSFKTNK 380
Score = 89 (36.4 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 138 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 197
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 198 NGQK-PSG 204
Score = 73 (30.8 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 363 NGYRLGDRVLQVSFKTNKAHK 383
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 196 (74.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 51/179 (28%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 119
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 120 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 174
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG S T P+ + A N S+ SQ+ QS
Sbjct: 175 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 233
Score = 193 (73.0 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 57/178 (32%), Positives = 92/178 (51%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE FR+ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 119
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 120 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 167 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 37/122 (30%), Positives = 60/122 (49%)
Query: 249 GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 308
GP++N + + Q A +DD + T + V L +T E R LF G++ K+
Sbjct: 28 GPSSNNRNCPSPMQTG--ATTDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 83
Query: 309 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 362
K G FV + D AE+A+ LNG +L + I++S+ R PS+ + D N +
Sbjct: 84 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-DANLYV 141
Query: 363 AG 364
+G
Sbjct: 142 SG 143
Score = 98 (39.6 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 295 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 353
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 354 DEAAMAIASLNGYRLGDRVLQVSFKTNK 381
Score = 89 (36.4 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 199 NGQK-PSG 205
Score = 73 (30.8 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 196 (74.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 51/179 (28%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 119
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 120 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 174
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG S T P+ + A N S+ SQ+ QS
Sbjct: 175 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 233
Score = 193 (73.0 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 57/178 (32%), Positives = 92/178 (51%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE FR+ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 119
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 120 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 167 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 37/122 (30%), Positives = 60/122 (49%)
Query: 249 GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 308
GP++N + + Q A +DD + T + V L +T E R LF G++ K+
Sbjct: 28 GPSSNNRNCPSPMQTG--AATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 83
Query: 309 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 362
K G FV + D AE+A+ LNG +L + I++S+ R PS+ + D N +
Sbjct: 84 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-DANLYV 141
Query: 363 AG 364
+G
Sbjct: 142 SG 143
Score = 98 (39.6 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 295 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 353
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 354 DEAAMAIASLNGYRLGDRVLQVSFKTNK 381
Score = 89 (36.4 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 199 NGQK-PSG 205
Score = 73 (30.8 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 189 (71.6 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 49/175 (28%), Positives = 89/175 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L ++T +++ F +R+ ++V++D+ T
Sbjct: 89 KTIKVSYAR----PSSEVIKDANLYISGLPRNMTQKDVEDMF-SRFGRIINSRVLVDQTT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVA 267
G ++G F+RF SE A+T NG P P T K + + QN VA
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAITSFNG---HKPPGSSEPITVKFAANPN-QNKNVA 194
Score = 152 (58.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 50/198 (25%), Positives = 97/198 (48%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
A + RDD + V L ++T L+ F + + AK++ D++ G + GYGFV +
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
+ RA+ +NG +R+ KT+ SY ++ D N +++ L
Sbjct: 69 VTAKDAERAINTLNG-------LRL----QSKTIKVSYARPS-SEVIKDAN---LYISGL 113
Query: 284 DSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLG 337
+T + + ++FS++G++++ ++ + G F++F RS AEEA+ NG +
Sbjct: 114 PRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPP 173
Query: 338 GQN--IRLSWGRSPS-NK 352
G + I + + +P+ NK
Sbjct: 174 GSSEPITVKFAANPNQNK 191
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 35/114 (30%), Positives = 56/114 (49%)
Query: 257 VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR 312
+S Y++ DD T + V L +T + LR LFS G++ K+ AG
Sbjct: 1 MSNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 313 CG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG 364
G FV + AE A+ LNG +L + I++S+ R PS++ + D N + +G
Sbjct: 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR-PSSEVIK-DANLYISG 112
Score = 92 (37.4 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 90 (36.7 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 305 LNGYRLGDKILQVSFKTNK 323
Score = 76 (31.8 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + S+K
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 224 (83.9 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 67/220 (30%), Positives = 116/220 (52%)
Query: 166 EKRDDTPDH-TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFG 224
+K ++T + TIFVG L+ + D L++ F GA+V+ +R T R++GYG+V F
Sbjct: 159 QKNEETEEPATIFVGRLSWSIDDEWLKKEFE-HIGGVIGARVIYERGTDRSRGYGYVDFE 217
Query: 225 DESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPN--NTTVFVGN 282
++S +A+ EM G RP+ +T+K + N + + D P+ + T+F+GN
Sbjct: 218 NKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGN----NDRAKKFGDTPSEPSDTLFLGN 273
Query: 283 LDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQL 336
L + + ELF+++G++V V+IP K G+VQF++ A++AL L G +
Sbjct: 274 LSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYI 333
Query: 337 GGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGYAQGYENYG 376
+ +RL + + P PN N G G ++G+ G
Sbjct: 334 DNRPVRLDF--------SSPRPN--NDGGRGGSRGFGGRG 363
Score = 190 (71.9 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 47/177 (26%), Positives = 92/177 (51%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E T+++G L + +D+ +L F H G V+ +VI + T + GYG+++F +++ AE+
Sbjct: 166 EPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKA 225
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAG-----EKRDDTPDH---TIFVGDLAADVTDYMLQ 191
+Q G + N ++ S AG +K DTP T+F+G+L+ + +
Sbjct: 226 IQEMQGKEIDGRPINCDMS-TSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIF 284
Query: 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
E F A++ ++ T + KG+G+V+F + + +A+ + G + RP+R+
Sbjct: 285 ELF-AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRL 340
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 190 (71.9 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 55/191 (28%), Positives = 96/191 (50%)
Query: 79 GEI-RT-LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
G+I RT L + L M + L + F+ GEV + K+IR+K G GYGF+ +++ A
Sbjct: 42 GDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 101
Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
ER + T NG + + + ++++A + D +++ L +T +++ F +
Sbjct: 102 ERAINTLNGLRLQS--KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-S 154
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
R+ ++V++D+ TG ++G F+RF SE A+T NG P P T K
Sbjct: 155 RFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPPGSSEPITVKFA 211
Query: 257 VSASYQNSQVA 267
+ + QN VA
Sbjct: 212 ANPN-QNKNVA 221
Score = 147 (56.8 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 49/198 (24%), Positives = 96/198 (48%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
A + R D + V L ++T L+ F + + AK++ D++ G + GYGFV +
Sbjct: 37 AEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNY 95
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
+ RA+ +NG +R+ KT+ SY ++ D N +++ L
Sbjct: 96 VTAKDAERAINTLNG-------LRL----QSKTIKVSYARPS-SEVIKDAN---LYISGL 140
Query: 284 DSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLG 337
+T + + ++FS++G++++ ++ + G F++F RS AEEA+ NG +
Sbjct: 141 PRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPP 200
Query: 338 GQN--IRLSWGRSPS-NK 352
G + I + + +P+ NK
Sbjct: 201 GSSEPITVKFAANPNQNK 218
Score = 123 (48.4 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 36/117 (30%), Positives = 57/117 (48%)
Query: 254 KKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PA 309
K T+S Y++ D T + V L +T + LR LFS G++ K+ A
Sbjct: 25 KNTMSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 84
Query: 310 GKRCG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG 364
G G FV + AE A+ LNG +L + I++S+ R PS++ + D N + +G
Sbjct: 85 GHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR-PSSEVIK-DANLYISG 139
Score = 76 (31.8 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + S+K
Sbjct: 333 NGYRLGDKILQVSFKTNKSHK 353
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 188 (71.2 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 49/175 (28%), Positives = 88/175 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F +R+ ++V++D+ T
Sbjct: 89 KTIKVSYAR----PSSEVIKDANLYISGLPRSMTQKDVEDMF-SRFGRIINSRVLVDQTT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVA 267
G ++G F+RF SE A+T NG P P T K + + QN VA
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAITNFNG---HKPPGSSEPITVKFAANPN-QNKNVA 194
Score = 152 (58.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 50/198 (25%), Positives = 97/198 (48%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
A + RDD + V L ++T L+ F + + AK++ D++ G + GYGFV +
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
+ RA+ +NG +R+ KT+ SY ++ D N +++ L
Sbjct: 69 VTAKDAERAINTLNG-------LRL----QSKTIKVSYARPS-SEVIKDAN---LYISGL 113
Query: 284 DSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLG 337
+T + + ++FS++G++++ ++ + G F++F RS AEEA+ NG +
Sbjct: 114 PRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPP 173
Query: 338 GQN--IRLSWGRSPS-NK 352
G + I + + +P+ NK
Sbjct: 174 GSSEPITVKFAANPNQNK 191
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 35/114 (30%), Positives = 56/114 (49%)
Query: 257 VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR 312
+S Y++ DD T + V L +T + LR LFS G++ K+ AG
Sbjct: 1 MSNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 313 CG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG 364
G FV + AE A+ LNG +L + I++S+ R PS++ + D N + +G
Sbjct: 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR-PSSEVIK-DANLYISG 112
Score = 92 (37.4 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + F
Sbjct: 108 LYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 90 (36.7 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 305 LNGYRLGDKILQVSFKTNK 323
Score = 76 (31.8 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + S+K
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 193 (73.0 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 50/179 (27%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 119
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 120 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 174
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG S T P+ + A N ++ SQ+ QS
Sbjct: 175 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKTSQALLSQLYQS 233
Score = 192 (72.6 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 57/178 (32%), Positives = 92/178 (51%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE FR+ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 119
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 120 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 167 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKTSQ 224
Score = 121 (47.7 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 37/122 (30%), Positives = 60/122 (49%)
Query: 249 GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 308
GP++N + + Q A +DD + T + V L +T E R LF G++ K+
Sbjct: 28 GPSSNSRNCPSPMQTG--AATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 83
Query: 309 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 362
K G FV + D AE+A+ LNG +L + I++S+ R PS+ + D N +
Sbjct: 84 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-DANLYV 141
Query: 363 AG 364
+G
Sbjct: 142 SG 143
Score = 98 (39.6 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 281 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 339
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 340 DEAAMAIASLNGYRLGDRVLQVSFKTNK 367
Score = 89 (36.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 199 NGQK-PSG 205
Score = 73 (30.8 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 350 NGYRLGDRVLQVSFKTNKTHK 370
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 220 (82.5 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 62/213 (29%), Positives = 108/213 (50%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GE L++G+L Y + + L+ F G VV V+++ +K T + G+GF+ S A+
Sbjct: 113 GEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKE 172
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEK--------RD------DTPDHTIFVGDLAAD 184
+Q FN + + G + ++N+ G + RD D+P H ++ G+L +
Sbjct: 173 AMQMFNSSQI--GGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSP-HKVYAGNLGWN 229
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
+T L++ F + P GAKV+ +R TGR++G+GF+ F A+ MNGV R
Sbjct: 230 LTSQGLKDAFGDQ-PGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGR 288
Query: 245 PMRIGPATN--KKTVSA-SYQNSQVAQSDDDPN 274
+R+ A+ K TVS S + + ++ + N
Sbjct: 289 ALRLNLASEREKPTVSPPSVEEGETEEASLESN 321
Score = 139 (54.0 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 43/179 (24%), Positives = 79/179 (44%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
++VG+L +T L + F + ++V D++T R++G+GFV G E AM
Sbjct: 118 LYVGNLPYTITSSELSQIF-GEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 236 MNGVFCSTRPMRIG----PATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
N R +++ P + V + D P+ V+ GNL +T +
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHK--VYAGNLGWNLTSQG 234
Query: 292 LRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344
L++ F ++ K+ G+ GF+ F + AL +NG ++ G+ +RL+
Sbjct: 235 LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLN 293
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 190 (71.9 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 50/179 (27%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG +T P+ + A N + SQ+ QS
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
Score = 177 (67.4 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 55/178 (30%), Positives = 90/178 (50%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE ++ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 108 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 306 KIPA------GKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K Q
Sbjct: 155 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 212
Score = 113 (44.8 bits), Expect = 0.00070, P = 0.00070
Identities = 39/134 (29%), Positives = 61/134 (45%)
Query: 237 NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF 296
NG C+ GP T S S V + + + T + V L +T E L+ LF
Sbjct: 7 NGPTCNNTAN--GPTTVNNNCS-----SPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLF 59
Query: 297 SQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350
G++ K+ K G FV + D AE+A+ LNG +L + I++S+ R PS
Sbjct: 60 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PS 118
Query: 351 NKQAQPDPNQWNAG 364
+ + D N + +G
Sbjct: 119 SASIR-DANLYVSG 131
Score = 100 (40.3 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +LA D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 265 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 323
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG R +++ TNK
Sbjct: 324 LNGYRLGDRVLQVSFKTNK 342
Score = 93 (37.8 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 187 NGQKPPGATEPITVKFAN 204
Score = 74 (31.1 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 325 NGYRLGDRVLQVSFKTNKTHK 345
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 192 (72.6 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 50/184 (27%), Positives = 93/184 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ ++ AE+ + T NG +
Sbjct: 78 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQT-- 135
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 136 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 190
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQ--VAQSD 270
G ++G GF+RF E A+ +NG P P T K + S + +Q ++Q
Sbjct: 191 GMSRGVGFIRFDKRIEAEEAIKGLNG---QKPPAATEPITVKFANNPSQKTNQAILSQLY 247
Query: 271 DDPN 274
PN
Sbjct: 248 HSPN 251
Score = 174 (66.3 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 54/178 (30%), Positives = 89/178 (50%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE ++ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 78 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQT-- 135
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 136 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 182
Query: 306 KIPA------GKRCGFVQFADRSCAEEALRMLNGTQ--LGGQNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + + I + + +PS K Q
Sbjct: 183 RILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVKFANNPSQKTNQ 240
Score = 114 (45.2 bits), Expect = 0.00066, P = 0.00066
Identities = 35/125 (28%), Positives = 59/125 (47%)
Query: 249 GPATNKKTVSASYQN---SQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
GP N ++ N S + + + + T + V L +T E L+ LF G++
Sbjct: 37 GPTCNNTAHGSNAINNCSSPIDSGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESC 96
Query: 306 KIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPN 359
K+ K G FV + D AE+A+ LNG +L + I++S+ R PS+ + D N
Sbjct: 97 KLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-DAN 154
Query: 360 QWNAG 364
+ +G
Sbjct: 155 LYVSG 159
Score = 100 (40.3 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +LA D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 307 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 365
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG R +++ TNK
Sbjct: 366 LNGYRLGDRVLQVSFKTNK 384
Score = 94 (38.1 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL 214
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 215 NGQKPPAATEPITVKFAN 232
Score = 74 (31.1 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 187 (70.9 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 49/175 (28%), Positives = 88/175 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 39 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 96
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F +R+ ++V++D+ T
Sbjct: 97 KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTT 151
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVA 267
G ++G F+RF SE A+T NG P P T K + + QN VA
Sbjct: 152 GLSRGVAFIRFDKRSEAEEAITSFNG---HKPPGSSEPITVKFAANPN-QNKNVA 202
Score = 154 (59.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 50/198 (25%), Positives = 97/198 (48%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
A + RDD + V L ++T L+ F + + AK++ D++ G + GYGFV +
Sbjct: 18 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNY 76
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
+ RA+ +NG +R+ KT+ SY ++ D N +++ L
Sbjct: 77 VTAKDAERAINTLNG-------LRL----QSKTIKVSYARPS-SEVIKDAN---LYISGL 121
Query: 284 DSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLG 337
+T + + ++FS++G++++ ++ + G F++F RS AEEA+ NG +
Sbjct: 122 PRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPP 181
Query: 338 GQN--IRLSWGRSPS-NK 352
G + I + + +P+ NK
Sbjct: 182 GSSEPITVKFAANPNQNK 199
Score = 130 (50.8 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 37/117 (31%), Positives = 58/117 (49%)
Query: 254 KKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PA 309
K T+S Y++ DD T + V L +T + LR LFS G++ K+ A
Sbjct: 6 KNTMSNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA 65
Query: 310 GKRCG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG 364
G G FV + AE A+ LNG +L + I++S+ R PS++ + D N + +G
Sbjct: 66 GHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR-PSSEVIK-DANLYISG 120
Score = 94 (38.1 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 116 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 175
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 176 NGHKPPGSSEPITVKFAA 193
Score = 90 (36.7 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 254 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 312
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 313 LNGYRLGDKILQVSFKTNK 331
Score = 76 (31.8 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + S+K
Sbjct: 314 NGYRLGDKILQVSFKTNKSHK 334
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 190 (71.9 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
Identities = 50/179 (27%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG +T P+ + A N + SQ+ QS
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
Score = 177 (67.4 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 55/178 (30%), Positives = 90/178 (50%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE ++ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 108 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 306 KIPA------GKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K Q
Sbjct: 155 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 212
Score = 113 (44.8 bits), Expect = 0.00075, P = 0.00075
Identities = 39/134 (29%), Positives = 61/134 (45%)
Query: 237 NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF 296
NG C+ GP T S S V + + + T + V L +T E L+ LF
Sbjct: 7 NGPTCNNTAN--GPTTINNNCS-----SPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLF 59
Query: 297 SQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350
G++ K+ K G FV + D AE+A+ LNG +L + I++S+ R PS
Sbjct: 60 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PS 118
Query: 351 NKQAQPDPNQWNAG 364
+ + D N + +G
Sbjct: 119 SASIR-DANLYVSG 131
Score = 96 (38.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 30/137 (21%), Positives = 57/137 (41%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDD--------TPDHTIFVGDLAADVTDYMLQETFR 195
NG P + + +A+ +K + +P+ + G LA + L
Sbjct: 187 NGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRR-YPGPLAQQAQRFRLDNLLN 244
Query: 196 ARYPSTKGAKVVIDRLT 212
Y + + + ID +T
Sbjct: 245 MAYGVKRFSPMTIDGMT 261
Score = 74 (31.1 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 190 (71.9 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
Identities = 50/179 (27%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG +T P+ + A N + SQ+ QS
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
Score = 177 (67.4 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 55/178 (30%), Positives = 90/178 (50%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE ++ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 108 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 306 KIPA------GKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K Q
Sbjct: 155 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 212
Score = 96 (38.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 30/137 (21%), Positives = 57/137 (41%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDD--------TPDHTIFVGDLAADVTDYMLQETFR 195
NG P + + +A+ +K + +P+ + G LA + L
Sbjct: 187 NGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRR-YPGPLAQQAQRFRLDNLLN 244
Query: 196 ARYPSTKGAKVVIDRLT 212
Y + + + ID +T
Sbjct: 245 MAYGVKRFSPMTIDGMT 261
Score = 74 (31.1 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 190 (71.9 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
Identities = 50/179 (27%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG +T P+ + A N + SQ+ QS
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
Score = 177 (67.4 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 55/178 (30%), Positives = 90/178 (50%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE ++ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 108 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 306 KIPA------GKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K Q
Sbjct: 155 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 212
Score = 96 (38.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 30/137 (21%), Positives = 57/137 (41%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDD--------TPDHTIFVGDLAADVTDYMLQETFR 195
NG P + + +A+ +K + +P+ + G LA + L
Sbjct: 187 NGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRR-YPGPLAQQAQRFRLDNLLN 244
Query: 196 ARYPSTKGAKVVIDRLT 212
Y + + + ID +T
Sbjct: 245 MAYGVKRFSPMTIDGMT 261
Score = 74 (31.1 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 190 (71.9 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 50/179 (27%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG +T P+ + A N + SQ+ QS
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
Score = 177 (67.4 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 55/178 (30%), Positives = 90/178 (50%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE ++ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 108 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 306 KIPA------GKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K Q
Sbjct: 155 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 212
Score = 113 (44.8 bits), Expect = 0.00075, P = 0.00075
Identities = 39/134 (29%), Positives = 61/134 (45%)
Query: 237 NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF 296
NG C+ GP T S S V + + + T + V L +T E L+ LF
Sbjct: 7 NGPTCNNTAN--GPTTVNNNCS-----SPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLF 59
Query: 297 SQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350
G++ K+ K G FV + D AE+A+ LNG +L + I++S+ R PS
Sbjct: 60 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PS 118
Query: 351 NKQAQPDPNQWNAG 364
+ + D N + +G
Sbjct: 119 SASIR-DANLYVSG 131
Score = 100 (40.3 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +LA D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 279 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 337
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG R +++ TNK
Sbjct: 338 LNGYRLGDRVLQVSFKTNK 356
Score = 93 (37.8 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 187 NGQKPPGATEPITVKFAN 204
Score = 74 (31.1 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
>UNIPROTKB|F1SF34 [details] [associations]
symbol:F1SF34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:CU929885
Ensembl:ENSSSCT00000017014 OMA:SPDIETH Uniprot:F1SF34
Length = 250
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 58/191 (30%), Positives = 97/191 (50%)
Query: 204 AKVVIDRLTGRTKGYGFVRFG-DESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
A+VV D TG++KGYG V F ++ + A+ M G + R ++ AT K S Q
Sbjct: 3 ARVVKDMATGKSKGYGSVSFFYNKLDAENAIVRMGGQWLGGRQIKTSWATRKPPAPKSTQ 62
Query: 263 --NSQVAQSDDDPN-----NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGF 315
N++ + +D N N TV+ G + S +TD+ +R+ FS +GQ++ +++ KR F
Sbjct: 63 ENNTKQLKFEDVVNQSSSKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKRYSF 122
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQAQPDPNQWNAGYYGYAQGYEN 374
V+F+ A A+ + GT + G+ ++ WG+ SP + QW+ YG Q + +
Sbjct: 123 VRFSTHGSAAHAIVSVTGTTIEGRVVKCYWGKESPDMTENYSRWGQWSQ-VYGDPQEHGD 181
Query: 375 YGYAAAAPQDP 385
A Q P
Sbjct: 182 LSPVANGWQVP 192
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 190 (71.9 bits), Expect = 8.3e-17, Sum P(2) = 8.3e-17
Identities = 50/179 (27%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 78 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 135
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 136 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 190
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG +T P+ + A N + SQ+ QS
Sbjct: 191 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 249
Score = 177 (67.4 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 55/178 (30%), Positives = 90/178 (50%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE ++ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 78 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 135
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 136 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 182
Query: 306 KIPA------GKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K Q
Sbjct: 183 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 240
Score = 114 (45.2 bits), Expect = 0.00066, P = 0.00066
Identities = 42/143 (29%), Positives = 67/143 (46%)
Query: 230 LRAM-TEM-NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIV 287
+ AM T++ NG C+ GP T S S V + + + T + V L +
Sbjct: 26 IAAMETQLSNGPTCNNTAN--GPTTINNNCS-----SPVDSGNTEDSKTNLIVNYLPQNM 78
Query: 288 TDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNI 341
T E L+ LF G++ K+ K G FV + D AE+A+ LNG +L + I
Sbjct: 79 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 138
Query: 342 RLSWGRSPSNKQAQPDPNQWNAG 364
++S+ R PS+ + D N + +G
Sbjct: 139 KVSYAR-PSSASIR-DANLYVSG 159
Score = 96 (38.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 30/137 (21%), Positives = 57/137 (41%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 214
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDD--------TPDHTIFVGDLAADVTDYMLQETFR 195
NG P + + +A+ +K + +P+ + G LA + L
Sbjct: 215 NGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRR-YPGPLAQQAQRFRLDNLLN 272
Query: 196 ARYPSTKGAKVVIDRLT 212
Y + + + ID +T
Sbjct: 273 MAYGVKRFSPMTIDGMT 289
Score = 74 (31.1 bits), Expect = 8.3e-17, Sum P(2) = 8.3e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 366 NGYRLGDRVLQVSFKTNKTHK 386
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 190 (71.9 bits), Expect = 8.4e-17, Sum P(2) = 8.4e-17
Identities = 50/179 (27%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 79 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 136
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 137 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 191
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG +T P+ + A N + SQ+ QS
Sbjct: 192 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 250
Score = 177 (67.4 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 55/178 (30%), Positives = 90/178 (50%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE ++ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 79 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 136
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 137 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 183
Query: 306 KIPA------GKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K Q
Sbjct: 184 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 241
Score = 114 (45.2 bits), Expect = 0.00066, P = 0.00066
Identities = 42/143 (29%), Positives = 67/143 (46%)
Query: 230 LRAM-TEM-NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIV 287
+ AM T++ NG C+ GP T S S V + + + T + V L +
Sbjct: 27 IAAMETQLSNGPTCNNTAN--GPTTINNNCS-----SPVDSGNTEDSKTNLIVNYLPQNM 79
Query: 288 TDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNI 341
T E L+ LF G++ K+ K G FV + D AE+A+ LNG +L + I
Sbjct: 80 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 139
Query: 342 RLSWGRSPSNKQAQPDPNQWNAG 364
++S+ R PS+ + D N + +G
Sbjct: 140 KVSYAR-PSSASIR-DANLYVSG 160
Score = 96 (38.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 30/137 (21%), Positives = 57/137 (41%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDD--------TPDHTIFVGDLAADVTDYMLQETFR 195
NG P + + +A+ +K + +P+ + G LA + L
Sbjct: 216 NGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRR-YPGPLAQQAQRFRLDNLLN 273
Query: 196 ARYPSTKGAKVVIDRLT 212
Y + + + ID +T
Sbjct: 274 MAYGVKRFSPMTIDGMT 290
Score = 74 (31.1 bits), Expect = 8.4e-17, Sum P(2) = 8.4e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 184 (69.8 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 41/146 (28%), Positives = 78/146 (53%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F +R+ ++V++D+ T
Sbjct: 89 KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+T NG
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 156 (60.0 bits), Expect = 7.2e-09, P = 7.2e-09
Identities = 50/198 (25%), Positives = 98/198 (49%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
A + RDD + V L ++T L+ F + + AK++ D++ G + GYGFV +
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
+ RA++ +NG +R+ KT+ SY ++ D N +++ L
Sbjct: 69 VTAKDAERAISTLNG-------LRL----QSKTIKVSYARPS-SEVIKDAN---LYISGL 113
Query: 284 DSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLG 337
+T + + ++FS++G++++ ++ + G F++F RS AEEA+ NG +
Sbjct: 114 PRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPP 173
Query: 338 GQN--IRLSWGRSPS-NK 352
G + I + + +P+ NK
Sbjct: 174 GSSEPITVKFAANPNQNK 191
Score = 122 (48.0 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 36/114 (31%), Positives = 56/114 (49%)
Query: 257 VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR 312
+S Y++ DD T + V L +T E LR LFS G++ K+ AG
Sbjct: 1 MSNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 313 CG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG 364
G FV + AE A+ LNG +L + I++S+ R PS++ + D N + +G
Sbjct: 61 LGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYAR-PSSEVIK-DANLYISG 112
Score = 94 (38.1 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 90 (36.7 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 305 LNGYRLGDKILQVSFKTNK 323
Score = 76 (31.8 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + S+K
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 184 (69.8 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 41/146 (28%), Positives = 78/146 (53%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F +R+ ++V++D+ T
Sbjct: 89 KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+T NG
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 156 (60.0 bits), Expect = 7.2e-09, P = 7.2e-09
Identities = 50/198 (25%), Positives = 98/198 (49%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
A + RDD + V L ++T L+ F + + AK++ D++ G + GYGFV +
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
+ RA++ +NG +R+ KT+ SY ++ D N +++ L
Sbjct: 69 VTAKDAERAISTLNG-------LRL----QSKTIKVSYARPS-SEVIKDAN---LYISGL 113
Query: 284 DSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLG 337
+T + + ++FS++G++++ ++ + G F++F RS AEEA+ NG +
Sbjct: 114 PRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPP 173
Query: 338 GQN--IRLSWGRSPS-NK 352
G + I + + +P+ NK
Sbjct: 174 GSSEPITVKFAANPNQNK 191
Score = 122 (48.0 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 36/114 (31%), Positives = 56/114 (49%)
Query: 257 VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR 312
+S Y++ DD T + V L +T E LR LFS G++ K+ AG
Sbjct: 1 MSNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 313 CG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG 364
G FV + AE A+ LNG +L + I++S+ R PS++ + D N + +G
Sbjct: 61 LGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYAR-PSSEVIK-DANLYISG 112
Score = 94 (38.1 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 90 (36.7 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 305 LNGYRLGDKILQVSFKTNK 323
Score = 76 (31.8 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + S+K
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 184 (69.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 41/146 (28%), Positives = 78/146 (53%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 45 MSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTLNGLRLQS-- 102
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A D D +++ L +T ++E F RY ++V++D+ +
Sbjct: 103 KTIKVSYAR----PSSDSIKDANLYISGLPKTMTQKDVEEMF-GRYGRIINSRVLVDQAS 157
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF +E A+ ++NG
Sbjct: 158 GLSRGVAFIRFDKRAEAEDAIKDLNG 183
Score = 161 (61.7 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 46/186 (24%), Positives = 95/186 (51%)
Query: 189 MLQETFRARYPS---TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M Q+ R+ + S + AK++ D++ G + GYGFV + + ++ RA++ +NG
Sbjct: 45 MSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTLNG------- 97
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
+R+ KT+ SY S D + +++ L +T + + E+F +YG++++
Sbjct: 98 LRL----QSKTIKVSYARP----SSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINS 149
Query: 306 KIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSN-KQAQP 356
++ + G F++F R+ AE+A++ LNG + G + + + + SP+ K Q
Sbjct: 150 RVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTVKFAASPNQVKNTQV 209
Query: 357 DPNQWN 362
P ++
Sbjct: 210 IPQVYH 215
Score = 86 (35.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F G ++ +V+ ++ +G G FI F RA AE ++
Sbjct: 122 LYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDL 181
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 182 NGQKPPGAAEQMTVKFAA 199
Score = 86 (35.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 29/117 (24%), Positives = 53/117 (45%)
Query: 145 GTPMPNGEQNFRLNWASFG--AGEKRDDTPDHT-----IFVGDLAADVTDYMLQETFRAR 197
G P+ + Q FR + S +G + P ++ IF+ +L D + +L + F
Sbjct: 222 GGPVHHQAQRFRFSPMSVDHMSGMSGVNVPGNSSSGWCIFIYNLGQDADEGILWQMF-GP 280
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ + KV+ D T + KG+GFV E A+ +NG + +++ T+K
Sbjct: 281 FGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASLNGYRLGDKILQVSFKTSK 337
Score = 77 (32.2 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+F+ NL + L ++F +G + +VK+ +C GFV A A+ L
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ S S+K
Sbjct: 320 NGYRLGDKILQVSFKTSKSHK 340
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 223 (83.6 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 70/284 (24%), Positives = 136/284 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ +
Sbjct: 138 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAI 195
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 196 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQ 253
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D +G++KG+GFV + + +A+ EMNG S + + +G A K
Sbjct: 254 FGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVER 312
Query: 258 SASYQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----G 310
A + Q+ Q +++ NLD + DE LR+ FS +G + K+
Sbjct: 313 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 372
Query: 311 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 373 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 416
Score = 202 (76.2 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 64/225 (28%), Positives = 112/225 (49%)
Query: 136 AERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFR 195
AER L T N + G+ R+ W+ ++ + +F+ +L + + L +TF
Sbjct: 105 AERALDTMNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFS 160
Query: 196 ARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
A + + KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K
Sbjct: 161 A-FGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 217
Query: 256 TVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR 312
A A++ + N V++ N V DE L+ELFSQ+G+ + VK+ P+GK
Sbjct: 218 EREAELG----AKAKEFTN---VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS 270
Query: 313 --CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
GFV + A +A+ +NG ++ G+ I + + +QA+
Sbjct: 271 KGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 315
Score = 157 (60.3 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 52/197 (26%), Positives = 96/197 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 229 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKA 287
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG + +G+ F R E KR + I ++ +L +
Sbjct: 288 VEEMNGKEI-SGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 346
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 347 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 403
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 404 YVALAQRKEERKAHLTN 420
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 222 (83.2 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 70/284 (24%), Positives = 135/284 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A + +
Sbjct: 27 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAANKAI 84
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 85 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELF-SQ 142
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D +G++KG+GFV + + +A+ EMNG S + + +G A K
Sbjct: 143 FGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVER 201
Query: 258 SASYQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----G 310
A + Q+ Q +++ NLD + DE LR+ FS +G + K+
Sbjct: 202 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 261
Query: 311 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 262 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 305
Score = 191 (72.3 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 55/185 (29%), Positives = 97/185 (52%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
+F+ +L + + L +TF A + + KVV D G +KGY FV F + +A+ +
Sbjct: 30 VFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE-NG-SKGYAFVHFETQEAANKAIEK 86
Query: 236 MNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLREL 295
MNG+ + R + +G ++K A A++ + N V++ N V DE+LREL
Sbjct: 87 MNGMLLNDRKVFVGRFKSRKEREAELG----AKAKEFTN---VYIKNFGEEVDDENLREL 139
Query: 296 FSQYGQLVHVKIP---AGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350
FSQ+G+ + VK+ +GK GFV + A +A+ +NG ++ G++I + +
Sbjct: 140 FSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV 199
Query: 351 NKQAQ 355
+QA+
Sbjct: 200 ERQAE 204
Score = 161 (61.7 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 53/197 (26%), Positives = 96/197 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 118 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKA 176
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG M +G+ F R E KR + I ++ +L +
Sbjct: 177 VEEMNGKEM-SGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 235
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 236 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 292
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 293 YVALAQRKEERKAHLTN 309
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 54/188 (28%), Positives = 94/188 (50%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFHEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
A+ MNG + +++ AT + +S V + ++ VFVG+L +T
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT 118
Query: 289 DEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
E ++ F+ +G++ ++ GK GFV F ++ AE A++ + G LGG+ IR
Sbjct: 119 TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 343 LSWG-RSP 349
+W R P
Sbjct: 179 TNWATRKP 186
Score = 187 (70.9 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 55/184 (29%), Positives = 91/184 (49%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DHT-IFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNK 254
AT K
Sbjct: 182 ATRK 185
Score = 119 (46.9 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 325
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAA 60
Query: 326 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 197 (74.4 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 59/178 (33%), Positives = 93/178 (52%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE FR+ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 99 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 156
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 157 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 203
Query: 306 KI-----PAGKR-CGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I G R GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 204 RILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQ 261
Score = 189 (71.6 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 49/179 (27%), Positives = 91/179 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 99 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 156
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 157 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 211
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG S P+ + A N ++ SQ+ QS
Sbjct: 212 GGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQALLSQLYQS 270
Score = 121 (47.7 bits), Expect = 0.00012, P = 0.00012
Identities = 37/122 (30%), Positives = 61/122 (50%)
Query: 249 GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 308
GP++N ++ + Q S+DD + T + V L +T E R LF G++ K+
Sbjct: 65 GPSSNSRSCPSPMQTGG---SNDD-SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 120
Query: 309 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 362
K G FV + D AE+A+ LNG +L + I++S+ R PS+ + D N +
Sbjct: 121 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-DANLYV 178
Query: 363 AG 364
+G
Sbjct: 179 SG 180
Score = 98 (39.6 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 318 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 376
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 377 DEAAMAIASLNGYRLGDRVLQVSFKTNK 404
Score = 89 (36.4 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 176 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGL 235
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 236 NGQK-PSG 242
Score = 73 (30.8 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 387 NGYRLGDRVLQVSFKTNKTHK 407
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 182 (69.1 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 53/191 (27%), Positives = 94/191 (49%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L + L M + + + F GEV + K+IR+K TGQ GYGF+ ++ + AE+ +
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
NG + N + +++ A + ++V L ++T L+ F + Y
Sbjct: 172 NGLRLQN--KTIKVSIAR----PSSESIKGANLYVSGLPKNMTQSDLESLF-SPYGKIIT 224
Query: 204 AKVVIDRLTGR-----TKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRI----GPAT 252
++++ D +TG +KG GF+RF E RA+ E+NG ST P+ + P++
Sbjct: 225 SRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNPSS 284
Query: 253 NKKTVS--ASY 261
NK ++ A+Y
Sbjct: 285 NKNSMQPLAAY 295
Score = 148 (57.2 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 55/222 (24%), Positives = 98/222 (44%)
Query: 150 NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVID 209
N N N A+ + P + V L ++ ++ F + + K++ D
Sbjct: 86 NNTNNNNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLF-VSFGEVESCKLIRD 144
Query: 210 RLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQS 269
++TG++ GYGFV + + + +A+ +NG +R+ KT+ S S
Sbjct: 145 KVTGQSLGYGFVNYVKQEDAEKAINALNG-------LRL----QNKTIKVSIARP----S 189
Query: 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---------PAG--KRCGFVQF 318
+ ++V L +T L LFS YG+++ +I AG K GF++F
Sbjct: 190 SESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRF 249
Query: 319 ADRSCAEEALRMLNGT--QLGGQNIRLSWGRSPS-NKQA-QP 356
R A+ A++ LNGT + + I + + +PS NK + QP
Sbjct: 250 DQRFEADRAIKELNGTTPKNSTEPITVKFANNPSSNKNSMQP 291
Score = 83 (34.3 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 31/113 (27%), Positives = 52/113 (46%)
Query: 247 RIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVK 306
R P T+ + Q + +A S +FV NL + L +LF +G + VK
Sbjct: 337 RYSPLTSDLITNGMIQGNTIASS-----GWCIFVYNLAPDTEENVLWQLFGPFGAVQSVK 391
Query: 307 IPA---GKRC---GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
+ +C GFV + A A++ LNG LG + +++S+ ++ NKQ
Sbjct: 392 VIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQVSF-KTNKNKQ 443
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 220 (82.5 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 70/281 (24%), Positives = 134/281 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ ++
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAIEKM 60
Query: 144 NGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARYPS 200
NG + N + F R E + T +++ + +V D L+E F +++
Sbjct: 61 NGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQFGK 118
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
T KV+ D G++KG+GFV + + +A+ EMNG S + + +G A K A
Sbjct: 119 TLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 177
Query: 261 YQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----GKRC 313
+ Q+ Q +++ NLD + DE LR+ FS +G + K+ K
Sbjct: 178 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGF 237
Query: 314 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 238 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 278
Score = 187 (70.9 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 55/185 (29%), Positives = 95/185 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
+F+ +L + + L +TF A + + KVV D G +KGY FV F + +A+ +
Sbjct: 3 VFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEK 59
Query: 236 MNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLREL 295
MNG+ + R + +G ++K A A++ + N V++ N V DE L+EL
Sbjct: 60 MNGMLLNDRKVFVGRFKSRKEREAELG----AKAKEFTN---VYIKNFGEEVDDESLKEL 112
Query: 296 FSQYGQLVHVKI---PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350
FSQ+G+ + VK+ P GK GFV + A +A+ +NG ++ G+ I + +
Sbjct: 113 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 172
Query: 351 NKQAQ 355
+QA+
Sbjct: 173 ERQAE 177
Score = 155 (59.6 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 49/196 (25%), Positives = 93/196 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ G+ +G+GF+ + A +
Sbjct: 91 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKA 149
Query: 140 LQTFNGTPMPN-----G------EQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTD 187
++ NG + G E+ L ++R +++ +L + D
Sbjct: 150 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 209
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 210 EKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 266
Query: 248 IGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 267 VALAQRKEERKAHLTN 282
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 179 (68.1 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 47/175 (26%), Positives = 87/175 (49%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GE+ + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F + + ++V++D+ T
Sbjct: 89 KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-SPFGRIINSRVLVDQTT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVA 267
G ++G F+RF SE A+T NG P P T K + + QN VA
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAITSFNG---HKPPGSSEPITVKFAANPN-QNKNVA 194
Score = 152 (58.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 50/198 (25%), Positives = 96/198 (48%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
A + RDD + V L ++T L+ F + + AK++ D++ G + GYGFV +
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSS-IGEIESAKLIRDKVAGHSLGYGFVNY 68
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
+ RA+ +NG +R+ KT+ SY ++ D N +++ L
Sbjct: 69 VTAKDAERAINTLNG-------LRL----QSKTIKVSYARPS-SEVIKDAN---LYISGL 113
Query: 284 DSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLG 337
+T + + ++FS +G++++ ++ + G F++F RS AEEA+ NG +
Sbjct: 114 PRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPP 173
Query: 338 GQN--IRLSWGRSPS-NK 352
G + I + + +P+ NK
Sbjct: 174 GSSEPITVKFAANPNQNK 191
Score = 124 (48.7 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 36/114 (31%), Positives = 56/114 (49%)
Query: 257 VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR 312
+S Y++ DD T + V L +T E LR LFS G++ K+ AG
Sbjct: 1 MSNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHS 60
Query: 313 CG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG 364
G FV + AE A+ LNG +L + I++S+ R PS++ + D N + +G
Sbjct: 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR-PSSEVIK-DANLYISG 112
Score = 92 (37.4 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 89 (36.4 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 305 LNGYRLGDKILQVSFKTNK 323
Score = 77 (32.2 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + S+K
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 184 (69.8 bits), Expect = 5.3e-16, Sum P(2) = 5.3e-16
Identities = 48/179 (26%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ ++ AE+ + T NG +
Sbjct: 79 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQT-- 136
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F +++ +++++D++T
Sbjct: 137 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQFGRIITSRILVDQVT 191
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG +T P+ + A N S+ S + QS
Sbjct: 192 GVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQKSSQALLSHLYQS 250
Score = 174 (66.3 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 53/178 (29%), Positives = 91/178 (51%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE ++ + S + K+V D++TG++ GYGFV + + + +A+ +NG+ T
Sbjct: 79 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQT-- 136
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQ+G+++
Sbjct: 137 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQFGRIITS 183
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 184 RILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQKSSQ 241
Score = 98 (39.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 29/135 (21%), Positives = 54/135 (40%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGL 215
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTI------FVGDLAADVTDYMLQETFRAR 197
NG P + + +A+ + + H + G LA + L
Sbjct: 216 NGQKPPGATEPITVKFANNPSQKSSQALLSHLYQSPNRRYPGPLAQQAQRFRLDNLLNMA 275
Query: 198 YPSTKGAKVVIDRLT 212
Y + + + ID +T
Sbjct: 276 YGVKRFSPMTIDGVT 290
Score = 74 (31.1 bits), Expect = 5.3e-16, Sum P(2) = 5.3e-16
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 190 (71.9 bits), Expect = 7.3e-16, Sum P(2) = 7.3e-16
Identities = 50/179 (27%), Positives = 92/179 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 79 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 136
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 137 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 191
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG +T P+ + A N + SQ+ QS
Sbjct: 192 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 250
Score = 177 (67.4 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 55/178 (30%), Positives = 90/178 (50%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M QE ++ + S + K+V D++TG++ GYGFV + D + +A+ +NG+ T
Sbjct: 79 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 136
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L +T + L +LFSQYG+++
Sbjct: 137 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITS 183
Query: 306 KIPA------GKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + G + I + + +PS K Q
Sbjct: 184 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 241
Score = 114 (45.2 bits), Expect = 0.00066, P = 0.00066
Identities = 42/143 (29%), Positives = 67/143 (46%)
Query: 230 LRAM-TEM-NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIV 287
+ AM T++ NG C+ GP T S S V + + + T + V L +
Sbjct: 27 IAAMETQLSNGPTCNNTAN--GPTTINNNCS-----SPVDSGNTEDSKTNLIVNYLPQNM 79
Query: 288 TDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNI 341
T E L+ LF G++ K+ K G FV + D AE+A+ LNG +L + I
Sbjct: 80 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 139
Query: 342 RLSWGRSPSNKQAQPDPNQWNAG 364
++S+ R PS+ + D N + +G
Sbjct: 140 KVSYAR-PSSASIR-DANLYVSG 160
Score = 93 (37.8 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 216 NGQKPPGATEPITVKFAN 233
Score = 92 (37.4 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +LA D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 308 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 366
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG R +++ TNK
Sbjct: 367 LNGYRLGDRVLQVFK-TNK 384
Score = 65 (27.9 bits), Expect = 7.3e-16, Sum P(2) = 7.3e-16
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 332 NGTQLGGQNIRL 343
NG +LG + +++
Sbjct: 368 NGYRLGDRVLQV 379
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 179 (68.1 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 50/185 (27%), Positives = 94/185 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQT-GQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151
M + L + F GE+ + K++R+K T GQ GYGF+ +I AE+ + T NG +
Sbjct: 77 MTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT- 135
Query: 152 EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL 211
+ ++++A + RD ++V L +T L++ F ++Y +++++D++
Sbjct: 136 -KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQV 189
Query: 212 TGRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSASYQNSQVAQS 269
TG ++G GF+RF E A+ +NG +T P+ + A N S ++ ++Q
Sbjct: 190 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNP---SQKVNHTILSQL 246
Query: 270 DDDPN 274
PN
Sbjct: 247 YQSPN 251
Score = 172 (65.6 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 65/223 (29%), Positives = 106/223 (47%)
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
Q NG P N N +N +S +D+ + I V L ++T L+ F +
Sbjct: 33 QLSNG-PTCNNTANCPNTINCSSPVESNNTEDSKTNLI-VNYLPQNMTQEELKSLFGS-I 89
Query: 199 PSTKGAKVVIDRLT-GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ K+V D++T G++ GYGFV + D + +A+ +NG+ T KT+
Sbjct: 90 GEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-----------KTI 138
Query: 258 SASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI------PAGK 311
SY A S D N ++V L +T + L +LFSQYG+++ +I +
Sbjct: 139 KVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 194
Query: 312 RCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNK 352
GF++F R AEEA++ LNG + G + I + + +PS K
Sbjct: 195 GVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 237
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 39/125 (31%), Positives = 61/125 (48%)
Query: 249 GPATNKKTVSASYQN--SQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQ----- 301
GP N + N S V ++ + + T + V L +T E L+ LF G+
Sbjct: 37 GPTCNNTANCPNTINCSSPVESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK 96
Query: 302 LVHVKIPAGKRCG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPN 359
LV KI G+ G FV + D AE+A+ LNG +L + I++S+ R PS+ + D N
Sbjct: 97 LVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-DAN 154
Query: 360 QWNAG 364
+ +G
Sbjct: 155 LYVSG 159
Score = 95 (38.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 32/139 (23%), Positives = 57/139 (41%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDT--------PDHTIFVGDLAADVTDYMLQETFR 195
NG P + + +A+ +K + T P+ + G LA + L
Sbjct: 215 NGQKPPGATEPITVKFAN-NPSQKVNHTILSQLYQSPNRR-YPGPLAQQAQRFRLDNLLN 272
Query: 196 ARYPSTKG--AKVVIDRLT 212
Y K + + ID +T
Sbjct: 273 MAYGGIKSRFSPMAIDGMT 291
Score = 77 (32.2 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ S ++K
Sbjct: 368 NGYRLGDRVLQVSFKTSKTHK 388
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 171 (65.3 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 46/179 (25%), Positives = 86/179 (48%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F + ++V++D+ T
Sbjct: 89 KTIKVSFAR----PSSETIKDANLYISGLPRTMTQKDVEDMFLP-FGHIINSRVLVDQAT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G F+RF SE A+ NG S+ P+ + A N SQ+ S
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPNQSKNMALLSQICHS 202
Score = 143 (55.4 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 45/194 (23%), Positives = 93/194 (47%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
RDD + V L ++T L+ F + + AK++ D++ G + GYGFV + +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNYLNAK 72
Query: 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIV 287
+ RA+ +NG +R+ KT+ S+ +++ D N +++ L +
Sbjct: 73 DAERAINTLNG-------LRL----QSKTIKVSFARPS-SETIKDAN---LYISGLPRTM 117
Query: 288 TDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQN- 340
T + + ++F +G +++ ++ + G F++F RS AEEA+ NG + G +
Sbjct: 118 TQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSE 177
Query: 341 -IRLSWGRSPSNKQ 353
I + + +P+ +
Sbjct: 178 PITVKFAANPNQSK 191
Score = 115 (45.5 bits), Expect = 0.00037, P = 0.00037
Identities = 35/114 (30%), Positives = 57/114 (50%)
Query: 257 VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR 312
+S Y++ DD T + V L +T + LR LFS G++ K+ AG
Sbjct: 1 MSNGYEDHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 313 CG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG 364
G FV + + AE A+ LNG +L + I++S+ R PS++ + D N + +G
Sbjct: 61 LGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFAR-PSSETIK-DANLYISG 112
Score = 90 (36.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 87 (35.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ T+K
Sbjct: 305 LNGYRLGDKTLQVSFKTSK 323
Score = 82 (33.9 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ S S+K
Sbjct: 306 NGYRLGDKTLQVSFKTSKSHK 326
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 213 (80.0 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 58/178 (32%), Positives = 88/178 (49%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
RTL++ +L + + +L T F G V+ K+I G + Y F+EF A LQ
Sbjct: 40 RTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFE---GLNDPYAFVEFSDHNQATLALQ 96
Query: 142 TFNGTPMPNGEQNFRLNWA--SFGAGEKRD--DTPDHT-IFVGDLAADVTDYMLQETFRA 196
+ NG + E+ + WA GE R +T H +FVGDL +++ L+E F
Sbjct: 97 SHNGRELL--EKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAF-V 153
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
++ AK++ D T + KGYGFV + + RA+ EMNG + R +R AT K
Sbjct: 154 KFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRK 211
Score = 162 (62.1 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 57/208 (27%), Positives = 88/208 (42%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
T+FV +L +TD L F + + AK++ + G Y FV F D ++ A+
Sbjct: 41 TLFVANLDPAITDEFLATLFN-QIGAVMKAKIIFE---GLNDPYAFVEFSDHNQATLALQ 96
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
NG + M + A + + + ++ + VFVG+L S + LRE
Sbjct: 97 SHNGRELLEKEMHVTWAFEPREPGENRSKPETSR------HFHVFVGDLCSEIDSTKLRE 150
Query: 295 LFSQYGQLVHVKI------PAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG-R 347
F ++G++ KI GK GFV + R AE A+ +NG LG + IR +W R
Sbjct: 151 AFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATR 210
Query: 348 SPSNK-QAQPDPNQWNAGYYGYAQGYEN 374
P + D G G Y N
Sbjct: 211 KPDEDGERGGDRGDRRGGGGGGRDRYHN 238
Score = 151 (58.2 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 50/187 (26%), Positives = 80/187 (42%)
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
YP + A+ ID + G G +R + + E G R G
Sbjct: 180 YPRREDAERAIDEMNGAWLGRRTIRTNWATRKPDEDGERGGDRGDRRGGGGGGRDRYHNQ 239
Query: 258 SASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQ 317
S + Q+ D NT+V+VGN+ ++ DE +R F ++G + V+ + FV+
Sbjct: 240 SEKTYDEIFNQAAAD--NTSVYVGNIANLGEDE-IRRAFDRFGPINEVRTFKIQGYAFVK 296
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRS-PSNKQAQPDPNQWN-AGYYGYAQGYENY 375
F + A A+ +N +GGQ +R SWG+S S K ++ +G YGY G
Sbjct: 297 FETKESAARAIVQMNNADIGGQIVRCSWGKSGDSGKPSERGSGGGGGSGNYGYGYGNSGG 356
Query: 376 GYAAAAP 382
G + P
Sbjct: 357 GGGSGGP 363
Score = 141 (54.7 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 35/108 (32%), Positives = 58/108 (53%)
Query: 259 ASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKRCGF 315
A + Q+A +DP T+FV NLD +TDE L LF+Q G ++ KI F
Sbjct: 25 AEREGFQLASGSEDPR--TLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDPYAF 82
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWG---RSPSNKQAQPDPNQ 360
V+F+D + A AL+ NG +L + + ++W R P +++P+ ++
Sbjct: 83 VEFSDHNQATLALQSHNGRELLEKEMHVTWAFEPREPGENRSKPETSR 130
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 216 (81.1 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 63/181 (34%), Positives = 88/181 (48%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
T+FV +LA L F P K A VV + TG +GYGFV F + RA
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGP-IKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASY-QNSQVAQSDDDPNNTTVFVGNLD-SIVTDEHL 292
E+ R +R+ AT +K QN V ++ N + + NL SI +HL
Sbjct: 65 ELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHL 124
Query: 293 RELFSQYGQLVHVKIPA---GKRCGF--VQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
FS++G++ +KIP G+ CGF V DR AEEA+ LNGT++ G+ I + W
Sbjct: 125 EPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAV 184
Query: 348 S 348
S
Sbjct: 185 S 185
Score = 116 (45.9 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 52/221 (23%), Positives = 91/221 (41%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEF-----ISRAGAE 137
TL++ +L + + L F+ G + V+ N +TG+ GYGF+ F RA E
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKE 65
Query: 138 --------RVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
R+L+ TP E + N A ++D+ P + + +L +
Sbjct: 66 LKNKKLHGRILRLDFATPRKRSEVDTDQNKA-VKKTIRQDNRP--RLIIRNLPWSIKKPQ 122
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
E +++ + K+ + GR G+ FV D AM +NG RP+ +
Sbjct: 123 HLEPHFSKFGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVD 181
Query: 250 PATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDE 290
A +K A+ A S+++ G+ SIVT++
Sbjct: 182 WAVSKDAFEATTLKD--ASSEEENKEFVSDEGH--SIVTED 218
Score = 65 (27.9 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 23/65 (35%), Positives = 29/65 (44%)
Query: 306 KIPAG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNI---RLSWGRSPSNKQAQPDPNQ 360
K AG K GF+QF A ALR LNG ++ + I + W R K P+P
Sbjct: 532 KAGAGRSKGFGFMQFISHKYALMALRWLNGREITVKKIIDAEIEWAR----KHKIPEPQL 587
Query: 361 WNAGY 365
N Y
Sbjct: 588 PNIDY 592
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 168 (64.2 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 46/184 (25%), Positives = 90/184 (48%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIE--------GYGFIEFISRAGAERVLQTFN 144
M + L + F+ GEV + K+IR+K G GYGF+ +++ + AER + T N
Sbjct: 67 MSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPSDAERAINTLN 126
Query: 145 GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA 204
G + + + ++++A D D +++ L +T +++ F +Y +
Sbjct: 127 GLRLQS--KTIKVSYAR----PSSDGIKDANLYISGLPKTMTQKNVEDMF-TQYGRIINS 179
Query: 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSASYQ 262
++++D+ +G ++G F+RF SE A+ ++NG S + P+ + A N S
Sbjct: 180 RILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITVKFAANPNQSKNSQL 239
Query: 263 NSQV 266
SQ+
Sbjct: 240 LSQL 243
Score = 156 (60.0 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 50/187 (26%), Positives = 96/187 (51%)
Query: 189 MLQETFRARYPS---TKGAKVVIDRLTGRTK--------GYGFVRFGDESEQLRAMTEMN 237
M QE R+ + S + AK++ D++ G + GYGFV + + S+ RA+ +N
Sbjct: 67 MSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPSDAERAINTLN 126
Query: 238 GVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFS 297
G +R+ KT+ SY S D + +++ L +T +++ ++F+
Sbjct: 127 G-------LRL----QSKTIKVSYARP----SSDGIKDANLYISGLPKTMTQKNVEDMFT 171
Query: 298 QYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQN--IRLSWGRSP 349
QYG++++ +I + G F++F RS AEEA++ LNG++ G + I + + +P
Sbjct: 172 QYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITVKFAANP 231
Query: 350 S-NKQAQ 355
+ +K +Q
Sbjct: 232 NQSKNSQ 238
Score = 85 (35.0 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 29/103 (28%), Positives = 50/103 (48%)
Query: 256 TVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KR 312
+V S + VA S + +FV NL + L ++F +G + +VK+ +
Sbjct: 268 SVDHSVSSMNVASSSS--SGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSK 325
Query: 313 C---GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 352
C GFV + A A+ LNG +LG + +++S+ S S+K
Sbjct: 326 CKGFGFVTMTNYEEAAMAISSLNGYRLGDKVLQVSFKSSKSHK 368
Score = 84 (34.6 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L D + +L + F + + KV+ D T + KG+GFV + E A++
Sbjct: 288 IFVYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISS 346
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ ++K
Sbjct: 347 LNGYRLGDKVLQVSFKSSK 365
Score = 80 (33.2 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F G ++ +++ ++ +G G FI F R+ AE ++
Sbjct: 152 LYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDL 211
Query: 144 NGTPMPNG 151
NG+ P+G
Sbjct: 212 NGSK-PSG 218
>UNIPROTKB|Q1RMF9 [details] [associations]
symbol:DAZ1 "DAZ1 protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:NP_004072.3
UniGene:Hs.522868 UniGene:Hs.70936 GeneID:1617 KEGG:hsa:1617
CTD:1617 HGNC:HGNC:2682 PharmGKB:PA27149 HOVERGEN:HBG048860
GenomeRNAi:1617 NextBio:6642 EMBL:AC053490 EMBL:AC010088
EMBL:BC114927 IPI:IPI00942129 SMR:Q1RMF9 STRING:Q1RMF9
Ensembl:ENST00000382510 Uniprot:Q1RMF9
Length = 613
Score = 120 (47.3 bits), Expect = 5.4e-15, Sum P(3) = 5.4e-15
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G + MDET + +CF G V VK+I N+ TG +GYGF+ F++ ++++ +
Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 99
Query: 143 ---FNGTPMPNG 151
F+G + G
Sbjct: 100 QIHFHGKKLKLG 111
Score = 120 (47.3 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G + MDET + +CF G V VK+I N+ TG +GYGF+ F++ ++++ +
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 264
Query: 143 ---FNGTPMPNG 151
F+G + G
Sbjct: 265 QIHFHGKKLKLG 276
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G + MDET + +CF G V VK+I N+ TG +GYGF+ F++ ++++ +
Sbjct: 371 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 429
Query: 143 ---FNGTPMPNG 151
F+G + G
Sbjct: 430 QIHFHGKKLKLG 441
Score = 107 (42.7 bits), Expect = 5.4e-15, Sum P(3) = 5.4e-15
Identities = 26/88 (29%), Positives = 49/88 (55%)
Query: 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233
+T+FVG + A + + + F RY S K K++ +R TG +KGYGFV F ++ + + +
Sbjct: 205 NTVFVGGIDARMDETEIGSCF-GRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 262
Query: 234 TEMNGVFCSTRPMRIGPATNKKTVSASY 261
+ + +++GPA K+ + A +
Sbjct: 263 GSQ--IHFHGKKLKLGPAIRKQKLCARH 288
Score = 107 (42.7 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 26/88 (29%), Positives = 49/88 (55%)
Query: 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233
+T+FVG + A + + + F RY S K K++ +R TG +KGYGFV F ++ + + +
Sbjct: 370 NTVFVGGIDARMDETEIGSCF-GRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 427
Query: 234 TEMNGVFCSTRPMRIGPATNKKTVSASY 261
+ + +++GPA K+ + A +
Sbjct: 428 GSQ--IHFHGKKLKLGPAIRKQKLCARH 453
Score = 107 (42.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 26/88 (29%), Positives = 49/88 (55%)
Query: 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233
+T+FVG + A + + + F RY S K K++ +R TG +KGYGFV F ++ + + +
Sbjct: 40 NTVFVGGIDARMDETEIGSCF-GRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 97
Query: 234 TEMNGVFCSTRPMRIGPATNKKTVSASY 261
+ + +++GPA K+ + A +
Sbjct: 98 GSQ--IHFHGKKLKLGPAIRKQKLCARH 123
Score = 77 (32.2 bits), Expect = 5.4e-15, Sum P(3) = 5.4e-15
Identities = 28/84 (33%), Positives = 38/84 (45%)
Query: 250 PATNKKTVS--ASYQNSQVAQSDDD--PNN----TTVFVGNLDSIVTDEHLRELFSQYGQ 301
P T T+S AS Q+S A S P TVFVG +D+ + + + F +YG
Sbjct: 336 PETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGS 395
Query: 302 LVHVKI-----PAGKRCGFVQFAD 320
+ VKI K GFV F +
Sbjct: 396 VKEVKIITNRTGVSKGYGFVSFVN 419
Score = 77 (32.2 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 28/84 (33%), Positives = 38/84 (45%)
Query: 250 PATNKKTVS--ASYQNSQVAQSDDD--PNN----TTVFVGNLDSIVTDEHLRELFSQYGQ 301
P T T+S AS Q+S A S P TVFVG +D+ + + + F +YG
Sbjct: 171 PETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGS 230
Query: 302 LVHVKI-----PAGKRCGFVQFAD 320
+ VKI K GFV F +
Sbjct: 231 VKEVKIITNRTGVSKGYGFVSFVN 254
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 191 (72.3 bits), Expect = 6.4e-15, P = 6.4e-15
Identities = 49/189 (25%), Positives = 96/189 (50%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
RD +FV ++ D+ D L+E F Y T+ KV+ D +G++KG+GFVR+
Sbjct: 29 RDRATFTNVFVKNIGDDIDDEKLKELF-CEYGPTESVKVIRDA-SGKSKGFGFVRYETHE 86
Query: 228 EQLRAMTEMNGVFCSTRPMRIGPATNK----KTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
+A+ +++G + + +G A K + ++ ++ + P +++ NL
Sbjct: 87 AAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG-VPIYIKNL 145
Query: 284 DSIVTDEHLRELFSQYGQL----VHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQ 339
D + DE L+E FS +G + V +++ GK G V F+ A +A+ +NG +G +
Sbjct: 146 DETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSK 205
Query: 340 NIRLSWGRS 348
+ ++ G++
Sbjct: 206 PLHVTLGQA 214
Score = 132 (51.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 43/169 (25%), Positives = 78/169 (46%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-- 150
+D+ L F G +VKVIR+ +G+ +G+GF+ + + A++ + +G +
Sbjct: 46 IDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKV 104
Query: 151 ---GEQN--------FRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
G R + EK P I++ +L + D L+E F + +
Sbjct: 105 LYVGRAQKKIERLAELRRRFERLRLKEK-SRPPGVPIYIKNLDETINDEKLKEEFSS-FG 162
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
S AKV+++ G+ KG+G V F E +A+ EMNG ++P+ +
Sbjct: 163 SISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 209
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 212 (79.7 bits), Expect = 9.3e-15, P = 9.3e-15
Identities = 71/257 (27%), Positives = 118/257 (45%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F G V +++V R+ T + GY ++ + + A AER L T
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + Q RL W+ ++ T + IFV +L + + L +TF + + +
Sbjct: 77 LNYTNIKG--QPARLMWSHRDPSLRKSGTGN--IFVKNLDKSIDNKALFDTF-SMFGNIL 131
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK---TVSA 259
KV D G++K YGFV + DE A+ ++NGV ++ + +GP K T
Sbjct: 132 SCKVATDEF-GKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDT 190
Query: 260 SYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFA 319
+ N V D T +L + E+ S +V + K C F+ +A
Sbjct: 191 KFTNLYVKNFPDSVTET-----HLRQLFNP--YGEITSM---IVKMDNKNRKFC-FINYA 239
Query: 320 DRSCAEEALRMLNGTQL 336
D A+ A+ LNG ++
Sbjct: 240 DAESAKNAMDNLNGKKI 256
Score = 173 (66.0 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 47/172 (27%), Positives = 85/172 (49%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
+++VGDL DVT+ +L E F +V D +T ++ GY +V + + ++ RA+
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNT-VGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
+N +P R+ S+++ + +S +FV NLD + ++ L +
Sbjct: 76 TLNYTNIKGQPARL---------MWSHRDPSLRKS----GTGNIFVKNLDKSIDNKALFD 122
Query: 295 LFSQYGQLVHVKIPA-----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 341
FS +G ++ K+ K GFV + D A+EA+ +NG QLG +N+
Sbjct: 123 TFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNV 174
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 212 (79.7 bits), Expect = 9.3e-15, P = 9.3e-15
Identities = 71/257 (27%), Positives = 118/257 (45%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F G V +++V R+ T + GY ++ + + A AER L T
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + Q RL W+ ++ T + IFV +L + + L +TF + + +
Sbjct: 77 LNYTNIKG--QPARLMWSHRDPSLRKSGTGN--IFVKNLDKSIDNKALFDTF-SMFGNIL 131
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK---TVSA 259
KV D G++K YGFV + DE A+ ++NGV ++ + +GP K T
Sbjct: 132 SCKVATDEF-GKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDT 190
Query: 260 SYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFA 319
+ N V D T +L + E+ S +V + K C F+ +A
Sbjct: 191 KFTNLYVKNFPDSVTET-----HLRQLFNP--YGEITSM---IVKMDNKNRKFC-FINYA 239
Query: 320 DRSCAEEALRMLNGTQL 336
D A+ A+ LNG ++
Sbjct: 240 DAESAKNAMDNLNGKKI 256
Score = 173 (66.0 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 47/172 (27%), Positives = 85/172 (49%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
+++VGDL DVT+ +L E F +V D +T ++ GY +V + + ++ RA+
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNT-VGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
+N +P R+ S+++ + +S +FV NLD + ++ L +
Sbjct: 76 TLNYTNIKGQPARL---------MWSHRDPSLRKS----GTGNIFVKNLDKSIDNKALFD 122
Query: 295 LFSQYGQLVHVKIPA-----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 341
FS +G ++ K+ K GFV + D A+EA+ +NG QLG +N+
Sbjct: 123 TFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNV 174
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 211 (79.3 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 66/287 (22%), Positives = 139/287 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +++ +L+ +D L F+ G +++ KV K G +GYG++ F + AE+ +
Sbjct: 273 VGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEK--GISKGYGYVHFETNDSAEKAI 330
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
+ NGT + G+ +N F + +R ++ +F + +T +LQ+ R+
Sbjct: 331 EKVNGT-LILGKP---INVERFVSKVERYKV-ENKVFFRNADESITIEILQQELSNRFGE 385
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST----RPMRIGPAT---N 253
+ ++ + G++KG G V F ++ + + +TE + ST + T N
Sbjct: 386 IESC-ILKNDANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSSNGGTIEIN 444
Query: 254 KKTVSASYQNSQVAQSDDDPNNTT---VFVGNLDSIVTDEHLRELFSQYGQLVHVKI--- 307
K ++ S+V + + TT +F+ N+D + + ++E F+++G ++ +KI
Sbjct: 445 GKPITIDRIKSKVERFTEYRKKTTDLSLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQD 504
Query: 308 --PAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 352
K GF+ F++ A++AL LNG G + I++S+ +N+
Sbjct: 505 ENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNKDNNQ 551
Score = 183 (69.5 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 51/171 (29%), Positives = 89/171 (52%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGE--VVAVKVIRNKQTGQIEGYGFIEFISRAGAE 137
++ +L++GDL ++E LN F+ G + ++ V R+ T + GY ++ F + AE
Sbjct: 182 QLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAE 241
Query: 138 RVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
R L T N T + +G+ R+ W S+ KR T IFV +L V + ML +TF +
Sbjct: 242 RALDTLNYT-LVHGKP-CRIMW-SYRDPTKRK-TNVGNIFVKNLEKGVDNAMLYDTFSS- 296
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
+ + KV ++ G +KGYG+V F +A+ ++NG +P+ +
Sbjct: 297 FGNILSCKVEFEK--GISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINV 345
Score = 157 (60.3 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 52/180 (28%), Positives = 85/180 (47%)
Query: 172 PDH---TIFVGDLAADVTDYMLQETF-RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
P H +++VGDLAADV + +L E F + + V D T R+ GY +V F +
Sbjct: 179 PPHQLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNH 238
Query: 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIV 287
+ RA+ +N +P RI SY++ ++ N +FV NL+ V
Sbjct: 239 DAERALDTLNYTLVHGKPCRI---------MWSYRDPTKRKT----NVGNIFVKNLEKGV 285
Query: 288 TDEHLRELFSQYGQLVHVKIP----AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343
+ L + FS +G ++ K+ K G+V F AE+A+ +NGT + G+ I +
Sbjct: 286 DNAMLYDTFSSFGNILSCKVEFEKGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINV 345
Score = 38 (18.4 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 253 NKKTVSAS--YQNSQVAQSDDDPNNTTVFV 280
NK+ + Y N+ + ++++ NNTT V
Sbjct: 690 NKRVPNGKPRYNNNNNSSNNNNNNNTTTNV 719
>UNIPROTKB|Q9NQZ3 [details] [associations]
symbol:DAZ1 "Deleted in azoospermia protein 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0008494 GO:GO:0045948
EMBL:AC006338 EMBL:AF271087 EMBL:AF271088 IPI:IPI00334616
RefSeq:NP_004072.3 UniGene:Hs.522868 UniGene:Hs.70936
ProteinModelPortal:Q9NQZ3 SMR:Q9NQZ3 IntAct:Q9NQZ3 MINT:MINT-254473
STRING:Q9NQZ3 PhosphoSite:Q9NQZ3 DMDM:44887841 PRIDE:Q9NQZ3
Ensembl:ENST00000405239 GeneID:1617 KEGG:hsa:1617 UCSC:uc004fvl.3
CTD:1617 GeneCards:GC0YM025275 HGNC:HGNC:2682 MIM:400003 MIM:415000
neXtProt:NX_Q9NQZ3 Orphanet:1646 PharmGKB:PA27149 eggNOG:KOG0118
HOGENOM:HOG000207950 HOVERGEN:HBG048860 InParanoid:Q9NQZ3
OMA:NYQAYSP GenomeRNAi:1617 NextBio:6642 ArrayExpress:Q9NQZ3
Bgee:Q9NQZ3 CleanEx:HS_DAZ1 Genevestigator:Q9NQZ3
GermOnline:ENSG00000188120 Uniprot:Q9NQZ3
Length = 744
Score = 120 (47.3 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G + MDET + +CF G V VK+I N+ TG +GYGF+ F++ ++++ +
Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 99
Query: 143 ---FNGTPMPNG 151
F+G + G
Sbjct: 100 QIHFHGKKLKLG 111
Score = 120 (47.3 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G + MDET + +CF G V VK+I N+ TG +GYGF+ F++ ++++ +
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 264
Query: 143 ---FNGTPMPNG 151
F+G + G
Sbjct: 265 QIHFHGKKLKLG 276
Score = 120 (47.3 bits), Expect = 0.00036, P = 0.00036
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G + MDET + +CF G V VK+I N+ TG +GYGF+ F++ ++++ +
Sbjct: 371 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 429
Query: 143 ---FNGTPMPNG 151
F+G + G
Sbjct: 430 QIHFHGKKLKLG 441
Score = 107 (42.7 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 26/88 (29%), Positives = 49/88 (55%)
Query: 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233
+T+FVG + A + + + F RY S K K++ +R TG +KGYGFV F ++ + + +
Sbjct: 205 NTVFVGGIDARMDETEIGSCF-GRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 262
Query: 234 TEMNGVFCSTRPMRIGPATNKKTVSASY 261
+ + +++GPA K+ + A +
Sbjct: 263 GSQ--IHFHGKKLKLGPAIRKQKLCARH 288
Score = 107 (42.7 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 26/88 (29%), Positives = 49/88 (55%)
Query: 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233
+T+FVG + A + + + F RY S K K++ +R TG +KGYGFV F ++ + + +
Sbjct: 370 NTVFVGGIDARMDETEIGSCF-GRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 427
Query: 234 TEMNGVFCSTRPMRIGPATNKKTVSASY 261
+ + +++GPA K+ + A +
Sbjct: 428 GSQ--IHFHGKKLKLGPAIRKQKLCARH 453
Score = 107 (42.7 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 26/88 (29%), Positives = 49/88 (55%)
Query: 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233
+T+FVG + A + + + F RY S K K++ +R TG +KGYGFV F ++ + + +
Sbjct: 40 NTVFVGGIDARMDETEIGSCF-GRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 97
Query: 234 TEMNGVFCSTRPMRIGPATNKKTVSASY 261
+ + +++GPA K+ + A +
Sbjct: 98 GSQ--IHFHGKKLKLGPAIRKQKLCARH 123
Score = 77 (32.2 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 28/84 (33%), Positives = 38/84 (45%)
Query: 250 PATNKKTVS--ASYQNSQVAQSDDD--PNN----TTVFVGNLDSIVTDEHLRELFSQYGQ 301
P T T+S AS Q+S A S P TVFVG +D+ + + + F +YG
Sbjct: 336 PETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGS 395
Query: 302 LVHVKI-----PAGKRCGFVQFAD 320
+ VKI K GFV F +
Sbjct: 396 VKEVKIITNRTGVSKGYGFVSFVN 419
Score = 77 (32.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 28/84 (33%), Positives = 38/84 (45%)
Query: 250 PATNKKTVS--ASYQNSQVAQSDDD--PNN----TTVFVGNLDSIVTDEHLRELFSQYGQ 301
P T T+S AS Q+S A S P TVFVG +D+ + + + F +YG
Sbjct: 171 PETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGS 230
Query: 302 LVHVKI-----PAGKRCGFVQFAD 320
+ VKI K GFV F +
Sbjct: 231 VKEVKIITNRTGVSKGYGFVSFVN 254
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 167 (63.8 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 39/146 (26%), Positives = 74/146 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ +++ A + D +++ L +T +++ F + ++V++D+ T
Sbjct: 89 KTIKVSVAR----PSSESIKDANLYISGLPRTMTQKDVEDMFLP-FGRIINSRVLVDQAT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+ NG
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 144 (55.7 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 48/194 (24%), Positives = 94/194 (48%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
RDD + V L ++T L+ F + + AK++ D++ G + GYGFV + +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNYLNAK 72
Query: 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIV 287
+ RA+ +NG +R+ KT+ S ++S D N +++ L +
Sbjct: 73 DAERAINTLNG-------LRL----QSKTIKVSVARPS-SESIKDAN---LYISGLPRTM 117
Query: 288 TDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQN- 340
T + + ++F +G++++ ++ + G F++F RS AEEA+ NG + G +
Sbjct: 118 TQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSE 177
Query: 341 -IRLSWGRSPS-NK 352
I + + +P+ NK
Sbjct: 178 PITVKFAANPNQNK 191
Score = 90 (36.7 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 84 (34.6 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ T+K
Sbjct: 305 LNGYRLGDKTLQVFFKTSK 323
Score = 76 (31.8 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++ + S S+K
Sbjct: 306 NGYRLGDKTLQVFFKTSKSHK 326
>SGD|S000001919 [details] [associations]
symbol:PES4 "Poly(A) binding protein, suppressor of DNA
polymerase epsilon mutation" species:4932 "Saccharomyces
cerevisiae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000001919
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
EMBL:D26442 PIR:S56278 RefSeq:NP_116678.1 ProteinModelPortal:P39684
SMR:P39684 STRING:P39684 EnsemblFungi:YFR023W GeneID:850579
KEGG:sce:YFR023W CYGD:YFR023w OMA:DDCGRSK NextBio:966406
Genevestigator:P39684 GermOnline:YFR023W Uniprot:P39684
Length = 611
Score = 207 (77.9 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 52/169 (30%), Positives = 87/169 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
+F+GDL VT+ L+ F+ +YPS AKV +D +T ++ G+G++ F D+ E +AM E
Sbjct: 93 LFIGDLHETVTEETLKGIFK-KYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEE 151
Query: 236 MNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL---DSIVTDEHL 292
+N + + +RI P+ T ++ T VF NL + ++T
Sbjct: 152 LNYTKVNGKEIRIMPSLRNTTFRKNF-------------GTNVFFSNLPLNNPLLTTRVF 198
Query: 293 RELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 341
+ FS+YG+++ K+ + K GFV F D A ++M N T G+ I
Sbjct: 199 YDTFSRYGKILSCKLDSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKI 247
Score = 94 (38.1 bits), Expect = 0.00068, Sum P(2) = 0.00067
Identities = 47/190 (24%), Positives = 83/190 (43%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+IGDL + E L F V+ KV + T + G+G++ F + AE+ ++
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAAD---VTDYMLQETFRARYPS 200
N T + NG++ R+ S R + + +F +L + +T + +TF +RY
Sbjct: 153 NYTKV-NGKE-IRI-MPSLRNTTFRKNFGTN-VFFSNLPLNNPLLTTRVFYDTF-SRY-- 205
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
K++ +L R K GFV F DE + N + + G +K+ S
Sbjct: 206 ---GKILSCKLDSR-KDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVP 261
Query: 261 YQNSQVAQSD 270
+Q ++ D
Sbjct: 262 NFETQKSRLD 271
Score = 66 (28.3 bits), Expect = 0.00068, Sum P(2) = 0.00067
Identities = 16/83 (19%), Positives = 40/83 (48%)
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC----GFVQF 318
N + +++ + ++F+ NL +I T + + FS+ G + + + + FV +
Sbjct: 290 NDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVGPIKSIYLSNATKVKYLWAFVTY 349
Query: 319 ADRSCAEEALRMLNGTQLGGQNI 341
+ S +E+A++ N G+ +
Sbjct: 350 KNSSDSEKAIKRYNNFYFRGKKL 372
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 183 (69.5 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M Q+ F++ + S + K+V D++TG++ GYGFV + D ++ +A+ +NG+ T
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L ++ + + +LFSQYG+++
Sbjct: 108 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQ-LGG-QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + LG + I + + +PS K Q
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 166 (63.5 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 42/179 (23%), Positives = 89/179 (49%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTRPMRIGPATNKKTVSASYQNSQVAQS 269
G ++G GF+RF E A+ +NG + P+ + A N + +Q+ QS
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTQLYQS 221
Score = 91 (37.1 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L+ + + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 287 IFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 345
Query: 236 MNGVFCSTRPMRIGPATNKK 255
+NG R +++ T+K+
Sbjct: 346 LNGYRLGERVLQVSFKTSKQ 365
Score = 85 (35.0 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
Score = 79 (32.9 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ S +K
Sbjct: 347 NGYRLGERVLQVSFKTSKQHK 367
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 196 (74.1 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 65/243 (26%), Positives = 114/243 (46%)
Query: 123 EGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVG 179
+GYGF+ F ++ AER ++ NG + N + F R E + T +++
Sbjct: 10 KGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 68
Query: 180 DLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239
+ D+ D L++ F P+ KV+ D +G++KG+GFV F + +A+ EMNG
Sbjct: 69 NFGEDMDDERLKDLFG---PALS-VKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGK 123
Query: 240 FCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLREL 295
+ + + +G A KK + + Q D ++V NLD + DE LR+
Sbjct: 124 ELNGKQIYVGRA-QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKE 182
Query: 296 FSQYGQLVHVKI--PAG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351
FS +G + K+ G K GFV F+ A +A+ +NG + + + ++ +
Sbjct: 183 FSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 242
Query: 352 KQA 354
+QA
Sbjct: 243 RQA 245
Score = 158 (60.7 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 54/197 (27%), Positives = 97/197 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 61 EFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 116
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 117 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 175
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 176 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 232
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 233 YVALAQRKEERQAHLTN 249
Score = 139 (54.0 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 48/157 (30%), Positives = 79/157 (50%)
Query: 206 VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQ 265
VV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K A
Sbjct: 2 VVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG--- 56
Query: 266 VAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFAD 320
A++ + N V++ N + DE L++LF G + VK+ +GK GFV F
Sbjct: 57 -ARAKEFTN---VYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFER 109
Query: 321 RSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 110 HEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 144
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 190 (71.9 bits), Expect = 8.4e-13, P = 8.4e-13
Identities = 69/224 (30%), Positives = 115/224 (51%)
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST-- 201
+GT +PNG N A+ DD+ + I V L ++T QE F++ + S
Sbjct: 17 SGTSLPNGPV-ISTNGAT-------DDSKTNLI-VNYLPQNMT----QEEFKSLFGSIGE 63
Query: 202 -KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
+ K+V D++TG++ GYGFV + D ++ +A+ +NG+ T KT+ S
Sbjct: 64 IESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQT-----------KTIKVS 112
Query: 261 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI-----PAG--KRC 313
Y A S D N ++V L ++ + + +LFSQYG+++ +I AG +
Sbjct: 113 YARPSSA-SIRDAN---LYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGV 168
Query: 314 GFVQFADRSCAEEALRMLNGTQ-LGG-QNIRLSWGRSPSNKQAQ 355
GF++F R+ AEEA++ LNG + LG + I + + +PS K Q
Sbjct: 169 GFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 164 (62.8 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 37/147 (25%), Positives = 79/147 (53%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ ++ A++ + T NG +
Sbjct: 49 MTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQT-- 106
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D++T
Sbjct: 107 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKDMEQLF-SQYGRIITSRILVDQVT 161
Query: 213 -GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G GF+RF +E A+ +NG
Sbjct: 162 AGISRGVGFIRFDKRNEAEEAIKGLNG 188
Score = 80 (33.2 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ S +K
Sbjct: 338 NGYRLGDRVLQVSFKTSKQHK 358
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 185 (70.2 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 42/146 (28%), Positives = 79/146 (54%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G GF+RF E A+ +NG
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 169 (64.5 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 59/199 (29%), Positives = 94/199 (47%)
Query: 142 TFNGTPMPNGEQNFRLNWAS-FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N T NG N +S +G D + + V L ++T L+ F +
Sbjct: 10 TCNNTA--NGPTTINNNCSSPVDSGNTEDSKTN--LIVNYLPQNMTQEELKSLFGS-IGE 64
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
+ K+V D++TG++ GYGFV + D + +A+ +NG+ T KT+ S
Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-----------KTIKVS 113
Query: 261 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA------GKRCG 314
Y A S D N ++V L +T + L +LFSQYG+++ +I + G
Sbjct: 114 YARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVG 169
Query: 315 FVQFADRSCAEEALRMLNG 333
F++F R AEEA++ LNG
Sbjct: 170 FIRFDKRIEAEEAIKGLNG 188
Score = 113 (44.8 bits), Expect = 0.00013, P = 0.00013
Identities = 39/134 (29%), Positives = 61/134 (45%)
Query: 237 NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF 296
NG C+ GP T S S V + + + T + V L +T E L+ LF
Sbjct: 7 NGPTCNNTAN--GPTTINNNCS-----SPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLF 59
Query: 297 SQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350
G++ K+ K G FV + D AE+A+ LNG +L + I++S+ R PS
Sbjct: 60 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PS 118
Query: 351 NKQAQPDPNQWNAG 364
+ + D N + +G
Sbjct: 119 SASIR-DANLYVSG 131
>WB|WBGene00011589 [details] [associations]
symbol:T07F10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
GeneTree:ENSGT00510000047100 EMBL:Z77669 PIR:T24666
RefSeq:NP_506222.2 ProteinModelPortal:Q22318 SMR:Q22318
STRING:Q22318 PaxDb:Q22318 EnsemblMetazoa:T07F10.3 GeneID:179765
KEGG:cel:CELE_T07F10.3 UCSC:T07F10.3 CTD:179765 WormBase:T07F10.3
HOGENOM:HOG000018915 InParanoid:Q22318 OMA:CFANDSY NextBio:906768
Uniprot:Q22318
Length = 371
Score = 201 (75.8 bits), Expect = 3.9e-14, P = 3.9e-14
Identities = 56/157 (35%), Positives = 84/157 (53%)
Query: 82 RTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
RTLWIGD+ W +ET L+ F G KV R +++GY FIEFI+ A + L
Sbjct: 68 RTLWIGDVPTDWTEET-LSQVFTECGHA-PYKVKRVYVKDELKGYCFIEFITFDEARQTL 125
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
NG +P G ++ R N F A + + + + V + D+ D L F +Y S
Sbjct: 126 YDLNGNRIP-GFKDIRFNLC-F-ANDSYNPNSEFNLHVSSVPDDMADAELYRIFD-KYQS 181
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237
+GAK+ + G +KG GFVRFG++++Q A+ EM+
Sbjct: 182 CRGAKM-FRFVDGSSKGSGFVRFGNQTDQQMALVEMH 217
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 202 (76.2 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 54/172 (31%), Positives = 88/172 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
K++ D TG +KGY F+ F A+ MNG + RP+ + A K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 165 (63.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 58/196 (29%), Positives = 94/196 (47%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
E + A+ MN + +P+R+ NK SA +N V + +F+GNL
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRV----NK--ASAHNKNLDVGAN--------IFIGNL 107
Query: 284 DSIVTDEHLRELFSQYGQLVHV-KI---P-AGKRCG--FVQFADRSCAEEALRMLNGTQL 336
D + ++ L + FS +G ++ KI P G G F+ FA ++ A+ +NG L
Sbjct: 108 DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167
Query: 337 GGQNIRLSWGRSPSNK 352
+ I +S+ +K
Sbjct: 168 CNRPITVSYAFKKDSK 183
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 202 (76.2 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 54/172 (31%), Positives = 88/172 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
K++ D TG +KGY F+ F A+ MNG + RP+ + A K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 165 (63.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 58/196 (29%), Positives = 94/196 (47%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
E + A+ MN + +P+R+ NK SA +N V + +F+GNL
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRV----NK--ASAHNKNLDVGAN--------IFIGNL 107
Query: 284 DSIVTDEHLRELFSQYGQLVHV-KI---P-AGKRCG--FVQFADRSCAEEALRMLNGTQL 336
D + ++ L + FS +G ++ KI P G G F+ FA ++ A+ +NG L
Sbjct: 108 DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167
Query: 337 GGQNIRLSWGRSPSNK 352
+ I +S+ +K
Sbjct: 168 CNRPITVSYAFKKDSK 183
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 202 (76.2 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 54/172 (31%), Positives = 88/172 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
K++ D TG +KGY F+ F A+ MNG + RP+ + A K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 165 (63.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 58/196 (29%), Positives = 94/196 (47%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
E + A+ MN + +P+R+ NK SA +N V + +F+GNL
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRV----NK--ASAHNKNLDVGAN--------IFIGNL 107
Query: 284 DSIVTDEHLRELFSQYGQLVHV-KI---P-AGKRCG--FVQFADRSCAEEALRMLNGTQL 336
D + ++ L + FS +G ++ KI P G G F+ FA ++ A+ +NG L
Sbjct: 108 DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167
Query: 337 GGQNIRLSWGRSPSNK 352
+ I +S+ +K
Sbjct: 168 CNRPITVSYAFKKDSK 183
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 202 (76.2 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 54/172 (31%), Positives = 88/172 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
K++ D TG +KGY F+ F A+ MNG + RP+ + A K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 165 (63.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 58/196 (29%), Positives = 94/196 (47%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
E + A+ MN + +P+R+ NK SA +N V + +F+GNL
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRV----NK--ASAHNKNLDVGAN--------IFIGNL 107
Query: 284 DSIVTDEHLRELFSQYGQLVHV-KI---P-AGKRCG--FVQFADRSCAEEALRMLNGTQL 336
D + ++ L + FS +G ++ KI P G G F+ FA ++ A+ +NG L
Sbjct: 108 DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167
Query: 337 GGQNIRLSWGRSPSNK 352
+ I +S+ +K
Sbjct: 168 CNRPITVSYAFKKDSK 183
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 202 (76.2 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 54/172 (31%), Positives = 88/172 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
K++ D TG +KGY F+ F A+ MNG + RP+ + A K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 165 (63.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 58/196 (29%), Positives = 94/196 (47%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
E + A+ MN + +P+R+ NK SA +N V + +F+GNL
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRV----NK--ASAHNKNLDVGAN--------IFIGNL 107
Query: 284 DSIVTDEHLRELFSQYGQLVHV-KI---P-AGKRCG--FVQFADRSCAEEALRMLNGTQL 336
D + ++ L + FS +G ++ KI P G G F+ FA ++ A+ +NG L
Sbjct: 108 DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167
Query: 337 GGQNIRLSWGRSPSNK 352
+ I +S+ +K
Sbjct: 168 CNRPITVSYAFKKDSK 183
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 202 (76.2 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 54/172 (31%), Positives = 88/172 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
K++ D TG +KGY F+ F A+ MNG + RP+ + A K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 165 (63.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 58/196 (29%), Positives = 94/196 (47%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
E + A+ MN + +P+R+ NK SA +N V + +F+GNL
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRV----NK--ASAHNKNLDVGAN--------IFIGNL 107
Query: 284 DSIVTDEHLRELFSQYGQLVHV-KI---P-AGKRCG--FVQFADRSCAEEALRMLNGTQL 336
D + ++ L + FS +G ++ KI P G G F+ FA ++ A+ +NG L
Sbjct: 108 DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167
Query: 337 GGQNIRLSWGRSPSNK 352
+ I +S+ +K
Sbjct: 168 CNRPITVSYAFKKDSK 183
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 202 (76.2 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 54/172 (31%), Positives = 88/172 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
K++ D TG +KGY F+ F A+ MNG + RP+ + A K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 165 (63.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 58/196 (29%), Positives = 94/196 (47%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
E + A+ MN + +P+R+ NK SA +N V + +F+GNL
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRV----NK--ASAHNKNLDVGAN--------IFIGNL 107
Query: 284 DSIVTDEHLRELFSQYGQLVHV-KI---P-AGKRCG--FVQFADRSCAEEALRMLNGTQL 336
D + ++ L + FS +G ++ KI P G G F+ FA ++ A+ +NG L
Sbjct: 108 DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167
Query: 337 GGQNIRLSWGRSPSNK 352
+ I +S+ +K
Sbjct: 168 CNRPITVSYAFKKDSK 183
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 139 (54.0 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 37/158 (23%), Positives = 79/158 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G + M+E ++ F G ++ + +I++K+T +G FI F ++ A+ L T
Sbjct: 19 TVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNT 78
Query: 143 FN--GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
N GT + N + ++ ++ + + + +F+G L D ++ F Y
Sbjct: 79 TNESGTFLENMNKPLQVKYS-----DNEIEKMERKLFIGMLGTSDED-QIRILF-GNYGI 131
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
+ +V ++ G+ KGYGF+++ E A+ E++G
Sbjct: 132 IEDLNIVREK-DGKPKGYGFIKYSTRDESENALREIDG 168
Score = 115 (45.5 bits), Expect = 0.00047, P = 0.00047
Identities = 41/175 (23%), Positives = 79/175 (45%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
T+FVG + + + + + + F ++ + ++ D+ T +KG F+ F + E A+
Sbjct: 19 TVFVGHIPSSMNEEGVSQIFN-KFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALN 77
Query: 235 EMN--GVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHL 292
N G F K + Y ++++ + + +F+G L + D+ +
Sbjct: 78 TTNESGTFLENM---------NKPLQVKYSDNEIEKME-----RKLFIGMLGTSDEDQ-I 122
Query: 293 RELFSQYG-----QLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ-LGGQNI 341
R LF YG +V K K GF++++ R +E ALR ++G L G N+
Sbjct: 123 RILFGNYGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDGKHTLPGSNL 177
Score = 108 (43.1 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 34/133 (25%), Positives = 62/133 (46%)
Query: 223 FGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASY-QNSQVAQSDDDPNNTT-VFV 280
+G S+ +AM NG + + + + Y Q Q Q PN + +F+
Sbjct: 233 YGQNSQMSQAMGN-NGYRGYQQQPNVNFGMMQGNQAFDYNQQQQQQQQQQQPNESNDLFI 291
Query: 281 GNLDSIVTDEHLRELFSQYGQLVHVKIPAGK-----RC-GFVQFADRSCAEEALRMLNGT 334
L DE L++LF+ YG ++ K+ K +C GFV + + A A++ LNG
Sbjct: 292 YYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQELNGR 351
Query: 335 QLGGQNIRLSWGR 347
+ G+ +++++ R
Sbjct: 352 AIEGKKLKVNFKR 364
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 183 (69.5 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M Q+ F++ + S + K+V D++TG++ GYGFV + D ++ +A+ +NG+ T
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L ++ + + +LFSQYG+++
Sbjct: 108 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQ-LGG-QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + LG + I + + +PS K Q
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 163 (62.4 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 36/146 (24%), Positives = 77/146 (52%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G GF+RF E A+ +NG
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 93 (37.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 25/93 (26%), Positives = 44/93 (47%)
Query: 163 GAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVR 222
G G R IFV +L+ + + +L + F + + KV+ D T + KG+GFV
Sbjct: 273 GVGPVRGCGGGWCIFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVT 331
Query: 223 FGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
+ E A+ +NG R +++ T+K+
Sbjct: 332 MTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQ 364
Score = 85 (35.0 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
Score = 79 (32.9 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ S +K
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 183 (69.5 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M Q+ F++ + S + K+V D++TG++ GYGFV + D ++ +A+ +NG+ T
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L ++ + + +LFSQYG+++
Sbjct: 108 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQ-LGG-QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + LG + I + + +PS K Q
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 163 (62.4 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 36/146 (24%), Positives = 77/146 (52%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G GF+RF E A+ +NG
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 91 (37.1 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L+ + + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 286 IFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 236 MNGVFCSTRPMRIGPATNKK 255
+NG R +++ T+K+
Sbjct: 345 LNGYRLGERVLQVSFKTSKQ 364
Score = 85 (35.0 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
Score = 79 (32.9 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ S +K
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 183 (69.5 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M Q+ F++ + S + K+V D++TG++ GYGFV + D ++ +A+ +NG+ T
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L ++ + + +LFSQYG+++
Sbjct: 108 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 306 KI------PAGKRCGFVQFADRSCAEEALRMLNGTQ-LGG-QNIRLSWGRSPSNKQAQ 355
+I + GF++F R AEEA++ LNG + LG + I + + +PS K Q
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 163 (62.4 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 36/146 (24%), Positives = 77/146 (52%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G GF+RF E A+ +NG
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 91 (37.1 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L+ + + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 286 IFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 236 MNGVFCSTRPMRIGPATNKK 255
+NG R +++ T+K+
Sbjct: 345 LNGYRLGERVLQVSFKTSKQ 364
Score = 85 (35.0 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
Score = 79 (32.9 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ S +K
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 187 (70.9 bits), Expect = 7.4e-14, P = 7.4e-14
Identities = 51/174 (29%), Positives = 82/174 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+ G+L Y +D L V+V+ N+ TGQ G+ F+ + ++
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPD--HTIFVGDLAADVTDYMLQETFRARYPST 201
+GT + ++N+A K P+ H +FVG+L+ VT L FR
Sbjct: 147 DGTEYLG--RALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFR-ECGDV 203
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
GA+VV D TGR++GYGFV + ++E A+ ++G R +R+ A KK
Sbjct: 204 VGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
Score = 110 (43.8 bits), Expect = 0.00084, P = 0.00084
Identities = 41/175 (23%), Positives = 83/175 (47%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
++ G+L +V L + + + + + +V+ +R TG+++G+ FV + + +
Sbjct: 87 LYFGNLPYNVDSATLAQIIQD-FANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 236 MNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLREL 295
++G R +++ A K N + + + +FVGNL VT E L
Sbjct: 146 LDGTEYLGRALKVNFADKPKP------NKEPLYPETEHK---LFVGNLSWTVTSESLAGA 196
Query: 296 FSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344
F + G +V ++ G+ GFV ++ ++ E AL L+G +L G+ IR++
Sbjct: 197 FRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVN 251
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 202 (76.2 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 67/212 (31%), Positives = 102/212 (48%)
Query: 166 EKRDDTPDH-TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFG 224
E +D D TIFV LAA + L F P K A++V DR++GR+KG G+V F
Sbjct: 165 ELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGP-VKEAQIVKDRVSGRSKGVGYVEFK 223
Query: 225 DESEQLRAMTEMNGVFCSTRPMRIGPATN-KKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
DES A+ ++ G P+ I T +K A + P + ++VGN+
Sbjct: 224 DESSVAPAI-QLTGQKLLGIPI-IAQLTEAEKNRQARNSEASSGNKHSAPFHR-LYVGNI 280
Query: 284 DSIVTDEHLRELFSQYGQLVHVKIP---AGKR--CGFVQFADRSCAEEALRMLNGTQLGG 338
+ + L+ +F +G+L V++ G+ GFVQF D + A EAL +NG LGG
Sbjct: 281 HFSIDENDLQSVFEPFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMNGYDLGG 340
Query: 339 QNIRLSWGR---SPSNKQAQPDPNQWNAGYYG 367
+ IR+ G +P N Q + + + G
Sbjct: 341 RAIRVGLGNDKFTPENTQRTQSQSANQSNFQG 372
Score = 177 (67.4 bits), Expect = 8.3e-11, P = 8.3e-11
Identities = 54/212 (25%), Positives = 101/212 (47%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
RT+++ L + L F G V ++++++ +G+ +G G++EF + +Q
Sbjct: 174 RTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDESSVAPAIQ 233
Query: 142 TFN----GTP----MPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQET 193
G P + E+N + + +G K P H ++VG++ + + LQ
Sbjct: 234 LTGQKLLGIPIIAQLTEAEKNRQARNSEASSGNKHS-APFHRLYVGNIHFSIDENDLQSV 292
Query: 194 FRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253
F + + ++ D TGR++GYGFV+F D ++ A+ +MNG R +R+G +
Sbjct: 293 FEP-FGELEFVQLQKDE-TGRSRGYGFVQFRDPNQAREALEKMNGYDLGGRAIRVGLGND 350
Query: 254 KKTVSASYQNSQVAQSDDDPNNTTVFVGNLDS 285
K T +N+Q QS N + F G++ S
Sbjct: 351 KFTP----ENTQRTQSQSA--NQSNFQGSMFS 376
Score = 117 (46.2 bits), Expect = 0.00052, P = 0.00052
Identities = 62/269 (23%), Positives = 115/269 (42%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++G++ + +DE L + F GE+ V+ ++ +TG+ GYGF++F A L+
Sbjct: 275 LYVGNIHFSIDENDLQSVFEPFGELEFVQ-LQKDETGRSRGYGFVQFRDPNQAREALEKM 333
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK- 202
NG + G + R+ G G + TP++T +A+ +++ + +
Sbjct: 334 NGYDL--GGRAIRV-----GLGNDKF-TPENTQRTQSQSANQSNFQGSMFSGSGGRGVQA 385
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV-SASY 261
G DR GR G + + + N F MR T++ SA
Sbjct: 386 GGTSNFDRAGGREPEKGTAASALDDTDVAGVNFNN--FSRDALMRKLARTDEPAEPSADD 443
Query: 262 QNSQVAQSDDDPNNTTVFVGNL-----DSIVTD--EHLR-ELFSQYGQLVHVKI-PAGKR 312
+ ++ +P V V +S V + + +R E +YG +VH+ + P +
Sbjct: 444 KQQKILLPKTEPKPLPVNVNMASREEGESWVKELEDDVRAECEEKYGHVVHIALDPNSQG 503
Query: 313 CGFVQFADRSCAEEALRMLNGTQLGGQNI 341
+++F E A++ LNG GG+ I
Sbjct: 504 DIYLKFDRVQGGENAIKGLNGRFFGGRQI 532
>UNIPROTKB|Q8IUH3 [details] [associations]
symbol:RBM45 "RNA-binding protein 45" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0007399 "nervous system development"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AB036991 GO:GO:0005634
GO:GO:0005737 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AF526533 EMBL:BC066549
IPI:IPI00216750 IPI:IPI00552178 IPI:IPI00789303 RefSeq:NP_694453.2
UniGene:Hs.377257 ProteinModelPortal:Q8IUH3 SMR:Q8IUH3
IntAct:Q8IUH3 STRING:Q8IUH3 PhosphoSite:Q8IUH3 DMDM:59797947
PaxDb:Q8IUH3 PRIDE:Q8IUH3 DNASU:129831 Ensembl:ENST00000286070
GeneID:129831 KEGG:hsa:129831 UCSC:uc002ulv.3 CTD:129831
GeneCards:GC02P178977 HGNC:HGNC:24468 HPA:HPA020448 MIM:608888
neXtProt:NX_Q8IUH3 PharmGKB:PA162400809 eggNOG:NOG145324
HOGENOM:HOG000231828 HOVERGEN:HBG051404 InParanoid:Q8IUH3
OMA:DIWVVKD ChiTaRS:RBM45 GenomeRNAi:129831 NextBio:82648
Bgee:Q8IUH3 CleanEx:HS_RBM45 Genevestigator:Q8IUH3
GermOnline:ENSG00000155636 Uniprot:Q8IUH3
Length = 476
Score = 141 (54.7 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 53/199 (26%), Positives = 97/199 (48%)
Query: 95 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM-PNGEQ 153
E+ L F+ G++ + V+R+K T + +G F++F + A R ++ +G + PN +
Sbjct: 38 ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTK 97
Query: 154 NFRLNWA-SFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR 210
++ A S +G RD + + T IFV + T+ L+E F+ Y + ++ ++
Sbjct: 98 PIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKV-YGDIEYCSIIKNK 155
Query: 211 LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS---YQNSQVA 267
+TG +KG G+VR+ S+ +A+ + F R + P NK + S+ Y N +
Sbjct: 156 VTGESKGLGYVRYLKPSQAAQAIENCDRSF---RAILAEPK-NKASESSEQDYYSNMRQE 211
Query: 268 QSDDDPN-NTTVFVGNLDS 285
+P N FVG S
Sbjct: 212 ALGHEPRVNMFPFVGEQQS 230
Score = 131 (51.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 50/168 (29%), Positives = 81/168 (48%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P+ IF+ ++ + +L+E F + + + VV D+ T +KG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTPESVLRERF-SPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNK--KTVSASYQNSQVAQSDDDPNNTTVFVGNLDSI 286
RAM EM+G C +GP K K A ++S + +D T +FV +
Sbjct: 79 ACRAMEEMHGQ-C------LGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-MIPKS 130
Query: 287 VTDEHLRELFSQYGQLVHVKI----PAG--KRCGFVQFADRSCAEEAL 328
T+E LRE F YG + + I G K G+V++ S A +A+
Sbjct: 131 YTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 107 (42.7 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 292 LRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP-- 349
L ++F ++G L+ V + +GK G+ ++ADR A +A+ L+G L G +++ SP
Sbjct: 408 LEDIFCRFGNLIEVYLVSGKNVGYAKYADRISANDAIATLHGKILNGVRLKVMLADSPRE 467
Query: 350 -SNKQ 353
SNK+
Sbjct: 468 ESNKR 472
Score = 53 (23.7 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 295 LFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
++++Y +L + P G R G D S A + LR + + Q + W +PS +Q
Sbjct: 300 IYAKY-KLHGFQYPPGNRIGVSFIDDGSNATDLLRKMATQMVAAQLASMVWN-NPSQQQ 356
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 123 (48.4 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 34/106 (32%), Positives = 56/106 (52%)
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASY 261
KG VV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K A
Sbjct: 73 KGKPVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 130
Query: 262 QNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 307
A++ + N V++ N + DE L++LF ++G + VK+
Sbjct: 131 G----ARAKEFTN---VYIKNFGEDMDDERLKDLFGKFGPALSVKV 169
Score = 108 (43.1 bits), Expect = 0.00036, P = 0.00036
Identities = 39/142 (27%), Positives = 63/142 (44%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 4 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 62
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDP------NNTTVFVGNLDS 285
A+ MN +P+ +K ++ + A+ + N+ VFVG S
Sbjct: 63 ALDTMNFDVIKGKPVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 122
Query: 286 IVTDEHLRELFSQYGQLVHVKI 307
E EL ++ + +V I
Sbjct: 123 --RKEREAELGARAKEFTNVYI 142
Score = 97 (39.2 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 7 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 66
Query: 143 FN 144
N
Sbjct: 67 MN 68
Score = 62 (26.9 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 311 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 357
K GFV F + AE A+ +NG L + + + GR S K+ + +
Sbjct: 85 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--GRFKSRKEREAE 129
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 183 (69.5 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 55/178 (30%), Positives = 94/178 (52%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M Q+ F++ + S + K+V D++TG++ GYGFV + D ++ +A+ +NG+ T
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L ++ + + +LFSQYG+++
Sbjct: 108 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 306 KI----PAG--KRCGFVQFADRSCAEEALRMLNGTQ-LGG-QNIRLSWGRSPSNKQAQ 355
+I G + GF++F R AEEA++ LNG + LG + I + + +PS K Q
Sbjct: 155 RILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 160 (61.4 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 36/146 (24%), Positives = 76/146 (52%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D+ T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILLDQAT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G GF+RF E A+ +NG
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 91 (37.1 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L+ + + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 286 IFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 236 MNGVFCSTRPMRIGPATNKK 255
+NG R +++ T+K+
Sbjct: 345 LNGYRLGERVLQVSFKTSKQ 364
Score = 87 (35.7 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
Score = 79 (32.9 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ S +K
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 183 (69.5 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 55/178 (30%), Positives = 94/178 (52%)
Query: 189 MLQETFRARYPST---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M Q+ F++ + S + K+V D++TG++ GYGFV + D ++ +A+ +NG+ T
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 246 MRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
KT+ SY A S D N ++V L ++ + + +LFSQYG+++
Sbjct: 108 ---------KTIKVSYARPSSA-SIRDAN---LYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 306 KI----PAG--KRCGFVQFADRSCAEEALRMLNGTQ-LGG-QNIRLSWGRSPSNKQAQ 355
+I G + GF++F R AEEA++ LNG + LG + I + + +PS K Q
Sbjct: 155 RILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 160 (61.4 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 36/146 (24%), Positives = 76/146 (52%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D+ T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILLDQAT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G GF+RF E A+ +NG
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 91 (37.1 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L+ + + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 286 IFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 236 MNGVFCSTRPMRIGPATNKK 255
+NG R +++ T+K+
Sbjct: 345 LNGYRLGERVLQVSFKTSKQ 364
Score = 87 (35.7 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
Score = 79 (32.9 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ S +K
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
>UNIPROTKB|F1RZE1 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 OMA:DIWVVKD GeneTree:ENSGT00680000100059
EMBL:CU856244 Ensembl:ENSSSCT00000017417 Uniprot:F1RZE1
Length = 476
Score = 139 (54.0 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 53/199 (26%), Positives = 96/199 (48%)
Query: 95 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM-PNGEQ 153
E+ L F+ GE+ + V+R+K T + +G F++F + A R ++ +G + PN +
Sbjct: 38 ESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLSPNDTK 97
Query: 154 NFRLNWA-SFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR 210
++ A S +G RD + + T IFV + T+ L+E F+ Y + ++ ++
Sbjct: 98 PIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKV-YGDIEYCSIIKNK 155
Query: 211 LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS---YQNSQVA 267
+TG +KG G+VR+ S+ +A+ + F R + P NK + S+ Y N +
Sbjct: 156 VTGESKGLGYVRYLKPSQAAQAIENCDRSF---RAILAEPK-NKVSESSEQDYYSNMRQE 211
Query: 268 QSDDDPN-NTTVFVGNLDS 285
+P N F G S
Sbjct: 212 TVGHEPRINMFSFAGEQQS 230
Score = 130 (50.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 49/169 (28%), Positives = 85/169 (50%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P+ IF+ ++ + +L+E F + + + VV D+ T +KG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTPESVLRERF-SPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 229 QLRAMTEMNGVFCS---TRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDS 285
RAM EM+G S T+P+++ A ++ S S+++ + D T +FV +
Sbjct: 79 ACRAMEEMHGQCLSPNDTKPIKVFIAQSRS--SGSHRDVE------DEELTRIFV-MIPK 129
Query: 286 IVTDEHLRELFSQYGQLVHVKI----PAG--KRCGFVQFADRSCAEEAL 328
T+E LRE F YG + + I G K G+V++ S A +A+
Sbjct: 130 SYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 107 (42.7 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 292 LRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP-- 349
L ++F ++G L+ V + +GK G+ ++ADR A +A+ L+G L G +++ SP
Sbjct: 408 LEDIFCRFGNLIEVYLVSGKNVGYAKYADRISANDAITTLHGKILNGVRLKVMLADSPRE 467
Query: 350 -SNKQ 353
SNK+
Sbjct: 468 ESNKR 472
Score = 53 (23.7 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 295 LFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
++++Y +L + P G R G D S A + LR + + Q + W +PS +Q
Sbjct: 300 IYAKY-KLHGFQYPPGNRIGVSFIDDGSNATDLLRKMATQMVAAQLASMVWN-NPSQQQ 356
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 197 (74.4 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 53/171 (30%), Positives = 87/171 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 75 NMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQT 129
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
K++ D TG +KGY F+ F A+ MNG + RP+ + A K
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 162 (62.1 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 65/233 (27%), Positives = 105/233 (45%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D ++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDAAVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283
E + A+ MN + +P+R+ NK SA +N V + +F+GNL
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRV----NK--ASAHNKNLDVGAN--------IFIGNL 107
Query: 284 DSIVTDEHLRELFSQYGQLVHV-KI---P-AGKRCG--FVQFADRSCAEEALRMLNGTQL 336
D + ++ L + FS +G ++ KI P G G F+ FA ++ A+ +NG L
Sbjct: 108 DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167
Query: 337 GGQNIRLSWGRSPSNKQAQPDP--NQWNAGYYGYAQGYENYGYAAAAPQDPSM 387
+ I +S+ +K + + A +Q + A AP PSM
Sbjct: 168 CNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSM 220
>RGD|628862 [details] [associations]
symbol:Rbm45 "RNA binding motif protein 45" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm"
evidence=IEA;ISO;ISS] [GO:0007399 "nervous system development"
evidence=IEP] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:628862 GO:GO:0005634 GO:GO:0005737 GO:GO:0007399
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828 HOVERGEN:HBG051404
OrthoDB:EOG43R3MJ EMBL:AB036990 IPI:IPI00190978 RefSeq:NP_695218.1
UniGene:Rn.204106 ProteinModelPortal:Q8CFD1 STRING:Q8CFD1
PhosphoSite:Q8CFD1 PRIDE:Q8CFD1 GeneID:266631 KEGG:rno:266631
UCSC:RGD:628862 InParanoid:Q8CFD1 NextBio:624456
Genevestigator:Q8CFD1 GermOnline:ENSRNOG00000010595 Uniprot:Q8CFD1
Length = 476
Score = 136 (52.9 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 53/202 (26%), Positives = 97/202 (48%)
Query: 92 WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM-PN 150
+ E+ L F+ G++ + V+R+K T + +G F++F + A R ++ +G + PN
Sbjct: 35 YTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPN 94
Query: 151 GEQNFRLNWA-SFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVV 207
+ ++ A S +G RD + + T IFV + T+ L+E F+ Y + V+
Sbjct: 95 DTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKV-YGDIEYCSVI 152
Query: 208 IDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK--KTVSASYQNS- 264
+++TG +KG G+VR+ S+ +A+ + F R + P NK ++ Y +S
Sbjct: 153 KNKVTGESKGLGYVRYLKPSQAAQAIENCDRSF---RALLAEPK-NKVLESPEQDYYSSV 208
Query: 265 -QVAQSDDDPNNTTVFVGNLDS 285
Q + N FVG S
Sbjct: 209 RQETLGHEPRGNLFPFVGEQQS 230
Score = 131 (51.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 49/168 (29%), Positives = 82/168 (48%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P+ IF+ ++ ++ +L+E F + + + VV D+ T +KG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTSESVLREHF-SPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNK--KTVSASYQNSQVAQSDDDPNNTTVFVGNLDSI 286
RAM EM+G C +GP K K A ++S + +D T +FV +
Sbjct: 79 ACRAMEEMHGQ-C------LGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-MIPKS 130
Query: 287 VTDEHLRELFSQYGQLVHVKI----PAG--KRCGFVQFADRSCAEEAL 328
T+E LRE F YG + + + G K G+V++ S A +A+
Sbjct: 131 YTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 109 (43.4 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 292 LRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349
L ++F ++G L+ V + +GK G+V++ADR A +A+ L+G L G +++ SP
Sbjct: 408 LEDIFCRFGNLIEVYLVSGKNVGYVKYADRMSANDAITTLHGKILNGVRLKVMLADSP 465
>UNIPROTKB|Q8CFD1 [details] [associations]
symbol:Rbm45 "RNA-binding protein 45" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:628862 GO:GO:0005634 GO:GO:0005737 GO:GO:0007399
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828 HOVERGEN:HBG051404
OrthoDB:EOG43R3MJ EMBL:AB036990 IPI:IPI00190978 RefSeq:NP_695218.1
UniGene:Rn.204106 ProteinModelPortal:Q8CFD1 STRING:Q8CFD1
PhosphoSite:Q8CFD1 PRIDE:Q8CFD1 GeneID:266631 KEGG:rno:266631
UCSC:RGD:628862 InParanoid:Q8CFD1 NextBio:624456
Genevestigator:Q8CFD1 GermOnline:ENSRNOG00000010595 Uniprot:Q8CFD1
Length = 476
Score = 136 (52.9 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 53/202 (26%), Positives = 97/202 (48%)
Query: 92 WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM-PN 150
+ E+ L F+ G++ + V+R+K T + +G F++F + A R ++ +G + PN
Sbjct: 35 YTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPN 94
Query: 151 GEQNFRLNWA-SFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVV 207
+ ++ A S +G RD + + T IFV + T+ L+E F+ Y + V+
Sbjct: 95 DTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKV-YGDIEYCSVI 152
Query: 208 IDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK--KTVSASYQNS- 264
+++TG +KG G+VR+ S+ +A+ + F R + P NK ++ Y +S
Sbjct: 153 KNKVTGESKGLGYVRYLKPSQAAQAIENCDRSF---RALLAEPK-NKVLESPEQDYYSSV 208
Query: 265 -QVAQSDDDPNNTTVFVGNLDS 285
Q + N FVG S
Sbjct: 209 RQETLGHEPRGNLFPFVGEQQS 230
Score = 131 (51.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 49/168 (29%), Positives = 82/168 (48%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P+ IF+ ++ ++ +L+E F + + + VV D+ T +KG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTSESVLREHF-SPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNK--KTVSASYQNSQVAQSDDDPNNTTVFVGNLDSI 286
RAM EM+G C +GP K K A ++S + +D T +FV +
Sbjct: 79 ACRAMEEMHGQ-C------LGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-MIPKS 130
Query: 287 VTDEHLRELFSQYGQLVHVKI----PAG--KRCGFVQFADRSCAEEAL 328
T+E LRE F YG + + + G K G+V++ S A +A+
Sbjct: 131 YTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 109 (43.4 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 292 LRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349
L ++F ++G L+ V + +GK G+V++ADR A +A+ L+G L G +++ SP
Sbjct: 408 LEDIFCRFGNLIEVYLVSGKNVGYVKYADRMSANDAITTLHGKILNGVRLKVMLADSP 465
>ZFIN|ZDB-GENE-040809-2 [details] [associations]
symbol:rbm42 "RNA binding motif protein 42"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0002088 "lens development in camera-type eye" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040809-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0002088
HSSP:Q60900 CTD:79171 eggNOG:NOG306795 HOGENOM:HOG000154080
HOVERGEN:HBG060478 EMBL:AY648798 EMBL:BC095046 IPI:IPI00499960
RefSeq:NP_001003850.1 UniGene:Dr.77446 ProteinModelPortal:Q6DRG1
Ensembl:ENSDART00000058380 GeneID:445360 KEGG:dre:445360
GeneTree:ENSGT00390000002894 InParanoid:Q504F4 OrthoDB:EOG4J9N0T
NextBio:20832076 Bgee:Q6DRG1 Uniprot:Q6DRG1
Length = 402
Score = 196 (74.1 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 40/79 (50%), Positives = 54/79 (68%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
+T D IF GDL +V D +L F +RYPS AKVV D+ TG+TKGYGFV F D ++
Sbjct: 299 ETDDFRIFCGDLGNEVNDDILARAF-SRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDY 357
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 358 VRAMREMNGRYVGSRPIKL 376
>ZFIN|ZDB-GENE-070122-4 [details] [associations]
symbol:rbm45 "RNA binding motif protein 45"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070122-4 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:129831 eggNOG:NOG145324
HOGENOM:HOG000231828 HOVERGEN:HBG051404 OMA:DIWVVKD
GeneTree:ENSGT00680000100059 OrthoDB:EOG43R3MJ EMBL:BX004991
IPI:IPI00804253 RefSeq:NP_001120874.1 UniGene:Dr.80122
Ensembl:ENSDART00000093415 GeneID:568524 KEGG:dre:568524
NextBio:20889217 Uniprot:B0S522
Length = 467
Score = 148 (57.2 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 47/170 (27%), Positives = 82/170 (48%)
Query: 95 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154
E + FA GE+ + V+++KQT + +G FI+F + A ++ +G + G +
Sbjct: 29 EDTIRESFASFGEIQDIWVVKDKQTKESKGVAFIKFAKSSQACTAMEEMHGRCLAEGTKP 88
Query: 155 FRLNWA-SFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL 211
++ A S +G RD D IFV + T+ L+ETF+ Y + A ++ ++
Sbjct: 89 IKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKTFTEDDLKETFKV-YGDIEYAIIIRNKT 146
Query: 212 TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASY 261
TG +KG G+VRF S+ +A+ + F R + P T + Y
Sbjct: 147 TGDSKGLGYVRFHKPSQAAKAVENCDKTF---RAIIAEPRTKNSSADNDY 193
Score = 127 (49.8 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 46/174 (26%), Positives = 87/174 (50%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P+ +F+ + +T+ ++E+F A + + VV D+ T +KG F++F S+
Sbjct: 12 DEPPNSRLFLVT-SKSITEDTIRESF-ASFGEIQDIWVVKDKQTKESKGVAFIKFAKSSQ 69
Query: 229 QLRAMTEMNGVFCS--TRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSI 286
AM EM+G + T+P+++ A ++ S S+++ + D T +FV +
Sbjct: 70 ACTAMEEMHGRCLAEGTKPIKVFIAQSRS--SGSHRDVE------DEELTRIFV-MIPKT 120
Query: 287 VTDEHLRELFSQYGQLVHVKI----PAG--KRCGFVQFADRSCAEEALRMLNGT 334
T++ L+E F YG + + I G K G+V+F S A +A+ + T
Sbjct: 121 FTEDDLKETFKVYGDIEYAIIIRNKTTGDSKGLGYVRFHKPSQAAKAVENCDKT 174
Score = 94 (38.1 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 16/63 (25%), Positives = 36/63 (57%)
Query: 290 EHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349
E L ++F ++G L+ V + G+ G++++ADR A +A+ ++G + G +++ P
Sbjct: 397 EVLEDVFCRFGSLIEVYLVPGRNVGYIKYADRRSAHDAIDTMHGKVVNGVKMKVMLADPP 456
Query: 350 SNK 352
+
Sbjct: 457 KEE 459
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 161 (61.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 52/175 (29%), Positives = 83/175 (47%)
Query: 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
+RD T +FV L + D L+ F ++Y +KV+ID G + GYGFVRF
Sbjct: 105 ERDQT---NVFVKHLPYEFNDEDLENLF-SKYGKVLSSKVMIDP-KGNSYGYGFVRFSSP 159
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSI 286
E A+ E++G NKK + N + P+N +F+ L
Sbjct: 160 QESAAAIEELDGY----------QYQNKKLL-CRLSNLYTNLNSKYPSNN-LFIKPLPYD 207
Query: 287 VTDEHLRELFSQYGQLVHVKIPA-----GKRCGFVQFADRSCAEEALRMLNGTQL 336
VTD+ LR+LF +G+++ K+ K GFV+F+ A +A+ +NG ++
Sbjct: 208 VTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRI 262
Score = 153 (58.9 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 45/156 (28%), Positives = 77/156 (49%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ L Y ++ L F+ G+V++ KV+ + + G GYGF+ F S + ++
Sbjct: 111 VFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPK-GNSYGYGFVRFSSPQESAAAIEEL 169
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
+G N + RL+ K P + +F+ L DVTD L++ F +
Sbjct: 170 DGYQYQNKKLLCRLSNLYTNLNSKY---PSNNLFIKPLPYDVTDDQLRKLFEP-FGKIIE 225
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239
KV++D G++K GFVRF E + +A+ MNGV
Sbjct: 226 CKVMLDH-NGQSKFAGFVRFSSELDASKAIDAMNGV 260
Score = 127 (49.8 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 31/112 (27%), Positives = 57/112 (50%)
Query: 163 GAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVR 222
G G+ +DT +FV L V D L + F +++ + +V+ D+ TG KGYGFV+
Sbjct: 761 GGGKHTNDT---NLFVFHLPPFVDDSYLFQLF-SQFGKLQSVRVITDKDTGENKGYGFVK 816
Query: 223 FGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPN 274
F E L+ EMNG ++ +++ K+++++ + Q + + N
Sbjct: 817 FYQTDEALKCQKEMNGFRIGSKFLKVKLKNEKESMNSGKSHHQHQNQNKNQN 868
Score = 96 (38.9 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAG--KRCGFVQFADRSCAEEA 327
N+T +FV +L V D +L +LFSQ+G+L V++ G K GFV+F A +
Sbjct: 767 NDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKC 826
Query: 328 LRMLNGTQLGGQNIRL 343
+ +NG ++G + +++
Sbjct: 827 QKEMNGFRIGSKFLKV 842
Score = 73 (30.8 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L Y + + L F G+++ KV+ + GQ + GF+ F S A + +
Sbjct: 199 LFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLD-HNGQSKFAGFVRFSSELDASKAIDAM 257
Query: 144 NGTPMPNGEQNFRL 157
NG + N + + L
Sbjct: 258 NGVRI-NKDSGYPL 270
>FB|FBgn0037342 [details] [associations]
symbol:CG2931 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
HSSP:P09651 eggNOG:NOG306795 GeneTree:ENSGT00390000002894
EMBL:AY071420 RefSeq:NP_649552.1 UniGene:Dm.1071 SMR:Q9VND7
IntAct:Q9VND7 MINT:MINT-754250 EnsemblMetazoa:FBtr0078753
GeneID:40673 KEGG:dme:Dmel_CG2931 UCSC:CG2931-RA
FlyBase:FBgn0037342 InParanoid:Q9VND7 OMA:RAMKEMD OrthoDB:EOG4DJHC6
GenomeRNAi:40673 NextBio:819972 Uniprot:Q9VND7
Length = 302
Score = 190 (71.9 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 47/129 (36%), Positives = 72/129 (55%)
Query: 129 EFISRAGAERVLQTFNGTPMPNGEQN-FRLN----WASFGAGEKRDDTPDHTIFVGDLAA 183
E I A A LQ+F T ++ R+ W + DD D IF GDL
Sbjct: 150 EAIKAARASSALQSFQTTERKKKDRKTVRIAGGTVWEDTSLADWPDD--DFRIFCGDLGN 207
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
DV D +L TF ++PS + A+VV D+ TG++KG+GFV F + ++ +RAM EM+G + +
Sbjct: 208 DVNDEVLTRTFN-KFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIRAMKEMDGRYVGS 266
Query: 244 RPMRIGPAT 252
RP+++ +T
Sbjct: 267 RPIKLRKST 275
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 175 (66.7 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 40/123 (32%), Positives = 65/123 (52%)
Query: 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAAD 184
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+ +
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPE 68
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
+T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G + R
Sbjct: 69 ITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 127
Query: 245 PMR 247
+R
Sbjct: 128 QIR 130
Score = 124 (48.7 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 39/131 (29%), Positives = 64/131 (48%)
Query: 218 YGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTT 277
Y FV F + + A+ MNG R + +G K V ++ + +Q D N+
Sbjct: 11 YCFVEFYEHRDAAAALAAMNG-----RKI-LG-----KEVKVNWATTPSSQKKDTSNHFH 59
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRML 331
VFVG+L +T E ++ F+ +G++ ++ GK GFV F ++ AE A+ +
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 332 NGTQLGGQNIR 342
G LGG+ IR
Sbjct: 120 GGQWLGGRQIR 130
>UNIPROTKB|K7EQ03 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000592202 Uniprot:K7EQ03
Length = 426
Score = 194 (73.4 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 323 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 381
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 382 VRAMREMNGKYVGSRPIKL 400
>UNIPROTKB|F1PYP3 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:DIWVVKD
GeneTree:ENSGT00680000100059 EMBL:AAEX03017810
Ensembl:ENSCAFT00000021639 Uniprot:F1PYP3
Length = 480
Score = 135 (52.6 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 41/150 (27%), Positives = 79/150 (52%)
Query: 95 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM-PNGEQ 153
E+ L F+ GE+ + V+R+K T + +G F++F + A R ++ +G + PN +
Sbjct: 38 ESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLSPNDTK 97
Query: 154 NFRLNWA-SFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR 210
++ A S +G RD + + T IFV + T+ L+E F+ Y + ++ ++
Sbjct: 98 PIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKV-YGDIEYCSIIKNK 155
Query: 211 LTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
+TG +KG G+VR+ S+ +A+ + F
Sbjct: 156 VTGESKGLGYVRYLKPSQAAQAIENCDRSF 185
Score = 130 (50.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 49/169 (28%), Positives = 85/169 (50%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P+ IF+ ++ + +L+E F + + + VV D+ T +KG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTPESVLRERF-SPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 229 QLRAMTEMNGVFCS---TRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDS 285
RAM EM+G S T+P+++ A ++ S S+++ + D T +FV +
Sbjct: 79 ACRAMEEMHGQCLSPNDTKPIKVFIAQSRS--SGSHRDVE------DEELTRIFV-MIPK 129
Query: 286 IVTDEHLRELFSQYGQLVHVKI----PAG--KRCGFVQFADRSCAEEAL 328
T+E LRE F YG + + I G K G+V++ S A +A+
Sbjct: 130 SYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 107 (42.7 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 292 LRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP-- 349
L ++F ++G L+ V + +GK G+ ++ADR A +A+ L+G L G +++ SP
Sbjct: 412 LEDIFCRFGNLIEVYLVSGKNVGYAKYADRISANDAITTLHGKILNGVRLKVMLADSPRE 471
Query: 350 -SNKQ 353
SNK+
Sbjct: 472 ESNKR 476
Score = 50 (22.7 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 295 LFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
++++Y +L + P G R G D + A + LR + + Q + W +PS +Q
Sbjct: 304 IYAKY-KLHGFQYPPGNRIGVSFIDDGNNATDLLRKMATQMVAAQLASMVWN-NPSQQQ 360
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 188 (71.2 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 54/176 (30%), Positives = 91/176 (51%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++G+L Y +D L F G V +VI N+ T Q G+GF+ + AE+ ++ F
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTP---DHT--IFVGDLAADVTDYMLQETFRARY 198
N + NG + +N A+ G + + P D I+VG+L DV L+ F + +
Sbjct: 175 NSFEV-NGRR-LTVNRAA-PRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF-SEH 230
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A+VV DR TGR++G+GFV+ +E+E A+ ++G R +++ A +
Sbjct: 231 GKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEER 286
Score = 132 (51.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 45/182 (24%), Positives = 86/182 (47%)
Query: 170 DTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
+ P+ +FVG+L DV L F + + + ++V+ +R T +++G+GFV E
Sbjct: 108 EPPEEAKLFVGNLPYDVDSQALAMLFE-QAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
+A+ + N + R + + N+ S Q D ++VGNL V
Sbjct: 167 AEKAVEKFNSFEVNGRRLTV----NRAAPRGSRPERQPRVYDAA---FRIYVGNLPWDVD 219
Query: 289 DEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIR 342
L LFS++G++V ++ + + G FVQ ++ + A+ L+G L G+ I+
Sbjct: 220 SGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIK 279
Query: 343 LS 344
++
Sbjct: 280 VN 281
>UNIPROTKB|F1N7X9 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00717903
UniGene:Bt.62303 GeneTree:ENSGT00390000002894 OMA:FIPHVLQ
EMBL:DAAA02046949 Ensembl:ENSBTAT00000017884 Uniprot:F1N7X9
Length = 448
Score = 194 (73.4 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 345 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 403
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 404 VRAMREMNGKYVGSRPIKL 422
>UNIPROTKB|Q0P5L0 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:BC119904 IPI:IPI00717903 RefSeq:NP_001069673.1
UniGene:Bt.62303 ProteinModelPortal:Q0P5L0 STRING:Q0P5L0
GeneID:540172 KEGG:bta:540172 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 NextBio:20878465
Uniprot:Q0P5L0
Length = 448
Score = 194 (73.4 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 345 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 403
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 404 VRAMREMNGKYVGSRPIKL 422
>UNIPROTKB|K7EP90 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000589871 Uniprot:K7EP90
Length = 458
Score = 194 (73.4 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 355 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 413
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 414 VRAMREMNGKYVGSRPIKL 432
>POMBASE|SPAC22E12.02 [details] [associations]
symbol:SPAC22E12.02 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007126 "meiosis"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC22E12.02 GO:GO:0005634
GO:GO:0007126 EMBL:CU329670 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:NOG306795 PIR:T38159 RefSeq:NP_594828.1
ProteinModelPortal:Q10355 EnsemblFungi:SPAC22E12.02.1
GeneID:2541753 KEGG:spo:SPAC22E12.02 OrthoDB:EOG469V4H
NextBio:20802844 Uniprot:Q10355
Length = 219
Score = 174 (66.3 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 48/150 (32%), Positives = 75/150 (50%)
Query: 172 PDH-TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230
P+H +FVG+L DV D L + F + YPS KVV DR G+T+G+GFV F D + L
Sbjct: 27 PNHFRLFVGNLGNDVNDESLYQAF-SEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFL 84
Query: 231 RAMTEMNGVFCSTRPMRIGPAT--------NKKTVSASYQNSQVAQSDDDPNNTTVFVGN 282
+A E NG + +RP+++ AT N+KT+ + +NS +++ N + N
Sbjct: 85 KAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSKIRNSLYSRTIHHGNRVQKKIKN 144
Query: 283 LDSIVTDEHLRELFSQYGQLVHVKIPAGKR 312
+ + R S +L+ G R
Sbjct: 145 KHGKNSSKSSRAAQSAAAELISSSSITGAR 174
Score = 124 (48.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 37/96 (38%), Positives = 52/96 (54%)
Query: 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---GKR--CGFVQFADRSCAEE 326
DPN+ +FVGNL + V DE L + FS+Y LV K+ GK GFV F D +
Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLK 85
Query: 327 ALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 362
A R NG +G + ++LS R+ S+ + PN+ N
Sbjct: 86 AWREKNGKYIGSRPVKLS--RATSDVK----PNEVN 115
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 190 (71.9 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 54/175 (30%), Positives = 90/175 (51%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++G+L Y ++ L F G V +VI N++T Q G+GF+ S AE ++ F
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 144 NGTPMPNGEQNFRLNWAS-FGAGEKRDDT---PDHTIFVGDLAADVTDYMLQETFRARYP 199
N + NG +N A+ G+ +R P ++VG+L DV + L++ F + +
Sbjct: 212 NRYDL-NGRL-LTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-SEHG 268
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A+VV DR TGR++G+GFV D E A++ ++G R +R+ A +
Sbjct: 269 KVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
Score = 149 (57.5 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 56/194 (28%), Positives = 95/194 (48%)
Query: 161 SFGAGEKRDDTPDHT----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTK 216
S GA +R + P+ + +FVG+LA DV L F + + + A+V+ +R T +++
Sbjct: 133 SEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFE-QAGTVEIAEVIYNRETDQSR 191
Query: 217 GYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNT 276
G+GFV E A+ + N + R + + NK S + A +P
Sbjct: 192 GFGFVTMSSVDEAETAVEKFNRYDLNGRLLTV----NKAAPRGS--RPERAPRVYEPA-F 244
Query: 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRM 330
V+VGNL V + L +LFS++G++V ++ G+ GFV +D EA+
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 331 LNGTQLGGQNIRLS 344
L+G L G+ IR++
Sbjct: 305 LDGQNLEGRAIRVN 318
>MGI|MGI:1915285 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1915285 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
GeneTree:ENSGT00390000002894 OrthoDB:EOG4J9N0T OMA:FIPHVLQ
EMBL:AK151000 EMBL:BC009148 EMBL:BC011286 EMBL:BC027372
EMBL:BC057928 IPI:IPI00126204 IPI:IPI00853826 RefSeq:NP_598454.2
UniGene:Mm.401747 ProteinModelPortal:Q91V81 SMR:Q91V81
STRING:Q91V81 PhosphoSite:Q91V81 PaxDb:Q91V81 PRIDE:Q91V81
Ensembl:ENSMUST00000042726 GeneID:68035 KEGG:mmu:68035
UCSC:uc009gfn.2 UCSC:uc009gfp.1 InParanoid:Q91V81 NextBio:326262
Bgee:Q91V81 CleanEx:MM_RBM42 Genevestigator:Q91V81 Uniprot:Q91V81
Length = 474
Score = 194 (73.4 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 429
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448
>RGD|1306184 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 194 (73.4 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 429
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448
>UNIPROTKB|Q6AXT7 [details] [associations]
symbol:Rbm42 "RNA-binding protein 42" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 194 (73.4 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 429
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448
>UNIPROTKB|F1RM56 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002894 OMA:FIPHVLQ EMBL:FP243365
RefSeq:XP_003127114.1 UniGene:Ssc.7915 Ensembl:ENSSSCT00000003210
GeneID:100520432 KEGG:ssc:100520432 Uniprot:F1RM56
Length = 477
Score = 194 (73.4 bits), Expect = 6.0e-13, P = 6.0e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 374 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 432
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 433 VRAMREMNGKYVGSRPIKL 451
>UNIPROTKB|Q9BTD8 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC002115 HSSP:Q15427 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 OrthoDB:EOG4J9N0T
EMBL:BC002868 EMBL:BC004204 EMBL:BC031682 IPI:IPI00021626
IPI:IPI00074329 IPI:IPI00550442 IPI:IPI00929470 RefSeq:NP_077297.2
UniGene:Hs.5086 ProteinModelPortal:Q9BTD8 SMR:Q9BTD8 IntAct:Q9BTD8
MINT:MINT-2876248 STRING:Q9BTD8 PhosphoSite:Q9BTD8 DMDM:74761247
PaxDb:Q9BTD8 PRIDE:Q9BTD8 DNASU:79171 Ensembl:ENST00000262633
Ensembl:ENST00000360475 GeneID:79171 KEGG:hsa:79171 UCSC:uc002oan.3
UCSC:uc002oap.3 UCSC:uc002oaq.3 GeneCards:GC19P036119
HGNC:HGNC:28117 HPA:HPA043671 MIM:613232 neXtProt:NX_Q9BTD8
PharmGKB:PA162400760 InParanoid:Q9BTD8 OMA:FIPHVLQ PhylomeDB:Q9BTD8
ChiTaRS:RBM42 GenomeRNAi:79171 NextBio:68133 Bgee:Q9BTD8
CleanEx:HS_RBM42 Genevestigator:Q9BTD8 Uniprot:Q9BTD8
Length = 480
Score = 194 (73.4 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 377 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 435
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 436 VRAMREMNGKYVGSRPIKL 454
>GENEDB_PFALCIPARUM|PFF1425w [details] [associations]
symbol:PFF1425w "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966276.1
ProteinModelPortal:C6KTC9 EnsemblProtists:PFF1425w:mRNA
GeneID:3885734 KEGG:pfa:PFF1425w EuPathDB:PlasmoDB:PF3D7_0629400
ProtClustDB:CLSZ2515346 Uniprot:C6KTC9
Length = 780
Score = 197 (74.4 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 61/222 (27%), Positives = 102/222 (45%)
Query: 82 RTLWIGDLQYW----MDETYLNTC--FAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAG 135
+TLW+GDL+ +DE Y+ C + +++ +K+ + K + Q Y FIEF +
Sbjct: 23 KTLWVGDLEKIKDEVVDENYILYCMFYEFAEDIIRIKLCKEK-SNQKNSYAFIEFSTYEV 81
Query: 136 AERVLQTFNGTPMPNGEQNFRLNWASFG------AGEKR-----DDTPDHTIFVGDLAAD 184
A+ + NG +P F+LNWA + EK DD ++I+VG L +
Sbjct: 82 AKYCFEKLNGKWIPGKAHRFKLNWAKYNMSDNITTNEKDLNIEIDDKGTYSIYVGSLPIN 141
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VF--C 241
T ++ F Y S K++ + K Y F+ F + E LRA+TEMNG +F C
Sbjct: 142 TTKEEIENLFCNIYNSICFVKMIKNTQKSPHKIYCFIHFFNYDECLRALTEMNGYIFKGC 201
Query: 242 STRPMRI-GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGN 282
+ + G N ++ + N+ + + NN + N
Sbjct: 202 KIKVSKSNGIKMNPSNINNNNNNNVNHNINHNVNNNNIVNNN 243
>UNIPROTKB|C6KTC9 [details] [associations]
symbol:PFF1425w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966276.1
ProteinModelPortal:C6KTC9 EnsemblProtists:PFF1425w:mRNA
GeneID:3885734 KEGG:pfa:PFF1425w EuPathDB:PlasmoDB:PF3D7_0629400
ProtClustDB:CLSZ2515346 Uniprot:C6KTC9
Length = 780
Score = 197 (74.4 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 61/222 (27%), Positives = 102/222 (45%)
Query: 82 RTLWIGDLQYW----MDETYLNTC--FAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAG 135
+TLW+GDL+ +DE Y+ C + +++ +K+ + K + Q Y FIEF +
Sbjct: 23 KTLWVGDLEKIKDEVVDENYILYCMFYEFAEDIIRIKLCKEK-SNQKNSYAFIEFSTYEV 81
Query: 136 AERVLQTFNGTPMPNGEQNFRLNWASFG------AGEKR-----DDTPDHTIFVGDLAAD 184
A+ + NG +P F+LNWA + EK DD ++I+VG L +
Sbjct: 82 AKYCFEKLNGKWIPGKAHRFKLNWAKYNMSDNITTNEKDLNIEIDDKGTYSIYVGSLPIN 141
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VF--C 241
T ++ F Y S K++ + K Y F+ F + E LRA+TEMNG +F C
Sbjct: 142 TTKEEIENLFCNIYNSICFVKMIKNTQKSPHKIYCFIHFFNYDECLRALTEMNGYIFKGC 201
Query: 242 STRPMRI-GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGN 282
+ + G N ++ + N+ + + NN + N
Sbjct: 202 KIKVSKSNGIKMNPSNINNNNNNNVNHNINHNVNNNNIVNNN 243
>UNIPROTKB|F1PT81 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101661 EMBL:AAEX03001010 EMBL:AAEX03001009
Ensembl:ENSCAFT00000011116 Uniprot:F1PT81
Length = 483
Score = 194 (73.4 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 381 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 439
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 440 VRAMREMNGKYVGSRPIKL 458
>MGI|MGI:2387367 [details] [associations]
symbol:Rbm45 "RNA binding motif protein 45" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2387367 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD EMBL:AB036992 EMBL:AY152391
EMBL:AK089975 EMBL:BC057890 IPI:IPI00221908 RefSeq:NP_700454.1
UniGene:Mm.33310 ProteinModelPortal:Q8BHN5 SMR:Q8BHN5 STRING:Q8BHN5
PhosphoSite:Q8BHN5 PaxDb:Q8BHN5 PRIDE:Q8BHN5
Ensembl:ENSMUST00000046389 GeneID:241490 KEGG:mmu:241490
GeneTree:ENSGT00680000100059 InParanoid:Q8BHN5 OrthoDB:EOG43R3MJ
NextBio:385019 Bgee:Q8BHN5 CleanEx:MM_RBM45 Genevestigator:Q8BHN5
GermOnline:ENSMUSG00000042369 Uniprot:Q8BHN5
Length = 476
Score = 139 (54.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 50/168 (29%), Positives = 83/168 (49%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P+ IF+ ++ ++ +L+E F + + + VV D+ T +KG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKHTSELVLRERF-SPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQ 78
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNK--KTVSASYQNSQVAQSDDDPNNTTVFVGNLDSI 286
RAM EM+G C +GP+ K K A ++S + +D T +FV +
Sbjct: 79 ACRAMEEMHGQ-C------LGPSDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-MIPKS 130
Query: 287 VTDEHLRELFSQYGQLVHVKI----PAG--KRCGFVQFADRSCAEEAL 328
T+E LRE F YG + + I G K G+V++ S A +A+
Sbjct: 131 YTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 128 (50.1 bits), Expect = 7.2e-13, Sum P(2) = 7.2e-13
Identities = 51/199 (25%), Positives = 95/199 (47%)
Query: 95 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM-PNGEQ 153
E L F+ G++ + V+R+K T + +G F++F + A R ++ +G + P+ +
Sbjct: 38 ELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCLGPSDTK 97
Query: 154 NFRLNWA-SFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR 210
++ A S +G RD + + T IFV + T+ L+E F+ Y + ++ ++
Sbjct: 98 PIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKV-YGDIEYCSIIKNK 155
Query: 211 LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS---YQNSQVA 267
+TG +KG G+VR+ S+ +A+ + F R + P NK + S Y + +
Sbjct: 156 VTGESKGLGYVRYLKPSQAAQAIENCDRSF---RALLAEPK-NKVSGSPEQDDYSSGRQE 211
Query: 268 QSDDDPN-NTTVFVGNLDS 285
+P N FVG S
Sbjct: 212 ALGQEPRANLFPFVGEQQS 230
Score = 113 (44.8 bits), Expect = 7.2e-13, Sum P(2) = 7.2e-13
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 292 LRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349
L ++F ++G L+ V + +GK G+V++ADR A EA+ L+G L G +++ SP
Sbjct: 408 LEDIFCRFGNLIEVYLVSGKNVGYVKYADRKSANEAITTLHGKILNGVRLKVMLADSP 465
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 172 (65.6 bits), Expect = 9.9e-13, P = 9.9e-13
Identities = 45/140 (32%), Positives = 74/140 (52%)
Query: 115 RNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH 174
+++ TGQ +GYGF+EF+S A+ ++ N + G+ R+N AS A K D +
Sbjct: 3 KDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN 58
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
IF+G+L ++ + +L +TF A + K++ D TG +KGY F+ F A+
Sbjct: 59 -IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 117
Query: 235 EMNGVFCSTRPMRIGPATNK 254
MNG + RP+ + A K
Sbjct: 118 AMNGQYLCNRPITVSYAFKK 137
Score = 135 (52.6 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 46/151 (30%), Positives = 75/151 (49%)
Query: 209 DRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQ 268
DR+TG+ +GYGFV F E + A+ MN + +P+R+ NK SA +N V
Sbjct: 4 DRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRV----NK--ASAHNKNLDVGA 57
Query: 269 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV-KI---P-AGKRCG--FVQFADR 321
+ +F+GNLD + ++ L + FS +G ++ KI P G G F+ FA
Sbjct: 58 N--------IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 109
Query: 322 SCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 352
++ A+ +NG L + I +S+ +K
Sbjct: 110 DASDAAIEAMNGQYLCNRPITVSYAFKKDSK 140
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 193 (73.0 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 69/289 (23%), Positives = 129/289 (44%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +++ +L + L F G +V+ KV + G+ GYGF++F A +
Sbjct: 111 VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAI 169
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDT--PDH---TIFVGDLAADVTDYMLQETFR 195
QT N T + + E G K+ D P+ +++ +L ADV++ +L+E F
Sbjct: 170 QTLNSTIVADKE-------IYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKF- 221
Query: 196 ARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
A + + D +GY FV F + + RA +NG ++ + +G A KK
Sbjct: 222 AEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRA-QKK 279
Query: 256 TVSASYQNSQVAQSDDDPNN----TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-- 309
Q + ++ + ++V N++ VT+E LR+ FSQ G + K+
Sbjct: 280 AEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE 339
Query: 310 -GKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
GK GFV F+ A +A++ +G G+ + ++ + +++ Q
Sbjct: 340 KGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQ 388
Score = 173 (66.0 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 63/263 (23%), Positives = 117/263 (44%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L FA + +V++ ++ +G+ YG+ F+SR A ++
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + NG+ R+ W+ +R+ + +FV +L VT+ +LQ+ F+ ++ +
Sbjct: 85 KNNSLL-NGKM-IRVMWSVRAPDARRNGVGN--VFVKNLPESVTNAVLQDMFK-KFGNIV 139
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP---ATNKKTVSA 259
KV G+++GYGFV+F E A+ +N + + + +G T++
Sbjct: 140 SCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEE 198
Query: 260 SYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC---GFV 316
Y N + D D + + E E F + L K + C FV
Sbjct: 199 KYTNLYMKNLDADVSEDLL----------REKFAE-FGKIVSLAIAK-DENRLCRGYAFV 246
Query: 317 QFADRSCAEEALRMLNGTQLGGQ 339
F + A A +NGT+ G +
Sbjct: 247 NFDNPEDARRAAETVNGTKFGSK 269
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 171 (65.3 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 54/191 (28%), Positives = 93/191 (48%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
+++VGDL +VT+ ML E F P ++ D++T R+ GY +V + + RA+
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILS-IRLCRDKVTRRSLGYAYVNYQQPVDAKRALE 61
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
MN + RP+RI +++ S + S V VF+ NL + ++ L
Sbjct: 62 TMNFDVINGRPVRI--MWSQR--DPSLRKSGVGN---------VFIKNLGKTIDNKALYN 108
Query: 295 LFSQYGQLVHVKIPAGKR----CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350
+FS +G ++ K+ ++ GFV F + AE A+ LNG L + I + GR S
Sbjct: 109 IFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDALNGMFLNYRKIFV--GRFKS 166
Query: 351 NKQAQPDPNQW 361
+K+ + + W
Sbjct: 167 HKEREAERGAW 177
Score = 168 (64.2 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 45/167 (26%), Positives = 84/167 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E+ L F+ G ++++++ R+K T + GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + NG R+ W+ ++ + +F+ +L + + L F A + +
Sbjct: 63 MNFDVI-NGRP-VRIMWSQRDPSLRKSGVGN--VFIKNLGKTIDNKALYNIFSA-FGNIL 117
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KV D G KGYGFV F + RA+ +NG+F + R + +G
Sbjct: 118 SCKVACDE-KG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVG 162
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 170 (64.9 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 52/191 (27%), Positives = 93/191 (48%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
+++VGDL +VT+ ML E F P ++ D++T R+ GY +V + + RA+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILS-IRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
+N RP+RI +++ S + S V VF+ NL + ++ L
Sbjct: 62 TLNFDVIKGRPVRI--MWSQR--DPSLRKSGVGN---------VFIKNLGKTIDNKALYN 108
Query: 295 LFSQYGQLVHVKIPAGKR----CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350
+FS +G ++ K+ ++ GFV F + AE A+ ++NG L + I + GR S
Sbjct: 109 IFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFV--GRFKS 166
Query: 351 NKQAQPDPNQW 361
+K+ + + W
Sbjct: 167 HKEREAERGAW 177
Score = 164 (62.8 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 44/167 (26%), Positives = 82/167 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G ++++++ R+K T + GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + +F+ +L + + L F A + +
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--VFIKNLGKTIDNKALYNIFSA-FGNIL 117
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KV D G KGYGFV F + RA+ MNG+F + R + +G
Sbjct: 118 SCKVACDE-KG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVG 162
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 180 (68.4 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 50/178 (28%), Positives = 88/178 (49%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++IG L T N F GE+ ++R++ TGQ G+GFI F + ++V++
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED- 79
Query: 144 NGTPMPNGEQ-NFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
T + NG+Q + G + D IFVG + + VT+ L++ F A+Y +
Sbjct: 80 --THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFF-AKYGNVV 136
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
+V+ D T R++G+GFV F E +++ N + + + I A KK+++ S
Sbjct: 137 EHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRS 194
Score = 154 (59.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 52/223 (23%), Positives = 94/223 (42%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+G L D T+ + + F +Y + ++ DR TG+ +G+GF+ F D S + + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHF-GKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 236 MNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLREL 295
+ + + + + I K+T+ +Q D +FVG + S VT++ L++
Sbjct: 80 THVI--NGKQVEI-----KRTIPKGAGGNQ----SKDIKTKKIFVGGIPSTVTEDELKDF 128
Query: 296 FSQYGQLVHVKI------PAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL------ 343
F++YG +V ++ + GFV F +E L N + + +
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
Query: 344 -SWGRSPSNKQAQPDPNQWNAGYYGYAQGYENYGYAAAAPQDP 385
S RSP + + P N Y Y Y + P P
Sbjct: 189 KSLNRSPPSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGP 231
Score = 43 (20.2 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 345 WGRSPSNKQAQPDPNQWNAGYYGYAQG---------YENYG 376
+G P ++ P AG YGY +G Y NYG
Sbjct: 225 YGHPPGPIRSHGGPASRYAGGYGYGRGSVGPEFGGGYNNYG 265
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 146 (56.5 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 47/186 (25%), Positives = 87/186 (46%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTG-QIE----------GYGFIEFISRAGAERVLQ 141
M + L + F+ GEV + K+IR+K G ++ GYGF+ +++ AER +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAIN 90
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
T NG + + + ++++A + D +++ L +T +++ F +
Sbjct: 91 TLNGLRLQS--KTIKVSFAR----PSSESIKDANLYISGLPRTMTQKDVEDMFLP-FGHI 143
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASY 261
++V++D+ TG ++G F+RF SE A+ NG P P T K + +
Sbjct: 144 INSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG---HKPPGSSEPITVKFAANPN- 199
Query: 262 QNSQVA 267
QN VA
Sbjct: 200 QNKNVA 205
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 49/205 (23%), Positives = 95/205 (46%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTG---RTK-------- 216
RDD + V L ++T L+ F + + AK++ D++ G R+
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGFEMRSSSLSKGHSL 72
Query: 217 GYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNT 276
GYGFV + + + RA+ +NG +R+ KT+ S+ ++S D N
Sbjct: 73 GYGFVNYLNAKDAERAINTLNG-------LRL----QSKTIKVSFARPS-SESIKDAN-- 118
Query: 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRM 330
+++ L +T + + ++F +G +++ ++ + G F++F RS AEEA+
Sbjct: 119 -LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIAS 177
Query: 331 LNGTQLGGQN--IRLSWGRSPS-NK 352
NG + G + I + + +P+ NK
Sbjct: 178 FNGHKPPGSSEPITVKFAANPNQNK 202
Score = 90 (36.7 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 119 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 178
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 179 NGHKPPGSSEPITVKFAA 196
Score = 88 (36.0 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 257 IFVYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 315
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ T+K
Sbjct: 316 LNGYRLGDKTLQVSFKTSK 334
Score = 83 (34.3 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ S S+K
Sbjct: 317 NGYRLGDKTLQVSFKTSKSHK 337
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 169 (64.5 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 43/139 (30%), Positives = 71/139 (51%)
Query: 85 WIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144
++G+L + E + F+ G K+I + T + Y F+EF A L N
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 59
Query: 145 GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA 204
G + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A + A
Sbjct: 60 GRKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRISDA 116
Query: 205 KVVIDRLTGRTKGYGFVRF 223
+VV D TG++KGYGFV F
Sbjct: 117 RVVKDMATGKSKGYGFVSF 135
Score = 126 (49.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 42/151 (27%), Positives = 73/151 (48%)
Query: 177 FVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236
+VG+L+ DVT+ ++ + F P K K+++D T Y FV F + A+ M
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 58
Query: 237 NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF 296
NG R + +G K V ++ + +Q D N+ VFVG+L +T E ++ F
Sbjct: 59 NG-----RKI-MG-----KEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF 107
Query: 297 SQYGQLVHVKI----PAGKR--CGFVQFADR 321
+ +G++ ++ GK GFV F ++
Sbjct: 108 APFGRISDARVVKDMATGKSKGYGFVSFFNK 138
Score = 111 (44.1 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 279 FVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAEEALRMLNG 333
+VGNL VT+ + +LFSQ G + K+ AG C FV+F + A AL +NG
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAMNG 60
Query: 334 TQLGGQNIRLSWGRSPSNKQ 353
++ G+ ++++W +PS+++
Sbjct: 61 RKIMGKEVKVNWATTPSSQK 80
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 189 (71.6 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 55/185 (29%), Positives = 93/185 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E T+++G L + +D+ +L F G +V +VI + Q+G+ +GYG+++F + A+
Sbjct: 261 ETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAA 320
Query: 140 LQTFNGTPMPNGEQ-NFRLN---------WASFGAGEKRDDT--PDHTIFVGDLAADVTD 187
+ NGT +G N L+ +A AG D P T+FVG+L+ + T+
Sbjct: 321 VAA-NGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATE 379
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L F + ++ D +GR KG+G+V F D + + EMNG F + RP R
Sbjct: 380 DDLSTAFGG-CGDIQSIRLPTDPQSGRLKGFGYVTFSD-IDSAKKCVEMNGHFIAGRPCR 437
Query: 248 IGPAT 252
+ +T
Sbjct: 438 LDFST 442
Score = 185 (70.2 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 56/188 (29%), Positives = 93/188 (49%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
+D T+FVG L+ +V D L + F Y + GA+V++D +GR+KGYG+V F +
Sbjct: 257 QDSNETCTVFVGRLSWNVDDQWLGQEFE-EYGTIVGARVIMDGQSGRSKGYGYVDF-ETP 314
Query: 228 EQLRAMTEMNGVF-CSTRPMRIGPATNKKTVSASYQNSQVAQSDD---DPNNTTVFVGNL 283
E +A NG R + + + + Y + D +P++T VFVGNL
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDT-VFVGNL 373
Query: 284 DSIVTDEHLRELFSQYGQLVHVKIP----AG--KRCGFVQFADRSCAEEALRMLNGTQLG 337
T++ L F G + +++P +G K G+V F+D A++ + M NG +
Sbjct: 374 SFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM-NGHFIA 432
Query: 338 GQNIRLSW 345
G+ RL +
Sbjct: 433 GRPCRLDF 440
>UNIPROTKB|F1NEX8 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 OMA:DIWVVKD GeneTree:ENSGT00680000100059
EMBL:AADN02020000 IPI:IPI00596036 ProteinModelPortal:F1NEX8
Ensembl:ENSGALT00000014983 Uniprot:F1NEX8
Length = 502
Score = 141 (54.7 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 42/153 (27%), Positives = 77/153 (50%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
+ E D+ P+ +FV L D + +++E F A + + ++ D+ T ++G F++F
Sbjct: 44 SAECLDEPPNSRVFVV-LGKDAGEALIRERF-APFGDIQNIWLLRDKRTNESRGIAFIKF 101
Query: 224 GDESEQLRAMTEMNG--VFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVG 281
S+ RAM EM+G + T+P+++ A ++ S S+++ + D T +FV
Sbjct: 102 ARSSQACRAMEEMHGRSLVPDTKPIKVFIAQSR--ASGSHRDVE------DEELTRIFV- 152
Query: 282 NLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG 314
+ T+E LRE F YG + + I K G
Sbjct: 153 MIPKTYTEEDLREKFKMYGDIEYCSIIKNKTTG 185
Score = 128 (50.1 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 39/144 (27%), Positives = 72/144 (50%)
Query: 95 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154
E + FA G++ + ++R+K+T + G FI+F + A R ++ +G + +
Sbjct: 66 EALIRERFAPFGDIQNIWLLRDKRTNESRGIAFIKFARSSQACRAMEEMHGRSLVPDTKP 125
Query: 155 FRLNWA-SFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL 211
++ A S +G RD D IFV + T+ L+E F+ Y + ++ ++
Sbjct: 126 IKVFIAQSRASGSHRDVEDEELTRIFVM-IPKTYTEEDLREKFKM-YGDIEYCSIIKNKT 183
Query: 212 TGRTKGYGFVRFGDESEQLRAMTE 235
TG +KG G+VR+ S+ RA+ E
Sbjct: 184 TGESKGLGYVRYLKPSQAARAIEE 207
Score = 108 (43.1 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 292 LRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP-- 349
L ++F ++G L+ V + AGK + +FADR+ A EA+ L+G + G +++ SP
Sbjct: 434 LEDVFCRFGNLIKVYLVAGKNVAYAKFADRASASEAITALHGKIVNGVRLKVRLADSPTE 493
Query: 350 -SNKQ 353
SNK+
Sbjct: 494 ESNKR 498
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 168 (64.2 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 52/191 (27%), Positives = 92/191 (48%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
+++VGDL +VT+ ML E F P ++ D++T R+ GY +V + + RA+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILS-IRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
+N RP+RI +++ S + S V VF+ NL + ++ L
Sbjct: 62 TLNFDVIKGRPVRI--MWSQR--DPSLRKSGVGN---------VFIKNLGKTIDNKALYN 108
Query: 295 LFSQYGQLVHVKIPAGKR----CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350
+FS +G ++ K+ ++ GFV F + AE A+ +NG L + I + GR S
Sbjct: 109 IFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV--GRFKS 166
Query: 351 NKQAQPDPNQW 361
+K+ + + W
Sbjct: 167 HKEREAERGAW 177
Score = 165 (63.1 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 44/167 (26%), Positives = 82/167 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G ++++++ R+K T + GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + +F+ +L + + L F A + +
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--VFIKNLGKTIDNKALYNIFSA-FGNIL 117
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KV D G KGYGFV F + RA+ MNG+F + R + +G
Sbjct: 118 SCKVACDE-KG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG 162
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 168 (64.2 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 52/191 (27%), Positives = 92/191 (48%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
+++VGDL +VT+ ML E F P ++ D++T R+ GY +V + + RA+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILS-IRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
+N RP+RI +++ S + S V VF+ NL + ++ L
Sbjct: 62 TLNFDVIKGRPVRI--MWSQR--DPSLRKSGVGN---------VFIKNLGKTIDNKALYN 108
Query: 295 LFSQYGQLVHVKIPAGKR----CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350
+FS +G ++ K+ ++ GFV F + AE A+ +NG L + I + GR S
Sbjct: 109 IFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV--GRFKS 166
Query: 351 NKQAQPDPNQW 361
+K+ + + W
Sbjct: 167 HKEREAERGAW 177
Score = 165 (63.1 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 44/167 (26%), Positives = 82/167 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G ++++++ R+K T + GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + +F+ +L + + L F A + +
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--VFIKNLGKTIDNKALYNIFSA-FGNIL 117
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KV D G KGYGFV F + RA+ MNG+F + R + +G
Sbjct: 118 SCKVACDE-KG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG 162
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 143 (55.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 46/147 (31%), Positives = 72/147 (48%)
Query: 217 GYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNT 276
GYGFV + D + +A+ +NG+ T KT+ SY A S D N
Sbjct: 121 GYGFVNYIDPKDAEKAINTLNGLRLQT-----------KTIKVSYARPSSA-SIRDAN-- 166
Query: 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA------GKRCGFVQFADRSCAEEALRM 330
++V L +T + L +LFSQYG+++ +I + GF++F R AEEA++
Sbjct: 167 -LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 225
Query: 331 LNGTQLGG--QNIRLSWGRSPSNKQAQ 355
LNG + G + I + + +PS K Q
Sbjct: 226 LNGQKPPGATEPITVKFANNPSQKTNQ 252
Score = 139 (54.0 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 39/148 (26%), Positives = 74/148 (50%)
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
GYGF+ +I AE+ + T NG + + ++++A + RD ++V L
Sbjct: 121 GYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIRDAN----LYVSGLPK 174
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC-- 241
+T L++ F ++Y +++++D++TG ++G GF+RF E A+ +NG
Sbjct: 175 TMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 233
Query: 242 STRPMRIGPATNKKTVSASYQNSQVAQS 269
+T P+ + A N + SQ+ QS
Sbjct: 234 ATEPITVKFANNPSQKTNQAILSQLYQS 261
Score = 100 (40.3 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +LA D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 319 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 377
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG R +++ TNK
Sbjct: 378 LNGYRLGDRVLQVSFKTNK 396
Score = 93 (37.8 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 167 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 226
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 227 NGQKPPGATEPITVKFAN 244
Score = 74 (31.1 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 332 NGTQLGGQNIRLSWGRSPSNK 352
NG +LG + +++S+ + ++K
Sbjct: 379 NGYRLGDRVLQVSFKTNKTHK 399
Score = 52 (23.4 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTG-QIEGY 125
M + L + F GE+ + K++R+K TG Q Y
Sbjct: 60 MTQEELKSLFGSIGEIESCKLVRDKITGNQFREY 93
>UNIPROTKB|Q3MHF0 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD GeneTree:ENSGT00680000100059
OrthoDB:EOG43R3MJ EMBL:DAAA02004143 EMBL:BC105262 IPI:IPI00711970
RefSeq:NP_001124225.1 UniGene:Bt.48322 STRING:Q3MHF0
Ensembl:ENSBTAT00000008111 GeneID:535331 KEGG:bta:535331
InParanoid:Q3MHF0 NextBio:20876704 Uniprot:Q3MHF0
Length = 474
Score = 130 (50.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 49/166 (29%), Positives = 81/166 (48%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P+ IF+ ++ ++ +L+E F + + + VV D+ T +KG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTSESVLRERF-SPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
RAM EM+G C T P P K A ++S + +D T +FV + T
Sbjct: 79 ACRAMEEMHGQ-CLT-PSDTKPI---KVFIAQSRSSGSHRDVEDEELTRIFV-MIPKSYT 132
Query: 289 DEHLRELFSQYGQLVHVKI----PAG--KRCGFVQFADRSCAEEAL 328
+E LRE F +G + + I G K G+V++ S A +A+
Sbjct: 133 EEDLREKFKVFGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 126 (49.4 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 38/146 (26%), Positives = 78/146 (53%)
Query: 92 WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM-PN 150
+ E+ L F+ GE+ + V+R+K T + +G F++F + A R ++ +G + P+
Sbjct: 35 YTSESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLTPS 94
Query: 151 GEQNFRLNWA-SFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVV 207
+ ++ A S +G RD + + T IFV + T+ L+E F+ + + ++
Sbjct: 95 DTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKV-FGDIEYCSII 152
Query: 208 IDRLTGRTKGYGFVRFGDESEQLRAM 233
+++TG +KG G+VR+ S+ +A+
Sbjct: 153 KNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 108 (43.1 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 271 DDPNNTTVF-VGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALR 329
D P +F V N + D L ++F ++G L+ V + +GK G+ ++ADR A +A+
Sbjct: 385 DTPVKERLFIVFNPHPLPLDV-LEDIFCRFGNLIEVYLVSGKNVGYAKYADRLSANDAIT 443
Query: 330 MLNGTQLGGQNIRLSWGRSP---SNKQ 353
L+G L G +++ SP SNK+
Sbjct: 444 TLHGKILNGVRLKVMLADSPREESNKR 470
Score = 64 (27.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 95 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
E L F G++ +I+NK TG+ +G G++ ++ + A + ++
Sbjct: 133 EEDLREKFKVFGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIE 179
Score = 53 (23.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 295 LFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
++++Y +L + P G R G D S A + LR + + Q + W +PS +Q
Sbjct: 298 IYAKY-KLHGFQYPPGNRIGVSFIDDGSNATDLLRKMATQMVAAQLASIVWN-NPSQQQ 354
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 166 (63.5 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 52/191 (27%), Positives = 92/191 (48%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
+++VGDL +VT+ ML E F P ++ D++T R+ GY +V + + RA+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILS-IRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 294
+N RP+RI +++ S + S V VF+ NL + ++ L
Sbjct: 62 TLNFDVIKGRPVRI--MWSQR--DPSLRKSGVGN---------VFIKNLGKTIDNKALYN 108
Query: 295 LFSQYGQLVHVKIPAGKR----CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350
+FS +G ++ K+ ++ GFV F + AE A+ +NG L + I + GR S
Sbjct: 109 IFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV--GRFKS 166
Query: 351 NKQAQPDPNQW 361
+K+ + + W
Sbjct: 167 HKEREAERGAW 177
Score = 163 (62.4 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 44/167 (26%), Positives = 82/167 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G ++++++ R+K T + GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + +F+ +L + + L F A + +
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--VFIKNLGKTIDNKALYNIFSA-FGNIL 117
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KV D G KGYGFV F + RA+ MNG+F + R + +G
Sbjct: 118 SCKVACDE-KG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG 162
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 139 (54.0 bits), Expect = 6.7e-12, Sum P(3) = 6.7e-12
Identities = 33/121 (27%), Positives = 63/121 (52%)
Query: 118 QTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIF 177
Q GQ GYGF+ ++ AE+ + T NG + N + ++++A + ++
Sbjct: 80 QQGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQN--KVIKVSYAR----PSSESIKGANLY 133
Query: 178 VGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237
V L +++ L+ F A + ++++ D ++G +KG GF+RF +E RA+ E+N
Sbjct: 134 VSGLPKNLSQPDLEGMF-ASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELN 192
Query: 238 G 238
G
Sbjct: 193 G 193
Score = 112 (44.5 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 40/155 (25%), Positives = 72/155 (46%)
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDD 272
G++ GYGFV + + +A+ +NG +R+ K + SY S +
Sbjct: 82 GQSLGYGFVNYVRAEDAEKAVNTLNG-------LRL----QNKVIKVSYARP----SSES 126
Query: 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA------GKRCGFVQFADRSCAEE 326
++V L ++ L +F+ +G+++ +I K GF++F R+ AE
Sbjct: 127 IKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAER 186
Query: 327 ALRMLNG-TQLG-GQNIRLSWGRSPSNK-QAQPDP 358
A++ LNG T G + I + + +PSN +AQ P
Sbjct: 187 AIQELNGKTPKGYAEPITVKFANNPSNSAKAQIAP 221
Score = 102 (41.0 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +LA + + +L + F + + + KV+ D T + KG+GFV + E + A+
Sbjct: 275 IFVYNLAPETEENVLWQLF-GPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQS 333
Query: 236 MNGVFCSTRPMRIGPATNK-KT 256
+NG R +++ TNK KT
Sbjct: 334 LNGYTLGNRVLQVSFKTNKTKT 355
Score = 68 (29.0 bits), Expect = 6.7e-12, Sum P(3) = 6.7e-12
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 331
+FV NL + L +LF +G + VK+ +C GFV + A A++ L
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 332 NGTQLGGQNIRLSW 345
NG LG + +++S+
Sbjct: 335 NGYTLGNRVLQVSF 348
Score = 52 (23.4 bits), Expect = 6.7e-12, Sum P(3) = 6.7e-12
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 80 EIRT-LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQI 122
E RT L + L M + + + F+ GE+ + K++R+K +G +
Sbjct: 23 ESRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNL 66
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 182 (69.1 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 50/174 (28%), Positives = 85/174 (48%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV V V +++ T + YGFIE+ S A+ ++
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + +G+ R+N AS +K+ +F+G+L DV + +L +TF A
Sbjct: 86 LNMIKL-HGKP-IRVNKAS---QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIAS 140
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
K++ D TG ++G+GF+ + A+ M G + S R + + A K T
Sbjct: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDT 194
Score = 133 (51.9 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 49/187 (26%), Positives = 86/187 (45%)
Query: 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232
D T++VG L A +++ +L E F P V DR+T + YGF+ + E + A
Sbjct: 24 DATVYVGGLDAQLSEELLWELFVQAGPVVN-VYVPKDRVTNLHQNYGFIEYRSEEDADYA 82
Query: 233 MTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHL 292
+ +N + +P+R+ A+ K +S D N +F+GNLD V ++ L
Sbjct: 83 IKVLNMIKLHGKPIRVNKASQDK------------KSLDVGAN--LFIGNLDPDVDEKLL 128
Query: 293 RELFSQYGQLV-HVKI---P-AG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345
+ FS +G + + KI P G + GF+ + ++ A+ + G L + I +S+
Sbjct: 129 YDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSY 188
Query: 346 GRSPSNK 352
K
Sbjct: 189 AYKKDTK 195
Score = 112 (44.5 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 30/94 (31%), Positives = 53/94 (56%)
Query: 257 VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK----- 311
V A+ A+ + D TV+VG LD+ +++E L ELF Q G +V+V +P +
Sbjct: 9 VGANLLGQHSAERNQD---ATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLH 65
Query: 312 -RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344
GF+++ A+ A+++LN +L G+ IR++
Sbjct: 66 QNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVN 99
Score = 40 (19.1 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 344 SWGRSPSNKQAQPDPNQWNAGYYGYAQGYENYGYAAAA 381
++G SN + DP+ N+ +G+ Y+++ + AA
Sbjct: 134 AFGVIASNPKIMRDPDTGNSRGFGFIS-YDSFEASDAA 170
WARNING: HSPs involving 952 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 406 309 0.00079 116 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1202
No. of states in DFA: 614 (65 KB)
Total size of DFA: 234 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.88u 0.06s 26.94t Elapsed: 00:00:04
Total cpu time: 27.01u 0.06s 27.07t Elapsed: 00:00:04
Start: Sat May 11 01:43:53 2013 End: Sat May 11 01:43:57 2013
WARNINGS ISSUED: 2