BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015450
(406 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 485 bits (1248), Expect = e-136, Method: Compositional matrix adjust.
Identities = 240/357 (67%), Positives = 274/357 (76%), Gaps = 11/357 (3%)
Query: 56 WATQAAAPQAAGVAVP---PQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVK 112
WA Q + Q +A P G P E+R+LWIGDLQYWMDE YL+TCF HTGE+V+ K
Sbjct: 55 WAQQPSQQQYGAMATTNPNPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAK 114
Query: 113 VIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP 172
VIRNKQTGQ EGYGF+EF S A AE +LQT+NGT MPN EQNFR+NWAS GAGE+RDD+
Sbjct: 115 VIRNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSA 174
Query: 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232
+HTIFVGDLAADVTDY+LQETF++ Y S +GAKVV DR+TGR+KGYGFV+F DESEQLRA
Sbjct: 175 EHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRA 234
Query: 233 MTEMNGVFCSTRPMRIGPATNKKTV----SASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288
MTEMNGV CSTRPMRIGPA NKK V A+YQN Q Q + DPNNTT+FVG LD V
Sbjct: 235 MTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVA 294
Query: 289 DEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348
+EHLR++FS YG+LVHVKI AGKRCGFVQF R+ AE+AL LNGTQLGGQ+IRLSWGRS
Sbjct: 295 EEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRS 354
Query: 349 PSNKQAQPDPNQWNAGYYGYAQGYENYGYAAAAP--QDPSMYYGGYPGYGNYQQPQQ 403
PS+KQ D QW Y + Y AP QDP+MYYG YPGY NYQQPQQ
Sbjct: 355 PSSKQT--DQTQWGGSGGAYYGYGQGYEAYGYAPPAQDPNMYYGNYPGYANYQQPQQ 409
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 480 bits (1236), Expect = e-135, Method: Compositional matrix adjust.
Identities = 258/393 (65%), Positives = 292/393 (74%), Gaps = 35/393 (8%)
Query: 1 MMQPAPGAVPP--PPPPMAAHQYQYQQQAPPQQQPPPQPSPYMMMMPPQPQAQPPAMWAT 58
M QP PG + P PPP A QY YQQ PP PP MW
Sbjct: 2 MQQPPPGGILPHHAPPPSAQQQYGYQQPYGIAGAAPP----------------PPQMWNP 45
Query: 59 QAAAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ 118
QAAAP P Q EIRTLWIGDLQYWMDE +L CFAHTGE+V+ KVIRNKQ
Sbjct: 46 QAAAP-------PSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQ 98
Query: 119 TGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG-EQNFRLNWASFGAGEKRDDTPDHTIF 177
TGQ+EGYGFIEF S A AERVLQTFN P+P+ +Q FRLNWAS +G+KRDD+PD+TIF
Sbjct: 99 TGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIF 158
Query: 178 VGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237
VGDLAADVTDY+L ETFRA YPS KGAKVVIDR+TGRTKGYGFVRF DESEQ+RAMTEMN
Sbjct: 159 VGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMN 218
Query: 238 GVFCSTRPMRIGPATNKKTVSA---SYQNSQV-AQSDDDPNNTTVFVGNLDSIVTDEHLR 293
GV CSTRPMRIGPA +KK V+ SYQ+S +D+DPNNTTVFVG LD+ VTD+HL+
Sbjct: 219 GVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLK 278
Query: 294 ELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
+FSQYG++VHVKIPAGKRCGFVQF+++SCAEEALRMLNG QLGG +RLSWGRSPSNKQ
Sbjct: 279 NVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQ 338
Query: 354 AQPDPNQWNAGYYGYAQGYENYGYAAAAPQDPS 386
+ DP+Q+ Y GY QG E YGY PQDP+
Sbjct: 339 SG-DPSQFY--YGGYGQGQEQYGY--TMPQDPN 366
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/327 (64%), Positives = 253/327 (77%), Gaps = 12/327 (3%)
Query: 69 AVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFI 128
+ Q G ++++LWIGDLQ WMDE Y+ + FA +GE + KVIRNK TGQ EGYGFI
Sbjct: 47 GIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFI 106
Query: 129 EFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT--PDHTIFVGDLAADVT 186
EF+S + AERVLQT+NG PMP+ EQ FRLNWA GAGEKR T PDHTIFVGDLA +VT
Sbjct: 107 EFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVT 166
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
DYML +TF+ Y S KGAKVV+DR TGR+KGYGFVRF DE+EQ+RAMTEMNG +CSTRPM
Sbjct: 167 DYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPM 226
Query: 247 RIGPATNKKTV---SASYQNSQVAQS-DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL 302
RIGPA NK + A YQN+Q A + D+DPNNTT+FVG LD+ VTD+ L+ +F Q+G+L
Sbjct: 227 RIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGEL 286
Query: 303 VHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 362
+HVKIP GKRCGFVQ+A+++ AE AL +LNGTQLGGQ+IRLSWGRSP NKQ+ D QWN
Sbjct: 287 LHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSP-NKQS--DQAQWN 343
Query: 363 -AGYYGY-AQGYENYGYAAAAP-QDPS 386
GYYGY Q YGYAA P QDP+
Sbjct: 344 GGGYYGYPPQPQGGYGYAAQPPTQDPN 370
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/315 (64%), Positives = 238/315 (75%), Gaps = 9/315 (2%)
Query: 52 PPAMWATQAAAPQAAGVAVPPQQQ-----GQPGEIRTLWIGDLQYWMDETYLNTCFAHTG 106
PPA W Q+A G GEIR+LWIGDLQ WMDE YL F TG
Sbjct: 45 PPAGWNQQSAPSSGQPQQQQYGGGGSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTG 104
Query: 107 EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGE 166
E A KVIRNKQ G EGYGFIEF++ A AER LQT+NG PMP+ EQ FRLNWA GAGE
Sbjct: 105 EATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGE 164
Query: 167 KRD-DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD 225
+R + P+HT+FVGDLA DVTD+ML ETF+A Y S KGAKVV DR TGR+KGYGFVRF D
Sbjct: 165 RRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFAD 224
Query: 226 ESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS---ASYQNSQVAQSDDDPNNTTVFVGN 282
ESEQ+RAMTEMNG +CS+RPMR GPA NKK ++ ASYQN+Q + DP NTT+FVG
Sbjct: 225 ESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGA 284
Query: 283 LDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
+D VT++ L+ +F Q+G+LVHVKIPAGKRCGFVQ+A+R+CAE+AL +LNGTQLGGQ+IR
Sbjct: 285 VDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIR 344
Query: 343 LSWGRSPSNKQAQPD 357
LSWGRSPSNKQ QPD
Sbjct: 345 LSWGRSPSNKQTQPD 359
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/355 (59%), Positives = 258/355 (72%), Gaps = 25/355 (7%)
Query: 71 PPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEF 130
P Q Q + +T+WIGDLQ WMDE+YL++CF+ GEV++VK+IRNKQTGQ E YGF+EF
Sbjct: 73 PTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEF 132
Query: 131 ISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT-PDHTIFVGDLAADVTDYM 189
+ A AE+VLQ++NGT MPN EQ FRLNWA F GEKR +T D +IFVGDLA+DVTD M
Sbjct: 133 NTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTM 192
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
L++TF +RYPS KGAKVV+D TG +KGYGFVRFGDESE+ RAMTEMNGV+CS+R MRIG
Sbjct: 193 LRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIG 252
Query: 250 PATNKK------------TVSASYQNSQVA----QSDDDPNNTTVFVGNLDSIVTDEHLR 293
AT KK +S Y ++ A QSD D +NTT+FVG LDS VTDE LR
Sbjct: 253 VATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELR 312
Query: 294 ELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
+ F+Q+G++V VKIPAGK CGFVQF+DRS A+EA++ L+G +G Q +RLSWGRSP+NKQ
Sbjct: 313 QSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQ 372
Query: 354 AQPDP-NQWNAGYYGYAQGYENYGYAAAAPQDPSMY-----YGGYPG-YGNYQQP 401
+ D +QWN GY G Q Y YGY A+ QD MY YG YGN+QQP
Sbjct: 373 MRTDSGSQWNGGYNG-RQNYGGYGYGASQNQDSGMYATGAAYGASSNRYGNHQQP 426
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/334 (58%), Positives = 236/334 (70%), Gaps = 14/334 (4%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCF--AHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
GE +T+W+GDLQ WMDE YLN+ F A E+V++KVIRNK G EGYGF+EF S A
Sbjct: 100 GENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVA 159
Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETF 194
++VLQ FNG PMPN +Q FRLNWASF GEKR ++ PD +IFVGDLA DV+D +L ETF
Sbjct: 160 DKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETF 219
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+YPS K AKVV+D TGR+KGYGFVRFGDE+E+ +AMTEMNGV CS+R MRIGPAT +
Sbjct: 220 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 279
Query: 255 KTVSASYQ-----NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA 309
KT Q + +S+ D NTT+FVG LDS VTDE L++ FS++G++V VKIP
Sbjct: 280 KTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV 339
Query: 310 GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD-PNQWNAGYYGY 368
GK CGFVQF +R AEEAL LNGT +G Q +RLSWGR+P+NKQ + NQW YYG
Sbjct: 340 GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYG- 398
Query: 369 AQGYENYGYAAAAPQDPSMYYGG--YPGYGNYQQ 400
Q Y YGY P DP MY YP YG +QQ
Sbjct: 399 GQFYNGYGYMVPQP-DPRMYPAAPYYPMYGGHQQ 431
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/311 (57%), Positives = 225/311 (72%), Gaps = 21/311 (6%)
Query: 75 QGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRA 134
+G +++TLW+GDL +WMDETYL++CF+HTGEV +VKVIRNK T Q EGYGF+EF+SRA
Sbjct: 101 RGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRA 160
Query: 135 GAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQE 192
AE VLQ ++G+ MPN +Q FR+NWASF GEKR ++ PD ++FVGDL+ DVTD +L E
Sbjct: 161 AAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHE 220
Query: 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
TF RYPS K AKVVID TGR+KGYGFVRFGDE+E+ RA+TEMNG +CS R MR+G AT
Sbjct: 221 TFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIAT 280
Query: 253 NKKTVSASYQNSQVA-----------------QSDDDPNNTTVFVGNLDSIVTDEHLREL 295
K+ ++ Q+S A QSD + N T+FVG +D V DE LR+
Sbjct: 281 PKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQP 340
Query: 296 FSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
FSQ+G++V VKIP GK CGFVQFADR AE+A+ LNGT +G +RLSWGRSP NKQ +
Sbjct: 341 FSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWR 399
Query: 356 PDPN-QWNAGY 365
D QWN GY
Sbjct: 400 GDSGQQWNGGY 410
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/348 (55%), Positives = 232/348 (66%), Gaps = 29/348 (8%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E+RTLWIGDLQYW+DE YL +CF+ TGE+V+VKVIRNK TGQ EGYGFIEFIS A AER
Sbjct: 22 EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERT 81
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
LQT+NGT MP E FRLNWASFG+G+K D PDH+IFVGDLA DVTDY+LQETFR Y
Sbjct: 82 LQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYS 141
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSA 259
S +GAKVV D TGR+KGYGFV+F +ESE+ RAM EMNG++CSTRPMRI AT KK V
Sbjct: 142 SVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGV 201
Query: 260 SYQ-------------------NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYG 300
Q + VA + D TT+ V NLD VT+E L++ FSQ G
Sbjct: 202 QQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLG 261
Query: 301 QLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK--QAQPDP 358
++++VKIPA K G+VQF R AEEA++ + G +G Q +R+SW ++P Q DP
Sbjct: 262 EVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGWVTQADP 321
Query: 359 NQWNAGYYGYAQGYENYGYAAAAPQDPSMYYGGYPGYGNYQQPQQPQQ 406
NQWN Y G YA A QDPS+Y YG Y PQ PQQ
Sbjct: 322 NQWNG---YYGYGQGYDAYAYGATQDPSVY-----AYGGYGYPQYPQQ 361
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/334 (57%), Positives = 236/334 (70%), Gaps = 14/334 (4%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGE--VVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
GE +T+W+GDL +WMDE YLN+ FA E +V+VKVIRNK G EGYGF+EF S A
Sbjct: 98 GENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVA 157
Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETF 194
++VL+ FNGT MPN +Q FRLNWASF GEKR ++ PD +IFVGDL+ DV+D +L ETF
Sbjct: 158 DKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETF 217
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+YPS K AKVV+D TGR+KGYGFVRFGDE+E+ +AMTEMNGV CS+R MRIGPAT +
Sbjct: 218 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 277
Query: 255 KTVSASYQ-----NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA 309
KT Q N + + + D NTT+FVG LDS VTDE L++ F+++G++V VKIP
Sbjct: 278 KTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV 337
Query: 310 GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD-PNQWNAGYYGY 368
GK CGFVQF +R AEEAL LNGT +G Q +RLSWGR+P+NKQ + NQW YYG
Sbjct: 338 GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYG- 396
Query: 369 AQGYENYGYAAAAPQDPSMYYGG--YPGYGNYQQ 400
Q Y YGY P DP MY YP YG +QQ
Sbjct: 397 GQFYNGYGYMVPQP-DPRMYPAAPYYPMYGGHQQ 429
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 323 bits (827), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 178/350 (50%), Positives = 216/350 (61%), Gaps = 73/350 (20%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+++TLW+GDL +WMDETYL+TCF+HT EV +VKVIRNKQT Q EGYGF+EF+SR+ AE
Sbjct: 117 DVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEA 176
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETFRAR 197
LQ+F+G MPN EQ FRLNWASF GEKR ++ PD +IFVGDLA DV+D +L ETF R
Sbjct: 177 LQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGR 236
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
YPS KGAKVVID TGR+KGYGFVRFGDE+E+ RA
Sbjct: 237 YPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRA------------------------- 271
Query: 258 SASYQNSQV--------------------------------------AQSDDDPNNTTVF 279
+ N + SD + NN+T+F
Sbjct: 272 -MTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIF 330
Query: 280 VGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQ 339
VG LD+ VT+E L + FS +G++V VKIP GK CGFVQFA+R AEEA+ LNGT +G
Sbjct: 331 VGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKN 390
Query: 340 NIRLSWGRSPSNKQAQPDP-NQWNAGYYGYAQGYENYGYAAAAPQDPSMY 388
+RLSWGRSP NKQ + D NQWN G Y QGY N GY A QD +MY
Sbjct: 391 TVRLSWGRSP-NKQWRSDSGNQWNGG-YSRGQGYNN-GY---ANQDSNMY 434
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 221 bits (562), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 115/283 (40%), Positives = 162/283 (57%), Gaps = 18/283 (6%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
TLW+G+L+ W+ E ++ + G+ V VK+IRN+ TG GY F+EF S A + +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
N P+P F+LNWAS G ++ +++IFVGDL+ +V ++ + F +RY S
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
K AK++ D T ++GYGFVRF DE++Q A+ EM G C RP+R+G AT K
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVF 272
Query: 261 ---------------YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
Y +Q D N+TVFVG L V++E L+ LF +G++V+V
Sbjct: 273 SPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYV 332
Query: 306 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348
KIP GK CGFVQF +R AE A+ L G LG IRLSWGR+
Sbjct: 333 KIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 26/208 (12%)
Query: 148 MPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVV 207
M + E N +++G+ + T+++G+L VT+ +Q+ + + K K++
Sbjct: 67 MASNESGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVK-VKLI 125
Query: 208 IDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM-----RIGPATNKKTVSASYQ 262
+R TG GY FV F E AM+ N T + G +K++S + +
Sbjct: 126 RNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWASGGGLREKSISKASE 185
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF-SQYGQLVHVKI------PAGKRCGF 315
S +FVG+L V + + LF S+Y KI + GF
Sbjct: 186 YS-------------IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGF 232
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRL 343
V+F D + + AL + G G + IR+
Sbjct: 233 VRFTDENDQKSALAEMQGQICGDRPIRV 260
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 242 STRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQ 301
S P+ A+N+ S + N ++ ++ TT+++G L+ VT+ ++++++ G+
Sbjct: 59 SQDPISPNMASNESGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGK 118
Query: 302 LVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNI-RLSWG 346
V VK+ + G FV+FA A A+ M N G ++ +L+W
Sbjct: 119 AVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWA 170
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 218 bits (554), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 167/284 (58%), Gaps = 20/284 (7%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVL 140
TLW+GDL+ WMD T++ +A E V VKV+R+K + + Y F++F S A AER L
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDD----TPDHTIFVGDLAADVTDYMLQETFRA 196
+N T +P F+LNWA+ G G + ++ P+ +IFVGDL D L TFR+
Sbjct: 146 MKYNNTMIPGAHCTFKLNWAT-GGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRS 204
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
YPS AK+++D +TG ++ YGFVRF E EQ A+ M G C RP+RI A+ K
Sbjct: 205 IYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSR 264
Query: 257 VS-----------ASYQNSQVAQ--SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLV 303
S S N Q Q DP NTTVFVG L S ++++ L+ F +G+++
Sbjct: 265 ASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRIL 324
Query: 304 HVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
++KIP GK CGFVQ++++S AE+A+ + G +G +IRL+WG
Sbjct: 325 NIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGH 368
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 85/214 (39%), Gaps = 31/214 (14%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
++++GDL +++ L F + K+I + TG YGF+ F S + L
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 142 TFNGTPMPNGEQNFRL----NWASFGAGEKRDDTP------------------DHTIFVG 179
G + + AS A P + T+FVG
Sbjct: 243 HMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVG 302
Query: 180 DLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239
LA+++++ LQ F+ P + + I KG GFV++ ++S +A+ M G
Sbjct: 303 GLASNLSEKDLQVCFQ---PFGRILNIKIPF----GKGCGFVQYSEKSAAEKAINTMQGA 355
Query: 240 FCSTRPMRIGPATNKKTVSASYQN-SQVAQSDDD 272
T +R+ N VSA Q+ SQV+ D
Sbjct: 356 LVGTSHIRLAWGHNTLPVSALSQSQSQVSDEGFD 389
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 169 bits (427), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 111/331 (33%), Positives = 165/331 (49%), Gaps = 67/331 (20%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEV-VAVKVIRNKQTGQ----------IEGYGFIEFIS 132
L++GDL D+ + +A GE + V+++ N +GY F++F S
Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPS 115
Query: 133 RAGAERVLQTFNGTPMPNG-EQNFRLNWASFGAGEKRDDTP------DHTIFVGDLAADV 185
A L NG +PN + +LNWA+ + + +IFVGDLA +V
Sbjct: 116 STHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNV 174
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
T+ L E F RY ST AK+V D++TG +KGYGFV+F + EQ A++EM GVF + R
Sbjct: 175 TESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRA 234
Query: 246 MRIGPAT------------NKKTVSASYQN----------SQVAQSDD------------ 271
+++GP + N+ + S + +N S ++ ++
Sbjct: 235 IKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQF 294
Query: 272 --------------DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQ 317
DPNNTTVF+G L S+VT++ LR F +G +V+VKIP GK CGFVQ
Sbjct: 295 IYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQ 354
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348
+ DR AE A+ + G + +RLSWGRS
Sbjct: 355 YVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T++IG L + E L F G +V VK+ K G F++++ R AE +
Sbjct: 314 TVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCG------FVQYVDRLSAEAAIAG 367
Query: 143 FNGTPMPNGEQNFRLNW 159
G P+ N RL+W
Sbjct: 368 MQGFPIANSR--VRLSW 382
>sp|Q9NX07|TSAP1_HUMAN tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens
GN=TRNAU1AP PE=1 SV=1
Length = 287
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 125/188 (66%), Gaps = 7/188 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKTVS 258
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 180
Query: 259 ASYQNSQV 266
+ SQ+
Sbjct: 181 KPVEYSQM 188
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPM-RIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLR 293
++NG +P+ PA K A+Y Q D+ P ++FVG+L V D L
Sbjct: 64 KING-----KPLPGATPAKRFKLNYATYGK----QPDNSP-EYSLFVGDLTPDVDDGMLY 113
Query: 294 ELFSQY------GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQNIRLS 344
E F + G++V + K GFV+F D + AL G LG + +RLS
Sbjct: 114 EFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 171
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 277 TVFVGNLDSIVTDEHLRELFSQYGQLV-HVKIPAGKRCG------FVQFADRSCAEEALR 329
++++G+L+ + + + F+ G+ V VKI + G FV+FAD + AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 330 MLNGTQLGG----QNIRL---SWGRSPSN 351
+NG L G + +L ++G+ P N
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQPDN 92
>sp|Q1RMJ7|TSAP1_BOVIN tRNA selenocysteine 1-associated protein 1 OS=Bos taurus
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 159 bits (401), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 124/188 (65%), Gaps = 7/188 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPATNKKTVS 258
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G ++P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKASRV 180
Query: 259 ASYQNSQV 266
+ SQ+
Sbjct: 181 KPVEYSQM 188
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPM-RIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLR 293
++NG +P+ PA K A+Y Q D+ P ++FVG+L V D L
Sbjct: 64 KING-----KPLPGATPAKRFKLNYATYGK----QPDNSP-EYSLFVGDLTPDVDDGMLY 113
Query: 294 ELFSQY------GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQNIRLS 344
E F + G++V + K GFV+F D + AL G LG + +RLS
Sbjct: 114 EFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLS 171
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 277 TVFVGNLDSIVTDEHLRELFSQYGQLV-HVKIPAGKRCG------FVQFADRSCAEEALR 329
++++G+L+ + + + F+ G+ V VKI + G FV+FAD + AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 330 MLNGTQLGG----QNIRL---SWGRSPSN 351
+NG L G + +L ++G+ P N
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQPDN 92
>sp|Q9QZI7|TSAP1_RAT tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus
GN=Trnau1ap PE=1 SV=1
Length = 287
Score = 159 bits (401), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 124/188 (65%), Gaps = 7/188 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKTVS 258
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V +P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRV 180
Query: 259 ASYQNSQV 266
+ SQ+
Sbjct: 181 KPVEYSQM 188
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPM-RIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLR 293
++NG +P+ PA K A+Y Q D+ P ++FVG+L V D L
Sbjct: 64 KING-----KPLPGATPAKRFKLNYATYGK----QPDNSP-EYSLFVGDLTPDVDDGMLY 113
Query: 294 ELFSQY------GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQNIRLS 344
E F + G++V + K GFV+F D + AL G LG + +RLS
Sbjct: 114 EFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLS 171
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 277 TVFVGNLDSIVTDEHLRELFSQYGQLV-HVKIPAGKRCG------FVQFADRSCAEEALR 329
++++G+L+ + + + F+ G+ V VKI + G FV+FAD + AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 330 MLNGTQLGG----QNIRL---SWGRSPSN 351
+NG L G + +L ++G+ P N
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQPDN 92
>sp|Q5R462|TSAP1_PONAB tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 124/188 (65%), Gaps = 7/188 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+ ++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYVTYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKTVS 258
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 180
Query: 259 ASYQNSQV 266
+ SQ+
Sbjct: 181 KPVEYSQM 188
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 18/178 (10%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPM-RIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLR 293
++NG +P+ PA K +Y Q D+ P ++FVG+L V D L
Sbjct: 64 KING-----KPLPGATPAKRFKLNYVTYGK----QPDNSP-EYSLFVGDLTPDVDDGMLY 113
Query: 294 ELFSQY------GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQNIRLS 344
E F + G++V + K GFV+F D + AL G LG + +RLS
Sbjct: 114 EFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 171
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 277 TVFVGNLDSIVTDEHLRELFSQYGQLV-HVKIPAGKRCG------FVQFADRSCAEEALR 329
++++G+L+ + + + F+ G+ V VKI + G FV+FAD + AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 330 MLNGTQLGG----QNIRL---SWGRSPSN 351
+NG L G + +L ++G+ P N
Sbjct: 64 KINGKPLPGATPAKRFKLNYVTYGKQPDN 92
>sp|Q80VC6|TSAP1_MOUSE tRNA selenocysteine 1-associated protein 1 OS=Mus musculus
GN=Trnau1ap PE=1 SV=2
Length = 287
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 123/188 (65%), Gaps = 7/188 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKTVS 258
S +G KVV+D TG +KGYGFV+F DE EQ RA+TE G V +P+R+ A K +
Sbjct: 122 SCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRV 180
Query: 259 ASYQNSQV 266
+ SQ+
Sbjct: 181 KPVEYSQM 188
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 18/178 (10%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPM-RIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLR 293
++NG +P+ PA K A+Y Q D+ P ++FVG+L V D L
Sbjct: 64 KING-----KPLPGATPAKRFKLNYATYGK----QPDNSP-EYSLFVGDLTPDVDDGMLY 113
Query: 294 ELFSQY------GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQNIRLS 344
E F + G++V K GFV+F D + AL G LG + +RLS
Sbjct: 114 EFFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLS 171
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 277 TVFVGNLDSIVTDEHLRELFSQYGQLV-HVKIPAGKRCG------FVQFADRSCAEEALR 329
++++G+L+ + + + F+ G+ V VKI + G FV+FAD + AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 330 MLNGTQLGG----QNIRL---SWGRSPSN 351
+NG L G + +L ++G+ P N
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQPDN 92
>sp|Q4KM14|TSP1L_DANRE tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio
GN=trnau1apl PE=2 SV=1
Length = 316
Score = 138 bits (348), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 114/186 (61%), Gaps = 7/186 (3%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEV-VAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ +LW+GDL +MDE ++ F+ GE VK+I ++ TG GY F+E A +R
Sbjct: 5 MTSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRC 64
Query: 140 LQTFNGTPMP--NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
+Q NG +P N + F+LN+A++G ++ + P+ ++FVGDL ++V DY L + F +
Sbjct: 65 VQRLNGKLVPGSNPPRKFKLNYATYG--KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKK 122
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRPMRIGPATNKKT 256
+PS KGAKVV D G ++GYGFV+F DE+EQ +A+ E N +P+RI A NK
Sbjct: 123 FPSCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKGN 181
Query: 257 VSASYQ 262
+++Y
Sbjct: 182 KASTYH 187
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 20/189 (10%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + +++ F + G K++ R+TG + GY FV DE+ R +
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 235 EMNGVFCSTRPMRIGPATNK-KTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLR 293
+NG ++ P +N + +Y + + + +VFVG+L S V D L
Sbjct: 67 RLNG--------KLVPGSNPPRKFKLNY--ATYGKRPEPGPEFSVFVGDLTSEVDDYQLH 116
Query: 294 ELF-----SQYGQLVHVKIPAG--KRCGFVQFADRSCAEEALRML-NGTQLGGQNIRLSW 345
+ F S G V V P G + GFV+F+D + ++AL N + LGG+ IR+S
Sbjct: 117 QFFLKKFPSCKGAKV-VTDPYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISI 175
Query: 346 GRSPSNKQA 354
+ NK +
Sbjct: 176 AVNKGNKAS 184
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVH-VKIPAGKRCG------FVQFADRSCAEEAL 328
T++++G+LD + + +++ FS G+ VKI + G FV+ AD + + +
Sbjct: 6 TSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCV 65
Query: 329 RMLNGTQLGGQN 340
+ LNG + G N
Sbjct: 66 QRLNGKLVPGSN 77
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 156/315 (49%), Gaps = 20/315 (6%)
Query: 73 QQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFIS 132
+ GQP RTL++G+L + E + F+ G + K+I + + Y F+EF
Sbjct: 3 EDDGQP---RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYE 57
Query: 133 RAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQE 192
A L NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++
Sbjct: 58 HRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKS 115
Query: 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
F A + A+VV D TG++KGYGFV F ++ + A+ M G + R +R AT
Sbjct: 116 AF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT 174
Query: 253 NKKTVSASYQNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305
K S Q + Q + P N TV+ G + S +TD+ +R+ FS +GQ++ +
Sbjct: 175 RKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEI 234
Query: 306 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQA--QPDPNQWN 362
++ K FV+F+ A A+ +NGT + G ++ WG+ SP + Q D +QW
Sbjct: 235 RVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWG 294
Query: 363 --AGYYGYAQGYENY 375
+ YG Q Y Y
Sbjct: 295 QWSQVYGNPQQYGQY 309
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 27/189 (14%)
Query: 69 AVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFI 128
P Q+ +++GDL + + + FA G++ +V+++ TG+ +GYGF+
Sbjct: 84 TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFV 143
Query: 129 EFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS------------------FGAGEKRDD 170
F ++ AE + G + G + R NWA+ F +
Sbjct: 144 SFYNKLDAENAIVHMGGQWL--GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSS 201
Query: 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230
+ T++ G +A+ +TD ++++TF P + +++ KGY FVRF
Sbjct: 202 PKNCTVYCGGIASGLTDQLMRQTFS---PFGQ----IMEIRVFPEKGYSFVRFSTHESAA 254
Query: 231 RAMTEMNGV 239
A+ +NG
Sbjct: 255 HAIVSVNGT 263
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 157/330 (47%), Gaps = 33/330 (10%)
Query: 73 QQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNK--------------- 117
+ GQP RTL++G+L + E + F+ G + K+I +
Sbjct: 3 EDDGQP---RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVL 59
Query: 118 QTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIF 177
Q + Y F+EF A L NG + E ++NWA+ + +K+D + +F
Sbjct: 60 QHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVF 117
Query: 178 VGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237
VGDL+ ++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M
Sbjct: 118 VGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 238 GVFCSTRPMRIGPATNKKTVSASYQNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDE 290
G + R +R AT K S Q + Q + P N TV+ G + S +TD+
Sbjct: 177 GQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 236
Query: 291 HLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SP 349
+R+ FS +GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP
Sbjct: 237 LMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 296
Query: 350 SNKQA--QPDPNQWN--AGYYGYAQGYENY 375
+ Q D +QW + YG Q Y Y
Sbjct: 297 DMTKNFQQVDYSQWGQWSQVYGNPQQYGQY 326
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 27/189 (14%)
Query: 69 AVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFI 128
P Q+ +++GDL + + + FA G++ +V+++ TG+ +GYGF+
Sbjct: 101 TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFV 160
Query: 129 EFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS------------------FGAGEKRDD 170
F ++ AE + G + G + R NWA+ F +
Sbjct: 161 SFYNKLDAENAIVHMGGQWL--GGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSS 218
Query: 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230
+ T++ G +A+ +TD ++++TF S G + I KGY FVRF
Sbjct: 219 PKNCTVYCGGIASGLTDQLMRQTF-----SPFGQIMEIRVFP--EKGYSFVRFSTHESAA 271
Query: 231 RAMTEMNGV 239
A+ +NG
Sbjct: 272 HAIVSVNGT 280
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 154/317 (48%), Gaps = 34/317 (10%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DH-TIFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNKKTVSASYQNSQVAQ-------SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLV 303
AT K S S Q S PNN TV+ G + S +T++ +R+ FS +GQ++
Sbjct: 182 ATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIM 241
Query: 304 HVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR------SPSNKQAQ-- 355
+++ K FV+F+ A A+ +NGT + G ++ WG+ +P +Q Q
Sbjct: 242 EIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIG 301
Query: 356 --PDPNQWNAGYYGYAQ 370
P QW +YG AQ
Sbjct: 302 YPPTYGQWGQ-WYGNAQ 317
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 91/184 (49%), Gaps = 10/184 (5%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 2 EDEMPK-TLYVGNLSRDVTEALILQLFSQIGP-CKNCKMIMD--TAGNDPYCFVEFHEHR 57
Query: 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIV 287
A+ MNG + +++ AT + +S V + ++ VFVG+L +
Sbjct: 58 HAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEI 117
Query: 288 TDEHLRELFSQYGQLVHVKIP------AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 341
T E ++ F+ +G++ ++ K GFV F ++ AE A++ + G LGG+ I
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 342 RLSW 345
R +W
Sbjct: 178 RTNW 181
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 325
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAA 60
Query: 326 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 154/317 (48%), Gaps = 34/317 (10%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DH-TIFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNKKTVSASYQNSQVAQSDDD-------PNNTTVFVGNLDSIVTDEHLRELFSQYGQLV 303
AT K S S Q D P+N TV+ G + S +T++ +R+ FS +GQ++
Sbjct: 182 ATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIM 241
Query: 304 HVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR------SPSNKQAQ-- 355
+++ K FV+F A A+ +NGT + G ++ WG+ +P +Q Q
Sbjct: 242 EIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIG 301
Query: 356 -PDP-NQWNAGYYGYAQ 370
P P QW +YG AQ
Sbjct: 302 YPQPYGQWGQ-WYGNAQ 317
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 91/184 (49%), Gaps = 10/184 (5%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 2 EDEMPK-TLYVGNLSRDVTEALILQLFSQIGP-CKNCKMIMD--TAGNDPYCFVEFHEHR 57
Query: 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIV 287
A+ MNG + +++ AT + +S V + ++ VFVG+L +
Sbjct: 58 HAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEI 117
Query: 288 TDEHLRELFSQYGQLVHVKIP------AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 341
T E ++ F+ +G++ ++ K GFV F ++ AE A++ + G LGG+ I
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 342 RLSW 345
R +W
Sbjct: 178 RTNW 181
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 325
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAA 60
Query: 326 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 353
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>sp|Q503H1|TSAP1_DANRE tRNA selenocysteine 1-associated protein 1 OS=Danio rerio
GN=trnau1ap PE=2 SV=1
Length = 314
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 110/203 (54%), Gaps = 8/203 (3%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ +LW+G+L+ +MDE ++ FA GE VV +++IR+K TG+ GYGF+E ER
Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERC 60
Query: 140 LQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
L+ NG P+P + F+L+ +++G K+ ++ ++FV DL DV D ML E F
Sbjct: 61 LRKVNGKPLPGATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDDGMLYEFFHYH 117
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPATNKKT 256
+ S K+V+D G +K GFV F E EQ RA+ ++ G + +R+ A+++
Sbjct: 118 FSSCCSGKIVLDA-NGHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSRVN 176
Query: 257 VSASYQNSQVAQSDDDPNNTTVF 279
+Q+ Q D N +
Sbjct: 177 KKKESSENQIWQYHSDSKNASFI 199
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 17/194 (8%)
Query: 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233
+++++G+L + + + F + +++ D++TG+ GYGFV D++ R +
Sbjct: 2 NSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCL 61
Query: 234 TEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLR 293
++NG +P+ + +S S Q S ++FV +L V D L
Sbjct: 62 RKVNG-----KPLPGATPPKRFKLSRSNYGKQGESS-----TFSLFVSDLTPDVDDGMLY 111
Query: 294 ELFSQY------GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQNIRLSWG 346
E F + G++V K CGFV F + AL L G T LG + +RLS
Sbjct: 112 EFFHYHFSSCCSGKIVLDANGHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLA 171
Query: 347 RSPSNKQAQPDPNQ 360
S NK+ + NQ
Sbjct: 172 SSRVNKKKESSENQ 185
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 144/301 (47%), Gaps = 27/301 (8%)
Query: 53 PAMWATQAAAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVK 112
P + A ++A+P A A P +L++G+L + E L F+ G+V +++
Sbjct: 30 PEVTAVESASPSATPSANQPHSA-------SLYVGELDPSVTEAMLYELFSSIGQVASIR 82
Query: 113 VIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP 172
V R+ T + GY ++ + + A ER L+ N T + + R+ W+ ++ T
Sbjct: 83 VCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRK--TG 138
Query: 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232
+F+ +L A + + L +TF A + + KV D G +KGYGFV + A
Sbjct: 139 QGNVFIKNLDAAIDNKALHDTF-AAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNA 196
Query: 233 MTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHL 292
+ +NG+ + + + +G +KK + ++ + N T V++ N+D VTDE
Sbjct: 197 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA-------NFTNVYIKNIDQEVTDEEF 249
Query: 293 RELFSQYGQLVHVKIP-----AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
R++F ++G++ + + GFV F+ A+ A+ +N ++ GQ +L GR
Sbjct: 250 RKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQ--KLYVGR 307
Query: 348 S 348
+
Sbjct: 308 A 308
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 111/236 (47%), Gaps = 22/236 (9%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A ++
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--------TIFVGDLAADVTDYMLQETFR 195
NG + N ++ F + S K+D +++ ++ +VTD ++ F
Sbjct: 201 NGMLL-NDKKVFVGHHIS-----KKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFE 254
Query: 196 ARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK- 254
++ A + D+ G+++G+GFV F A+ EMN + + +G A K
Sbjct: 255 -KFGEITSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKH 312
Query: 255 ---KTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 307
+ + Y+ +++ ++ ++V NL V DE LRELFS +G + K+
Sbjct: 313 EREEELRKQYEAARLEKASK-YQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKV 367
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/238 (19%), Positives = 87/238 (36%), Gaps = 60/238 (25%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I ++ + + F GE+ + + R+ Q G+ G+GF+ F + A+ +
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHDSAQAAVDEM 293
Query: 144 NGTPMP-------------NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYML 190
N + E+ R + + EK ++V +L DV D L
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEA-ARLEKASKYQGVNLYVKNLTDDVDDEKL 352
Query: 191 QETFRARYPSTKGAKVVIDRLT-------------------------------------- 212
+E F + + + AKV+ D +T
Sbjct: 353 RELF-SPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKK 411
Query: 213 ------GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNS 264
G++KG+GFV F E +A+TEMN + +P+ + A K + + S
Sbjct: 412 TEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEAS 469
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 130/264 (49%), Gaps = 18/264 (6%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F+ G V +++V R+ T + GY ++ + + A E+ L+
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + + R+ W+ ++ T IF+ +L A + + L +TF A + +
Sbjct: 121 LNYTLIKG--RPCRIMWSQRDPALRK--TGAGNIFIKNLDAAIDNKALHDTF-AAFGNIL 175
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KV D G +KGYGFV + + +A+ +NG+ + + + +G KK + ++
Sbjct: 176 SCKVAQDE-HGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 234
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP-----AGKRCGFVQ 317
+ N T V+V N+++ VTDE RELF+++G++ + + GFV
Sbjct: 235 EMKA-------NFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVN 287
Query: 318 FADRSCAEEALRMLNGTQLGGQNI 341
F A +A+ LNG GQ++
Sbjct: 288 FTTHEAAAQAVDELNGKDFRGQDL 311
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 108/241 (44%), Gaps = 30/241 (12%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ FA G +++ KV +++ G +GYGF+ + + A + ++
Sbjct: 149 NIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKH 207
Query: 143 FNG-------------TPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
NG P + + F A+F ++V ++ +VTD
Sbjct: 208 VNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-----------TNVYVKNINNEVTDEE 256
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
+E F A++ + + D+ G+++G+GFV F +A+ E+NG + + +G
Sbjct: 257 FRELF-AKFGEVTSSSLARDQ-EGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVG 314
Query: 250 PATNKKTVSASYQNSQVAQSDDDPNN---TTVFVGNLDSIVTDEHLRELFSQYGQLVHVK 306
A K + S A + N +++ NL V D+ LR +FS+YG + K
Sbjct: 315 RAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAK 374
Query: 307 I 307
+
Sbjct: 375 V 375
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 68/241 (28%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+++ ++ + + FA GEV + + R+ Q G+ G+GF+ F + A + +
Sbjct: 242 NVYVKNINNEVTDEEFRELFAKFGEVTSSSLARD-QEGKSRGFGFVNFTTHEAAAQAVDE 300
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGDLAA 183
NG ++FR G +K+ + + +++ +L
Sbjct: 301 LNG-------KDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGD 353
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLT------------------------------- 212
DV D L+ F P T AKV+ D L
Sbjct: 354 DVDDDKLRAMFSEYGPITS-AKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKK 412
Query: 213 ---------GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQN 263
G++KG+GFV F + + +A+TEMN +P+ + A K + +
Sbjct: 413 TEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEA 472
Query: 264 S 264
S
Sbjct: 473 S 473
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 152/309 (49%), Gaps = 24/309 (7%)
Query: 58 TQAAAPQAAGVAVPPQQQGQPGEIRT------LWIGDLQYWMDETYLNTCFAHTGEVVAV 111
T+ A Q +++ +Q+G E ++ L++GDL + E +L F+ G V ++
Sbjct: 5 TEKTAEQLENLSLQDKQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSI 64
Query: 112 KVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT 171
+V R+ T GY ++ F A+ ++ N TP+ + R+ W+ ++
Sbjct: 65 RVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKG--KLCRIMWSQRDPSLRKKGA 122
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
+ IF+ +L D+ + L +TF + + +KV D TG++KG+G+V F ++
Sbjct: 123 GN--IFIKNLHPDIDNKALYDTFSV-FGNILSSKVATDE-TGKSKGFGYVHFEEDESASE 178
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291
A+ +NG+ + + + +GP +KK + ++ + N T V++ N+++ TD+
Sbjct: 179 AIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKA-------NFTNVYIKNINTETTDKE 231
Query: 292 LRELFSQYGQ---LVHVKIPAG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346
EL +++G+ +V + P G K GFV F + A + + LN T+ GQ + ++
Sbjct: 232 FEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRA 291
Query: 347 RSPSNKQAQ 355
+ +Q +
Sbjct: 292 QKKYERQQE 300
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 131/285 (45%), Gaps = 19/285 (6%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV + +TG+ +G+G++ F A +
Sbjct: 125 IFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDAL 183
Query: 144 NGTPMPNGEQNF---RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
NG + NG++ + L+ + + +++ ++ + TD +E A++
Sbjct: 184 NGMLL-NGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELV-AKFGK 241
Query: 201 TKGAKVVIDRL-TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK----K 255
T VV++R G KG+GFV F + + ++ + E+N +P+ + A K +
Sbjct: 242 TDS--VVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQ 299
Query: 256 TVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----G 310
+ Y+ +++ + +F+ NLD + D+ L E F+ YG + K+
Sbjct: 300 ELKKQYEATRMEKMAK-YQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKS 358
Query: 311 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
K GFV F+ A +A+ N + G+ + ++ + +++Q
Sbjct: 359 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 403
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 22/198 (11%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I ++ + A G+ +V V+ G+ +G+GF+ F++ A + ++
Sbjct: 218 VYIKNINTETTDKEFEELVAKFGKTDSV-VLERTPEGENKGFGFVNFVNHEDAVKCVEEL 276
Query: 144 NGTPMP-------------NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYML 190
N T +Q + + + EK +F+ +L + D L
Sbjct: 277 NNTEFKGQPLYVNRAQKKYERQQELKKQYEA-TRMEKMAKYQGINLFIKNLDDSIDDKKL 335
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+E F A Y + AKV+ G++KG+GFV F E +A+TE N + +P+ +
Sbjct: 336 EEEF-APYGTITSAKVMTTE-NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 393
Query: 251 ATNKKTVSASYQNSQVAQ 268
A K + SQ+AQ
Sbjct: 394 AQRKDV-----RRSQLAQ 406
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 152/327 (46%), Gaps = 28/327 (8%)
Query: 53 PAMWATQAAAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVK 112
P + A ++A+P A P +L++G+L + E L F+ G+V +++
Sbjct: 30 PEVTAVESASPSTTPSASQPHSA-------SLYVGELDPSVTEAMLYELFSSIGQVASIR 82
Query: 113 VIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP 172
V R+ T + GY ++ + + A ER L+ N T + + R+ W+ ++ T
Sbjct: 83 VCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRK--TG 138
Query: 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232
+F+ +L A + + L +TF A + + KV D G +KGYGFV + A
Sbjct: 139 QGNVFIKNLDAAIDNKALHDTF-AAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNA 196
Query: 233 MTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHL 292
+ +NG+ + + + +G +KK + ++ + N T V++ N+D VTDE
Sbjct: 197 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA-------NFTNVYIKNIDQEVTDEEF 249
Query: 293 RELFSQYGQLVHVKIP-----AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347
R++F ++G++ + + GFV F+ A+ A+ +N ++ GQ +L GR
Sbjct: 250 RKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQ--KLYVGR 307
Query: 348 SPSNKQAQPD-PNQWNAGYYGYAQGYE 373
+ + + + Q+ A A Y+
Sbjct: 308 AQKKHEREEELRKQYEAARLEKASKYQ 334
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 110/230 (47%), Gaps = 10/230 (4%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A ++
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--TIFVGDLAADVTDYMLQETFRARYPST 201
NG + + + + + K ++ + +++ ++ +VTD ++ F ++
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFE-KFGEI 259
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK----KTV 257
A + D+ G+++G+GFV F A+ EMN + + +G A K + +
Sbjct: 260 TSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEEL 318
Query: 258 SASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 307
Y+ +++ ++ ++V NL V DE LRELFS +G + K+
Sbjct: 319 RKQYEAARLEKASK-YQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKV 367
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/240 (19%), Positives = 87/240 (36%), Gaps = 62/240 (25%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I ++ + + F GE+ + + R+ Q G+ G+GF+ F + A+ +
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHDSAQAAVDEM 293
Query: 144 NGTPMP-------------NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYML 190
N + E+ R + + EK ++V +L DV D L
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEA-ARLEKASKYQGVNLYVKNLTDDVDDEKL 352
Query: 191 QETFRARYPSTKGAKVVIDRLT-------------------------------------- 212
+E F + + + AKV+ D +T
Sbjct: 353 RELF-SPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEP 411
Query: 213 --------GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNS 264
G++KG+GFV F E +A+TEMN + +P+ + A K + + S
Sbjct: 412 KKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEAS 471
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 134/278 (48%), Gaps = 19/278 (6%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KVV D +KGY FV F + +A+ +MNG+ + R + +G ++K A
Sbjct: 127 SCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL- 183
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
T V++ N V DE L+ELFSQ+G+ + VK+ P GK GFV
Sbjct: 184 ------GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 237
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
+ A +A+ +NG ++ G+ I + + +QA+
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 91.7 bits (226), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 136/288 (47%), Gaps = 21/288 (7%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ ++ + GY F+ F ++ A++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAI 155
Query: 141 QTFNGTPMPNGE------QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETF 194
+ NG + + + ++ + A GA K +++ + +V D L+E F
Sbjct: 156 EKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN----VYIKNFGEEVDDESLKELF 211
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+++ T KV+ D G++KG+GFV + + +A+ EMNG S + + +G A K
Sbjct: 212 -SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
Query: 255 KTVSASYQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-- 309
A + Q+ Q +++ NLD + DE LR+ FS +G + K+
Sbjct: 270 VERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329
Query: 310 --GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAH 377
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 28/193 (14%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI-----GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSI 286
A+ MN +P+RI P+ K V VF+ NLD
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG------------------NVFIKNLDKS 109
Query: 287 VTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
+ ++ L + FS +G ++ K+ K FV F + A++A+ +NG L + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVF 169
Query: 343 LSWGRSPSNKQAQ 355
+ +S ++A+
Sbjct: 170 VGRFKSRKEREAE 182
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 30/203 (14%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
++ NG + +G+ F G +K+ + +++ +
Sbjct: 248 VEEMNGKEI-SGKIIF------VGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG
Sbjct: 301 LDDTIDDEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 241 CSTRPMRIGPATNKKTVSASYQN 263
++P+ + A K+ A N
Sbjct: 358 VGSKPLYVALAQRKEERKAHLTN 380
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 133/288 (46%), Gaps = 19/288 (6%)
Query: 59 QAAAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ 118
Q A P AG P P +L++G+L + E L F+ G V +++V R+
Sbjct: 43 QTADPDTAG-PTPSSAAPHPQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTI 101
Query: 119 TGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFV 178
T + GY ++ + S + E+ L+ N T + + R+ W+ ++ T +F+
Sbjct: 102 TRRSLGYAYVNYNSTSDGEKALEELNYTLIKG--RPCRIMWSQRDPALRK--TGQGNVFI 157
Query: 179 GDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
+L + + L +TF A + + KV D G +KGYGFV + + +A+ +N
Sbjct: 158 KNLDVAIDNKALHDTF-AAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHVNN 215
Query: 239 VFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQ 298
+ + + + +G KK + ++ + N T ++V N+ TDE R+LF++
Sbjct: 216 MLLNEKKVYVGYHIPKKDRQSKFEEMKA-------NFTNIYVKNISLEATDEEFRDLFAK 268
Query: 299 YGQLVHVKIP-----AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 341
YG + + + GFV F CA +A+ LNG + GQ++
Sbjct: 269 YGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDL 316
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 107/241 (44%), Gaps = 30/241 (12%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A + ++
Sbjct: 154 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKH 212
Query: 143 FNG-------------TPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
N P + + F A+F I+V +++ + TD
Sbjct: 213 VNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANF-----------TNIYVKNISLEATDEE 261
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
++ F A+Y + + D G+++G+GFV F +A+ E+NG + + +G
Sbjct: 262 FRDLF-AKYGDVTSSSLARDS-EGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVG 319
Query: 250 PATNKKTVSASYQNSQVAQSDDDPNN---TTVFVGNLDSIVTDEHLRELFSQYGQLVHVK 306
A K + S A + N +++ NL + D+ LR++FS+YG + K
Sbjct: 320 RAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSAK 379
Query: 307 I 307
+
Sbjct: 380 V 380
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 60/229 (26%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+++ ++ + FA G+V + + R+ + G+ G+GF+ F + A + ++
Sbjct: 247 NIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSE-GKSRGFGFVNFTTHECAAKAVEE 305
Query: 143 FNGTPM-------------PNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
NG E+ R ++ + EK + +++ +LA D+ D
Sbjct: 306 LNGKEFRGQDLYVGRAQKKHEREEELRKSYEA-ARLEKANKYQGVNLYIKNLADDIDDDK 364
Query: 190 LQETFRARYPSTKGAKVVIDRLT------------------------------------- 212
L++ F P T AKV+ D +T
Sbjct: 365 LRQMFSEYGPITS-AKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTE 423
Query: 213 -------GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
G++KG+GFV F + + +A+ EMN +P+ + A K
Sbjct: 424 KKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRK 472
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 138/271 (50%), Gaps = 20/271 (7%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL+ + E +L F+ G V +++V R+ T GY ++ F + ++
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N TP+ + R+ W+ ++ + + IF+ +L D+ + L +TF +
Sbjct: 99 LNYTPIKG--RLCRIMWSQRDPSLRKKGSGN--IFIKNLHPDIDNKALYDTFSV-FGDIL 153
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
+K+ D G++KG+GFV F +E A+ +NG+ + + + + P ++K +
Sbjct: 154 SSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKE-----R 207
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQ 317
+SQ+ ++ + T ++V N++S TDE +ELF+++G +V + K GFV
Sbjct: 208 DSQLEET--KAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVN 265
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348
+ A +A+ LN ++L G+ +L GR+
Sbjct: 266 YEKHEDAVKAVEALNDSELNGE--KLYVGRA 294
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 135/291 (46%), Gaps = 29/291 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L F+ G++++ K+ + + G+ +G+GF+ F A+ +
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDA 185
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHT------IFVGDLAADVTDYMLQETFRA 196
NG + NG++ + A + ++RD + T ++V ++ ++ TD QE F A
Sbjct: 186 LNGMLL-NGQEIY---VAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELF-A 240
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK-- 254
++ A + D G+ KG+GFV + + ++A+ +N + + +G A K
Sbjct: 241 KFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNE 299
Query: 255 -----KTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP- 308
K +Y+ ++A+ +FV NLD V DE L E F+ YG + K+
Sbjct: 300 RMHVLKKQYEAYRLEKMAKY----QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR 355
Query: 309 ----AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
K GFV F+ A +A+ N + G+ + ++ + +++Q
Sbjct: 356 TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 29/206 (14%)
Query: 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYG 219
A+ G+ + + +++VGDL V++ L + F + S +V D +T + GY
Sbjct: 24 AATGSESQSVENSSASLYVGDLEPSVSEAHLYDIF-SPIGSVSSIRVCRDAITKTSLGYA 82
Query: 220 FVRFGDESEQLRAMTEMN-----GVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPN 274
+V F D +A+ ++N G C + P+ KK
Sbjct: 83 YVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKK------------------G 124
Query: 275 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKRCGFVQFADRSCAEEALR 329
+ +F+ NL + ++ L + FS +G ++ KI K GFV F + A+EA+
Sbjct: 125 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAID 184
Query: 330 MLNGTQLGGQNIRLSWGRSPSNKQAQ 355
LNG L GQ I ++ S + +Q
Sbjct: 185 ALNGMLLNGQEIYVAPHLSRKERDSQ 210
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 24/200 (12%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
L++ ++ + FA G +V+ + ++ G+++G+GF+ + A + ++
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEA 278
Query: 143 FNGTPMPNGEQ---------NFRLN-----WASFGAGEKRDDTPDHTIFVGDLAADVTDY 188
N + + NGE+ N R++ + ++ EK +FV +L V D
Sbjct: 279 LNDSEL-NGEKLYVGRAQKKNERMHVLKKQYEAYRL-EKMAKYQGVNLFVKNLDDSVDDE 336
Query: 189 MLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
L+E F A Y + AKV+ G++KG+GFV F E +A+TE N + +P+ +
Sbjct: 337 KLEEEF-APYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
Query: 249 GPATNKKTVSASYQNSQVAQ 268
A K + SQ+AQ
Sbjct: 395 AIAQRKDV-----RRSQLAQ 409
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 136/283 (48%), Gaps = 29/283 (10%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
N G P+ R+ W+ ++ + IF+ +L + + L +TF A
Sbjct: 72 MNFDVIKGKPV-------RIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA- 121
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ + KVV D +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 258 SASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKR 312
A A++ + T V++ N + DE L+ELF ++G + VK+ K
Sbjct: 180 EAELG----ARAKE---FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG 232
Query: 313 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 133/287 (46%), Gaps = 25/287 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ AER ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 144 NGTPMPNGEQNF-------RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N + F + A GA K +++ + D+ D L+E F
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKELF-G 212
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
++ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A KK
Sbjct: 213 KFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKV 270
Query: 257 VSASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA--- 309
+ + Q D ++V NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG 330
Query: 310 -GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 28/193 (14%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI-----GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSI 286
A+ MN +P+RI P+ K V +F+ NLD
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG------------------NIFIKNLDKS 109
Query: 287 VTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
+ ++ L + FS +G ++ K+ K GFV F + AE A+ +NG L + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 343 LSWGRSPSNKQAQ 355
+ +S ++A+
Sbjct: 170 VGRFKSRKEREAE 182
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 30/203 (14%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
+ NG + NG+Q + G +K+ + ++V +
Sbjct: 248 VDEMNGKEL-NGKQIY------VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG
Sbjct: 301 LDDGIDDERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 241 CSTRPMRIGPATNKKTVSASYQN 263
+T+P+ + A K+ A N
Sbjct: 358 VATKPLYVALAQRKEERQAHLTN 380
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 136/283 (48%), Gaps = 29/283 (10%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
N G P+ R+ W+ ++ + IF+ +L + + L +TF A
Sbjct: 72 MNFDVIKGKPV-------RIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA- 121
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ + KVV D +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 258 SASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKR 312
A A++ + T V++ N + DE L+ELF ++G + VK+ K
Sbjct: 180 EAELG----ARAKE---FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG 232
Query: 313 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 133/287 (46%), Gaps = 25/287 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ AER ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 144 NGTPMPNGEQNF-------RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N + F + A GA K +++ + D+ D L+E F
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKELF-G 212
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
++ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A KK
Sbjct: 213 KFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKV 270
Query: 257 VSASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA--- 309
+ + Q D ++V NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG 330
Query: 310 -GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 28/193 (14%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI-----GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSI 286
A+ MN +P+RI P+ K V +F+ NLD
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG------------------NIFIKNLDKS 109
Query: 287 VTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
+ ++ L + FS +G ++ K+ K GFV F + AE A+ +NG L + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 343 LSWGRSPSNKQAQ 355
+ +S ++A+
Sbjct: 170 VGRFKSRKEREAE 182
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 18/197 (9%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF---------RLNWASFGAGEKRDDTPDH----TIFVGDLAADVT 186
+ NG + NG+Q + R + + D ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERQAHLTN 380
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 136/283 (48%), Gaps = 29/283 (10%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
N G P+ R+ W+ ++ + IF+ +L + + L +TF A
Sbjct: 72 MNFDVIKGKPV-------RIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA- 121
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ + KVV D +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 258 SASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKR 312
A A++ + T V++ N + DE L++LF ++G + VK+ K
Sbjct: 180 EAELG----ARAKE---FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Query: 313 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 133/287 (46%), Gaps = 25/287 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ AER ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 144 NGTPMPNGEQNF-------RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N + F + A GA K +++ + D+ D L++ F
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKDLF-G 212
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
++ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A KK
Sbjct: 213 KFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKV 270
Query: 257 VSASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA--- 309
+ + Q D ++V NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG 330
Query: 310 -GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 28/193 (14%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI-----GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSI 286
A+ MN +P+RI P+ K V +F+ NLD
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG------------------NIFIKNLDKS 109
Query: 287 VTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
+ ++ L + FS +G ++ K+ K GFV F + AE A+ +NG L + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 343 LSWGRSPSNKQAQ 355
+ +S ++A+
Sbjct: 170 VGRFKSRKEREAE 182
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 18/197 (9%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF---------RLNWASFGAGEKRDDTPDH----TIFVGDLAADVT 186
+ NG + NG+Q + R + + D ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERQAHLTN 380
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 136/283 (48%), Gaps = 29/283 (10%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
N G P+ R+ W+ ++ + IF+ +L + + L +TF A
Sbjct: 72 MNFDVIKGKPV-------RIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA- 121
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ + KVV D +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 258 SASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKR 312
A A++ + T V++ N + DE L++LF ++G + VK+ K
Sbjct: 180 EAELG----ARAKE---FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Query: 313 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 133/287 (46%), Gaps = 25/287 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ AER ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 144 NGTPMPNGEQNF-------RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N + F + A GA K +++ + D+ D L++ F
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKDLF-G 212
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
++ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A KK
Sbjct: 213 KFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKV 270
Query: 257 VSASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA--- 309
+ + Q D ++V NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG 330
Query: 310 -GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 28/193 (14%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI-----GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSI 286
A+ MN +P+RI P+ K V +F+ NLD
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG------------------NIFIKNLDKS 109
Query: 287 VTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
+ ++ L + FS +G ++ K+ K GFV F + AE A+ +NG L + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 343 LSWGRSPSNKQAQ 355
+ +S ++A+
Sbjct: 170 VGRFKSRKEREAE 182
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 18/197 (9%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF---------RLNWASFGAGEKRDDTPDH----TIFVGDLAADVT 186
+ NG + NG+Q + R + + D ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERQAHLTN 380
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 128/264 (48%), Gaps = 18/264 (6%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L ++E L F+ G+V +++V R+ + + GY ++ + E+ ++
Sbjct: 68 SLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEE 127
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N TP+ + R+ W+ +R + D IF+ +L + + L +TF A +
Sbjct: 128 LNYTPVEG--RPCRIMWSQRDPSARR--SGDGNIFIKNLHPAIDNKALHDTFSA-FGKIL 182
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KV D L G++K +GFV + E A+ +NG+ + R + +G +KK + +
Sbjct: 183 SVKVATDDL-GQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLE 241
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP-----AGKRCGFVQ 317
+ N T ++V N+D T++ ELF+ +G++ + + K GFV
Sbjct: 242 EMKA-------NYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVN 294
Query: 318 FADRSCAEEALRMLNGTQLGGQNI 341
F + A +A+ LN ++ GQ I
Sbjct: 295 FEEHEAAAKAVEELNDKEINGQKI 318
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 124/270 (45%), Gaps = 20/270 (7%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ F+ G++++VKV + GQ + +GF+ + + A+ +++
Sbjct: 156 NIFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIES 214
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--TIFVGDLAADVTDYMLQETFRARYPS 200
NG + + E + + K ++ + I+V ++ T+ +E F P
Sbjct: 215 VNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFA---PF 271
Query: 201 TKGAKVVIDR-LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSA 259
K + +++ G++KG+GFV F + +A+ E+N + + + +G A K+ +
Sbjct: 272 GKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTE 331
Query: 260 SYQNSQVAQSDDDPNN---TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR- 312
+ A + + +FV NLD + E L E F +G + K+ AGK
Sbjct: 332 ELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSK 391
Query: 313 -CGFVQF-----ADRSCAEEALRMLNGTQL 336
GFV F A ++ E RM+NG L
Sbjct: 392 GFGFVCFSTPEEATKAITEMNQRMVNGKPL 421
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 87/191 (45%), Gaps = 29/191 (15%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+++ ++ E FA G++ ++ + ++ + G+ +G+GF+ F A + ++
Sbjct: 249 NIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAE-GKSKGFGFVNFEEHEAAAKAVEE 307
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGDLAA 183
N + NG++ + G +K+ + + +FV +L
Sbjct: 308 LNDKEI-NGQKIY------VGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDE 360
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
+ L+E F+ + + +KV++D G++KG+GFV F E +A+TEMN +
Sbjct: 361 QIDSEKLEEEFKP-FGTITSSKVMVDD-AGKSKGFGFVCFSTPEEATKAITEMNQRMVNG 418
Query: 244 RPMRIGPATNK 254
+P+ + A K
Sbjct: 419 KPLYVALAQRK 429
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 130/259 (50%), Gaps = 20/259 (7%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + + ++ L F G VV V+V R+ T + GYG++ F + A R +Q
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N P+ + R+ ++ +R + IF+ +L + L +TF + + +
Sbjct: 97 LNYIPLYG--KPIRVMYSHRDPSVRRSGAGN--IFIKNLDESIDHKALHDTF-SSFGNIV 151
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KV +D +G++KGYGFV++ +E +A+ ++NG+ + + + +GP ++ ++
Sbjct: 152 SCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTAN 210
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL---VHVKIPAGKR--CGFVQ 317
++ T V+V NL TD+ L+ F +YG++ V +K GK GFV
Sbjct: 211 KTKF---------TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVN 261
Query: 318 FADRSCAEEALRMLNGTQL 336
F + A A+ LNG +
Sbjct: 262 FENADDAARAVESLNGHKF 280
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 142/284 (50%), Gaps = 19/284 (6%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ F+ G +V+ KV + +GQ +GYGF+++ + A++ ++
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHT----IFVGDLAADVTDYMLQETFRARYP 199
NG + N +Q + F ++RD T + T ++V +LA TD L+ F Y
Sbjct: 185 NGMLL-NDKQVY---VGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAF-GEYG 239
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSA 259
A V+ D G++KG+GFV F + + RA+ +NG + +G A K
Sbjct: 240 KITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERET 298
Query: 260 SYQ---NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAG--K 311
+ + ++ D ++ ++V NLD ++DE L+E+FS +G + K+ P G K
Sbjct: 299 ELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSK 358
Query: 312 RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
GFV FA A EA+ L+G + + + ++ + +++ +
Sbjct: 359 GSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVR 402
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 90/198 (45%), Gaps = 19/198 (9%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ +L + L F G++ + V+++ + G+ +G+GF+ F + A R +++
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275
Query: 144 NGTPMPNGE-------------QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYML 190
NG + E R+ + E D ++V +L ++D L
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQ-NLKEAADKFQSSNLYVKNLDPSISDEKL 334
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+E F + + + +KV+ D G +KG GFV F E AM++++G ++P+ +
Sbjct: 335 KEIF-SPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAI 392
Query: 251 ATNK--KTVSASYQNSQV 266
A K + V Q SQV
Sbjct: 393 AQRKEDRRVRLQAQFSQV 410
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 110/239 (46%), Gaps = 70/239 (29%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ----------------------- 118
RTLW+GDL DE + ++ + V VK+IR K+
Sbjct: 34 RTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKNLLIPCSSTSSSNNNTSEENAEN 93
Query: 119 -------TGQIE-----------------------GYGFIEFISRAGAERVLQTFNGTPM 148
T Q++ GY F+EF ++ A+ L + N TP+
Sbjct: 94 QQSASNSTDQLDNSQMININGISFIDPSTTQLHHAGYCFVEFETQKDAKFAL-SLNATPL 152
Query: 149 PNG-------------EQNFRLNWASFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQET 193
PN ++ FRLNWAS GA + TP+ ++FVGDL+ T+ L
Sbjct: 153 PNFYSPTTNSQTNPTFKRTFRLNWAS-GATLQSSIPSTPEFSLFVGDLSPTATEADLLSL 211
Query: 194 FRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
F+ R+ S K +V+ D LTG ++ +GFVRFGDE E+ RA+ EM+G + R +R+ AT
Sbjct: 212 FQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYAT 270
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Query: 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALR 329
+ DP NTTVFVG L T+ LR LF +G +++V+IP GK CGFV+F R AE +++
Sbjct: 354 NTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQ 413
Query: 330 MLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGYAQGYE 373
L G +GG IRLSWGR PS+ A+ + A Y + G
Sbjct: 414 GLQGFIVGGSPIRLSWGR-PSSSNAKTNSTIMGASQYMSSNGLR 456
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 217 GYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN-------KKTVSASYQNSQVAQS 269
GY FV F + + A++ + + P P TN K+T ++ + QS
Sbjct: 129 GYCFVEFETQKDAKFALS----LNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQS 184
Query: 270 DDDPN-NTTVFVGNLDSIVTDEHLRELF-SQYGQLVHVKI-----PAGKRC-GFVQFADR 321
++FVG+L T+ L LF +++ + V++ RC GFV+F D
Sbjct: 185 SIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDE 244
Query: 322 SCAEEALRMLNGTQLGGQNIRLSWG 346
AL ++G G+ +R+++
Sbjct: 245 DERRRALIEMSGKWFQGRALRVAYA 269
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 136/283 (48%), Gaps = 29/283 (10%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
N G P+ R+ W+ ++ + IF+ +L + + L +TF A
Sbjct: 72 MNFDVIKGRPV-------RIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA- 121
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ + KVV D +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKER 179
Query: 258 SASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKR 312
A A++ + T V++ N + DE L+E+F +YG + VK+ K
Sbjct: 180 EAELG----ARAKE---FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKG 232
Query: 313 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
GFV F A++A+ +NG + G+++ + + +Q +
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTE 275
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 130/287 (45%), Gaps = 25/287 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ AER +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIDKM 158
Query: 144 NGTPMPNGEQNF-------RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N + F + A GA K +++ + D+ D L+E F
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTN----VYIKNFGDDMNDERLKEMF-G 212
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
+Y KV+ D G++KG+GFV F + +A+ EMNG + + M +G A KK
Sbjct: 213 KYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRA-QKKV 270
Query: 257 VSASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA--- 309
+ + Q D ++V NLD + DE LR+ F +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGG 330
Query: 310 -GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 28/193 (14%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI-----GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSI 286
A+ MN RP+RI P+ K V +F+ NLD
Sbjct: 68 ALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG------------------NIFIKNLDKS 109
Query: 287 VTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
+ ++ L + FS +G ++ K+ K GFV F + AE A+ +NG L + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVF 169
Query: 343 LSWGRSPSNKQAQ 355
+ +S ++A+
Sbjct: 170 VGRFKSRKEREAE 182
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 18/197 (9%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + M++ L F G ++VKV+ + G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF---------RLNWASFGAGEKRDDTPDH----TIFVGDLAADVT 186
+ NG M NG+ F R + + D ++V +L +
Sbjct: 248 VDEMNGKDM-NGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEFLP-FGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERQAHLTN 380
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 135/283 (47%), Gaps = 29/283 (10%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
N G P+ R+ W+ ++ + IF+ +L + + L +TF A
Sbjct: 72 MNFDVIKGKPV-------RIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA- 121
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ + KVV D +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 258 SASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKR 312
A A++ + T V++ N + DE L++LF ++G + VK+ K
Sbjct: 180 EAELG----ARAKE---FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Query: 313 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 133/287 (46%), Gaps = 25/287 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ AER ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 144 NGTPMPNGEQNF-------RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N + F + A GA K +++ + D+ D L++ F
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKDLF-G 212
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
++ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A KK
Sbjct: 213 KFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKV 270
Query: 257 VSASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA--- 309
+ + Q D ++V NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG 330
Query: 310 -GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 28/193 (14%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL D T+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDATEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI-----GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSI 286
A+ MN +P+RI P+ K V +F+ NLD
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG------------------NIFIKNLDKS 109
Query: 287 VTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
+ ++ L + FS +G ++ K+ K GFV F + AE A+ +NG L + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 343 LSWGRSPSNKQAQ 355
+ +S ++A+
Sbjct: 170 VGRFKSRKEREAE 182
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 18/197 (9%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF---------RLNWASFGAGEKRDDTPDH----TIFVGDLAADVT 186
+ NG + NG+Q + R + + D ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKKTVSASYQN 263
+ A K+ A N
Sbjct: 364 YVALAQRKEERQAHLTN 380
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 132/271 (48%), Gaps = 20/271 (7%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F+ G+V +++V R+ T + GY ++ + + A ER L+
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + + R+ W+ ++ T +F+ +L + + + L +TF A + +
Sbjct: 110 LNYTLIKG--KPCRIMWSQRDPALRK--TGQGNVFIKNLDSAIDNKALHDTF-AAFGNIL 164
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KV D G +KGYGFV + A+ +NG+ + + + +G +KK + ++
Sbjct: 165 SCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE 223
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP-----AGKRCGFVQ 317
+ N T V++ N+D VT+E RELF ++G++ + + GFV
Sbjct: 224 EMKA-------NFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVN 276
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348
F+ A+ A+ +N ++ Q +L GR+
Sbjct: 277 FSTHESAQAAVDEMNEKEIRTQ--KLYVGRA 305
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 111/237 (46%), Gaps = 22/237 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A ++
Sbjct: 138 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKH 196
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--------TIFVGDLAADVTDYMLQETF 194
NG + N ++ F + S K+D +++ ++ DVT+ +E F
Sbjct: 197 VNGMLL-NDKKVFVGHHIS-----KKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELF 250
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
++ A + D+ G+++G+GFV F A+ EMN T+ + +G A K
Sbjct: 251 E-KFGEITSATLSRDQ-EGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKK 308
Query: 255 ----KTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 307
+ + Y+ +++ ++ ++V NL V DE LRELF YG + K+
Sbjct: 309 HEREEELRKQYEAARLEKASK-YQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKV 364
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNS 264
G++KG+GFV F E +A+TEMN + +P+ + A K + + S
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEAS 481
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 144/306 (47%), Gaps = 25/306 (8%)
Query: 52 PPAMWATQAAAPQAAGVA----VPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGE 107
P A A +AP+ V P QP +L++G+L + E L F+ G+
Sbjct: 18 PEATNAAATSAPEVTAVESSSPTSPNNNNQPHSA-SLYVGELDPSVTEAMLYELFSSIGQ 76
Query: 108 VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEK 167
V +++V R+ T + GY ++ + + A ER L+ N T + + R+ W+ +
Sbjct: 77 VASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALR 134
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
+ T +F+ +L + + + L +TF A + + KV D G +KGYGFV +
Sbjct: 135 K--TGQGNVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDEF-GNSKGYGFVHYETAE 190
Query: 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIV 287
A+ +NG+ + + + +G +KK + + + N T +++ N+D V
Sbjct: 191 AANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKA-------NFTNIYIKNIDPDV 243
Query: 288 TDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
T+E R++F Q+G++ + P GK GFV ++ A+ A+ ++ ++ Q +
Sbjct: 244 TEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQ--K 301
Query: 343 LSWGRS 348
L GR+
Sbjct: 302 LYVGRA 307
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 109/231 (47%), Gaps = 10/231 (4%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A ++
Sbjct: 140 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKH 198
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--TIFVGDLAADVTDYMLQETFRARYPS 200
NG + + + + + K D+ + I++ ++ DVT+ ++ F ++
Sbjct: 199 VNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFE-QFGE 257
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK----KT 256
A + D G+++G+GFV + A+ EM+ T+ + +G A K +
Sbjct: 258 ITSATLSRDP-EGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEE 316
Query: 257 VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 307
+ Y+ +++ ++ ++V NL V DE LRELF YG + K+
Sbjct: 317 LRKQYEAARLEKASK-YQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKV 366
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/237 (18%), Positives = 83/237 (35%), Gaps = 68/237 (28%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I ++ + E F GE+ + + R+ + G+ G+GF+ + + A+ +
Sbjct: 233 NIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GKSRGFGFVNYSTHESAQAAVDE 291
Query: 143 FNGTPMPN-------------GEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
+ + E+ R + + EK ++V +L DV D
Sbjct: 292 MHDKEVKTQKLYVGRAQKKHEREEELRKQYEA-ARLEKASKYQGVNLYVKNLTDDVDDEK 350
Query: 190 LQETFRARYPSTKGAKVVID---------------------------------------- 209
L+E F Y + AKV+ D
Sbjct: 351 LRELF-GPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESD 409
Query: 210 ------------RLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+L G++KG+GFV F E +A+TEMN + +P+ + A K
Sbjct: 410 EEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 466
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 138/278 (49%), Gaps = 19/278 (6%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V+++++ R++ T + GY ++ F+ A A++ L T
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + ++ RL W+ A +R + +F+ +L + + L E F A +
Sbjct: 71 MNFDIIKG--KSIRLMWSQRDAYLRRSGIGN--VFIKNLDKSIDNKTLYEHFSA-FGKIL 125
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
+KV+ D +KGY FV F ++S RA+ EMNG + +G N+K A +
Sbjct: 126 SSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELR 183
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQ 317
+ T V++ N + DE L+++FS+YG+ + VK+ +GK GFV
Sbjct: 184 SKA-------SEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVS 236
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
F A++A+ +NG + GQ I + + +QA+
Sbjct: 237 FDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 137/295 (46%), Gaps = 28/295 (9%)
Query: 55 MWATQAAAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVI 114
MW+ + A + +G+ ++I +L +D L F+ G++++ KV+
Sbjct: 84 MWSQRDAYLRRSGIG-------------NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130
Query: 115 RNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTP 172
+ Q + GY F+ F +++ A+R ++ NG + G + F R E R
Sbjct: 131 SDDQGSK--GYAFVHFQNQSAADRAIEEMNG-KLLKGCKVFVGRFKNRKDREAELRSKAS 187
Query: 173 DHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
+ T +++ + D+ D L++ F ++Y T KV+ D +G++KG+GFV F +
Sbjct: 188 EFTNVYIKNFGGDMDDERLKDVF-SKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKK 245
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSASYQN--SQVAQSD-DDPNNTTVFVGNLDSIVT 288
A+ EMNG + + + +G A K A + Q+ + +++ NLD +
Sbjct: 246 AVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTID 305
Query: 289 DEHLRELFSQYGQLVHVKIP----AGKRCGFVQFADRSCAEEALRMLNGTQLGGQ 339
DE LR FS +G + VK+ K G + F+ A +A+ +NG LG +
Sbjct: 306 DEKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSK 360
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 92/200 (46%), Gaps = 30/200 (15%)
Query: 71 PPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEF 130
+ + + E ++I + MD+ L F+ G+ ++VKV+ + +G+ +G+GF+ F
Sbjct: 179 EAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSF 237
Query: 131 ISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHT--------------- 175
S A++ ++ NG + NG+ F G +K+ +
Sbjct: 238 DSHEAAKKAVEEMNGRDI-NGQLIF------VGRAQKKVERQAELKQMFEQLKRERIRGC 290
Query: 176 ----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
+++ +L + D L+ F + + S KV+ + G++KG+G + F + +
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRNEFSS-FGSISRVKVMQEE--GQSKGFGLICFSSPEDATK 347
Query: 232 AMTEMNGVFCSTRPMRIGPA 251
AMTEMNG ++P+ I A
Sbjct: 348 AMTEMNGRILGSKPLSIALA 367
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 132/271 (48%), Gaps = 20/271 (7%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F+ G+V +++V R+ T + GY ++ + + A ER L+
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + + R+ W+ ++ T +F+ +L + + + L +TF A + +
Sbjct: 115 LNYTLIKG--KPCRIMWSQRDPALRK--TGQGNVFIKNLDSAIDNKALHDTF-AAFGNIL 169
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KV D G +KGYGFV + A+ +NG+ + + + +G +KK + ++
Sbjct: 170 SCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE 228
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP-----AGKRCGFVQ 317
+ N T V++ NLDS + D+ R++F ++G++ + + GFV
Sbjct: 229 EMKA-------NFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVN 281
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348
F+ A+ A+ +N ++ Q +L GR+
Sbjct: 282 FSTHESAQAAVEEMNDKEIRSQ--KLYVGRA 310
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 111/237 (46%), Gaps = 22/237 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A ++
Sbjct: 143 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKH 201
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--------TIFVGDLAADVTDYMLQETF 194
NG + N ++ F + S K+D +++ +L +++ D ++ F
Sbjct: 202 VNGMLL-NDKKVFVGHHIS-----KKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMF 255
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
++ A + D+ G+++G+GFV F A+ EMN ++ + +G A K
Sbjct: 256 E-KFGEITSATLSRDQ-EGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKK 313
Query: 255 ----KTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 307
+ + Y+ +++ ++ ++V NL + DE LRELF YG + K+
Sbjct: 314 HEREEELRKQYEAARLEKASK-YQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKV 369
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/256 (17%), Positives = 88/256 (34%), Gaps = 82/256 (32%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D+ F GE+ + + R+ Q G+ G+GF+ F + A+ ++
Sbjct: 236 NVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHESAQAAVEE 294
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGDLAA 183
N ++ R G +K+ + + ++V +L
Sbjct: 295 MN-------DKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 184 DVTDYMLQETF------------------RARYPSTKGAKVVIDRLT------------- 212
D+ D L+E F R + P + G + D+
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKAEK 407
Query: 213 ------------------------GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
G++KG+GFV F E +A+TEMN + +P+ +
Sbjct: 408 AEEKPSESSEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 467
Query: 249 GPATNKKTVSASYQNS 264
A K + + S
Sbjct: 468 ALAQRKDVRRSQLEAS 483
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 133/271 (49%), Gaps = 20/271 (7%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F+ G+V +++V R+ T + GY ++ + + A ER L+
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + + R+ W+ ++ T +F+ +L A + + L +TF A + +
Sbjct: 109 LNYTLIKG--KPCRIMWSQRDPALRK--TGQGNVFIKNLDAAIDNKALHDTF-AAFGNIL 163
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KV D G +KGYGFV + A+ +NG+ + + + +G +KK + ++
Sbjct: 164 SCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE 222
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP-----AGKRCGFVQ 317
+ N T V++ NLD +++E R++F ++G++ + + GFV
Sbjct: 223 EMKA-------NFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVN 275
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348
++ A+ A+ +N ++ GQ +L GR+
Sbjct: 276 YSTHDSAQAAVDEMNDKEVKGQ--KLYVGRA 304
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 111/237 (46%), Gaps = 22/237 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A ++
Sbjct: 137 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKH 195
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--------TIFVGDLAADVTDYMLQETF 194
NG + N ++ F + S K+D +++ +L ++++ ++ F
Sbjct: 196 VNGMLL-NDKKVFVGHHIS-----KKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMF 249
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
++ A + D+ G+++G+GFV + A+ EMN + + +G A K
Sbjct: 250 E-KFGEITSATLSRDQ-EGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKK 307
Query: 255 ----KTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 307
+ + Y+ +++ ++ ++V NL + DE LRE+F+ YG + K+
Sbjct: 308 HEREEELRKQYEAARLEKASK-YQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKV 363
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/245 (19%), Positives = 87/245 (35%), Gaps = 66/245 (26%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L + E F GE+ + + R+ Q G+ G+GF+ + + A+ +
Sbjct: 230 NVYIKNLDQEISEEEFRQMFEKFGEITSATLSRD-QEGKSRGFGFVNYSTHDSAQAAVDE 288
Query: 143 FNGTPMP-------------NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
N + E+ R + + EK ++V +L D+ D
Sbjct: 289 MNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARL-EKASKYQGVNLYVKNLTDDIDDEK 347
Query: 190 LQETFRARYPSTKGAKVVID---------------------------------------- 209
L+E F A Y + AKV+ D
Sbjct: 348 LREMF-APYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDD 406
Query: 210 ----------RLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSA 259
++ G++KG+GFV F E +A+TEMN + +P+ + A K +
Sbjct: 407 QDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRS 466
Query: 260 SYQNS 264
+ S
Sbjct: 467 QLEAS 471
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 134/283 (47%), Gaps = 29/283 (10%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
N G P+ R+ W+ ++ + IF+ +L + + L +TF A
Sbjct: 72 MNFDVIKGKPV-------RIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA- 121
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ + KVV D +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKER 179
Query: 258 SASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKR 312
A A++ + T V++ N + DE L+E F QYG + VK+ +
Sbjct: 180 EAELG----ARAKE---FTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRG 232
Query: 313 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
GFV F A++A+ +NG L G+ I + + +Q +
Sbjct: 233 FGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTE 275
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 132/287 (45%), Gaps = 25/287 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ AER +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIDKM 158
Query: 144 NGTPMPNGEQNF-------RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N + F + A GA K +++ + D+ D L+E F
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKEWF-G 212
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
+Y + KV+ D G+++G+GFV F + +A+ +MNG + + + +G A KK
Sbjct: 213 QYGAALSVKVMTDD-HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRA-QKKV 270
Query: 257 VSASYQNSQVAQSDDDP----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA--- 309
+ + Q D ++V NLD + DE LR+ F+ +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGG 330
Query: 310 -GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 28/193 (14%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI-----GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSI 286
A+ MN +P+RI P+ K V +F+ NLD
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG------------------NIFIKNLDKS 109
Query: 287 VTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
+ ++ L + FS +G ++ K+ K GFV F + AE A+ +NG L + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVF 169
Query: 343 LSWGRSPSNKQAQ 355
+ +S ++A+
Sbjct: 170 VGRFKSRKEREAE 182
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 30/203 (14%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + G+ G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
+ NG + NG+ F G +K+ + ++V +
Sbjct: 248 VDDMNGKDL-NGKAIF------VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D L++ F + S AKV+++ GR+KG+GFV F E +A+TEMNG
Sbjct: 301 LDDGIDDERLRKEFTP-FGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 241 CSTRPMRIGPATNKKTVSASYQN 263
+T+P+ + A K+ A N
Sbjct: 358 VATKPLYVALAQRKEERQAHLTN 380
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 136/280 (48%), Gaps = 19/280 (6%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + +F+ +L + + L +TF A + +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVGN--VFIKNLDESIDNKALYDTFSA-FGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS 260
KVV D R GYGFV F + RA+ MNG+ + R + +G +++
Sbjct: 125 ILSCKVVCDEHGSR--GYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELE 182
Query: 261 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKRCGF 315
Y ++V + T V++ N + D+ LRE+FS +G + VK+ + GF
Sbjct: 183 Y-GAKVMEF------TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGF 235
Query: 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
V + + A++A+ +NG ++ G+ I + + +Q +
Sbjct: 236 VNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGE 275
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 142/286 (49%), Gaps = 25/286 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ A R +QT
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETQEAANRAIQTM 158
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--------TIFVGDLAADVTDYMLQETFR 195
NG + N + F ++ S +R+ ++ +++ + D+ D L+E F
Sbjct: 159 NGMLL-NDRKVFVGHFKS-----RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFS 212
Query: 196 ARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
A + +T KV++D TGR++G+GFV +G+ E +A++EMNG + R + +G A +
Sbjct: 213 A-FGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI 270
Query: 256 TVSASYQNS--QVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA--- 309
+ Q+ Q + ++V NLD + D+ LR+ FS YG + K+
Sbjct: 271 ERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGG 330
Query: 310 -GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354
K GFV F+ A +A+ +NG + + + ++ + ++A
Sbjct: 331 HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKA 376
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 28/193 (14%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D T R+ GY ++ F ++ R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI-----GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSI 286
A+ MN RP+RI P K V VF+ NLD
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG------------------NVFIKNLDES 109
Query: 287 VTDEHLRELFSQYGQLVHVKIPA---GKR-CGFVQFADRSCAEEALRMLNGTQLGGQNIR 342
+ ++ L + FS +G ++ K+ G R GFV F + A A++ +NG L + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVF 169
Query: 343 LSWGRSPSNKQAQ 355
+ +S ++ +
Sbjct: 170 VGHFKSRRERELE 182
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 30/203 (14%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G ++VKV+ + TG+ G+GF+ + + A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
+ NG E N R+ + G +KR + ++V +
Sbjct: 248 VSEMNGK-----EVNGRMIYV--GRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D L++ F + Y + AKV+ + G +KG+GFV F E +A+TEMNG
Sbjct: 301 LDDGIDDDRLRKEF-SPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 241 CSTRPMRIGPATNKKTVSASYQN 263
ST+P+ + A K+ A N
Sbjct: 358 VSTKPLYVALAQRKEERKAILTN 380
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 127/264 (48%), Gaps = 18/264 (6%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F+ G + +++V R+ T GY ++ + ++ +Q
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + NG + R+ W+ ++ + + IF+ +L + + L ETF + +
Sbjct: 111 LNYAEI-NG-RPCRIMWSERDPAIRKKGSGN--IFIKNLHPAIDNKALHETF-STFGEVL 165
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KV +D G ++G+GFV F +ES+ A+ +NG+ + + + KK + +
Sbjct: 166 SCKVALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLE 224
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQ 317
++ N T ++V N+D TDE +LFSQYG++V + K GFV
Sbjct: 225 EAKA-------NFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVN 277
Query: 318 FADRSCAEEALRMLNGTQLGGQNI 341
F D + A +A+ LNG + Q +
Sbjct: 278 FVDHNAAAKAVEELNGKEFKSQAL 301
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 132/287 (45%), Gaps = 21/287 (7%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ F+ GEV++ KV + + G G+GF+ F + A+ ++
Sbjct: 139 NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEA 197
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--TIFVGDLAADVTDYMLQETFRARYPS 200
NG M E ++ K ++ + I+V ++ + TD ++ F ++Y
Sbjct: 198 VNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLF-SQYGE 256
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK------ 254
A + D G+ KG+GFV F D + +A+ E+NG ++ + +G A K
Sbjct: 257 IVSAALEKD-AEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEE 315
Query: 255 -KTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---- 309
K Y+ ++A+ +F+ NLD + DE L+E F+ YG + ++
Sbjct: 316 LKKQYEQYRLEKLAKF----QGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEG 371
Query: 310 -GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
K GFV F+ A +A+ N + G+ + ++ + +++Q
Sbjct: 372 NSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQ 418
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 34/205 (16%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+++ ++ + F+ GE+V+ + ++ + G+ +G+GF+ F+ A + ++
Sbjct: 232 NIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAE-GKPKGFGFVNFVDHNAAAKAVEE 290
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGDLAA 183
NG + F+ G +K+ + + +F+ +L
Sbjct: 291 LNG-------KEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDD 343
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
+ D L+E F A Y + A+V+ D+ G +KG+GFV F E +AMTE N +
Sbjct: 344 SIDDEKLKEEF-APYGTITSARVMRDQ-EGNSKGFGFVCFSSPEEATKAMTEKNQQIVAG 401
Query: 244 RPMRIGPATNKKTVSASYQNSQVAQ 268
+P+ + A K + SQ+AQ
Sbjct: 402 KPLYVAIAQRKDV-----RRSQLAQ 421
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 128/272 (47%), Gaps = 21/272 (7%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F+ G+V +++V R+ T + GY ++ + + A ER L+
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + + R+ W+ ++ T +F+ +L + + L +TF A + +
Sbjct: 116 LNYTLIKG--RPCRIMWSQRDPALRK--TGQGNVFIKNLDTAIDNKALHDTF-AAFGNIL 170
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KV D G +KGYGFV + A+ +NG+ + + + +G KK + ++
Sbjct: 171 SCKVAQDEF-GNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFE 229
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP----AGKR--CGFV 316
+ N T V+V N+D T+E R+LF ++G++ + +GK GFV
Sbjct: 230 EMKA-------NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFV 282
Query: 317 QFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348
F A A+ LN GQ +L GR+
Sbjct: 283 NFTSHDNAAAAVEALNDKDFKGQ--KLYVGRA 312
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 109/231 (47%), Gaps = 9/231 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A+ ++
Sbjct: 144 NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKH 202
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--TIFVGDLAADVTDYMLQETFRARYPS 200
NG + + + + A K ++ + ++V ++ D T+ ++ F ++
Sbjct: 203 VNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFE-KFGE 261
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK----KT 256
A + D +G+++G+GFV F A+ +N + + +G A K +
Sbjct: 262 ITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEE 321
Query: 257 VSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 307
+ Y+ +++ ++ +++ NL + DE LRELFS YG + K+
Sbjct: 322 LRKQYEAARIEKASK-YQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKV 371
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
G++KG+GFV F E +A+TEMN +P+ + A K
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRK 471
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 136/278 (48%), Gaps = 19/278 (6%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F+ G V +++V R+ T + GY ++ F++ A ER ++
Sbjct: 48 SLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 107
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + N + R+ W+ +R T IF+ +L A + + L +TF A + +
Sbjct: 108 LNYSLIRN--RPCRIMWSQRDPALRR--TGQGNIFIKNLDAGIDNKALHDTF-AAFGNIL 162
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ 262
KV + TG + GYGFV + A+ +NG+ + + + +G +K A +
Sbjct: 163 SCKVATNE-TG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIE 220
Query: 263 NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP-----AGKRCGFVQ 317
++ N T V+ N+D VTD+ +LF+++G++ + K GFV
Sbjct: 221 ETRA-------NFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVN 273
Query: 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
F D + A++A+ L+ + GQ + ++ + S ++ +
Sbjct: 274 FEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEE 311
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 133/287 (46%), Gaps = 22/287 (7%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ FA G +++ KV N +TG + GYGF+ + + AE ++
Sbjct: 136 NIFIKNLDAGIDNKALHDTFAAFGNILSCKVATN-ETGSL-GYGFVHYETAEAAEAAIKH 193
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--TIFVGDLAADVTDYMLQETFRARYPS 200
NG + + + + K ++T + ++ ++ +VTD ++ F
Sbjct: 194 VNGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLF------ 247
Query: 201 TKGAKV---VIDR-LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
TK K+ V+ R G++KG+GFV F D +E +A+ E++ + + + A K
Sbjct: 248 TKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSE 307
Query: 257 VSASYQNSQVAQSDDDP---NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAG 310
+ S A ++ +++ N+ DE LRE F+ +G + KI P+G
Sbjct: 308 REEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSG 367
Query: 311 --KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 355
+ GFV ++ A +A+ +NG L + + ++ + ++ Q
Sbjct: 368 VSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQ 414
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,357,622
Number of Sequences: 539616
Number of extensions: 8405273
Number of successful extensions: 92789
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 1524
Number of HSP's that attempted gapping in prelim test: 50809
Number of HSP's gapped (non-prelim): 23217
length of query: 406
length of database: 191,569,459
effective HSP length: 120
effective length of query: 286
effective length of database: 126,815,539
effective search space: 36269244154
effective search space used: 36269244154
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)