Query 015450
Match_columns 406
No_of_seqs 375 out of 3615
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 06:25:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1E-46 2.2E-51 351.4 30.2 265 80-351 2-351 (352)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 2.8E-46 6.1E-51 354.5 33.5 250 78-352 55-310 (578)
3 KOG0117 Heterogeneous nuclear 100.0 2.5E-46 5.5E-51 327.6 28.5 253 79-354 81-336 (506)
4 KOG0148 Apoptosis-promoting RN 100.0 1.7E-45 3.7E-50 302.3 23.1 238 78-353 3-242 (321)
5 TIGR01628 PABP-1234 polyadenyl 100.0 6.2E-43 1.4E-47 344.1 32.8 267 80-350 87-365 (562)
6 KOG0145 RNA-binding protein EL 100.0 3.3E-42 7.1E-47 281.2 23.9 265 78-349 38-358 (360)
7 TIGR01628 PABP-1234 polyadenyl 100.0 3.4E-42 7.3E-47 338.9 28.5 253 83-351 2-263 (562)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.8E-39 8.3E-44 309.2 30.3 257 81-350 2-352 (481)
9 TIGR01622 SF-CC1 splicing fact 100.0 4E-39 8.6E-44 310.4 30.2 270 77-348 85-447 (457)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.8E-38 4E-43 304.4 30.6 260 80-349 95-480 (481)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 9.7E-38 2.1E-42 304.9 30.2 265 75-347 169-500 (509)
12 KOG0144 RNA-binding protein CU 100.0 2.9E-38 6.2E-43 275.8 22.5 270 77-351 30-506 (510)
13 TIGR01645 half-pint poly-U bin 100.0 2.6E-37 5.6E-42 293.7 28.1 174 79-253 105-283 (612)
14 KOG0127 Nucleolar protein fibr 100.0 5.1E-36 1.1E-40 268.9 23.8 268 81-350 5-379 (678)
15 TIGR01659 sex-lethal sex-letha 100.0 1.6E-35 3.5E-40 268.3 25.8 171 168-354 102-280 (346)
16 TIGR01659 sex-lethal sex-letha 100.0 3.6E-32 7.9E-37 246.5 20.0 172 77-255 103-276 (346)
17 KOG0123 Polyadenylate-binding 100.0 3.2E-32 6.8E-37 247.9 18.6 261 83-348 78-348 (369)
18 KOG0123 Polyadenylate-binding 100.0 2.4E-31 5.3E-36 242.2 21.9 239 82-348 2-245 (369)
19 TIGR01645 half-pint poly-U bin 100.0 2E-30 4.3E-35 246.8 20.5 176 172-352 106-287 (612)
20 KOG0147 Transcriptional coacti 100.0 5.3E-31 1.1E-35 238.1 13.5 276 76-353 174-532 (549)
21 KOG0144 RNA-binding protein CU 100.0 2E-30 4.3E-35 226.9 13.7 174 167-355 28-212 (510)
22 KOG0124 Polypyrimidine tract-b 100.0 8.5E-30 1.8E-34 218.3 15.1 265 80-345 112-531 (544)
23 TIGR01648 hnRNP-R-Q heterogene 100.0 1.6E-28 3.4E-33 233.7 23.4 213 80-301 137-367 (578)
24 KOG0148 Apoptosis-promoting RN 100.0 3.5E-29 7.7E-34 206.3 15.4 167 81-256 62-240 (321)
25 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.6E-28 3.5E-33 228.9 21.2 176 80-256 88-351 (352)
26 KOG0110 RNA-binding protein (R 100.0 5.7E-28 1.2E-32 224.4 17.0 259 77-350 381-694 (725)
27 TIGR01622 SF-CC1 splicing fact 100.0 2.3E-27 5.1E-32 228.6 20.6 174 170-348 86-265 (457)
28 KOG4212 RNA-binding protein hn 100.0 2.3E-26 5.1E-31 201.6 23.0 162 80-244 43-284 (608)
29 KOG0117 Heterogeneous nuclear 99.9 1.2E-25 2.6E-30 198.0 19.1 201 129-352 40-251 (506)
30 KOG4211 Splicing factor hnRNP- 99.9 1.7E-24 3.7E-29 193.6 26.1 262 77-347 6-356 (510)
31 KOG0131 Splicing factor 3b, su 99.9 1.8E-26 3.9E-31 179.5 11.5 174 78-257 6-180 (203)
32 KOG0145 RNA-binding protein EL 99.9 4.1E-26 9E-31 187.1 13.7 168 170-353 38-213 (360)
33 KOG0127 Nucleolar protein fibr 99.9 3.3E-25 7.2E-30 199.7 16.7 177 174-351 6-198 (678)
34 KOG0131 Splicing factor 3b, su 99.9 4.5E-25 9.7E-30 171.8 12.9 169 170-353 6-181 (203)
35 KOG4205 RNA-binding protein mu 99.9 1.7E-24 3.8E-29 190.0 14.6 171 172-354 5-181 (311)
36 KOG0109 RNA-binding protein LA 99.9 9.1E-25 2E-29 182.2 10.2 149 174-350 3-151 (346)
37 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.1E-22 2.4E-27 199.0 21.2 177 78-255 292-503 (509)
38 KOG0124 Polypyrimidine tract-b 99.9 4.6E-24 9.9E-29 183.2 9.5 176 173-353 113-294 (544)
39 KOG0109 RNA-binding protein LA 99.9 7.2E-24 1.6E-28 176.9 8.7 153 82-259 3-155 (346)
40 KOG4205 RNA-binding protein mu 99.9 4.7E-23 1E-27 181.0 14.2 178 79-259 4-181 (311)
41 KOG1190 Polypyrimidine tract-b 99.9 4E-21 8.6E-26 167.7 22.4 258 80-348 149-490 (492)
42 KOG0120 Splicing factor U2AF, 99.9 1.1E-21 2.5E-26 180.5 16.6 265 75-347 169-490 (500)
43 KOG0146 RNA-binding protein ET 99.9 5.8E-22 1.3E-26 163.5 12.2 180 171-352 17-368 (371)
44 KOG0146 RNA-binding protein ET 99.9 8.4E-21 1.8E-25 156.6 13.3 177 78-256 16-367 (371)
45 KOG1190 Polypyrimidine tract-b 99.8 6.3E-20 1.4E-24 160.3 17.8 260 79-349 26-373 (492)
46 KOG0110 RNA-binding protein (R 99.8 3.4E-20 7.4E-25 173.0 11.9 174 82-256 516-695 (725)
47 KOG0147 Transcriptional coacti 99.8 8.6E-21 1.9E-25 172.3 7.2 176 170-348 176-357 (549)
48 PLN03134 glycine-rich RNA-bind 99.8 3E-19 6.4E-24 142.0 14.7 80 272-351 31-116 (144)
49 KOG0105 Alternative splicing f 99.8 5E-18 1.1E-22 132.7 17.2 163 171-338 4-177 (241)
50 KOG1457 RNA binding protein (c 99.8 4.7E-18 1E-22 136.9 16.3 236 76-336 29-273 (284)
51 KOG4206 Spliceosomal protein s 99.8 5E-18 1.1E-22 138.3 16.6 173 171-347 7-220 (221)
52 KOG1456 Heterogeneous nuclear 99.8 7.6E-17 1.6E-21 139.5 22.3 263 77-351 27-365 (494)
53 KOG4211 Splicing factor hnRNP- 99.8 2.1E-17 4.6E-22 148.4 17.5 168 170-347 7-180 (510)
54 KOG1456 Heterogeneous nuclear 99.8 1.5E-15 3.3E-20 131.5 25.3 249 80-339 119-475 (494)
55 KOG4206 Spliceosomal protein s 99.7 7.9E-17 1.7E-21 131.4 16.1 163 81-252 9-220 (221)
56 KOG0105 Alternative splicing f 99.7 5.3E-17 1.2E-21 127.0 13.1 152 79-241 4-175 (241)
57 KOG0106 Alternative splicing f 99.7 7.3E-18 1.6E-22 139.0 8.4 162 174-346 2-168 (216)
58 KOG4212 RNA-binding protein hn 99.7 2.7E-16 5.8E-21 138.9 16.2 176 173-349 44-294 (608)
59 KOG1365 RNA-binding protein Fu 99.7 7.4E-16 1.6E-20 133.9 12.6 266 77-348 56-361 (508)
60 PLN03134 glycine-rich RNA-bind 99.7 5E-16 1.1E-20 123.5 10.1 85 170-255 31-115 (144)
61 KOG0125 Ataxin 2-binding prote 99.7 3.5E-16 7.6E-21 133.4 8.3 77 273-349 94-174 (376)
62 KOG1548 Transcription elongati 99.6 1.8E-14 3.8E-19 124.1 16.8 175 171-347 132-350 (382)
63 PF00076 RRM_1: RNA recognitio 99.6 2.2E-15 4.8E-20 105.4 7.6 65 278-342 1-70 (70)
64 KOG0121 Nuclear cap-binding pr 99.6 2.4E-15 5.3E-20 110.5 7.7 74 274-347 35-114 (153)
65 KOG0107 Alternative splicing f 99.6 6.9E-15 1.5E-19 114.5 10.5 78 274-351 9-87 (195)
66 KOG4207 Predicted splicing fac 99.6 3.2E-15 7E-20 119.3 8.6 79 273-351 11-95 (256)
67 KOG0122 Translation initiation 99.6 4.4E-15 9.5E-20 121.8 8.7 85 77-163 185-269 (270)
68 KOG0122 Translation initiation 99.6 5.9E-15 1.3E-19 121.1 8.8 77 273-349 187-269 (270)
69 PLN03120 nucleic acid binding 99.6 7.8E-15 1.7E-19 124.5 9.9 74 275-349 4-80 (260)
70 KOG0106 Alternative splicing f 99.6 2.8E-15 6.1E-20 123.8 6.9 151 82-251 2-168 (216)
71 KOG4307 RNA binding protein RB 99.6 4.9E-13 1.1E-17 124.9 22.0 171 78-252 308-512 (944)
72 KOG1548 Transcription elongati 99.6 1.4E-13 3E-18 118.6 16.5 170 78-255 131-353 (382)
73 KOG0149 Predicted RNA-binding 99.5 1.5E-14 3.2E-19 118.3 7.4 79 80-159 11-89 (247)
74 PF14259 RRM_6: RNA recognitio 99.5 3.7E-14 8.1E-19 99.0 8.3 65 278-342 1-70 (70)
75 PF00076 RRM_1: RNA recognitio 99.5 2E-14 4.4E-19 100.4 6.6 67 84-151 1-67 (70)
76 KOG0149 Predicted RNA-binding 99.5 1.9E-14 4.2E-19 117.7 7.3 82 171-254 10-91 (247)
77 KOG0125 Ataxin 2-binding prote 99.5 3.7E-14 8E-19 121.2 8.8 87 73-161 88-174 (376)
78 KOG0114 Predicted RNA-binding 99.5 9.4E-14 2E-18 98.2 8.7 75 273-347 16-93 (124)
79 KOG0121 Nuclear cap-binding pr 99.5 8.7E-14 1.9E-18 102.4 7.7 85 171-256 34-118 (153)
80 PLN03213 repressor of silencin 99.5 1.2E-13 2.7E-18 124.1 9.7 76 273-348 8-87 (759)
81 KOG0107 Alternative splicing f 99.5 8.1E-14 1.8E-18 108.6 6.5 77 80-161 9-85 (195)
82 PLN03121 nucleic acid binding 99.5 2.3E-13 5.1E-18 113.5 9.7 74 274-348 4-80 (243)
83 PF13893 RRM_5: RNA recognitio 99.5 2.9E-13 6.3E-18 89.6 8.1 55 292-346 1-56 (56)
84 KOG0113 U1 small nuclear ribon 99.5 1.8E-13 4E-18 115.5 7.8 91 166-257 94-184 (335)
85 COG0724 RNA-binding proteins ( 99.5 1.9E-12 4.1E-17 117.3 15.2 137 173-310 115-260 (306)
86 PF14259 RRM_6: RNA recognitio 99.5 2E-13 4.3E-18 95.3 6.6 67 84-151 1-67 (70)
87 smart00362 RRM_2 RNA recogniti 99.4 6.5E-13 1.4E-17 93.0 8.9 68 277-344 1-72 (72)
88 COG0724 RNA-binding proteins ( 99.4 1.4E-12 3.1E-17 118.1 12.8 129 81-210 115-261 (306)
89 KOG0111 Cyclophilin-type pepti 99.4 1.3E-13 2.8E-18 111.1 5.1 79 274-352 9-93 (298)
90 KOG0126 Predicted RNA-binding 99.4 2.5E-14 5.4E-19 111.9 0.1 81 77-159 31-111 (219)
91 KOG0126 Predicted RNA-binding 99.4 2E-14 4.3E-19 112.4 -0.6 110 139-257 9-118 (219)
92 KOG4207 Predicted splicing fac 99.4 2.6E-13 5.7E-18 108.5 5.6 82 77-158 9-90 (256)
93 KOG0113 U1 small nuclear ribon 99.4 5.1E-13 1.1E-17 112.9 7.5 83 78-160 98-180 (335)
94 KOG4660 Protein Mei2, essentia 99.4 4E-12 8.6E-17 116.7 13.4 144 77-234 71-231 (549)
95 PLN03120 nucleic acid binding 99.4 1.1E-12 2.3E-17 111.6 8.6 73 81-157 4-76 (260)
96 KOG0130 RNA-binding protein RB 99.4 1.3E-12 2.8E-17 97.2 6.3 80 271-350 68-153 (170)
97 KOG0129 Predicted RNA-binding 99.4 2.3E-11 5E-16 110.8 15.5 155 77-234 255-431 (520)
98 KOG0108 mRNA cleavage and poly 99.4 8.7E-13 1.9E-17 121.7 6.2 83 174-257 19-101 (435)
99 KOG0116 RasGAP SH3 binding pro 99.4 6.1E-12 1.3E-16 115.4 11.2 78 275-353 288-371 (419)
100 KOG0226 RNA-binding proteins [ 99.3 1.6E-11 3.4E-16 101.7 12.2 171 81-255 96-271 (290)
101 PLN03121 nucleic acid binding 99.3 3.4E-12 7.4E-17 106.7 8.2 73 80-156 4-76 (243)
102 cd00590 RRM RRM (RNA recogniti 99.3 8.3E-12 1.8E-16 87.9 9.2 69 277-345 1-74 (74)
103 KOG0120 Splicing factor U2AF, 99.3 5.1E-12 1.1E-16 117.3 8.8 176 78-254 286-492 (500)
104 smart00360 RRM RNA recognition 99.3 9.7E-12 2.1E-16 86.7 7.5 65 280-344 1-71 (71)
105 PLN03213 repressor of silencin 99.3 8.9E-12 1.9E-16 112.3 9.0 80 170-254 7-88 (759)
106 smart00362 RRM_2 RNA recogniti 99.3 1E-11 2.2E-16 86.9 7.4 68 83-152 1-68 (72)
107 KOG0128 RNA-binding protein SA 99.3 2.8E-13 6.2E-18 129.7 -1.0 238 80-351 570-817 (881)
108 KOG0114 Predicted RNA-binding 99.3 2.2E-11 4.8E-16 86.4 8.2 83 170-256 15-97 (124)
109 KOG0130 RNA-binding protein RB 99.3 1E-11 2.2E-16 92.5 6.7 87 169-256 68-154 (170)
110 KOG0111 Cyclophilin-type pepti 99.3 3.5E-12 7.5E-17 103.0 4.5 86 171-257 8-93 (298)
111 KOG0132 RNA polymerase II C-te 99.3 1.5E-11 3.2E-16 116.8 9.4 83 271-353 417-499 (894)
112 smart00360 RRM RNA recognition 99.3 1.7E-11 3.8E-16 85.4 7.5 67 86-152 1-67 (71)
113 KOG0129 Predicted RNA-binding 99.3 1.4E-10 3.1E-15 105.8 14.9 160 169-330 255-432 (520)
114 KOG4454 RNA binding protein (R 99.2 3.1E-12 6.7E-17 103.4 2.7 148 78-248 6-157 (267)
115 KOG0108 mRNA cleavage and poly 99.2 1.8E-11 4E-16 113.0 7.5 78 276-353 19-102 (435)
116 KOG0153 Predicted RNA-binding 99.2 3.7E-11 7.9E-16 104.0 8.1 81 268-348 221-302 (377)
117 KOG4307 RNA binding protein RB 99.2 2.2E-10 4.7E-15 107.5 13.5 167 175-344 313-509 (944)
118 KOG0415 Predicted peptidyl pro 99.2 4.1E-11 8.9E-16 103.7 6.5 82 270-351 234-321 (479)
119 cd00590 RRM RRM (RNA recogniti 99.2 1.6E-10 3.5E-15 81.1 8.0 70 83-153 1-70 (74)
120 KOG1365 RNA-binding protein Fu 99.1 3.9E-10 8.5E-15 98.7 11.1 171 170-343 57-237 (508)
121 smart00361 RRM_1 RNA recogniti 99.1 1.5E-10 3.4E-15 80.2 6.1 59 95-153 2-67 (70)
122 KOG4210 Nuclear localization s 99.1 2.5E-10 5.5E-15 100.9 8.5 176 171-352 86-267 (285)
123 smart00361 RRM_1 RNA recogniti 99.1 4.3E-10 9.3E-15 78.0 7.3 61 187-248 2-69 (70)
124 KOG4210 Nuclear localization s 99.1 3.1E-10 6.8E-15 100.3 6.7 176 79-256 86-266 (285)
125 KOG4208 Nucleolar RNA-binding 99.0 1.1E-09 2.5E-14 88.2 7.3 79 79-157 47-126 (214)
126 KOG0112 Large RNA-binding prot 99.0 5.5E-10 1.2E-14 108.0 5.7 163 170-351 369-533 (975)
127 KOG0226 RNA-binding proteins [ 99.0 5.7E-10 1.2E-14 92.6 4.6 144 192-346 118-267 (290)
128 KOG1457 RNA binding protein (c 99.0 4.4E-09 9.6E-14 85.6 9.5 87 272-358 31-127 (284)
129 PF13893 RRM_5: RNA recognitio 99.0 2E-09 4.3E-14 71.1 6.2 56 190-251 1-56 (56)
130 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.2E-09 2.5E-14 100.5 6.6 78 273-350 403-486 (940)
131 KOG0415 Predicted peptidyl pro 98.9 1.8E-09 3.8E-14 93.8 6.0 86 170-256 236-321 (479)
132 KOG0128 RNA-binding protein SA 98.9 2.7E-10 5.9E-15 109.6 -0.5 149 79-252 665-813 (881)
133 KOG4454 RNA binding protein (R 98.9 4.2E-10 9.2E-15 91.2 0.5 135 171-336 7-150 (267)
134 KOG0132 RNA polymerase II C-te 98.9 4.8E-09 1E-13 100.1 7.5 81 171-258 419-499 (894)
135 KOG0112 Large RNA-binding prot 98.8 3.5E-09 7.5E-14 102.7 5.2 166 76-257 367-534 (975)
136 KOG4208 Nucleolar RNA-binding 98.8 1.4E-08 3E-13 82.1 7.7 87 168-254 44-130 (214)
137 KOG0153 Predicted RNA-binding 98.8 1.4E-08 3.1E-13 88.2 7.9 82 74-162 221-302 (377)
138 KOG4660 Protein Mei2, essentia 98.8 1.1E-08 2.3E-13 94.6 6.9 172 168-348 70-249 (549)
139 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.9E-08 4.1E-13 92.7 7.9 84 170-254 402-485 (940)
140 PF08777 RRM_3: RNA binding mo 98.6 8.8E-08 1.9E-12 71.4 6.8 69 276-344 2-75 (105)
141 KOG0151 Predicted splicing reg 98.6 7.4E-08 1.6E-12 91.2 6.9 82 268-349 167-257 (877)
142 KOG2193 IGF-II mRNA-binding pr 98.6 9.1E-09 2E-13 91.4 0.7 151 174-348 2-156 (584)
143 PF04059 RRM_2: RNA recognitio 98.6 3.1E-07 6.7E-12 66.7 8.4 81 81-161 1-85 (97)
144 KOG4209 Splicing factor RNPS1, 98.6 1.7E-07 3.6E-12 80.3 8.1 77 272-349 98-180 (231)
145 KOG0533 RRM motif-containing p 98.6 2.1E-07 4.6E-12 79.3 8.4 81 272-352 80-165 (243)
146 PF04059 RRM_2: RNA recognitio 98.6 4.6E-07 9.9E-12 65.8 8.2 75 276-350 2-88 (97)
147 PF11608 Limkain-b1: Limkain b 98.5 5.5E-07 1.2E-11 61.9 7.8 69 276-348 3-76 (90)
148 KOG4676 Splicing factor, argin 98.5 5.2E-08 1.1E-12 85.9 3.0 209 82-344 8-221 (479)
149 KOG0533 RRM motif-containing p 98.5 3.2E-07 6.9E-12 78.2 7.6 79 78-157 80-158 (243)
150 KOG0116 RasGAP SH3 binding pro 98.5 1.2E-06 2.6E-11 81.0 11.9 73 174-248 289-361 (419)
151 KOG4209 Splicing factor RNPS1, 98.5 3.2E-07 6.9E-12 78.5 6.1 81 77-158 97-177 (231)
152 PF14605 Nup35_RRM_2: Nup53/35 98.3 2.1E-06 4.6E-11 55.2 5.1 52 276-328 2-53 (53)
153 KOG2193 IGF-II mRNA-binding pr 98.2 2.5E-07 5.5E-12 82.5 -0.5 156 82-254 2-157 (584)
154 KOG1995 Conserved Zn-finger pr 98.1 1.2E-05 2.7E-10 70.9 8.6 80 272-351 63-156 (351)
155 KOG0151 Predicted splicing reg 98.1 4.9E-06 1.1E-10 79.3 6.1 81 79-161 172-255 (877)
156 PF05172 Nup35_RRM: Nup53/35/4 98.1 1.2E-05 2.5E-10 59.0 6.4 71 275-347 6-90 (100)
157 KOG1855 Predicted RNA-binding 98.0 1.5E-05 3.2E-10 71.8 7.3 66 269-334 225-309 (484)
158 COG5175 MOT2 Transcriptional r 98.0 1.5E-05 3.3E-10 69.3 6.5 74 275-348 114-202 (480)
159 KOG4849 mRNA cleavage factor I 97.8 2.5E-05 5.4E-10 68.3 5.3 80 76-155 75-156 (498)
160 PF11608 Limkain-b1: Limkain b 97.7 0.00014 3E-09 50.3 6.3 73 174-256 3-79 (90)
161 PF08777 RRM_3: RNA binding mo 97.7 8.8E-05 1.9E-09 55.4 5.6 59 82-146 2-60 (105)
162 KOG1995 Conserved Zn-finger pr 97.6 9.7E-05 2.1E-09 65.4 5.7 86 170-256 63-156 (351)
163 KOG0115 RNA-binding protein p5 97.6 0.00016 3.5E-09 60.9 6.6 98 227-346 5-111 (275)
164 KOG1996 mRNA splicing factor [ 97.6 0.00015 3.3E-09 62.1 6.0 58 289-346 300-364 (378)
165 KOG3152 TBP-binding protein, a 97.6 3.9E-05 8.5E-10 64.4 2.3 67 274-340 73-157 (278)
166 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00015 3.2E-09 46.6 4.3 52 82-140 2-53 (53)
167 KOG4849 mRNA cleavage factor I 97.5 0.00013 2.9E-09 63.9 4.5 76 172-248 79-156 (498)
168 KOG2202 U2 snRNP splicing fact 97.4 5.7E-05 1.2E-09 63.7 1.7 58 290-347 83-146 (260)
169 KOG3152 TBP-binding protein, a 97.4 0.0001 2.2E-09 62.1 3.1 73 80-152 73-157 (278)
170 KOG0115 RNA-binding protein p5 97.4 0.00054 1.2E-08 57.8 6.7 91 133-238 4-94 (275)
171 KOG1855 Predicted RNA-binding 97.4 0.00028 6E-09 63.8 5.1 75 166-241 224-311 (484)
172 PF08952 DUF1866: Domain of un 97.3 0.001 2.2E-08 51.9 6.9 56 290-348 51-106 (146)
173 KOG2314 Translation initiation 97.2 0.00056 1.2E-08 64.0 5.6 73 77-150 54-132 (698)
174 KOG2416 Acinus (induces apopto 97.2 0.0004 8.7E-09 65.3 4.1 81 271-351 440-524 (718)
175 KOG2591 c-Mpl binding protein, 97.1 0.0014 3E-08 61.3 6.8 68 275-343 175-246 (684)
176 KOG2314 Translation initiation 97.1 0.0013 2.7E-08 61.7 6.3 70 275-344 58-139 (698)
177 PF15023 DUF4523: Protein of u 97.0 0.0046 1E-07 47.4 7.6 76 270-347 81-160 (166)
178 KOG2135 Proteins containing th 97.0 0.00038 8.2E-09 63.8 1.9 75 273-348 370-445 (526)
179 COG5175 MOT2 Transcriptional r 96.9 0.0021 4.6E-08 56.3 6.0 116 172-295 113-240 (480)
180 KOG3671 Actin regulatory prote 96.8 0.014 3.1E-07 54.2 10.5 29 80-108 480-508 (569)
181 PF08675 RNA_bind: RNA binding 96.7 0.014 3E-07 40.6 7.7 55 275-332 9-63 (87)
182 KOG4676 Splicing factor, argin 96.6 0.0024 5.2E-08 57.2 4.0 71 276-347 8-87 (479)
183 PF04847 Calcipressin: Calcipr 96.6 0.0064 1.4E-07 50.3 6.1 62 288-349 8-71 (184)
184 KOG4285 Mitotic phosphoprotein 96.6 0.0043 9.2E-08 53.8 5.1 70 276-347 198-268 (350)
185 KOG2202 U2 snRNP splicing fact 96.5 0.0017 3.7E-08 55.0 2.6 64 188-252 83-146 (260)
186 PF10309 DUF2414: Protein of u 96.5 0.015 3.3E-07 38.3 6.2 55 275-331 5-62 (62)
187 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.0078 1.7E-07 44.2 5.2 69 80-150 5-80 (100)
188 PF10309 DUF2414: Protein of u 96.0 0.036 7.7E-07 36.6 6.0 54 82-143 6-62 (62)
189 KOG2068 MOT2 transcription fac 95.9 0.003 6.6E-08 55.8 1.2 75 275-349 77-163 (327)
190 KOG2416 Acinus (induces apopto 95.8 0.0075 1.6E-07 57.1 3.2 78 77-160 440-519 (718)
191 KOG1996 mRNA splicing factor [ 95.8 0.028 6E-07 48.6 6.1 65 187-252 300-365 (378)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.017 3.6E-07 47.7 4.7 71 79-149 5-81 (176)
193 KOG2253 U1 snRNP complex, subu 95.6 0.016 3.5E-07 55.8 4.8 69 81-158 40-108 (668)
194 PF07576 BRAP2: BRCA1-associat 95.6 0.17 3.6E-06 38.1 9.0 65 274-338 12-81 (110)
195 PF08675 RNA_bind: RNA binding 95.6 0.065 1.4E-06 37.4 6.2 54 83-145 11-64 (87)
196 KOG4574 RNA-binding protein (c 95.4 0.0087 1.9E-07 59.1 2.3 78 276-353 299-378 (1007)
197 PF07576 BRAP2: BRCA1-associat 95.4 0.19 4.2E-06 37.7 8.9 65 83-149 15-80 (110)
198 PF08952 DUF1866: Domain of un 95.4 0.026 5.7E-07 44.1 4.4 53 97-158 52-104 (146)
199 KOG0804 Cytoplasmic Zn-finger 94.8 0.27 5.8E-06 45.5 9.6 72 170-243 71-142 (493)
200 KOG4672 Uncharacterized conser 94.3 0.19 4.2E-06 45.7 7.5 9 186-194 471-479 (487)
201 KOG2591 c-Mpl binding protein, 94.1 0.081 1.7E-06 50.0 4.9 59 78-143 172-232 (684)
202 PF03467 Smg4_UPF3: Smg-4/UPF3 93.9 0.085 1.8E-06 43.6 4.3 75 274-348 6-97 (176)
203 PF10567 Nab6_mRNP_bdg: RNA-re 93.4 4 8.7E-05 35.9 13.4 163 169-333 11-213 (309)
204 PF03880 DbpA: DbpA RNA bindin 93.1 0.57 1.2E-05 32.4 6.8 58 286-346 12-74 (74)
205 KOG3973 Uncharacterized conser 93.0 0.21 4.6E-06 44.4 5.2 18 389-406 375-392 (465)
206 PF11767 SET_assoc: Histone ly 92.9 0.54 1.2E-05 31.6 6.0 55 184-248 11-65 (66)
207 KOG0804 Cytoplasmic Zn-finger 92.9 0.34 7.4E-06 44.9 6.6 64 275-338 74-142 (493)
208 KOG2068 MOT2 transcription fac 92.9 0.076 1.7E-06 47.2 2.5 71 82-152 78-154 (327)
209 KOG2318 Uncharacterized conser 92.8 0.4 8.7E-06 45.8 7.2 74 272-345 171-304 (650)
210 KOG4574 RNA-binding protein (c 92.7 0.074 1.6E-06 52.9 2.4 74 83-162 300-373 (1007)
211 PF15023 DUF4523: Protein of u 92.6 1 2.2E-05 35.0 7.8 73 169-250 82-158 (166)
212 PF07292 NID: Nmi/IFP 35 domai 92.5 0.13 2.8E-06 36.7 2.8 68 126-194 1-73 (88)
213 KOG4019 Calcineurin-mediated s 92.4 0.14 3.1E-06 41.3 3.3 75 275-349 10-90 (193)
214 PF11767 SET_assoc: Histone ly 92.3 0.78 1.7E-05 30.8 6.2 55 286-343 11-65 (66)
215 KOG2253 U1 snRNP complex, subu 92.2 0.086 1.9E-06 51.1 2.0 70 273-345 38-107 (668)
216 KOG2891 Surface glycoprotein [ 92.1 0.43 9.3E-06 41.2 5.9 76 274-349 148-268 (445)
217 KOG1923 Rac1 GTPase effector F 92.0 0.83 1.8E-05 45.4 8.4 10 10-19 282-291 (830)
218 KOG3671 Actin regulatory prote 91.9 0.91 2E-05 42.8 8.2 8 134-141 496-503 (569)
219 PRK11634 ATP-dependent RNA hel 91.9 1.2 2.7E-05 44.9 10.0 61 286-347 498-561 (629)
220 PF07292 NID: Nmi/IFP 35 domai 91.8 0.18 3.9E-06 36.0 2.8 73 219-297 1-74 (88)
221 PF10567 Nab6_mRNP_bdg: RNA-re 89.7 0.81 1.7E-05 40.1 5.5 80 269-348 9-107 (309)
222 KOG2318 Uncharacterized conser 89.4 1.4 3E-05 42.3 7.2 83 78-160 171-305 (650)
223 KOG4285 Mitotic phosphoprotein 88.7 1.1 2.4E-05 39.4 5.5 62 81-150 197-258 (350)
224 KOG2135 Proteins containing th 87.1 0.33 7.2E-06 45.2 1.6 76 79-163 370-446 (526)
225 KOG1923 Rac1 GTPase effector F 86.6 1.9 4.1E-05 43.0 6.5 7 290-296 683-689 (830)
226 PF14111 DUF4283: Domain of un 85.6 1.6 3.5E-05 35.0 4.8 112 184-310 28-140 (153)
227 PF04847 Calcipressin: Calcipr 85.5 2.1 4.6E-05 35.5 5.4 62 186-254 8-71 (184)
228 KOG3875 Peroxisomal biogenesis 83.0 1.4 3.1E-05 38.8 3.5 13 389-401 90-102 (362)
229 KOG3973 Uncharacterized conser 82.2 3 6.5E-05 37.5 5.2 13 389-401 451-463 (465)
230 KOG4410 5-formyltetrahydrofola 81.0 6.1 0.00013 34.5 6.4 50 273-322 328-378 (396)
231 COG5178 PRP8 U5 snRNP spliceos 79.6 1.8 4E-05 45.2 3.4 36 81-116 72-107 (2365)
232 PF03880 DbpA: DbpA RNA bindin 78.8 8.7 0.00019 26.5 5.7 57 91-156 11-72 (74)
233 PF00403 HMA: Heavy-metal-asso 78.2 12 0.00025 24.5 6.1 54 277-330 1-58 (62)
234 KOG2891 Surface glycoprotein [ 76.0 7.7 0.00017 33.7 5.6 92 108-207 67-194 (445)
235 COG5178 PRP8 U5 snRNP spliceos 75.5 3 6.4E-05 43.7 3.5 19 98-116 126-144 (2365)
236 COG5638 Uncharacterized conser 73.9 15 0.00032 34.0 7.1 75 271-345 142-294 (622)
237 PF15513 DUF4651: Domain of un 73.2 8.6 0.00019 25.3 4.1 18 290-307 9-26 (62)
238 PRK14548 50S ribosomal protein 71.8 16 0.00035 25.9 5.6 53 279-331 24-81 (84)
239 KOG4483 Uncharacterized conser 67.8 10 0.00022 35.0 4.7 54 82-142 392-446 (528)
240 TIGR03636 L23_arch archaeal ri 67.5 24 0.00052 24.6 5.6 54 278-331 16-74 (77)
241 KOG2295 C2H2 Zn-finger protein 67.0 1.2 2.6E-05 42.5 -1.2 70 81-150 231-300 (648)
242 KOG1830 Wiskott Aldrich syndro 64.1 51 0.0011 30.9 8.4 18 236-253 487-504 (518)
243 PHA03378 EBNA-3B; Provisional 62.1 99 0.0021 31.1 10.4 23 81-103 806-830 (991)
244 KOG2295 C2H2 Zn-finger protein 61.7 2.8 6.1E-05 40.2 0.2 69 273-341 229-303 (648)
245 PF03468 XS: XS domain; Inter 60.3 13 0.00027 28.3 3.5 45 94-141 30-75 (116)
246 KOG4410 5-formyltetrahydrofola 59.8 19 0.0004 31.6 4.7 50 80-135 329-379 (396)
247 KOG4483 Uncharacterized conser 59.4 14 0.00029 34.2 4.0 56 274-330 390-446 (528)
248 PF08544 GHMP_kinases_C: GHMP 56.0 39 0.00085 23.5 5.4 42 290-332 37-80 (85)
249 PHA03378 EBNA-3B; Provisional 55.8 90 0.002 31.4 9.0 7 277-283 945-951 (991)
250 COG5638 Uncharacterized conser 55.4 76 0.0017 29.6 8.0 41 77-117 142-187 (622)
251 COG2608 CopZ Copper chaperone 55.1 47 0.001 22.5 5.4 46 276-321 4-49 (71)
252 PF14111 DUF4283: Domain of un 52.7 24 0.00053 28.0 4.3 106 92-206 28-137 (153)
253 PRK01178 rps24e 30S ribosomal 52.2 51 0.0011 24.3 5.3 48 183-231 29-80 (99)
254 PF11061 DUF2862: Protein of u 52.2 38 0.00082 22.6 4.1 32 290-321 18-52 (64)
255 PF03468 XS: XS domain; Inter 51.5 22 0.00048 27.0 3.5 43 287-329 29-75 (116)
256 KOG3424 40S ribosomal protein 50.8 45 0.00097 25.1 4.8 47 183-230 33-83 (132)
257 PRK15313 autotransport protein 49.8 34 0.00073 35.8 5.5 13 83-95 651-663 (955)
258 PRK14548 50S ribosomal protein 46.0 91 0.002 22.1 5.7 58 176-236 23-81 (84)
259 PF02714 DUF221: Domain of unk 46.0 24 0.00053 32.3 3.7 36 314-351 1-36 (325)
260 cd04908 ACT_Bt0572_1 N-termina 44.5 90 0.0019 20.5 7.5 47 288-335 14-63 (66)
261 PF12829 Mhr1: Transcriptional 43.5 63 0.0014 23.3 4.5 52 281-332 18-72 (91)
262 PF11823 DUF3343: Protein of u 43.4 34 0.00074 23.4 3.2 27 312-338 2-28 (73)
263 TIGR03636 L23_arch archaeal ri 42.9 1.1E+02 0.0025 21.2 5.7 58 176-236 16-74 (77)
264 PF03439 Spt5-NGN: Early trans 42.7 48 0.001 23.5 3.9 35 301-335 33-68 (84)
265 PF02714 DUF221: Domain of unk 42.2 50 0.0011 30.2 5.2 57 219-298 1-57 (325)
266 cd04889 ACT_PDH-BS-like C-term 42.1 87 0.0019 19.7 5.0 40 289-328 12-55 (56)
267 PRK10629 EnvZ/OmpR regulon mod 41.1 1.7E+02 0.0037 22.7 8.0 59 287-347 50-109 (127)
268 KOG4019 Calcineurin-mediated s 40.7 11 0.00024 30.8 0.5 64 82-151 11-79 (193)
269 PTZ00071 40S ribosomal protein 39.0 92 0.002 24.2 5.2 47 183-230 34-85 (132)
270 COG4907 Predicted membrane pro 39.0 41 0.00089 31.9 3.9 43 289-335 488-539 (595)
271 KOG1295 Nonsense-mediated deca 38.3 29 0.00064 32.0 2.8 69 80-148 6-77 (376)
272 PRK15313 autotransport protein 37.7 63 0.0014 33.9 5.2 9 81-89 638-646 (955)
273 PF08734 GYD: GYD domain; Int 36.6 1.6E+02 0.0035 21.2 6.1 44 289-332 22-68 (91)
274 COG2004 RPS24A Ribosomal prote 35.1 1.5E+02 0.0032 22.2 5.4 46 183-229 30-79 (107)
275 KOG4213 RNA-binding protein La 34.9 19 0.00041 29.4 0.9 65 275-344 111-182 (205)
276 TIGR01005 eps_transp_fam exopo 34.0 1.6E+02 0.0035 30.7 7.9 13 320-332 692-704 (754)
277 PF01690 PLRV_ORF5: Potato lea 33.4 45 0.00097 31.9 3.2 9 126-134 126-134 (465)
278 KOG1925 Rac1 GTPase effector F 33.2 50 0.0011 31.7 3.4 26 79-104 304-329 (817)
279 COG4010 Uncharacterized protei 32.8 1.3E+02 0.0028 23.7 5.0 47 282-332 118-164 (170)
280 KOG4213 RNA-binding protein La 32.5 64 0.0014 26.4 3.5 58 81-142 111-169 (205)
281 KOG2675 Adenylate cyclase-asso 32.0 29 0.00063 32.6 1.8 9 315-323 454-462 (480)
282 KOG4008 rRNA processing protei 31.5 37 0.0008 29.1 2.1 35 77-111 36-70 (261)
283 PF01282 Ribosomal_S24e: Ribos 31.2 83 0.0018 22.3 3.6 48 183-231 11-62 (84)
284 KOG0524 Pyruvate dehydrogenase 30.6 3.9E+02 0.0085 23.8 8.8 50 280-332 207-259 (359)
285 COG5193 LHP1 La protein, small 30.5 25 0.00055 32.6 1.1 62 80-141 173-244 (438)
286 PF04625 DEC-1_N: DEC-1 protei 30.4 1.5E+02 0.0033 26.7 5.7 9 108-116 210-218 (407)
287 PF11411 DNA_ligase_IV: DNA li 30.4 36 0.00078 19.7 1.3 16 285-300 19-34 (36)
288 COG2088 SpoVG Uncharacterized 30.0 78 0.0017 22.4 3.1 27 107-133 2-28 (95)
289 PRK11230 glycolate oxidase sub 29.1 2E+02 0.0044 28.3 7.2 44 290-333 204-256 (499)
290 cd04904 ACT_AAAH ACT domain of 28.5 1.9E+02 0.0041 19.6 5.1 46 288-333 13-65 (74)
291 KOG4008 rRNA processing protei 28.4 47 0.001 28.5 2.2 35 273-307 38-72 (261)
292 COG5470 Uncharacterized conser 28.3 1E+02 0.0023 22.3 3.6 39 291-329 24-71 (96)
293 TIGR02542 B_forsyth_147 Bacter 28.1 1.8E+02 0.004 21.9 5.0 46 181-226 82-129 (145)
294 PF12091 DUF3567: Protein of u 27.9 56 0.0012 23.1 2.2 37 124-181 9-45 (85)
295 PF14893 PNMA: PNMA 27.9 64 0.0014 29.7 3.2 49 274-322 17-73 (331)
296 PF04026 SpoVG: SpoVG; InterP 27.8 1E+02 0.0022 21.9 3.6 26 107-132 2-27 (84)
297 PF13689 DUF4154: Domain of un 27.3 3.1E+02 0.0067 21.6 8.9 53 216-284 26-78 (145)
298 PF09869 DUF2096: Uncharacteri 27.0 1.9E+02 0.0041 23.5 5.2 53 275-332 112-164 (169)
299 PRK13259 regulatory protein Sp 26.6 1.2E+02 0.0025 22.1 3.7 26 107-132 2-27 (94)
300 COG1058 CinA Predicted nucleot 26.3 1.8E+02 0.0038 25.7 5.5 61 273-333 178-244 (255)
301 KOG1984 Vesicle coat complex C 26.1 3.6E+02 0.0078 28.4 8.1 19 313-331 632-650 (1007)
302 COG4314 NosL Predicted lipopro 25.9 1.1E+02 0.0023 24.5 3.6 70 76-148 80-151 (176)
303 PRK11901 hypothetical protein; 25.8 5.2E+02 0.011 23.7 11.8 64 77-145 241-306 (327)
304 KOG1295 Nonsense-mediated deca 25.8 79 0.0017 29.3 3.4 62 275-336 7-77 (376)
305 PF06003 SMN: Survival motor n 25.6 23 0.0005 31.4 0.0 8 95-102 225-232 (264)
306 CHL00123 rps6 ribosomal protei 25.5 2.1E+02 0.0045 20.9 5.0 63 277-343 10-92 (97)
307 smart00596 PRE_C2HC PRE_C2HC d 25.3 1.2E+02 0.0027 20.5 3.4 63 188-254 2-65 (69)
308 COG5353 Uncharacterized protei 24.9 2.7E+02 0.0058 22.2 5.6 48 276-323 88-154 (161)
309 cd01201 Neurobeachin Neurobeac 24.7 1.8E+02 0.0038 21.8 4.4 53 279-331 50-105 (108)
310 PRK07764 DNA polymerase III su 24.3 3E+02 0.0064 29.2 7.6 18 124-141 546-563 (824)
311 PF12993 DUF3877: Domain of un 24.3 1E+02 0.0022 25.1 3.4 36 285-320 107-143 (175)
312 PF07530 PRE_C2HC: Associated 23.5 1.4E+02 0.0031 20.1 3.6 63 188-254 2-65 (68)
313 PF08156 NOP5NT: NOP5NT (NUC12 23.0 26 0.00057 23.6 -0.1 39 290-332 27-65 (67)
314 PRK08559 nusG transcription an 22.4 2.4E+02 0.0052 22.6 5.3 34 302-335 36-70 (153)
315 cd04882 ACT_Bt0572_2 C-termina 22.2 2.2E+02 0.0048 18.1 5.1 45 289-334 13-62 (65)
316 TIGR00082 rbfA ribosome-bindin 21.9 1.9E+02 0.0042 21.8 4.4 32 301-332 34-68 (114)
317 KOG4592 Uncharacterized conser 21.7 2.7E+02 0.0058 27.9 6.1 9 299-307 537-545 (728)
318 KOG1925 Rac1 GTPase effector F 21.6 4.7E+02 0.01 25.5 7.5 18 175-192 438-455 (817)
319 PF10281 Ish1: Putative stress 21.6 72 0.0015 18.5 1.6 17 286-302 3-19 (38)
320 cd04894 ACT_ACR-like_1 ACT dom 21.5 1.4E+02 0.003 19.9 2.9 30 290-319 15-45 (69)
321 PRK12450 foldase protein PrsA; 21.4 1.7E+02 0.0037 26.7 4.8 39 286-332 132-170 (309)
322 PF02033 RBFA: Ribosome-bindin 21.3 2.3E+02 0.0051 20.8 4.7 35 300-334 29-66 (104)
323 KOG2187 tRNA uracil-5-methyltr 21.3 76 0.0016 30.9 2.5 44 308-351 60-103 (534)
324 PF01690 PLRV_ORF5: Potato lea 21.0 91 0.002 29.9 2.9 10 81-90 50-59 (465)
325 cd00874 RNA_Cyclase_Class_II R 20.4 5.3E+02 0.012 23.8 7.7 115 87-224 118-238 (326)
326 KOG4365 Uncharacterized conser 20.4 20 0.00043 33.6 -1.5 73 275-348 3-81 (572)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1e-46 Score=351.42 Aligned_cols=265 Identities=26% Similarity=0.447 Sum_probs=222.5
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 159 (406)
...+|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+||+.||+..+.++. +++.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~--i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKT--IKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCee--EEEEe
Confidence 4678999999999999999999999999999999999999999999999999999999999999999997654 55555
Q ss_pred cccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCc
Q 015450 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (406)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 239 (406)
+... .......+|||+||+.++++++|+++| +.||.|..+.++.+..++.++|||||+|.+.++|.+|++.|++.
T Consensus 80 a~~~----~~~~~~~~l~v~~l~~~~~~~~l~~~f-~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~ 154 (352)
T TIGR01661 80 ARPS----SDSIKGANLYVSGLPKTMTQHELESIF-SPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGT 154 (352)
T ss_pred eccc----ccccccceEEECCccccCCHHHHHHHH-hccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 4332 223345689999999999999999999 89999999999999888999999999999999999999999999
Q ss_pred cccC--cceEecccCCCCccccccc-------------C-----------------------------------------
Q 015450 240 FCST--RPMRIGPATNKKTVSASYQ-------------N----------------------------------------- 263 (406)
Q Consensus 240 ~~~g--~~i~v~~~~~~~~~~~~~~-------------~----------------------------------------- 263 (406)
.+.+ +.|.|.++........... .
T Consensus 155 ~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (352)
T TIGR01661 155 TPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHA 234 (352)
T ss_pred ccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcc
Confidence 9877 5677777754431100000 0
Q ss_pred -----------------------CccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEE
Q 015450 264 -----------------------SQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCG 314 (406)
Q Consensus 264 -----------------------~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~a 314 (406)
...........+++|||+||+.++++++|+++|++||.|++|+|.++ ||||
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~a 314 (352)
T TIGR01661 235 VAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYG 314 (352)
T ss_pred cccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceE
Confidence 00000000122347999999999999999999999999999999754 7999
Q ss_pred EEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCC
Q 015450 315 FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351 (406)
Q Consensus 315 fV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 351 (406)
||+|.+.++|.+|+..|||..|+||.|+|.|+.++..
T Consensus 315 FV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 315 FVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred EEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999999999999999886653
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=2.8e-46 Score=354.46 Aligned_cols=250 Identities=21% Similarity=0.366 Sum_probs=209.7
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
+...++|||+|||.++++++|+++|++||.|.+|+|++| .+|+++|||||+|.+.++|++||+.||+..+... +.+.+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G-r~l~V 132 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG-RLLGV 132 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCC-ccccc
Confidence 345689999999999999999999999999999999999 7899999999999999999999999999888532 22333
Q ss_pred eecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCC-CcceeEEEe-cCCCCCCcceEEEEecCHHHHHHHHHH
Q 015450 158 NWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVVI-DRLTGRTKGYGFVRFGDESEQLRAMTE 235 (406)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g-~v~~~~~~~-~~~~~~~~g~afv~f~~~~~a~~a~~~ 235 (406)
.+ ....++|||+|||+++++++|++.| +.++ .+.++.+.. ....++++|||||+|.+.++|..|++.
T Consensus 133 ~~----------S~~~~rLFVgNLP~~~TeeeL~eeF-skv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Airk 201 (578)
T TIGR01648 133 CI----------SVDNCRLFVGGIPKNKKREEILEEF-SKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRK 201 (578)
T ss_pred cc----------cccCceeEeecCCcchhhHHHHHHh-hcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHH
Confidence 22 2336799999999999999999999 6664 344443332 233567899999999999999999988
Q ss_pred hcC--ccccCcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccC--CcEEEEEeeCCC
Q 015450 236 MNG--VFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQY--GQLVHVKIPAGK 311 (406)
Q Consensus 236 ~~~--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~--G~i~~v~i~~~~ 311 (406)
|+. ..+.|+.|.|+|+........ ......++|||+||+.++++|+|+++|+.| |.|++|.+.+
T Consensus 202 L~~gki~l~Gr~I~VdwA~p~~~~d~----------~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-- 269 (578)
T TIGR01648 202 LMPGRIQLWGHVIAVDWAEPEEEVDE----------DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-- 269 (578)
T ss_pred hhccceEecCceEEEEeecccccccc----------cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--
Confidence 764 457899999999886544321 122345789999999999999999999999 9999998864
Q ss_pred eEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCCC
Q 015450 312 RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 352 (406)
Q Consensus 312 g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 352 (406)
+||||+|++.++|.+|++.||+.+|+|+.|+|+|+++....
T Consensus 270 gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 270 DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 59999999999999999999999999999999999876543
No 3
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.5e-46 Score=327.57 Aligned_cols=253 Identities=18% Similarity=0.334 Sum_probs=222.0
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
...+.|||+.||.++.|++|..+|++.|+|.++++++|+.+|.++|||||.|.+.+.|++||+.||+.+|.. ++.|.+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~-GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRP-GKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccC-CCEeEEE
Confidence 568999999999999999999999999999999999999999999999999999999999999999998863 3344443
Q ss_pred ecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCC-CCCCcceEEEEecCHHHHHHHHHHhc
Q 015450 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL-TGRTKGYGFVRFGDESEQLRAMTEMN 237 (406)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~~~ 237 (406)
. +..+++|||||+|.+.++++|++.+++.-..|.+|.+..+.. ..++||||||+|.+...|..|.+.|-
T Consensus 160 ~----------Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~ 229 (506)
T KOG0117|consen 160 V----------SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLM 229 (506)
T ss_pred E----------eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhcc
Confidence 2 345689999999999999999999965555677777766543 45789999999999999999988774
Q ss_pred --CccccCcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEE
Q 015450 238 --GVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGF 315 (406)
Q Consensus 238 --~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~af 315 (406)
...+.|..+.|.|+.+......+ .....+.|||+||+.++|+|.|+++|+.||.|++|+..+| |||
T Consensus 230 ~g~~klwgn~~tVdWAep~~e~ded----------~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--YaF 297 (506)
T KOG0117|consen 230 PGKIKLWGNAITVDWAEPEEEPDED----------TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--YAF 297 (506)
T ss_pred CCceeecCCcceeeccCcccCCChh----------hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--eeE
Confidence 45679999999999998775432 3334678999999999999999999999999999999876 999
Q ss_pred EEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCCCCC
Q 015450 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 354 (406)
Q Consensus 316 V~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~ 354 (406)
|.|.+.++|.+|++.+||++|+|..|.|.+||+..++..
T Consensus 298 VHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 298 VHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred EeecchHHHHHHHHHhcCceecCceEEEEecCChhhhcc
Confidence 999999999999999999999999999999998776554
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-45 Score=302.29 Aligned_cols=238 Identities=32% Similarity=0.590 Sum_probs=203.3
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
.++-+||||+||..++||+-|..||++.|.|.+|+++.+ .+++
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------------e~~v 45 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------------ELKV 45 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------hhcc
Confidence 456789999999999999999999999999999999876 2233
Q ss_pred eecccCCCC-CCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHh
Q 015450 158 NWASFGAGE-KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (406)
Q Consensus 158 ~~~~~~~~~-~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 236 (406)
.|+...... +........+||+.|...++.++|++.| ..||+|.+++|++|..|+++|||+||.|.+.++|+.||..|
T Consensus 46 ~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF-~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 46 NWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAF-APFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ccccCcccCCCCccccceeEEehhcchhcchHHHHHHh-ccccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 333322111 1222335689999999999999999999 89999999999999999999999999999999999999999
Q ss_pred cCccccCcceEecccCCCCccccccc-CCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEE
Q 015450 237 NGVFCSTRPMRIGPATNKKTVSASYQ-NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGF 315 (406)
Q Consensus 237 ~~~~~~g~~i~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~af 315 (406)
||..|++|.|+-+|+..+........ .-...-.....++++|||+||+..++|++|++.|+.||.|.+|++.+++||+|
T Consensus 125 nGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaF 204 (321)
T KOG0148|consen 125 NGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAF 204 (321)
T ss_pred CCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEE
Confidence 99999999999999998873221110 01112234567899999999999999999999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCCCC
Q 015450 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353 (406)
Q Consensus 316 V~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 353 (406)
|+|++.|+|.+||..+|+.+|+|+.++|.|.|......
T Consensus 205 VrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 205 VRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred EEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 99999999999999999999999999999999765543
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6.2e-43 Score=344.11 Aligned_cols=267 Identities=26% Similarity=0.458 Sum_probs=223.8
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 159 (406)
...+|||+||+.++++++|+++|++||.|.+|++..+. +|+++|||||+|.+.++|.+|++.+||..+.++.+.+....
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 35689999999999999999999999999999999885 78999999999999999999999999998876554443221
Q ss_pred cccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCc
Q 015450 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (406)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 239 (406)
..... ........++|||+||+.++++++|+++| +.||.|.++.++.+. +++++|||||+|.+.++|.+|++.+++.
T Consensus 166 ~~~~~-~~~~~~~~~~l~V~nl~~~~tee~L~~~F-~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~ 242 (562)
T TIGR01628 166 KKHER-EAAPLKKFTNLYVKNLDPSVNEDKLRELF-AKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGK 242 (562)
T ss_pred ccccc-ccccccCCCeEEEeCCCCcCCHHHHHHHH-HhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCc
Confidence 11111 12234455789999999999999999999 899999999998885 7889999999999999999999999999
Q ss_pred ccc----CcceEecccCCCCcccccccCC---ccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC--
Q 015450 240 FCS----TRPMRIGPATNKKTVSASYQNS---QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-- 310 (406)
Q Consensus 240 ~~~----g~~i~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-- 310 (406)
.+. ++.+.|.++..+.......... ...........++|||+||+.++++++|+++|+.||.|++|++..+
T Consensus 243 ~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~ 322 (562)
T TIGR01628 243 KIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEK 322 (562)
T ss_pred EecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCC
Confidence 999 9999998887665442111110 0011122345678999999999999999999999999999999654
Q ss_pred ---CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCC
Q 015450 311 ---KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350 (406)
Q Consensus 311 ---~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 350 (406)
+|+|||+|.+.++|.+|+..|||..|+|+.|+|.+++.+.
T Consensus 323 g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 323 GVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred CCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 6899999999999999999999999999999999998654
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.3e-42 Score=281.20 Aligned_cols=265 Identities=26% Similarity=0.453 Sum_probs=228.7
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
......|.|.-||..+|++||+.+|+..|+|++|++++|+.+|++.||+||.|.++++|++|+..|||..+ ..+.|++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL--Q~KTIKV 115 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL--QNKTIKV 115 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee--ccceEEE
Confidence 34456699999999999999999999999999999999999999999999999999999999999999888 5667777
Q ss_pred eecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhc
Q 015450 158 NWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (406)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 237 (406)
+++...+. ......|||.+||..++..+|+++| +.||.|...+|+.|..+|.+||.+||.|+..++|++|++.||
T Consensus 116 SyARPSs~----~Ik~aNLYvSGlPktMtqkelE~iF-s~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lN 190 (360)
T KOG0145|consen 116 SYARPSSD----SIKDANLYVSGLPKTMTQKELEQIF-SPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLN 190 (360)
T ss_pred EeccCChh----hhcccceEEecCCccchHHHHHHHH-HHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhcc
Confidence 77765533 3345689999999999999999999 899999999999999999999999999999999999999999
Q ss_pred CccccC--cceEecccCCCCccccc------------------------c---------------c---------CCccc
Q 015450 238 GVFCST--RPMRIGPATNKKTVSAS------------------------Y---------------Q---------NSQVA 267 (406)
Q Consensus 238 ~~~~~g--~~i~v~~~~~~~~~~~~------------------------~---------------~---------~~~~~ 267 (406)
|..-.| .+|.|+++......... . . -....
T Consensus 191 G~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~ 270 (360)
T KOG0145|consen 191 GQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVN 270 (360)
T ss_pred CCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeec
Confidence 988765 57888888765443110 0 0 00000
Q ss_pred cCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEE
Q 015450 268 QSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNI 341 (406)
Q Consensus 268 ~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l 341 (406)
.........+|||.||..+++|.-|.++|..||.|..|+|.+| |||+||++.+-++|..||..|||..+++|.|
T Consensus 271 lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvL 350 (360)
T KOG0145|consen 271 LPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 350 (360)
T ss_pred cCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEE
Confidence 1122345789999999999999999999999999999999887 8999999999999999999999999999999
Q ss_pred EEeeccCC
Q 015450 342 RLSWGRSP 349 (406)
Q Consensus 342 ~v~~~~~~ 349 (406)
.|+|..++
T Consensus 351 QVsFKtnk 358 (360)
T KOG0145|consen 351 QVSFKTNK 358 (360)
T ss_pred EEEEecCC
Confidence 99997654
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.4e-42 Score=338.94 Aligned_cols=253 Identities=28% Similarity=0.519 Sum_probs=222.1
Q ss_pred eeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeeccc
Q 015450 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASF 162 (406)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~ 162 (406)
+|||+||+.++|+++|+++|++||.|.+|+|++|..+++++|||||+|.+.++|++|++.+++..+.+ +.|++.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~g--k~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGG--KPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC--eeEEeecccc
Confidence 79999999999999999999999999999999999999999999999999999999999999988855 5567777653
Q ss_pred CCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc
Q 015450 163 GAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (406)
Q Consensus 163 ~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~ 242 (406)
... .......+|||+||+.++++++|+++| +.||.|.+|+++.+. +++++|||||+|.+.++|.+|++.+++..+.
T Consensus 80 ~~~--~~~~~~~~vfV~nLp~~~~~~~L~~~F-~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~ 155 (562)
T TIGR01628 80 DPS--LRRSGVGNIFVKNLDKSVDNKALFDTF-SKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLN 155 (562)
T ss_pred ccc--ccccCCCceEEcCCCccCCHHHHHHHH-HhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEec
Confidence 322 223345689999999999999999999 899999999999885 7889999999999999999999999999999
Q ss_pred CcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEE
Q 015450 243 TRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQ 317 (406)
Q Consensus 243 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~ 317 (406)
++.|.|.....+.... .......++|||+||+.++|+++|+++|+.||.|+++.+.++ +|||||+
T Consensus 156 ~~~i~v~~~~~~~~~~----------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~ 225 (562)
T TIGR01628 156 DKEVYVGRFIKKHERE----------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVN 225 (562)
T ss_pred CceEEEeccccccccc----------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEE
Confidence 9999997655443321 112334578999999999999999999999999999999654 6899999
Q ss_pred eCChHHHHHHHHHhcCCccC----CcEEEEeeccCCCC
Q 015450 318 FADRSCAEEALRMLNGTQLG----GQNIRLSWGRSPSN 351 (406)
Q Consensus 318 F~~~~~A~~A~~~l~g~~~~----g~~l~v~~~~~~~~ 351 (406)
|++.++|.+|++.|+|..|. |+.|.|.+++.+..
T Consensus 226 F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~e 263 (562)
T TIGR01628 226 FEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAE 263 (562)
T ss_pred ECCHHHHHHHHHHhCCcEecccccceeeEeecccChhh
Confidence 99999999999999999999 99999988865443
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.8e-39 Score=309.16 Aligned_cols=257 Identities=19% Similarity=0.205 Sum_probs=205.0
Q ss_pred cceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHc--CCCCCCCCCcceeee
Q 015450 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF--NGTPMPNGEQNFRLN 158 (406)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l--~~~~~~~~~~~~~~~ 158 (406)
+++|||+|||+++++++|+++|+.||.|.+|.+++++ +||||+|.+.++|++|++.+ ++..+.+ +.+++.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l~g--~~l~v~ 73 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYIRG--QPAFFN 73 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceEcC--eEEEEE
Confidence 7899999999999999999999999999999998654 79999999999999999875 5556644 566666
Q ss_pred ecccCCCCCC--------CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHH
Q 015450 159 WASFGAGEKR--------DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230 (406)
Q Consensus 159 ~~~~~~~~~~--------~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~ 230 (406)
|+........ ......+|||+||++++++++|+++| +.||.|.++.++.+.. +++|||+|.+.++|.
T Consensus 74 ~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F-~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~ 148 (481)
T TIGR01649 74 YSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIF-NPYGKVLRIVTFTKNN----VFQALVEFESVNSAQ 148 (481)
T ss_pred ecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHH-hccCCEEEEEEEecCC----ceEEEEEECCHHHHH
Confidence 6543321111 11122479999999999999999999 8999999999876542 468999999999999
Q ss_pred HHHHHhcCccccC--cceEecccCCCCcc-------cccccCCcc-----------------------------------
Q 015450 231 RAMTEMNGVFCST--RPMRIGPATNKKTV-------SASYQNSQV----------------------------------- 266 (406)
Q Consensus 231 ~a~~~~~~~~~~g--~~i~v~~~~~~~~~-------~~~~~~~~~----------------------------------- 266 (406)
+|++.||+..+.+ +.|+|.++....-. ...+.....
T Consensus 149 ~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 228 (481)
T TIGR01649 149 HAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSH 228 (481)
T ss_pred HHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccC
Confidence 9999999999965 46777776642210 000000000
Q ss_pred --------------------------------------ccCCCCCCCceEEEcCCCC-CCCHHHHHHHhccCCcEEEEEe
Q 015450 267 --------------------------------------AQSDDDPNNTTVFVGNLDS-IVTDEHLRELFSQYGQLVHVKI 307 (406)
Q Consensus 267 --------------------------------------~~~~~~~~~~~l~V~nlp~-~~t~e~l~~~F~~~G~i~~v~i 307 (406)
........+++|||+||+. .+++++|+++|+.||.|.+|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki 308 (481)
T TIGR01649 229 GGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKF 308 (481)
T ss_pred CCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 0000123568999999998 6999999999999999999999
Q ss_pred eCC-CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCC
Q 015450 308 PAG-KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350 (406)
Q Consensus 308 ~~~-~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 350 (406)
.++ +++|||+|.+.++|.+|+..|||..|.|+.|+|++++...
T Consensus 309 ~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 309 MKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred EeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 876 6899999999999999999999999999999999987554
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=4e-39 Score=310.37 Aligned_cols=270 Identities=23% Similarity=0.380 Sum_probs=221.2
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.....++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|.+||. |+|..+.+..+.+.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 44568899999999999999999999999999999999999999999999999999999999997 89999987766665
Q ss_pred eeecccCCCC------CCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHH
Q 015450 157 LNWASFGAGE------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230 (406)
Q Consensus 157 ~~~~~~~~~~------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~ 230 (406)
.......... .......++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f-~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIF-EPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 5433221111 0111236899999999999999999999 89999999999999989999999999999999999
Q ss_pred HHHHHhcCccccCcceEecccCCCCcccccc------------------------------cC---------C-------
Q 015450 231 RAMTEMNGVFCSTRPMRIGPATNKKTVSASY------------------------------QN---------S------- 264 (406)
Q Consensus 231 ~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~------------------------------~~---------~------- 264 (406)
.|+..|++..+.|+.|.|.++.......... .. .
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALM 322 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhh
Confidence 9999999999999999999965321110000 00 0
Q ss_pred -----------------------------ccccCCCCCCCceEEEcCCCCCCC----------HHHHHHHhccCCcEEEE
Q 015450 265 -----------------------------QVAQSDDDPNNTTVFVGNLDSIVT----------DEHLRELFSQYGQLVHV 305 (406)
Q Consensus 265 -----------------------------~~~~~~~~~~~~~l~V~nlp~~~t----------~e~l~~~F~~~G~i~~v 305 (406)
...........++|+|.||-...+ .+||++.|++||.|++|
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v 402 (457)
T TIGR01622 323 QKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHI 402 (457)
T ss_pred ccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEE
Confidence 000000224568899999965543 37899999999999999
Q ss_pred Eee--CCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 306 KIP--AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 306 ~i~--~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
.|. ...|++||+|.+.++|.+|++.|||..|+|+.|.|.+...
T Consensus 403 ~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 403 YVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred EEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 986 3479999999999999999999999999999999998754
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.8e-38 Score=304.44 Aligned_cols=260 Identities=22% Similarity=0.344 Sum_probs=212.3
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 159 (406)
...+|+|.||+..+|+++|+++|+.||.|.+|.++++.. +++|||+|.+.++|.+|++.|||..|.++.+.++++|
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEE
Confidence 345799999999999999999999999999999987642 3689999999999999999999999987766777766
Q ss_pred cccCCC-------------------CC-----------------------------------------------------
Q 015450 160 ASFGAG-------------------EK----------------------------------------------------- 167 (406)
Q Consensus 160 ~~~~~~-------------------~~----------------------------------------------------- 167 (406)
+..... +.
T Consensus 171 sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
T TIGR01649 171 AKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSR 250 (481)
T ss_pred ecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCC
Confidence 543110 00
Q ss_pred -------------------CCCCCCceEEEcCCCc-cccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHH
Q 015450 168 -------------------RDDTPDHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227 (406)
Q Consensus 168 -------------------~~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~ 227 (406)
.....+.+|||+||++ .+++++|+++| +.||.|.+++++.+. +|+|||+|.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF-~~yG~V~~vki~~~~-----~g~afV~f~~~~ 324 (481)
T TIGR01649 251 YRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLF-CVYGNVERVKFMKNK-----KETALIEMADPY 324 (481)
T ss_pred CcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHH-HhcCCeEEEEEEeCC-----CCEEEEEECCHH
Confidence 0012456999999998 69999999999 899999999998874 799999999999
Q ss_pred HHHHHHHHhcCccccCcceEecccCCCCccccc-------------ccCCc--cc-------cCCCCCCCceEEEcCCCC
Q 015450 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSAS-------------YQNSQ--VA-------QSDDDPNNTTVFVGNLDS 285 (406)
Q Consensus 228 ~a~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~-------------~~~~~--~~-------~~~~~~~~~~l~V~nlp~ 285 (406)
+|..|+..||+..+.|+.|+|.++......... ..... .. .......+++|||+|||.
T Consensus 325 ~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~ 404 (481)
T TIGR01649 325 QAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPL 404 (481)
T ss_pred HHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCC
Confidence 999999999999999999999987654221110 00000 00 001124568999999999
Q ss_pred CCCHHHHHHHhccCCc--EEEEEeeCC----CeEEEEEeCChHHHHHHHHHhcCCccCCcE------EEEeeccCC
Q 015450 286 IVTDEHLRELFSQYGQ--LVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGTQLGGQN------IRLSWGRSP 349 (406)
Q Consensus 286 ~~t~e~l~~~F~~~G~--i~~v~i~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~------l~v~~~~~~ 349 (406)
++++++|+++|+.||. |+.|++... +++|||+|++.++|.+||..||+..|+++. |+|+|++++
T Consensus 405 ~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 405 SVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 9999999999999998 888988544 589999999999999999999999999985 999999854
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=9.7e-38 Score=304.93 Aligned_cols=265 Identities=20% Similarity=0.278 Sum_probs=206.6
Q ss_pred CCCCCCcceeeecCCCcccCHHHHhhhhhcc------------cceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHH
Q 015450 75 QGQPGEIRTLWIGDLQYWMDETYLNTCFAHT------------GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142 (406)
Q Consensus 75 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~------------G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~ 142 (406)
+......++|||+|||.++|+++|+++|..+ +.|..+.+ ++++|||||+|.+.++|..||+
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~- 241 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA- 241 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-
Confidence 3456778999999999999999999999975 22334433 3456999999999999999995
Q ss_pred cCCCCCCCCCcceeeeeccc--C--------C-------------CCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCC
Q 015450 143 FNGTPMPNGEQNFRLNWASF--G--------A-------------GEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199 (406)
Q Consensus 143 l~~~~~~~~~~~~~~~~~~~--~--------~-------------~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g 199 (406)
|+|..+.+..+.|....... . . .........++|||+||+..+++++|+++| +.||
T Consensus 242 l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f-~~~G 320 (509)
T TIGR01642 242 LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELL-ESFG 320 (509)
T ss_pred CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcC
Confidence 99988877554443211100 0 0 000112345799999999999999999999 8999
Q ss_pred CcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCCcccccccCC-------------cc
Q 015450 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNS-------------QV 266 (406)
Q Consensus 200 ~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~-------------~~ 266 (406)
.|..+.++.+..+|.++|||||+|.+.++|..|+..|++..+.|+.|.|.++............. ..
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQS 400 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhh
Confidence 99999999999899999999999999999999999999999999999999986543221110000 00
Q ss_pred ccCCCCCCCceEEEcCCCCC--C--------CHHHHHHHhccCCcEEEEEeeCC---------CeEEEEEeCChHHHHHH
Q 015450 267 AQSDDDPNNTTVFVGNLDSI--V--------TDEHLRELFSQYGQLVHVKIPAG---------KRCGFVQFADRSCAEEA 327 (406)
Q Consensus 267 ~~~~~~~~~~~l~V~nlp~~--~--------t~e~l~~~F~~~G~i~~v~i~~~---------~g~afV~F~~~~~A~~A 327 (406)
........+++|+|.||... + ..++|+++|++||.|++|.|.+. +|+|||+|.+.++|.+|
T Consensus 401 ~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A 480 (509)
T TIGR01642 401 ILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKA 480 (509)
T ss_pred hccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHH
Confidence 00112345788999999642 1 23689999999999999999753 58999999999999999
Q ss_pred HHHhcCCccCCcEEEEeecc
Q 015450 328 LRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 328 ~~~l~g~~~~g~~l~v~~~~ 347 (406)
+..|||.+|+|+.|.|.|..
T Consensus 481 ~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 481 MEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred HHHcCCCEECCeEEEEEEeC
Confidence 99999999999999999865
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.9e-38 Score=275.77 Aligned_cols=270 Identities=23% Similarity=0.454 Sum_probs=229.8
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCC-CCCCCCCcce
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG-TPMPNGEQNF 155 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~-~~~~~~~~~~ 155 (406)
++.+.-+|||+-||..++|.||+++|++||.|.+|.|++|+.++.++|||||+|.+.++|.+|+..|++ +.+.|....|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 346778899999999999999999999999999999999999999999999999999999999998866 5678888888
Q ss_pred eeeecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHH
Q 015450 156 RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (406)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 235 (406)
.+..+... +.+-..+++|||+-|+..++|++++++| ++||.|++|.|++|. .+.+||||||.|.+.+.|..|++.
T Consensus 110 qvk~Ad~E---~er~~~e~KLFvg~lsK~~te~evr~iF-s~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika 184 (510)
T KOG0144|consen 110 QVKYADGE---RERIVEERKLFVGMLSKQCTENEVREIF-SRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKA 184 (510)
T ss_pred eecccchh---hhccccchhhhhhhccccccHHHHHHHH-HhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHh
Confidence 88776533 3333567899999999999999999999 899999999999997 789999999999999999999999
Q ss_pred hcCcc-cc--CcceEecccCCCCcccc-----------------------------------------------------
Q 015450 236 MNGVF-CS--TRPMRIGPATNKKTVSA----------------------------------------------------- 259 (406)
Q Consensus 236 ~~~~~-~~--g~~i~v~~~~~~~~~~~----------------------------------------------------- 259 (406)
||+.. +. ..+|.|+|++.++....
T Consensus 185 ~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~ 264 (510)
T KOG0144|consen 185 LNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLP 264 (510)
T ss_pred hccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCccccccc
Confidence 99865 33 46889999998776600
Q ss_pred ---------------------------------------ccc-------------CC-----------------------
Q 015450 260 ---------------------------------------SYQ-------------NS----------------------- 264 (406)
Q Consensus 260 ---------------------------------------~~~-------------~~----------------------- 264 (406)
+.. ..
T Consensus 265 ~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~ 344 (510)
T KOG0144|consen 265 PLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPAN 344 (510)
T ss_pred CCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchh
Confidence 000 00
Q ss_pred ---------------------------------------------------------------------ccccCCCCCCC
Q 015450 265 ---------------------------------------------------------------------QVAQSDDDPNN 275 (406)
Q Consensus 265 ---------------------------------------------------------------------~~~~~~~~~~~ 275 (406)
......+.+..
T Consensus 345 ~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeG 424 (510)
T KOG0144|consen 345 YNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEG 424 (510)
T ss_pred cccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCc
Confidence 00000011566
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCC
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 349 (406)
..|||.+||.++-+.+|...|..||.|++.++.-| |.|+||.|++..+|..||..|||..|+.++++|...+.+
T Consensus 425 anlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 425 ANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred cceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 78999999999999999999999999998877544 689999999999999999999999999999999998765
Q ss_pred CC
Q 015450 350 SN 351 (406)
Q Consensus 350 ~~ 351 (406)
.+
T Consensus 505 ~n 506 (510)
T KOG0144|consen 505 NN 506 (510)
T ss_pred CC
Confidence 54
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.6e-37 Score=293.67 Aligned_cols=174 Identities=17% Similarity=0.324 Sum_probs=152.8
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
...++|||+||++++++++|+++|++||.|.+|+++.|+.+++++|||||+|.+.++|++|++.|||..+.++.+.+...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999998776655432
Q ss_pred ecccCCC-----CCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHH
Q 015450 159 WASFGAG-----EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (406)
Q Consensus 159 ~~~~~~~-----~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 233 (406)
....... ........++|||+||+.++++++|+++| +.||.|.++++..+..+++++|||||+|.+.++|.+|+
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lF-s~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI 263 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 263 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHH-hhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHH
Confidence 1111100 01122345799999999999999999999 89999999999999989999999999999999999999
Q ss_pred HHhcCccccCcceEecccCC
Q 015450 234 TEMNGVFCSTRPMRIGPATN 253 (406)
Q Consensus 234 ~~~~~~~~~g~~i~v~~~~~ 253 (406)
+.||+..++|+.|+|.++..
T Consensus 264 ~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 264 ASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHhCCCeeCCeEEEEEecCC
Confidence 99999999999999988774
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.1e-36 Score=268.88 Aligned_cols=268 Identities=22% Similarity=0.364 Sum_probs=219.9
Q ss_pred cceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeec
Q 015450 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (406)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~ 160 (406)
..||||++||++++.++|.++|+.+|.|..|.++.+..++.++||+||.|.=.+++++|++.+++..+.++.+.+.....
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999877666654433
Q ss_pred ccCCCC--------------------CCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEE
Q 015450 161 SFGAGE--------------------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGF 220 (406)
Q Consensus 161 ~~~~~~--------------------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~af 220 (406)
...... .....+...|+|+||||.+.+.+|..+| +.||.|..+.|.... .++..||||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vF-s~~G~V~Ei~IP~k~-dgklcGFaF 162 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVF-SNFGKVVEIVIPRKK-DGKLCGFAF 162 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHH-hhcceEEEEEcccCC-CCCccceEE
Confidence 222110 0112336789999999999999999999 999999999998665 555559999
Q ss_pred EEecCHHHHHHHHHHhcCccccCcceEecccCCCCcccccc---------------------------------------
Q 015450 221 VRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASY--------------------------------------- 261 (406)
Q Consensus 221 v~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~--------------------------------------- 261 (406)
|.|....+|..|++.+|+..|+||+|-|.|+..+.......
T Consensus 163 V~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ede 242 (678)
T KOG0127|consen 163 VQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDE 242 (678)
T ss_pred EEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccc
Confidence 99999999999999999999999999999998765441100
Q ss_pred c--C----------C------ccc------------------cCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEE
Q 015450 262 Q--N----------S------QVA------------------QSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 305 (406)
Q Consensus 262 ~--~----------~------~~~------------------~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v 305 (406)
. . . ... ..++.....+|||.||++++|+|+|.++|++||.|..+
T Consensus 243 Ee~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya 322 (678)
T KOG0127|consen 243 EETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYA 322 (678)
T ss_pred ccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeE
Confidence 0 0 0 000 00011223799999999999999999999999999999
Q ss_pred EeeC------CCeEEEEEeCChHHHHHHHHHh-----cC-CccCCcEEEEeeccCCC
Q 015450 306 KIPA------GKRCGFVQFADRSCAEEALRML-----NG-TQLGGQNIRLSWGRSPS 350 (406)
Q Consensus 306 ~i~~------~~g~afV~F~~~~~A~~A~~~l-----~g-~~~~g~~l~v~~~~~~~ 350 (406)
.|.. ++|+|||.|.+..+|.+||... .| ..|+||.|.|..+..+.
T Consensus 323 ~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 323 IIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred EEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 8854 3799999999999999999976 23 56899999999887543
No 15
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.6e-35 Score=268.33 Aligned_cols=171 Identities=27% Similarity=0.475 Sum_probs=153.2
Q ss_pred CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceE
Q 015450 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (406)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~ 247 (406)
......++|||++|++++++++|+++| +.||.|.+|+|+.|..+++++|||||+|.+.++|++|++.|++..+.++.|+
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF-~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALF-RTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 345567899999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCCh
Q 015450 248 IGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADR 321 (406)
Q Consensus 248 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~ 321 (406)
|.++..... ....++|||+||+.++|+++|+++|++||.|++|+|.++ |++|||+|++.
T Consensus 181 V~~a~p~~~---------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 181 VSYARPGGE---------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred eeccccccc---------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 998764321 123568999999999999999999999999999999765 48999999999
Q ss_pred HHHHHHHHHhcCCccCC--cEEEEeeccCCCCCCC
Q 015450 322 SCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQA 354 (406)
Q Consensus 322 ~~A~~A~~~l~g~~~~g--~~l~v~~~~~~~~~~~ 354 (406)
++|++||+.||+..|.+ +.|+|+|++...+...
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~~~ 280 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVRLAEEHGKAKA 280 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCccccccc
Confidence 99999999999999866 6899999987655443
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3.6e-32 Score=246.48 Aligned_cols=172 Identities=26% Similarity=0.470 Sum_probs=152.7
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.....++|||+|||+++|+++|+++|+.||.|++|+|++|..+++++|||||+|.++++|++|++.|++..+.++ .|+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr--~i~ 180 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK--RLK 180 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc--eee
Confidence 445688999999999999999999999999999999999999999999999999999999999999999999665 455
Q ss_pred eeecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHh
Q 015450 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (406)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 236 (406)
+.++... ......++|||+||++++++++|+++| +.||.|..++++.+..++++++||||+|.+.++|++|++.|
T Consensus 181 V~~a~p~----~~~~~~~~lfV~nLp~~vtee~L~~~F-~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 181 VSYARPG----GESIKDTNLYVTNLPRTITDDQLDTIF-GKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred eeccccc----ccccccceeEEeCCCCcccHHHHHHHH-HhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 5554432 123346789999999999999999999 89999999999999999999999999999999999999999
Q ss_pred cCccccC--cceEecccCCCC
Q 015450 237 NGVFCST--RPMRIGPATNKK 255 (406)
Q Consensus 237 ~~~~~~g--~~i~v~~~~~~~ 255 (406)
++..+.+ +.|+|.++....
T Consensus 256 ng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CCCccCCCceeEEEEECCccc
Confidence 9998876 578888777543
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-32 Score=247.94 Aligned_cols=261 Identities=26% Similarity=0.473 Sum_probs=222.8
Q ss_pred eeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeeccc
Q 015450 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASF 162 (406)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~ 162 (406)
.|||.||+.+++..+|.++|+.||.|++|++..+. .| ++|| ||+|+++++|++|++.+||..+.++.+.+-+.....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 39999999999999999999999999999999997 35 9999 999999999999999999999988777765554433
Q ss_pred CCCCCC--CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCcc
Q 015450 163 GAGEKR--DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (406)
Q Consensus 163 ~~~~~~--~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 240 (406)
...... .......+++.++..++++++|.+.| +.+|.|.++.++.+. .+++++|+||.|.+.++|..|+..+++..
T Consensus 155 er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f-~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~ 232 (369)
T KOG0123|consen 155 EREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLF-SAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKI 232 (369)
T ss_pred hhcccccchhhhhhhhheeccccccchHHHHHhh-cccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCc
Confidence 222211 23445679999999999999999999 999999999999987 56699999999999999999999999999
Q ss_pred ccCcceEecccCCCCcccccccCC---ccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----Ce
Q 015450 241 CSTRPMRIGPATNKKTVSASYQNS---QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KR 312 (406)
Q Consensus 241 ~~g~~i~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g 312 (406)
+.+..+.|..+..+.......... .............|||.||+..++++.|+++|+.||.|++++|..+ +|
T Consensus 233 ~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG 312 (369)
T KOG0123|consen 233 FGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKG 312 (369)
T ss_pred CCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccc
Confidence 999999998888744433222221 1222333556788999999999999999999999999999998653 89
Q ss_pred EEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 313 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 313 ~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
++||+|.+.++|.+|+..+++..+.++.|.|.++..
T Consensus 313 ~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr 348 (369)
T KOG0123|consen 313 FGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQR 348 (369)
T ss_pred eEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhh
Confidence 999999999999999999999999999999999883
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-31 Score=242.15 Aligned_cols=239 Identities=29% Similarity=0.523 Sum_probs=211.9
Q ss_pred ceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeecc
Q 015450 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (406)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~ 161 (406)
..|||+ +++|+.+|.++|+.+|.|+++++++|. + +.|||||.|.++++|++|++++|...+ .++.+++.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~--~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVL--KGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCccc--CCcEEEeehhc
Confidence 468998 999999999999999999999999998 6 999999999999999999999999998 45677888776
Q ss_pred cCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccc
Q 015450 162 FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (406)
Q Consensus 162 ~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~ 241 (406)
..... +||.||+.+++..+|.+.| +.||.|.+|++..+. .| ++|| ||+|+++++|.+|+..+||..+
T Consensus 74 rd~~~---------~~i~nl~~~~~~~~~~d~f-~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll 140 (369)
T KOG0123|consen 74 RDPSL---------VFIKNLDESIDNKSLYDTF-SEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLL 140 (369)
T ss_pred cCCce---------eeecCCCcccCcHHHHHHH-HhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCccc
Confidence 54332 9999999999999999999 999999999999997 44 8999 9999999999999999999999
Q ss_pred cCcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEE
Q 015450 242 STRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFV 316 (406)
Q Consensus 242 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV 316 (406)
.++.|.|.....+......... ....-..++|.|+..+++++.|+++|+.+|.|.++.+..+ ++++||
T Consensus 141 ~~kki~vg~~~~~~er~~~~~~-------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv 213 (369)
T KOG0123|consen 141 NGKKIYVGLFERKEEREAPLGE-------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFV 213 (369)
T ss_pred CCCeeEEeeccchhhhcccccc-------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccce
Confidence 9999999888776654332111 2233567899999999999999999999999999999764 789999
Q ss_pred EeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 317 QFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 317 ~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
.|++.++|..|+..|++..+++..+.|..+..
T Consensus 214 ~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 214 NFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred eecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 99999999999999999999999999887765
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2e-30 Score=246.78 Aligned_cols=176 Identities=19% Similarity=0.436 Sum_probs=152.4
Q ss_pred CCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEeccc
Q 015450 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (406)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~ 251 (406)
..++|||+||++++++++|+++| +.||.|.+++++.|+.+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF-~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHH-HccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45789999999999999999999 89999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHH
Q 015450 252 TNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAE 325 (406)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~ 325 (406)
.......... ..........++|||+||+.++++++|+++|+.||.|++++|.++ ||||||+|.+.++|.
T Consensus 185 ~~~p~a~~~~----~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 185 SNMPQAQPII----DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred cccccccccc----ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 4432211100 001112234579999999999999999999999999999999754 789999999999999
Q ss_pred HHHHHhcCCccCCcEEEEeeccCCCCC
Q 015450 326 EALRMLNGTQLGGQNIRLSWGRSPSNK 352 (406)
Q Consensus 326 ~A~~~l~g~~~~g~~l~v~~~~~~~~~ 352 (406)
+|+..||+..|+|+.|+|.++..+...
T Consensus 261 kAI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 261 EAIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHHHhCCCeeCCeEEEEEecCCCccc
Confidence 999999999999999999999875544
No 20
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.97 E-value=5.3e-31 Score=238.08 Aligned_cols=276 Identities=19% Similarity=0.323 Sum_probs=220.1
Q ss_pred CCCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcce
Q 015450 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (406)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~ 155 (406)
.+.+..++||+--|...++..+|.+||+.+|.|.+|+++.|+.+++++|.|||+|.+.+++-.||. |.|..+.+..+.+
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 356778999999999999999999999999999999999999999999999999999999999995 8998887776666
Q ss_pred eeeecccCCC--------CCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHH
Q 015450 156 RLNWASFGAG--------EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227 (406)
Q Consensus 156 ~~~~~~~~~~--------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~ 227 (406)
...-+..... .+....+...|||+||.+++++++|+.+| +.||.|..|.+.+|..||+++||+||+|.+.+
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~if-epfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIF-EPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhc-cCcccceeeeeccccccccccCcceEEEecHH
Confidence 6554332210 01112233449999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccCcceEecccCCCCccccccc----------------CC---------------------------
Q 015450 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ----------------NS--------------------------- 264 (406)
Q Consensus 228 ~a~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~----------------~~--------------------------- 264 (406)
+|..|++.||+..+.|+.|+|.....+........ ..
T Consensus 332 ~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~ 411 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLL 411 (549)
T ss_pred HHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHh
Confidence 99999999999999999999865554333321100 00
Q ss_pred ----------cc----ccC-------CCCCCCceEEEcCCCCCCC----------HHHHHHHhccCCcEEEEEeeCCC-e
Q 015450 265 ----------QV----AQS-------DDDPNNTTVFVGNLDSIVT----------DEHLRELFSQYGQLVHVKIPAGK-R 312 (406)
Q Consensus 265 ----------~~----~~~-------~~~~~~~~l~V~nlp~~~t----------~e~l~~~F~~~G~i~~v~i~~~~-g 312 (406)
.. ... .-+..+.++.|.|+=...+ .|||.+.+++||.|++|.+.++. |
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g 491 (549)
T KOG0147|consen 412 LAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAG 491 (549)
T ss_pred ccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCc
Confidence 00 000 0013455666666533221 27899999999999999998775 9
Q ss_pred EEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCCCC
Q 015450 313 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353 (406)
Q Consensus 313 ~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 353 (406)
+.||.|.+.++|..|+.+|||.+|.|+.|..+|-.......
T Consensus 492 ~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~ 532 (549)
T KOG0147|consen 492 CVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHS 532 (549)
T ss_pred eEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhh
Confidence 99999999999999999999999999999999876544433
No 21
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2e-30 Score=226.91 Aligned_cols=174 Identities=25% Similarity=0.482 Sum_probs=153.9
Q ss_pred CCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccc---cC
Q 015450 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC---ST 243 (406)
Q Consensus 167 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~---~g 243 (406)
+..+...-++||+-+|..++|.||+++| +.||.|.+|.|++|+.++.++|||||.|.+.++|.+|+.+|++... ..
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lF-e~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELF-EKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH 106 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHH-HHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCC
Confidence 3445666789999999999999999999 8999999999999999999999999999999999999999987553 34
Q ss_pred cceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEe
Q 015450 244 RPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQF 318 (406)
Q Consensus 244 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F 318 (406)
.+|.|++++.....- ...++|||+-|+..+||++|+++|++||.|++|.|.+| ||||||+|
T Consensus 107 ~pvqvk~Ad~E~er~--------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~f 172 (510)
T KOG0144|consen 107 HPVQVKYADGERERI--------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKF 172 (510)
T ss_pred cceeecccchhhhcc--------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEE
Confidence 678888888765431 35789999999999999999999999999999999886 89999999
Q ss_pred CChHHHHHHHHHhcCCc-cCCc--EEEEeeccCCCCCCCC
Q 015450 319 ADRSCAEEALRMLNGTQ-LGGQ--NIRLSWGRSPSNKQAQ 355 (406)
Q Consensus 319 ~~~~~A~~A~~~l~g~~-~~g~--~l~v~~~~~~~~~~~~ 355 (406)
++.+.|..||+.|||.. +.|+ .|.|+||.+.+.+..+
T Consensus 173 stke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 173 STKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred ehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHH
Confidence 99999999999999986 6665 7999999987776543
No 22
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=8.5e-30 Score=218.26 Aligned_cols=265 Identities=17% Similarity=0.283 Sum_probs=211.4
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 159 (406)
-.|+|||+.|.+++.|+.|+..|..||.|.+|.+..|..|++++|||||+|+-+|.|..|++.+||..+.++.+.+..-.
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999976655444221
Q ss_pred cccCCC-----CCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHH
Q 015450 160 ASFGAG-----EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (406)
Q Consensus 160 ~~~~~~-----~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 234 (406)
.-.... ...+...-+++||..+..+.++++|+..| +.||.|..|.+-+++..+.+|||+|++|.+..+..+|+.
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVF-EAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHH-HhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 111100 01223345789999999999999999999 899999999999999888999999999999999999999
Q ss_pred HhcCccccCcceEecccCCCCcccc-------------------------------------------------------
Q 015450 235 EMNGVFCSTRPMRIGPATNKKTVSA------------------------------------------------------- 259 (406)
Q Consensus 235 ~~~~~~~~g~~i~v~~~~~~~~~~~------------------------------------------------------- 259 (406)
.+|-+.++|..++|..+......-.
T Consensus 271 sMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~ 350 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLG 350 (544)
T ss_pred hcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCC
Confidence 9999999999999977654332200
Q ss_pred -------------cccCCc---------------------------------cc-----------------------cC-
Q 015450 260 -------------SYQNSQ---------------------------------VA-----------------------QS- 269 (406)
Q Consensus 260 -------------~~~~~~---------------------------------~~-----------------------~~- 269 (406)
...... .. ..
T Consensus 351 ~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~ 430 (544)
T KOG0124|consen 351 TLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGS 430 (544)
T ss_pred CccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCc
Confidence 000000 00 00
Q ss_pred ----------CCCCCCceEEEcCCC--CCCC---HHHHHHHhccCCcEEEEEeeCCC----------eEEEEEeCChHHH
Q 015450 270 ----------DDDPNNTTVFVGNLD--SIVT---DEHLRELFSQYGQLVHVKIPAGK----------RCGFVQFADRSCA 324 (406)
Q Consensus 270 ----------~~~~~~~~l~V~nlp--~~~t---~e~l~~~F~~~G~i~~v~i~~~~----------g~afV~F~~~~~A 324 (406)
-....+++|.++|+- .+++ +.+|++.|.+||.|.+|.|-..+ -.-||+|....++
T Consensus 431 sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~ 510 (544)
T KOG0124|consen 431 SARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASET 510 (544)
T ss_pred cHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHH
Confidence 001456778888864 3343 46899999999999999985442 1459999999999
Q ss_pred HHHHHHhcCCccCCcEEEEee
Q 015450 325 EEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 325 ~~A~~~l~g~~~~g~~l~v~~ 345 (406)
.+|+.+|+|+.|+||++..+.
T Consensus 511 ~rak~ALdGRfFgGr~VvAE~ 531 (544)
T KOG0124|consen 511 HRAKQALDGRFFGGRKVVAEV 531 (544)
T ss_pred HHHHHhhccceecCceeehhh
Confidence 999999999999999987654
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=1.6e-28 Score=233.73 Aligned_cols=213 Identities=17% Similarity=0.226 Sum_probs=168.4
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccc-eeEEEEEe-eCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIR-NKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~-v~~~~~~~-~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
+.++|||+|||.++++++|.++|++++. ++++.+.. ...+++++|||||+|.+.++|..|++.|+...+......|.+
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4688999999999999999999999874 55554433 234578899999999999999999998876554445667888
Q ss_pred eecccCCCCCC-CCCCCceEEEcCCCccccHHHHHHHHHhhC--CCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHH
Q 015450 158 NWASFGAGEKR-DDTPDHTIFVGDLAADVTDYMLQETFRARY--PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (406)
Q Consensus 158 ~~~~~~~~~~~-~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~--g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 234 (406)
+|+........ .....++|||+||++++++++|+++| +.| |.|+.|+++ ++||||+|.+.++|++|++
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F-~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSF-SEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHH-HhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHH
Confidence 88876543322 23345789999999999999999999 889 999988764 4699999999999999999
Q ss_pred HhcCccccCcceEecccCCCCcccccc-------------cCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCc
Q 015450 235 EMNGVFCSTRPMRIGPATNKKTVSASY-------------QNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQ 301 (406)
Q Consensus 235 ~~~~~~~~g~~i~v~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~ 301 (406)
.||+..|.|+.|+|.++.......... ..........+..+.+++++|++++.+++.+.++|..+|.
T Consensus 288 ~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~ 367 (578)
T TIGR01648 288 ELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGP 367 (578)
T ss_pred HhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcc
Confidence 999999999999999998754331100 0001112233456889999999999999999999988774
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.5e-29 Score=206.34 Aligned_cols=167 Identities=30% Similarity=0.555 Sum_probs=153.0
Q ss_pred cceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeec
Q 015450 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (406)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~ 160 (406)
.--|||+.|..+++.++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|++||..+||..| ..+.||-+|+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl--G~R~IRTNWA 139 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL--GRRTIRTNWA 139 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee--ccceeecccc
Confidence 44589999999999999999999999999999999999999999999999999999999999999888 6788999999
Q ss_pred ccCCCCC------------CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHH
Q 015450 161 SFGAGEK------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228 (406)
Q Consensus 161 ~~~~~~~------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~ 228 (406)
..+..+. .....+++||+||++..++|++|++.| +.||.|.+|++.++ +||+||.|++.|+
T Consensus 140 TRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~F-s~fG~I~EVRvFk~------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 140 TRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTF-SPFGPIQEVRVFKD------QGYAFVRFETKEA 212 (321)
T ss_pred ccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhc-ccCCcceEEEEecc------cceEEEEecchhh
Confidence 8765332 234577899999999999999999999 99999999999988 7999999999999
Q ss_pred HHHHHHHhcCccccCcceEecccCCCCc
Q 015450 229 QLRAMTEMNGVFCSTRPMRIGPATNKKT 256 (406)
Q Consensus 229 a~~a~~~~~~~~~~g~~i~v~~~~~~~~ 256 (406)
|.+||..+|+.++.|..++..|-+....
T Consensus 213 AahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 213 AAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHHHHhcCceeCceEEEEeccccCCC
Confidence 9999999999999999999998776543
No 25
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=1.6e-28 Score=228.93 Aligned_cols=176 Identities=26% Similarity=0.443 Sum_probs=155.6
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 159 (406)
..++|||+|||.++++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|+.|++.|||..+.+....+++.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999998889999999999999999999999999999988777777777
Q ss_pred cccCCCCC------------------------------------------------------------------------
Q 015450 160 ASFGAGEK------------------------------------------------------------------------ 167 (406)
Q Consensus 160 ~~~~~~~~------------------------------------------------------------------------ 167 (406)
+.......
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 64221000
Q ss_pred ----------------CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHH
Q 015450 168 ----------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231 (406)
Q Consensus 168 ----------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ 231 (406)
.......+|||+||+.++++++|+++| +.||.|.+++|+.|..+++++|||||+|.+.++|..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F-~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLF-GPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHH-HhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 001112369999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHhcCccccCcceEecccCCCCc
Q 015450 232 AMTEMNGVFCSTRPMRIGPATNKKT 256 (406)
Q Consensus 232 a~~~~~~~~~~g~~i~v~~~~~~~~ 256 (406)
|++.|||..++|+.|+|.|...+..
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999887653
No 26
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=5.7e-28 Score=224.41 Aligned_cols=259 Identities=21% Similarity=0.354 Sum_probs=205.2
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
..+..+.|+|+|||..+..++|..+|..||.|..+.+...- --++|+|.+..+|..|++.|....+... .+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G------~~aiv~fl~p~eAr~Afrklaysr~k~~--ply 452 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGG------TGAIVEFLNPLEARKAFRKLAYSRFKSA--PLY 452 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCccc------ceeeeeecCccchHHHHHHhchhhhccC--ccc
Confidence 34556789999999999999999999999999999544221 2499999999999999999887666332 222
Q ss_pred eeecccCC----------------C-------------------CC-----------CCCCCCceEEEcCCCccccHHHH
Q 015450 157 LNWASFGA----------------G-------------------EK-----------RDDTPDHTIFVGDLAADVTDYML 190 (406)
Q Consensus 157 ~~~~~~~~----------------~-------------------~~-----------~~~~~~~~l~v~~lp~~~~~~~l 190 (406)
+.|+.... . .. ......++|||.||.++++.++|
T Consensus 453 le~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l 532 (725)
T KOG0110|consen 453 LEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDL 532 (725)
T ss_pred cccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHH
Confidence 23321100 0 00 00112233999999999999999
Q ss_pred HHHHHhhCCCcceeEEEecCCC---CCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCCcccccccCCccc
Q 015450 191 QETFRARYPSTKGAKVVIDRLT---GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVA 267 (406)
Q Consensus 191 ~~~f~~~~g~v~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~ 267 (406)
...| ...|.|.++.|...+.. -.|.|||||+|.+.++|..|++.|+++.++|+.|.|.++..+..... ..
T Consensus 533 ~~~F-~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~------gK 605 (725)
T KOG0110|consen 533 EDLF-SKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTV------GK 605 (725)
T ss_pred HHHH-HhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccc------cc
Confidence 9999 78999999988654421 13569999999999999999999999999999999999882222111 12
Q ss_pred cCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEE
Q 015450 268 QSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNI 341 (406)
Q Consensus 268 ~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l 341 (406)
.......+++|+|.|||+..+..+|+++|..||.|.+|+|+.- +|||||+|-++++|.+|+.+|....|-||.|
T Consensus 606 ~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrL 685 (725)
T KOG0110|consen 606 KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRL 685 (725)
T ss_pred ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhh
Confidence 2233334789999999999999999999999999999999754 8899999999999999999999999999999
Q ss_pred EEeeccCCC
Q 015450 342 RLSWGRSPS 350 (406)
Q Consensus 342 ~v~~~~~~~ 350 (406)
.++|++...
T Consensus 686 VLEwA~~d~ 694 (725)
T KOG0110|consen 686 VLEWAKSDN 694 (725)
T ss_pred heehhccch
Confidence 999998654
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=2.3e-27 Score=228.63 Aligned_cols=174 Identities=30% Similarity=0.534 Sum_probs=150.6
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
....++|||+||+.++++++|+++| +.||.|..|.++.+..+++++|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F-~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFF-SKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 4457899999999999999999999 899999999999999999999999999999999999996 99999999999998
Q ss_pred ccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeC------CCeEEEEEeCChHH
Q 015450 250 PATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA------GKRCGFVQFADRSC 323 (406)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~------~~g~afV~F~~~~~ 323 (406)
++............. ........++|||+||+.++++++|+++|+.||.|.+|.|.. .+|+|||+|.+.++
T Consensus 164 ~~~~~~~~~~~~~~~---~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 164 SSQAEKNRAAKAATH---QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred ecchhhhhhhhcccc---cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 765443322111000 111123478999999999999999999999999999999974 37899999999999
Q ss_pred HHHHHHHhcCCccCCcEEEEeeccC
Q 015450 324 AEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 324 A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
|.+|+..|+|..|.|+.|+|.|+..
T Consensus 241 A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 241 AKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999999873
No 28
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.95 E-value=2.3e-26 Score=201.58 Aligned_cols=162 Identities=18% Similarity=0.331 Sum_probs=131.8
Q ss_pred CcceeeecCCCcccCHHHHhhhhh-cccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFA-HTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~-~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
..+.+||+|||+++.+.+|+++|. +.|+|+.|.+..|. +|+++|||.|||+++|.+++|++.||...+.++.+.++-+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 345699999999999999999995 57899999999996 7999999999999999999999999999998887666544
Q ss_pred eccc----------------------------C---------------CCCC---C------------------------
Q 015450 159 WASF----------------------------G---------------AGEK---R------------------------ 168 (406)
Q Consensus 159 ~~~~----------------------------~---------------~~~~---~------------------------ 168 (406)
.... + .+.+ +
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 3210 0 0000 0
Q ss_pred ---------CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCc
Q 015450 169 ---------DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (406)
Q Consensus 169 ---------~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 239 (406)
......++||+||...+..+.|.+.| ..-|.|..+.+-+|+ .+.++|++.++|...-+|.+||..+++.
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvf-gmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVF-GMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHh-ccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccC
Confidence 01123579999999999999999999 889999999998887 5689999999999999999999888754
Q ss_pred cccCc
Q 015450 240 FCSTR 244 (406)
Q Consensus 240 ~~~g~ 244 (406)
-+..+
T Consensus 280 g~~~~ 284 (608)
T KOG4212|consen 280 GLFDR 284 (608)
T ss_pred CCccc
Confidence 43333
No 29
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=197.99 Aligned_cols=201 Identities=21% Similarity=0.324 Sum_probs=157.1
Q ss_pred EEccHHHHHHHHHHcCCCCCCCCCcceeeeecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEe
Q 015450 129 EFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVI 208 (406)
Q Consensus 129 ~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~ 208 (406)
...+.++|.++|.+-.+..|....-.-+..-.... -+.......+.||||.||.++.|++|.-+| +..|.|-+++++.
T Consensus 40 ~~~~~eaal~al~E~tgy~l~ve~gqrk~ggPpP~-weg~~p~~G~EVfvGkIPrD~~EdeLvplf-EkiG~I~elRLMm 117 (506)
T KOG0117|consen 40 GVQSEEAALKALLERTGYTLVVENGQRKYGGPPPG-WEGPPPPRGCEVFVGKIPRDVFEDELVPLF-EKIGKIYELRLMM 117 (506)
T ss_pred ccccHHHHHHHHHHhcCceEEEeccccccCCCCCc-ccCCCCCCCceEEecCCCccccchhhHHHH-HhccceeeEEEee
Confidence 34457778888765554443211100000000000 111223456789999999999999999999 8999999999999
Q ss_pred cCCCCCCcceEEEEecCHHHHHHHHHHhcCccc-cCcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCC
Q 015450 209 DRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC-STRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIV 287 (406)
Q Consensus 209 ~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~-~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~ 287 (406)
|+.+|.+||||||.|.+.++|.+|++.||+.+| .|+.|.|..+. .+++|||+|||.+.
T Consensus 118 D~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv---------------------an~RLFiG~IPK~k 176 (506)
T KOG0117|consen 118 DPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV---------------------ANCRLFIGNIPKTK 176 (506)
T ss_pred cccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee---------------------ecceeEeccCCccc
Confidence 999999999999999999999999999999988 47888875544 46789999999999
Q ss_pred CHHHHHHHhccCC-cEEEEEe-------eCCCeEEEEEeCChHHHHHHHHHhcCCc--cCCcEEEEeeccCCCCC
Q 015450 288 TDEHLRELFSQYG-QLVHVKI-------PAGKRCGFVQFADRSCAEEALRMLNGTQ--LGGQNIRLSWGRSPSNK 352 (406)
Q Consensus 288 t~e~l~~~F~~~G-~i~~v~i-------~~~~g~afV~F~~~~~A~~A~~~l~g~~--~~g~~l~v~~~~~~~~~ 352 (406)
++|+|++.|++.+ .|++|.+ .++||||||+|.|+..|..|..+|-... +-|..+.|+||.+....
T Consensus 177 ~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 177 KKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred cHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC
Confidence 9999999999987 4777777 3458999999999999999999885444 67999999999986653
No 30
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.94 E-value=1.7e-24 Score=193.56 Aligned_cols=262 Identities=18% Similarity=0.251 Sum_probs=184.2
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.......|.+++|||++|++||.+||+.| .|+++.+.+ .+|+..|-|||+|.+++++++|+++ +...+ ..+-|.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~m--g~RYIE 79 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESM--GHRYIE 79 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHh--CCceEE
Confidence 34556779999999999999999999999 467766555 4699999999999999999999984 43344 223333
Q ss_pred eeecccC-------CCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHH
Q 015450 157 LNWASFG-------AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229 (406)
Q Consensus 157 ~~~~~~~-------~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a 229 (406)
|-.+... ............|-+++||+.+++++|.++| +-.-.|....++.....+++.|.|||.|++.+.|
T Consensus 80 Vf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FF-aGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 80 VFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFF-AGLEIVPDGILLPMDQRGRPTGEAFVQFESQESA 158 (510)
T ss_pred EEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHh-cCCcccccceeeeccCCCCcccceEEEecCHHHH
Confidence 3332211 1111222467789999999999999999999 6665555533344444778999999999999999
Q ss_pred HHHHHHhcCccccCcceEecccCCCCccccc--------------------------------c----------------
Q 015450 230 LRAMTEMNGVFCSTRPMRIGPATNKKTVSAS--------------------------------Y---------------- 261 (406)
Q Consensus 230 ~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~--------------------------------~---------------- 261 (406)
+.|+. -+...|..|.|.|..+......... .
T Consensus 159 e~Al~-rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~ 237 (510)
T KOG4211|consen 159 EIALG-RHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFS 237 (510)
T ss_pred HHHHH-HHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccc
Confidence 99996 4556666676666443321111000 0
Q ss_pred -----cC---------------Ccc--c--------cCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcE-EEEEeeCC
Q 015450 262 -----QN---------------SQV--A--------QSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL-VHVKIPAG 310 (406)
Q Consensus 262 -----~~---------------~~~--~--------~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i-~~v~i~~~ 310 (406)
.. ... . ..........++..+||++.++.+|.++|+..-.+ +.|.|..+
T Consensus 238 ~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~d 317 (510)
T KOG4211|consen 238 RYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPD 317 (510)
T ss_pred cCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCC
Confidence 00 000 0 00001223678889999999999999999976444 34445433
Q ss_pred ---CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 311 ---KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 311 ---~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
.+-|+|+|.|.++|..|+.+ ++..+..+.|.+...-
T Consensus 318 Gr~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~ 356 (510)
T KOG4211|consen 318 GRATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNG 356 (510)
T ss_pred CccCCcceeecccchhhHhhhcc-CCcccCcceeeecccC
Confidence 68999999999999999997 8888999998886553
No 31
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=1.8e-26 Score=179.55 Aligned_cols=174 Identities=28% Similarity=0.488 Sum_probs=153.2
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
.....+|||+||+..++++.|.++|-++|.|+++++.+|+.+...+|||||+|.++++|+-|++.||...+.+ +.|++
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg--rpIrv 83 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG--RPIRV 83 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC--ceeEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999999777755 55666
Q ss_pred eecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcce-eEEEecCCCCCCcceEEEEecCHHHHHHHHHHh
Q 015450 158 NWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG-AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (406)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 236 (406)
+.++ ..........++||+||...++|..|.+.| +.||.+.. -+++++..||.+++|+||.|.+.+.+.+|+..+
T Consensus 84 ~kas---~~~~nl~vganlfvgNLd~~vDe~~L~dtF-safG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 84 NKAS---AHQKNLDVGANLFVGNLDPEVDEKLLYDTF-SAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred Eecc---cccccccccccccccccCcchhHHHHHHHH-HhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHh
Confidence 5555 222333445799999999999999999999 89998665 478889999999999999999999999999999
Q ss_pred cCccccCcceEecccCCCCcc
Q 015450 237 NGVFCSTRPMRIGPATNKKTV 257 (406)
Q Consensus 237 ~~~~~~g~~i~v~~~~~~~~~ 257 (406)
++..+.++.+.|.++..+...
T Consensus 160 ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 160 NGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred ccchhcCCceEEEEEEecCCC
Confidence 999999999999998876654
No 32
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=4.1e-26 Score=187.08 Aligned_cols=168 Identities=26% Similarity=0.517 Sum_probs=151.0
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
......|.|.-||.++|+++++.+| ...|+|++|++++|+.+|.+.||+||.|.+.++|++|+..|||..+..+.|+|.
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF-~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLF-GSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHh-hcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 4455689999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHH
Q 015450 250 PATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSC 323 (406)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~ 323 (406)
++.+.... .....|||.+||..+|..||.++|++||.|..-+|..| ||.+||+|+..++
T Consensus 117 yARPSs~~---------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~E 181 (360)
T KOG0145|consen 117 YARPSSDS---------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIE 181 (360)
T ss_pred eccCChhh---------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhH
Confidence 99875442 33567999999999999999999999999877777543 8999999999999
Q ss_pred HHHHHHHhcCCccCCc--EEEEeeccCCCCCC
Q 015450 324 AEEALRMLNGTQLGGQ--NIRLSWGRSPSNKQ 353 (406)
Q Consensus 324 A~~A~~~l~g~~~~g~--~l~v~~~~~~~~~~ 353 (406)
|+.||..|||..-.|+ .|.|+|+..+..+.
T Consensus 182 Ae~AIk~lNG~~P~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 182 AEEAIKGLNGQKPSGCTEPITVKFANNPSQKT 213 (360)
T ss_pred HHHHHHhccCCCCCCCCCCeEEEecCCccccc
Confidence 9999999999986654 79999998876543
No 33
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=3.3e-25 Score=199.67 Aligned_cols=177 Identities=26% Similarity=0.444 Sum_probs=154.7
Q ss_pred ceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCC
Q 015450 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (406)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~ 253 (406)
.||||++||++++.++|.++| +.+|.|..+.++.+..++.++||+||.|.-.+++.+|+...++..|.|+.|+|..+..
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~F-S~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFF-SYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred ceEEEecCCCccchhHHHHhh-hcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 799999999999999999999 8999999999999999999999999999999999999999999999999999999987
Q ss_pred CCcccccccC--C---------ccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEE
Q 015450 254 KKTVSASYQN--S---------QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQ 317 (406)
Q Consensus 254 ~~~~~~~~~~--~---------~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~ 317 (406)
+......... . .......+....+|+|.|||+.+...+|+.+|+.||.|.+|.|++. .|||||.
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEE
Confidence 7665421100 0 0001111233688999999999999999999999999999999865 4899999
Q ss_pred eCChHHHHHHHHHhcCCccCCcEEEEeeccCCCC
Q 015450 318 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351 (406)
Q Consensus 318 F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 351 (406)
|.+..+|.+|++.+|+.+|+||.|-|.||-.+..
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 9999999999999999999999999999986543
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=4.5e-25 Score=171.79 Aligned_cols=169 Identities=30% Similarity=0.483 Sum_probs=148.2
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
.....+|||+||+..++++.|+++| -+.|.|.++.+.+|+.+...+||||++|.++++|+-|++-||...+.|++|+|.
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~-iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELF-IQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHH-HhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 3456799999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEE-EeeC------CCeEEEEEeCChH
Q 015450 250 PATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV-KIPA------GKRCGFVQFADRS 322 (406)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v-~i~~------~~g~afV~F~~~~ 322 (406)
.+..... +...+..|||+||..+++|..|.+.|+.||.|.+. +|.+ .++||||.|++.+
T Consensus 85 kas~~~~--------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfe 150 (203)
T KOG0131|consen 85 KASAHQK--------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFE 150 (203)
T ss_pred ecccccc--------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHH
Confidence 8872221 12234789999999999999999999999988653 3332 3789999999999
Q ss_pred HHHHHHHHhcCCccCCcEEEEeeccCCCCCC
Q 015450 323 CAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353 (406)
Q Consensus 323 ~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 353 (406)
.+.+|+..++|..++++.|+|+++..+..+.
T Consensus 151 asd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 151 ASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 9999999999999999999999998555433
No 35
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.92 E-value=1.7e-24 Score=190.02 Aligned_cols=171 Identities=21% Similarity=0.381 Sum_probs=151.9
Q ss_pred CCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEeccc
Q 015450 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (406)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~ 251 (406)
...+|||++|+|+++++.|+++| +.||+|.+|.+++|+.+++++||+||+|.+.+...+++. ...+.|+++.|.++.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf-~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYF-SQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHh-cccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceec
Confidence 67899999999999999999999 999999999999999999999999999999998888885 5678899999999999
Q ss_pred CCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHH
Q 015450 252 TNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAE 325 (406)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~ 325 (406)
..+...... ......++|||++|+.++++++|+++|++||.|.++.+..+ ++|+||+|.+.+++.
T Consensus 83 v~r~~~~~~---------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVd 153 (311)
T KOG4205|consen 83 VSREDQTKV---------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVD 153 (311)
T ss_pred cCccccccc---------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccc
Confidence 887765331 11125789999999999999999999999999999988654 789999999999999
Q ss_pred HHHHHhcCCccCCcEEEEeeccCCCCCCC
Q 015450 326 EALRMLNGTQLGGQNIRLSWGRSPSNKQA 354 (406)
Q Consensus 326 ~A~~~l~g~~~~g~~l~v~~~~~~~~~~~ 354 (406)
+++.. +-+.|+++.+.|..|.++.....
T Consensus 154 kv~~~-~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 154 KVTLQ-KFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred eeccc-ceeeecCceeeEeeccchhhccc
Confidence 99984 88999999999999998776553
No 36
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=9.1e-25 Score=182.21 Aligned_cols=149 Identities=26% Similarity=0.476 Sum_probs=138.7
Q ss_pred ceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCC
Q 015450 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (406)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~ 253 (406)
.+|||||||.++++.+|+.+| +.||.|.+|.|++ .|+||..++...++.|+.+|++..|+|..|.|+.++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lF-e~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLF-EQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHH-HhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 479999999999999999999 8999999999984 4999999999999999999999999999999998887
Q ss_pred CCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcC
Q 015450 254 KKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG 333 (406)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g 333 (406)
+.. .+.+|+|+||...++.++|+..|++||.|.+++|.++ ++||.|+-.++|..|++.|++
T Consensus 74 Ksk-----------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--y~fvh~d~~eda~~air~l~~ 134 (346)
T KOG0109|consen 74 KSK-----------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--YAFVHFDRAEDAVEAIRGLDN 134 (346)
T ss_pred cCC-----------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc--eeEEEEeeccchHHHHhcccc
Confidence 633 4688999999999999999999999999999999866 999999999999999999999
Q ss_pred CccCCcEEEEeeccCCC
Q 015450 334 TQLGGQNIRLSWGRSPS 350 (406)
Q Consensus 334 ~~~~g~~l~v~~~~~~~ 350 (406)
.+|.|+.++|.++.++-
T Consensus 135 ~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 135 TEFQGKRMHVQLSTSRL 151 (346)
T ss_pred cccccceeeeeeecccc
Confidence 99999999999877544
No 37
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=1.1e-22 Score=198.95 Aligned_cols=177 Identities=16% Similarity=0.258 Sum_probs=143.7
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
....++|||+|||..+|+++|+++|+.||.|..+.++++..+|.++|||||+|.+.++|..|++.|+|..+.++.+.|..
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999776655544
Q ss_pred eecccCCCC----------------------CCCCCCCceEEEcCCCcc----------ccHHHHHHHHHhhCCCcceeE
Q 015450 158 NWASFGAGE----------------------KRDDTPDHTIFVGDLAAD----------VTDYMLQETFRARYPSTKGAK 205 (406)
Q Consensus 158 ~~~~~~~~~----------------------~~~~~~~~~l~v~~lp~~----------~~~~~l~~~f~~~~g~v~~~~ 205 (406)
......... .....++.+|+|.|+... ...++|++.| +.||.|..|.
T Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f-~~~G~v~~v~ 450 (509)
T TIGR01642 372 ACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEF-SKYGPLINIV 450 (509)
T ss_pred CccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHH-HhcCCeeEEE
Confidence 322111000 001235678899998532 1236789999 8999999999
Q ss_pred EEecC---CCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCC
Q 015450 206 VVIDR---LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (406)
Q Consensus 206 ~~~~~---~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~ 255 (406)
|..+. .++...|++||+|.+.++|.+|+..|||..|+|+.|.|.+.....
T Consensus 451 i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~ 503 (509)
T TIGR01642 451 IPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDC 503 (509)
T ss_pred eeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHH
Confidence 98653 345668999999999999999999999999999999998876543
No 38
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=4.6e-24 Score=183.23 Aligned_cols=176 Identities=19% Similarity=0.442 Sum_probs=153.3
Q ss_pred CceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccC
Q 015450 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (406)
Q Consensus 173 ~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~ 252 (406)
.+++|||.+.+++.|+.|+..| ..||.|+++++.+|+.|++++||+||+|+-.|.|..|++.+|+..++||.|+|.+..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF-~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred hHheeeeeeEEEechHHHHhhc-cCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 4689999999999999999999 999999999999999999999999999999999999999999999999999998666
Q ss_pred CCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHH
Q 015450 253 NKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEE 326 (406)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~ 326 (406)
........... ...+...-++|||..+..+.+|+||+..|+.||+|++|.+-++ |||+||+|.+..+-..
T Consensus 192 NmpQAQpiID~----vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 192 NMPQAQPIIDM----VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred CCcccchHHHH----HHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 54433211100 0112234678999999999999999999999999999999654 8999999999999999
Q ss_pred HHHHhcCCccCCcEEEEeeccCCCCCC
Q 015450 327 ALRMLNGTQLGGQNIRLSWGRSPSNKQ 353 (406)
Q Consensus 327 A~~~l~g~~~~g~~l~v~~~~~~~~~~ 353 (406)
|+..||-..++|..|+|-.+..+.+.-
T Consensus 268 AiasMNlFDLGGQyLRVGk~vTPP~aL 294 (544)
T KOG0124|consen 268 AIASMNLFDLGGQYLRVGKCVTPPDAL 294 (544)
T ss_pred HhhhcchhhcccceEecccccCCCchh
Confidence 999999999999999998877665543
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.90 E-value=7.2e-24 Score=176.88 Aligned_cols=153 Identities=21% Similarity=0.428 Sum_probs=136.8
Q ss_pred ceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeecc
Q 015450 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (406)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~ 161 (406)
-+|||+|||..+++.+|+.+|++||.|++|.|+++ |+||..++...|+.||+.|++..|.+..+.|+.. +
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaS--k 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS--K 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEec--c
Confidence 36999999999999999999999999999999975 9999999999999999999999996655554443 2
Q ss_pred cCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccc
Q 015450 162 FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (406)
Q Consensus 162 ~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~ 241 (406)
.+ +..+.+|+|+||...++.++|++.| +.||.|.+|.|+ ++|+||.|+..++|..|++.|++.++
T Consensus 73 sK------sk~stkl~vgNis~tctn~ElRa~f-e~ygpviecdiv--------kdy~fvh~d~~eda~~air~l~~~~~ 137 (346)
T KOG0109|consen 73 SK------SKASTKLHVGNISPTCTNQELRAKF-EKYGPVIECDIV--------KDYAFVHFDRAEDAVEAIRGLDNTEF 137 (346)
T ss_pred cc------CCCccccccCCCCccccCHHHhhhh-cccCCceeeeee--------cceeEEEEeeccchHHHHhccccccc
Confidence 22 5667899999999999999999999 899999999997 55999999999999999999999999
Q ss_pred cCcceEecccCCCCcccc
Q 015450 242 STRPMRIGPATNKKTVSA 259 (406)
Q Consensus 242 ~g~~i~v~~~~~~~~~~~ 259 (406)
.|+.+.|..++.+.....
T Consensus 138 ~gk~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 138 QGKRMHVQLSTSRLRTAP 155 (346)
T ss_pred ccceeeeeeeccccccCC
Confidence 999999999887765533
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.90 E-value=4.7e-23 Score=181.04 Aligned_cols=178 Identities=24% Similarity=0.403 Sum_probs=151.0
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
.+.++|||++|.++++++.|+++|++||+|.+|.+++|+.+++++||+||+|++.+.+.+++.. ....|+++.+..+..
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 3789999999999999999999999999999999999999999999999999999999999853 333454444444443
Q ss_pred ecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcC
Q 015450 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (406)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 238 (406)
................++||++|+.++++++++++| ++||.|..+.++.|..+.++++|+||.|.+++++.+++. ..-
T Consensus 83 v~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yf-e~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f 160 (311)
T KOG4205|consen 83 VSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYF-EQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKF 160 (311)
T ss_pred cCcccccccccccceeEEEecCcCCCCchHHHhhhh-hccceeEeeEEeecccccccccceeeEeccccccceecc-cce
Confidence 333222222333357799999999999999999999 899999999999999999999999999999999999985 778
Q ss_pred ccccCcceEecccCCCCcccc
Q 015450 239 VFCSTRPMRIGPATNKKTVSA 259 (406)
Q Consensus 239 ~~~~g~~i~v~~~~~~~~~~~ 259 (406)
+.|.++.+.|+.|.++.....
T Consensus 161 ~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 161 HDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred eeecCceeeEeeccchhhccc
Confidence 899999999999998876543
No 41
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.89 E-value=4e-21 Score=167.70 Aligned_cols=258 Identities=19% Similarity=0.338 Sum_probs=203.8
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccce-EEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGY-GFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~-a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
.--++.|.|+-.-++-+-|.++|++||.|.+|.-.... .+| |.|.|.+.+.|..|...|+|+-|....+.+|++
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn-----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId 223 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN-----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRID 223 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc-----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEee
Confidence 34556899999999999999999999999887655432 245 999999999999999999999998888888877
Q ss_pred ecccCC--------------------C-------------------------------------CCCCCCC--CceEEEc
Q 015450 159 WASFGA--------------------G-------------------------------------EKRDDTP--DHTIFVG 179 (406)
Q Consensus 159 ~~~~~~--------------------~-------------------------------------~~~~~~~--~~~l~v~ 179 (406)
++.... + ..+-... +..|.|.
T Consensus 224 ~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvs 303 (492)
T KOG1190|consen 224 FSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVS 303 (492)
T ss_pred hhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEe
Confidence 653210 0 0000111 4677888
Q ss_pred CCC-ccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCCccc
Q 015450 180 DLA-ADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258 (406)
Q Consensus 180 ~lp-~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~~~ 258 (406)
||. ..+|.+.|..+| ..||.|.+++|+.++ +..|.|.+.+...|..|++.|+|..+.|+.|+|.+++.....-
T Consensus 304 nln~~~VT~d~LftlF-gvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 304 NLNEEAVTPDVLFTLF-GVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred cCchhccchhHHHHHH-hhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 886 568999999999 999999999999886 4679999999999999999999999999999999887543331
Q ss_pred ccccCCc--------------------cccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEE-e-eCCCeEEEE
Q 015450 259 ASYQNSQ--------------------VAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVK-I-PAGKRCGFV 316 (406)
Q Consensus 259 ~~~~~~~--------------------~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~-i-~~~~g~afV 316 (406)
....... .......+.+.+|.+.|||.+++||+|++.|..-|...+.. + .+++.+|.+
T Consensus 378 p~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~ 457 (492)
T KOG1190|consen 378 PREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALP 457 (492)
T ss_pred CCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeec
Confidence 1110000 00011235678999999999999999999999988765543 3 557889999
Q ss_pred EeCChHHHHHHHHHhcCCccCCc-EEEEeeccC
Q 015450 317 QFADRSCAEEALRMLNGTQLGGQ-NIRLSWGRS 348 (406)
Q Consensus 317 ~F~~~~~A~~A~~~l~g~~~~g~-~l~v~~~~~ 348 (406)
.+++.|+|..|+..+|.+.++.. .|||+|.++
T Consensus 458 q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 458 QLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999998755 899999875
No 42
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.1e-21 Score=180.47 Aligned_cols=265 Identities=21% Similarity=0.332 Sum_probs=203.8
Q ss_pred CCCCCCcceeeecCCCcccCHHHHhhhhhcc-----------cc-eeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHH
Q 015450 75 QGQPGEIRTLWIGDLQYWMDETYLNTCFAHT-----------GE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142 (406)
Q Consensus 75 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~-----------G~-v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~ 142 (406)
.....+.+.++|++++..++++.+..+|..- |. +..|.+...+ .|||++|.+.+.|..|+.
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~- 241 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMA- 241 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhc-
Confidence 3456778899999999999999999998663 22 6666666554 699999999999999986
Q ss_pred cCCCCCCCCCcceeeeeccc-----------------CCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeE
Q 015450 143 FNGTPMPNGEQNFRLNWASF-----------------GAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK 205 (406)
Q Consensus 143 l~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~ 205 (406)
+++..+.+....+....... .............+||++|+..+++.++++++ +.||.+...+
T Consensus 242 ~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell-~~fg~lk~f~ 320 (500)
T KOG0120|consen 242 LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELL-DSFGPLKAFR 320 (500)
T ss_pred ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHH-Hhcccchhhe
Confidence 56655555543333222111 11112234456789999999999999999999 8999999999
Q ss_pred EEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCCcccccccC---------CccccCCCCCCCc
Q 015450 206 VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQN---------SQVAQSDDDPNNT 276 (406)
Q Consensus 206 ~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 276 (406)
++.+..+|.++||||.+|.+......|+..|||..+.++.+.|..+-..........+ ...........+.
T Consensus 321 lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~ 400 (500)
T KOG0120|consen 321 LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTE 400 (500)
T ss_pred eecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcch
Confidence 9999999999999999999999999999999999999999999877755444222222 0011123345566
Q ss_pred eEEEcCCCCC--C-CH-------HHHHHHhccCCcEEEEEeeCC---------CeEEEEEeCChHHHHHHHHHhcCCccC
Q 015450 277 TVFVGNLDSI--V-TD-------EHLRELFSQYGQLVHVKIPAG---------KRCGFVQFADRSCAEEALRMLNGTQLG 337 (406)
Q Consensus 277 ~l~V~nlp~~--~-t~-------e~l~~~F~~~G~i~~v~i~~~---------~g~afV~F~~~~~A~~A~~~l~g~~~~ 337 (406)
+|++.|+-.. . .+ |+|+..|++||.|.+|.|+++ .|..||+|.+.+++++|+++|+|.+|.
T Consensus 401 Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~ 480 (500)
T KOG0120|consen 401 VLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA 480 (500)
T ss_pred hhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeC
Confidence 7777764321 1 11 567778899999999999775 578899999999999999999999999
Q ss_pred CcEEEEeecc
Q 015450 338 GQNIRLSWGR 347 (406)
Q Consensus 338 g~~l~v~~~~ 347 (406)
+|.|..+|-.
T Consensus 481 nRtVvtsYyd 490 (500)
T KOG0120|consen 481 NRTVVASYYD 490 (500)
T ss_pred CcEEEEEecC
Confidence 9999988754
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=5.8e-22 Score=163.46 Aligned_cols=180 Identities=23% Similarity=0.410 Sum_probs=150.2
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccc---cCcceE
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC---STRPMR 247 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~---~g~~i~ 247 (406)
..+++||||-|...-.|+|++.+| ..||.|++|.+.+.. +|.+||++||.|.+..+|..||+.|++... ....+.
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf-~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLF-QPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHh-cccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 367899999999999999999999 999999999999887 789999999999999999999999998664 346788
Q ss_pred ecccCCCCcccc--------------------------------------------------------------------
Q 015450 248 IGPATNKKTVSA-------------------------------------------------------------------- 259 (406)
Q Consensus 248 v~~~~~~~~~~~-------------------------------------------------------------------- 259 (406)
|++++..+++..
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 888887665500
Q ss_pred --------ccc---------------CC----------------------------------------------------
Q 015450 260 --------SYQ---------------NS---------------------------------------------------- 264 (406)
Q Consensus 260 --------~~~---------------~~---------------------------------------------------- 264 (406)
... ..
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence 000 00
Q ss_pred --------------------ccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEe
Q 015450 265 --------------------QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQF 318 (406)
Q Consensus 265 --------------------~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F 318 (406)
-.......+..|.|||..||.++.+.||.++|-.||.|++.++.-| |+|+||.|
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSf 334 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSF 334 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEec
Confidence 0000012267899999999999999999999999999999887543 78999999
Q ss_pred CChHHHHHHHHHhcCCccCCcEEEEeeccCCCCC
Q 015450 319 ADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 352 (406)
Q Consensus 319 ~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 352 (406)
+++.+|..||.+|||..|+-++|+|.+.|++...
T Consensus 335 DNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 335 DNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred CCchhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999999999999998876643
No 44
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=8.4e-21 Score=156.65 Aligned_cols=177 Identities=24% Similarity=0.448 Sum_probs=149.8
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCC-CCCCCccee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP-MPNGEQNFR 156 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~-~~~~~~~~~ 156 (406)
..+.++|||+.|...-.|+|++.+|..||.|++|.+.+.. .|.+||||||+|.+..+|..||..|+|.. +.+..-.+.
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 3478999999999999999999999999999999999986 69999999999999999999999998853 444433333
Q ss_pred eeecccC-------------------------------------------------------------------------
Q 015450 157 LNWASFG------------------------------------------------------------------------- 163 (406)
Q Consensus 157 ~~~~~~~------------------------------------------------------------------------- 163 (406)
+.+++..
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 3332110
Q ss_pred --------------------------------------------------------------------------------
Q 015450 164 -------------------------------------------------------------------------------- 163 (406)
Q Consensus 164 -------------------------------------------------------------------------------- 163 (406)
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence
Q ss_pred ---------------------CCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEE
Q 015450 164 ---------------------AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVR 222 (406)
Q Consensus 164 ---------------------~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~ 222 (406)
....++....++|||--||.+..+.||...| -.||.|.+.++..|+.|+.+|+|+||.
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF-~PFGhivSaKVFvDRATNQSKCFGFVS 333 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMF-LPFGHIVSAKVFVDRATNQSKCFGFVS 333 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHh-ccccceeeeeeeehhccccccceeeEe
Confidence 0000112356789999999999999999999 899999999999999999999999999
Q ss_pred ecCHHHHHHHHHHhcCccccCcceEecccCCCCc
Q 015450 223 FGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256 (406)
Q Consensus 223 f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~ 256 (406)
|++..++..||..+||+.|+=+.++|....++..
T Consensus 334 fDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred cCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 9999999999999999999999999987766544
No 45
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.85 E-value=6.3e-20 Score=160.26 Aligned_cols=260 Identities=18% Similarity=0.264 Sum_probs=184.7
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
..++.|.++|||++++|+||.+++..||.|..+.+.+.+ ..||++|.++++|...+.......-..++..+-+.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk------nQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK------NQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccc------hhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 368899999999999999999999999999999998876 38999999999998843322211111111111111
Q ss_pred ecc------------------------c------------CCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcc
Q 015450 159 WAS------------------------F------------GAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202 (406)
Q Consensus 159 ~~~------------------------~------------~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~ 202 (406)
++. . ..+.......--.++|+++-.-++-+-|..+| ++||-|.
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvF-S~fG~Vl 178 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVF-SKFGFVL 178 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHH-hhcceeE
Confidence 110 0 00000111122467889999999999999999 9999998
Q ss_pred eeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccC--cceEecccCC----------CCccccccc--------
Q 015450 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST--RPMRIGPATN----------KKTVSASYQ-------- 262 (406)
Q Consensus 203 ~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g--~~i~v~~~~~----------~~~~~~~~~-------- 262 (406)
.+...... ..=.|.|.|.+.+.|..|...|+|..|.+ ..++|.++.- +...-....
T Consensus 179 KIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p 254 (492)
T KOG1190|consen 179 KIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQP 254 (492)
T ss_pred EEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCcccc
Confidence 77655432 12248899999999999999999988754 3444444331 111100000
Q ss_pred ----------------------------CCccc-cCCCCC-CCceEEEcCCCCC-CCHHHHHHHhccCCcEEEEEeeCC-
Q 015450 263 ----------------------------NSQVA-QSDDDP-NNTTVFVGNLDSI-VTDEHLRELFSQYGQLVHVKIPAG- 310 (406)
Q Consensus 263 ----------------------------~~~~~-~~~~~~-~~~~l~V~nlp~~-~t~e~l~~~F~~~G~i~~v~i~~~- 310 (406)
..... ...... .+.+|.|.||..+ +|.+.|..+|..||+|.+|+|..+
T Consensus 255 ~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk 334 (492)
T KOG1190|consen 255 SLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK 334 (492)
T ss_pred ccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC
Confidence 00000 000001 2678889999886 799999999999999999999876
Q ss_pred CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCC
Q 015450 311 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349 (406)
Q Consensus 311 ~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 349 (406)
+..|.|.|.|...|.-|++.|+|..|-|+.|+|.++|-.
T Consensus 335 kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 335 KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 569999999999999999999999999999999998843
No 46
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.83 E-value=3.4e-20 Score=172.99 Aligned_cols=174 Identities=19% Similarity=0.345 Sum_probs=148.1
Q ss_pred ceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCC---CCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQT---GQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
++|||.||++++|.++|..+|+..|.|.++.|...++. -.|.||+||+|.+.++|+.|++.|+|..|.|+.+.+++.
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 33999999999999999999999999999998876532 135699999999999999999999999999988888877
Q ss_pred ecccCC---CCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHH
Q 015450 159 WASFGA---GEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (406)
Q Consensus 159 ~~~~~~---~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 235 (406)
...... .........+.|+|.|||+..+..+++++| +.||.+.+|+|......+.++|||||+|-+..+|..|+..
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF-~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLF-TAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHH-hcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 622111 111122235689999999999999999999 9999999999987755667799999999999999999999
Q ss_pred hcCccccCcceEecccCCCCc
Q 015450 236 MNGVFCSTRPMRIGPATNKKT 256 (406)
Q Consensus 236 ~~~~~~~g~~i~v~~~~~~~~ 256 (406)
|..+.+.||.+.+.|+..-..
T Consensus 675 l~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 675 LGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred hcccceechhhheehhccchH
Confidence 999999999999999986543
No 47
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.83 E-value=8.6e-21 Score=172.28 Aligned_cols=176 Identities=26% Similarity=0.397 Sum_probs=149.0
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
+...+++|+--|...++..+|.++| +.+|.|..|.++.|+.+++++|.+||+|.+.+....|+ .|.|..+.|.+|.|.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efF-s~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFF-SIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHH-HhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 3445788888888899999999999 89999999999999999999999999999999999999 699999999999998
Q ss_pred ccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHH
Q 015450 250 PATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSC 323 (406)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~ 323 (406)
.....+............... ..+...|||+||.+++++++|+.+|+.||.|+.|.+..+ +||+||+|.+.++
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~-~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGF-TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred ccHHHHHHHHhcccccccccc-ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 877665552222222211111 223334999999999999999999999999999998665 7999999999999
Q ss_pred HHHHHHHhcCCccCCcEEEEeeccC
Q 015450 324 AEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 324 A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
|.+|+..|||.+|.|+.|+|.....
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeee
Confidence 9999999999999999999976553
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=3e-19 Score=141.96 Aligned_cols=80 Identities=29% Similarity=0.552 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
...+++|||+||+++++|++|+++|++||.|++|+|..+ ++||||+|++.++|++|++.|++..|+|+.|+|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345788999999999999999999999999999999644 79999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015450 346 GRSPSN 351 (406)
Q Consensus 346 ~~~~~~ 351 (406)
++.+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 986544
No 49
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=5e-18 Score=132.69 Aligned_cols=163 Identities=15% Similarity=0.260 Sum_probs=134.7
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecc
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 250 (406)
..+++|||+|||.++.+.+|.++| -+||.|..|.+...+ ..-.||||+|++..+|+.||..-++..++|..|+|++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlF-yKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLF-YKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred cccceEEecCCCcchhhccHHHHH-hhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 356799999999999999999999 899999999885443 3367999999999999999999999999999999999
Q ss_pred cCCCCcccccccCC-----------ccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeC
Q 015450 251 ATNKKTVSASYQNS-----------QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFA 319 (406)
Q Consensus 251 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~ 319 (406)
+............- .............|.|.+||.+-+|+||+++..+-|.|+..++.++ +.+.|+|.
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV~~~ 158 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVGVVEYL 158 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cceeeeee
Confidence 88765322211100 0011223345678999999999999999999999999999999887 48999999
Q ss_pred ChHHHHHHHHHhcCCccCC
Q 015450 320 DRSCAEEALRMLNGTQLGG 338 (406)
Q Consensus 320 ~~~~A~~A~~~l~g~~~~g 338 (406)
..|+.+-|+..|+...+..
T Consensus 159 r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 159 RKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ehhhHHHHHHhhccccccC
Confidence 9999999999999887653
No 50
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.79 E-value=4.7e-18 Score=136.90 Aligned_cols=236 Identities=17% Similarity=0.211 Sum_probs=138.1
Q ss_pred CCCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEee-CCCCCccceEEEEEccHHHHHHHHHHcCCCCCCC-CCc
Q 015450 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRN-KQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-GEQ 153 (406)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~-~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~-~~~ 153 (406)
.+++.-+||||.+||.++...||..+|+.|-..+.+.+... +....++.+|||.|.+..+|..|+..|||..++- ...
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 45677899999999999999999999999977777776553 3333566899999999999999999999988864 345
Q ss_pred ceeeeecccCCCCCCCCC-----CCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHH
Q 015450 154 NFRLNWASFGAGEKRDDT-----PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228 (406)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~-----~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~ 228 (406)
+++++.++...+.++... .+..+-+-+-..........+..+..+ ....+..-......+-- .+...+.
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~---~p~~l~~~~~a~al~~~---~~t~~~~ 182 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLS---DPDELQEPGNADALKEN---DTTKSEA 182 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhcccccc---CccccCCccccccCCCc---cccchhh
Confidence 666666654433322211 112222222222111111111110000 00000000000000000 0111111
Q ss_pred HHHHHHHhcCccccCcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEee
Q 015450 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 308 (406)
Q Consensus 229 a~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~ 308 (406)
..++.. + ...... ....+. ........+.+|||.||..+++|++|+.+|+.|-....++|.
T Consensus 183 l~a~~~-~--------------~P~a~a---~l~ks~-q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~ 243 (284)
T KOG1457|consen 183 LSAPDS-K--------------APSANA---HLEKSS-QGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR 243 (284)
T ss_pred hhhhhh-c--------------CCcccc---hhhhhh-cccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe
Confidence 000000 0 000000 000000 011233468899999999999999999999999876666664
Q ss_pred --CCCeEEEEEeCChHHHHHHHHHhcCCcc
Q 015450 309 --AGKRCGFVQFADRSCAEEALRMLNGTQL 336 (406)
Q Consensus 309 --~~~g~afV~F~~~~~A~~A~~~l~g~~~ 336 (406)
.+-..||++|++.+.|..|+..|+|..|
T Consensus 244 ~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 244 ARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred cCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 3456899999999999999999998876
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.79 E-value=5e-18 Score=138.28 Aligned_cols=173 Identities=21% Similarity=0.383 Sum_probs=144.6
Q ss_pred CCCceEEEcCCCccccHHHHHH----HHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcce
Q 015450 171 TPDHTIFVGDLAADVTDYMLQE----TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~----~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i 246 (406)
.++.||||.||...+..++|+. +| +.||.|.+|.... +.+.+|.|||.|.+.+.|..|+.+|+|..+.|+.+
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LF-sqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLF-SQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHH-HhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 4455999999999999999998 89 8999998877653 56789999999999999999999999999999999
Q ss_pred EecccCCCCcccccccC----C-------------cc----c--------------cCCCCCCCceEEEcCCCCCCCHHH
Q 015450 247 RIGPATNKKTVSASYQN----S-------------QV----A--------------QSDDDPNNTTVFVGNLDSIVTDEH 291 (406)
Q Consensus 247 ~v~~~~~~~~~~~~~~~----~-------------~~----~--------------~~~~~~~~~~l~V~nlp~~~t~e~ 291 (406)
+|.++......-..... . .. . .......+.+||+.|||..++.+.
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHH
Confidence 99999876554221000 0 00 0 012246788999999999999999
Q ss_pred HHHHhccCCcEEEEEeeCC-CeEEEEEeCChHHHHHHHHHhcCCccC-CcEEEEeecc
Q 015450 292 LRELFSQYGQLVHVKIPAG-KRCGFVQFADRSCAEEALRMLNGTQLG-GQNIRLSWGR 347 (406)
Q Consensus 292 l~~~F~~~G~i~~v~i~~~-~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~ 347 (406)
|..+|++|.....|++... ++.|||+|.+...|..|...|.+..|. ...+.|.+++
T Consensus 163 l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999999998875 689999999999999999999999986 7888888875
No 52
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.78 E-value=7.6e-17 Score=139.52 Aligned_cols=263 Identities=17% Similarity=0.192 Sum_probs=195.2
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.+..+..|.|++|-..++|.+|.+.++.||.|.-+..+..+ ..|.|+|++.+.|++|+..--...+.......-
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhh
Confidence 34557789999999999999999999999999999888765 489999999999999986433333322333333
Q ss_pred eeecccCCCC---CCCCCCCceEEEc--CCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHH
Q 015450 157 LNWASFGAGE---KRDDTPDHTIFVG--DLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231 (406)
Q Consensus 157 ~~~~~~~~~~---~~~~~~~~~l~v~--~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ 231 (406)
++++.....+ ......++.|.+. |--..+|-+-|..+. ...|.|..|.|++.. --.|.|||++.+.|.+
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Ic-np~GkVlRIvIfkkn-----gVQAmVEFdsv~~Aqr 174 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTIC-NPQGKVLRIVIFKKN-----GVQAMVEFDSVEVAQR 174 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhc-CCCCceEEEEEEecc-----ceeeEEeechhHHHHH
Confidence 3333222111 2223344444444 444678999999999 899999998887653 4579999999999999
Q ss_pred HHHHhcCcccc--CcceEecccCCCCcc-------cccccC---------------------------------------
Q 015450 232 AMTEMNGVFCS--TRPMRIGPATNKKTV-------SASYQN--------------------------------------- 263 (406)
Q Consensus 232 a~~~~~~~~~~--g~~i~v~~~~~~~~~-------~~~~~~--------------------------------------- 263 (406)
|.++|||..|. -..|+|+++++..-. .+.+..
T Consensus 175 Ak~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~s 254 (494)
T KOG1456|consen 175 AKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYS 254 (494)
T ss_pred HHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcc
Confidence 99999998874 356777777654322 000000
Q ss_pred ---------------------CccccCCCCCCCceEEEcCCCCC-CCHHHHHHHhccCCcEEEEEeeCC-CeEEEEEeCC
Q 015450 264 ---------------------SQVAQSDDDPNNTTVFVGNLDSI-VTDEHLRELFSQYGQLVHVKIPAG-KRCGFVQFAD 320 (406)
Q Consensus 264 ---------------------~~~~~~~~~~~~~~l~V~nlp~~-~t~e~l~~~F~~~G~i~~v~i~~~-~g~afV~F~~ 320 (406)
............+++.|.+|... ++-+.|-++|..||.|++|++++. .+.|.|++.|
T Consensus 255 g~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd 334 (494)
T KOG1456|consen 255 GDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGD 334 (494)
T ss_pred cccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCc
Confidence 00000112345688999999976 688999999999999999999887 5899999999
Q ss_pred hHHHHHHHHHhcCCccCCcEEEEeeccCCCC
Q 015450 321 RSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351 (406)
Q Consensus 321 ~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 351 (406)
..+.++|+..||+..+-|.+|.|.+++...-
T Consensus 335 ~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v 365 (494)
T KOG1456|consen 335 AYAVERAVTHLNNIPLFGGKLNVCVSKQNFV 365 (494)
T ss_pred HHHHHHHHHHhccCccccceEEEeecccccc
Confidence 9999999999999999999999999885543
No 53
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.77 E-value=2.1e-17 Score=148.43 Aligned_cols=168 Identities=19% Similarity=0.256 Sum_probs=130.7
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
......|-+.+|||++|+++|+++| +.++ |.+ ++..+.+|+..|-|||+|.+++++++|++ .+...+..|.|.|-
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff-~~~~-I~~--~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFF-SNCG-IEN--LEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHH-hcCc-eeE--EEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 3445678889999999999999999 6664 555 44455579999999999999999999996 77888899999998
Q ss_pred ccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEE-EEee-----CCCeEEEEEeCChHH
Q 015450 250 PATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH-VKIP-----AGKRCGFVQFADRSC 323 (406)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~-v~i~-----~~~g~afV~F~~~~~ 323 (406)
.+......... ............+|.|.+||+.||++||.+||+..-.|.+ |.+. +..+.|||.|++.+.
T Consensus 82 ~~~~~e~d~~~----~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ 157 (510)
T KOG4211|consen 82 TAGGAEADWVM----RPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQES 157 (510)
T ss_pred ccCCccccccc----cCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHH
Confidence 77655442111 1111122246788999999999999999999998765555 3232 235799999999999
Q ss_pred HHHHHHHhcCCccCCcEEEEeecc
Q 015450 324 AEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 324 A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
|++|+.. |...|+.|.|.|..+.
T Consensus 158 ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 158 AEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred HHHHHHH-HHHhhccceEEeehhH
Confidence 9999997 7788999999996543
No 54
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.75 E-value=1.5e-15 Score=131.50 Aligned_cols=249 Identities=22% Similarity=0.255 Sum_probs=190.8
Q ss_pred CcceeeecCC--CcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 80 EIRTLWIGDL--QYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 80 ~~~~l~v~~l--p~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
....|.++=| -..+|-+-|..++...|.|..|.|++.. | -.|.|||++.+.|++|.+.|||..|...-+++++
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn--g---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN--G---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc--c---eeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 3444554444 4568999999999999999999998753 2 4699999999999999999999999888788877
Q ss_pred eecccCCCC-----------------------------------------------------------------------
Q 015450 158 NWASFGAGE----------------------------------------------------------------------- 166 (406)
Q Consensus 158 ~~~~~~~~~----------------------------------------------------------------------- 166 (406)
++++.....
T Consensus 194 eyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~ 273 (494)
T KOG1456|consen 194 EYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYR 273 (494)
T ss_pred EecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccc
Confidence 776431000
Q ss_pred -------CCCCCCCceEEEcCCCc-cccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcC
Q 015450 167 -------KRDDTPDHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (406)
Q Consensus 167 -------~~~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 238 (406)
.....+...++|-+|.. .++-+.|.++| ..||.|+.++.++.. .|-|.|++.+..+.++|+..||+
T Consensus 274 ~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~-ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn 347 (494)
T KOG1456|consen 274 DGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLF-CLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNN 347 (494)
T ss_pred cCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhh-hhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhcc
Confidence 00012345788888875 46678999999 999999999998876 67899999999999999999999
Q ss_pred ccccCcceEecccCCCCcccc-----------------ccc-----CCccccCCCCCCCceEEEcCCCCCCCHHHHHHHh
Q 015450 239 VFCSTRPMRIGPATNKKTVSA-----------------SYQ-----NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF 296 (406)
Q Consensus 239 ~~~~g~~i~v~~~~~~~~~~~-----------------~~~-----~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F 296 (406)
..+.|..|.|..++-...... +.+ .....+.....++++|..-|.|..+|||.|.++|
T Consensus 348 ~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~ 427 (494)
T KOG1456|consen 348 IPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGIC 427 (494)
T ss_pred CccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHh
Confidence 999999999876653322210 000 1111233445788999999999999999999999
Q ss_pred ccCCc-EEEEEeeCCC----eEEEEEeCChHHHHHHHHHhcCCccCCc
Q 015450 297 SQYGQ-LVHVKIPAGK----RCGFVQFADRSCAEEALRMLNGTQLGGQ 339 (406)
Q Consensus 297 ~~~G~-i~~v~i~~~~----g~afV~F~~~~~A~~A~~~l~g~~~~g~ 339 (406)
...+. -.+|++...| ..+.+||++.++|..||..||...|.+.
T Consensus 428 nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 428 NEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred hhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCC
Confidence 87653 3566664432 4789999999999999999999888654
No 55
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.75 E-value=7.9e-17 Score=131.35 Aligned_cols=163 Identities=20% Similarity=0.373 Sum_probs=134.2
Q ss_pred cceeeecCCCcccCHHHHhh----hhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 81 IRTLWIGDLQYWMDETYLNT----CFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~----~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
..||||.||+..+..++|+. +|++||.|.+|...+ +.+.+|.|||.|.+.+.|..|++.|+|..+.++.+.+.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999999987 999999999998774 56899999999999999999999999999977755554
Q ss_pred eeecccCCCC--------------------------------------------CCCCCCCceEEEcCCCccccHHHHHH
Q 015450 157 LNWASFGAGE--------------------------------------------KRDDTPDHTIFVGDLAADVTDYMLQE 192 (406)
Q Consensus 157 ~~~~~~~~~~--------------------------------------------~~~~~~~~~l~v~~lp~~~~~~~l~~ 192 (406)
.......... .....++..+|+-|||..++.+.+..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 4333221100 01144567899999999999999999
Q ss_pred HHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc-CcceEecccC
Q 015450 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS-TRPMRIGPAT 252 (406)
Q Consensus 193 ~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~-g~~i~v~~~~ 252 (406)
+| +.|.....++++... ++.|||+|.+...+..|...+.+..+. ...+.|.++.
T Consensus 166 lf-~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LF-EQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HH-hhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99 899999999988765 789999999999999999999988776 6666666553
No 56
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=5.3e-17 Score=126.99 Aligned_cols=152 Identities=14% Similarity=0.192 Sum_probs=122.1
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
..+++|||+|||.++.+.+|+++|.+||.|.+|.+.... ..-.||||+|++..+|+.||.--+|.-+.+..+.|.+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 567899999999999999999999999999999876432 34479999999999999999999998887665555544
Q ss_pred ecccCCCC--------------------CCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcce
Q 015450 159 WASFGAGE--------------------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGY 218 (406)
Q Consensus 159 ~~~~~~~~--------------------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~ 218 (406)
........ .-.......|.|.+||.+.+.++|+++. ..-|.|....+.+| |.
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHm-ReaGdvCfadv~rD-------g~ 152 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHM-REAGDVCFADVQRD-------GV 152 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHH-HhhCCeeeeeeecc-------cc
Confidence 33211110 0112345689999999999999999999 78899988887665 48
Q ss_pred EEEEecCHHHHHHHHHHhcCccc
Q 015450 219 GFVRFGDESEQLRAMTEMNGVFC 241 (406)
Q Consensus 219 afv~f~~~~~a~~a~~~~~~~~~ 241 (406)
+.|+|...|+.+-|+..|+...+
T Consensus 153 GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeeeeehhhHHHHHHhhccccc
Confidence 89999999999999998876554
No 57
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=7.3e-18 Score=139.03 Aligned_cols=162 Identities=21% Similarity=0.361 Sum_probs=134.9
Q ss_pred ceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCC
Q 015450 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (406)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~ 253 (406)
..+||++|++.+.+.+|..+| ..||.+..+.+. .||+||+|.+..+|..|+..++++.+.+..+.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f-~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFF-KGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHH-hhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 368999999999999999999 899999988874 57899999999999999999999999998888988885
Q ss_pred CCcccccccC-----CccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHH
Q 015450 254 KKTVSASYQN-----SQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEAL 328 (406)
Q Consensus 254 ~~~~~~~~~~-----~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~ 328 (406)
.......... ..........+.+.|+|.++...++|.+|.++|+.+|.+....+ .++++||+|++.++|.+|+
T Consensus 73 ~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~ 150 (216)
T KOG0106|consen 73 KRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRAL 150 (216)
T ss_pred cccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcc
Confidence 4332211000 01111222456788999999999999999999999999966665 6789999999999999999
Q ss_pred HHhcCCccCCcEEEEeec
Q 015450 329 RMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 329 ~~l~g~~~~g~~l~v~~~ 346 (406)
..|++..+.++.|.+...
T Consensus 151 ~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 151 EKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhccchhhcCceeeeccc
Confidence 999999999999999443
No 58
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.72 E-value=2.7e-16 Score=138.85 Aligned_cols=176 Identities=20% Similarity=0.350 Sum_probs=144.7
Q ss_pred CceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccC
Q 015450 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (406)
Q Consensus 173 ~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~ 252 (406)
.+.+||.|||+++..++|+++|+++.|+|..|.++.|. +++++|+|.|+|++.|.+++|++.||.+.+.||.|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 45699999999999999999999999999999999997 89999999999999999999999999999999999998766
Q ss_pred CCCcccc----------------------------------------------cc-----------cCC-----------
Q 015450 253 NKKTVSA----------------------------------------------SY-----------QNS----------- 264 (406)
Q Consensus 253 ~~~~~~~----------------------------------------------~~-----------~~~----------- 264 (406)
......- +. .+.
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 5322200 00 000
Q ss_pred --ccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccC
Q 015450 265 --QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLG 337 (406)
Q Consensus 265 --~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~ 337 (406)
........+...++||.||...+..+.|++.|.-.|.|+.|.+..+ +++|.|+|+.+-+|.+||..|++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 0000012355678999999999999999999999999999988544 789999999999999999999987777
Q ss_pred CcEEEEeeccCC
Q 015450 338 GQNIRLSWGRSP 349 (406)
Q Consensus 338 g~~l~v~~~~~~ 349 (406)
++...+++.+-.
T Consensus 283 ~~~~~~Rl~~~~ 294 (608)
T KOG4212|consen 283 DRRMTVRLDRIP 294 (608)
T ss_pred cccceeeccccc
Confidence 788777775533
No 59
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.67 E-value=7.4e-16 Score=133.88 Aligned_cols=266 Identities=14% Similarity=0.141 Sum_probs=177.0
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
..++...|..++||+..++.+|..+|.-.....--..+.....|+-.|.+.|.|.|.|.-+-|++... ..+. .+.+.
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhk-hh~g--~ryie 132 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHK-HHMG--TRYIE 132 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhh-hhcc--CCcee
Confidence 44566678899999999999999999765332222223333346667999999999999999987522 2222 22222
Q ss_pred eeeccc---------CCCCCCCC---CCCceEEEcCCCccccHHHHHHHHHhh----CCCcceeEEEecCCCCCCcceEE
Q 015450 157 LNWASF---------GAGEKRDD---TPDHTIFVGDLAADVTDYMLQETFRAR----YPSTKGAKVVIDRLTGRTKGYGF 220 (406)
Q Consensus 157 ~~~~~~---------~~~~~~~~---~~~~~l~v~~lp~~~~~~~l~~~f~~~----~g~v~~~~~~~~~~~~~~~g~af 220 (406)
+-.+.. .+.+.... ...-.|-+++||+++++.++.++| .. .+.++.+..+.. .+|+..|-||
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF-~~~cpv~~g~egvLFV~r-pdgrpTGdAF 210 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFF-GPPCPVTGGTEGVLFVTR-PDGRPTGDAF 210 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhc-CCCCcccCCccceEEEEC-CCCCcccceE
Confidence 222211 11111111 123456778999999999999999 41 234455555544 3889999999
Q ss_pred EEecCHHHHHHHHHHhcCccccCcceEecccCCCCccccccc-----------CCccc-----cCCCCCCCceEEEcCCC
Q 015450 221 VRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQ-----------NSQVA-----QSDDDPNNTTVFVGNLD 284 (406)
Q Consensus 221 v~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~-----------~~~~~-----~~~~~~~~~~l~V~nlp 284 (406)
|.|..+++|..|+. .|...++-|.|.+-+++..+....... ..... .-.......+|.+.+||
T Consensus 211 vlfa~ee~aq~aL~-khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLP 289 (508)
T KOG1365|consen 211 VLFACEEDAQFALR-KHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLP 289 (508)
T ss_pred EEecCHHHHHHHHH-HHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCC
Confidence 99999999999996 455566667676655543322211000 00000 00111236789999999
Q ss_pred CCCCHHHHHHHhccCCcEEE---EEe-----eCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 285 SIVTDEHLRELFSQYGQLVH---VKI-----PAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 285 ~~~t~e~l~~~F~~~G~i~~---v~i-----~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
+..+.|||.+||..|-.-++ |.+ .+..|.|||+|.+.++|..|..+.|.+..++|.|+|--+..
T Consensus 290 y~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 290 YEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred hhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 99999999999998864322 222 23368999999999999999999998888899999966553
No 60
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.66 E-value=5e-16 Score=123.48 Aligned_cols=85 Identities=35% Similarity=0.657 Sum_probs=79.7
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
...+++|||+||++++++++|+++| +.||.|.++.++.+..+++++|||||+|.+.++|++|++.|++..++|+.|+|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHH-hcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4456789999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015450 250 PATNKK 255 (406)
Q Consensus 250 ~~~~~~ 255 (406)
++..+.
T Consensus 110 ~a~~~~ 115 (144)
T PLN03134 110 PANDRP 115 (144)
T ss_pred eCCcCC
Confidence 987543
No 61
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=3.5e-16 Score=133.40 Aligned_cols=77 Identities=26% Similarity=0.434 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeC----CCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
...++|+|.|||+.+.|-||+.+|++||.|.+|+|.. +|||+||+|++.+||++|.++|||..|.||+|+|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 4578999999999999999999999999999999954 389999999999999999999999999999999998765
Q ss_pred C
Q 015450 349 P 349 (406)
Q Consensus 349 ~ 349 (406)
+
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 4
No 62
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.63 E-value=1.8e-14 Score=124.05 Aligned_cols=175 Identities=16% Similarity=0.205 Sum_probs=137.1
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhCCCcce--------eEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKG--------AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~ 242 (406)
.-+..|||.|||.++|-+++.++| +.||.|.. |++.++. .|..+|-|.+.|-..+++..|++.|++..+.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~-sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVM-SKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHH-HhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 345679999999999999999999 88887653 4566665 5899999999999999999999999999999
Q ss_pred CcceEecccCCCCccccccc-----------------------CCccccCCCCCCCceEEEcCCCC----CCC-------
Q 015450 243 TRPMRIGPATNKKTVSASYQ-----------------------NSQVAQSDDDPNNTTVFVGNLDS----IVT------- 288 (406)
Q Consensus 243 g~~i~v~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~V~nlp~----~~t------- 288 (406)
|+.|+|..|.-.....-... .............++|.|.||=. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 99999988763221100000 00111233345678899998732 122
Q ss_pred HHHHHHHhccCCcEEEEEee--CCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 289 DEHLRELFSQYGQLVHVKIP--AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 289 ~e~l~~~F~~~G~i~~v~i~--~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
.++|++-+++||.|.+|.|- -..|.+-|.|.+.++|..||..|+|+.|+||.|..+.-.
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 36788889999999999986 447999999999999999999999999999999887644
No 63
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.61 E-value=2.2e-15 Score=105.36 Aligned_cols=65 Identities=43% Similarity=0.755 Sum_probs=61.9
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEE
Q 015450 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 342 (406)
Q Consensus 278 l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 342 (406)
|||+|||.++++++|+++|+.||.|..+.+..+ +++|||+|++.++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999763 78999999999999999999999999999986
No 64
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=2.4e-15 Score=110.53 Aligned_cols=74 Identities=36% Similarity=0.659 Sum_probs=69.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCC------eEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK------RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~------g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
.+++|||+||...++||.|.++|+++|+|..|.+.-+| |||||+|.+.++|..|+.-++|..++.+.|++.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 57899999999999999999999999999999986663 799999999999999999999999999999999965
No 65
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=6.9e-15 Score=114.50 Aligned_cols=78 Identities=37% Similarity=0.588 Sum_probs=72.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCC
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 351 (406)
..++|||+||+..+++.||..+|..||.|.+|-|.+. .|||||||++..+|+.|+..|+|..|+|..|+|++......
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 4689999999999999999999999999999988665 78999999999999999999999999999999999875544
No 66
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.60 E-value=3.2e-15 Score=119.27 Aligned_cols=79 Identities=32% Similarity=0.542 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
....+|.|.||.+-++-++|+.+|++||.|-+|.|++| +|||||.|.+..+|+.|+.+|+|..|+|+.|+|.+|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34678999999999999999999999999999999876 799999999999999999999999999999999998
Q ss_pred cCCCC
Q 015450 347 RSPSN 351 (406)
Q Consensus 347 ~~~~~ 351 (406)
+-...
T Consensus 91 rygr~ 95 (256)
T KOG4207|consen 91 RYGRP 95 (256)
T ss_pred hcCCC
Confidence 85544
No 67
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=4.4e-15 Score=121.80 Aligned_cols=85 Identities=27% Similarity=0.448 Sum_probs=78.6
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
..++.++|.|.||+.++++.+|++||..||.|..|.|.+|+.||.++|||||.|.+.++|.+||+.|||.-+ ..+.++
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy--d~LILr 262 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY--DNLILR 262 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc--ceEEEE
Confidence 345788999999999999999999999999999999999999999999999999999999999999999887 568888
Q ss_pred eeecccC
Q 015450 157 LNWASFG 163 (406)
Q Consensus 157 ~~~~~~~ 163 (406)
++|+...
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9988653
No 68
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=5.9e-15 Score=121.07 Aligned_cols=77 Identities=30% Similarity=0.515 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
.+.++|.|.||++++++++|+++|.+||.|.+|.|.++ ||||||+|.+.++|.+||..|||+-+++-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46789999999999999999999999999999999765 799999999999999999999999999999999999
Q ss_pred cCC
Q 015450 347 RSP 349 (406)
Q Consensus 347 ~~~ 349 (406)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=7.8e-15 Score=124.52 Aligned_cols=74 Identities=27% Similarity=0.385 Sum_probs=69.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC---CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCC
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~---~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 349 (406)
.++|||+||++.+++++|+++|+.||.|++|+|.++ ++||||+|.+.++|..||. |+|..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 578999999999999999999999999999999776 6899999999999999996 9999999999999998743
No 70
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=2.8e-15 Score=123.81 Aligned_cols=151 Identities=19% Similarity=0.365 Sum_probs=126.2
Q ss_pred ceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeecc
Q 015450 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (406)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~ 161 (406)
..|||++|++.+.+.+|+.||..||.+.+|.+.. +|+||+|++..+|..|+..++++.+.+.. +.++|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~--~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGER--LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceeccee--eeeeccc
Confidence 4799999999999999999999999998887654 68999999999999999999999998766 5566655
Q ss_pred cC------C--C--------CCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecC
Q 015450 162 FG------A--G--------EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD 225 (406)
Q Consensus 162 ~~------~--~--------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~ 225 (406)
.. . . ..........+++.++...+..++|.++| ..+|.+....+ ..+++||+|..
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~-~~~g~~~~~~~--------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHF-RPAGEVTYVDA--------RRNFAFVEFSE 142 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhh-cccCCCchhhh--------hccccceeehh
Confidence 21 0 0 01123456789999999999999999999 89999844433 36789999999
Q ss_pred HHHHHHHHHHhcCccccCcceEeccc
Q 015450 226 ESEQLRAMTEMNGVFCSTRPMRIGPA 251 (406)
Q Consensus 226 ~~~a~~a~~~~~~~~~~g~~i~v~~~ 251 (406)
.+++..|+..|++..+.++.|.+...
T Consensus 143 ~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhhhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999999433
No 71
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.58 E-value=4.9e-13 Score=124.89 Aligned_cols=171 Identities=12% Similarity=0.059 Sum_probs=116.9
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee-
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR- 156 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~- 156 (406)
..+.+.+-+.+.+++..+.+++++|... .|..+.|..+...+.-.|.++|+|....++.+|+..-+ ..+..+-+.+.
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~-~~~~~R~~q~~P 385 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNP-SDDVNRPFQTGP 385 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCc-hhhhhcceeecC
Confidence 3556778889999999999999998764 46666776666544557999999999999999987422 22111111000
Q ss_pred ---eeec---------------------------ccCCCCC--CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcce-
Q 015450 157 ---LNWA---------------------------SFGAGEK--RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG- 203 (406)
Q Consensus 157 ---~~~~---------------------------~~~~~~~--~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~- 203 (406)
..|. ....... ........|||..||..+++.++.+.| ...-.|++
T Consensus 386 ~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f-~~~~~Ved~ 464 (944)
T KOG4307|consen 386 PGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKF-MGAAAVEDF 464 (944)
T ss_pred CCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhh-hhhhhhhhe
Confidence 0000 0000000 112345689999999999999999999 55556666
Q ss_pred eEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccC
Q 015450 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (406)
Q Consensus 204 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~ 252 (406)
|.|...+ +++.++.|||+|...+++..|...-+.+.++.+.|+|....
T Consensus 465 I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 465 IELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred eEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 5554444 77889999999999888888877666667777777775544
No 72
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.57 E-value=1.4e-13 Score=118.59 Aligned_cols=170 Identities=16% Similarity=0.298 Sum_probs=132.9
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhccccee--------EEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCC
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVV--------AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~--------~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~ 149 (406)
+.....|||+|||.++|.+++.++|++||.|. .|++.++. .|+-+|=|.|.|...+++..|++.|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44566799999999999999999999999873 57888886 4999999999999999999999999999996
Q ss_pred CCCcceeeeecccCC----------------------------------CCCCCCCCCceEEEcCCC----cccc-----
Q 015450 150 NGEQNFRLNWASFGA----------------------------------GEKRDDTPDHTIFVGDLA----ADVT----- 186 (406)
Q Consensus 150 ~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~v~~lp----~~~~----- 186 (406)
+ +.+++..+.... .........++|.+.|+= ...+
T Consensus 210 g--~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 210 G--KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred C--cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 4 555555543310 011223356789999861 1222
Q ss_pred --HHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCC
Q 015450 187 --DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (406)
Q Consensus 187 --~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~ 255 (406)
.++|.+-. ..||.|.++.|.- ..+.|.+-|.|.+.++|..||+.|+|..|+||.|.......+.
T Consensus 288 dlkedl~eec-~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 288 DLKEDLTEEC-EKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHH-HHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 35566667 7899999888753 3458899999999999999999999999999999887666543
No 73
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.5e-14 Score=118.34 Aligned_cols=79 Identities=27% Similarity=0.480 Sum_probs=70.3
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 159 (406)
.-++|||++|+|+++.++|+++|++||+|++..|+.|+.+|++|||+||+|.+.++|.+|++. .+-.|+|++..+.+..
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 456899999999999999999999999999999999999999999999999999999999975 3446777776666644
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=3.7e-14 Score=99.00 Aligned_cols=65 Identities=34% Similarity=0.698 Sum_probs=59.7
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEE
Q 015450 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 342 (406)
Q Consensus 278 l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 342 (406)
|+|+|||.++++++|+++|+.||.|.++.+..+ +++|||+|.+.++|.+|+..+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999776 68999999999999999999998999999885
No 75
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.53 E-value=2e-14 Score=100.44 Aligned_cols=67 Identities=34% Similarity=0.654 Sum_probs=63.4
Q ss_pred eeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCC
Q 015450 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151 (406)
Q Consensus 84 l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~ 151 (406)
|||+|||.++|+++|+++|++||.|..+.+..+ .+++.+++|||+|.+.++|++|++.+++..+.++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 799999999999999999999999999999998 5789999999999999999999999999888654
No 76
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=1.9e-14 Score=117.68 Aligned_cols=82 Identities=33% Similarity=0.447 Sum_probs=73.9
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecc
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 250 (406)
..-++||||+|+|.+..++|+++| +.||+|.+..|+.|+.++++|||+||+|.+.++|.+|++.. .-.|+||...++.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yF-eqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnl 87 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNL 87 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHH-HHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccch
Confidence 344689999999999999999999 89999999999999999999999999999999999999743 4568999988888
Q ss_pred cCCC
Q 015450 251 ATNK 254 (406)
Q Consensus 251 ~~~~ 254 (406)
+.-.
T Consensus 88 A~lg 91 (247)
T KOG0149|consen 88 ASLG 91 (247)
T ss_pred hhhc
Confidence 7763
No 77
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=3.7e-14 Score=121.19 Aligned_cols=87 Identities=20% Similarity=0.362 Sum_probs=76.2
Q ss_pred CCCCCCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCC
Q 015450 73 QQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (406)
Q Consensus 73 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~ 152 (406)
...+....-++|+|+|||+...|.||+.+|.+||.|.+|.|+.+. .-||||+||+|++.++|++|.++|+|..++|++
T Consensus 88 t~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRk 165 (376)
T KOG0125|consen 88 TNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRK 165 (376)
T ss_pred CcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceE
Confidence 344455667899999999999999999999999999999999985 578999999999999999999999999998877
Q ss_pred cceeeeecc
Q 015450 153 QNFRLNWAS 161 (406)
Q Consensus 153 ~~~~~~~~~ 161 (406)
+.|+...+.
T Consensus 166 IEVn~ATar 174 (376)
T KOG0125|consen 166 IEVNNATAR 174 (376)
T ss_pred EEEeccchh
Confidence 766654443
No 78
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=9.4e-14 Score=98.23 Aligned_cols=75 Identities=23% Similarity=0.411 Sum_probs=69.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC---CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~---~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
..++.|||.|||+++|.|++.++|.+||.|..|+|... +|.|||.|++..+|.+|+..|+|..++++.|.|-+-.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 35788999999999999999999999999999999654 7999999999999999999999999999999997644
No 79
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=8.7e-14 Score=102.43 Aligned_cols=85 Identities=21% Similarity=0.342 Sum_probs=79.2
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecc
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 250 (406)
..+++|||+||++.++|+.|.++| +.+|.|..|.+-.|+.+...-|||||+|.+.++|+.|++.++++.++.+.|++.|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELF-s~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELF-SKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHH-HhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 346799999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCc
Q 015450 251 ATNKKT 256 (406)
Q Consensus 251 ~~~~~~ 256 (406)
...-..
T Consensus 113 D~GF~e 118 (153)
T KOG0121|consen 113 DAGFVE 118 (153)
T ss_pred cccchh
Confidence 876543
No 80
>PLN03213 repressor of silencing 3; Provisional
Probab=99.49 E-value=1.2e-13 Score=124.05 Aligned_cols=76 Identities=20% Similarity=0.368 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC--CeEEEEEeCCh--HHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG--KRCGFVQFADR--SCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~--~g~afV~F~~~--~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
....+|||+||.+++++++|+.+|+.||.|.+|.|.+. ||||||+|.+. +++.+||..|||.++.|+.|+|..|++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34678999999999999999999999999999999865 88999999987 789999999999999999999998885
No 81
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=8.1e-14 Score=108.59 Aligned_cols=77 Identities=22% Similarity=0.384 Sum_probs=68.9
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 159 (406)
-.++|||+||+..+++.||+..|..||.|.+|+|.+.+- |||||||++..+|+.|+..|+|+.|.+..+.|.+..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-----GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-----GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-----CceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 368899999999999999999999999999999988765 999999999999999999999999987666666654
Q ss_pred cc
Q 015450 160 AS 161 (406)
Q Consensus 160 ~~ 161 (406)
..
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 43
No 82
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.47 E-value=2.3e-13 Score=113.55 Aligned_cols=74 Identities=26% Similarity=0.362 Sum_probs=68.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC---CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~---~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
...+|||+||++.+|+++|+++|+.||.|.+|+|.++ +++|||+|++.++|..|+. |+|..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 4579999999999999999999999999999999876 4799999999999999996 899999999999986553
No 83
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.47 E-value=2.9e-13 Score=89.64 Aligned_cols=55 Identities=36% Similarity=0.646 Sum_probs=51.9
Q ss_pred HHHHhccCCcEEEEEeeCCC-eEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 292 LRELFSQYGQLVHVKIPAGK-RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 292 l~~~F~~~G~i~~v~i~~~~-g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
|+++|++||.|.++.+..++ ++|||+|.+.++|.+|++.|||..++|+.|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999999887 99999999999999999999999999999999986
No 84
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.8e-13 Score=115.55 Aligned_cols=91 Identities=24% Similarity=0.473 Sum_probs=83.5
Q ss_pred CCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcc
Q 015450 166 EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (406)
Q Consensus 166 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~ 245 (406)
......+-+||||+-|+.+++|.+|+..| +.||.|+.+.|+.+..||+++|||||+|+++.+...|.+..++..|+|+.
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF-~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREF-EKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHH-HhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 33445778999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred eEecccCCCCcc
Q 015450 246 MRIGPATNKKTV 257 (406)
Q Consensus 246 i~v~~~~~~~~~ 257 (406)
|.|.+.......
T Consensus 173 i~VDvERgRTvk 184 (335)
T KOG0113|consen 173 ILVDVERGRTVK 184 (335)
T ss_pred EEEEeccccccc
Confidence 999887765544
No 85
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=1.9e-12 Score=117.27 Aligned_cols=137 Identities=31% Similarity=0.544 Sum_probs=114.5
Q ss_pred CceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccC
Q 015450 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (406)
Q Consensus 173 ~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~ 252 (406)
..+|||+||+.++++++|.++| ..||.+..+.+..++.+++++|+|||+|.+.+++..|+..+++..+.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F-~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELF-KKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHH-HhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999 899999999999998899999999999999999999999999999999999999965
Q ss_pred C----CCccccc-----ccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC
Q 015450 253 N----KKTVSAS-----YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG 310 (406)
Q Consensus 253 ~----~~~~~~~-----~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~ 310 (406)
. +...... .................+++.+++..++.+++...|..+|.+..+.+...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 194 PASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred cccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 3 1111100 00111222334456788999999999999999999999999988877654
No 86
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.45 E-value=2e-13 Score=95.31 Aligned_cols=67 Identities=34% Similarity=0.587 Sum_probs=61.1
Q ss_pred eeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCC
Q 015450 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151 (406)
Q Consensus 84 l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~ 151 (406)
|+|+|||+++++++|+++|+.+|.|..+++..++. ++.+++|||+|.+.++|.+|++.+++..+.++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 79999999999999999999999999999999976 99999999999999999999999988887654
No 87
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=6.5e-13 Score=93.05 Aligned_cols=68 Identities=49% Similarity=0.815 Sum_probs=64.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCC----eEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK----RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~----g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
+|+|+||+..+++++|+++|+.||.|.++.+..++ ++|||+|.+.++|.+|+..+++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998775 999999999999999999999999999999874
No 88
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.43 E-value=1.4e-12 Score=118.08 Aligned_cols=129 Identities=22% Similarity=0.384 Sum_probs=107.0
Q ss_pred cceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeee-
Q 015450 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW- 159 (406)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~- 159 (406)
.++|||+||+.++|+++|+++|..||.|..+.+..++.+++++|||||+|.+.++|..|++.+++..+.++.+.+....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999998899999999999999999999999999999988776666643
Q ss_pred -cccCCC----------------CCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecC
Q 015450 160 -ASFGAG----------------EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR 210 (406)
Q Consensus 160 -~~~~~~----------------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~ 210 (406)
...... ..........+++.+++..++..++...| ..+|.+....+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLF-KSRGDIVRASLPPSK 261 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhc-cccccceeeeccCCC
Confidence 111111 11223455789999999999999999999 888888655554443
No 89
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.3e-13 Score=111.14 Aligned_cols=79 Identities=29% Similarity=0.547 Sum_probs=73.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
..++|||++|..+++|.-|...|-.||.|++|.++-| |+||||+|+..++|..||..||+.+|-||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4689999999999999999999999999999999765 8999999999999999999999999999999999999
Q ss_pred CCCCC
Q 015450 348 SPSNK 352 (406)
Q Consensus 348 ~~~~~ 352 (406)
+..-+
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 76543
No 90
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=2.5e-14 Score=111.94 Aligned_cols=81 Identities=23% Similarity=0.495 Sum_probs=73.7
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.-.++.-|||+|||.++||.+|..+|++||+|++|.+++|+.||+++||||+.|++..+...|++.|||..|.++ .|+
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR--tir 108 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR--TIR 108 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce--eEE
Confidence 345678899999999999999999999999999999999999999999999999999999999999999998654 555
Q ss_pred eee
Q 015450 157 LNW 159 (406)
Q Consensus 157 ~~~ 159 (406)
++.
T Consensus 109 VDH 111 (219)
T KOG0126|consen 109 VDH 111 (219)
T ss_pred eee
Confidence 543
No 91
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=2e-14 Score=112.45 Aligned_cols=110 Identities=22% Similarity=0.450 Sum_probs=90.3
Q ss_pred HHHHcCCCCCCCCCcceeeeecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcce
Q 015450 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGY 218 (406)
Q Consensus 139 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~ 218 (406)
-+..||..++...... +.+|.. ....+..||||||+++.||.+|.-.| +.||+|..|.+++|..||+++||
T Consensus 9 ~i~~lne~Elq~g~~~-~~SWH~-------~YkdsA~Iyiggl~~~LtEgDil~VF-SqyGe~vdinLiRDk~TGKSKGF 79 (219)
T KOG0126|consen 9 NIQKLNERELQLGIAD-KKSWHQ-------EYKDSAYIYIGGLPYELTEGDILCVF-SQYGEIVDINLIRDKKTGKSKGF 79 (219)
T ss_pred HHHHhhHHhhcccccc-ccchhh-------hcccceEEEECCCcccccCCcEEEEe-eccCceEEEEEEecCCCCcccce
Confidence 3445666666432222 334432 34566799999999999999999999 99999999999999999999999
Q ss_pred EEEEecCHHHHHHHHHHhcCccccCcceEecccCCCCcc
Q 015450 219 GFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (406)
Q Consensus 219 afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~~ 257 (406)
||+-|++..+...|+..|||..|.||.|+|.........
T Consensus 80 aFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Yk~p 118 (219)
T KOG0126|consen 80 AFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNYKKP 118 (219)
T ss_pred EEEEecCccceEEEEeccCCceecceeEEeeecccccCC
Confidence 999999999999999999999999999999876654443
No 92
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.41 E-value=2.6e-13 Score=108.45 Aligned_cols=82 Identities=23% Similarity=0.415 Sum_probs=76.3
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.-+...+|.|.||-..++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|+.|++.|+|..|+++.+.|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 44667889999999999999999999999999999999999999999999999999999999999999999988877666
Q ss_pred ee
Q 015450 157 LN 158 (406)
Q Consensus 157 ~~ 158 (406)
+.
T Consensus 89 ~a 90 (256)
T KOG4207|consen 89 MA 90 (256)
T ss_pred hh
Confidence 54
No 93
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=5.1e-13 Score=112.91 Aligned_cols=83 Identities=22% Similarity=0.415 Sum_probs=77.4
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
.+.-+||||+-|+.+++|..|+..|+.||.|..|+|++++.||+++|||||+|+++.+...|.+..+|..|.++.+.|-+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 36689999999999999999999999999999999999999999999999999999999999999999999888777776
Q ss_pred eec
Q 015450 158 NWA 160 (406)
Q Consensus 158 ~~~ 160 (406)
+..
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 543
No 94
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=4e-12 Score=116.74 Aligned_cols=144 Identities=22% Similarity=0.233 Sum_probs=93.3
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
..-..++|+|-|||.++++++|+.+|+.||+|..|+..+.+ ++.+||+|.|.-+|+.|++.|++.++.++.+. +
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k-~ 144 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKRIK-R 144 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc-C
Confidence 35568899999999999999999999999999997765554 48999999999999999999999998765444 1
Q ss_pred eeecccC-----------------CCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceE
Q 015450 157 LNWASFG-----------------AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYG 219 (406)
Q Consensus 157 ~~~~~~~-----------------~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~a 219 (406)
...+... .......-....+++ .|....+...++..+ +.+|.+.. +. ++..+..-
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~-~~~~~~~~-~~-----~~~~~hq~ 216 (549)
T KOG4660|consen 145 PGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHIS-SVDGSSPG-RE-----TPLLNHQR 216 (549)
T ss_pred CCcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcch-hccCcccc-cc-----ccchhhhh
Confidence 1111000 000000111223333 377777775555555 66666554 22 22223345
Q ss_pred EEEecCHHHHHHHHH
Q 015450 220 FVRFGDESEQLRAMT 234 (406)
Q Consensus 220 fv~f~~~~~a~~a~~ 234 (406)
|++|.+..++..+..
T Consensus 217 ~~~~~~~~s~a~~~~ 231 (549)
T KOG4660|consen 217 FVEFADNRSYAFSEP 231 (549)
T ss_pred hhhhccccchhhccc
Confidence 666666666644443
No 95
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.40 E-value=1.1e-12 Score=111.64 Aligned_cols=73 Identities=16% Similarity=0.341 Sum_probs=64.9
Q ss_pred cceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
.++|||+||++.+|+++|+++|+.||.|++|.|..++. ++|||||+|.+.++|+.|+. |+|..|.++.+.|..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEe
Confidence 67999999999999999999999999999999998853 56899999999999999995 999999766555544
No 96
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.3e-12 Score=97.18 Aligned_cols=80 Identities=24% Similarity=0.473 Sum_probs=72.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
.+.....|||.++.+..++++|.+.|..||.|+.+.+.-+ ||||+|+|++.++|.+|+..|||..|.|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3445788999999999999999999999999999988655 7899999999999999999999999999999999
Q ss_pred eccCCC
Q 015450 345 WGRSPS 350 (406)
Q Consensus 345 ~~~~~~ 350 (406)
|+-...
T Consensus 148 w~Fv~g 153 (170)
T KOG0130|consen 148 WCFVKG 153 (170)
T ss_pred EEEecC
Confidence 986443
No 97
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=2.3e-11 Score=110.84 Aligned_cols=155 Identities=21% Similarity=0.339 Sum_probs=116.6
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhccccee-EEEEEeeCC-CCCccc---eEEEEEccHHHHHHHHHHcCCCCCCCC
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQ-TGQIEG---YGFIEFISRAGAERVLQTFNGTPMPNG 151 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~-~~~~~~~~~-~~~~~g---~a~V~f~~~~~a~~a~~~l~~~~~~~~ 151 (406)
...-+++|||++||++++|+.|...|..||.+. ++-...... .-..+| |+|+.|+++.++...+..+.. ...
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 445678999999999999999999999999853 332211111 113456 999999999999888876432 111
Q ss_pred Ccceeeee-----------------cccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCC
Q 015450 152 EQNFRLNW-----------------ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR 214 (406)
Q Consensus 152 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~ 214 (406)
...+++.. +..-......-.+.+|||||+||.-++.++|..+|+..||.|.-+-|-+|++-+.
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 12222211 1111223344567899999999999999999999977999999999999988899
Q ss_pred CcceEEEEecCHHHHHHHHH
Q 015450 215 TKGYGFVRFGDESEQLRAMT 234 (406)
Q Consensus 215 ~~g~afv~f~~~~~a~~a~~ 234 (406)
.+|.|-|+|.+..+-.+||.
T Consensus 412 PkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CCCcceeeecccHHHHHHHh
Confidence 99999999999999999997
No 98
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.36 E-value=8.7e-13 Score=121.73 Aligned_cols=83 Identities=31% Similarity=0.555 Sum_probs=79.6
Q ss_pred ceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCC
Q 015450 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (406)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~ 253 (406)
+.+||||+++++++++|.++| +..|.|.+++++.|+.+|+.+||+|++|.+.+++..|++.||+.++.|+.|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~-~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIF-SGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHH-hccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 799999999999999999999 8999999999999999999999999999999999999999999999999999999987
Q ss_pred CCcc
Q 015450 254 KKTV 257 (406)
Q Consensus 254 ~~~~ 257 (406)
....
T Consensus 98 ~~~~ 101 (435)
T KOG0108|consen 98 RKNA 101 (435)
T ss_pred cchh
Confidence 6653
No 99
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.35 E-value=6.1e-12 Score=115.45 Aligned_cols=78 Identities=27% Similarity=0.472 Sum_probs=67.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeC----CC--eEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----GK--RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~----~~--g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
..+|||+|||.+++.++|+++|+.||.|+...|.. ++ +||||+|.+.+++..||.+ +-..|++++|.|+..+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 45599999999999999999999999999887743 22 8999999999999999997 57779999999999886
Q ss_pred CCCCC
Q 015450 349 PSNKQ 353 (406)
Q Consensus 349 ~~~~~ 353 (406)
.....
T Consensus 367 ~~~g~ 371 (419)
T KOG0116|consen 367 GFRGN 371 (419)
T ss_pred ccccc
Confidence 55443
No 100
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.34 E-value=1.6e-11 Score=101.69 Aligned_cols=171 Identities=28% Similarity=0.453 Sum_probs=133.7
Q ss_pred cceeeecCCCcccCHHH-H--hhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 81 IRTLWIGDLQYWMDETY-L--NTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 81 ~~~l~v~~lp~~~~~~~-l--~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
--..+++++-.++..+- | ...|+.+-.+...+++++. -+...+++|+.|..-..-.++-.+-+++.+ +...|++
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki--~~~~VR~ 172 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKI--GKPPVRL 172 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccc--cCcceee
Confidence 34456666666665544 3 5677777777777777775 477889999999988888887766666665 3334565
Q ss_pred eecccCCC--CCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHH
Q 015450 158 NWASFGAG--EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (406)
Q Consensus 158 ~~~~~~~~--~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 235 (406)
.......+ ...-.....+||+|.|.-+++++.|...| .+|-.....++++|..|++++||+||.|.+..++..|+..
T Consensus 173 a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf-~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 173 AAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAF-KKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred ccccccCCcccccCccccceeecccccccccHHHHHHHH-HhccchhhccccccccccccccceeeeecCHHHHHHHHHh
Confidence 54433222 22344567899999999999999999999 8999999999999999999999999999999999999999
Q ss_pred hcCccccCcceEecccCCCC
Q 015450 236 MNGVFCSTRPMRIGPATNKK 255 (406)
Q Consensus 236 ~~~~~~~g~~i~v~~~~~~~ 255 (406)
++++.++.+.|++..+..+.
T Consensus 252 m~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 252 MNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred hcccccccchhHhhhhhHHh
Confidence 99999999999987665544
No 101
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.34 E-value=3.4e-12 Score=106.67 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=64.7
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
...+|+|+||++.+|+++|+++|+.||.|.+|+|+++. +.++||||+|.++++|+.|+ .|+|..|.+..+.|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It 76 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCIT 76 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEE
Confidence 46799999999999999999999999999999999884 55589999999999999999 599999977654443
No 102
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.34 E-value=8.3e-12 Score=87.87 Aligned_cols=69 Identities=49% Similarity=0.815 Sum_probs=64.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
+|+|+||+..+++++|+++|+.||.|.++.+..+ +++|||+|.+.++|..|+..+++..++|+.|.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999765 68999999999999999999999999999999875
No 103
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=5.1e-12 Score=117.26 Aligned_cols=176 Identities=15% Similarity=0.305 Sum_probs=130.5
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
......++|++||..+++..+.+++..||.+....++.+..+|-++||||.+|.+......|++.|||..+.+..+.+..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34567799999999999999999999999999999999999999999999999999999999999999998776666655
Q ss_pred eecccCCCCCC------------------CCCCCceEEEcCC------CccccH----HHHHHHHHhhCCCcceeEEEec
Q 015450 158 NWASFGAGEKR------------------DDTPDHTIFVGDL------AADVTD----YMLQETFRARYPSTKGAKVVID 209 (406)
Q Consensus 158 ~~~~~~~~~~~------------------~~~~~~~l~v~~l------p~~~~~----~~l~~~f~~~~g~v~~~~~~~~ 209 (406)
........... ...++..|.+-|+ -++..- ++++..+ ..||.|..|.+..+
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec-~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTEC-AKFGAVRSVEIPRP 444 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHh-cccCceeEEecCCC
Confidence 44322111110 1112222333222 222222 2333444 57888888888665
Q ss_pred CC---CCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCC
Q 015450 210 RL---TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (406)
Q Consensus 210 ~~---~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~ 254 (406)
-. ..-..|..||+|.+.+++.+|.++|.|.++.+|.+...+-..-
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 21 2234678899999999999999999999999999988776543
No 104
>smart00360 RRM RNA recognition motif.
Probab=99.30 E-value=9.7e-12 Score=86.68 Aligned_cols=65 Identities=43% Similarity=0.723 Sum_probs=60.2
Q ss_pred EcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 280 VGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 280 V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
|+||+..+++++|+++|+.||.|.++.+..+ +++|||+|.+.++|.+|+..|++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999998665 5799999999999999999999999999999874
No 105
>PLN03213 repressor of silencing 3; Provisional
Probab=99.30 E-value=8.9e-12 Score=112.32 Aligned_cols=80 Identities=18% Similarity=0.337 Sum_probs=72.2
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCH--HHHHHHHHHhcCccccCcceE
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE--SEQLRAMTEMNGVFCSTRPMR 247 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~--~~a~~a~~~~~~~~~~g~~i~ 247 (406)
.....+||||||++++++++|+..| +.||.|.++.|+ +.+| ||||||+|.+. .++.+||..||+..+.|+.|+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravF-SeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIF-SPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 4455799999999999999999999 899999999999 4466 99999999987 689999999999999999999
Q ss_pred ecccCCC
Q 015450 248 IGPATNK 254 (406)
Q Consensus 248 v~~~~~~ 254 (406)
|+.+...
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9888743
No 106
>smart00362 RRM_2 RNA recognition motif.
Probab=99.29 E-value=1e-11 Score=86.86 Aligned_cols=68 Identities=31% Similarity=0.582 Sum_probs=62.1
Q ss_pred eeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCC
Q 015450 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (406)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~ 152 (406)
+|+|+|||..+++++|+++|+.||.|..+.+..+. +.++++|||+|.+.++|++|++.+++..+.+..
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 68 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP 68 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE
Confidence 58999999999999999999999999999998876 778899999999999999999999988775543
No 107
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=2.8e-13 Score=129.71 Aligned_cols=238 Identities=16% Similarity=0.118 Sum_probs=182.2
Q ss_pred CcceeeecCCCcccCHH-HHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 80 EIRTLWIGDLQYWMDET-YLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~-~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
..+...+.++.+...+. .++..|..+|.|+.|++......-....+.++.++...+++.|.. ..+.-+.++...+-+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 45566778887776665 678899999999999988744433444488999999999999876 3454554444444333
Q ss_pred ecccCCCCCC----CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHH
Q 015450 159 WASFGAGEKR----DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (406)
Q Consensus 159 ~~~~~~~~~~----~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 234 (406)
.+........ ......++|+.||+..+.+.+|...| ..++.+..+.+......++.+|+||++|...+++.+|+.
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~-~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERF-SPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhc-CccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 3222111111 11234579999999999999999999 889998888887666788999999999999999999997
Q ss_pred HhcCccccCcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC----
Q 015450 235 EMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---- 310 (406)
Q Consensus 235 ~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~---- 310 (406)
....+.++ ...|+|.|+++..|.++|+.+|+.+|++.++.+...
T Consensus 728 f~d~~~~g--------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gk 775 (881)
T KOG0128|consen 728 FRDSCFFG--------------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGK 775 (881)
T ss_pred hhhhhhhh--------------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccc
Confidence 44433322 235899999999999999999999999999987543
Q ss_pred -CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCC
Q 015450 311 -KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351 (406)
Q Consensus 311 -~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 351 (406)
+|.|+|.|.+..++.+++...+...+.-+.+.|....+...
T Consensus 776 pkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~ 817 (881)
T KOG0128|consen 776 PKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERD 817 (881)
T ss_pred cccceeccCCCcchhhhhcccchhhhhhhcCccccccCCccc
Confidence 78999999999999999999988888888888887665333
No 108
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=2.2e-11 Score=86.35 Aligned_cols=83 Identities=14% Similarity=0.273 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
...++-|||.|||+++|.++..++| ..||.|..+++-.... .+|.|||.|++..+|++|++.|+|..+.++.+.|.
T Consensus 15 pevnriLyirNLp~~ITseemydlF-Gkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLF-GKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHh-hcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 4456789999999999999999999 9999999999866544 48999999999999999999999999999999998
Q ss_pred ccCCCCc
Q 015450 250 PATNKKT 256 (406)
Q Consensus 250 ~~~~~~~ 256 (406)
+-.....
T Consensus 91 yyq~~~~ 97 (124)
T KOG0114|consen 91 YYQPEDA 97 (124)
T ss_pred ecCHHHH
Confidence 7765443
No 109
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=1e-11 Score=92.46 Aligned_cols=87 Identities=24% Similarity=0.353 Sum_probs=80.9
Q ss_pred CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
.+.....|||.++...+++++|.+.| ..||.|+.+.+..|+.||..+||++|+|.+.++|.+|+..+|+..+.+..|.|
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F-~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKF-ADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHH-hhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 34455789999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCc
Q 015450 249 GPATNKKT 256 (406)
Q Consensus 249 ~~~~~~~~ 256 (406)
.|+-.+..
T Consensus 147 Dw~Fv~gp 154 (170)
T KOG0130|consen 147 DWCFVKGP 154 (170)
T ss_pred EEEEecCC
Confidence 99876554
No 110
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.5e-12 Score=103.03 Aligned_cols=86 Identities=27% Similarity=0.488 Sum_probs=81.2
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecc
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 250 (406)
...++||||+|..++++.-|...| =.||.|.++.+..|-.+++.|||+||+|...|+|..|+..||+.++.||.|+|++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAF-IPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAF-IPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhcc-ccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 346799999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcc
Q 015450 251 ATNKKTV 257 (406)
Q Consensus 251 ~~~~~~~ 257 (406)
+.+.+..
T Consensus 87 AkP~kik 93 (298)
T KOG0111|consen 87 AKPEKIK 93 (298)
T ss_pred cCCcccc
Confidence 9986654
No 111
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.27 E-value=1.5e-11 Score=116.78 Aligned_cols=83 Identities=24% Similarity=0.535 Sum_probs=77.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCC
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 350 (406)
....++||||++|+..++++||+++|+.||.|.+|.+...++||||++....+|.+|+.+|....+.++.|+|.|+....
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999766
Q ss_pred CCC
Q 015450 351 NKQ 353 (406)
Q Consensus 351 ~~~ 353 (406)
.+.
T Consensus 497 ~ks 499 (894)
T KOG0132|consen 497 PKS 499 (894)
T ss_pred cch
Confidence 554
No 112
>smart00360 RRM RNA recognition motif.
Probab=99.27 E-value=1.7e-11 Score=85.37 Aligned_cols=67 Identities=31% Similarity=0.608 Sum_probs=61.7
Q ss_pred ecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCC
Q 015450 86 IGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (406)
Q Consensus 86 v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~ 152 (406)
|+||+..+++++|+++|+.||.|..+.+..++.+++++++|||+|.+.++|..|++.+++..+.++.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~ 67 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRP 67 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcE
Confidence 6799999999999999999999999999998878999999999999999999999999988875543
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.4e-10 Score=105.77 Aligned_cols=160 Identities=23% Similarity=0.300 Sum_probs=109.1
Q ss_pred CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCC--CCcc---eEEEEecCHHHHHHHHHHhcCccccC
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTG--RTKG---YGFVRFGDESEQLRAMTEMNGVFCST 243 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~--~~~g---~afv~f~~~~~a~~a~~~~~~~~~~g 243 (406)
...-+++||||+||++++|+.|...| ..||.+..---.+....+ -.+| |+|+.|+++..+..-+.++.. .-.+
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F-~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~ 332 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASF-GQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGN 332 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhc-ccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccc
Confidence 34567899999999999999999999 889975421111111111 2456 999999999988887776543 1111
Q ss_pred cceEecccCCCCc-c--cccccC---CccccCCCCCCCceEEEcCCCCCCCHHHHHHHhc-cCCcEEEEEeeCC------
Q 015450 244 RPMRIGPATNKKT-V--SASYQN---SQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFS-QYGQLVHVKIPAG------ 310 (406)
Q Consensus 244 ~~i~v~~~~~~~~-~--~~~~~~---~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~-~~G~i~~v~i~~~------ 310 (406)
-.+.|.....+.. . ..+... .-......-...+||||++||.-++.++|-.+|+ -||.|+.+-|..|
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 1222222221111 0 000000 0000122234679999999999999999999999 6999999999877
Q ss_pred CeEEEEEeCChHHHHHHHHH
Q 015450 311 KRCGFVQFADRSCAEEALRM 330 (406)
Q Consensus 311 ~g~afV~F~~~~~A~~A~~~ 330 (406)
+|-|-|+|.+..+-.+||.+
T Consensus 413 kGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCcceeeecccHHHHHHHhh
Confidence 79999999999999999985
No 114
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=3.1e-12 Score=103.35 Aligned_cols=148 Identities=22% Similarity=0.334 Sum_probs=120.9
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
....+||||.|+-..++++.|.++|-+.|.|++|.|..++ .++.+ ||||.|.++-++.-|++.+||..+.+..+.+++
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 4568999999999999999999999999999999998886 45666 999999999999999999999998776655543
Q ss_pred eecccCCCCCCCCCCCceEEEcC----CCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHH
Q 015450 158 NWASFGAGEKRDDTPDHTIFVGD----LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (406)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~v~~----lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 233 (406)
+.|+ |...++++.+.+.| +.-+.++.+++-.+. +++.+.++|+.+....+.-.++
T Consensus 84 -------------------r~G~shapld~r~~~ei~~~v~-s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~ 142 (267)
T KOG4454|consen 84 -------------------RCGNSHAPLDERVTEEILYEVF-SQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFAL 142 (267)
T ss_pred -------------------ccCCCcchhhhhcchhhheeee-cccCCCCCccccccc-cCCccCccchhhhhhhcCcHHh
Confidence 4444 66778888888999 788899999988776 5888999999988887777777
Q ss_pred HHhcCccccCcceEe
Q 015450 234 TEMNGVFCSTRPMRI 248 (406)
Q Consensus 234 ~~~~~~~~~g~~i~v 248 (406)
....+....-+.+.+
T Consensus 143 ~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 143 DLYQGLELFQKKVTI 157 (267)
T ss_pred hhhcccCcCCCCccc
Confidence 765555444444333
No 115
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.23 E-value=1.8e-11 Score=113.05 Aligned_cols=78 Identities=32% Similarity=0.619 Sum_probs=72.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCC
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 349 (406)
+.|||+||++++++|+|.++|+..|.|.++++..| |||||++|.+.++|.+|++.|+|.++.||.|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999654 799999999999999999999999999999999998865
Q ss_pred CCCC
Q 015450 350 SNKQ 353 (406)
Q Consensus 350 ~~~~ 353 (406)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 5543
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=3.7e-11 Score=103.99 Aligned_cols=81 Identities=30% Similarity=0.644 Sum_probs=73.1
Q ss_pred cCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcC-CccCCcEEEEeec
Q 015450 268 QSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQNIRLSWG 346 (406)
Q Consensus 268 ~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g-~~~~g~~l~v~~~ 346 (406)
....+....+|||++|...+++.+|+++|.+||+|+++.+...+++|||+|.+.++|+.|..++-. ..|+|++|.|.|+
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 445566789999999999999999999999999999999999999999999999999998877644 4489999999999
Q ss_pred cC
Q 015450 347 RS 348 (406)
Q Consensus 347 ~~ 348 (406)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 97
No 117
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.21 E-value=2.2e-10 Score=107.53 Aligned_cols=167 Identities=15% Similarity=0.097 Sum_probs=121.8
Q ss_pred eEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCC
Q 015450 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (406)
Q Consensus 175 ~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~ 254 (406)
.+-+.+..++.++.+++++|... .|....|..+...+...|-++|+|....++.+|+. -+...+-.|.+.+..+...
T Consensus 313 y~~~~gm~fn~~~nd~rkfF~g~--~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~~ 389 (944)
T KOG4307|consen 313 YNNYKGMEFNNDFNDGRKFFPGR--NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGNL 389 (944)
T ss_pred eeeecccccccccchhhhhcCcc--cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCcc
Confidence 45556788999999999999322 45566666666555558999999999999999986 4556666777777665544
Q ss_pred CcccccccCC------------------------ccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEE-EEeeC
Q 015450 255 KTVSASYQNS------------------------QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH-VKIPA 309 (406)
Q Consensus 255 ~~~~~~~~~~------------------------~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~-v~i~~ 309 (406)
.........+ ......-.....+|||..||..+++.++.++|+..-.|++ |.|.+
T Consensus 390 ~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~ 469 (944)
T KOG4307|consen 390 GRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR 469 (944)
T ss_pred ccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEecc
Confidence 3332111000 0001122345689999999999999999999999888887 66643
Q ss_pred C-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 310 G-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 310 ~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
. ++.|||.|..++++.+|...-+...++.|.|+|.
T Consensus 470 ~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 470 LPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 3 5799999999999999888766667888888884
No 118
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.1e-11 Score=103.67 Aligned_cols=82 Identities=24% Similarity=0.546 Sum_probs=75.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCC------eEEEEEeCChHHHHHHHHHhcCCccCCcEEEE
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK------RCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~------g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
...++.++|||..|+.-+++|||.-+|+.||.|.+|.+.+++ .+|||+|++.+++++|.-+|++..|+++.|.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 445678999999999999999999999999999999998874 49999999999999999999999999999999
Q ss_pred eeccCCCC
Q 015450 344 SWGRSPSN 351 (406)
Q Consensus 344 ~~~~~~~~ 351 (406)
.|+.+-.+
T Consensus 314 DFSQSVsk 321 (479)
T KOG0415|consen 314 DFSQSVSK 321 (479)
T ss_pred ehhhhhhh
Confidence 99887665
No 119
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.16 E-value=1.6e-10 Score=81.15 Aligned_cols=70 Identities=31% Similarity=0.586 Sum_probs=62.7
Q ss_pred eeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCc
Q 015450 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (406)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~ 153 (406)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ ..+++|||+|.+.++|..|++.+++..+.+..+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~ 70 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPL 70 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 5899999999999999999999999999999988644 778999999999999999999999987755433
No 120
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.14 E-value=3.9e-10 Score=98.71 Aligned_cols=171 Identities=22% Similarity=0.210 Sum_probs=122.5
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
...+..+-.++|+|..++.+|..+| +......-...+.....|+..|.+.|.|.+.|..+.|++ -+.+.+.++.|.|-
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff-~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievY 134 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFF-KGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVY 134 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHH-hhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeee
Confidence 3344566778999999999999999 554444444555555678889999999999999999986 56677888999998
Q ss_pred ccCCCCcccccccCCccccCC-CCCCCceEEEcCCCCCCCHHHHHHHhccC----CcEEEEEe-eC--C--CeEEEEEeC
Q 015450 250 PATNKKTVSASYQNSQVAQSD-DDPNNTTVFVGNLDSIVTDEHLRELFSQY----GQLVHVKI-PA--G--KRCGFVQFA 319 (406)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~V~nlp~~~t~e~l~~~F~~~----G~i~~v~i-~~--~--~g~afV~F~ 319 (406)
.+.......-....+...... ...+.-.|.+.+||+++++.|+.+||... |..+.|-+ .+ + .|-|||.|.
T Consensus 135 ka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa 214 (508)
T KOG1365|consen 135 KATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFA 214 (508)
T ss_pred ccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEec
Confidence 777665553322222211111 12335567899999999999999999632 23344433 22 2 689999999
Q ss_pred ChHHHHHHHHHhcCCccCCcEEEE
Q 015450 320 DRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 320 ~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
.+++|..|+.+ |...|+-|.|++
T Consensus 215 ~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 215 CEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred CHHHHHHHHHH-HHHHHhHHHHHH
Confidence 99999999997 656677776665
No 121
>smart00361 RRM_1 RNA recognition motif.
Probab=99.12 E-value=1.5e-10 Score=80.19 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=51.9
Q ss_pred HHHHhhhhh----cccceeEEE-EEeeCCC--CCccceEEEEEccHHHHHHHHHHcCCCCCCCCCc
Q 015450 95 ETYLNTCFA----HTGEVVAVK-VIRNKQT--GQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (406)
Q Consensus 95 ~~~l~~~f~----~~G~v~~~~-~~~~~~~--~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~ 153 (406)
+++|+++|+ +||.|.+|. +..++.+ ++++||+||+|.+.++|.+|++.|||+.+.++.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l 67 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTV 67 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 578888888 999999996 7777666 8999999999999999999999999999877544
No 122
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.11 E-value=2.5e-10 Score=100.86 Aligned_cols=176 Identities=21% Similarity=0.300 Sum_probs=137.3
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecc
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 250 (406)
....++|++++.+.+.+.++..++ ...|.+....+........+++++.+.|...+.+..|+.......+.++.+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~-~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFS-SEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccc-hhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 356789999999999999888888 7788777777777666788999999999999999999975555566666666555
Q ss_pred cCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHH
Q 015450 251 ATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCA 324 (406)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A 324 (406)
........ ...............++|++|++.+++++|+.+|..+|.|..++++.. +++|+|+|.+...+
T Consensus 165 ~~~~~~~~----~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~ 240 (285)
T KOG4210|consen 165 NTRRGLRP----KNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSK 240 (285)
T ss_pred cccccccc----cchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhH
Confidence 55444211 111111222233444559999999999999999999999999999754 68999999999999
Q ss_pred HHHHHHhcCCccCCcEEEEeeccCCCCC
Q 015450 325 EEALRMLNGTQLGGQNIRLSWGRSPSNK 352 (406)
Q Consensus 325 ~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 352 (406)
..++.. ....+.++.+.+.+.......
T Consensus 241 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 241 KLALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred HHHhhc-ccCcccCcccccccCCCCccc
Confidence 999997 888899999999998865543
No 123
>smart00361 RRM_1 RNA recognition motif.
Probab=99.09 E-value=4.3e-10 Score=77.97 Aligned_cols=61 Identities=18% Similarity=0.434 Sum_probs=54.6
Q ss_pred HHHHHHHHHh----hCCCcceeE-EEecCCC--CCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 187 DYMLQETFRA----RYPSTKGAK-VVIDRLT--GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 187 ~~~l~~~f~~----~~g~v~~~~-~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
+++|+++| + .||.|.++. ++.+..+ ++++|++||+|.+.++|.+|++.||+..+.|+.|++
T Consensus 2 ~~~l~~~~-~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREF-SEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHH-HHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 56788888 7 999999996 7777666 899999999999999999999999999999999876
No 124
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.05 E-value=3.1e-10 Score=100.29 Aligned_cols=176 Identities=19% Similarity=0.266 Sum_probs=141.1
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
+..+++|++++...+.+.++..++..+|.+..+.+........+++++++.|...+.+..|+.......+.++....-++
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 56889999999999999999999999999888888887778899999999999999999999854433443333222222
Q ss_pred eccc----CCCCCCCCCCCceEE-EcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHH
Q 015450 159 WASF----GAGEKRDDTPDHTIF-VGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (406)
Q Consensus 159 ~~~~----~~~~~~~~~~~~~l~-v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 233 (406)
.... ............+++ +++|+.++++++|.++| ..+|.|..+++..+..++.++|+++|.|........++
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~-~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHF-VSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhc-cCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 1111 111122233445555 99999999999999999 89999999999999999999999999999999999999
Q ss_pred HHhcCccccCcceEecccCCCCc
Q 015450 234 TEMNGVFCSTRPMRIGPATNKKT 256 (406)
Q Consensus 234 ~~~~~~~~~g~~i~v~~~~~~~~ 256 (406)
.. ....+.++++.+........
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred hc-ccCcccCcccccccCCCCcc
Confidence 87 88889999999988776644
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.00 E-value=1.1e-09 Score=88.24 Aligned_cols=79 Identities=24% Similarity=0.318 Sum_probs=70.7
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcc-cceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~-G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
.....++|..+|.-+.+.++..+|.++ |.|..+++.+++.||.++|||||+|++++.|+-|.+.||+..+.++-+.+.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 445668999999999999999999998 7788899889999999999999999999999999999999999776655555
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=5.5e-10 Score=108.04 Aligned_cols=163 Identities=19% Similarity=0.352 Sum_probs=138.9
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
...+++||++||...+++.+|+..| ..+|.|..|.+..-. -+.-.-|+||.|.+.+.+-.|+..+.+..|....+++.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af-~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAF-DESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhh-hhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 3467899999999999999999999 899999999886653 23335689999999999999998888888777666665
Q ss_pred ccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHH
Q 015450 250 PATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALR 329 (406)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~ 329 (406)
+... ....++.+++++|..-+....|...|..||.|..|.+....-+|+|.|++...|..|+.
T Consensus 447 lG~~-----------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 447 LGQP-----------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATH 509 (975)
T ss_pred cccc-----------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHH
Confidence 5443 22346789999999999999999999999999999998888899999999999999999
Q ss_pred HhcCCccCC--cEEEEeeccCCCC
Q 015450 330 MLNGTQLGG--QNIRLSWGRSPSN 351 (406)
Q Consensus 330 ~l~g~~~~g--~~l~v~~~~~~~~ 351 (406)
.|.|..|++ +.|+|.|+.....
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred HHhcCcCCCCCcccccccccCCCC
Confidence 999999975 6799999886544
No 127
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.97 E-value=5.7e-10 Score=92.57 Aligned_cols=144 Identities=27% Similarity=0.415 Sum_probs=108.5
Q ss_pred HHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCCcccccccCCccccCCC
Q 015450 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDD 271 (406)
Q Consensus 192 ~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 271 (406)
..| +.+-.+....++.+. .+..++++|+.|.......++-..-+++.+.-+.+++.....-... ...+.
T Consensus 118 ~~f-~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedP---------sl~ew 186 (290)
T KOG0226|consen 118 VVF-SEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDP---------SLAEW 186 (290)
T ss_pred hhh-ccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCc---------ccccC
Confidence 444 445455555555554 5666889999998888777777666777777777666544433322 12345
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeC------CCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA------GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~------~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
+....+||++.|..+++++.|-..|++|-.....++.+ ++|++||.|.+..++..|+..|+|..++.|.|+++.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 56678999999999999999999999997665555544 479999999999999999999999999999998754
Q ss_pred c
Q 015450 346 G 346 (406)
Q Consensus 346 ~ 346 (406)
.
T Consensus 267 S 267 (290)
T KOG0226|consen 267 S 267 (290)
T ss_pred h
Confidence 3
No 128
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.97 E-value=4.4e-09 Score=85.60 Aligned_cols=87 Identities=20% Similarity=0.359 Sum_probs=72.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEee-CC------CeEEEEEeCChHHHHHHHHHhcCCccC---CcEE
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP-AG------KRCGFVQFADRSCAEEALRMLNGTQLG---GQNI 341 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~-~~------~g~afV~F~~~~~A~~A~~~l~g~~~~---g~~l 341 (406)
....++|||.+||.++.-.+|..+|..|-..+.+.|. .+ +-+|||+|.+..+|..|+.+|||..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3457999999999999999999999999766666553 22 359999999999999999999999986 7899
Q ss_pred EEeeccCCCCCCCCCCC
Q 015450 342 RLSWGRSPSNKQAQPDP 358 (406)
Q Consensus 342 ~v~~~~~~~~~~~~~~~ 358 (406)
+++++|++.+..++..+
T Consensus 111 hiElAKSNtK~kr~k~s 127 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGS 127 (284)
T ss_pred EeeehhcCcccccCCCC
Confidence 99999988776654433
No 129
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.96 E-value=2e-09 Score=71.11 Aligned_cols=56 Identities=25% Similarity=0.571 Sum_probs=49.7
Q ss_pred HHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEeccc
Q 015450 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (406)
Q Consensus 190 l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~ 251 (406)
|+++| +.||.|..+.+..+. +++|||+|.+.++|..|++.||+..+.|+.|+|.++
T Consensus 1 L~~~f-~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLF-SKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHH-TTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHh-CCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899 899999998886553 689999999999999999999999999999999875
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.96 E-value=1.2e-09 Score=100.52 Aligned_cols=78 Identities=26% Similarity=0.461 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
...+.|||.+|...+...||+++|++||.|+-+++..+ ++|+||++.+.++|.++|..||-.+|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 45688999999999999999999999999999888665 789999999999999999999999999999999998
Q ss_pred cCCC
Q 015450 347 RSPS 350 (406)
Q Consensus 347 ~~~~ 350 (406)
++..
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 8643
No 131
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.8e-09 Score=93.76 Aligned_cols=86 Identities=24% Similarity=0.421 Sum_probs=80.9
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
..+.+.|||..|.+-++.++|.-+| +.||.|.+|.|++|..||.+..||||+|.+.++.++|.-.|++..|+.+.|.|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIF-SrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIF-SRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHH-hhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 4577899999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 015450 250 PATNKKT 256 (406)
Q Consensus 250 ~~~~~~~ 256 (406)
++.....
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 8876544
No 132
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=2.7e-10 Score=109.65 Aligned_cols=149 Identities=15% Similarity=0.242 Sum_probs=126.0
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
++..++||+||+..+.+.+|...|..+|.+..+++.-....++-+|+|||+|.+.+++.+|+...++..+ +
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g-------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G-------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h--------
Confidence 5567889999999999999999999999988888875666789999999999999999999986554443 2
Q ss_pred ecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcC
Q 015450 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (406)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 238 (406)
...++|.|+++..|.++++.++ +.+|.+.+.+++..+ .|+.+|.+||.|.+..++.+++...+.
T Consensus 736 --------------K~~v~i~g~pf~gt~e~~k~l~-~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 736 --------------KISVAISGPPFQGTKEELKSLA-SKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred --------------hhhhheeCCCCCCchHHHHhhc-cccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchh
Confidence 3478999999999999999999 899999999977665 899999999999999999999877666
Q ss_pred ccccCcceEecccC
Q 015450 239 VFCSTRPMRIGPAT 252 (406)
Q Consensus 239 ~~~~g~~i~v~~~~ 252 (406)
..+.-+.+.|..+.
T Consensus 800 ~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 800 AGKRENNGEVQVSN 813 (881)
T ss_pred hhhhhcCccccccC
Confidence 66655555555543
No 133
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=4.2e-10 Score=91.18 Aligned_cols=135 Identities=27% Similarity=0.369 Sum_probs=111.1
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecc
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 250 (406)
...++|||+|+...++|+.|.++| -..|.|..+.|..++ .++.+ ||||+|.++.+..-|++-+||..+.++.+.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~Elf-iqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~- 82 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELF-IQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT- 82 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHh-hccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc-
Confidence 346799999999999999999999 788999988876665 55666 99999999999999999999999988887774
Q ss_pred cCCCCcccccccCCccccCCCCCCCceEEEcC----CCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCCh
Q 015450 251 ATNKKTVSASYQNSQVAQSDDDPNNTTVFVGN----LDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADR 321 (406)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----lp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~ 321 (406)
++.++ |...++++.+...|+.-|.+..+++.++ +.++|+++.-.
T Consensus 83 ---------------------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~ 135 (267)
T KOG4454|consen 83 ---------------------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRL 135 (267)
T ss_pred ---------------------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhh
Confidence 44444 7777899999999999999999998653 67899988776
Q ss_pred HHHHHHHHHhcCCcc
Q 015450 322 SCAEEALRMLNGTQL 336 (406)
Q Consensus 322 ~~A~~A~~~l~g~~~ 336 (406)
-+.=.++....+...
T Consensus 136 ~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 136 CAVPFALDLYQGLEL 150 (267)
T ss_pred hcCcHHhhhhcccCc
Confidence 666667666555543
No 134
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.87 E-value=4.8e-09 Score=100.07 Aligned_cols=81 Identities=19% Similarity=0.364 Sum_probs=74.6
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecc
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 250 (406)
..++|||||+|+.++++++|.++| +.||+|.+|.++.. +++|||.+.+..+|.+|+.+|+...+.++.|+|.|
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~f-eefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLF-EEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHH-HhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 357899999999999999999999 89999999988654 78999999999999999999999999999999999
Q ss_pred cCCCCccc
Q 015450 251 ATNKKTVS 258 (406)
Q Consensus 251 ~~~~~~~~ 258 (406)
+..+....
T Consensus 492 a~g~G~ks 499 (894)
T KOG0132|consen 492 AVGKGPKS 499 (894)
T ss_pred eccCCcch
Confidence 99876653
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=3.5e-09 Score=102.68 Aligned_cols=166 Identities=18% Similarity=0.297 Sum_probs=138.1
Q ss_pred CCCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcce
Q 015450 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (406)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~ 155 (406)
-....+++||++||...+++.+|+..|..+|.|.+|.|-.-+ -++...|+||.|.+-+++-.|.-.+.+..|....+.+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 345678999999999999999999999999999999987653 3566679999999999999999889998887665555
Q ss_pred eeeecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHH
Q 015450 156 RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (406)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 235 (406)
.+... .....+.+|+++|..++....|...| ..||.|..|.+- +..-|++|.|++...+..|++.
T Consensus 446 glG~~--------kst~ttr~~sgglg~w~p~~~l~r~f-d~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 446 GLGQP--------KSTPTTRLQSGGLGPWSPVSRLNREF-DRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred ccccc--------ccccceeeccCCCCCCChHHHHHHHh-hccCcceeeecc------cCCcceeeecccCccchhhHHH
Confidence 54321 35667899999999999999999999 999999886652 2256999999999999999999
Q ss_pred hcCccccC--cceEecccCCCCcc
Q 015450 236 MNGVFCST--RPMRIGPATNKKTV 257 (406)
Q Consensus 236 ~~~~~~~g--~~i~v~~~~~~~~~ 257 (406)
+.+..+++ +.++|.++......
T Consensus 511 ~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred HhcCcCCCCCcccccccccCCCCC
Confidence 99999976 56778777765444
No 136
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.83 E-value=1.4e-08 Score=82.11 Aligned_cols=87 Identities=17% Similarity=0.255 Sum_probs=76.0
Q ss_pred CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceE
Q 015450 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (406)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~ 247 (406)
........+++..++....+.++..+|.+..|.|..+++-++..||.++|||||+|++.+.|+-|.+.||+..+.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 33455678999999999999999999944447888888889999999999999999999999999999999999999988
Q ss_pred ecccCCC
Q 015450 248 IGPATNK 254 (406)
Q Consensus 248 v~~~~~~ 254 (406)
+.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 8776654
No 137
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=1.4e-08 Score=88.20 Aligned_cols=82 Identities=22% Similarity=0.424 Sum_probs=69.6
Q ss_pred CCCCCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCc
Q 015450 74 QQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (406)
Q Consensus 74 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~ 153 (406)
.++.+...++|||++|-..+++.+|+++|.+||+|.++.+...+ ++|||+|.+.++|+.|.++.-. .+...+.
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n-~lvI~G~ 293 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFN-KLVINGF 293 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcc-eeeecce
Confidence 44566778999999999999999999999999999999999876 6999999999999999987544 3334566
Q ss_pred ceeeeeccc
Q 015450 154 NFRLNWASF 162 (406)
Q Consensus 154 ~~~~~~~~~ 162 (406)
.+++.|...
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 777778876
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=1.1e-08 Score=94.61 Aligned_cols=172 Identities=19% Similarity=0.196 Sum_probs=118.8
Q ss_pred CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceE
Q 015450 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (406)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~ 247 (406)
....+.++|+|-||+.++++++|+++| +.||+|+.++. +-..++.+||+|.|..+|++|+++|++.++.|+.++
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f-~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIF-GAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHH-Hhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 336677899999999999999999999 99999999665 444589999999999999999999999999999888
Q ss_pred ecccCCCCccccc---ccC-----CccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeC
Q 015450 248 IGPATNKKTVSAS---YQN-----SQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFA 319 (406)
Q Consensus 248 v~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~ 319 (406)
-.........-.. ..+ ........ .....++ +.|....+..-++.+|..+|.+..-+...-+..-|++|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg-~~~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~hq~~~~~~ 221 (549)
T KOG4660|consen 144 RPGGARRAMGLQSGTSFLNHFGSPLANSPPGG-WPRGQLF-GMLSPTRSSILLEHISSVDGSSPGRETPLLNHQRFVEFA 221 (549)
T ss_pred CCCcccccchhcccchhhhhccchhhcCCCCC-CcCCcce-eeeccchhhhhhhcchhccCccccccccchhhhhhhhhc
Confidence 2211111110000 000 00000011 1122232 338888888777778888888877333333447789999
Q ss_pred ChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 320 DRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 320 ~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
+..++..+...+ |..+.+....+.+..+
T Consensus 222 ~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 222 DNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred cccchhhcccCC-ceecCCCCceEEecCC
Confidence 999887777654 6777777777777665
No 139
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.78 E-value=1.9e-08 Score=92.73 Aligned_cols=84 Identities=23% Similarity=0.389 Sum_probs=77.4
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
....++|||.+|...+...+|+.+| ++||.|...+|+.+..+--.++|+||++.+.++|.+||+.|+.+.+.|+.|.|.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlF-SKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLF-SKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred cccccceeeeccccchhhhHHHHHH-HHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 3456789999999999999999999 999999999999988787789999999999999999999999999999999998
Q ss_pred ccCCC
Q 015450 250 PATNK 254 (406)
Q Consensus 250 ~~~~~ 254 (406)
.+...
T Consensus 481 kaKNE 485 (940)
T KOG4661|consen 481 KAKNE 485 (940)
T ss_pred ecccC
Confidence 87754
No 140
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.65 E-value=8.8e-08 Score=71.43 Aligned_cols=69 Identities=26% Similarity=0.505 Sum_probs=46.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCC-----ccCCcEEEEe
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGT-----QLGGQNIRLS 344 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~-----~~~g~~l~v~ 344 (406)
+.|+|.++...++.++|++.|+.||.|..|++.++...|+|.|.+.++|++|+..+... .|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 56899999999999999999999999999999999999999999999999999987544 4566655554
No 141
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.62 E-value=7.4e-08 Score=91.24 Aligned_cols=82 Identities=38% Similarity=0.721 Sum_probs=74.4
Q ss_pred cCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEee---------CCCeEEEEEeCChHHHHHHHHHhcCCccCC
Q 015450 268 QSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP---------AGKRCGFVQFADRSCAEEALRMLNGTQLGG 338 (406)
Q Consensus 268 ~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~---------~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 338 (406)
....++..+.|||+||+..++++.|...|..||.|..|+|+ +++.|+||-|.+..+|++|++.|+|..+.+
T Consensus 167 fDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 167 FDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 34456788999999999999999999999999999999994 347899999999999999999999999999
Q ss_pred cEEEEeeccCC
Q 015450 339 QNIRLSWGRSP 349 (406)
Q Consensus 339 ~~l~v~~~~~~ 349 (406)
..+++-|++.-
T Consensus 247 ~e~K~gWgk~V 257 (877)
T KOG0151|consen 247 YEMKLGWGKAV 257 (877)
T ss_pred eeeeecccccc
Confidence 99999999743
No 142
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.61 E-value=9.1e-09 Score=91.44 Aligned_cols=151 Identities=21% Similarity=0.350 Sum_probs=121.4
Q ss_pred ceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCcc-ccCcceEecccC
Q 015450 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPAT 252 (406)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~-~~g~~i~v~~~~ 252 (406)
+.+|++||...++..+|..+|...--....-.++ ..||+||.+.+...|.+|++.++++. +.|..+.+....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4689999999999999999993221111111111 26899999999999999999998764 788999988877
Q ss_pred CCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEee-CCCe--EEEEEeCChHHHHHHHH
Q 015450 253 NKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP-AGKR--CGFVQFADRSCAEEALR 329 (406)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~-~~~g--~afV~F~~~~~A~~A~~ 329 (406)
.+... ++++-|.|++...-||.|..++..||.++.|... .+.. ..-|+|.+.+.+..||.
T Consensus 75 ~kkqr-----------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~ 137 (584)
T KOG2193|consen 75 PKKQR-----------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIH 137 (584)
T ss_pred hHHHH-----------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 76653 5668899999999999999999999999988763 3332 34578999999999999
Q ss_pred HhcCCccCCcEEEEeeccC
Q 015450 330 MLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 330 ~l~g~~~~g~~l~v~~~~~ 348 (406)
.|+|..+....++|.|--.
T Consensus 138 kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 138 KLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhcchHhhhhhhhcccCch
Confidence 9999999999999988553
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.61 E-value=3.1e-07 Score=66.71 Aligned_cols=81 Identities=21% Similarity=0.279 Sum_probs=67.0
Q ss_pred cceeeecCCCcccCHHHHhhhhhcc--cceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCC--Cccee
Q 015450 81 IRTLWIGDLQYWMDETYLNTCFAHT--GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG--EQNFR 156 (406)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~--G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~--~~~~~ 156 (406)
.+||+|+|||...|.++|.+++... |...-+-+..|..++.+.|||||.|.+.+.|.+..+.++|+.|... .+.+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 3689999999999999999888653 5566777888888999999999999999999999999999998642 34555
Q ss_pred eeecc
Q 015450 157 LNWAS 161 (406)
Q Consensus 157 ~~~~~ 161 (406)
+.++.
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 55544
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.60 E-value=1.7e-07 Score=80.25 Aligned_cols=77 Identities=29% Similarity=0.541 Sum_probs=70.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
..+...+||+|+.+.++.+++..+|+.||.|..+.|..+ |+|+||+|.+.+.+.+|+. |++..|.++.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 446788999999999999999999999999998888654 7899999999999999999 999999999999999
Q ss_pred ccCC
Q 015450 346 GRSP 349 (406)
Q Consensus 346 ~~~~ 349 (406)
.+.+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8866
No 145
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.59 E-value=2.1e-07 Score=79.28 Aligned_cols=81 Identities=33% Similarity=0.474 Sum_probs=70.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
.....+|+|.||+..++++||+++|..||.++.+-+.-+ .|+|-|.|...++|.+|++.++|..++|+.|++...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 344578999999999999999999999999988888543 689999999999999999999999999999998877
Q ss_pred cCCCCC
Q 015450 347 RSPSNK 352 (406)
Q Consensus 347 ~~~~~~ 352 (406)
.+....
T Consensus 160 ~~~~~~ 165 (243)
T KOG0533|consen 160 SSPSQS 165 (243)
T ss_pred cCcccc
Confidence 655543
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.56 E-value=4.6e-07 Score=65.83 Aligned_cols=75 Identities=23% Similarity=0.358 Sum_probs=62.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccC--CcEEEEEeeC------CCeEEEEEeCChHHHHHHHHHhcCCccC----CcEEEE
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQY--GQLVHVKIPA------GKRCGFVQFADRSCAEEALRMLNGTQLG----GQNIRL 343 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~--G~i~~v~i~~------~~g~afV~F~~~~~A~~A~~~l~g~~~~----g~~l~v 343 (406)
+||.|+|||...|.++|.+++... |...-+.++- +.|+|||.|.++++|.+-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999998753 5555555543 3799999999999999999999999875 567899
Q ss_pred eeccCCC
Q 015450 344 SWGRSPS 350 (406)
Q Consensus 344 ~~~~~~~ 350 (406)
.||+-..
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9988543
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.55 E-value=5.5e-07 Score=61.94 Aligned_cols=69 Identities=23% Similarity=0.436 Sum_probs=48.9
Q ss_pred ceEEEcCCCCCCCHH----HHHHHhccCC-cEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 276 TTVFVGNLDSIVTDE----HLRELFSQYG-QLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e----~l~~~F~~~G-~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
..|+|.|||.+.+.. .|++++..+| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+-|+.|.|+|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 469999999988764 4667777886 777773 57999999999999999999999999999999999753
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.52 E-value=5.2e-08 Score=85.94 Aligned_cols=209 Identities=15% Similarity=0.183 Sum_probs=122.8
Q ss_pred ceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCC---CCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ---TGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~---~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
..|.|.||.+.+|.++++.||.-.|.|.++.|+.... -......|||.|.+...+..|-..-|..++ ++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfv-dr------- 79 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFV-DR------- 79 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceee-ee-------
Confidence 4789999999999999999999999999999987432 224456899999999999988764443333 21
Q ss_pred ecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcC
Q 015450 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (406)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 238 (406)
.|+|--....+-.+.. +| ..++.-..+ ..++ ..+|
T Consensus 80 ----------------aliv~p~~~~~~p~r~--af-~~l~~~nav-------------------------prll-~pdg 114 (479)
T KOG4676|consen 80 ----------------ALIVRPYGDEVIPDRF--AF-VELADQNAV-------------------------PRLL-PPDG 114 (479)
T ss_pred ----------------eEEEEecCCCCCccHH--HH-HhcCccccc-------------------------cccc-CCCC
Confidence 1222111111111111 33 222221111 1111 0122
Q ss_pred ccccCcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeC--CCeEEEE
Q 015450 239 VFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA--GKRCGFV 316 (406)
Q Consensus 239 ~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~--~~g~afV 316 (406)
..+....+...-.......................-.++|+|.+|...+...++.+.|..+|.|....+-. +.-+|.|
T Consensus 115 ~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~ 194 (479)
T KOG4676|consen 115 VLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSH 194 (479)
T ss_pred ccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhh
Confidence 22222222111111111111100000011111122348899999999999999999999999998776633 3567889
Q ss_pred EeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 317 QFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 317 ~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
+|........|+.. +|.++.-...++.
T Consensus 195 sf~~qts~~halr~-~gre~k~qhsr~a 221 (479)
T KOG4676|consen 195 SFRKQTSSKHALRS-HGRERKRQHSRRA 221 (479)
T ss_pred hHhhhhhHHHHHHh-cchhhhhhhhhhh
Confidence 99999888889884 7887764433333
No 149
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.52 E-value=3.2e-07 Score=78.21 Aligned_cols=79 Identities=23% Similarity=0.365 Sum_probs=69.3
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
.....+|+|.||+..+++++|+++|..||.+..+.+-.++ +|++.|.|-|.|...++|..|++.+++..+.+..+.+.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445779999999999999999999999988888888886 799999999999999999999999999888776644443
No 150
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.52 E-value=1.2e-06 Score=80.96 Aligned_cols=73 Identities=23% Similarity=0.400 Sum_probs=58.8
Q ss_pred ceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
.+|||+|||.+++.++|+++| +.||.|+...|......++..+|+||+|.+.+++..|+++. ...++++.+.|
T Consensus 289 ~~i~V~nlP~da~~~~l~~~F-k~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~V 361 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVF-KQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNV 361 (419)
T ss_pred cceEeecCCCCCCHHHHHHHH-hhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEE
Confidence 459999999999999999999 99999999988765544555599999999999999999743 44444444444
No 151
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.46 E-value=3.2e-07 Score=78.55 Aligned_cols=81 Identities=21% Similarity=0.491 Sum_probs=72.5
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
..-+.+.+||+|+...+|.+++...|+.||.|..+.+..++..+.+++|+||+|.+.+.++.++. ||+..+.+..+.+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 34457889999999999999999999999999999999999999999999999999999999999 99999977665554
Q ss_pred ee
Q 015450 157 LN 158 (406)
Q Consensus 157 ~~ 158 (406)
..
T Consensus 176 ~~ 177 (231)
T KOG4209|consen 176 LK 177 (231)
T ss_pred ee
Confidence 43
No 152
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.26 E-value=2.1e-06 Score=55.19 Aligned_cols=52 Identities=25% Similarity=0.477 Sum_probs=44.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHH
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEAL 328 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~ 328 (406)
+.|-|.+.+.+.. ++|..+|+.||.|+++.+...+.+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 4577888887655 455669999999999999988999999999999999985
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.19 E-value=2.5e-07 Score=82.47 Aligned_cols=156 Identities=14% Similarity=0.264 Sum_probs=113.7
Q ss_pred ceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeecc
Q 015450 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (406)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~ 161 (406)
..+|++||.+.++..+|+.+|...-.-.+-.++... ||+||.+.+...|.+|++.++++. ...+....+...-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~------gyafvd~pdq~wa~kaie~~sgk~-elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS------GYAFVDCPDQQWANKAIETLSGKV-ELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec------ceeeccCCchhhhhhhHHhhchhh-hhcCceeeccchh
Confidence 468999999999999999999775322222222222 799999999999999999988843 2233333332221
Q ss_pred cCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccc
Q 015450 162 FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (406)
Q Consensus 162 ~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~ 241 (406)
. ....++.+-|.|++.....+.|..++ ..||.++.|..+... .-....-|+|...+.+..|+..+++..+
T Consensus 75 ~------kkqrsrk~Qirnippql~wevld~Ll-~qyg~ve~~eqvnt~---~etavvnvty~~~~~~~~ai~kl~g~Q~ 144 (584)
T KOG2193|consen 75 P------KKQRSRKIQIRNIPPQLQWEVLDSLL-AQYGTVENCEQVNTD---SETAVVNVTYSAQQQHRQAIHKLNGPQL 144 (584)
T ss_pred h------HHHHhhhhhHhcCCHHHHHHHHHHHH-hccCCHhHhhhhccc---hHHHHHHHHHHHHHHHHHHHHhhcchHh
Confidence 1 12345568899999999999999999 899999998764321 1112234678888999999999999999
Q ss_pred cCcceEecccCCC
Q 015450 242 STRPMRIGPATNK 254 (406)
Q Consensus 242 ~g~~i~v~~~~~~ 254 (406)
.+..+++.+....
T Consensus 145 en~~~k~~YiPde 157 (584)
T KOG2193|consen 145 ENQHLKVGYIPDE 157 (584)
T ss_pred hhhhhhcccCchh
Confidence 9999888776543
No 154
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.13 E-value=1.2e-05 Score=70.91 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=68.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEE--------Ee------eCCCeEEEEEeCChHHHHHHHHHhcCCccC
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV--------KI------PAGKRCGFVQFADRSCAEEALRMLNGTQLG 337 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v--------~i------~~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 337 (406)
.....+|||-+|+..+++++|.++|.++|.|..- .| ...|+.|.|+|+|...|+.|+.-++++.|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 4457889999999999999999999999987532 22 123789999999999999999999999999
Q ss_pred CcEEEEeeccCCCC
Q 015450 338 GQNIRLSWGRSPSN 351 (406)
Q Consensus 338 g~~l~v~~~~~~~~ 351 (406)
+..|+|.++.....
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999886554
No 155
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.11 E-value=4.9e-06 Score=79.25 Aligned_cols=81 Identities=27% Similarity=0.579 Sum_probs=68.7
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeC---CCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcce
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNK---QTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~---~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~ 155 (406)
...+.|||+||++.++++.|...|..||.|.+++|+.-+ ...+.+.|+||.|.+..+|++|++.|+|..+.. ..+
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~--~e~ 249 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME--YEM 249 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee--eee
Confidence 456779999999999999999999999999999997643 235667899999999999999999999988854 455
Q ss_pred eeeecc
Q 015450 156 RLNWAS 161 (406)
Q Consensus 156 ~~~~~~ 161 (406)
++.|..
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 666663
No 156
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.09 E-value=1.2e-05 Score=58.99 Aligned_cols=71 Identities=23% Similarity=0.315 Sum_probs=54.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCcEEEEE-------------eeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcE-
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVK-------------IPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQN- 340 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~-------------i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~- 340 (406)
.+-|.|-+.|.. ....|.++|++||+|.+.. +..+.+...|+|++..+|.+||.. ||..|+|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 456888899887 5567889999999998885 566788999999999999999996 999998864
Q ss_pred EEEeecc
Q 015450 341 IRLSWGR 347 (406)
Q Consensus 341 l~v~~~~ 347 (406)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4577764
No 157
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.03 E-value=1.5e-05 Score=71.77 Aligned_cols=66 Identities=23% Similarity=0.420 Sum_probs=56.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-------------------CeEEEEEeCChHHHHHHHH
Q 015450 269 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-------------------KRCGFVQFADRSCAEEALR 329 (406)
Q Consensus 269 ~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-------------------~g~afV~F~~~~~A~~A~~ 329 (406)
......+++|.+.|||.+-.-|.|.++|+.+|.|..|+|... +-+|+|+|++.+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 344467899999999999988999999999999999999432 4589999999999999999
Q ss_pred HhcCC
Q 015450 330 MLNGT 334 (406)
Q Consensus 330 ~l~g~ 334 (406)
.|+..
T Consensus 305 ~~~~e 309 (484)
T KOG1855|consen 305 LLNPE 309 (484)
T ss_pred hhchh
Confidence 87543
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.00 E-value=1.5e-05 Score=69.32 Aligned_cols=74 Identities=22% Similarity=0.494 Sum_probs=62.3
Q ss_pred CceEEEcCCCCCCCHHH----H--HHHhccCCcEEEEEeeCCC-------e--EEEEEeCChHHHHHHHHHhcCCccCCc
Q 015450 275 NTTVFVGNLDSIVTDEH----L--RELFSQYGQLVHVKIPAGK-------R--CGFVQFADRSCAEEALRMLNGTQLGGQ 339 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~----l--~~~F~~~G~i~~v~i~~~~-------g--~afV~F~~~~~A~~A~~~l~g~~~~g~ 339 (406)
.+.+||-+|+..+..|+ | .++|.+||.|..|.+.+.. + -.||+|.+.++|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 46689999999886666 2 4689999999999996531 2 239999999999999999999999999
Q ss_pred EEEEeeccC
Q 015450 340 NIRLSWGRS 348 (406)
Q Consensus 340 ~l~v~~~~~ 348 (406)
.|+..+...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999988764
No 159
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.85 E-value=2.5e-05 Score=68.29 Aligned_cols=80 Identities=18% Similarity=0.373 Sum_probs=69.7
Q ss_pred CCCCCcceeeecCCCcccCHHHHhhhhhcccc--eeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCc
Q 015450 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGE--VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (406)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~--v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~ 153 (406)
........+||+||-|.+|++||.+.+...|. +.++++..++.+|++||||+|...+..++++.++.|-.+.|.+..-
T Consensus 75 s~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 75 SSEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred cccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 34556667899999999999999999988775 7888999999999999999999999999999999999998877654
Q ss_pred ce
Q 015450 154 NF 155 (406)
Q Consensus 154 ~~ 155 (406)
+|
T Consensus 155 ~V 156 (498)
T KOG4849|consen 155 TV 156 (498)
T ss_pred ee
Confidence 43
No 160
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.73 E-value=0.00014 Score=50.35 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=46.9
Q ss_pred ceEEEcCCCccccHHHHHHHHH---hhCCC-cceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 174 HTIFVGDLAADVTDYMLQETFR---ARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~---~~~g~-v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
..|+|.|||.+.+...|+.-+. ..+|. |..+ +.+.|+|.|.+.+.|.+|.+.|++..+.|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999988877665441 45553 3222 14689999999999999999999999999999999
Q ss_pred ccCCCCc
Q 015450 250 PATNKKT 256 (406)
Q Consensus 250 ~~~~~~~ 256 (406)
+......
T Consensus 73 ~~~~~r~ 79 (90)
T PF11608_consen 73 FSPKNRE 79 (90)
T ss_dssp SS--S--
T ss_pred EcCCccc
Confidence 8865443
No 161
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.70 E-value=8.8e-05 Score=55.38 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=39.6
Q ss_pred ceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCC
Q 015450 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGT 146 (406)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~ 146 (406)
+.|.|.++...++.++|+++|+.||.|.-|.+.+.. ..|||.|.+.++|+.|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 468899999999999999999999999998888765 48999999999999999876543
No 162
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.63 E-value=9.7e-05 Score=65.40 Aligned_cols=86 Identities=21% Similarity=0.247 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcce--------eEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccc
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG--------AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~ 241 (406)
.....++||-+|+..+++++|.++| ..++.|.. +.|-++..|++.|+-|.|.|.+...|+.|+.-++++.+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f-~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFF-LQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHH-hhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 4456789999999999999999999 88887753 45667888999999999999999999999999999999
Q ss_pred cCcceEecccCCCCc
Q 015450 242 STRPMRIGPATNKKT 256 (406)
Q Consensus 242 ~g~~i~v~~~~~~~~ 256 (406)
.+..|+|..+..+..
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 999999988876654
No 163
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.62 E-value=0.00016 Score=60.91 Aligned_cols=98 Identities=23% Similarity=0.335 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcCccccCcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEE
Q 015450 227 SEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVK 306 (406)
Q Consensus 227 ~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~ 306 (406)
.-|+.|...|++....++.++|.++.. ..|+|.||..-++.|.|.+.|+.||.|....
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~----------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av 62 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH----------------------AELYVVNLMQGASNDLLEQAFRRFGPIERAV 62 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc----------------------ceEEEEecchhhhhHHHHHhhhhcCccchhe
Confidence 346677778999999999999999886 2399999999999999999999999998776
Q ss_pred eeCC-----CeEEEEEeCChHHHHHHHHHhcCCc----cCCcEEEEeec
Q 015450 307 IPAG-----KRCGFVQFADRSCAEEALRMLNGTQ----LGGQNIRLSWG 346 (406)
Q Consensus 307 i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~----~~g~~l~v~~~ 346 (406)
+..| .+-++|+|...-.|.+|+..+.-.- ..++..-|.-.
T Consensus 63 ~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 63 AKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred eeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 6433 4678999999999999999874322 34555555443
No 164
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.58 E-value=0.00015 Score=62.06 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=49.9
Q ss_pred HHHHHHHhccCCcEEEEEeeCCC-------eEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 289 DEHLRELFSQYGQLVHVKIPAGK-------RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 289 ~e~l~~~F~~~G~i~~v~i~~~~-------g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
++++++.+++||.|.+|.|.... --.||+|+..++|.+|+..|||+.|+||.++.-|-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 46788999999999999885432 25799999999999999999999999999987663
No 165
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.57 E-value=3.9e-05 Score=64.44 Aligned_cols=67 Identities=28% Similarity=0.547 Sum_probs=59.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC--------------C----eEEEEEeCChHHHHHHHHHhcCCc
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG--------------K----RCGFVQFADRSCAEEALRMLNGTQ 335 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~--------------~----g~afV~F~~~~~A~~A~~~l~g~~ 335 (406)
..-+||+++||..+.-..|+++|+.||.|-+|.+-.. + .-|.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999999432 0 147899999999999999999999
Q ss_pred cCCcE
Q 015450 336 LGGQN 340 (406)
Q Consensus 336 ~~g~~ 340 (406)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.55 E-value=0.00015 Score=46.62 Aligned_cols=52 Identities=23% Similarity=0.356 Sum_probs=42.4
Q ss_pred ceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHH
Q 015450 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140 (406)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~ 140 (406)
+.|-|.+.+.+..+. +..+|..||+|..+.+-... .+.||+|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 568888988776654 56699999999998876333 59999999999999985
No 167
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.49 E-value=0.00013 Score=63.88 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=64.3
Q ss_pred CCceEEEcCCCccccHHHHHHHHHhhCC--CcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 172 PDHTIFVGDLAADVTDYMLQETFRARYP--STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
...++|||||-|++|+++|.+.+ ...| .+.+++++.++.+|.+||||+|...+..+.++.++-|-.+.|.|..-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~-~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKAL-QSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHH-HhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 44589999999999999999998 5555 4556677788889999999999999999999999988888888876555
No 168
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.45 E-value=5.7e-05 Score=63.69 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=49.3
Q ss_pred HHHHHHhc-cCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 290 EHLRELFS-QYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 290 e~l~~~F~-~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
|+|...|+ +||+|+.+.+-.+ +|-++|.|...++|++|+..||+..|.|+.|...+.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44555555 8999999988655 6789999999999999999999999999999887654
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.44 E-value=0.0001 Score=62.05 Aligned_cols=73 Identities=25% Similarity=0.437 Sum_probs=61.7
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCC--------CCcc----ceEEEEEccHHHHHHHHHHcCCCC
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQT--------GQIE----GYGFIEFISRAGAERVLQTFNGTP 147 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~--------~~~~----g~a~V~f~~~~~a~~a~~~l~~~~ 147 (406)
..-.||+++||+.++...|+++|+.||.|-.|-+.....+ |.+. .-+||+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3456999999999999999999999999999999876554 2322 237899999999999999999999
Q ss_pred CCCCC
Q 015450 148 MPNGE 152 (406)
Q Consensus 148 ~~~~~ 152 (406)
|.++.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 97753
No 170
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.38 E-value=0.00054 Score=57.83 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=75.9
Q ss_pred HHHHHHHHHHcCCCCCCCCCcceeeeecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCC
Q 015450 133 RAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212 (406)
Q Consensus 133 ~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~ 212 (406)
..-|+.|..+|++....++.+.++.... ..|+|.||..-++.+.+.+.| +.||.|....++.|. .
T Consensus 4 rt~ae~ak~eLd~~~~~~~~lr~rfa~~-------------a~l~V~nl~~~~sndll~~~f-~~fg~~e~av~~vD~-r 68 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFPKGRSLRVRFAMH-------------AELYVVNLMQGASNDLLEQAF-RRFGPIERAVAKVDD-R 68 (275)
T ss_pred ccHHHHHHHhcCCCCCCCCceEEEeecc-------------ceEEEEecchhhhhHHHHHhh-hhcCccchheeeecc-c
Confidence 3457777788999999777666665321 589999999999999999999 899999998888775 6
Q ss_pred CCCcceEEEEecCHHHHHHHHHHhcC
Q 015450 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238 (406)
Q Consensus 213 ~~~~g~afv~f~~~~~a~~a~~~~~~ 238 (406)
++..+-++|+|...-.+.+|+..++.
T Consensus 69 ~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 69 GKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ccccccchhhhhcchhHHHHHHHhcc
Confidence 77888999999999999999987743
No 171
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.36 E-value=0.00028 Score=63.79 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=60.6
Q ss_pred CCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEec---CCCC--C--------CcceEEEEecCHHHHHHH
Q 015450 166 EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVID---RLTG--R--------TKGYGFVRFGDESEQLRA 232 (406)
Q Consensus 166 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~---~~~~--~--------~~g~afv~f~~~~~a~~a 232 (406)
-..++..+++|.+.|||.+-.-+.|.++| ..+|.|..|+|..- +.+. . .+-+|+|+|...+.|.+|
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiF-g~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA 302 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIF-GTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKA 302 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHh-hcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHH
Confidence 33456789999999999999999999999 99999999998765 2221 1 256789999999999999
Q ss_pred HHHhcCccc
Q 015450 233 MTEMNGVFC 241 (406)
Q Consensus 233 ~~~~~~~~~ 241 (406)
.+.++...-
T Consensus 303 ~e~~~~e~~ 311 (484)
T KOG1855|consen 303 RELLNPEQN 311 (484)
T ss_pred HHhhchhhh
Confidence 987765443
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.30 E-value=0.001 Score=51.88 Aligned_cols=56 Identities=30% Similarity=0.548 Sum_probs=46.8
Q ss_pred HHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 290 EHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 290 e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
++|.+.|+.||+|.-|++..+ .-+|+|.+-+.|.+|+. ++|.+++|+.|+|+...+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC--eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 367788999999998888765 78999999999999999 699999999999987553
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.00056 Score=64.03 Aligned_cols=73 Identities=19% Similarity=0.356 Sum_probs=59.9
Q ss_pred CCCCcceeeecCCCcccC------HHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCC
Q 015450 77 QPGEIRTLWIGDLQYWMD------ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~------~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~ 150 (406)
.+.....|+|.|+|---. ..-|..+|+++|.++.+.+..+.. |.++||.|++|.+..+|..|++.|||+.+.-
T Consensus 54 ~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 54 AEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 446677899999984321 244568899999999999888865 5599999999999999999999999988854
No 174
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.17 E-value=0.0004 Score=65.34 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=68.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhc-cCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCcc---CCcEEEEeec
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFS-QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQL---GGQNIRLSWG 346 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~-~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~---~g~~l~v~~~ 346 (406)
....+++|+|.||-.-+|.-.|+.++. ..|.|++.-|.+=|..|||.|.+.++|...+.+|||..+ +.+.|.+.|+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 445689999999999999999999998 456777665555578999999999999999999999986 6788999998
Q ss_pred cCCCC
Q 015450 347 RSPSN 351 (406)
Q Consensus 347 ~~~~~ 351 (406)
.....
T Consensus 520 ~~del 524 (718)
T KOG2416|consen 520 RADEL 524 (718)
T ss_pred chhHH
Confidence 75443
No 175
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=97.09 E-value=0.0014 Score=61.33 Aligned_cols=68 Identities=15% Similarity=0.283 Sum_probs=55.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcc--CCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCC--ccCCcEEEE
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQ--YGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGT--QLGGQNIRL 343 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~--~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~--~~~g~~l~v 343 (406)
.+.|+|+.|++.+.+|+|+.+|+. +-.+.+|++.-+. -.||+|++..||++|.+.|... +|.|+.|..
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 467889999999999999999975 7789999886553 3699999999999998877543 377776643
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0013 Score=61.75 Aligned_cols=70 Identities=26% Similarity=0.400 Sum_probs=57.0
Q ss_pred CceEEEcCCCCCC--CH----HHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccC-CcEEE
Q 015450 275 NTTVFVGNLDSIV--TD----EHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLG-GQNIR 342 (406)
Q Consensus 275 ~~~l~V~nlp~~~--t~----e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~l~ 342 (406)
..+|+|.|+|--- .. .-|..+|+++|.|..+.++.+ +|+.|++|.+..+|+.|++.|||+.|+ .+...
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 5678999998642 22 335678999999999999744 789999999999999999999999975 56666
Q ss_pred Ee
Q 015450 343 LS 344 (406)
Q Consensus 343 v~ 344 (406)
|.
T Consensus 138 v~ 139 (698)
T KOG2314|consen 138 VR 139 (698)
T ss_pred ee
Confidence 64
No 177
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.00 E-value=0.0046 Score=47.44 Aligned_cols=76 Identities=24% Similarity=0.424 Sum_probs=59.9
Q ss_pred CCCCCCceEEEcCCCCCC-CHHHH---HHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 270 DDDPNNTTVFVGNLDSIV-TDEHL---RELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~-t~e~l---~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
..++...+|.|.=|..++ ..||| ...++.||.|.+|.+ -++-.|.|.|.|..+|.+|+.+++. ..-|..+.++|
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-CGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-cCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 345667888888777665 33444 455788999999976 4677999999999999999999876 66889999998
Q ss_pred cc
Q 015450 346 GR 347 (406)
Q Consensus 346 ~~ 347 (406)
-.
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 53
No 178
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.96 E-value=0.00038 Score=63.77 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=65.3
Q ss_pred CCCceEEEcCCCCCC-CHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 273 PNNTTVFVGNLDSIV-TDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~-t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
...+.|-+.-++... +.++|..+|.+||+|..|.+....-.|.|+|.+..+|-+|.. .++..|++|.|+|.|..+
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 345666677777765 678999999999999999998777789999999999988888 499999999999999886
No 179
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.92 E-value=0.0021 Score=56.35 Aligned_cols=116 Identities=17% Similarity=0.250 Sum_probs=76.9
Q ss_pred CCceEEEcCCCccccHHHH------HHHHHhhCCCcceeEEEecCCCC-CCcc--eEEEEecCHHHHHHHHHHhcCcccc
Q 015450 172 PDHTIFVGDLAADVTDYML------QETFRARYPSTKGAKVVIDRLTG-RTKG--YGFVRFGDESEQLRAMTEMNGVFCS 242 (406)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l------~~~f~~~~g~v~~~~~~~~~~~~-~~~g--~afv~f~~~~~a~~a~~~~~~~~~~ 242 (406)
..+-+||-+|+..+..+++ .++| .+||.|..+.+-+...+- ...+ -.||+|.+.++|.+||.+.+|..++
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyF-GQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYF-GQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhh-hhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3457899999988877762 4788 899999987775443111 1122 2499999999999999999999999
Q ss_pred CcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCC---CCCHHHHHHH
Q 015450 243 TRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDS---IVTDEHLREL 295 (406)
Q Consensus 243 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~---~~t~e~l~~~ 295 (406)
||.|+..+...+-...- .....-.+..++|+..--. ..+.++|...
T Consensus 192 Gr~lkatYGTTKYCtsY-------LRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~ 240 (480)
T COG5175 192 GRVLKATYGTTKYCTSY-------LRNAVCPNPDCMYLHEPGPEKDSLTKDELCNS 240 (480)
T ss_pred CceEeeecCchHHHHHH-------HcCCCCCCCCeeeecCCCcccccccHHHHhhh
Confidence 99999877664422110 1122233455666654333 2466666543
No 180
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=96.79 E-value=0.014 Score=54.20 Aligned_cols=29 Identities=10% Similarity=0.083 Sum_probs=17.7
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccce
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEV 108 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v 108 (406)
..+.+-...|+..-...+|..-.++-|.+
T Consensus 480 ql~~ve~t~~~~~dgR~~LmaqIRqG~~L 508 (569)
T KOG3671|consen 480 QLKKVETTALSSGDGRDALMAQIRQGGQL 508 (569)
T ss_pred cccceeeccCcCcccHHHHHHHHHhcccc
Confidence 34567777777666666676666644433
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.74 E-value=0.014 Score=40.59 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=41.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhc
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 332 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~ 332 (406)
....+|+ +|..+...||.++|+.||.|.--=| +...|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi--~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI--NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEE--CTTEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE--cCCcEEEEeecHHHHHHHHHHhc
Confidence 4556666 9999999999999999998854434 34589999999999999998875
No 182
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.58 E-value=0.0024 Score=57.21 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=60.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC---------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~---------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
..|.|.||..+++.+.+..+|...|.|.++.|..+ ...|||.|.|...+..|-. |.+..|=++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 37999999999999999999999999999988542 4689999999999888877 6778887887777544
Q ss_pred c
Q 015450 347 R 347 (406)
Q Consensus 347 ~ 347 (406)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 183
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.56 E-value=0.0064 Score=50.28 Aligned_cols=62 Identities=29% Similarity=0.418 Sum_probs=49.8
Q ss_pred CHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhc--CCccCCcEEEEeeccCC
Q 015450 288 TDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN--GTQLGGQNIRLSWGRSP 349 (406)
Q Consensus 288 t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~l~v~~~~~~ 349 (406)
..+.|+++|..|+.+..+...++-+-..|.|.+.++|.+|...|+ +..+.|..|+|-|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999999999999998899999999999999999999 89999999999998543
No 184
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.55 E-value=0.0043 Score=53.75 Aligned_cols=70 Identities=24% Similarity=0.285 Sum_probs=55.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEE-EEeecc
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNI-RLSWGR 347 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l-~v~~~~ 347 (406)
.=|-|.+++..- -..|..+|++||+|++....+..++.+|+|.+..+|.+||.+ +|+.|+|..+ -|+-+.
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 345566776553 345778999999999999987788999999999999999996 9999988654 555533
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.53 E-value=0.0017 Score=55.04 Aligned_cols=64 Identities=17% Similarity=0.300 Sum_probs=51.9
Q ss_pred HHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccC
Q 015450 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (406)
Q Consensus 188 ~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~ 252 (406)
++|...|+.+||+|+.++|..+ ......|-++|.|..+++|++|+..||+..+.|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 5666667569999998866443 355668999999999999999999999999999998765433
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.48 E-value=0.015 Score=38.27 Aligned_cols=55 Identities=22% Similarity=0.333 Sum_probs=43.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccC---CcEEEEEeeCCCeEEEEEeCChHHHHHHHHHh
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQY---GQLVHVKIPAGKRCGFVQFADRSCAEEALRML 331 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~---G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l 331 (406)
..+|+|.|+. +++.++|+.+|..| ....+|+-..| ..|=|.|.|.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 4579999984 58899999999998 13445555544 46789999999999999865
No 187
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.42 E-value=0.0078 Score=44.22 Aligned_cols=69 Identities=16% Similarity=0.108 Sum_probs=45.4
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEE-eeC------CCCCccceEEEEEccHHHHHHHHHHcCCCCCCC
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVI-RNK------QTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~-~~~------~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~ 150 (406)
..+.|.|-+.|.. ....|.++|++||.|.+..-. ++. ..-....+..|+|+++.+|.+||. .||..+.+
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g 80 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSG 80 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETT
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcC
Confidence 4567889899888 445688999999998777500 000 001223689999999999999997 58877754
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.98 E-value=0.036 Score=36.56 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=43.9
Q ss_pred ceeeecCCCcccCHHHHhhhhhcc---cceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHc
Q 015450 82 RTLWIGDLQYWMDETYLNTCFAHT---GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143 (406)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~---G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l 143 (406)
.+|+|+++. +++.++|+.+|..| .....|..+-|. -|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 468999994 58888899999998 124677777774 6899999999999999754
No 189
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.95 E-value=0.003 Score=55.84 Aligned_cols=75 Identities=20% Similarity=0.367 Sum_probs=60.4
Q ss_pred CceEEEcCCCCCCCHHHHH---HHhccCCcEEEEEeeCCC---------eEEEEEeCChHHHHHHHHHhcCCccCCcEEE
Q 015450 275 NTTVFVGNLDSIVTDEHLR---ELFSQYGQLVHVKIPAGK---------RCGFVQFADRSCAEEALRMLNGTQLGGQNIR 342 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~---~~F~~~G~i~~v~i~~~~---------g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 342 (406)
.+.+||-+|+..+.++.+. ++|.+||.|.+|.+.++. ..++|+|+..++|..||...+|..++|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3567888898887666553 478999999999987643 3579999999999999999999999999877
Q ss_pred EeeccCC
Q 015450 343 LSWGRSP 349 (406)
Q Consensus 343 v~~~~~~ 349 (406)
..++..+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7766543
No 190
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.81 E-value=0.0075 Score=57.11 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=60.7
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhh-cccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCC-CCcc
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFA-HTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-GEQN 154 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~-~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~-~~~~ 154 (406)
....+..|+|.||=.-+|...|+.++. .+|.|++.+| |+ -+.-|||.|.+.++|.+.+..|+|..|.. +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445678899999999999999999998 5667777743 32 23579999999999999999999998864 3444
Q ss_pred eeeeec
Q 015450 155 FRLNWA 160 (406)
Q Consensus 155 ~~~~~~ 160 (406)
+.+.+.
T Consensus 514 L~adf~ 519 (718)
T KOG2416|consen 514 LIADFV 519 (718)
T ss_pred eEeeec
Confidence 444443
No 191
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.75 E-value=0.028 Score=48.64 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhCCCcceeEEEecCCCCC-CcceEEEEecCHHHHHHHHHHhcCccccCcceEecccC
Q 015450 187 DYMLQETFRARYPSTKGAKVVIDRLTGR-TKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (406)
Q Consensus 187 ~~~l~~~f~~~~g~v~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~ 252 (406)
++++.+.. ++||.|..|.|...+..-. -.--.||+|...++|.+|+-.|||..|+||.++..+-.
T Consensus 300 ede~keEc-eKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEEC-EKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHH-HhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45677788 8999999998877653221 23457999999999999999999999999988765443
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.74 E-value=0.017 Score=47.69 Aligned_cols=71 Identities=13% Similarity=0.055 Sum_probs=45.4
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhc-ccceeEEEEEe---eCCCCC--ccceEEEEEccHHHHHHHHHHcCCCCCC
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAH-TGEVVAVKVIR---NKQTGQ--IEGYGFIEFISRAGAERVLQTFNGTPMP 149 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~-~G~v~~~~~~~---~~~~~~--~~g~a~V~f~~~~~a~~a~~~l~~~~~~ 149 (406)
.+..+|.|++||+.+|++++.+.++. ++....+.... ...+-+ .-.-|||.|.+.+++...++.++|..+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 45678999999999999999998887 66553233222 211111 1244999999999999999999997663
No 193
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.64 E-value=0.016 Score=55.85 Aligned_cols=69 Identities=19% Similarity=0.402 Sum_probs=60.3
Q ss_pred cceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
..+|||+|+-..+..+-++.++..||.|.+|+... |+|++|.+.....+|+..+....+.+....+.++
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 56899999999999999999999999998887653 9999999999999999988887777776666664
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.57 E-value=0.17 Score=38.05 Aligned_cols=65 Identities=15% Similarity=0.273 Sum_probs=50.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccC-CcEEEEEeeCC----CeEEEEEeCChHHHHHHHHHhcCCccCC
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQY-GQLVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGTQLGG 338 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~-G~i~~v~i~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~g 338 (406)
.+..+.+...+.-++.++|..+.+.+ ..|..++|.++ +=.+.|+|.+.++|.+-...+||+.|+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34555666666667777887776665 46788888776 3478999999999999999999998754
No 195
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.55 E-value=0.065 Score=37.36 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=40.5
Q ss_pred eeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCC
Q 015450 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG 145 (406)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~ 145 (406)
..+|+ .|.++...||.++|+.||.| .|..+.| .-|||...+.+.|..++..++.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 34555 99999999999999999986 3555555 3799999999999999987754
No 196
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.44 E-value=0.0087 Score=59.09 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=67.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCcc--CCcEEEEeeccCCCCCC
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQL--GGQNIRLSWGRSPSNKQ 353 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~--~g~~l~v~~~~~~~~~~ 353 (406)
.+..+.|..-..+...|..+|++||.|.++...++-..|.|+|.+.+.|..|+.+|+|+++ -|-..+|.+++.-....
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYE 378 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccccc
Confidence 3445556666778889999999999999999999999999999999999999999999984 68889999999766543
No 197
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.42 E-value=0.19 Score=37.69 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=48.0
Q ss_pred eeeecCCCcccCHHHHhhhhhcccc-eeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCC
Q 015450 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (406)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~-v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~ 149 (406)
.+.+...|..++.++|..+.+.+-. |..++|+++. ..++-.+.++|.+.++|....+.+||+.+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3444445555666677766666644 7778888874 345667999999999999999999998883
No 198
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.39 E-value=0.026 Score=44.13 Aligned_cols=53 Identities=26% Similarity=0.372 Sum_probs=42.7
Q ss_pred HHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 97 YLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 97 ~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
+|.+.|..||.+.-+++..+ .-+|+|.+-++|.+|++ ++|..+.++.+.+++.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeC
Confidence 56678899999887777654 57999999999999998 7999998777777764
No 199
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.79 E-value=0.27 Score=45.52 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=59.6
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccC
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g 243 (406)
...+..|+|-.+|..++..||..+.....-.|..+++++|..- .+=...|.|.+.++|....+.+||+.|+.
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3348899999999999999999999655567889999986432 24457899999999999999999998754
No 200
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=94.32 E-value=0.19 Score=45.69 Aligned_cols=9 Identities=22% Similarity=0.106 Sum_probs=4.8
Q ss_pred cHHHHHHHH
Q 015450 186 TDYMLQETF 194 (406)
Q Consensus 186 ~~~~l~~~f 194 (406)
|.++..+.|
T Consensus 471 tkDDaY~~F 479 (487)
T KOG4672|consen 471 TKDDAYNAF 479 (487)
T ss_pred cchHHHHHH
Confidence 555555555
No 201
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.15 E-value=0.081 Score=50.05 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=49.4
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhc--ccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHc
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAH--TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~--~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l 143 (406)
....|-|.|+.|+.++..++|+.||+. |-.+++|.+-.+. -=||+|++..+|+.|.+.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYL 232 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHH
Confidence 344666889999999999999999965 6778999887764 4699999999999998754
No 202
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.94 E-value=0.085 Score=43.57 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=50.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcc-CCcE---EEEEeeCC--------CeEEEEEeCChHHHHHHHHHhcCCccCC---
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQ-YGQL---VHVKIPAG--------KRCGFVQFADRSCAEEALRMLNGTQLGG--- 338 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~-~G~i---~~v~i~~~--------~g~afV~F~~~~~A~~A~~~l~g~~~~g--- 338 (406)
...+|.|++||.++|++++.+.++. ++.. ..+.-..+ -..|||.|.+.+++..-+..++|+.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3568999999999999999998877 6665 33331111 2479999999999999999999987632
Q ss_pred --cEEEEeeccC
Q 015450 339 --QNIRLSWGRS 348 (406)
Q Consensus 339 --~~l~v~~~~~ 348 (406)
....|++|--
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 2456777654
No 203
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.37 E-value=4 Score=35.95 Aligned_cols=163 Identities=10% Similarity=0.124 Sum_probs=100.9
Q ss_pred CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCC-------CCCCcceEEEEecCHHHHHHHHH----Hhc
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL-------TGRTKGYGFVRFGDESEQLRAMT----EMN 237 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~-------~~~~~g~afv~f~~~~~a~~a~~----~~~ 237 (406)
+..-.+.|...|+..+++-..+...| -.||.|+++.++.+.. ..+......+.|-+.+.+..... .|.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~f-v~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKF-VKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHh-hccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 35566789999999999999999999 8999999999987651 22334567888988887766543 222
Q ss_pred --CccccCcceEecccCCCCccc-------ccc----cCCccccCCCCCCCceEEEcCCCCCCCHHHH-HH---HhccCC
Q 015450 238 --GVFCSTRPMRIGPATNKKTVS-------ASY----QNSQVAQSDDDPNNTTVFVGNLDSIVTDEHL-RE---LFSQYG 300 (406)
Q Consensus 238 --~~~~~g~~i~v~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l-~~---~F~~~G 300 (406)
.+.+....+.+.+..-.-... ... ...-...-.....+|.|.|.-= ..+.++++ .+ ++..-+
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~ 168 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSN 168 (309)
T ss_pred HHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCC
Confidence 233555666665544211110 111 0000111223346778888643 44434333 22 222223
Q ss_pred ----cEEEEEeeC--------CCeEEEEEeCChHHHHHHHHHhcC
Q 015450 301 ----QLVHVKIPA--------GKRCGFVQFADRSCAEEALRMLNG 333 (406)
Q Consensus 301 ----~i~~v~i~~--------~~g~afV~F~~~~~A~~A~~~l~g 333 (406)
.|++|+|.. .+.+|.++|-+..-|...+.-|.-
T Consensus 169 n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred CceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 467787743 267999999999999988887653
No 204
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.14 E-value=0.57 Score=32.43 Aligned_cols=58 Identities=21% Similarity=0.372 Sum_probs=35.1
Q ss_pred CCCHHHHHHHhccCC-----cEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 286 IVTDEHLRELFSQYG-----QLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 286 ~~t~e~l~~~F~~~G-----~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
.++..+|..++...+ .|-+|+|..+ |+||+-.. +.|.+++..|++..+.|+.|+|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 478888888887764 4556776555 88888754 4788899999999999999999865
No 205
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=92.95 E-value=0.21 Score=44.44 Aligned_cols=18 Identities=67% Similarity=0.866 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 015450 389 YGGYPGYGNYQQPQQPQQ 406 (406)
Q Consensus 389 ~gg~~~~g~y~~~~~~~~ 406 (406)
+||.+|.|+|.||+|+||
T Consensus 375 ggG~GGGggyqqp~~~~~ 392 (465)
T KOG3973|consen 375 GGGRGGGGGYQQPQQQQQ 392 (465)
T ss_pred CCCCCCCCCCcCchhhhh
Confidence 355556677887666543
No 206
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.89 E-value=0.54 Score=31.59 Aligned_cols=55 Identities=24% Similarity=0.356 Sum_probs=41.2
Q ss_pred cccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 184 ~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
.++-++++..| ..|+ ..+|..+. .| -||.|.+.++|++|....++..+.+..+.+
T Consensus 11 ~~~v~d~K~~L-r~y~---~~~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRL-RKYR---WDRIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHH-hcCC---cceEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 56778999999 6664 24454554 33 489999999999999999988877665544
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.88 E-value=0.34 Score=44.88 Aligned_cols=64 Identities=17% Similarity=0.330 Sum_probs=56.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccC-CcEEEEEeeCC----CeEEEEEeCChHHHHHHHHHhcCCccCC
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQY-GQLVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGTQLGG 338 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~-G~i~~v~i~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~g 338 (406)
++.|+|-.+|..++--||..|+..| -.|.+++|.++ +=.+.|+|.+.++|..-...+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7889999999999999999998865 46889999886 3378999999999999999999999764
No 208
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.85 E-value=0.076 Score=47.24 Aligned_cols=71 Identities=10% Similarity=0.189 Sum_probs=54.1
Q ss_pred ceeeecCCCcccCHHHHh---hhhhcccceeEEEEEeeCC-CCCcc--ceEEEEEccHHHHHHHHHHcCCCCCCCCC
Q 015450 82 RTLWIGDLQYWMDETYLN---TCFAHTGEVVAVKVIRNKQ-TGQIE--GYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (406)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~---~~f~~~G~v~~~~~~~~~~-~~~~~--g~a~V~f~~~~~a~~a~~~l~~~~~~~~~ 152 (406)
.-+||-+|+..+.++.+. +.|.+||.|.+|.+.++.. ...+. .-+||+|+..++|..||...+|..+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 456888998887655554 6899999999999888652 11111 12899999999999999999998887654
No 209
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=0.4 Score=45.85 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=59.9
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhccC----CcEEEEEeeC-----------------------------C-------
Q 015450 272 DPNNTTVFVGNLDSI-VTDEHLRELFSQY----GQLVHVKIPA-----------------------------G------- 310 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~-~t~e~l~~~F~~~----G~i~~v~i~~-----------------------------~------- 310 (406)
...+++|-|-||.|+ +.-+||.-+|+.| |.|.+|.|-. +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999997 7889999999887 6999999811 0
Q ss_pred --------C---------eEEEEEeCChHHHHHHHHHhcCCccCCcE--EEEee
Q 015450 311 --------K---------RCGFVQFADRSCAEEALRMLNGTQLGGQN--IRLSW 345 (406)
Q Consensus 311 --------~---------g~afV~F~~~~~A~~A~~~l~g~~~~g~~--l~v~~ 345 (406)
| =||.|+|.+.+.|......++|.+|...- |.++|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 0 17999999999999999999999987554 44444
No 210
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.72 E-value=0.074 Score=52.86 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=63.4
Q ss_pred eeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeeccc
Q 015450 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASF 162 (406)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~ 162 (406)
+.++.|.+-..+-..|..+|++||.|.+.+..++- ..|.|+|.+.+.|..|++.+.|+++...+...++..++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34566677778888999999999999999988876 489999999999999999999999887777788777653
No 211
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.62 E-value=1 Score=35.00 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=52.0
Q ss_pred CCCCCceEEEcCCCccc----cHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCc
Q 015450 169 DDTPDHTIFVGDLAADV----TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~----~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~ 244 (406)
.+.+..+|.|.=|..++ +-..+...+ +.||.|.++.+. | +..|.|.|.+..+|-.|+.++.. ..-|.
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~L-s~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgt 152 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRL-SVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGT 152 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHH-HhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCc
Confidence 35667788887665554 334555666 789999998873 3 44799999999999999988765 34455
Q ss_pred ceEecc
Q 015450 245 PMRIGP 250 (406)
Q Consensus 245 ~i~v~~ 250 (406)
.+...|
T Consensus 153 m~qCsW 158 (166)
T PF15023_consen 153 MFQCSW 158 (166)
T ss_pred eEEeec
Confidence 555544
No 212
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.53 E-value=0.13 Score=36.70 Aligned_cols=68 Identities=18% Similarity=0.335 Sum_probs=45.1
Q ss_pred EEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeecccCCC-----CCCCCCCCceEEEcCCCccccHHHHHHHH
Q 015450 126 GFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAG-----EKRDDTPDHTIFVGDLAADVTDYMLQETF 194 (406)
Q Consensus 126 a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~v~~lp~~~~~~~l~~~f 194 (406)
|.|+|.++.-|++.++. ....+......+++........ ........++|.+.|||...++++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999999974 3333333333333332221111 11335567899999999999999999887
No 213
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=92.43 E-value=0.14 Score=41.25 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=58.7
Q ss_pred CceEEEcCCCCCCCH-----HHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCc-EEEEeeccC
Q 015450 275 NTTVFVGNLDSIVTD-----EHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQ-NIRLSWGRS 348 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~-----e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~-~l~v~~~~~ 348 (406)
..++++.+|...+.. .+...+|..|-+..-.++.++.++.-|.|.+.+.|..|...++...|.|+ .+++-|+..
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 455777788776422 33455677777776777788889999999999999999999999999998 888888775
Q ss_pred C
Q 015450 349 P 349 (406)
Q Consensus 349 ~ 349 (406)
.
T Consensus 90 ~ 90 (193)
T KOG4019|consen 90 G 90 (193)
T ss_pred C
Confidence 3
No 214
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.28 E-value=0.78 Score=30.81 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=43.2
Q ss_pred CCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEE
Q 015450 286 IVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 286 ~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
.++-++|+..+.+|+.. +|. .++.==||.|.|.++|+++....+|..+-+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I~--~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RIR--DDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-eEE--ecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46889999999999643 332 34444589999999999999999999887776654
No 215
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.16 E-value=0.086 Score=51.06 Aligned_cols=70 Identities=26% Similarity=0.401 Sum_probs=62.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
+...++||+|+-..++.+-++.+...+|.|.++.... |+|.+|..+..+.+|+..++-..++|..+.+.-
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4567899999999999999999999999998887654 999999999999999999999999998876654
No 216
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=92.10 E-value=0.43 Score=41.16 Aligned_cols=76 Identities=25% Similarity=0.535 Sum_probs=51.7
Q ss_pred CCceEEEcCCCCC------------CCHHHHHHHhccCCcEEEEEeeC---------C-------CeE---------EEE
Q 015450 274 NNTTVFVGNLDSI------------VTDEHLRELFSQYGQLVHVKIPA---------G-------KRC---------GFV 316 (406)
Q Consensus 274 ~~~~l~V~nlp~~------------~t~e~l~~~F~~~G~i~~v~i~~---------~-------~g~---------afV 316 (406)
...+|++.+||-. -+++.|+..|+.||.|..|+|+- + .|| |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 4567788777743 36788999999999999999842 1 222 346
Q ss_pred EeCChHHHHHHHHHhcCCcc----CCc----EEEEeeccCC
Q 015450 317 QFADRSCAEEALRMLNGTQL----GGQ----NIRLSWGRSP 349 (406)
Q Consensus 317 ~F~~~~~A~~A~~~l~g~~~----~g~----~l~v~~~~~~ 349 (406)
.|..-..-..|+.+|.|..+ +++ .++|.|.+++
T Consensus 228 qfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 66666666677777777764 333 5777776654
No 217
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=92.01 E-value=0.83 Score=45.39 Aligned_cols=10 Identities=50% Similarity=1.341 Sum_probs=4.0
Q ss_pred CCCCCCCCCC
Q 015450 10 PPPPPPMAAH 19 (406)
Q Consensus 10 ppppp~~~~~ 19 (406)
||||+++|++
T Consensus 282 ppppap~p~~ 291 (830)
T KOG1923|consen 282 PPPPAPLPHT 291 (830)
T ss_pred CCCCCCCCCc
Confidence 3334344443
No 218
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=91.94 E-value=0.91 Score=42.75 Aligned_cols=8 Identities=0% Similarity=-0.030 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 015450 134 AGAERVLQ 141 (406)
Q Consensus 134 ~~a~~a~~ 141 (406)
++..+-|+
T Consensus 496 ~~LmaqIR 503 (569)
T KOG3671|consen 496 DALMAQIR 503 (569)
T ss_pred HHHHHHHH
Confidence 33344443
No 219
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.92 E-value=1.2 Score=44.86 Aligned_cols=61 Identities=11% Similarity=0.115 Sum_probs=44.9
Q ss_pred CCCHHHHHHHhccCCcEEEEEeeC---CCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 286 IVTDEHLRELFSQYGQLVHVKIPA---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 286 ~~t~e~l~~~F~~~G~i~~v~i~~---~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
.++..+|..++..-+.|..-.|.. -..|.||+-. .+.|...+..|++..+.|+.|.|+.++
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcC-hhhHHHHHHHhccccccCCceEEEECC
Confidence 478888888887766554433321 1348888874 445788999999999999999999875
No 220
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.80 E-value=0.18 Score=35.99 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=45.7
Q ss_pred EEEEecCHHHHHHHHHHh-cCccccCcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhc
Q 015450 219 GFVRFGDESEQLRAMTEM-NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFS 297 (406)
Q Consensus 219 afv~f~~~~~a~~a~~~~-~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~ 297 (406)
|.|+|.+..-|...++.- +...+++..+.|.-..-....-. ...-......++|.|.|||...++|+|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~------k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQ------KFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCce------EEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 579999999999888632 22334555555433222111100 11122345678999999999999999998764
No 221
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=89.74 E-value=0.81 Score=40.12 Aligned_cols=80 Identities=15% Similarity=0.300 Sum_probs=62.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCC-------------eEEEEEeCChHHHHH----HHHHh
Q 015450 269 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK-------------RCGFVQFADRSCAEE----ALRML 331 (406)
Q Consensus 269 ~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~-------------g~afV~F~~~~~A~~----A~~~l 331 (406)
++....+|.|...|+..+++--.+...|.+||.|++|.+..+. ....+.|-+.+.+.. .+..|
T Consensus 9 GdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 9 GDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred CCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 3444567889999999999999999999999999999997654 688999999998764 34444
Q ss_pred cCC--ccCCcEEEEeeccC
Q 015450 332 NGT--QLGGQNIRLSWGRS 348 (406)
Q Consensus 332 ~g~--~~~g~~l~v~~~~~ 348 (406)
... .+....|.|+|..-
T Consensus 89 sEfK~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 89 SEFKTKLKSESLTLSFVSL 107 (309)
T ss_pred HHHHHhcCCcceeEEEEEE
Confidence 432 37788888888763
No 222
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.44 E-value=1.4 Score=42.34 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=64.5
Q ss_pred CCCcceeeecCCCcc-cCHHHHhhhhhcc----cceeEEEEEeeCC----------CCC---------------------
Q 015450 78 PGEIRTLWIGDLQYW-MDETYLNTCFAHT----GEVVAVKVIRNKQ----------TGQ--------------------- 121 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~----G~v~~~~~~~~~~----------~~~--------------------- 121 (406)
...+++|-|-|+.|+ +...+|.-+|+.| |.|.+|.|..... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456889999999998 7889999999887 4699999876432 111
Q ss_pred ----------------ccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeec
Q 015450 122 ----------------IEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (406)
Q Consensus 122 ----------------~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~ 160 (406)
---||.|+|.+.+.|....+.++|..+......+-+.+-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 114699999999999999999999999776655555443
No 223
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.67 E-value=1.1 Score=39.38 Aligned_cols=62 Identities=21% Similarity=0.172 Sum_probs=46.2
Q ss_pred cceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCC
Q 015450 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (406)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~ 150 (406)
...|-|-+.++.-. ..|..+|++||.|++...- ..-.+-+|.|.+..+|.+||.+ ||+.|.+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g 258 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDG 258 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeecc
Confidence 44566667766543 4577899999999876544 2336999999999999999984 7777654
No 224
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.05 E-value=0.33 Score=45.20 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=57.2
Q ss_pred CCcceeeecCCCcccC-HHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 79 GEIRTLWIGDLQYWMD-ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~-~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
.+.+.|-+.-.+..+. -.+|..+|.+||.|..|.+-... --|.|+|.+..+|-.|.. ..+..| +.+.+++
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avl--nnr~iKl 440 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVL--NNRFIKL 440 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-ccccee--cCceeEE
Confidence 3456666666777754 58899999999999999987663 369999999999977764 456566 4466777
Q ss_pred eecccC
Q 015450 158 NWASFG 163 (406)
Q Consensus 158 ~~~~~~ 163 (406)
.|.+..
T Consensus 441 ~whnps 446 (526)
T KOG2135|consen 441 FWHNPS 446 (526)
T ss_pred EEecCC
Confidence 777654
No 225
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=86.64 E-value=1.9 Score=42.99 Aligned_cols=7 Identities=43% Similarity=0.700 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 015450 290 EHLRELF 296 (406)
Q Consensus 290 e~l~~~F 296 (406)
++|++.|
T Consensus 683 kkl~~~~ 689 (830)
T KOG1923|consen 683 KKLRKDF 689 (830)
T ss_pred HHHHHHH
Confidence 3444444
No 226
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=85.56 E-value=1.6 Score=35.02 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=74.2
Q ss_pred cccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCCcccccccC
Q 015450 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQN 263 (406)
Q Consensus 184 ~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~ 263 (406)
..+-+.|.+.+...++....+.+..-. .++..+.|.+.+++.+++. .....+.+..+.+..-.+......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~---- 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSE---- 97 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccc----
Confidence 456677777775556555455554332 5788999999999999885 455566777666655543222110
Q ss_pred CccccCCCCCCCceEEEcCCCCC-CCHHHHHHHhccCCcEEEEEeeCC
Q 015450 264 SQVAQSDDDPNNTTVFVGNLDSI-VTDEHLRELFSQYGQLVHVKIPAG 310 (406)
Q Consensus 264 ~~~~~~~~~~~~~~l~V~nlp~~-~t~e~l~~~F~~~G~i~~v~i~~~ 310 (406)
........=|.|.|||.. .+++-|+.+.+.+|.+.+++....
T Consensus 98 -----~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 98 -----VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred -----cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 001112233667899998 688899999999999999987543
No 227
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.49 E-value=2.1 Score=35.51 Aligned_cols=62 Identities=16% Similarity=0.085 Sum_probs=44.1
Q ss_pred cHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhc--CccccCcceEecccCCC
Q 015450 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN--GVFCSTRPMRIGPATNK 254 (406)
Q Consensus 186 ~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~~~g~~i~v~~~~~~ 254 (406)
..+.|+++| ..++.+.....+.. -+-..|.|.+.++|.+|...|+ +..+.|..+++-++...
T Consensus 8 ~~~~l~~l~-~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELF-STYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHH-HTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHH-HhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457888999 78888777766543 4568899999999999999999 89999999999887433
No 228
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.96 E-value=1.4 Score=38.84 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=6.1
Q ss_pred CCCCCCCCCCCCC
Q 015450 389 YGGYPGYGNYQQP 401 (406)
Q Consensus 389 ~gg~~~~g~y~~~ 401 (406)
+|||...+.|+.-
T Consensus 90 GgGyN~~~~~g~n 102 (362)
T KOG3875|consen 90 GGGYNRFGPYGTN 102 (362)
T ss_pred CcccccccccccC
Confidence 4444444445543
No 229
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=82.24 E-value=3 Score=37.46 Aligned_cols=13 Identities=38% Similarity=0.623 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCCC
Q 015450 389 YGGYPGYGNYQQP 401 (406)
Q Consensus 389 ~gg~~~~g~y~~~ 401 (406)
.||.+|+|+|-+.
T Consensus 451 rgggggrg~y~~g 463 (465)
T KOG3973|consen 451 RGGGGGRGGYRGG 463 (465)
T ss_pred CCCCCCCcccCCC
Confidence 3444666777654
No 230
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=80.98 E-value=6.1 Score=34.53 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=40.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcE-EEEEeeCCCeEEEEEeCChH
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQL-VHVKIPAGKRCGFVQFADRS 322 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i-~~v~i~~~~g~afV~F~~~~ 322 (406)
....-|+|+||+.++.-.||+..+.+-+-+ .++...-..+.||+.|.+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 344669999999999999999999877643 56666667889999997654
No 231
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=79.63 E-value=1.8 Score=45.15 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=22.2
Q ss_pred cceeeecCCCcccCHHHHhhhhhcccceeEEEEEee
Q 015450 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRN 116 (406)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~ 116 (406)
.++++|--+-..+..++|+.+.+.++..-++....|
T Consensus 72 ak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~~~~D 107 (2365)
T COG5178 72 AKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVLTKVD 107 (2365)
T ss_pred hhheeeeccCCCCCHHHHHhhhCccccchhhhhhhh
Confidence 455666666666777777777777665544443333
No 232
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=78.84 E-value=8.7 Score=26.46 Aligned_cols=57 Identities=16% Similarity=0.301 Sum_probs=33.1
Q ss_pred cccCHHHHhhhhhcccc-----eeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 91 YWMDETYLNTCFAHTGE-----VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 91 ~~~~~~~l~~~f~~~G~-----v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
..++..+|..++...+. |-.+++..+ |+||+-... .|..+++.|++..+.++.+.++
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 44778888888877643 556666543 889887655 7888888899999977666554
No 233
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=78.22 E-value=12 Score=24.50 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=42.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCCh----HHHHHHHHH
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADR----SCAEEALRM 330 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~----~~A~~A~~~ 330 (406)
++.|.||.=.--...|++.+...-.|.++.+....+.+-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 466777766667788999999999999999999999999999755 455556654
No 234
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=75.95 E-value=7.7 Score=33.72 Aligned_cols=92 Identities=15% Similarity=0.299 Sum_probs=54.8
Q ss_pred eeEEEEEeeCCCCCccceEEEEEcc----HHHHHHHHHHcCCCCCCCCCc---------ce------eeeecccC-----
Q 015450 108 VVAVKVIRNKQTGQIEGYGFIEFIS----RAGAERVLQTFNGTPMPNGEQ---------NF------RLNWASFG----- 163 (406)
Q Consensus 108 v~~~~~~~~~~~~~~~g~a~V~f~~----~~~a~~a~~~l~~~~~~~~~~---------~~------~~~~~~~~----- 163 (406)
..+|+|..+ ..-||.|+- ..-..+.+..|+|..+...+. .. +.+|...-
T Consensus 67 ~dsckires-------nid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kd 139 (445)
T KOG2891|consen 67 FDSCKIRES-------NIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKD 139 (445)
T ss_pred ccceeeccc-------ccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhh
Confidence 345666554 367888864 445667777788877643321 11 22222110
Q ss_pred CCCCCCCCCCceEEEcCCCcc------------ccHHHHHHHHHhhCCCcceeEEE
Q 015450 164 AGEKRDDTPDHTIFVGDLAAD------------VTDYMLQETFRARYPSTKGAKVV 207 (406)
Q Consensus 164 ~~~~~~~~~~~~l~v~~lp~~------------~~~~~l~~~f~~~~g~v~~~~~~ 207 (406)
-.+........||++.+||-. -+++-|+..| +.||.|..+.|.
T Consensus 140 mdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~-eafg~ir~vdip 194 (445)
T KOG2891|consen 140 MDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAF-EAFGEIRNVDIP 194 (445)
T ss_pred hhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHH-HHhccceecCCc
Confidence 111122334468888888742 3567889999 899999988874
No 235
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=75.53 E-value=3 Score=43.72 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=10.6
Q ss_pred HhhhhhcccceeEEEEEee
Q 015450 98 LNTCFAHTGEVVAVKVIRN 116 (406)
Q Consensus 98 l~~~f~~~G~v~~~~~~~~ 116 (406)
|+++=+.|-.+..+++...
T Consensus 126 LeNmP~pWe~~~evkvlyh 144 (2365)
T COG5178 126 LENMPSPWEDVSEVKVLYH 144 (2365)
T ss_pred HhcCCChHhhhheeeEEee
Confidence 4444455655666666554
No 236
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=73.88 E-value=15 Score=33.97 Aligned_cols=75 Identities=21% Similarity=0.334 Sum_probs=57.0
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhccC----CcEEEEEeeC------------------------------------
Q 015450 271 DDPNNTTVFVGNLDSI-VTDEHLRELFSQY----GQLVHVKIPA------------------------------------ 309 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~-~t~e~l~~~F~~~----G~i~~v~i~~------------------------------------ 309 (406)
....++.|-|-||.|+ +...+|..+|+.| |.|..|.|-.
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCc
Confidence 3445778889999997 7888999999876 6788887710
Q ss_pred ----------------CCe-------------------EEEEEeCChHHHHHHHHHhcCCccCCc--EEEEee
Q 015450 310 ----------------GKR-------------------CGFVQFADRSCAEEALRMLNGTQLGGQ--NIRLSW 345 (406)
Q Consensus 310 ----------------~~g-------------------~afV~F~~~~~A~~A~~~l~g~~~~g~--~l~v~~ 345 (406)
++| +|.|+|.+.+.+......++|.++... .+.++|
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRf 294 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRF 294 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeee
Confidence 011 789999999999999999999987654 344444
No 237
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=73.19 E-value=8.6 Score=25.29 Aligned_cols=18 Identities=28% Similarity=0.658 Sum_probs=15.8
Q ss_pred HHHHHHhccCCcEEEEEe
Q 015450 290 EHLRELFSQYGQLVHVKI 307 (406)
Q Consensus 290 e~l~~~F~~~G~i~~v~i 307 (406)
++||++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999987766
No 238
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=71.84 E-value=16 Score=25.89 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=39.5
Q ss_pred EEcCCCCCCCHHHHHHHhcc-CC-cEEEEEee---CCCeEEEEEeCChHHHHHHHHHh
Q 015450 279 FVGNLDSIVTDEHLRELFSQ-YG-QLVHVKIP---AGKRCGFVQFADRSCAEEALRML 331 (406)
Q Consensus 279 ~V~nlp~~~t~e~l~~~F~~-~G-~i~~v~i~---~~~g~afV~F~~~~~A~~A~~~l 331 (406)
|+--+....+..+|++.++. || .|.+|... .+..-|||++..-++|......+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 34446678899999999987 55 56666653 34568999999999998876654
No 239
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.80 E-value=10 Score=34.95 Aligned_cols=54 Identities=19% Similarity=0.112 Sum_probs=44.6
Q ss_pred ceeeecCCCcccCHHHHhhhhhcccc-eeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHH
Q 015450 82 RTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142 (406)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~-v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~ 142 (406)
-.|-|.++|.....+||...|+.|+. -.+|+.+.|. .||-.|.+...|..||..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 45789999999999999999999976 4556666554 799999999999999863
No 240
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=67.53 E-value=24 Score=24.56 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=39.8
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CC-cEEEEEee---CCCeEEEEEeCChHHHHHHHHHh
Q 015450 278 VFVGNLDSIVTDEHLRELFSQ-YG-QLVHVKIP---AGKRCGFVQFADRSCAEEALRML 331 (406)
Q Consensus 278 l~V~nlp~~~t~e~l~~~F~~-~G-~i~~v~i~---~~~g~afV~F~~~~~A~~A~~~l 331 (406)
-|+-.++.+.+..+|++.++. |+ .|.+|... .+.--|||++..-+.|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 445557788999999999987 55 56666553 34468999999888888766553
No 241
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=67.00 E-value=1.2 Score=42.54 Aligned_cols=70 Identities=7% Similarity=0.062 Sum_probs=53.8
Q ss_pred cceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCC
Q 015450 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (406)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~ 150 (406)
.|+|+++|++++++-.+|..+++.+-.+..+-+.....-.+...+.+|.|.---....|+..||+..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 5779999999999999999999998777666665544444556788999987666666776777766543
No 242
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=64.07 E-value=51 Score=30.91 Aligned_cols=18 Identities=6% Similarity=-0.001 Sum_probs=8.5
Q ss_pred hcCccccCcceEecccCC
Q 015450 236 MNGVFCSTRPMRIGPATN 253 (406)
Q Consensus 236 ~~~~~~~g~~i~v~~~~~ 253 (406)
.+...+..|.|.|+++..
T Consensus 487 ndvatiLsRRiaveysds 504 (518)
T KOG1830|consen 487 NDVATILSRRIAVEYSDS 504 (518)
T ss_pred chHHHHHHHHHHHHhccC
Confidence 333444445555555444
No 243
>PHA03378 EBNA-3B; Provisional
Probab=62.10 E-value=99 Score=31.12 Aligned_cols=23 Identities=9% Similarity=-0.113 Sum_probs=11.9
Q ss_pred cceeeecCCC--cccCHHHHhhhhh
Q 015450 81 IRTLWIGDLQ--YWMDETYLNTCFA 103 (406)
Q Consensus 81 ~~~l~v~~lp--~~~~~~~l~~~f~ 103 (406)
...|...-++ ..-++.-|++++.
T Consensus 806 ~~q~~~~~~~gq~gp~k~ilrqllt 830 (991)
T PHA03378 806 SMQLMPRAAPGQQGPTKQILRQLLT 830 (991)
T ss_pred cceecCCCCccccCcHHHHHHHHhh
Confidence 3344444444 2245666777664
No 244
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=61.69 E-value=2.8 Score=40.16 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=55.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEE
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNI 341 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l 341 (406)
...++|||.|+..+++-++|..+|+.+-.+.++.+... ..++.|+|+---....|+.+||+..+....+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 34688999999999999999999999988888777543 4688999987777777777787777665544
No 245
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=60.28 E-value=13 Score=28.35 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=27.9
Q ss_pred CHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccH-HHHHHHHH
Q 015450 94 DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISR-AGAERVLQ 141 (406)
Q Consensus 94 ~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~-~~a~~a~~ 141 (406)
+.++|++.|+.|..+ +++.+.+.. -+.|++.|+|.+- ..-..|++
T Consensus 30 ~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 557899999999876 466666653 6779999999854 34455554
No 246
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=59.77 E-value=19 Score=31.65 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=35.7
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccce-eEEEEEeeCCCCCccceEEEEEccHHH
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEV-VAVKVIRNKQTGQIEGYGFIEFISRAG 135 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v-~~~~~~~~~~~~~~~g~a~V~f~~~~~ 135 (406)
...-|+|+||+.++.-.||+..+.+.+-+ .++... -+.|-||+.|.+...
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKG 379 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccC
Confidence 34459999999999999999999887542 222221 234789999987543
No 247
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.44 E-value=14 Score=34.15 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=44.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCc-EEEEEeeCCCeEEEEEeCChHHHHHHHHH
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQ-LVHVKIPAGKRCGFVQFADRSCAEEALRM 330 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~-i~~v~i~~~~g~afV~F~~~~~A~~A~~~ 330 (406)
-..+|-|.++|.....+||...|+.|+. =.+|... +...||-.|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv-DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV-DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEe-ecceeEEeecchHHHHHHhhc
Confidence 5678999999999999999999999863 2344443 345789999999999999884
No 248
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=55.96 E-value=39 Score=23.49 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=32.8
Q ss_pred HHHHHHhccCCcEEEEEeeCC--CeEEEEEeCChHHHHHHHHHhc
Q 015450 290 EHLRELFSQYGQLVHVKIPAG--KRCGFVQFADRSCAEEALRMLN 332 (406)
Q Consensus 290 e~l~~~F~~~G~i~~v~i~~~--~g~afV~F~~~~~A~~A~~~l~ 332 (406)
++|++.++.+| +..+.+.-. .++.|+-+.+.+.+.++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56788888899 666666655 6788888889999888888763
No 249
>PHA03378 EBNA-3B; Provisional
Probab=55.81 E-value=90 Score=31.38 Aligned_cols=7 Identities=29% Similarity=0.387 Sum_probs=2.8
Q ss_pred eEEEcCC
Q 015450 277 TVFVGNL 283 (406)
Q Consensus 277 ~l~V~nl 283 (406)
+|+..||
T Consensus 945 ~vi~en~ 951 (991)
T PHA03378 945 SVIWENV 951 (991)
T ss_pred eeehhhh
Confidence 3334444
No 250
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=55.40 E-value=76 Score=29.57 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=31.7
Q ss_pred CCCCcceeeecCCCcc-cCHHHHhhhhhcc----cceeEEEEEeeC
Q 015450 77 QPGEIRTLWIGDLQYW-MDETYLNTCFAHT----GEVVAVKVIRNK 117 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~----G~v~~~~~~~~~ 117 (406)
....+.+|-|-|+.|+ +...+|...|+.| |.|..|.|....
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse 187 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE 187 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh
Confidence 3566788999999987 7788999888886 457778776653
No 251
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=55.14 E-value=47 Score=22.55 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=37.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCCh
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADR 321 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~ 321 (406)
.+|.|.++.=.--...+++..+.-..|.++.+...++.+.|+|++.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~ 49 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSN 49 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCC
Confidence 3566777665556678888898888899999998988999999883
No 252
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=52.73 E-value=24 Score=28.02 Aligned_cols=106 Identities=12% Similarity=-0.006 Sum_probs=56.7
Q ss_pred ccCHHHHhhhhhc-ccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeecccCCCCCCCC
Q 015450 92 WMDETYLNTCFAH-TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDD 170 (406)
Q Consensus 92 ~~~~~~l~~~f~~-~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (406)
..+-..|...+.+ ++....+.+..-.. ++..+.|.+.+++.++++. ....+.+ ..+.+..=+.........
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~~-----~~fl~~F~~~~d~~~vl~~-~p~~~~~--~~~~l~~W~~~~~~~~~~ 99 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLGD-----NLFLFQFESEEDRQRVLKG-GPWNFNG--HFLILQRWSPDFNPSEVK 99 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeCC-----CeEEEEEEeccceeEEEec-ccccccc--cchhhhhhcccccccccc
Confidence 3556666666544 34333444443222 6899999999999999762 2222222 222222111111111111
Q ss_pred --CCCceEEEcCCCccc-cHHHHHHHHHhhCCCcceeEE
Q 015450 171 --TPDHTIFVGDLAADV-TDYMLQETFRARYPSTKGAKV 206 (406)
Q Consensus 171 --~~~~~l~v~~lp~~~-~~~~l~~~f~~~~g~v~~~~~ 206 (406)
...--|-|-|||... +++.++.+. +.+|.+..+..
T Consensus 100 ~~~~~vWVri~glP~~~~~~~~~~~i~-~~iG~~i~vD~ 137 (153)
T PF14111_consen 100 FEHIPVWVRIYGLPLHLWSEEILKAIG-SKIGEPIEVDE 137 (153)
T ss_pred eeccchhhhhccCCHHHhhhHHHHHHH-HhcCCeEEEEc
Confidence 122335567999875 555556665 88998777654
No 253
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=52.24 E-value=51 Score=24.25 Aligned_cols=48 Identities=25% Similarity=0.328 Sum_probs=28.6
Q ss_pred ccccHHHHHHHHHhhCCCcceeEEEecCCC----CCCcceEEEEecCHHHHHH
Q 015450 183 ADVTDYMLQETFRARYPSTKGAKVVIDRLT----GRTKGYGFVRFGDESEQLR 231 (406)
Q Consensus 183 ~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~----~~~~g~afv~f~~~~~a~~ 231 (406)
.+.+..+|++.+++.++.-.+..++..-.| +++.|||.| |++.+.+.+
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 366788999888788885545554443322 355565555 455554433
No 254
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=52.21 E-value=38 Score=22.55 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=24.3
Q ss_pred HHHHHHhcc--CCcEEEEEeeCCCeEE-EEEeCCh
Q 015450 290 EHLRELFSQ--YGQLVHVKIPAGKRCG-FVQFADR 321 (406)
Q Consensus 290 e~l~~~F~~--~G~i~~v~i~~~~g~a-fV~F~~~ 321 (406)
++|.+.... .|.|...++..+++.+ +|+|+|-
T Consensus 18 ~~l~~~l~~~~~g~I~~fKmtDG~giG~vv~~~ng 52 (64)
T PF11061_consen 18 KELVDKLGKNPIGTIKGFKMTDGSGIGVVVEFSNG 52 (64)
T ss_pred HHHHHHhccCCcEEEEEEEEecCCcEEEEEEecCC
Confidence 345556665 8999999999999976 5788764
No 255
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=51.52 E-value=22 Score=27.03 Aligned_cols=43 Identities=16% Similarity=0.290 Sum_probs=22.6
Q ss_pred CCHHHHHHHhccCCcEEEEEeeCC---CeEEEEEeCChHH-HHHHHH
Q 015450 287 VTDEHLRELFSQYGQLVHVKIPAG---KRCGFVQFADRSC-AEEALR 329 (406)
Q Consensus 287 ~t~e~l~~~F~~~G~i~~v~i~~~---~g~afV~F~~~~~-A~~A~~ 329 (406)
++.++|++.|+.|..++-.-+-.. .++++|+|.+.-. -..|++
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 356889999999977643333211 5799999975443 334444
No 256
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=50.78 E-value=45 Score=25.12 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=30.7
Q ss_pred ccccHHHHHHHHHhhCCCcceeEEEec----CCCCCCcceEEEEecCHHHHH
Q 015450 183 ADVTDYMLQETFRARYPSTKGAKVVID----RLTGRTKGYGFVRFGDESEQL 230 (406)
Q Consensus 183 ~~~~~~~l~~~f~~~~g~v~~~~~~~~----~~~~~~~g~afv~f~~~~~a~ 230 (406)
.+++.+||++-+++.|-.-.++.++.+ -..|++.|||.| |++.+.|.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 467889999988777765555444332 235678888887 55555444
No 257
>PRK15313 autotransport protein MisL; Provisional
Probab=49.76 E-value=34 Score=35.80 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=5.3
Q ss_pred eeeecCCCcccCH
Q 015450 83 TLWIGDLQYWMDE 95 (406)
Q Consensus 83 ~l~v~~lp~~~~~ 95 (406)
+||+..|...+-|
T Consensus 651 ~LF~~tLhDR~GE 663 (955)
T PRK15313 651 TLFMTRLHDRLGE 663 (955)
T ss_pred HHhhccHHHhCCC
Confidence 3444444443333
No 258
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=46.02 E-value=91 Score=22.14 Aligned_cols=58 Identities=7% Similarity=0.125 Sum_probs=40.4
Q ss_pred EEEcCCCccccHHHHHHHHHhhCC-CcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHh
Q 015450 176 IFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (406)
Q Consensus 176 l~v~~lp~~~~~~~l~~~f~~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 236 (406)
-|.-.++.+++..+|++.++..|+ .|.+++.+... . ..--|||.+...++|.+....+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHhh
Confidence 344456788999999999977776 35555555443 1 2335999999988888876543
No 259
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=45.99 E-value=24 Score=32.34 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=26.8
Q ss_pred EEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCC
Q 015450 314 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351 (406)
Q Consensus 314 afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 351 (406)
|||+|++.++|..|++.+.... .+.++++.|-.+.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999999765544 35557777665544
No 260
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=44.53 E-value=90 Score=20.52 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=30.4
Q ss_pred CHHHHHHHhccCC-cEEEEEeeCC--CeEEEEEeCChHHHHHHHHHhcCCc
Q 015450 288 TDEHLRELFSQYG-QLVHVKIPAG--KRCGFVQFADRSCAEEALRMLNGTQ 335 (406)
Q Consensus 288 t~e~l~~~F~~~G-~i~~v~i~~~--~g~afV~F~~~~~A~~A~~~l~g~~ 335 (406)
.-.+|.++|.+.| .|.++..... ++..-+.+++.+.|.++++. +|.+
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH-CCCE
Confidence 4567888888876 6777776433 44445556676677777775 4443
No 261
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=43.52 E-value=63 Score=23.32 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=36.5
Q ss_pred cCCCCCCCHHHHHHHhccCCc-EEEEEeeCC--CeEEEEEeCChHHHHHHHHHhc
Q 015450 281 GNLDSIVTDEHLRELFSQYGQ-LVHVKIPAG--KRCGFVQFADRSCAEEALRMLN 332 (406)
Q Consensus 281 ~nlp~~~t~e~l~~~F~~~G~-i~~v~i~~~--~g~afV~F~~~~~A~~A~~~l~ 332 (406)
..+-..++...|..-|-.-|. -+-..+.+| +..|.|+|.+.+.+..|...|-
T Consensus 18 YS~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 18 YSQTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred EecCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 345566777777766655552 233444555 7899999999999999988764
No 262
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=43.37 E-value=34 Score=23.36 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=22.0
Q ss_pred eEEEEEeCChHHHHHHHHHhcCCccCC
Q 015450 312 RCGFVQFADRSCAEEALRMLNGTQLGG 338 (406)
Q Consensus 312 g~afV~F~~~~~A~~A~~~l~g~~~~g 338 (406)
...+|+|.+..+|.+|-+.|....+..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 367999999999999999887665543
No 263
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=42.85 E-value=1.1e+02 Score=21.23 Aligned_cols=58 Identities=7% Similarity=0.105 Sum_probs=40.1
Q ss_pred EEEcCCCccccHHHHHHHHHhhCC-CcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHh
Q 015450 176 IFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (406)
Q Consensus 176 l~v~~lp~~~~~~~l~~~f~~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 236 (406)
-|+-.++.+++..+|++.++..|+ .|..++.+.-+ . ..--|||.+...+.|.+....+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHHhh
Confidence 455567789999999999977776 35555554443 1 2335999998888887766543
No 264
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=42.71 E-value=48 Score=23.47 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=24.9
Q ss_pred cEEEEEeeCC-CeEEEEEeCChHHHHHHHHHhcCCc
Q 015450 301 QLVHVKIPAG-KRCGFVQFADRSCAEEALRMLNGTQ 335 (406)
Q Consensus 301 ~i~~v~i~~~-~g~afV~F~~~~~A~~A~~~l~g~~ 335 (406)
.|.++....+ +|+-|||=.+.+++.+|+..+.+..
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 5666666554 9999999999999999999776543
No 265
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=42.19 E-value=50 Score=30.24 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=36.6
Q ss_pred EEEEecCHHHHHHHHHHhcCccccCcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhcc
Q 015450 219 GFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQ 298 (406)
Q Consensus 219 afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~ 298 (406)
|||+|++..+|..|++.+.... .+.+++..+.+..+ |.=.||..+..+..+|..+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D---------------------I~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD---------------------IIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc---------------------ccccccCCChHHHHHHHHHHH
Confidence 6999999999999998544333 23445555544333 555677666666666665543
No 266
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=42.12 E-value=87 Score=19.65 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=28.1
Q ss_pred HHHHHHHhccCC-cEEEEEeeC---CCeEEEEEeCChHHHHHHH
Q 015450 289 DEHLRELFSQYG-QLVHVKIPA---GKRCGFVQFADRSCAEEAL 328 (406)
Q Consensus 289 ~e~l~~~F~~~G-~i~~v~i~~---~~g~afV~F~~~~~A~~A~ 328 (406)
-.+|.+.|.+.| .|.++.+.. ++....+++++.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 356677777776 677777644 3566778888888887765
No 267
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=41.12 E-value=1.7e+02 Score=22.70 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=42.3
Q ss_pred CCHHHHHHHhccCC-cEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 287 VTDEHLRELFSQYG-QLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 287 ~t~e~l~~~F~~~G-~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
.+-+.+.+.++.-| .++++....+ ...|+|++.++-.+|...|....=++..|.+..+.
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~--~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPEND--SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCC--EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 46678888888877 4566665444 88999999999988888876555445556555544
No 268
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=40.67 E-value=11 Score=30.75 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=45.3
Q ss_pred ceeeecCCCcccC-----HHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCC
Q 015450 82 RTLWIGDLQYWMD-----ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151 (406)
Q Consensus 82 ~~l~v~~lp~~~~-----~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~ 151 (406)
.++.+.+|...+- ......+|.+|.+..-.++++.. +..-|.|.+++.|..|...+++..+.+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 3467777776643 22334667777665555555443 5778999999999999999999888775
No 269
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=39.04 E-value=92 Score=24.24 Aligned_cols=47 Identities=17% Similarity=0.383 Sum_probs=27.1
Q ss_pred ccccHHHHHHHHHhhCC-CcceeEEEecCC----CCCCcceEEEEecCHHHHH
Q 015450 183 ADVTDYMLQETFRARYP-STKGAKVVIDRL----TGRTKGYGFVRFGDESEQL 230 (406)
Q Consensus 183 ~~~~~~~l~~~f~~~~g-~v~~~~~~~~~~----~~~~~g~afv~f~~~~~a~ 230 (406)
...+..+|++.++..|+ .-.+..++..-. .+++.|||.| |++.+.+.
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 36788899999978887 334443333222 3455666665 44544433
No 270
>COG4907 Predicted membrane protein [Function unknown]
Probab=39.04 E-value=41 Score=31.90 Aligned_cols=43 Identities=16% Similarity=0.266 Sum_probs=21.3
Q ss_pred HHHHHHHhccCCcE-----EEEEeeCCCeEEEEEeC----ChHHHHHHHHHhcCCc
Q 015450 289 DEHLRELFSQYGQL-----VHVKIPAGKRCGFVQFA----DRSCAEEALRMLNGTQ 335 (406)
Q Consensus 289 ~e~l~~~F~~~G~i-----~~v~i~~~~g~afV~F~----~~~~A~~A~~~l~g~~ 335 (406)
|+..+++++.|-.+ ++|.+=.+ ++.|. -.+.+.+|++.+...+
T Consensus 488 W~aFKnfLsd~s~lke~~pesI~~W~~----ylVYatALGV~dkVvkam~~~~~~e 539 (595)
T COG4907 488 WQAFKNFLSDYSQLKEAKPESIHLWEQ----YLVYATALGVSDKVVKAMRKALDME 539 (595)
T ss_pred HHHHHHHHHhHHHHhhCCCcceehHhh----hhhhhhhhccHHHHHHHHHHhCcHh
Confidence 45666676666433 44444222 12222 2355666776665554
No 271
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=38.31 E-value=29 Score=32.01 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=48.3
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEe-eCCC--CCccceEEEEEccHHHHHHHHHHcCCCCC
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR-NKQT--GQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~-~~~~--~~~~g~a~V~f~~~~~a~~a~~~l~~~~~ 148 (406)
..+.|.|.+||...++++|.+....+-.-+.+.... ...+ ..-.+.|||.|...++.....+.++|..+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 456789999999999999988877764432222222 1111 12246799999999998888888888655
No 272
>PRK15313 autotransport protein MisL; Provisional
Probab=37.66 E-value=63 Score=33.94 Aligned_cols=9 Identities=0% Similarity=-0.045 Sum_probs=4.3
Q ss_pred cceeeecCC
Q 015450 81 IRTLWIGDL 89 (406)
Q Consensus 81 ~~~l~v~~l 89 (406)
.--.|+.|+
T Consensus 638 EvgsY~ANl 646 (955)
T PRK15313 638 EVGSYLANN 646 (955)
T ss_pred chHHHHHHH
Confidence 334455554
No 273
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=36.62 E-value=1.6e+02 Score=21.16 Aligned_cols=44 Identities=23% Similarity=0.242 Sum_probs=32.8
Q ss_pred HHHHHHHhccCC-cEEEEEeeCCC--eEEEEEeCChHHHHHHHHHhc
Q 015450 289 DEHLRELFSQYG-QLVHVKIPAGK--RCGFVQFADRSCAEEALRMLN 332 (406)
Q Consensus 289 ~e~l~~~F~~~G-~i~~v~i~~~~--g~afV~F~~~~~A~~A~~~l~ 332 (406)
.+.++++++.+| +++++.+..+. -...+++.|.+.|.++...+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 466788888875 78888887663 467888889998887765543
No 274
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=35.08 E-value=1.5e+02 Score=22.18 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=29.5
Q ss_pred ccccHHHHHHHHHhhCCCcceeEEEecCCC----CCCcceEEEEecCHHHH
Q 015450 183 ADVTDYMLQETFRARYPSTKGAKVVIDRLT----GRTKGYGFVRFGDESEQ 229 (406)
Q Consensus 183 ~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~----~~~~g~afv~f~~~~~a 229 (406)
.+.+..+|++.+...++.-.+..++..-.| ++++||+-| |.|.+.+
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~ 79 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERA 79 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHH
Confidence 456788999998788887666666554332 456666665 4454443
No 275
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=34.95 E-value=19 Score=29.37 Aligned_cols=65 Identities=18% Similarity=0.087 Sum_probs=39.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
.++++.. +-+...++|.++-+ |.+..|...+. +|..||+|.+.+.|...+.. +.....-..|...
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~ 182 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRS 182 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHH
Confidence 3455555 22223344544444 68888877432 67899999999999987775 4444444444333
No 276
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=34.04 E-value=1.6e+02 Score=30.73 Aligned_cols=13 Identities=8% Similarity=0.204 Sum_probs=8.2
Q ss_pred ChHHHHHHHHHhc
Q 015450 320 DRSCAEEALRMLN 332 (406)
Q Consensus 320 ~~~~A~~A~~~l~ 332 (406)
...++.++++.+.
T Consensus 692 ~~~~~~~~~~~l~ 704 (754)
T TIGR01005 692 VVECGRADAQGIS 704 (754)
T ss_pred eHHHHHHHHHHHH
Confidence 5556666776665
No 277
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=33.40 E-value=45 Score=31.86 Aligned_cols=9 Identities=22% Similarity=0.582 Sum_probs=5.7
Q ss_pred EEEEEccHH
Q 015450 126 GFIEFISRA 134 (406)
Q Consensus 126 a~V~f~~~~ 134 (406)
++|-|.+-.
T Consensus 126 GlIAY~~~~ 134 (465)
T PF01690_consen 126 GLIAYDNSS 134 (465)
T ss_pred eeEEecCcc
Confidence 566666655
No 278
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=33.15 E-value=50 Score=31.72 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=15.4
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhc
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAH 104 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~ 104 (406)
....++|-+-=+-.++...|..+|+.
T Consensus 304 r~~~t~W~s~D~~~~D~~r~~~LFEs 329 (817)
T KOG1925|consen 304 RPCATLWASLDPVSVDTARLEHLFES 329 (817)
T ss_pred cccchhhhccCcceecHHHHHHHHHH
Confidence 33444554333444777888888865
No 279
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.76 E-value=1.3e+02 Score=23.66 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=38.1
Q ss_pred CCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhc
Q 015450 282 NLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 332 (406)
Q Consensus 282 nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~ 332 (406)
.|+..+.+|.|.++.+-+|.|.... ..| -.+-|.|.+...+|++.+.
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---EEEEeccHHHHHHHHHHHH
Confidence 4788889999999999999887765 222 4567899999999998763
No 280
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=32.53 E-value=64 Score=26.43 Aligned_cols=58 Identities=21% Similarity=0.090 Sum_probs=36.2
Q ss_pred cceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCC-CCCccceEEEEEccHHHHHHHHHH
Q 015450 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ-TGQIEGYGFIEFISRAGAERVLQT 142 (406)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~-~~~~~g~a~V~f~~~~~a~~a~~~ 142 (406)
.+++|.. +.+...++|.++-+ |.+..|...+... ...-+|-.||.|.+.+.|.++++.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3455554 22222333444444 5777777665432 125578899999999999998875
No 281
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=31.99 E-value=29 Score=32.61 Aligned_cols=9 Identities=22% Similarity=0.427 Sum_probs=4.2
Q ss_pred EEEeCChHH
Q 015450 315 FVQFADRSC 323 (406)
Q Consensus 315 fV~F~~~~~ 323 (406)
|+||.=+|.
T Consensus 454 y~EfpvPEQ 462 (480)
T KOG2675|consen 454 YVEFPVPEQ 462 (480)
T ss_pred cccccChHH
Confidence 455544443
No 282
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=31.47 E-value=37 Score=29.11 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=29.5
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEE
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAV 111 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~ 111 (406)
...+..+||+-|+|...|++.|..+.+.+|.+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34567899999999999999999999999865433
No 283
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=31.20 E-value=83 Score=22.32 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=25.7
Q ss_pred ccccHHHHHHHHHhhCCCcceeEEEecC--CC--CCCcceEEEEecCHHHHHH
Q 015450 183 ADVTDYMLQETFRARYPSTKGAKVVIDR--LT--GRTKGYGFVRFGDESEQLR 231 (406)
Q Consensus 183 ~~~~~~~l~~~f~~~~g~v~~~~~~~~~--~~--~~~~g~afv~f~~~~~a~~ 231 (406)
...+..+|++.++..++.-.+..++..- .. +.+.|||.| |++.+.+.+
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 4567789998887777764444443322 23 344555555 555554443
No 284
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=30.64 E-value=3.9e+02 Score=23.82 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=29.1
Q ss_pred EcCCCCCCCHHHHHHHhc-cCCcEEEEEeeC-CCeEEEEEeC-ChHHHHHHHHHhc
Q 015450 280 VGNLDSIVTDEHLRELFS-QYGQLVHVKIPA-GKRCGFVQFA-DRSCAEEALRMLN 332 (406)
Q Consensus 280 V~nlp~~~t~e~l~~~F~-~~G~i~~v~i~~-~~g~afV~F~-~~~~A~~A~~~l~ 332 (406)
+.|+.+.+.+|.|-+-|- .+| ..+|.+ ++..-.|+|. ....+.+|.+.|.
T Consensus 207 LYg~~f~i~~E~ls~~fv~p~g---kAkier~G~~iTivt~Sr~v~~~leAA~~L~ 259 (359)
T KOG0524|consen 207 LYGLSFEIPEEALSKDFVLPLG---KAKIEREGTHITIVTYSRMVGHCLEAAETLV 259 (359)
T ss_pred hcCCCccCChhhcCcceeeecc---ceeeeecCCceEEEEechhHHHHHHHHHHHH
Confidence 456788888888766553 343 344433 4567788886 3344444444443
No 285
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=30.52 E-value=25 Score=32.60 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=50.2
Q ss_pred CcceeeecCCCcccCHH--------HHhhhhhc--ccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHH
Q 015450 80 EIRTLWIGDLQYWMDET--------YLNTCFAH--TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~--------~l~~~f~~--~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~ 141 (406)
..+.+|+.+...+...+ ++..+|.. .+.+..+...++.....++|..|++|.....++++..
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34667888877665555 88899988 6778888888887677888999999999999999863
No 286
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=30.44 E-value=1.5e+02 Score=26.70 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=4.7
Q ss_pred eeEEEEEee
Q 015450 108 VVAVKVIRN 116 (406)
Q Consensus 108 v~~~~~~~~ 116 (406)
|.+|+|...
T Consensus 210 ISEVRVrPe 218 (407)
T PF04625_consen 210 ISEVRVRPE 218 (407)
T ss_pred chheeecCC
Confidence 555555443
No 287
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=30.39 E-value=36 Score=19.67 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=10.0
Q ss_pred CCCCHHHHHHHhccCC
Q 015450 285 SIVTDEHLRELFSQYG 300 (406)
Q Consensus 285 ~~~t~e~l~~~F~~~G 300 (406)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678999999998653
No 288
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=30.00 E-value=78 Score=22.44 Aligned_cols=27 Identities=15% Similarity=0.380 Sum_probs=22.5
Q ss_pred ceeEEEEEeeCCCCCccceEEEEEccH
Q 015450 107 EVVAVKVIRNKQTGQIEGYGFIEFISR 133 (406)
Q Consensus 107 ~v~~~~~~~~~~~~~~~g~a~V~f~~~ 133 (406)
.|.+|++.+....|+.+.|+-|+|.+.
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~e 28 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDNE 28 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecce
Confidence 478899988877899999999998763
No 289
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=29.10 E-value=2e+02 Score=28.31 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=33.1
Q ss_pred HHHHHHhc----cCCcEEEEEee-----CCCeEEEEEeCChHHHHHHHHHhcC
Q 015450 290 EHLRELFS----QYGQLVHVKIP-----AGKRCGFVQFADRSCAEEALRMLNG 333 (406)
Q Consensus 290 e~l~~~F~----~~G~i~~v~i~-----~~~g~afV~F~~~~~A~~A~~~l~g 333 (406)
-+|..+|. .+|.|+++.+. ..+...++.|.+.++|.+|+..+..
T Consensus 204 ~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 204 FDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred cchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHh
Confidence 45666665 57899988873 2356778999999999999887643
No 290
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=28.54 E-value=1.9e+02 Score=19.64 Aligned_cols=46 Identities=24% Similarity=0.403 Sum_probs=29.8
Q ss_pred CHHHHHHHhccCC-cEEEEEeeCCCe-----EEEEEeC-ChHHHHHHHHHhcC
Q 015450 288 TDEHLRELFSQYG-QLVHVKIPAGKR-----CGFVQFA-DRSCAEEALRMLNG 333 (406)
Q Consensus 288 t~e~l~~~F~~~G-~i~~v~i~~~~g-----~afV~F~-~~~~A~~A~~~l~g 333 (406)
+--++.+.|+.+| .+.+|+-...++ .-||+|+ +.++..+|+..|..
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 4567888888887 667776543321 4467777 45556677777754
No 291
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=28.45 E-value=47 Score=28.51 Aligned_cols=35 Identities=26% Similarity=0.464 Sum_probs=29.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEe
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 307 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i 307 (406)
....+||+-|+|..++++-|..+.+..|.+..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 34678999999999999999999999987665554
No 292
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=28.32 E-value=1e+02 Score=22.32 Aligned_cols=39 Identities=10% Similarity=0.207 Sum_probs=24.0
Q ss_pred HHHHHhccCCc--------EEEEEeeCC-CeEEEEEeCChHHHHHHHH
Q 015450 291 HLRELFSQYGQ--------LVHVKIPAG-KRCGFVQFADRSCAEEALR 329 (406)
Q Consensus 291 ~l~~~F~~~G~--------i~~v~i~~~-~g~afV~F~~~~~A~~A~~ 329 (406)
.+...|++||. ++.++=.-. .....|+|.|.+.|..+..
T Consensus 24 ~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 24 KAKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred HhHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHhc
Confidence 45566777753 332222111 4578999999998886543
No 293
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=28.12 E-value=1.8e+02 Score=21.85 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=27.5
Q ss_pred CCccccHHHHHHHHHhh--CCCcceeEEEecCCCCCCcceEEEEecCH
Q 015450 181 LAADVTDYMLQETFRAR--YPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226 (406)
Q Consensus 181 lp~~~~~~~l~~~f~~~--~g~v~~~~~~~~~~~~~~~g~afv~f~~~ 226 (406)
-|..+|..+++++|++. |-.|..-.+.+|-.-.-+-..||..|...
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 46789999999999653 33344333444432223334678877654
No 294
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=27.89 E-value=56 Score=23.09 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=20.8
Q ss_pred ceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeecccCCCCCCCCCCCceEEEcCC
Q 015450 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDL 181 (406)
Q Consensus 124 g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l 181 (406)
.||.|+|.-.+.. .++. ..|.+|-. ....+.|||.+.
T Consensus 9 ~y~VV~~~~~~~~-~~l~-~gGyEIVD-------------------K~~~rEifi~G~ 45 (85)
T PF12091_consen 9 NYCVVEFPPDAGH-PALA-RGGYEIVD-------------------KNARREIFIDGS 45 (85)
T ss_pred ceEEEEecCCCCc-cchh-cCCcEEee-------------------cCCCceEEeCcH
Confidence 6999999432222 2332 34555421 334568999884
No 295
>PF14893 PNMA: PNMA
Probab=27.87 E-value=64 Score=29.69 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=30.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhc----cCCcEE---EEEeeC-CCeEEEEEeCChH
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFS----QYGQLV---HVKIPA-GKRCGFVQFADRS 322 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~----~~G~i~---~v~i~~-~~g~afV~F~~~~ 322 (406)
..+.|.|.+||.++++++|.+.+. ..|... ++.... +...|+|+|...-
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~ 73 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDV 73 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccccc
Confidence 356799999999999999888764 334321 111111 1346788886443
No 296
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=27.82 E-value=1e+02 Score=21.87 Aligned_cols=26 Identities=12% Similarity=0.433 Sum_probs=21.2
Q ss_pred ceeEEEEEeeCCCCCccceEEEEEcc
Q 015450 107 EVVAVKVIRNKQTGQIEGYGFIEFIS 132 (406)
Q Consensus 107 ~v~~~~~~~~~~~~~~~g~a~V~f~~ 132 (406)
.|.+|++..-...++.+++|-|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36788888876669999999999976
No 297
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=27.34 E-value=3.1e+02 Score=21.57 Aligned_cols=53 Identities=13% Similarity=0.338 Sum_probs=36.4
Q ss_pred cceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCC
Q 015450 216 KGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLD 284 (406)
Q Consensus 216 ~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp 284 (406)
..+-+..+.+.. ...++..+.++.+.++.+.|..-..... ...+..|||+.-.
T Consensus 26 ~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~~~~~---------------~~~C~ilyi~~~~ 78 (145)
T PF13689_consen 26 SPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLSSPNE---------------ISGCHILYISSSE 78 (145)
T ss_pred CCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECCCCcc---------------cccccEEEECCCC
Confidence 445666666655 4456778888999999999976542211 2358889998754
No 298
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.03 E-value=1.9e+02 Score=23.52 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=41.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhc
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 332 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~ 332 (406)
..++.| +|+..+.+|.|.++.+-+|.|... .+ ..-.+-|.+.+...+|++.+.
T Consensus 112 ~~~iRv-~l~~~i~~erl~ei~E~~gvI~Ef---ee-~~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 112 FETIRV-KLKKPIQEERLQEISEWHGVIFEF---EE-DDKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred ceeEEE-ecCccchHHHHHHHHHHhceeEEe---cC-CcEEEEeccHHHHHHHHHHHH
Confidence 344555 689999999999999999998776 22 234788999999999998763
No 299
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=26.62 E-value=1.2e+02 Score=22.15 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=21.2
Q ss_pred ceeEEEEEeeCCCCCccceEEEEEcc
Q 015450 107 EVVAVKVIRNKQTGQIEGYGFIEFIS 132 (406)
Q Consensus 107 ~v~~~~~~~~~~~~~~~g~a~V~f~~ 132 (406)
.|.+|++.+-...|+-+++|-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 46788887766668999999999987
No 300
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=26.26 E-value=1.8e+02 Score=25.72 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=44.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEE----EEe--CChHHHHHHHHHhcC
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGF----VQF--ADRSCAEEALRMLNG 333 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~af----V~F--~~~~~A~~A~~~l~g 333 (406)
.-+++|.+.+++++.-.+.|+++...+..+.-....++....+ |+. .+.+.|.+++..+.+
T Consensus 178 ~~~~~~~~~gi~ES~la~~L~~i~~~~~~~~i~s~p~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 244 (255)
T COG1058 178 YYSRVLRVFGIGESSLAPTLKDLQDEQPNVTIASYPKDGEVRLRELVIRAEARDEEEADALLRWLEG 244 (255)
T ss_pred eEEEEEEEcCCChHHHHHHHHHHHhcCCCCEEEecCCCCceeccceEEEEecCCHHHHHHHHHHHHH
Confidence 4567899999999988899999998886555555555543333 666 788888888887654
No 301
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.09 E-value=3.6e+02 Score=28.38 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=10.2
Q ss_pred EEEEEeCChHHHHHHHHHh
Q 015450 313 CGFVQFADRSCAEEALRML 331 (406)
Q Consensus 313 ~afV~F~~~~~A~~A~~~l 331 (406)
|.|--|....|+.+.+..|
T Consensus 632 y~Y~~F~a~~D~~rl~nDL 650 (1007)
T KOG1984|consen 632 YKYYPFQALTDGPRLLNDL 650 (1007)
T ss_pred EEecchhhcccHHHHHHHH
Confidence 4455555555555555554
No 302
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=25.90 E-value=1.1e+02 Score=24.48 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=37.4
Q ss_pred CCCCCcceeeecCCCcccC--HHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCC
Q 015450 76 GQPGEIRTLWIGDLQYWMD--ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (406)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~--~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~ 148 (406)
+++...+.|||.......+ +-.-.+.|.- -+.+-|+-...-|-.-..--+-|.++++|++......|+.+
T Consensus 80 Eepk~iaaiyV~DM~~~~~W~~P~a~~wiDA---~kafYVigs~~~GgMGA~~A~pF~~e~aA~~faa~~GGrvl 151 (176)
T COG4314 80 EEPKGIAAIYVSDMGNAADWTEPGADNWIDA---KKAFYVIGSQRIGGMGATLASPFSDEEAAERFAADNGGRVL 151 (176)
T ss_pred cCcCceeEEEEeccccccCcCCCCcccceec---cceEEEecccccCCccchhcccccCHHHHHHHHHhcCCeEE
Confidence 4567788899988763333 2222223322 12333333322222211122449999999999887665544
No 303
>PRK11901 hypothetical protein; Reviewed
Probab=25.79 E-value=5.2e+02 Score=23.70 Aligned_cols=64 Identities=22% Similarity=0.292 Sum_probs=42.2
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEE--EEccHHHHHHHHHHcCC
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFI--EFISRAGAERVLQTFNG 145 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V--~f~~~~~a~~a~~~l~~ 145 (406)
.+....+|-|..+ .+++.|..|.++.+ +..+++......|+.- |..| .|.+.++|+.|++.|-.
T Consensus 241 ~p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 241 APASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 3455666766654 45778888888775 4556666655444432 2222 58999999999988755
No 304
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=25.77 E-value=79 Score=29.32 Aligned_cols=62 Identities=23% Similarity=0.298 Sum_probs=45.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCcEE-EEEee-CC-------CeEEEEEeCChHHHHHHHHHhcCCcc
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQYGQLV-HVKIP-AG-------KRCGFVQFADRSCAEEALRMLNGTQL 336 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~-~v~i~-~~-------~g~afV~F~~~~~A~~A~~~l~g~~~ 336 (406)
-..|.|.+||...++++|.+....|-.-. ...+. .+ .+.|+|.|...++...-...++|+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 46788999999999999988877754322 22222 11 35889999999998877777788774
No 305
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=25.63 E-value=23 Score=31.44 Aligned_cols=8 Identities=13% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHhhhh
Q 015450 95 ETYLNTCF 102 (406)
Q Consensus 95 ~~~l~~~f 102 (406)
++.|..++
T Consensus 225 ~~~l~~~l 232 (264)
T PF06003_consen 225 DEALKSML 232 (264)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 34455544
No 306
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=25.46 E-value=2.1e+02 Score=20.90 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=37.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhcc-------C-CcEEEEEeeC-----------CCe-EEEEEeCChHHHHHHHHHhcCCcc
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQ-------Y-GQLVHVKIPA-----------GKR-CGFVQFADRSCAEEALRMLNGTQL 336 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~-------~-G~i~~v~i~~-----------~~g-~afV~F~~~~~A~~A~~~l~g~~~ 336 (406)
++|| |..+++++++.++.++ . |.|.++.--- .+| +.++.|.-..++.+.++. ...+
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler--~lri 85 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK--ALKL 85 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH--HhCC
Confidence 4555 4456677666555444 3 4777665411 133 678899877777777664 3456
Q ss_pred CCcEEEE
Q 015450 337 GGQNIRL 343 (406)
Q Consensus 337 ~g~~l~v 343 (406)
+...|+-
T Consensus 86 ~e~VlR~ 92 (97)
T CHL00123 86 DENVLRY 92 (97)
T ss_pred CCCeEEE
Confidence 6666653
No 307
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=25.30 E-value=1.2e+02 Score=20.52 Aligned_cols=63 Identities=8% Similarity=-0.005 Sum_probs=40.3
Q ss_pred HHHHHHHHhhCC-CcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCC
Q 015450 188 YMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (406)
Q Consensus 188 ~~l~~~f~~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~ 254 (406)
++|.+.| +..| .+..+.-+..+.++..-..-||+.....+... .++=+.+.++.+.|+.....
T Consensus 2 ~~I~~~L-~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEAL-KDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHH-HHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 3567777 4444 56667767766666666677888766543333 34556678888888766543
No 308
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.93 E-value=2.7e+02 Score=22.18 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=35.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccC---CcEEEEEeeCC---------------Ce-EEEEEeCChHH
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQY---GQLVHVKIPAG---------------KR-CGFVQFADRSC 323 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~---G~i~~v~i~~~---------------~g-~afV~F~~~~~ 323 (406)
.+|++.-+...+++++.++..++- +++.+|.+.+- +. |-+|.|+|-+.
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 579999999999999999998865 56777777432 33 66777776543
No 309
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=24.67 E-value=1.8e+02 Score=21.85 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=36.8
Q ss_pred EEcCCCCCCCHHHHHHHhccCCcEEE--EEe-eCCCeEEEEEeCChHHHHHHHHHh
Q 015450 279 FVGNLDSIVTDEHLRELFSQYGQLVH--VKI-PAGKRCGFVQFADRSCAEEALRML 331 (406)
Q Consensus 279 ~V~nlp~~~t~e~l~~~F~~~G~i~~--v~i-~~~~g~afV~F~~~~~A~~A~~~l 331 (406)
+..++...+.-.+|+++++.=--+.. ++| ..++...|+.|.+.+.+++.+..|
T Consensus 50 ~~~~~~~~w~ls~Ir~v~~RRylLr~~alEiF~~d~~~~f~~F~~~~~~k~vv~~l 105 (108)
T cd01201 50 YCEELHGKWPFSEIRAIFSRRYLLQNTALELFLASRTSIFFAFPDQNAVKKVVYAL 105 (108)
T ss_pred ccccccceeeHHHHHHHHHHhhhcccceEEEEEeCCceEEEEeCcHHHHHHHHhhc
Confidence 34566677888999999975212222 222 345678999999999998888764
No 310
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=24.32 E-value=3e+02 Score=29.21 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=12.2
Q ss_pred ceEEEEEccHHHHHHHHH
Q 015450 124 GYGFIEFISRAGAERVLQ 141 (406)
Q Consensus 124 g~a~V~f~~~~~a~~a~~ 141 (406)
+...+.|.+.-.+....+
T Consensus 546 ~~L~L~f~t~~la~~f~~ 563 (824)
T PRK07764 546 DTLVLGFSTGGLARRFAS 563 (824)
T ss_pred CEEEEecCCHHHHHHHhc
Confidence 456677777777766654
No 311
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=24.30 E-value=1e+02 Score=25.06 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHhccCCcEEEEEeeCCCeEE-EEEeCC
Q 015450 285 SIVTDEHLRELFSQYGQLVHVKIPAGKRCG-FVQFAD 320 (406)
Q Consensus 285 ~~~t~e~l~~~F~~~G~i~~v~i~~~~g~a-fV~F~~ 320 (406)
-.+|-++|+++|.+|+.-..+.-..+..|- .|.|++
T Consensus 107 hgcT~e~I~~~F~~ys~~~~~e~~~~~eFD~~i~Fed 143 (175)
T PF12993_consen 107 HGCTLEDILELFHKYSDNVHCEEMDNGEFDYLIYFED 143 (175)
T ss_pred CCcCHHHHHHHHHHhcCCeEEEeecCCCCCEEEEecC
Confidence 468999999999999975555444444443 566663
No 312
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=23.46 E-value=1.4e+02 Score=20.09 Aligned_cols=63 Identities=8% Similarity=0.058 Sum_probs=39.2
Q ss_pred HHHHHHHHhhCC-CcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCC
Q 015450 188 YMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (406)
Q Consensus 188 ~~l~~~f~~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~ 254 (406)
++|.+.| ...| .|..+.-+....++..-...||++....+..+ .++=+.+.+..+.|+....+
T Consensus 2 ~~I~~~L-~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEEL-KDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHH-HHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 4667777 4444 45556556665566666778888877655222 34455677888888766543
No 313
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=22.96 E-value=26 Score=23.60 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=26.4
Q ss_pred HHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhc
Q 015450 290 EHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 332 (406)
Q Consensus 290 e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~ 332 (406)
++|.+.|..+....++. +=.+|..|+|.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~v----kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV----KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhh----hhhhccCCCCHHHHHHHHHHhh
Confidence 67777776643332221 1168999999999998887654
No 314
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=22.38 E-value=2.4e+02 Score=22.58 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=27.2
Q ss_pred EEEEEeeCC-CeEEEEEeCChHHHHHHHHHhcCCc
Q 015450 302 LVHVKIPAG-KRCGFVQFADRSCAEEALRMLNGTQ 335 (406)
Q Consensus 302 i~~v~i~~~-~g~afV~F~~~~~A~~A~~~l~g~~ 335 (406)
|.++.++.. .||.||+....+++..++..+.+..
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 667777655 8999999998899999998876543
No 315
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.23 E-value=2.2e+02 Score=18.11 Aligned_cols=45 Identities=18% Similarity=0.120 Sum_probs=27.2
Q ss_pred HHHHHHHhccCC-cEEEEEeeCC----CeEEEEEeCChHHHHHHHHHhcCC
Q 015450 289 DEHLRELFSQYG-QLVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGT 334 (406)
Q Consensus 289 ~e~l~~~F~~~G-~i~~v~i~~~----~g~afV~F~~~~~A~~A~~~l~g~ 334 (406)
-.+|.+.|..+| .|.++..... .....++.++.+.+.+++++ +|.
T Consensus 13 L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~-~G~ 62 (65)
T cd04882 13 LHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE-RGV 62 (65)
T ss_pred HHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH-CCc
Confidence 356777787776 5666654332 23445556677777777775 454
No 316
>TIGR00082 rbfA ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype.
Probab=21.91 E-value=1.9e+02 Score=21.84 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=20.0
Q ss_pred cEEEEEeeCCCeEE--EEEeC-ChHHHHHHHHHhc
Q 015450 301 QLVHVKIPAGKRCG--FVQFA-DRSCAEEALRMLN 332 (406)
Q Consensus 301 ~i~~v~i~~~~g~a--fV~F~-~~~~A~~A~~~l~ 332 (406)
+|.+|++..|..+| ||++- +.+...++++.|+
T Consensus 34 tVt~V~lS~Dl~~AkVyvs~~~~~~~~~~~l~~L~ 68 (114)
T TIGR00082 34 TVTKVEVSKDLQHAKVFVDCYGDEEAIDRVVKALN 68 (114)
T ss_pred EEeEEEECCCCCEEEEEEEECCChhhHHHHHHHHH
Confidence 67889998887665 55554 4444455555554
No 317
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.72 E-value=2.7e+02 Score=27.90 Aligned_cols=9 Identities=11% Similarity=-0.090 Sum_probs=3.6
Q ss_pred CCcEEEEEe
Q 015450 299 YGQLVHVKI 307 (406)
Q Consensus 299 ~G~i~~v~i 307 (406)
++.+.....
T Consensus 537 l~I~~~~~~ 545 (728)
T KOG4592|consen 537 LGICSMYDN 545 (728)
T ss_pred cceeEeeec
Confidence 344443333
No 318
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=21.63 E-value=4.7e+02 Score=25.53 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=9.6
Q ss_pred eEEEcCCCccccHHHHHH
Q 015450 175 TIFVGDLAADVTDYMLQE 192 (406)
Q Consensus 175 ~l~v~~lp~~~~~~~l~~ 192 (406)
.||.-.|+++.+|.+|.+
T Consensus 438 ~LWaFklDY~~~EKeiAE 455 (817)
T KOG1925|consen 438 QLWAFKLDYDSMEKEIAE 455 (817)
T ss_pred HHHhhhcccchhhHHhhh
Confidence 345555566655555543
No 319
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.62 E-value=72 Score=18.52 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.5
Q ss_pred CCCHHHHHHHhccCCcE
Q 015450 286 IVTDEHLRELFSQYGQL 302 (406)
Q Consensus 286 ~~t~e~l~~~F~~~G~i 302 (406)
.+++++|++.+..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 47899999999998855
No 320
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.53 E-value=1.4e+02 Score=19.86 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=22.7
Q ss_pred HHHHHHhccCC-cEEEEEeeCCCeEEEEEeC
Q 015450 290 EHLRELFSQYG-QLVHVKIPAGKRCGFVQFA 319 (406)
Q Consensus 290 e~l~~~F~~~G-~i~~v~i~~~~g~afV~F~ 319 (406)
-||..+.-.|| .|.+-++..|...|||-|.
T Consensus 15 cdlcr~il~fGl~i~rgd~sTDGkWCyiv~w 45 (69)
T cd04894 15 CDLCRIILEFGLNITRGDDSTDGRWCYIVFW 45 (69)
T ss_pred cHHHHHHHHhceEEEecccccCCcEEEEEEE
Confidence 35666666678 6778888888889999885
No 321
>PRK12450 foldase protein PrsA; Reviewed
Probab=21.37 E-value=1.7e+02 Score=26.69 Aligned_cols=39 Identities=18% Similarity=0.401 Sum_probs=30.0
Q ss_pred CCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhc
Q 015450 286 IVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 332 (406)
Q Consensus 286 ~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~ 332 (406)
.+|+++|++++..|-. .+. ...|.+.+.+.|..++..+.
T Consensus 132 ~Vtd~evk~~y~~~~~--~~~------~~~I~~~~~~~A~~i~~~l~ 170 (309)
T PRK12450 132 TISKKDYRQAYDAYTP--TMT------AEIMQFEKEEDAKAALEAVK 170 (309)
T ss_pred CCCHHHHHHHHHHhCc--cce------eEEEEeCCHHHHHHHHHHHH
Confidence 4799999999998732 221 23578899999999999985
No 322
>PF02033 RBFA: Ribosome-binding factor A; InterPro: IPR000238 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosome-binding factor A [] (gene rbfA) is a bacterial protein that associates with free 30S ribosomal subunits. It does not associate with 30S subunits that are part of 70S ribosomes or polysomes. It is essential for efficient processing of 16S rRNA. Ribosome-binding factor A is a protein of from 13 to 15 Kd which is found in most bacteria. A putative chloroplastic form seems to exist in plants.; GO: 0006364 rRNA processing; PDB: 2R1C_A 2DYJ_B 2KZF_A 2E7G_A 1JOS_A 1KKG_A 1PA4_A.
Probab=21.29 E-value=2.3e+02 Score=20.75 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=23.8
Q ss_pred CcEEEEEeeCCCeEE--EEEeC-ChHHHHHHHHHhcCC
Q 015450 300 GQLVHVKIPAGKRCG--FVQFA-DRSCAEEALRMLNGT 334 (406)
Q Consensus 300 G~i~~v~i~~~~g~a--fV~F~-~~~~A~~A~~~l~g~ 334 (406)
-.|.+|++..|...| ||++. +.++-.++++.|+..
T Consensus 29 vtIt~V~ls~Dl~~a~Vy~~~~~~~~~~~~~~~~L~~~ 66 (104)
T PF02033_consen 29 VTITRVELSPDLSHAKVYVSILGDEEEQEEVLEALNKA 66 (104)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSSHHHHHHHHHHHHHT
T ss_pred EEEEEEEECCCCCEEEEEEEEecCchhHHHHHHHHHHH
Confidence 378999999987666 55553 566666666666543
No 323
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=21.28 E-value=76 Score=30.90 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=36.4
Q ss_pred eCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCC
Q 015450 308 PAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351 (406)
Q Consensus 308 ~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 351 (406)
..-..+++++|++...+.+|+..++|..+.+..+++..+.....
T Consensus 60 ~~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~ 103 (534)
T KOG2187|consen 60 PKMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVG 103 (534)
T ss_pred CCCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccccc
Confidence 33467999999999999999999999999888888877665443
No 324
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=20.96 E-value=91 Score=29.91 Aligned_cols=10 Identities=10% Similarity=0.142 Sum_probs=5.0
Q ss_pred cceeeecCCC
Q 015450 81 IRTLWIGDLQ 90 (406)
Q Consensus 81 ~~~l~v~~lp 90 (406)
...|-|+.|.
T Consensus 50 ~d~I~v~~l~ 59 (465)
T PF01690_consen 50 DDSISVRSLN 59 (465)
T ss_pred ccceEeeccC
Confidence 3445555554
No 325
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=20.42 E-value=5.3e+02 Score=23.78 Aligned_cols=115 Identities=12% Similarity=0.125 Sum_probs=59.0
Q ss_pred cCCCcccCHHHHhh----hhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeeccc
Q 015450 87 GDLQYWMDETYLNT----CFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASF 162 (406)
Q Consensus 87 ~~lp~~~~~~~l~~----~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~ 162 (406)
+|.+++-+-+.++. +++++|.-.++++.+.-. -.+|=+-|.|.-.-. +.+....+..++...++
T Consensus 118 T~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~--yP~GgGeV~~~v~p~-----~~l~~i~l~~~g~i~~i----- 185 (326)
T cd00874 118 TDVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGF--YPRGGGEVVLTVEPS-----KLLPPLLLEERGEIEKI----- 185 (326)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCc--CCCCCEEEEEEEecc-----cCCCcceeecCCCeEEE-----
Confidence 34555555566654 457888877777776543 233445555532211 01111111111111111
Q ss_pred CCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCC--CcceeEEEecCCCCCCcceEEEEec
Q 015450 163 GAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP--STKGAKVVIDRLTGRTKGYGFVRFG 224 (406)
Q Consensus 163 ~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g--~v~~~~~~~~~~~~~~~g~afv~f~ 224 (406)
.-..+..+++..+.+.++...- +.+. ...++.+..+...+.+.|++.+-+.
T Consensus 186 ----------rg~~~~~~l~~~va~r~~~~a~-~~L~~~~~~dv~i~~~~~~~~s~G~~i~L~a 238 (326)
T cd00874 186 ----------RGISHAANLPPHVAERQAEAAA-ALLRKALGLQIEIEPEDQSALGPGSGIVLWA 238 (326)
T ss_pred ----------EEEEEEccCCHHHHHHHHHHHH-HHHhhccCCCeEEEEEecCCCCCCEEEEEEE
Confidence 1256788999988887665443 2221 2234555555545677788765544
No 326
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.40 E-value=20 Score=33.63 Aligned_cols=73 Identities=4% Similarity=-0.141 Sum_probs=0.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
+.+.|+..++...+++++.-.|..||.|..+.+.+- +-.+||+-.+ ++|..+|..+.-..+.+..++|.++..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Done!