Query 015450
Match_columns 406
No_of_seqs 375 out of 3615
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 12:50:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.4E-45 4.9E-50 332.5 27.4 241 79-351 20-266 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.3E-44 4.3E-49 327.7 25.6 248 75-349 35-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 2.7E-35 9.3E-40 253.2 13.5 167 170-350 12-182 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 1.2E-32 4E-37 234.3 18.6 173 169-353 9-187 (196)
5 4f02_A Polyadenylate-binding p 100.0 4.1E-33 1.4E-37 239.7 15.0 171 80-257 14-184 (213)
6 2qfj_A FBP-interacting repress 100.0 1.8E-32 6.1E-37 236.8 18.2 178 172-354 27-210 (216)
7 1b7f_A Protein (SXL-lethal pro 100.0 3.9E-32 1.3E-36 225.1 19.0 159 172-346 2-168 (168)
8 1l3k_A Heterogeneous nuclear r 100.0 2.3E-32 8E-37 232.4 17.9 180 76-258 8-187 (196)
9 1fxl_A Paraneoplastic encephal 100.0 6.6E-32 2.3E-36 223.4 19.7 158 173-346 2-167 (167)
10 3md3_A Nuclear and cytoplasmic 100.0 5E-32 1.7E-36 223.9 18.9 159 174-347 1-165 (166)
11 1b7f_A Protein (SXL-lethal pro 100.0 1.6E-31 5.4E-36 221.4 18.2 165 80-251 2-168 (168)
12 1fxl_A Paraneoplastic encephal 100.0 2E-31 6.7E-36 220.6 18.7 164 81-251 2-167 (167)
13 3md3_A Nuclear and cytoplasmic 100.0 1.6E-31 5.6E-36 220.8 17.5 165 82-252 1-165 (166)
14 3nmr_A Cugbp ELAV-like family 100.0 3.4E-31 1.2E-35 220.9 19.1 161 172-347 2-175 (175)
15 3nmr_A Cugbp ELAV-like family 100.0 6.8E-31 2.3E-35 219.1 20.0 168 80-252 2-175 (175)
16 2qfj_A FBP-interacting repress 100.0 1.8E-31 6.1E-36 230.5 16.9 175 79-256 26-207 (216)
17 3pgw_A U1-A; protein-RNA compl 100.0 5.1E-31 1.7E-35 237.1 20.5 175 169-347 5-281 (282)
18 2cjk_A Nuclear polyadenylated 100.0 7.8E-32 2.7E-36 223.0 12.9 159 172-349 2-166 (167)
19 2adc_A Polypyrimidine tract-bi 100.0 1.9E-30 6.4E-35 225.6 21.1 174 170-349 31-228 (229)
20 2cjk_A Nuclear polyadenylated 100.0 1.4E-31 4.9E-36 221.4 12.0 165 80-254 2-166 (167)
21 2yh0_A Splicing factor U2AF 65 100.0 4E-31 1.4E-35 225.1 15.0 178 172-351 3-196 (198)
22 1fje_B Nucleolin RBD12, protei 100.0 3.4E-31 1.2E-35 220.9 12.3 164 169-349 9-174 (175)
23 3tyt_A Heterogeneous nuclear r 100.0 2.4E-30 8E-35 219.8 17.4 169 172-346 3-204 (205)
24 1qm9_A Polypyrimidine tract-bi 100.0 4E-30 1.4E-34 218.8 17.5 172 172-349 2-197 (198)
25 2g4b_A Splicing factor U2AF 65 100.0 7.6E-30 2.6E-34 212.1 16.9 152 172-346 3-171 (172)
26 2g4b_A Splicing factor U2AF 65 100.0 3.1E-29 1.1E-33 208.4 15.9 160 79-252 2-172 (172)
27 3tyt_A Heterogeneous nuclear r 100.0 7.2E-29 2.5E-33 210.7 16.5 156 80-245 3-194 (205)
28 3pgw_A U1-A; protein-RNA compl 100.0 2.7E-28 9.1E-33 219.3 19.9 165 77-252 5-281 (282)
29 3sde_A Paraspeckle component 1 100.0 2E-28 6.8E-33 217.1 17.3 157 167-351 16-181 (261)
30 1fje_B Nucleolin RBD12, protei 100.0 2E-29 6.7E-34 210.2 9.8 166 77-254 9-174 (175)
31 2yh0_A Splicing factor U2AF 65 100.0 1.8E-28 6.1E-33 208.7 15.9 167 80-256 3-196 (198)
32 3smz_A Protein raver-1, ribonu 100.0 5.2E-28 1.8E-32 217.6 19.8 173 80-257 94-267 (284)
33 2adc_A Polypyrimidine tract-bi 100.0 4.9E-28 1.7E-32 210.4 18.8 163 79-254 32-228 (229)
34 2ghp_A U4/U6 snRNA-associated 100.0 4E-28 1.4E-32 219.3 13.6 170 80-254 116-291 (292)
35 1qm9_A Polypyrimidine tract-bi 100.0 1.4E-27 4.8E-32 203.0 15.7 161 81-254 3-197 (198)
36 3sde_A Paraspeckle component 1 100.0 3E-27 1E-31 209.5 18.0 160 77-256 18-181 (261)
37 2i2y_A Fusion protein consists 99.9 1.7E-23 5.9E-28 169.1 12.3 138 212-350 9-149 (150)
38 2kn4_A Immunoglobulin G-bindin 99.9 8.4E-23 2.9E-27 166.7 15.9 146 204-353 3-154 (158)
39 2kn4_A Immunoglobulin G-bindin 99.9 6.7E-22 2.3E-26 161.3 13.7 144 110-256 2-152 (158)
40 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-20 4.2E-25 139.6 9.7 82 272-353 13-96 (105)
41 2cq1_A PTB-like protein L; RRM 99.8 6.7E-20 2.3E-24 136.0 13.4 84 270-353 10-95 (101)
42 4f25_A Polyadenylate-binding p 99.8 9.4E-21 3.2E-25 145.3 8.5 106 80-189 4-113 (115)
43 3r27_A HnRNP L, heterogeneous 99.8 3.3E-20 1.1E-24 135.8 10.9 80 271-350 17-98 (100)
44 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.6E-20 1.2E-24 150.5 11.6 80 273-352 37-122 (156)
45 1x4d_A Matrin 3; structural ge 99.8 4.3E-20 1.5E-24 136.8 10.5 79 273-351 13-94 (102)
46 4fxv_A ELAV-like protein 1; RN 99.8 3.7E-20 1.3E-24 137.6 9.9 75 274-348 18-98 (99)
47 4f25_A Polyadenylate-binding p 99.8 3E-20 1E-24 142.5 9.2 109 173-291 5-113 (115)
48 1wex_A Hypothetical protein (r 99.8 1.7E-19 5.9E-24 134.7 13.0 82 271-352 11-94 (104)
49 2wbr_A GW182, gawky, LD47780P; 99.8 7.7E-20 2.6E-24 128.5 9.4 75 273-347 5-79 (89)
50 2i2y_A Fusion protein consists 99.8 8.1E-20 2.8E-24 147.4 10.8 127 120-255 10-149 (150)
51 2ad9_A Polypyrimidine tract-bi 99.8 1.3E-19 4.3E-24 137.7 11.0 82 272-353 28-111 (119)
52 1x4c_A Splicing factor, argini 99.8 5.4E-19 1.8E-23 134.0 13.6 80 273-353 13-97 (108)
53 2dgu_A Heterogeneous nuclear r 99.8 4.5E-19 1.5E-23 133.3 13.1 81 272-354 8-88 (103)
54 2dnq_A RNA-binding protein 4B; 99.8 4.1E-19 1.4E-23 130.0 12.2 80 272-353 5-84 (90)
55 2cq3_A RNA-binding protein 9; 99.8 8.4E-19 2.9E-23 131.8 14.0 86 269-354 9-98 (103)
56 1x4a_A Splicing factor, argini 99.8 7E-19 2.4E-23 133.7 13.5 82 270-351 17-101 (109)
57 2cpj_A Non-POU domain-containi 99.8 4.2E-19 1.5E-23 132.4 11.9 81 271-351 11-91 (99)
58 1u6f_A Tcubp1, RNA-binding pro 99.8 4.4E-19 1.5E-23 141.2 12.7 83 270-352 37-125 (139)
59 2d9p_A Polyadenylate-binding p 99.8 5.8E-19 2E-23 132.7 12.7 85 270-354 10-98 (103)
60 1why_A Hypothetical protein ri 99.8 5.9E-19 2E-23 131.1 12.2 80 272-351 14-95 (97)
61 1x4f_A Matrin 3; structural ge 99.8 1.7E-19 5.9E-24 135.4 9.2 82 272-353 22-106 (112)
62 1x4g_A Nucleolysin TIAR; struc 99.8 4.3E-19 1.5E-23 134.9 11.4 82 272-353 22-103 (109)
63 2lea_A Serine/arginine-rich sp 99.8 8.3E-20 2.8E-24 144.0 7.6 121 217-353 5-131 (135)
64 2cph_A RNA binding motif prote 99.8 1E-18 3.5E-23 132.5 13.1 84 270-353 10-101 (107)
65 2dnz_A Probable RNA-binding pr 99.8 1E-18 3.4E-23 129.4 12.7 79 273-351 3-87 (95)
66 1whw_A Hypothetical protein ri 99.8 1.1E-18 3.8E-23 130.2 12.8 82 272-353 5-92 (99)
67 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.2E-18 4.3E-23 130.9 13.0 84 270-353 10-97 (103)
68 3pgw_S U1-70K; protein-RNA com 99.8 4.8E-20 1.7E-24 173.5 6.4 79 273-351 100-184 (437)
69 2dgs_A DAZ-associated protein 99.8 1.5E-18 5.1E-23 129.5 13.1 82 271-353 6-93 (99)
70 2dgt_A RNA-binding protein 30; 99.8 1.2E-18 4E-23 128.1 11.9 80 271-352 6-85 (92)
71 2dnm_A SRP46 splicing factor; 99.8 1E-18 3.5E-23 131.4 11.6 83 271-353 9-97 (103)
72 2ytc_A PRE-mRNA-splicing facto 99.8 5.1E-19 1.8E-23 128.0 9.6 77 271-347 8-85 (85)
73 2cqb_A Peptidyl-prolyl CIS-tra 99.8 7.9E-19 2.7E-23 131.8 10.8 84 271-354 8-97 (102)
74 2cpf_A RNA binding motif prote 99.8 8.7E-19 3E-23 130.5 10.9 81 273-353 3-92 (98)
75 3s8s_A Histone-lysine N-methyl 99.8 7.7E-19 2.6E-23 133.0 10.6 78 273-350 4-87 (110)
76 3q2s_C Cleavage and polyadenyl 99.8 2.1E-19 7.1E-24 154.8 8.5 75 274-348 67-149 (229)
77 1x5t_A Splicing factor 3B subu 99.8 5.9E-19 2E-23 130.9 9.6 80 274-353 4-90 (96)
78 2dgo_A Cytotoxic granule-assoc 99.8 3.8E-18 1.3E-22 131.0 14.4 84 270-353 10-99 (115)
79 1x5u_A Splicing factor 3B subu 99.8 1.8E-18 6.2E-23 130.5 12.4 84 270-353 10-99 (105)
80 2dgx_A KIAA0430 protein; RRM d 99.8 1.1E-18 3.7E-23 129.3 10.8 80 273-352 7-93 (96)
81 2cqd_A RNA-binding region cont 99.8 3.2E-18 1.1E-22 131.6 13.9 84 269-353 11-100 (116)
82 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.7E-19 1.9E-23 144.7 10.1 133 221-353 11-156 (165)
83 1x5s_A Cold-inducible RNA-bind 99.8 1.1E-18 3.7E-23 131.0 10.9 83 271-353 8-96 (102)
84 2dnh_A Bruno-like 5, RNA bindi 99.8 2.2E-18 7.4E-23 130.1 12.5 82 272-353 12-101 (105)
85 2lxi_A RNA-binding protein 10; 99.8 1.7E-19 5.9E-24 131.9 6.0 77 275-351 1-85 (91)
86 2cq0_A Eukaryotic translation 99.8 1.8E-18 6.3E-23 130.0 11.8 83 271-353 11-99 (103)
87 3md1_A Nuclear and cytoplasmic 99.8 1.2E-18 4.2E-23 125.4 10.4 76 275-350 1-82 (83)
88 2dnp_A RNA-binding protein 14; 99.8 1.8E-18 6.2E-23 126.5 11.3 79 271-351 5-83 (90)
89 2la4_A Nuclear and cytoplasmic 99.8 4.7E-19 1.6E-23 132.7 8.3 78 272-349 24-101 (101)
90 2do4_A Squamous cell carcinoma 99.8 3E-18 1E-22 128.1 12.7 82 270-351 12-98 (100)
91 2cpz_A CUG triplet repeat RNA- 99.8 1.8E-18 6E-23 132.9 11.5 84 270-353 20-109 (115)
92 2cpd_A Apobec-1 stimulating pr 99.8 3.9E-18 1.3E-22 127.2 13.1 79 271-351 11-91 (99)
93 2lkz_A RNA-binding protein 5; 99.8 5.6E-19 1.9E-23 129.5 8.3 77 272-348 6-94 (95)
94 2fy1_A RNA-binding motif prote 99.8 2.1E-18 7E-23 132.3 11.7 79 273-351 5-88 (116)
95 1wf1_A RNA-binding protein RAL 99.8 1.6E-18 5.4E-23 131.9 10.9 77 273-351 25-102 (110)
96 1x5p_A Negative elongation fac 99.8 5.2E-18 1.8E-22 125.9 13.2 80 272-353 12-91 (97)
97 2dhg_A TRNA selenocysteine ass 99.8 1.9E-18 6.4E-23 130.2 10.9 82 272-353 6-94 (104)
98 1whx_A Hypothetical protein ri 99.8 1.2E-18 4E-23 132.5 9.7 78 274-351 9-86 (111)
99 1x4h_A RNA-binding protein 28; 99.8 4.5E-18 1.6E-22 129.8 13.0 85 270-354 10-106 (111)
100 3ex7_B RNA-binding protein 8A; 99.8 1.4E-18 4.8E-23 135.8 10.2 82 271-352 18-105 (126)
101 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.6E-18 5.4E-23 125.5 9.7 75 273-347 5-85 (85)
102 2cq2_A Hypothetical protein LO 99.8 1.4E-18 4.8E-23 130.4 9.5 80 273-352 23-109 (114)
103 1wi8_A EIF-4B, eukaryotic tran 99.8 4.5E-18 1.5E-22 128.1 12.2 80 272-353 12-98 (104)
104 4fxv_A ELAV-like protein 1; RN 99.8 1.8E-18 6.3E-23 128.4 9.8 82 171-253 17-98 (99)
105 2do0_A HnRNP M, heterogeneous 99.8 1.2E-17 4.1E-22 128.0 14.6 82 271-352 11-97 (114)
106 2x1f_A MRNA 3'-END-processing 99.8 2.4E-18 8.3E-23 127.5 10.3 77 275-351 2-84 (96)
107 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.9E-18 6.7E-23 125.6 9.6 76 274-349 5-86 (87)
108 2cqh_A IGF-II mRNA-binding pro 99.8 8.2E-19 2.8E-23 129.2 7.6 79 273-352 6-86 (93)
109 2e5h_A Zinc finger CCHC-type a 99.8 3.8E-18 1.3E-22 126.0 11.2 78 270-347 11-94 (94)
110 2dgp_A Bruno-like 4, RNA bindi 99.8 3.4E-18 1.2E-22 129.3 11.0 84 270-353 8-100 (106)
111 2jvr_A Nucleolar protein 3; RN 99.8 1E-18 3.4E-23 131.8 7.7 77 274-350 27-106 (111)
112 2cpi_A CCR4-NOT transcription 99.8 4.2E-18 1.4E-22 129.7 11.1 79 272-350 12-102 (111)
113 2kvi_A Nuclear polyadenylated 99.8 1.6E-18 5.4E-23 128.4 8.4 79 272-352 7-86 (96)
114 2cpe_A RNA-binding protein EWS 99.8 4.7E-18 1.6E-22 130.1 11.3 83 270-352 10-106 (113)
115 2jvo_A Nucleolar protein 3; nu 99.8 2.5E-18 8.6E-23 129.9 9.6 81 270-352 26-106 (108)
116 2dgv_A HnRNP M, heterogeneous 99.8 2.9E-18 9.8E-23 126.1 9.7 79 273-351 6-88 (92)
117 4a8x_A RNA-binding protein wit 99.8 3.8E-18 1.3E-22 124.3 10.2 77 274-350 3-86 (88)
118 2cqc_A Arginine/serine-rich sp 99.8 4.7E-18 1.6E-22 125.8 10.6 79 270-348 10-94 (95)
119 2dng_A Eukaryotic translation 99.8 8.9E-18 3E-22 126.2 12.2 80 271-352 11-96 (103)
120 2ywk_A Putative RNA-binding pr 99.8 3.4E-18 1.2E-22 126.5 9.7 78 271-348 12-94 (95)
121 2xnq_A Nuclear polyadenylated 99.8 5.8E-18 2E-22 125.4 10.9 78 271-350 18-96 (97)
122 2hvz_A Splicing factor, argini 99.8 2.3E-18 7.9E-23 128.9 8.7 76 276-351 1-77 (101)
123 2err_A Ataxin-2-binding protei 99.8 2.8E-18 9.7E-23 130.1 9.1 80 270-349 24-107 (109)
124 2kxn_B Transformer-2 protein h 99.7 5.4E-18 1.8E-22 132.3 10.6 81 270-350 41-127 (129)
125 1p27_B RNA-binding protein 8A; 99.7 5.8E-18 2E-22 128.0 10.2 79 272-350 20-104 (106)
126 3beg_B Splicing factor, argini 99.7 4.7E-18 1.6E-22 130.1 9.5 76 274-350 15-95 (115)
127 2lea_A Serine/arginine-rich sp 99.7 2.8E-18 9.5E-23 135.2 8.4 125 124-256 5-129 (135)
128 2fc9_A NCL protein; structure 99.7 1.5E-17 5.2E-22 124.4 12.0 81 271-351 11-93 (101)
129 2khc_A Testis-specific RNP-typ 99.7 6.9E-18 2.3E-22 130.2 10.3 78 270-347 35-118 (118)
130 1oo0_B CG8781-PA, drosophila Y 99.7 7.1E-18 2.4E-22 128.4 10.2 81 271-351 22-108 (110)
131 2dh8_A DAZ-associated protein 99.7 6.2E-18 2.1E-22 127.5 9.8 83 270-353 11-99 (105)
132 2jrs_A RNA-binding protein 39; 99.7 9.9E-18 3.4E-22 126.7 10.8 80 271-350 22-107 (108)
133 1u6f_A Tcubp1, RNA-binding pro 99.7 2.5E-17 8.7E-22 131.0 13.7 83 78-162 39-121 (139)
134 3s8s_A Histone-lysine N-methyl 99.7 8.1E-18 2.8E-22 127.3 10.2 85 171-256 4-88 (110)
135 2lxi_A RNA-binding protein 10; 99.7 2.9E-18 1E-22 125.3 6.9 84 173-257 1-86 (91)
136 2e5j_A Methenyltetrahydrofolat 99.7 1.5E-17 5.2E-22 123.4 10.9 80 272-351 16-96 (97)
137 2div_A TRNA selenocysteine ass 99.7 9.5E-18 3.3E-22 125.1 9.4 79 272-350 6-95 (99)
138 1s79_A Lupus LA protein; RRM, 99.7 6.5E-18 2.2E-22 126.1 8.5 75 273-348 9-88 (103)
139 2a3j_A U1 small nuclear ribonu 99.7 1.1E-17 3.9E-22 129.4 10.1 79 273-351 27-112 (127)
140 3ucg_A Polyadenylate-binding p 99.7 1.3E-17 4.4E-22 121.8 9.9 74 275-349 6-85 (89)
141 2la6_A RNA-binding protein FUS 99.7 1.4E-17 4.8E-22 124.1 10.2 78 270-347 8-99 (99)
142 2khc_A Testis-specific RNP-typ 99.7 2.4E-17 8.1E-22 127.2 11.8 80 77-156 36-115 (118)
143 3ulh_A THO complex subunit 4; 99.7 1.8E-17 6.2E-22 125.5 10.5 77 271-347 25-106 (107)
144 2cpx_A Hypothetical protein FL 99.7 2.6E-17 8.8E-22 126.4 11.4 82 272-353 22-109 (115)
145 2div_A TRNA selenocysteine ass 99.7 1.9E-17 6.5E-22 123.4 10.3 87 77-163 5-94 (99)
146 2lkz_A RNA-binding protein 5; 99.7 8.5E-18 2.9E-22 123.2 8.1 83 170-253 6-94 (95)
147 2cpz_A CUG triplet repeat RNA- 99.7 3.2E-17 1.1E-21 125.8 11.6 86 76-163 20-105 (115)
148 2cqg_A TDP-43, TAR DNA-binding 99.7 5.4E-17 1.8E-21 121.9 12.6 82 270-353 10-97 (103)
149 2dis_A Unnamed protein product 99.7 3E-17 1E-21 124.7 11.3 80 273-352 6-95 (109)
150 1wg1_A KIAA1579 protein, homol 99.7 1.5E-17 5.2E-22 120.9 9.2 76 274-350 4-79 (88)
151 2la6_A RNA-binding protein FUS 99.7 3.1E-17 1.1E-21 122.2 11.0 79 78-156 10-96 (99)
152 1nu4_A U1A RNA binding domain; 99.7 1.4E-17 4.7E-22 123.7 8.9 79 273-351 6-91 (97)
153 2dnz_A Probable RNA-binding pr 99.7 4.2E-17 1.4E-21 120.6 11.5 82 79-162 3-84 (95)
154 2fc8_A NCL protein; structure 99.7 4.9E-17 1.7E-21 121.9 11.9 81 271-351 11-94 (102)
155 1x5u_A Splicing factor 3B subu 99.7 4.7E-17 1.6E-21 122.7 11.8 85 77-163 11-95 (105)
156 2dgp_A Bruno-like 4, RNA bindi 99.7 3.9E-17 1.3E-21 123.4 11.4 87 77-163 9-96 (106)
157 3n9u_C Cleavage and polyadenyl 99.7 9.4E-18 3.2E-22 135.3 8.4 78 79-156 53-132 (156)
158 1x4e_A RNA binding motif, sing 99.7 5.2E-18 1.8E-22 122.7 6.1 75 273-347 3-83 (85)
159 2m2b_A RNA-binding protein 10; 99.7 7.9E-18 2.7E-22 132.2 7.6 83 270-353 18-112 (131)
160 2jrs_A RNA-binding protein 39; 99.7 4.7E-17 1.6E-21 123.0 11.6 85 75-161 20-104 (108)
161 1sjr_A Polypyrimidine tract-bi 99.7 2.9E-17 9.8E-22 131.0 10.8 79 274-352 45-127 (164)
162 2e5i_A Heterogeneous nuclear r 99.7 9.1E-17 3.1E-21 123.0 13.2 77 276-352 26-105 (124)
163 1x4b_A Heterogeneous nuclear r 99.7 2.2E-17 7.4E-22 126.9 9.6 79 273-352 25-109 (116)
164 2cqp_A RNA-binding protein 12; 99.7 1.1E-17 3.7E-22 124.5 7.5 80 271-350 11-96 (98)
165 1wez_A HnRNP H', FTP-3, hetero 99.7 4E-17 1.4E-21 121.8 10.6 78 271-350 11-93 (102)
166 1p1t_A Cleavage stimulation fa 99.7 5.5E-18 1.9E-22 127.7 6.0 78 274-351 7-90 (104)
167 2nlw_A Eukaryotic translation 99.7 3E-17 1E-21 123.6 10.0 78 273-350 13-101 (105)
168 2dnm_A SRP46 splicing factor; 99.7 2.8E-17 9.6E-22 123.5 9.8 84 77-162 9-92 (103)
169 2dgs_A DAZ-associated protein 99.7 7.4E-17 2.5E-21 120.2 12.0 83 77-162 6-88 (99)
170 3zzy_A Polypyrimidine tract-bi 99.7 3.7E-17 1.3E-21 125.6 10.5 80 274-353 27-110 (130)
171 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2E-17 6.9E-22 135.4 9.6 128 128-256 11-154 (165)
172 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.1E-17 3.7E-22 124.8 7.3 77 272-350 16-99 (100)
173 3p5t_L Cleavage and polyadenyl 99.7 9.1E-18 3.1E-22 122.7 6.7 77 82-158 2-80 (90)
174 2dgw_A Probable RNA-binding pr 99.7 3.9E-17 1.3E-21 119.7 10.0 77 272-350 7-88 (91)
175 2dnh_A Bruno-like 5, RNA bindi 99.7 1.1E-16 3.7E-21 120.7 12.8 86 77-163 11-97 (105)
176 2hgn_A Heterogeneous nuclear r 99.7 3.3E-18 1.1E-22 134.4 4.5 77 272-350 43-124 (139)
177 2e5g_A U6 snRNA-specific termi 99.7 6.5E-17 2.2E-21 119.2 11.2 78 274-352 7-85 (94)
178 2cq0_A Eukaryotic translation 99.7 5.5E-17 1.9E-21 121.9 11.0 84 77-162 11-94 (103)
179 2cq4_A RNA binding motif prote 99.7 7.3E-18 2.5E-22 129.2 6.2 78 273-351 23-106 (114)
180 2kxn_B Transformer-2 protein h 99.7 5.1E-17 1.7E-21 126.8 11.0 83 77-161 42-124 (129)
181 3ns6_A Eukaryotic translation 99.7 1.7E-17 5.7E-22 123.7 7.7 82 78-160 3-90 (100)
182 2diu_A KIAA0430 protein; struc 99.7 9.3E-17 3.2E-21 113.9 11.0 77 274-354 7-89 (96)
183 2jwn_A Embryonic polyadenylate 99.7 2.7E-17 9.2E-22 128.1 9.2 77 274-351 35-117 (124)
184 1wg5_A Heterogeneous nuclear r 99.7 8.6E-17 2.9E-21 120.8 11.6 79 272-351 12-96 (104)
185 2rs2_A Musashi-1, RNA-binding 99.7 4.6E-17 1.6E-21 123.3 10.1 80 271-351 21-106 (109)
186 3s7r_A Heterogeneous nuclear r 99.7 5.3E-17 1.8E-21 117.9 10.0 75 271-346 7-87 (87)
187 2do4_A Squamous cell carcinoma 99.7 8.2E-17 2.8E-21 120.2 11.2 83 77-162 13-95 (100)
188 3p5t_L Cleavage and polyadenyl 99.7 2.4E-17 8.4E-22 120.4 8.0 82 174-256 2-85 (90)
189 2dhg_A TRNA selenocysteine ass 99.7 1.3E-16 4.6E-21 120.0 12.2 80 77-157 5-86 (104)
190 2dgo_A Cytotoxic granule-assoc 99.7 1.8E-16 6.1E-21 121.6 13.0 91 166-257 8-98 (115)
191 2cph_A RNA binding motif prote 99.7 1.5E-16 5E-21 120.5 12.2 85 77-163 11-97 (107)
192 2kt5_A RNA and export factor-b 99.7 1.7E-16 5.7E-21 123.5 12.8 82 271-352 31-117 (124)
193 3lqv_A PRE-mRNA branch site pr 99.7 7.2E-17 2.5E-21 123.8 10.6 78 273-350 6-86 (115)
194 3n9u_C Cleavage and polyadenyl 99.7 3.9E-17 1.3E-21 131.7 9.4 75 274-348 54-136 (156)
195 1p27_B RNA-binding protein 8A; 99.7 8.7E-17 3E-21 121.5 10.7 82 78-161 20-101 (106)
196 3lqv_A PRE-mRNA branch site pr 99.7 6.2E-17 2.1E-21 124.2 9.8 105 78-200 5-109 (115)
197 1x5o_A RNA binding motif, sing 99.7 1.4E-16 4.6E-21 122.1 11.7 79 271-349 21-112 (114)
198 1sjq_A Polypyrimidine tract-bi 99.7 5.7E-17 2E-21 119.8 9.1 79 77-163 12-92 (105)
199 2bz2_A Negative elongation fac 99.7 4.9E-17 1.7E-21 125.3 9.1 79 272-352 36-114 (121)
200 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.9E-17 9.9E-22 122.5 7.6 78 78-157 16-94 (100)
201 2d9p_A Polyadenylate-binding p 99.7 2.6E-16 9E-21 118.1 12.9 83 76-162 10-92 (103)
202 3bs9_A Nucleolysin TIA-1 isofo 99.7 6.9E-17 2.4E-21 117.3 9.2 83 171-254 4-86 (87)
203 3md1_A Nuclear and cytoplasmic 99.7 9.4E-17 3.2E-21 115.5 9.8 81 174-255 2-82 (83)
204 1x4h_A RNA-binding protein 28; 99.7 1.3E-16 4.4E-21 121.7 11.1 85 77-163 11-101 (111)
205 1fjc_A Nucleolin RBD2, protein 99.7 8.3E-17 2.8E-21 119.2 9.7 81 271-351 12-93 (96)
206 2e44_A Insulin-like growth fac 99.7 9.8E-17 3.4E-21 118.8 10.1 78 273-350 13-93 (96)
207 1x4e_A RNA binding motif, sing 99.7 3.4E-17 1.1E-21 118.4 7.3 75 79-153 3-77 (85)
208 2hzc_A Splicing factor U2AF 65 99.7 5.5E-17 1.9E-21 117.8 8.4 71 274-345 5-86 (87)
209 2hvz_A Splicing factor, argini 99.7 7.4E-17 2.5E-21 120.7 9.3 100 174-284 1-100 (101)
210 2cqc_A Arginine/serine-rich sp 99.7 1.1E-16 3.9E-21 118.2 10.2 86 167-253 9-94 (95)
211 1whw_A Hypothetical protein ri 99.7 1.5E-16 5E-21 118.6 10.9 87 170-257 5-91 (99)
212 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.2E-16 4E-21 127.4 10.9 78 269-346 57-140 (140)
213 2ek1_A RNA-binding protein 12; 99.7 1.6E-17 5.6E-22 122.8 5.5 76 273-348 13-94 (95)
214 2x1f_A MRNA 3'-END-processing 99.7 8.7E-17 3E-21 119.0 9.4 85 172-257 1-85 (96)
215 2krb_A Eukaryotic translation 99.7 2.7E-17 9.1E-22 117.6 6.3 70 275-344 1-81 (81)
216 1s79_A Lupus LA protein; RRM, 99.7 1.1E-16 3.6E-21 119.5 9.6 78 78-157 8-85 (103)
217 2cpy_A RNA-binding protein 12; 99.7 4.7E-17 1.6E-21 124.5 7.9 79 271-350 11-95 (114)
218 1x5s_A Cold-inducible RNA-bind 99.7 1.9E-16 6.5E-21 118.7 10.9 88 169-257 8-95 (102)
219 2fy1_A RNA-binding motif prote 99.7 3.4E-16 1.2E-20 119.9 12.4 86 170-257 4-89 (116)
220 1x5t_A Splicing factor 3B subu 99.7 1.6E-16 5.4E-21 117.7 10.2 86 171-257 3-89 (96)
221 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.4E-16 4.8E-21 119.4 9.8 88 169-257 8-95 (102)
222 2kt5_A RNA and export factor-b 99.7 4.2E-16 1.4E-20 121.2 12.9 86 169-256 31-116 (124)
223 3ns6_A Eukaryotic translation 99.7 6.4E-17 2.2E-21 120.5 7.8 83 171-254 4-93 (100)
224 3d2w_A TAR DNA-binding protein 99.7 1.5E-16 5.1E-21 115.6 9.6 77 271-351 7-86 (89)
225 2rs2_A Musashi-1, RNA-binding 99.7 8.4E-17 2.9E-21 121.9 8.5 85 75-162 19-103 (109)
226 2mss_A Protein (musashi1); RNA 99.7 3.6E-17 1.2E-21 115.2 6.1 69 277-346 1-75 (75)
227 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.1E-16 3.9E-21 115.6 8.7 82 170-252 4-85 (85)
228 1wf0_A TDP-43, TAR DNA-binding 99.7 5.8E-17 2E-21 117.9 7.2 77 274-352 4-81 (88)
229 2dgv_A HnRNP M, heterogeneous 99.7 3.5E-16 1.2E-20 114.8 11.3 78 78-157 5-82 (92)
230 2ki2_A SS-DNA binding protein 99.7 1.6E-17 5.5E-22 121.5 3.9 75 276-351 2-82 (90)
231 2cqd_A RNA-binding region cont 99.7 1.9E-16 6.5E-21 121.6 10.1 84 76-162 12-95 (116)
232 2lcw_A RNA-binding protein FUS 99.5 3.1E-18 1.1E-22 131.7 0.0 79 273-351 5-97 (116)
233 2m2b_A RNA-binding protein 10; 99.7 1.3E-16 4.5E-21 125.2 9.3 81 77-158 19-105 (131)
234 2dng_A Eukaryotic translation 99.7 3.6E-16 1.2E-20 117.3 11.4 81 78-162 12-92 (103)
235 2e5h_A Zinc finger CCHC-type a 99.7 2.2E-16 7.4E-21 116.5 9.9 84 168-252 11-94 (94)
236 2db1_A Heterogeneous nuclear r 99.7 8.6E-17 2.9E-21 123.6 7.9 77 272-349 14-98 (118)
237 1fj7_A Nucleolin RBD1, protein 99.7 2.1E-16 7.1E-21 118.2 9.7 79 272-351 14-97 (101)
238 2ywk_A Putative RNA-binding pr 99.7 1.2E-16 4E-21 118.2 8.1 81 77-160 12-92 (95)
239 3u1l_A PRE-mRNA-splicing facto 99.7 1.6E-16 5.6E-21 135.6 10.1 83 271-353 130-233 (240)
240 1x5o_A RNA binding motif, sing 99.7 1.1E-15 3.7E-20 117.0 13.8 84 77-161 21-110 (114)
241 1oo0_B CG8781-PA, drosophila Y 99.7 1.5E-16 5E-21 121.1 8.7 82 78-161 23-104 (110)
242 2cq4_A RNA binding motif prote 99.7 6.3E-17 2.1E-21 123.9 6.4 81 78-161 22-102 (114)
243 2dnn_A RNA-binding protein 12; 99.7 1.4E-16 4.9E-21 119.8 8.2 73 274-348 15-92 (109)
244 3ex7_B RNA-binding protein 8A; 99.7 2.8E-16 9.7E-21 122.6 10.2 82 78-161 19-100 (126)
245 2hgl_A HNRPF protein, heteroge 99.7 8.9E-17 3E-21 125.8 7.2 76 272-348 41-124 (136)
246 2cq3_A RNA-binding protein 9; 99.7 7.6E-16 2.6E-20 115.5 12.1 84 76-163 10-93 (103)
247 3ulh_A THO complex subunit 4; 99.7 2.3E-16 7.8E-21 119.4 9.2 79 78-157 26-104 (107)
248 2cpf_A RNA binding motif prote 99.7 2.3E-16 7.7E-21 117.3 9.0 86 171-257 3-91 (98)
249 2cpe_A RNA-binding protein EWS 99.7 3.6E-16 1.2E-20 119.5 10.2 89 168-257 10-106 (113)
250 1wez_A HnRNP H', FTP-3, hetero 99.7 4.3E-16 1.5E-20 116.2 10.2 78 77-157 11-88 (102)
251 3r27_A HnRNP L, heterogeneous 99.7 1.9E-16 6.7E-21 115.7 8.0 78 79-162 19-96 (100)
252 2cqp_A RNA-binding protein 12; 99.7 4E-16 1.4E-20 116.0 9.9 84 170-254 12-95 (98)
253 1wex_A Hypothetical protein (r 99.7 8.9E-16 3E-20 114.4 11.7 79 79-163 13-91 (104)
254 1x4d_A Matrin 3; structural ge 99.7 2.2E-16 7.5E-21 116.8 8.1 78 79-162 13-91 (102)
255 3pgw_S U1-70K; protein-RNA com 99.7 3.2E-17 1.1E-21 154.3 4.1 86 170-256 99-184 (437)
256 2krb_A Eukaryotic translation 99.7 1.8E-16 6.3E-21 113.2 7.2 73 81-155 1-80 (81)
257 2dh8_A DAZ-associated protein 99.7 4.4E-16 1.5E-20 117.3 9.4 88 168-257 11-98 (105)
258 1wi8_A EIF-4B, eukaryotic tran 99.7 4.8E-16 1.6E-20 116.9 9.6 86 169-257 11-97 (104)
259 3s7r_A Heterogeneous nuclear r 99.7 5.1E-16 1.7E-20 112.6 9.4 82 168-251 6-87 (87)
260 2cq1_A PTB-like protein L; RRM 99.7 7.2E-16 2.5E-20 114.2 10.2 78 78-163 12-91 (101)
261 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.5E-16 5.2E-21 112.6 6.3 74 82-156 1-74 (77)
262 1x4a_A Splicing factor, argini 99.6 1.2E-15 4.2E-20 115.7 11.8 82 76-162 17-98 (109)
263 2ki2_A SS-DNA binding protein 99.6 1.4E-16 4.9E-21 116.4 6.3 75 82-157 2-76 (90)
264 1wg5_A Heterogeneous nuclear r 99.6 7.6E-16 2.6E-20 115.6 10.4 80 78-161 12-92 (104)
265 2ek1_A RNA-binding protein 12; 99.6 3.1E-16 1.1E-20 115.9 8.0 83 170-253 12-94 (95)
266 2wbr_A GW182, gawky, LD47780P; 99.6 3.2E-16 1.1E-20 110.1 7.5 74 172-252 6-79 (89)
267 1p1t_A Cleavage stimulation fa 99.6 5.7E-16 1.9E-20 116.5 9.4 85 172-257 7-91 (104)
268 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.5E-15 5.2E-20 113.9 11.6 87 168-257 10-96 (103)
269 2mss_A Protein (musashi1); RNA 99.6 3.2E-16 1.1E-20 110.2 7.2 75 175-251 1-75 (75)
270 2do0_A HnRNP M, heterogeneous 99.6 2.4E-15 8.2E-20 115.1 12.7 87 168-256 10-96 (114)
271 1x4f_A Matrin 3; structural ge 99.6 1.6E-15 5.5E-20 113.7 11.3 80 78-163 22-102 (112)
272 3ucg_A Polyadenylate-binding p 99.6 7E-16 2.4E-20 112.4 9.1 80 173-254 6-85 (89)
273 1wel_A RNA-binding protein 12; 99.6 4.8E-16 1.7E-20 120.8 8.5 79 77-156 21-99 (124)
274 2dgw_A Probable RNA-binding pr 99.6 1.4E-15 4.8E-20 111.3 10.4 82 170-255 7-88 (91)
275 2cqg_A TDP-43, TAR DNA-binding 99.6 1.8E-15 6.2E-20 113.5 11.3 89 166-257 8-96 (103)
276 3egn_A RNA-binding protein 40; 99.6 2.7E-16 9.3E-21 125.5 7.1 81 272-352 42-133 (143)
277 3q2s_C Cleavage and polyadenyl 99.6 3.6E-16 1.2E-20 134.5 8.2 79 79-157 66-146 (229)
278 4a8x_A RNA-binding protein wit 99.6 5.8E-16 2E-20 112.6 8.0 83 172-255 3-86 (88)
279 1uaw_A Mouse-musashi-1; RNP-ty 99.6 4.7E-16 1.6E-20 110.0 7.2 76 174-251 1-76 (77)
280 2db1_A Heterogeneous nuclear r 99.6 3.3E-16 1.1E-20 120.3 6.9 79 77-159 13-94 (118)
281 2dis_A Unnamed protein product 99.6 1.4E-15 4.8E-20 115.4 10.1 87 170-257 5-95 (109)
282 2dgx_A KIAA0430 protein; RRM d 99.6 1.3E-15 4.4E-20 112.6 9.6 83 170-256 6-92 (96)
283 1sjr_A Polypyrimidine tract-bi 99.6 2.7E-15 9.1E-20 119.7 12.0 84 78-165 43-126 (164)
284 2lmi_A GRSF-1, G-rich sequence 99.6 4.6E-16 1.6E-20 117.4 7.3 79 76-156 6-87 (107)
285 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.3E-15 4.6E-20 123.4 10.5 86 169-255 35-120 (156)
286 2ad9_A Polypyrimidine tract-bi 99.6 2.5E-15 8.4E-20 114.0 11.2 82 169-257 27-110 (119)
287 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 8.4E-16 2.9E-20 122.4 9.0 78 77-154 59-136 (140)
288 2f3j_A RNA and export factor b 99.6 9.2E-16 3.1E-20 126.4 9.2 80 271-350 84-168 (177)
289 2hgm_A HNRPF protein, heteroge 99.6 8.2E-16 2.8E-20 118.3 8.2 74 273-348 40-120 (126)
290 2cpy_A RNA-binding protein 12; 99.6 1E-15 3.5E-20 116.9 8.6 86 168-256 10-96 (114)
291 2jwn_A Embryonic polyadenylate 99.6 1E-15 3.6E-20 119.0 8.7 80 79-161 34-113 (124)
292 2dnn_A RNA-binding protein 12; 99.6 5.1E-16 1.7E-20 116.8 6.6 75 78-155 13-87 (109)
293 2cpi_A CCR4-NOT transcription 99.6 1E-15 3.4E-20 116.4 8.3 87 169-256 11-103 (111)
294 2err_A Ataxin-2-binding protei 99.6 1.7E-15 5.8E-20 114.7 9.5 85 167-254 23-107 (109)
295 2hgn_A Heterogeneous nuclear r 99.6 3E-16 1E-20 123.2 5.4 124 124-256 2-125 (139)
296 1x4c_A Splicing factor, argini 99.6 3.9E-15 1.3E-19 112.6 11.4 79 78-163 12-93 (108)
297 1iqt_A AUF1, heterogeneous nuc 99.6 3.4E-16 1.2E-20 110.1 5.1 74 83-157 1-74 (75)
298 1fj7_A Nucleolin RBD1, protein 99.6 3E-16 1E-20 117.3 5.1 81 77-161 13-93 (101)
299 2hgl_A HNRPF protein, heteroge 99.6 1.2E-15 4.1E-20 119.4 8.5 82 170-254 41-125 (136)
300 2a3j_A U1 small nuclear ribonu 99.6 2.3E-15 7.9E-20 116.4 10.1 79 79-162 27-109 (127)
301 2pe8_A Splicing factor 45; RRM 99.6 2.7E-15 9.3E-20 112.0 10.0 75 274-348 7-93 (105)
302 2nlw_A Eukaryotic translation 99.6 1.9E-15 6.4E-20 113.6 9.2 84 169-255 11-101 (105)
303 2xs2_A Deleted in azoospermia- 99.6 3.7E-16 1.3E-20 117.0 5.3 76 274-351 8-88 (102)
304 1why_A Hypothetical protein ri 99.6 5.6E-15 1.9E-19 109.4 11.6 79 78-162 14-92 (97)
305 2dha_A FLJ20171 protein; RRM d 99.6 3.8E-16 1.3E-20 120.0 5.3 75 273-348 21-104 (123)
306 1wel_A RNA-binding protein 12; 99.6 1.1E-15 3.8E-20 118.7 8.0 84 170-255 22-105 (124)
307 1x4b_A Heterogeneous nuclear r 99.6 2E-15 6.9E-20 115.9 9.0 84 172-257 26-109 (116)
308 2cpx_A Hypothetical protein FL 99.6 1.6E-15 5.5E-20 116.3 7.9 87 170-257 22-108 (115)
309 2fc8_A NCL protein; structure 99.6 4.5E-15 1.5E-19 111.1 9.7 86 168-257 10-95 (102)
310 2hgm_A HNRPF protein, heteroge 99.6 2.3E-15 7.8E-20 115.8 8.1 78 77-157 38-117 (126)
311 2dit_A HIV TAT specific factor 99.6 1E-14 3.6E-19 110.9 11.7 82 271-352 11-105 (112)
312 2xnq_A Nuclear polyadenylated 99.6 3.5E-15 1.2E-19 110.3 8.8 74 78-161 19-93 (97)
313 3zzy_A Polypyrimidine tract-bi 99.6 5.3E-15 1.8E-19 113.6 9.9 83 78-165 25-108 (130)
314 2lmi_A GRSF-1, G-rich sequence 99.6 2.1E-15 7.1E-20 113.8 7.6 84 169-255 7-93 (107)
315 1iqt_A AUF1, heterogeneous nuc 99.6 1.3E-15 4.5E-20 107.1 5.7 75 175-251 1-75 (75)
316 2la4_A Nuclear and cytoplasmic 99.6 6.3E-15 2.1E-19 110.1 9.7 77 170-253 24-100 (101)
317 2dnq_A RNA-binding protein 4B; 99.6 1.2E-14 4E-19 106.1 10.9 79 170-257 5-83 (90)
318 2e5i_A Heterogeneous nuclear r 99.6 3.9E-14 1.3E-18 108.3 14.2 80 79-164 23-103 (124)
319 2j8a_A Histone-lysine N-methyl 99.6 9.4E-16 3.2E-20 115.1 4.9 78 82-159 3-94 (136)
320 2fc9_A NCL protein; structure 99.6 5.2E-15 1.8E-19 110.5 9.0 83 169-256 11-93 (101)
321 2e5j_A Methenyltetrahydrofolat 99.6 1.7E-14 5.7E-19 106.8 11.6 80 170-255 16-95 (97)
322 2cpj_A Non-POU domain-containi 99.6 1.1E-14 3.7E-19 108.3 10.5 83 168-257 10-92 (99)
323 2ytc_A PRE-mRNA-splicing facto 99.6 6.9E-15 2.3E-19 106.1 9.0 76 77-160 8-84 (85)
324 2f3j_A RNA and export factor b 99.6 5.6E-15 1.9E-19 121.7 9.6 80 77-157 84-163 (177)
325 2voo_A Lupus LA protein; RNA-b 99.6 7.1E-15 2.4E-19 123.0 10.2 118 225-349 63-187 (193)
326 2j8a_A Histone-lysine N-methyl 99.6 3.8E-15 1.3E-19 111.8 7.3 80 174-254 3-96 (136)
327 2dha_A FLJ20171 protein; RRM d 99.6 4.9E-15 1.7E-19 113.7 7.8 81 171-254 21-105 (123)
328 2kvi_A Nuclear polyadenylated 99.6 1.2E-14 4.2E-19 107.3 9.6 74 78-159 7-81 (96)
329 2jvr_A Nucleolar protein 3; RN 99.6 5.5E-15 1.9E-19 111.3 7.7 79 171-254 26-105 (111)
330 2dgu_A Heterogeneous nuclear r 99.6 2.7E-14 9.2E-19 107.0 11.0 81 169-258 7-87 (103)
331 2jvo_A Nucleolar protein 3; nu 99.6 1.6E-14 5.5E-19 108.9 9.8 79 168-255 26-104 (108)
332 3beg_B Splicing factor, argini 99.6 1.2E-14 4.1E-19 111.1 9.0 76 79-161 14-92 (115)
333 2xs2_A Deleted in azoospermia- 99.6 2.2E-15 7.5E-20 112.8 4.8 75 78-155 6-80 (102)
334 1x4g_A Nucleolysin TIAR; struc 99.6 1.9E-14 6.6E-19 109.0 9.8 81 170-257 22-102 (109)
335 1fjc_A Nucleolin RBD2, protein 99.5 6.3E-15 2.2E-19 109.0 6.5 79 77-162 12-90 (96)
336 2lcw_A RNA-binding protein FUS 99.3 4.2E-16 1.4E-20 119.7 0.0 87 170-257 4-98 (116)
337 2dnl_A Cytoplasmic polyadenyla 99.5 9.7E-15 3.3E-19 111.5 7.5 65 78-143 5-72 (114)
338 1whx_A Hypothetical protein ri 99.5 1E-14 3.6E-19 110.6 7.4 76 79-162 8-83 (111)
339 2dgt_A RNA-binding protein 30; 99.5 4.4E-14 1.5E-18 103.4 10.5 80 169-257 6-85 (92)
340 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.2E-13 4.2E-18 101.6 12.7 67 285-353 27-94 (100)
341 1nu4_A U1A RNA binding domain; 99.5 6.9E-15 2.4E-19 109.0 5.9 83 170-256 5-91 (97)
342 1wf1_A RNA-binding protein RAL 99.5 4.8E-14 1.7E-18 106.9 10.7 78 170-256 24-102 (110)
343 2dnp_A RNA-binding protein 14; 99.5 3.2E-14 1.1E-18 103.7 9.2 79 169-256 5-83 (90)
344 2e5g_A U6 snRNA-specific termi 99.5 5E-14 1.7E-18 103.6 10.2 80 170-256 5-84 (94)
345 2cpd_A Apobec-1 stimulating pr 99.5 5.6E-14 1.9E-18 104.4 10.6 80 168-256 10-91 (99)
346 2dnl_A Cytoplasmic polyadenyla 99.5 5E-14 1.7E-18 107.5 10.5 72 273-347 6-86 (114)
347 2cqh_A IGF-II mRNA-binding pro 99.5 2.4E-14 8.1E-19 105.2 8.3 80 170-257 5-86 (93)
348 3v4m_A Splicing factor U2AF 65 99.5 2.5E-14 8.4E-19 106.9 8.5 76 273-348 3-96 (105)
349 2cq2_A Hypothetical protein LO 99.5 1.6E-14 5.3E-19 108.4 7.4 76 79-160 23-103 (114)
350 3d2w_A TAR DNA-binding protein 99.5 1E-14 3.5E-19 105.8 6.2 77 78-163 8-84 (89)
351 2e44_A Insulin-like growth fac 99.5 3.2E-14 1.1E-18 105.1 9.0 79 78-162 12-91 (96)
352 2diu_A KIAA0430 protein; struc 99.5 1.1E-13 3.8E-18 98.1 10.6 76 171-257 6-87 (96)
353 1wg1_A KIAA1579 protein, homol 99.5 3.2E-14 1.1E-18 103.2 8.0 77 171-255 3-79 (88)
354 1x5p_A Negative elongation fac 99.5 2.5E-13 8.4E-18 100.4 11.7 81 168-257 10-90 (97)
355 2hzc_A Splicing factor U2AF 65 99.5 3E-14 1E-18 103.2 6.3 71 78-155 3-84 (87)
356 3egn_A RNA-binding protein 40; 99.5 2.5E-14 8.6E-19 114.0 6.3 86 170-256 42-132 (143)
357 3ue2_A Poly(U)-binding-splicin 99.5 8.9E-14 3E-18 105.8 8.7 75 274-348 19-108 (118)
358 3tht_A Alkylated DNA repair pr 99.5 7.6E-14 2.6E-18 125.7 9.5 77 271-347 14-97 (345)
359 1wf0_A TDP-43, TAR DNA-binding 99.5 7.4E-14 2.5E-18 101.3 6.2 76 79-163 3-78 (88)
360 3s6e_A RNA-binding protein 39; 99.5 2.6E-13 9E-18 102.4 9.2 76 273-348 5-92 (114)
361 2bz2_A Negative elongation fac 99.4 5.9E-13 2E-17 102.3 10.4 79 169-256 35-113 (121)
362 1jmt_A Splicing factor U2AF 35 99.4 3.3E-14 1.1E-18 106.1 3.3 67 280-346 20-103 (104)
363 2pe8_A Splicing factor 45; RRM 99.4 5E-13 1.7E-17 99.7 9.7 84 170-254 5-94 (105)
364 2voo_A Lupus LA protein; RNA-b 99.4 3E-13 1E-17 113.1 9.0 121 132-255 63-188 (193)
365 1owx_A Lupus LA protein, SS-B, 99.4 1.9E-12 6.6E-17 97.5 9.9 77 271-347 14-94 (121)
366 3u1l_A PRE-mRNA-splicing facto 99.4 1.3E-12 4.3E-17 111.6 9.4 81 169-256 130-231 (240)
367 2dit_A HIV TAT specific factor 99.3 1.3E-11 4.6E-16 93.5 11.7 84 168-256 10-104 (112)
368 3v4m_A Splicing factor U2AF 65 99.3 2.5E-12 8.6E-17 95.9 6.7 78 80-157 4-93 (105)
369 2dnr_A Synaptojanin-1; RRM dom 99.3 7.2E-12 2.5E-16 88.0 8.5 73 273-348 5-85 (91)
370 1jmt_A Splicing factor U2AF 35 99.3 1.5E-12 5.1E-17 97.0 3.1 70 86-156 20-101 (104)
371 3ue2_A Poly(U)-binding-splicin 99.3 1.4E-11 4.7E-16 93.7 7.7 82 172-254 19-109 (118)
372 2d9o_A DNAJ (HSP40) homolog, s 99.2 1E-10 3.5E-15 85.9 12.1 76 79-163 8-90 (100)
373 3tht_A Alkylated DNA repair pr 99.2 1.3E-11 4.4E-16 111.2 6.9 77 78-160 15-96 (345)
374 1ufw_A Synaptojanin 2; RNP dom 99.2 7.5E-11 2.6E-15 83.2 7.0 74 271-347 11-93 (95)
375 3s6e_A RNA-binding protein 39; 99.0 7.4E-10 2.5E-14 83.4 8.2 79 171-254 5-93 (114)
376 2l9w_A U4/U6 snRNA-associated- 99.0 1.3E-09 4.4E-14 78.2 8.2 72 274-345 20-96 (117)
377 1owx_A Lupus LA protein, SS-B, 98.9 3.4E-09 1.1E-13 79.8 8.5 73 79-157 16-90 (121)
378 3dxb_A Thioredoxin N-terminall 98.9 2.4E-09 8.2E-14 91.8 7.7 61 287-347 141-211 (222)
379 2dnr_A Synaptojanin-1; RRM dom 98.7 2E-08 6.8E-13 70.6 5.9 72 172-253 6-85 (91)
380 1ufw_A Synaptojanin 2; RNP dom 98.6 6.3E-08 2.1E-12 68.3 5.1 73 170-252 12-93 (95)
381 3dxb_A Thioredoxin N-terminall 98.6 1.2E-07 4E-12 81.2 7.8 69 185-254 141-213 (222)
382 1wey_A Calcipressin 1; structu 98.4 6.9E-07 2.4E-11 64.2 7.5 76 274-349 4-84 (104)
383 2dhx_A Poly (ADP-ribose) polym 98.3 8.7E-06 3E-10 58.1 10.9 73 274-349 7-84 (104)
384 2l9w_A U4/U6 snRNA-associated- 98.3 5.4E-06 1.8E-10 59.6 8.5 72 171-249 19-95 (117)
385 1wwh_A Nucleoporin 35, nucleop 98.0 1.5E-05 5.2E-10 59.0 7.4 73 273-347 22-95 (119)
386 2dhx_A Poly (ADP-ribose) polym 97.9 0.00016 5.4E-09 51.7 9.8 90 171-288 6-99 (104)
387 1uw4_A UPF3X; nonsense mediate 97.8 7E-05 2.4E-09 52.9 6.7 69 82-150 2-72 (91)
388 3p3d_A Nucleoporin 53; structu 97.5 4.9E-05 1.7E-09 57.0 3.2 71 275-347 7-97 (132)
389 1uw4_A UPF3X; nonsense mediate 97.4 0.00055 1.9E-08 48.4 7.5 72 276-347 2-86 (91)
390 1whv_A Poly(A)-specific ribonu 97.4 0.00093 3.2E-08 47.1 8.3 56 274-332 15-70 (100)
391 1wey_A Calcipressin 1; structu 97.3 0.00033 1.1E-08 50.3 5.4 70 81-156 5-79 (104)
392 1whv_A Poly(A)-specific ribonu 97.3 0.00083 2.8E-08 47.3 6.6 56 80-144 15-70 (100)
393 2l08_A Regulator of nonsense t 97.2 0.00039 1.3E-08 49.3 4.5 71 80-150 8-80 (97)
394 3ctr_A Poly(A)-specific ribonu 97.1 0.001 3.4E-08 47.1 6.0 54 276-332 7-60 (101)
395 3ctr_A Poly(A)-specific ribonu 97.1 0.00099 3.4E-08 47.1 5.5 53 83-144 8-60 (101)
396 2l08_A Regulator of nonsense t 96.9 0.0023 7.9E-08 45.4 6.1 74 274-347 8-94 (97)
397 3pq1_A Poly(A) RNA polymerase; 96.8 0.00057 2E-08 63.7 3.3 55 275-330 53-108 (464)
398 1wwh_A Nucleoporin 35, nucleop 96.6 0.0057 1.9E-07 45.2 6.4 63 79-149 22-84 (119)
399 3pq1_A Poly(A) RNA polymerase; 95.8 0.0039 1.3E-07 58.2 2.9 57 80-142 52-108 (464)
400 3p3d_A Nucleoporin 53; structu 92.0 0.3 1E-05 36.6 5.5 77 173-252 7-97 (132)
401 3d45_A Poly(A)-specific ribonu 87.6 1.9 6.4E-05 41.0 8.6 56 274-332 439-494 (507)
402 3d45_A Poly(A)-specific ribonu 87.5 1.4 4.6E-05 42.0 7.5 56 81-145 440-495 (507)
403 4eyt_A Telomerase associated p 78.5 13 0.00045 25.3 7.9 57 274-332 11-67 (129)
404 2g0c_A ATP-dependent RNA helic 72.3 12 0.00042 24.7 6.2 58 287-347 13-75 (76)
405 3fry_A Probable copper-exporti 68.5 12 0.0004 24.3 5.4 55 275-330 6-60 (73)
406 4eyt_A Telomerase associated p 65.8 29 0.00098 23.6 7.0 57 79-143 10-66 (129)
407 4a4j_A Pacszia, cation-transpo 57.4 22 0.00075 22.3 5.1 55 276-330 4-61 (69)
408 3dxs_X Copper-transporting ATP 54.9 31 0.001 22.0 5.6 55 276-330 4-62 (74)
409 2v94_A RPS24, 30S ribosomal pr 49.1 21 0.0007 25.7 4.0 49 183-232 37-89 (107)
410 1yg0_A COP associated protein; 48.6 43 0.0015 20.3 6.0 54 277-330 4-60 (66)
411 1xn9_A 30S ribosomal protein S 47.6 19 0.00064 25.6 3.5 49 183-232 28-80 (101)
412 2kt2_A Mercuric reductase; nme 42.9 56 0.0019 20.0 5.4 54 277-330 3-59 (69)
413 2xmw_A PACS-N, cation-transpor 42.5 57 0.002 20.0 6.3 54 277-330 6-62 (71)
414 1ywx_A 30S ribosomal protein S 42.4 19 0.00065 25.6 2.9 48 183-231 28-79 (102)
415 2g1d_A 30S ribosomal protein S 41.9 19 0.00064 25.4 2.8 46 183-229 29-78 (98)
416 3j21_T 50S ribosomal protein L 40.2 86 0.003 21.4 5.9 51 280-330 27-82 (86)
417 2xzm_P RPS24E; ribosome, trans 40.2 42 0.0014 25.5 4.6 49 183-232 31-83 (149)
418 2l3m_A Copper-ION-binding prot 40.2 64 0.0022 19.9 6.0 55 276-330 7-65 (71)
419 1cpz_A Protein (COPZ); copper 40.0 61 0.0021 19.6 7.4 54 277-330 3-60 (68)
420 1q8l_A Copper-transporting ATP 39.6 77 0.0026 20.6 7.4 55 276-330 11-69 (84)
421 1osd_A MERP, hypothetical prot 38.4 69 0.0024 19.7 6.8 54 277-330 6-63 (72)
422 2g9o_A Copper-transporting ATP 37.9 68 0.0023 21.5 5.4 56 276-331 5-64 (90)
423 3u5c_Y RP50, 40S ribosomal pro 36.6 43 0.0015 25.1 4.1 48 183-231 33-84 (135)
424 2e7g_A Putative ribosome-bindi 35.7 69 0.0024 23.7 5.3 34 299-332 43-79 (129)
425 3lpe_A Putative transcription 35.0 91 0.0031 21.4 5.5 34 301-334 39-73 (92)
426 2ofg_X Zinc-transporting ATPas 34.6 1.2E+02 0.0041 21.3 7.4 55 276-330 10-68 (111)
427 4e8u_A Putative uncharacterize 34.5 1.2E+02 0.0041 23.8 6.6 53 277-329 14-81 (172)
428 3ts2_A Protein LIN-28 homolog 34.1 11 0.00037 29.0 0.6 28 290-319 2-29 (148)
429 1y3j_A Copper-transporting ATP 34.0 83 0.0028 19.9 5.2 55 277-331 6-64 (77)
430 1fvq_A Copper-transporting ATP 33.8 83 0.0028 19.3 5.5 55 277-331 5-62 (72)
431 1kvi_A Copper-transporting ATP 33.7 91 0.0031 19.7 6.1 57 275-331 9-69 (79)
432 3cjk_B Copper-transporting ATP 31.3 97 0.0033 19.3 6.3 54 277-330 5-62 (75)
433 2i9x_A Putative septation prot 30.8 59 0.002 22.3 3.8 26 107-132 5-30 (87)
434 1aw0_A Menkes copper-transport 30.8 63 0.0022 19.9 4.0 55 277-331 6-64 (72)
435 1p6t_A Potential copper-transp 29.3 1.6E+02 0.0054 21.7 6.7 119 175-331 9-135 (151)
436 1yjr_A Copper-transporting ATP 28.8 1.1E+02 0.0036 19.0 7.6 45 276-320 6-50 (75)
437 2qif_A Copper chaperone COPZ; 28.5 97 0.0033 18.4 6.3 54 277-330 5-62 (69)
438 1mwy_A ZNTA; open-faced beta-s 28.4 1.1E+02 0.0037 19.0 7.7 54 277-330 6-61 (73)
439 2ia9_A Putative septation prot 27.8 68 0.0023 22.6 3.8 26 107-132 5-30 (100)
440 2pk2_A Cyclin-T1, protein TAT; 27.3 13 0.00045 33.4 0.0 14 285-298 227-240 (358)
441 2e5p_A Protein PHF1, PHD finge 27.2 51 0.0017 21.1 2.7 21 300-322 28-48 (68)
442 2cu1_A Mitogen-activated prote 27.0 1.6E+02 0.0056 20.6 5.7 68 280-350 21-89 (103)
443 4hhu_A OR280; engineered prote 27.0 1.5E+02 0.0051 21.3 5.4 69 276-346 43-129 (170)
444 2i9z_A Putative septation prot 26.3 77 0.0026 22.6 3.8 26 107-132 5-30 (105)
445 3d53_A Inorganic pyrophosphata 26.3 51 0.0017 26.0 3.2 40 288-332 131-170 (173)
446 1opz_A Potential copper-transp 25.3 1.2E+02 0.0042 18.6 7.0 55 276-330 8-66 (76)
447 1vq8_S 50S ribosomal protein L 23.9 1.3E+02 0.0045 20.4 4.6 51 279-329 25-80 (85)
448 2ldi_A Zinc-transporting ATPas 23.6 1.3E+02 0.0043 18.1 6.7 54 277-330 6-63 (71)
449 3iwl_A Copper transport protei 23.2 1.4E+02 0.0047 18.4 5.0 52 277-330 5-57 (68)
450 1qez_A Ppase, S-ppase, protein 23.2 62 0.0021 25.5 3.2 40 288-332 127-166 (173)
451 2xk0_A Polycomb protein PCL; t 23.0 34 0.0012 22.1 1.3 14 309-322 39-52 (69)
452 2eqj_A Metal-response element- 23.0 67 0.0023 20.6 2.7 20 300-321 32-51 (66)
453 2m0o_A PHD finger protein 1; t 22.9 66 0.0023 21.2 2.7 21 300-322 45-65 (79)
454 4bby_A Alkyldihydroxyacetoneph 22.8 74 0.0025 31.2 4.4 48 286-333 354-410 (658)
455 2crl_A Copper chaperone for su 21.8 1.5E+02 0.0052 20.2 4.9 53 277-330 22-75 (98)
456 2cpq_A FragIle X mental retard 21.8 2E+02 0.0069 19.8 6.5 43 292-335 37-79 (91)
457 2kzf_A RBFA, ribosome-binding 21.4 1.7E+02 0.0057 20.7 5.0 33 300-332 36-71 (106)
458 3h7h_B Transcription elongatio 21.3 76 0.0026 22.6 3.1 35 301-335 40-75 (106)
459 2kyz_A Heavy metal binding pro 20.8 60 0.002 19.9 2.3 52 278-330 5-56 (67)
460 3u5e_X 60S ribosomal protein L 20.5 1.8E+02 0.0062 21.9 5.1 51 280-330 83-138 (142)
461 2prd_A Pyrophosphate phosphohy 20.3 65 0.0022 25.4 2.8 42 288-332 128-169 (174)
462 1nxk_A MAP kinase-activated pr 20.2 25 0.00085 32.0 0.4 9 185-193 158-166 (400)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.4e-45 Score=332.51 Aligned_cols=241 Identities=18% Similarity=0.274 Sum_probs=217.0
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
..+++|||+|||.++|+++|+++|+.|| |.+|.+ ++++|||||+|.+.++|.+|++.|++..+.++.+ ++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i--~v~ 90 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLREREL--SVQ 90 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEEC--EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEE--EEE
Confidence 3578999999999999999999999999 999987 4566999999999999999999999999876544 444
Q ss_pred ecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcC
Q 015450 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (406)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 238 (406)
+. ....+|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.+++
T Consensus 91 ~~----------~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~ 159 (284)
T 3smz_A 91 LQ----------PTDALLCVANLPPSLTQQQFEELV-RPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 159 (284)
T ss_dssp EC----------CCSCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ec----------CCCCEEEEcCCCCcCCHHHHHHHH-HhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 42 245799999999999999999999 8999999999999998999999999999999999999999999
Q ss_pred ccccCcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCC-CHHHHHHHhccCCcEEEEEeeCC-----Ce
Q 015450 239 VFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIV-TDEHLRELFSQYGQLVHVKIPAG-----KR 312 (406)
Q Consensus 239 ~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~-t~e~l~~~F~~~G~i~~v~i~~~-----~g 312 (406)
..+.|+.|.|.++...... ......++|||+|||.++ ++++|+++|+.||.|.+|.|.++ +|
T Consensus 160 ~~~~g~~i~v~~a~~~~~~------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g 227 (284)
T 3smz_A 160 KPLGPRTLYVHWTDAGQLT------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKG 227 (284)
T ss_dssp CEETTEECEEEECCGGGCC------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEE
T ss_pred CEeCCcEEEEEECCCCCCC------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCccc
Confidence 9999999999998765432 233467899999999995 99999999999999999999775 78
Q ss_pred EEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCC
Q 015450 313 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351 (406)
Q Consensus 313 ~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 351 (406)
+|||+|.+.++|.+|+..|||..|+|+.|+|+|+++...
T Consensus 228 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 228 FAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp EEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 999999999999999999999999999999999987654
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.3e-44 Score=327.65 Aligned_cols=248 Identities=17% Similarity=0.324 Sum_probs=207.1
Q ss_pred CCCCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcc
Q 015450 75 QGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (406)
Q Consensus 75 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~ 154 (406)
.......++|||+|||.++|+++|+++|+.||.|.+|+++++.. .++|||||+|.+.++|.+|++ +++..+.++.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~-- 109 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAIT-KTHKVVGQNE-- 109 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--SSSEEEEEEESSHHHHHHHHT-TTTCEETTEE--
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEEECCHHHHHHHHH-hCCcEeCCcE--
Confidence 34556789999999999999999999999999999999999864 357999999999999999995 8999886654
Q ss_pred eeeeecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCC-CcceeEEEecCCCCCCcceEEEEecCHHHHHHHH
Q 015450 155 FRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (406)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 233 (406)
+++.++ ..++|||+|||.++++++|+++| +.|| .|..+.++.+.. +.++|||||+|.+.++|.+|+
T Consensus 110 i~v~~~-----------~~~~l~v~nlp~~~t~~~l~~~f-~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~ 176 (292)
T 2ghp_A 110 IIVSHL-----------TECTLWMTNFPPSYTQRNIRDLL-QDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCV 176 (292)
T ss_dssp CEEEEC-----------CSCEEEEECCCTTCCHHHHHHHH-HHTTCCCCEEECC--------CCEEEEECSSHHHHHHHH
T ss_pred EEEEEC-----------CCCEEEEECCCCCCCHHHHHHHH-HHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHH
Confidence 444433 36799999999999999999999 8999 999999988874 788999999999999999999
Q ss_pred HHhcCccccCcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCC-CCHHHHHHHhccCCcEEEEEeeCC--
Q 015450 234 TEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSI-VTDEHLRELFSQYGQLVHVKIPAG-- 310 (406)
Q Consensus 234 ~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~e~l~~~F~~~G~i~~v~i~~~-- 310 (406)
..|++..+.|+.|.|.++......... .......++|||+||+.+ +++++|+++|+.||.|.+|.|.++
T Consensus 177 ~~l~g~~~~g~~l~v~~a~~~~~~~~~--------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~ 248 (292)
T 2ghp_A 177 EKLNGLKIEGYTLVTKVSNPLEKSKRT--------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK 248 (292)
T ss_dssp HHHTTCEETTEECEEEECCCC-----------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC
T ss_pred HHhCCCEeCCcEEEEEECCCCcccccc--------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCC
Confidence 999999999999999998865443211 123456789999999999 999999999999999999999653
Q ss_pred -----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCC
Q 015450 311 -----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349 (406)
Q Consensus 311 -----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 349 (406)
+|+|||+|.+.++|.+|+ .|||..|+|+.|+|.|++++
T Consensus 249 ~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 249 EHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp ---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred cCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 689999999999999999 99999999999999999865
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.7e-35 Score=253.24 Aligned_cols=167 Identities=29% Similarity=0.480 Sum_probs=150.9
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
..+.++|||+|||+++++++|+++| +.||.|.+|+++.+..+++++|||||+|.+.++|.+|++.+++..+.|+.+++.
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKF-SPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 4466899999999999999999999 899999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC----CeEEEEEeCChHHHH
Q 015450 250 PATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG----KRCGFVQFADRSCAE 325 (406)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~----~g~afV~F~~~~~A~ 325 (406)
++........ ...++|||+||+.++++++|+++|+.||.|++|+|.++ +|+|||+|.+.++|.
T Consensus 91 ~~~~~~~~~~-------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~ 157 (213)
T 4f02_A 91 WSQRDPSLRK-------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAE 157 (213)
T ss_dssp ECCCCTHHHH-------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHH
T ss_pred cccccccccc-------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHH
Confidence 8775543221 13568999999999999999999999999999999754 789999999999999
Q ss_pred HHHHHhcCCccCCcEEEEeeccCCC
Q 015450 326 EALRMLNGTQLGGQNIRLSWGRSPS 350 (406)
Q Consensus 326 ~A~~~l~g~~~~g~~l~v~~~~~~~ 350 (406)
+|++.|||..|+|+.|+|+|++++.
T Consensus 158 ~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 158 RAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp HHHHHHTTCEETTEECEEEECCCHH
T ss_pred HHHHHhCCCEECCEEEEEEEcCCCc
Confidence 9999999999999999999998654
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.2e-32 Score=234.26 Aligned_cols=173 Identities=22% Similarity=0.375 Sum_probs=146.5
Q ss_pred CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
.....++|||+|||+++++++|+++| +.||.|.++.++.+..+++++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHF-EQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 34567899999999999999999999 8999999999999998999999999999999999999975 889999999999
Q ss_pred cccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChH
Q 015450 249 GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRS 322 (406)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~ 322 (406)
.++........ .......++|||+||+.++++++|+++|+.||.|++|.|..+ +|+|||+|.+.+
T Consensus 87 ~~~~~~~~~~~---------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 157 (196)
T 1l3k_A 87 KRAVSREDSQR---------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157 (196)
T ss_dssp EECCC--------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred ecccCcccccc---------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHH
Confidence 99876543221 223345689999999999999999999999999999999754 689999999999
Q ss_pred HHHHHHHHhcCCccCCcEEEEeeccCCCCCC
Q 015450 323 CAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353 (406)
Q Consensus 323 ~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 353 (406)
+|.+|+.. ++..|+|+.|+|+|+.++....
T Consensus 158 ~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 158 SVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp HHHHHHHC-SCCEETTEECEEEECC------
T ss_pred HHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 99999996 8999999999999999776644
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4.1e-33 Score=239.65 Aligned_cols=171 Identities=28% Similarity=0.497 Sum_probs=149.7
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 159 (406)
..++|||+|||.++|+++|+++|++||.|++|+|++++.+++++|||||+|.+.++|.+|++.+++..+.++. +++.+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~--i~~~~ 91 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP--VRIMW 91 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE--CEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc--ccccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999986654 44444
Q ss_pred cccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCc
Q 015450 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (406)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 239 (406)
+..... .......+|||+||++++++++|+++| +.||.|..++++.+. +.++|||||+|.+.++|.+|++.||+.
T Consensus 92 ~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~F-~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~ 166 (213)
T 4f02_A 92 SQRDPS--LRKSGVGNIFIKNLDKSIDNKALYDTF-SAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM 166 (213)
T ss_dssp CCCCTH--HHHHCTTEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cccccc--ccccccccceECCcccccHHHHHHHHH-hhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 432211 112345689999999999999999999 899999999999885 447999999999999999999999999
Q ss_pred cccCcceEecccCCCCcc
Q 015450 240 FCSTRPMRIGPATNKKTV 257 (406)
Q Consensus 240 ~~~g~~i~v~~~~~~~~~ 257 (406)
.++|+.|.|.++..+...
T Consensus 167 ~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 167 LLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp EETTEECEEEECCCHHHH
T ss_pred EECCEEEEEEEcCCCccc
Confidence 999999999999876443
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.8e-32 Score=236.80 Aligned_cols=178 Identities=19% Similarity=0.411 Sum_probs=152.5
Q ss_pred CCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEeccc
Q 015450 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (406)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~ 251 (406)
..++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAF-APFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHH-GGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHH-HhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 35699999999999999999999 89999999999999889999999999999999999999999999999999999887
Q ss_pred CCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHH
Q 015450 252 TNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAE 325 (406)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~ 325 (406)
........... .........++|||+||+.++++++|+++|+.||.|++|.|.++ +|+|||+|.+.++|.
T Consensus 106 ~~~~~~~~~~~----~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 106 SNIGQAQPIID----QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp SCCGGGHHHHH----HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCccccchhhh----hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 76543211100 00112235689999999999999999999999999999999765 789999999999999
Q ss_pred HHHHHhcCCccCCcEEEEeeccCCCCCCC
Q 015450 326 EALRMLNGTQLGGQNIRLSWGRSPSNKQA 354 (406)
Q Consensus 326 ~A~~~l~g~~~~g~~l~v~~~~~~~~~~~ 354 (406)
+|+..|||..|+|+.|+|.|++.+.....
T Consensus 182 ~A~~~l~g~~~~g~~i~V~~a~~~~~~~~ 210 (216)
T 2qfj_A 182 DAVSSMNLFDLGGQYLRVGKAVTPPMPLL 210 (216)
T ss_dssp HHHHHHTTCBCSSSBCEEEECSSCSSTTS
T ss_pred HHHHHccCCEeCCcEEEEEEecCCCCCCC
Confidence 99999999999999999999997765443
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.9e-32 Score=225.10 Aligned_cols=159 Identities=27% Similarity=0.467 Sum_probs=147.7
Q ss_pred CCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEeccc
Q 015450 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (406)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~ 251 (406)
++++|||+|||.++++++|+++| +.||.|.++.++.+..+++++|||||+|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALF-RAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHH-HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 46799999999999999999999 89999999999999889999999999999999999999999999999999999998
Q ss_pred CCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHH
Q 015450 252 TNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAE 325 (406)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~ 325 (406)
..... ....++|||+||+.++++++|+++|+.||.|.++.+.++ +|+|||+|.+.++|.
T Consensus 81 ~~~~~---------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 81 RPGGE---------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 145 (168)
T ss_dssp CCCSS---------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCCcc---------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 76432 234689999999999999999999999999999999765 489999999999999
Q ss_pred HHHHHhcCCccCC--cEEEEeec
Q 015450 326 EALRMLNGTQLGG--QNIRLSWG 346 (406)
Q Consensus 326 ~A~~~l~g~~~~g--~~l~v~~~ 346 (406)
+|+..|||..|+| +.|+|+||
T Consensus 146 ~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 146 EAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999987 99999986
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2.3e-32 Score=232.37 Aligned_cols=180 Identities=18% Similarity=0.363 Sum_probs=148.8
Q ss_pred CCCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcce
Q 015450 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (406)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~ 155 (406)
..+...++|||+|||.++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++. ++..+.++.+.+
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3456789999999999999999999999999999999999999999999999999999999999986 777786655544
Q ss_pred eeeecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHH
Q 015450 156 RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (406)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 235 (406)
..................++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 87 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF-EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EECCC-----------CCSEEEEECCTTTCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred ecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHH-hcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 443322222222334456899999999999999999999 8999999999999988999999999999999999999975
Q ss_pred hcCccccCcceEecccCCCCccc
Q 015450 236 MNGVFCSTRPMRIGPATNKKTVS 258 (406)
Q Consensus 236 ~~~~~~~g~~i~v~~~~~~~~~~ 258 (406)
++..++|+.|.|.++..+....
T Consensus 166 -~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp -SCCEETTEECEEEECC------
T ss_pred -CCcEECCEEEEEEecCChhHhc
Confidence 7999999999999998876653
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=6.6e-32 Score=223.43 Aligned_cols=158 Identities=28% Similarity=0.538 Sum_probs=146.0
Q ss_pred CceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccC
Q 015450 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (406)
Q Consensus 173 ~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~ 252 (406)
+++|||+|||.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.+++..+.|+.|.|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f-~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLF-GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 5799999999999999999999 899999999999999899999999999999999999999999999999999999887
Q ss_pred CCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHH
Q 015450 253 NKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEE 326 (406)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~ 326 (406)
..... ...++|||+||+.++++++|+++|+.||.|.++.+..+ +|+|||+|.+.++|.+
T Consensus 81 ~~~~~---------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 81 PSSAS---------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp CCCGG---------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCccc---------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHH
Confidence 54332 24678999999999999999999999999999998654 6899999999999999
Q ss_pred HHHHhcCCccCCcE--EEEeec
Q 015450 327 ALRMLNGTQLGGQN--IRLSWG 346 (406)
Q Consensus 327 A~~~l~g~~~~g~~--l~v~~~ 346 (406)
|++.|||..|+|+. |+|+||
T Consensus 146 A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 146 AIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCccCCCccceEEEeC
Confidence 99999999999975 888885
No 10
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-32 Score=223.92 Aligned_cols=159 Identities=24% Similarity=0.483 Sum_probs=146.1
Q ss_pred ceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCC
Q 015450 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (406)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~ 253 (406)
++|||+|||.++++++|+++| +.||.|.++.++.+. +++++|||||+|.+.++|.+|++.+++..+.|+.+.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f-~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYF-QVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHH-GGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHH-HhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 589999999999999999999 899999999999887 577999999999999999999999999999999999999876
Q ss_pred CCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHH
Q 015450 254 KKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEA 327 (406)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A 327 (406)
... ......++|||+||+.++++++|+++|+.||.|.++.+..+ +|+|||+|.+.++|.+|
T Consensus 79 ~~~-------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A 145 (166)
T 3md3_A 79 SQQ-------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNA 145 (166)
T ss_dssp CCC-------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH
T ss_pred CCC-------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 543 23345789999999999999999999999999999999754 68999999999999999
Q ss_pred HHHhcCCccCCcEEEEeecc
Q 015450 328 LRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 328 ~~~l~g~~~~g~~l~v~~~~ 347 (406)
+..|||..|+|+.|+|+|++
T Consensus 146 ~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 146 MDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHTTCEETTEECEEEESC
T ss_pred HHHhCCCccCCcEEEEEecC
Confidence 99999999999999999986
No 11
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.98 E-value=1.6e-31 Score=221.39 Aligned_cols=165 Identities=27% Similarity=0.506 Sum_probs=150.0
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 159 (406)
..++|||+|||.++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.+++..+.++ .+++.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~--~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK--RLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCc--EEEEEe
Confidence 468999999999999999999999999999999999988999999999999999999999999999999654 455555
Q ss_pred cccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCc
Q 015450 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (406)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 239 (406)
+... ......++|||+||+.++++++|+++| +.||.|..+.+..+..+++++|+|||+|.+.++|.+|++.|++.
T Consensus 80 ~~~~----~~~~~~~~l~v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 154 (168)
T 1b7f_A 80 ARPG----GESIKDTNLYVTNLPRTITDDQLDTIF-GKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 154 (168)
T ss_dssp CCCC----SSTTTTCEEEEESCCTTCCHHHHHHHH-TSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cCCC----cccCCCCCEEEeCCCCCCCHHHHHHhh-hcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 5433 234567899999999999999999999 89999999999999889999999999999999999999999999
Q ss_pred cccC--cceEeccc
Q 015450 240 FCST--RPMRIGPA 251 (406)
Q Consensus 240 ~~~g--~~i~v~~~ 251 (406)
.+.| +.|+|.++
T Consensus 155 ~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 155 IPEGGSQPLSVRLA 168 (168)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred EecCCCeEEEEEeC
Confidence 9987 99999875
No 12
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.98 E-value=2e-31 Score=220.58 Aligned_cols=164 Identities=27% Similarity=0.489 Sum_probs=147.6
Q ss_pred cceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeec
Q 015450 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (406)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~ 160 (406)
+++|||+|||.++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.+++..+.++. +++.++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~--l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT--IKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE--CEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce--EEEEec
Confidence 689999999999999999999999999999999999989999999999999999999999999999996654 444544
Q ss_pred ccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCcc
Q 015450 161 SFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (406)
Q Consensus 161 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 240 (406)
... .......+|||+||+.++++++|+++| +.||.|..+.+..+..+++++|+|||+|.+.++|.+|++.|++..
T Consensus 80 ~~~----~~~~~~~~l~v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 80 RPS----SASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp CCC----CGGGTTCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCC----cccCCCCcEEECCCCCcCCHHHHHHHH-HhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 432 223456789999999999999999999 899999999999998899999999999999999999999999999
Q ss_pred ccCcc--eEeccc
Q 015450 241 CSTRP--MRIGPA 251 (406)
Q Consensus 241 ~~g~~--i~v~~~ 251 (406)
+.|+. |+|.||
T Consensus 155 ~~g~~~~i~v~~A 167 (167)
T 1fxl_A 155 PSGATEPITVKFA 167 (167)
T ss_dssp CTTCSSCCEEEEC
T ss_pred cCCCccceEEEeC
Confidence 99976 777664
No 13
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.6e-31 Score=220.84 Aligned_cols=165 Identities=32% Similarity=0.576 Sum_probs=148.5
Q ss_pred ceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeecc
Q 015450 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (406)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~ 161 (406)
++|||+|||.++|+++|+++|++||.|.+|+++.++ +++++|||||+|.+.++|.+|++.+++..+.++. +++.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~--i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNI--VKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEE--CEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCe--eEEEEcC
Confidence 689999999999999999999999999999999997 5889999999999999999999999999996654 4455443
Q ss_pred cCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccc
Q 015450 162 FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (406)
Q Consensus 162 ~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~ 241 (406)
... ........+|||+||+.++++++|+++| +.||.|..+.++.+..++.++|+|||+|.+.++|.+|++.|++..+
T Consensus 78 ~~~--~~~~~~~~~l~v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 154 (166)
T 3md3_A 78 QSQ--QSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 154 (166)
T ss_dssp CCC--CCCCTTCEEEEEESCCTTCCHHHHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCC--CCCCCCCceEEECCCCCCCCHHHHHHHH-hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 322 2345567899999999999999999999 8999999999999988999999999999999999999999999999
Q ss_pred cCcceEecccC
Q 015450 242 STRPMRIGPAT 252 (406)
Q Consensus 242 ~g~~i~v~~~~ 252 (406)
+|+.|+|.++.
T Consensus 155 ~g~~i~v~~a~ 165 (166)
T 3md3_A 155 NGRPLRINWAA 165 (166)
T ss_dssp TTEECEEEESC
T ss_pred CCcEEEEEecC
Confidence 99999999875
No 14
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=3.4e-31 Score=220.92 Aligned_cols=161 Identities=24% Similarity=0.482 Sum_probs=143.0
Q ss_pred CCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCC--CCcceEEEEecCHHHHHHHHHHhcCcccc---Ccce
Q 015450 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTG--RTKGYGFVRFGDESEQLRAMTEMNGVFCS---TRPM 246 (406)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~~~~~~~~---g~~i 246 (406)
.+++|||+|||+++++++|+++| +.||.|.++.++.+..++ +++|||||+|.+.++|.+|++.+++..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELF-EQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 46799999999999999999999 899999999999998776 89999999999999999999999998775 5667
Q ss_pred EecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCCh
Q 015450 247 RIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADR 321 (406)
Q Consensus 247 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~ 321 (406)
.+.++..... .....++|||+||+.++++++|+++|+.||.|+++.+.++ +|+|||+|.+.
T Consensus 81 ~~~~~~~~~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~ 146 (175)
T 3nmr_A 81 QMKPADSEKN--------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTR 146 (175)
T ss_dssp EEEECGGGCC--------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred EEcccccccc--------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCH
Confidence 7766554332 2235688999999999999999999999999999999765 78999999999
Q ss_pred HHHHHHHHHhcCCccC---CcEEEEeecc
Q 015450 322 SCAEEALRMLNGTQLG---GQNIRLSWGR 347 (406)
Q Consensus 322 ~~A~~A~~~l~g~~~~---g~~l~v~~~~ 347 (406)
++|.+|+..|||..+. ++.|+|+||.
T Consensus 147 ~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 147 AMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999999998875 4999999973
No 15
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=6.8e-31 Score=219.08 Aligned_cols=168 Identities=18% Similarity=0.342 Sum_probs=149.0
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCC--CccceEEEEEccHHHHHHHHHHcCCCCCC-CCCccee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTG--QIEGYGFIEFISRAGAERVLQTFNGTPMP-NGEQNFR 156 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~--~~~g~a~V~f~~~~~a~~a~~~l~~~~~~-~~~~~~~ 156 (406)
++++|||+|||.++|+++|+++|++||.|.+|++++++.++ +++|||||+|.+.++|.+|++.+++..+. +..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998876 89999999999999999999999997764 4466666
Q ss_pred eeecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHh
Q 015450 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (406)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 236 (406)
+.++.... ......++|||+||+.++++++|+++| +.||.|..+.++.+. +++++|||||+|.+.++|.+|++.|
T Consensus 82 ~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~F-~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 3nmr_A 82 MKPADSEK---NNAVEDRKLFIGMISKKCTENDIRVMF-SSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAM 156 (175)
T ss_dssp EEECGGGC---CSCGGGSEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred Eccccccc---cccCCCCeEEEcCCCCcCCHHHHHHHH-HhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHh
Confidence 66655332 224467899999999999999999999 899999999999986 6899999999999999999999999
Q ss_pred cCcccc---CcceEecccC
Q 015450 237 NGVFCS---TRPMRIGPAT 252 (406)
Q Consensus 237 ~~~~~~---g~~i~v~~~~ 252 (406)
|+..+. ++.|.|.++.
T Consensus 157 ~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 157 HQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TTSCCCTTCSSCCEEEECC
T ss_pred cCCcccCCCCCCeEEEecC
Confidence 998776 4999998874
No 16
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=1.8e-31 Score=230.52 Aligned_cols=175 Identities=20% Similarity=0.360 Sum_probs=152.4
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
...++|||+|||.++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+.++.+.+ .
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v--~ 103 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV--G 103 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE--E
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE--e
Confidence 45789999999999999999999999999999999999889999999999999999999999999999997665444 4
Q ss_pred ecccCCCC-------CCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHH
Q 015450 159 WASFGAGE-------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231 (406)
Q Consensus 159 ~~~~~~~~-------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ 231 (406)
++...... .......++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVF-EAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHH-TTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHH-hccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 43322110 0123456899999999999999999999 899999999999998899999999999999999999
Q ss_pred HHHHhcCccccCcceEecccCCCCc
Q 015450 232 AMTEMNGVFCSTRPMRIGPATNKKT 256 (406)
Q Consensus 232 a~~~~~~~~~~g~~i~v~~~~~~~~ 256 (406)
|++.|++..++|+.|+|.++.....
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHHHccCCEeCCcEEEEEEecCCCC
Confidence 9999999999999999999887644
No 17
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=5.1e-31 Score=237.08 Aligned_cols=175 Identities=23% Similarity=0.429 Sum_probs=149.0
Q ss_pred CCCCCceEEEcCCCccccHHHHH----HHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCc
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQ----ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~----~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~ 244 (406)
+..++++|||+||++++++++|+ ++| +.||.|.+|+++. +++++|||||+|.+.++|.+|++.|++..+.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F-~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHH-hccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 35668899999999999999976 899 8999999988775 678899999999999999999999999999999
Q ss_pred ceEecccCCCCcccccccCC------------------------------------------------------------
Q 015450 245 PMRIGPATNKKTVSASYQNS------------------------------------------------------------ 264 (406)
Q Consensus 245 ~i~v~~~~~~~~~~~~~~~~------------------------------------------------------------ 264 (406)
.|+|.++.............
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 99999987654310000000
Q ss_pred ------------------------------------ccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEee
Q 015450 265 ------------------------------------QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 308 (406)
Q Consensus 265 ------------------------------------~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~ 308 (406)
..........+++|||+||+.++++++|+++|+.||.|++|+|.
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 00001233467899999999999999999999999999999999
Q ss_pred CCC-eEEEEEeCChHHHHHHHHHhcCCccC-CcEEEEeecc
Q 015450 309 AGK-RCGFVQFADRSCAEEALRMLNGTQLG-GQNIRLSWGR 347 (406)
Q Consensus 309 ~~~-g~afV~F~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~ 347 (406)
+++ |+|||+|.+.++|.+|+..|||..|+ |+.|+|+|++
T Consensus 241 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 886 99999999999999999999999999 9999999987
No 18
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=7.8e-32 Score=223.03 Aligned_cols=159 Identities=21% Similarity=0.406 Sum_probs=144.4
Q ss_pred CCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEeccc
Q 015450 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (406)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~ 251 (406)
++++|||+|||.++++++|+++| +.||.|.++.++.+..+++++|||||+|.+.++|.+|++. +..+.|+.|.+.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYF-GKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHH-TTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 35799999999999999999999 8999999999999988999999999999999999999984 67889999999887
Q ss_pred CCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHH
Q 015450 252 TNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAE 325 (406)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~ 325 (406)
...... ...++|||+||+.++++++|+++|+.||.|.++.+..+ +|+|||+|.+.++|.
T Consensus 79 ~~~~~~---------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 143 (167)
T 2cjk_A 79 IPRDEQ---------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 143 (167)
T ss_dssp CCHHHH---------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHH
T ss_pred cchhhc---------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 654322 13578999999999999999999999999999999765 589999999999999
Q ss_pred HHHHHhcCCccCCcEEEEeeccCC
Q 015450 326 EALRMLNGTQLGGQNIRLSWGRSP 349 (406)
Q Consensus 326 ~A~~~l~g~~~~g~~l~v~~~~~~ 349 (406)
+|++ +++..|+|+.|+|.|++++
T Consensus 144 ~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 144 RVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHh-CCCEEeCCeEEEEeecCCC
Confidence 9998 8999999999999999864
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=1.9e-30 Score=225.61 Aligned_cols=174 Identities=22% Similarity=0.351 Sum_probs=148.6
Q ss_pred CCCCceEEEcCCCc-cccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 170 DTPDHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 170 ~~~~~~l~v~~lp~-~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
...+++|||+||+. ++++++|+++| +.||.|.+++++.+. +|||||+|.+.++|.+|++.+++..+.|+.|.|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F-~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILF-GVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHH-HHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHH-HhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 45678999999999 99999999999 899999999998775 789999999999999999999999999999999
Q ss_pred cccCCCCccccccc--------------------CCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCC-cEEEEEe
Q 015450 249 GPATNKKTVSASYQ--------------------NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYG-QLVHVKI 307 (406)
Q Consensus 249 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G-~i~~v~i 307 (406)
.++........... ............+++|||+||+.++++++|+++|+.|| .|.+|++
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence 99875522111000 00000112234579999999999999999999999999 9999999
Q ss_pred -eCCCeEEEEEeCChHHHHHHHHHhcCCccC-CcEEEEeeccCC
Q 015450 308 -PAGKRCGFVQFADRSCAEEALRMLNGTQLG-GQNIRLSWGRSP 349 (406)
Q Consensus 308 -~~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~~~ 349 (406)
.+++++|||+|.+.++|.+|+..|+|..|+ |+.|+|+|++++
T Consensus 185 ~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 185 FQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 558999999999999999999999999999 999999999854
No 20
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.4e-31 Score=221.42 Aligned_cols=165 Identities=24% Similarity=0.422 Sum_probs=144.5
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 159 (406)
++++|||+|||.++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++. +..+.++.+ ++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i--~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVI--DPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEEC--CCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEc--cccc
Confidence 578999999999999999999999999999999999988999999999999999999999985 344544333 3333
Q ss_pred cccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCc
Q 015450 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (406)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 239 (406)
+... ......++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++ +++.
T Consensus 78 ~~~~----~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~ 151 (167)
T 2cjk_A 78 AIPR----DEQDKTGKIFVGGIGPDVRPKEFEEFF-SQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFI 151 (167)
T ss_dssp CCCH----HHHHHCEEEEEEEECTTCCHHHHHHHH-HTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEE
T ss_pred ccch----hhccCCCeEEECCCCCCCCHHHHHHHH-HhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCE
Confidence 3211 112346799999999999999999999 899999999999998899999999999999999999997 8999
Q ss_pred cccCcceEecccCCC
Q 015450 240 FCSTRPMRIGPATNK 254 (406)
Q Consensus 240 ~~~g~~i~v~~~~~~ 254 (406)
.+.|+.|.|.++.++
T Consensus 152 ~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 152 DFKDRKIEIKRAEPR 166 (167)
T ss_dssp CSSSSCEEEEECCCC
T ss_pred EeCCeEEEEeecCCC
Confidence 999999999998765
No 21
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=4e-31 Score=225.11 Aligned_cols=178 Identities=19% Similarity=0.399 Sum_probs=143.4
Q ss_pred CCceEEEcCCCccccHHHHHHHHHhhCCCcceeE-----EEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcce
Q 015450 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK-----VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (406)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~-----~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i 246 (406)
.+++|||+|||+++++++|+++| +.||.|..+. .+.+...++++|||||+|.+.++|.+|+ .+++..+.|+.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F-~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFF-NAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHH-HHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHH-HHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 46899999999999999999999 8885433321 1111123566999999999999999999 899999999999
Q ss_pred EecccCCCCcccccccCC-----ccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEE
Q 015450 247 RIGPATNKKTVSASYQNS-----QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGF 315 (406)
Q Consensus 247 ~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~af 315 (406)
.|.++............. ...........++|||+||+.++++++|+++|+.||.|.+|.+..+ +|+||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 999987654332111100 1111222356799999999999999999999999999999999765 68999
Q ss_pred EEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCC
Q 015450 316 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351 (406)
Q Consensus 316 V~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 351 (406)
|+|.+.++|.+|+..|||..|+|+.|+|+|++++..
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999987654
No 22
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=3.4e-31 Score=220.90 Aligned_cols=164 Identities=19% Similarity=0.370 Sum_probs=143.8
Q ss_pred CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
.....++|||+|||.++++++|+++| +.||.+.. .++.+..+++++|||||+|.+.++|.+|+ .+++..+.|+.|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f-~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAI-SELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHH-HHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHH-HHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 45667899999999999999999999 78888776 33444457889999999999999999999 59999999999999
Q ss_pred cccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEee--CCCeEEEEEeCChHHHHH
Q 015450 249 GPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP--AGKRCGFVQFADRSCAEE 326 (406)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~--~~~g~afV~F~~~~~A~~ 326 (406)
.++...... .....++|||+||+.++++++|+++|+.||.|..+ .. ..+|+|||+|.+.++|.+
T Consensus 86 ~~~~~~~~~-------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~ 151 (175)
T 1fje_B 86 EKPKGRDSK-------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEK 151 (175)
T ss_dssp ECCCCSSCS-------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHH
T ss_pred ecCCCcccc-------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHH
Confidence 998865432 22357899999999999999999999999999888 22 348999999999999999
Q ss_pred HHHHhcCCccCCcEEEEeeccCC
Q 015450 327 ALRMLNGTQLGGQNIRLSWGRSP 349 (406)
Q Consensus 327 A~~~l~g~~~~g~~l~v~~~~~~ 349 (406)
|+..|||..|+|+.|+|+|++++
T Consensus 152 A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 152 NLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999864
No 23
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=2.4e-30 Score=219.82 Aligned_cols=169 Identities=20% Similarity=0.259 Sum_probs=139.5
Q ss_pred CCceEEEcCCC-ccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecc
Q 015450 172 PDHTIFVGDLA-ADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (406)
Q Consensus 172 ~~~~l~v~~lp-~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 250 (406)
.+++|||+||+ +++++++|+++| +.||.|.+++++.+. +|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F-~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVF-CLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHH-TTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHH-HhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 46799999999 899999999999 899999999997653 89999999999999999999999999999999999
Q ss_pred cCCCCccccc-------------ccCCc--c-------ccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcE--EEEE
Q 015450 251 ATNKKTVSAS-------------YQNSQ--V-------AQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL--VHVK 306 (406)
Q Consensus 251 ~~~~~~~~~~-------------~~~~~--~-------~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i--~~v~ 306 (406)
+......... ..... . ........+++|||+|||+++|+++|+++|+.||.| ++++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 8754321100 00000 0 000112456899999999999999999999999999 8999
Q ss_pred eeCC----CeEEEEEeCChHHHHHHHHHhcCCccCCc----EEEEeec
Q 015450 307 IPAG----KRCGFVQFADRSCAEEALRMLNGTQLGGQ----NIRLSWG 346 (406)
Q Consensus 307 i~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~g~----~l~v~~~ 346 (406)
+..+ +|+|||+|.+.++|.+||..|||..|+|+ .+.|+|+
T Consensus 157 ~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 157 VFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8765 58999999999999999999999999887 4666654
No 24
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=4e-30 Score=218.81 Aligned_cols=172 Identities=23% Similarity=0.357 Sum_probs=146.2
Q ss_pred CCceEEEcCCCc-cccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecc
Q 015450 172 PDHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (406)
Q Consensus 172 ~~~~l~v~~lp~-~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 250 (406)
.+++|||+|||. ++++++|+++| +.||.|..++++.+. +|||||+|.+.++|.+|++.+++..+.|+.|.|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F-~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 75 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILF-GVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 75 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHH-HTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHH-HhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEE
Confidence 357999999999 99999999999 899999999988765 78999999999999999999999999999999998
Q ss_pred cCCCCcccccccC--------------------CccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCC-cEEEEEe-e
Q 015450 251 ATNKKTVSASYQN--------------------SQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYG-QLVHVKI-P 308 (406)
Q Consensus 251 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G-~i~~v~i-~ 308 (406)
+............ ...........+++|||+||+.++++++|+++|+.|| .|.+|.+ .
T Consensus 76 a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~ 155 (198)
T 1qm9_A 76 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 155 (198)
T ss_dssp CCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS
T ss_pred ecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe
Confidence 8754321110000 0000111234589999999999999999999999999 9999999 4
Q ss_pred CCCeEEEEEeCChHHHHHHHHHhcCCccC-CcEEEEeeccCC
Q 015450 309 AGKRCGFVQFADRSCAEEALRMLNGTQLG-GQNIRLSWGRSP 349 (406)
Q Consensus 309 ~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~~~ 349 (406)
.++|+|||+|.+.++|.+|+..|||..|+ |+.|+|+|++++
T Consensus 156 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 156 KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 47999999999999999999999999999 999999999854
No 25
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=7.6e-30 Score=212.11 Aligned_cols=152 Identities=20% Similarity=0.480 Sum_probs=134.7
Q ss_pred CCceEEEcCCCccccHHHHHHHHHhhC----C-------CcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCcc
Q 015450 172 PDHTIFVGDLAADVTDYMLQETFRARY----P-------STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (406)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~----g-------~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 240 (406)
.+++|||+|||.++++++|+++| +.| | .|.++.+ ++++|||||+|.+.++|.+|+ .+++..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F-~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFF-NAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHH-HHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHH-HHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 45799999999999999999999 888 5 3344433 345899999999999999999 899999
Q ss_pred ccCcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEE
Q 015450 241 CSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCG 314 (406)
Q Consensus 241 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~a 314 (406)
+.|+.|.|.++..... ....++|||+||+.++++++|+++|++||.|.++.+.++ +|+|
T Consensus 75 ~~g~~i~v~~~~~~~~---------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~a 139 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQP---------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 139 (172)
T ss_dssp ETTEECEEECCSSCCC---------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEE
T ss_pred ecCceeeecCCcccCC---------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEE
Confidence 9999999988765432 123789999999999999999999999999999999765 6899
Q ss_pred EEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 315 FVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 315 fV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
||+|.+.++|.+|+..|||..|+|+.|+|+||
T Consensus 140 fV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 140 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999999999999997
No 26
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=3.1e-29 Score=208.42 Aligned_cols=160 Identities=23% Similarity=0.425 Sum_probs=139.7
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcc----c-------ceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCC
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHT----G-------EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP 147 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~ 147 (406)
++.++|||+|||.++|+++|+++|++| | .|.++++.+ ++|||||+|.+.++|.+|+ .+++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 357899999999999999999999999 5 666666543 4699999999999999999 899999
Q ss_pred CCCCCcceeeeecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHH
Q 015450 148 MPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227 (406)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~ 227 (406)
+.++. +++.++... ......++|||+||+.++++++|+++| +.||.|..+.+..+..+++++|+|||+|.+.+
T Consensus 75 ~~g~~--i~v~~~~~~----~~~~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~ 147 (172)
T 2g4b_A 75 FQGQS--LKIRRPHDY----QPLPGAHKLFIGGLPNYLNDDQVKELL-TSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 147 (172)
T ss_dssp ETTEE--CEEECCSSC----CCCTTTTCEEEECCCTTCCHHHHHHHH-HTTSCEEEEEEEECTTTCSEEEEEEEEESSTT
T ss_pred ecCce--eeecCCccc----CCCCCCCEEEEEcCCCcCCHHHHHHHH-HhcCCceEEEEEecCCCCCcceEEEEEeCCHH
Confidence 96654 444443322 223457899999999999999999999 89999999999999889999999999999999
Q ss_pred HHHHHHHHhcCccccCcceEecccC
Q 015450 228 EQLRAMTEMNGVFCSTRPMRIGPAT 252 (406)
Q Consensus 228 ~a~~a~~~~~~~~~~g~~i~v~~~~ 252 (406)
+|.+|++.|++..++|+.|.|.++.
T Consensus 148 ~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 148 VTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999873
No 27
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=7.2e-29 Score=210.68 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=131.0
Q ss_pred CcceeeecCCC-cccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 80 EIRTLWIGDLQ-YWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 80 ~~~~l~v~~lp-~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
++++|||+||+ .++|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|++|++.|||..+.++.+.|.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~-- 75 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVC-- 75 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE--
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE--
Confidence 47899999999 899999999999999999999998653 5999999999999999999999999977655554
Q ss_pred ecccCCCC---------------------------------CCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCc--ce
Q 015450 159 WASFGAGE---------------------------------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST--KG 203 (406)
Q Consensus 159 ~~~~~~~~---------------------------------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v--~~ 203 (406)
++...... .....++++|||+||++++++++|+++| +.||.| ..
T Consensus 76 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F-~~~G~v~~~~ 154 (205)
T 3tyt_A 76 VSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEIC-DELGVKRPTS 154 (205)
T ss_dssp ECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHH-HHHTCCCCSE
T ss_pred EccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHH-HhcCCcceEE
Confidence 33211100 0011346789999999999999999999 899999 77
Q ss_pred eEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcc
Q 015450 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (406)
Q Consensus 204 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~ 245 (406)
++++.+. +.++|+|||+|.+.++|.+|+..||+..+.|+.
T Consensus 155 v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 155 VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 8877664 556799999999999999999999999998873
No 28
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=2.7e-28 Score=219.31 Aligned_cols=165 Identities=22% Similarity=0.439 Sum_probs=141.5
Q ss_pred CCCCcceeeecCCCcccCHHHHh----hhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCC
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLN----TCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~ 152 (406)
+...+++|||+||+.++|+++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|.+|++.||+..+.++.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 44668999999999999999976 8999999999999886 6789999999999999999999999999997754
Q ss_pred cceeeeecccCCC-------------------------------------------------------------------
Q 015450 153 QNFRLNWASFGAG------------------------------------------------------------------- 165 (406)
Q Consensus 153 ~~~~~~~~~~~~~------------------------------------------------------------------- 165 (406)
+ ++.++.....
T Consensus 82 l--~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 82 M--RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred E--EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 4 4444432211
Q ss_pred ----------------------------------------CCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeE
Q 015450 166 ----------------------------------------EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK 205 (406)
Q Consensus 166 ----------------------------------------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~ 205 (406)
.......+++|||+||+.++++++|+++| +.||.|..++
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F-~~~G~i~~v~ 238 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLF-NQFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHH-HhcCCeEEEE
Confidence 00122356789999999999999999999 8999999999
Q ss_pred EEecCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc-CcceEecccC
Q 015450 206 VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS-TRPMRIGPAT 252 (406)
Q Consensus 206 ~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~-g~~i~v~~~~ 252 (406)
++.++ +|||||+|.+.++|.+|++.|++..+. |+.|+|.|+.
T Consensus 239 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 239 LVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 98654 689999999999999999999999999 9999999875
No 29
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=2e-28 Score=217.06 Aligned_cols=157 Identities=27% Similarity=0.424 Sum_probs=140.4
Q ss_pred CCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcce
Q 015450 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (406)
Q Consensus 167 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i 246 (406)
.......++|||+|||.++++++|+++| +.||.|..+.+.. ++|||||+|.+.++|.+|+..+++..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l 88 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLF-ERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPL 88 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHT-GGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCcee
Confidence 3445667899999999999999999999 8999999998853 37999999999999999999999999999999
Q ss_pred EecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCCh
Q 015450 247 RIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADR 321 (406)
Q Consensus 247 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~ 321 (406)
.|.++.. .++|||+||+.++|+++|+++|+.||.|.+|.|..+ +|+|||+|.+.
T Consensus 89 ~v~~a~~---------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 147 (261)
T 3sde_A 89 RIRFATH---------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAK 147 (261)
T ss_dssp EEEECCC---------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSH
T ss_pred Eeeeccc---------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCH
Confidence 9998763 468999999999999999999999999999999755 78999999999
Q ss_pred HHHHHHHHHhcCC-ccC---CcEEEEeeccCCCC
Q 015450 322 SCAEEALRMLNGT-QLG---GQNIRLSWGRSPSN 351 (406)
Q Consensus 322 ~~A~~A~~~l~g~-~~~---g~~l~v~~~~~~~~ 351 (406)
++|.+|+..|++. .+. ++.|.|+++.....
T Consensus 148 ~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 148 PPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred HHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 9999999999554 444 99999999986543
No 30
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=2e-29 Score=210.20 Aligned_cols=166 Identities=17% Similarity=0.286 Sum_probs=141.2
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.+...++|||+|||.++|+++|+++|+.||.+.. .++.+..+++++|||||+|.+.++|.+|++ |++..+.+ ..++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g--~~l~ 84 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG--NEIK 84 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETT--EEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCC--eEEE
Confidence 4567899999999999999999999999998776 334454578999999999999999999995 99999975 4555
Q ss_pred eeecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHh
Q 015450 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (406)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 236 (406)
+.++... ........++|||+||+.++++++|+++| +.||.|..+ ..+++++|||||+|.+.++|.+|++.|
T Consensus 85 v~~~~~~--~~~~~~~~~~l~v~nlp~~~t~~~l~~~F-~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 1fje_B 85 LEKPKGR--DSKKVRAARTLLAKNLSFNITEDELKEVF-EDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEK 156 (175)
T ss_dssp EECCCCS--SCSTTGGGGEEEEESCCSSCCHHHHHHHC-TTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHH
T ss_pred EecCCCc--cccccccCCEEEEeCCCCCCCHHHHHHHH-HhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 6555433 22334567899999999999999999999 788876544 558899999999999999999999999
Q ss_pred cCccccCcceEecccCCC
Q 015450 237 NGVFCSTRPMRIGPATNK 254 (406)
Q Consensus 237 ~~~~~~g~~i~v~~~~~~ 254 (406)
++..+.|+.|.|.++..+
T Consensus 157 ~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 157 QGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp TEEEETTEEEEEEECSSC
T ss_pred CCCEECCeEEEEEecCCC
Confidence 999999999999998764
No 31
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=1.8e-28 Score=208.69 Aligned_cols=167 Identities=21% Similarity=0.369 Sum_probs=141.5
Q ss_pred CcceeeecCCCcccCHHHHhhhhhccc-----------ceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCC
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTG-----------EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G-----------~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~ 148 (406)
.+++|||+|||.++|+++|+++|+.|| .|.++.+ ++++|||||+|.+.++|.+|+ .|++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 578999999999999999999999995 4455544 456799999999999999999 8999998
Q ss_pred CCCCcceeeeecccCCC----------------CCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCC
Q 015450 149 PNGEQNFRLNWASFGAG----------------EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212 (406)
Q Consensus 149 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~ 212 (406)
.++ .+++.++..... ........++|||+||+.++++++|+++| +.||.|..+.+..+..+
T Consensus 76 ~g~--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f-~~~G~v~~~~~~~~~~~ 152 (198)
T 2yh0_A 76 QGQ--SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELL-TSFGPLKAFNLVKDSAT 152 (198)
T ss_dssp TTE--EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHH-HTBSCEEEEEEEECTTT
T ss_pred cCc--eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHH-HHcCCccEEEEeecCCC
Confidence 665 445555433211 11122566899999999999999999999 89999999999999889
Q ss_pred CCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCCc
Q 015450 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256 (406)
Q Consensus 213 ~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~ 256 (406)
++++|||||+|.+.++|.+|++.|++..++|+.|+|.++..+..
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999999999999999887543
No 32
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=5.2e-28 Score=217.63 Aligned_cols=173 Identities=16% Similarity=0.260 Sum_probs=154.7
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 159 (406)
..++|||+|||.++|+++|+++|+.||.|.+++++.+..+|+++|||||+|.+.++|.+|++.+++..+.++ .+++.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~--~i~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR--TLYVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc--EEEEEE
Confidence 357999999999999999999999999999999999998999999999999999999999999999998654 555566
Q ss_pred cccCCCCCCCCCCCceEEEcCCCccc-cHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcC
Q 015450 160 ASFGAGEKRDDTPDHTIFVGDLAADV-TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (406)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~~lp~~~-~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 238 (406)
+..... .......++|||+||+.++ ++++|+++| +.||.|..+.++.+. +|+++|+|||+|.+.++|.+|+..|++
T Consensus 172 a~~~~~-~~~~~~~~~l~v~nlp~~~~~~~~l~~~f-~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 172 TDAGQL-TPALLHSRCLCVDRLPPGFNDVDALCRAL-SAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CCGGGC-CTTTTSCSEEEEECCCTTCCCHHHHHHHT-CSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCC-CcccCCccEEEEecCCcccCCHHHHHHHh-hCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 554322 2334567899999999995 999999999 899999999999887 899999999999999999999999999
Q ss_pred ccccCcceEecccCCCCcc
Q 015450 239 VFCSTRPMRIGPATNKKTV 257 (406)
Q Consensus 239 ~~~~g~~i~v~~~~~~~~~ 257 (406)
..+.|+.|.|.++..+...
T Consensus 249 ~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 249 LSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp CEETTEECEEEECCSSSCH
T ss_pred CccCCeEEEEEEecCCCcc
Confidence 9999999999999876653
No 33
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=4.9e-28 Score=210.35 Aligned_cols=163 Identities=16% Similarity=0.270 Sum_probs=138.9
Q ss_pred CCcceeeecCCCc-ccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 79 GEIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 79 ~~~~~l~v~~lp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
..+++|||+|||. ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|++|++.|++..+.++.+.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v-- 104 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI-- 104 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE--
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE--
Confidence 4578999999999 99999999999999999999999875 589999999999999999999999997655544
Q ss_pred eecccCC------CC-------------------------CCCCCCCceEEEcCCCccccHHHHHHHHHhhCC-CcceeE
Q 015450 158 NWASFGA------GE-------------------------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAK 205 (406)
Q Consensus 158 ~~~~~~~------~~-------------------------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g-~v~~~~ 205 (406)
.++.... .. .....++++|||+||+.++++++|+++| +.|| .|..+.
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~~i~~v~ 183 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLF-SSNGGVVKGFK 183 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHH-HTTSCCEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHH-HHcCCCeeEEE
Confidence 4433210 00 0112346899999999999999999999 8999 999998
Q ss_pred EEecCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc-CcceEecccCCC
Q 015450 206 VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS-TRPMRIGPATNK 254 (406)
Q Consensus 206 ~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~-g~~i~v~~~~~~ 254 (406)
++.+ .+|+|||+|.+.++|.+|++.|++..+. |+.|+|.++...
T Consensus 184 i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 8653 3789999999999999999999999999 999999998753
No 34
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=4e-28 Score=219.26 Aligned_cols=170 Identities=14% Similarity=0.272 Sum_probs=142.2
Q ss_pred CcceeeecCCCcccCHHHHhhhhhccc-ceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
..++|||+|||.++++++|+++|+.|| .|.+|+++.+.. ++++|||||+|.+.++|.+|++.|++..+.+ ..+++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEG--YTLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETT--EECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCC--cEEEEE
Confidence 578999999999999999999999999 999999998875 8899999999999999999999999999966 455555
Q ss_pred ecccCCCCC---CCCCCCceEEEcCCCcc-ccHHHHHHHHHhhCCCcceeEEEecCC-CCCCcceEEEEecCHHHHHHHH
Q 015450 159 WASFGAGEK---RDDTPDHTIFVGDLAAD-VTDYMLQETFRARYPSTKGAKVVIDRL-TGRTKGYGFVRFGDESEQLRAM 233 (406)
Q Consensus 159 ~~~~~~~~~---~~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~~g~v~~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~ 233 (406)
++....... ......++|||+||+.+ +++++|+++| +.||.|..+.++.+.. |++++|||||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F-~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESF-EGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHH-GGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHH-hccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 554332221 23456789999999999 9999999999 8999999999988875 5999999999999999999999
Q ss_pred HHhcCccccCcceEecccCCC
Q 015450 234 TEMNGVFCSTRPMRIGPATNK 254 (406)
Q Consensus 234 ~~~~~~~~~g~~i~v~~~~~~ 254 (406)
.|++..+.|+.|.|.++..+
T Consensus 272 -~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -GGTTEEETTEEEEEEECCCC
T ss_pred -HhcCCEECCcEEEEEEecCC
Confidence 99999999999999998865
No 35
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=1.4e-27 Score=203.04 Aligned_cols=161 Identities=16% Similarity=0.247 Sum_probs=137.6
Q ss_pred cceeeecCCCc-ccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeee
Q 015450 81 IRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (406)
Q Consensus 81 ~~~l~v~~lp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 159 (406)
+++|||+|||. ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|++..+.++.+.+. +
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~--~ 75 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT--L 75 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEE--E
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEE--E
Confidence 68999999999 99999999999999999999998775 5899999999999999999999999976555544 4
Q ss_pred cccCCC--C-----------------------------CCCCCCCceEEEcCCCccccHHHHHHHHHhhCC-CcceeEEE
Q 015450 160 ASFGAG--E-----------------------------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVV 207 (406)
Q Consensus 160 ~~~~~~--~-----------------------------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g-~v~~~~~~ 207 (406)
+..... . .....++++|||+||+.++++++|+++| +.|| .|..+.++
T Consensus 76 a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f-~~~G~~v~~v~i~ 154 (198)
T 1qm9_A 76 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLF-SSNGGVVKGFKFF 154 (198)
T ss_dssp CCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHH-HHTTSCCCEEEES
T ss_pred ecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHH-HHcCCCceEEEEE
Confidence 332100 0 0112347899999999999999999999 8999 99999886
Q ss_pred ecCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc-CcceEecccCCC
Q 015450 208 IDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS-TRPMRIGPATNK 254 (406)
Q Consensus 208 ~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~-g~~i~v~~~~~~ 254 (406)
.+. +|+|||+|.+.++|.+|++.|++..+. |+.|+|.++...
T Consensus 155 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 155 QKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp STT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred eCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 543 799999999999999999999999999 999999998753
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=3e-27 Score=209.51 Aligned_cols=160 Identities=26% Similarity=0.444 Sum_probs=140.6
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.....++|||+|||.++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.+++..+.++ .++
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~--~l~ 89 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSR--PLR 89 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCc--eeE
Confidence 3466789999999999999999999999999999999654 48999999999999999999999999664 455
Q ss_pred eeecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHh
Q 015450 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (406)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 236 (406)
+.++. ...+|||+||+.++++++|+++| +.||.|..+.++.+ .+++++|||||+|.+.++|.+|+..|
T Consensus 90 v~~a~----------~~~~l~v~nl~~~~t~~~l~~~F-~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 90 IRFAT----------HGAALTVKNLSPVVSNELLEQAF-SQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp EEECC----------CSSEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred eeecc----------cCCcccccCCCCCCCHHHHHHHH-HhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 55443 35799999999999999999999 89999999999999 48999999999999999999999999
Q ss_pred cC-cccc---CcceEecccCCCCc
Q 015450 237 NG-VFCS---TRPMRIGPATNKKT 256 (406)
Q Consensus 237 ~~-~~~~---g~~i~v~~~~~~~~ 256 (406)
++ ..+. ++.|.|.++.....
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEES
T ss_pred cCCeEEecCCCceEEEeeccccCc
Confidence 54 4444 99999999886543
No 37
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.90 E-value=1.7e-23 Score=169.06 Aligned_cols=138 Identities=24% Similarity=0.302 Sum_probs=116.3
Q ss_pred CCCCcceEEEEecCHHHHHHHHHHh-cCccccCcceEecccCCCCcccccc-cCCccccCCCCCCCceEEEcCCCCCCCH
Q 015450 212 TGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRPMRIGPATNKKTVSASY-QNSQVAQSDDDPNNTTVFVGNLDSIVTD 289 (406)
Q Consensus 212 ~~~~~g~afv~f~~~~~a~~a~~~~-~~~~~~g~~i~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~V~nlp~~~t~ 289 (406)
....+|+++|+|.+.++|++|++.+ ++..++| .+.+.++.......... ..............++|||+||+.++++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3467899999999999999999999 9999999 99999887543321110 0111122344556899999999999999
Q ss_pred HHHHHHhccCCcEEEEEeeCC-CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCC
Q 015450 290 EHLRELFSQYGQLVHVKIPAG-KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350 (406)
Q Consensus 290 e~l~~~F~~~G~i~~v~i~~~-~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 350 (406)
++|+++|+.||.|.+|+|.++ +|||||+|.+.++|.+|+..|||..|+|+.|+|+|++++.
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999887 9999999999999999999999999999999999998653
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=8.4e-23 Score=166.71 Aligned_cols=146 Identities=23% Similarity=0.307 Sum_probs=110.2
Q ss_pred eEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCC
Q 015450 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNL 283 (406)
Q Consensus 204 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl 283 (406)
++++.+. .+++||+||+|.+.++|++|++.+++....+..+.+......... ................++|||+||
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~v~nl 78 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTV--TEGSHHHHHHMDVEGMTSLKVDNL 78 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEE--ECCCCCSSCCCCCCBCCEEEEESC
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccc--cccccccccccCCCCCCEEEEeCC
Confidence 5666664 368999999999999999999888764433333333222111110 000111112233456789999999
Q ss_pred CCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCCCC
Q 015450 284 DSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353 (406)
Q Consensus 284 p~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 353 (406)
+.++++++|+++|+.||.|.+|.|.++ +|||||+|.+.++|.+|+..|||..|+|+.|+|+|++......
T Consensus 79 ~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 79 TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 999999999999999999999999764 6899999999999999999999999999999999999765443
No 39
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=6.7e-22 Score=161.34 Aligned_cols=144 Identities=24% Similarity=0.336 Sum_probs=114.9
Q ss_pred EEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCc-----ceeeee--cccCCCCCCCCCCCceEEEcCCC
Q 015450 110 AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ-----NFRLNW--ASFGAGEKRDDTPDHTIFVGDLA 182 (406)
Q Consensus 110 ~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~l~v~~lp 182 (406)
+++++.+.. +++|||||+|.+.++|++|++.+++........ ...... ...............+|||+||+
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 567777764 789999999999999999998876533222111 111111 11111222334557899999999
Q ss_pred ccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCCc
Q 015450 183 ADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256 (406)
Q Consensus 183 ~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~ 256 (406)
+++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.....
T Consensus 80 ~~~~~~~l~~~F-~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 80 YRTSPDTLRRVF-EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp TTCCHHHHHHHH-HHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CCCCHHHHHHHH-HhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 999999999999 8999999999999988999999999999999999999999999999999999999987644
No 40
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-20 Score=139.56 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcC--CccCCcEEEEeeccCC
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG--TQLGGQNIRLSWGRSP 349 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g~~l~v~~~~~~ 349 (406)
....++|||+||++++++++|+++|++||.|++|.|.++||||||+|++.++|.+|++.|++ ..|+|+.|+|.|++.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 44678999999999999999999999999999999999999999999999999999998864 6899999999999876
Q ss_pred CCCC
Q 015450 350 SNKQ 353 (406)
Q Consensus 350 ~~~~ 353 (406)
....
T Consensus 93 ~~~~ 96 (105)
T 1sjq_A 93 ELKT 96 (105)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6544
No 41
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.7e-20 Score=135.99 Aligned_cols=84 Identities=18% Similarity=0.280 Sum_probs=76.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhc--CCccCCcEEEEeecc
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN--GTQLGGQNIRLSWGR 347 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~l~v~~~~ 347 (406)
.....+++|||+||++++++++|+++|++||.|++|.+.++||||||+|++.++|.+|+..|+ +..|.|+.|+|.|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 334567899999999999999999999999999999999999999999999999999999874 677999999999999
Q ss_pred CCCCCC
Q 015450 348 SPSNKQ 353 (406)
Q Consensus 348 ~~~~~~ 353 (406)
.+....
T Consensus 90 ~~~~~~ 95 (101)
T 2cq1_A 90 HKELKT 95 (101)
T ss_dssp CSSCCC
T ss_pred cccCcC
Confidence 766654
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=9.4e-21 Score=145.32 Aligned_cols=106 Identities=18% Similarity=0.346 Sum_probs=69.8
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeee
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 159 (406)
...+|||+|||.++|+++|+++|++||.|.+|+|++++ ++++|||||+|.+.++|++|++.|++..+.++. +++.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~--i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK--VFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEE--CEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEE--EEEEE
Confidence 35689999999999999999999999999999999986 568999999999999999999999999997654 45555
Q ss_pred cccCCCC----CCCCCCCceEEEcCCCccccHHH
Q 015450 160 ASFGAGE----KRDDTPDHTIFVGDLAADVTDYM 189 (406)
Q Consensus 160 ~~~~~~~----~~~~~~~~~l~v~~lp~~~~~~~ 189 (406)
+...... ........+|||+||+.++|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 4432211 12233446799999999998864
No 43
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=135.79 Aligned_cols=80 Identities=23% Similarity=0.329 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCc--cCCcEEEEeeccC
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ--LGGQNIRLSWGRS 348 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~--~~g~~l~v~~~~~ 348 (406)
...++++|||+|||.++|+++|+++|++||.|++|.+.++||+|||+|++.++|.+|+..|++.. |+|+.|+|+|++.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 34568999999999999999999999999999999999999999999999999999999999876 7899999999986
Q ss_pred CC
Q 015450 349 PS 350 (406)
Q Consensus 349 ~~ 350 (406)
+.
T Consensus 97 k~ 98 (100)
T 3r27_A 97 QK 98 (100)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 44
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=3.6e-20 Score=150.52 Aligned_cols=80 Identities=33% Similarity=0.536 Sum_probs=73.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
...++|||+||+.++++++|+++|+.||.|++|.|..+ ++||||+|.+.++|.+||..||+..|+|+.|+|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999654 589999999999999999999999999999999999
Q ss_pred cCCCCC
Q 015450 347 RSPSNK 352 (406)
Q Consensus 347 ~~~~~~ 352 (406)
++....
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 875543
No 45
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=4.3e-20 Score=136.78 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCC--ccCCcEEEEeeccCC
Q 015450 273 PNNTTVFVGNLDS-IVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGT--QLGGQNIRLSWGRSP 349 (406)
Q Consensus 273 ~~~~~l~V~nlp~-~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~--~~~g~~l~v~~~~~~ 349 (406)
..+++|||+||++ ++++++|+++|++||.|.+|.|.+++++|||+|++.++|.+|+..|++. .|.|+.|+|.|++..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 3678999999999 9999999999999999999999999999999999999999999999865 499999999999864
Q ss_pred CC
Q 015450 350 SN 351 (406)
Q Consensus 350 ~~ 351 (406)
..
T Consensus 93 ~~ 94 (102)
T 1x4d_A 93 KR 94 (102)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 46
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=3.7e-20 Score=137.57 Aligned_cols=75 Identities=32% Similarity=0.525 Sum_probs=70.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
..++|||+|||.++|+++|+++|++||.|.+|+|.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4678999999999999999999999999999999654 5799999999999999999999999999999999997
Q ss_pred C
Q 015450 348 S 348 (406)
Q Consensus 348 ~ 348 (406)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 47
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=3e-20 Score=142.45 Aligned_cols=109 Identities=28% Similarity=0.459 Sum_probs=75.1
Q ss_pred CceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccC
Q 015450 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (406)
Q Consensus 173 ~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~ 252 (406)
+.+|||+||++++++++|+++| +.||.|.+++++.+. +.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F-~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTF-SAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHH-hccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 5689999999999999999999 899999999999985 4579999999999999999999999999999999999988
Q ss_pred CCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHH
Q 015450 253 NKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 291 (406)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~ 291 (406)
.+...... ........++|||+||+.++|++.
T Consensus 82 ~~~~~~~~-------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAE-------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC-----------------------------------
T ss_pred Cccccccc-------cccccCCCCceEeCCCCCCccccc
Confidence 65543221 112233456799999999998863
No 48
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-19 Score=134.66 Aligned_cols=82 Identities=21% Similarity=0.285 Sum_probs=74.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCC--ccCCcEEEEeeccC
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGT--QLGGQNIRLSWGRS 348 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~--~~~g~~l~v~~~~~ 348 (406)
....+++|||+||++++++++|+++|++||.|.+|.+.++|++|||+|++.++|.+|+..|++. .|+|+.|+|.|++.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 3456789999999999999999999999999999999999999999999999999999988765 49999999999987
Q ss_pred CCCC
Q 015450 349 PSNK 352 (406)
Q Consensus 349 ~~~~ 352 (406)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wex_A 91 KRIT 94 (104)
T ss_dssp SSCC
T ss_pred cccc
Confidence 6544
No 49
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=7.7e-20 Score=128.52 Aligned_cols=75 Identities=21% Similarity=0.211 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
..+..|+|+||++.+|+++|+++|++||+|.++.+..+||||||+|.|.++|.+|++.||+..+.|+.|+|++|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 346789999999999999999999999999999999999999999999999999999999999999999999984
No 50
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=8.1e-20 Score=147.41 Aligned_cols=127 Identities=20% Similarity=0.338 Sum_probs=109.3
Q ss_pred CCccceEEEEEccHHHHHHHHHHc-CCCCCCCCCcceeeeecccC------------CCCCCCCCCCceEEEcCCCcccc
Q 015450 120 GQIEGYGFIEFISRAGAERVLQTF-NGTPMPNGEQNFRLNWASFG------------AGEKRDDTPDHTIFVGDLAADVT 186 (406)
Q Consensus 120 ~~~~g~a~V~f~~~~~a~~a~~~l-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~v~~lp~~~~ 186 (406)
.+.+|+++|+|.+.++|++|++.+ |+..+.+ .++++++... ..........++|||+||+++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 467899999999999999999999 9999977 5666655431 12233455678999999999999
Q ss_pred HHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCC
Q 015450 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (406)
Q Consensus 187 ~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~ 255 (406)
+++|+++| +.||.|.++.++.+ ++|||||+|.+.++|.+|++.|++..+.|+.|+|.++..+.
T Consensus 87 ~~~l~~~F-~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 87 KTELERAF-GYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CHHHHHHH-HHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHH-HhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999 89999999999776 58999999999999999999999999999999999987653
No 51
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=137.70 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhc--CCccCCcEEEEeeccCC
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN--GTQLGGQNIRLSWGRSP 349 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~l~v~~~~~~ 349 (406)
...+++|||+||++++++++|+++|++||.|++|.|.++||||||+|++.++|.+|+..|+ +..|.|+.|+|.|++.+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 3467899999999999999999999999999999999999999999999999999999887 46899999999999876
Q ss_pred CCCC
Q 015450 350 SNKQ 353 (406)
Q Consensus 350 ~~~~ 353 (406)
..+.
T Consensus 108 ~~~~ 111 (119)
T 2ad9_A 108 ELKT 111 (119)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6654
No 52
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=5.4e-19 Score=133.97 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCC-----cEEEEeecc
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGG-----QNIRLSWGR 347 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g-----~~l~v~~~~ 347 (406)
...++|||+||+.++++++|+++|+.||.|++|.|..+ +||||+|.+.++|++||+.||+..|+| +.|+|++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 45789999999999999999999999999999999988 999999999999999999999999999 999999999
Q ss_pred CCCCCC
Q 015450 348 SPSNKQ 353 (406)
Q Consensus 348 ~~~~~~ 353 (406)
++....
T Consensus 92 ~~~~~~ 97 (108)
T 1x4c_A 92 PRSPSY 97 (108)
T ss_dssp CCSCCC
T ss_pred CCCCCC
Confidence 765543
No 53
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.81 E-value=4.5e-19 Score=133.26 Aligned_cols=81 Identities=36% Similarity=0.607 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCC
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 351 (406)
....++|||+||+.++++++|+++|+.||.|.+|.+. +++|||+|.+.++|.+|+..||+..|+|+.|+|+|++.+..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 3457899999999999999999999999999999998 45999999999999999999999999999999999997765
Q ss_pred CCC
Q 015450 352 KQA 354 (406)
Q Consensus 352 ~~~ 354 (406)
...
T Consensus 86 ~~~ 88 (103)
T 2dgu_A 86 KRK 88 (103)
T ss_dssp CCC
T ss_pred cch
Confidence 543
No 54
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.1e-19 Score=129.97 Aligned_cols=80 Identities=34% Similarity=0.603 Sum_probs=74.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCC
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 351 (406)
....++|||+||+.++++++|+++|+.||.|++|.+. +++|||+|.+.++|.+|+..||+..|+|+.|+|+|++.+..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 3467899999999999999999999999999999998 78999999999999999999999999999999999987665
Q ss_pred CC
Q 015450 352 KQ 353 (406)
Q Consensus 352 ~~ 353 (406)
..
T Consensus 83 ~~ 84 (90)
T 2dnq_A 83 AS 84 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 55
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.4e-19 Score=131.85 Aligned_cols=86 Identities=27% Similarity=0.456 Sum_probs=78.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 269 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 269 ~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
.......++|||+||+.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344556899999999999999999999999999999999876 7899999999999999999999999999999999
Q ss_pred eccCCCCCCC
Q 015450 345 WGRSPSNKQA 354 (406)
Q Consensus 345 ~~~~~~~~~~ 354 (406)
|++.+.....
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2cq3_A 89 NATARVMTNS 98 (103)
T ss_dssp ECCSSCCCCC
T ss_pred EcccCCCCCC
Confidence 9997765443
No 56
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7e-19 Score=133.74 Aligned_cols=82 Identities=24% Similarity=0.478 Sum_probs=75.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC---CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~---~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
......++|||+||+.++++++|+++|+.||.|++|.|..+ ++||||+|.+.++|.+|++.||+..|+|+.|+|+|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34456799999999999999999999999999999999765 679999999999999999999999999999999999
Q ss_pred cCCCC
Q 015450 347 RSPSN 351 (406)
Q Consensus 347 ~~~~~ 351 (406)
+....
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 86554
No 57
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.2e-19 Score=132.40 Aligned_cols=81 Identities=31% Similarity=0.516 Sum_probs=76.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCC
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 350 (406)
.....++|||+||+.++++++|+++|++||.|++|.+.+++++|||+|.+.++|.+|++.||+..|+|+.|+|+|++.+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred C
Q 015450 351 N 351 (406)
Q Consensus 351 ~ 351 (406)
.
T Consensus 91 ~ 91 (99)
T 2cpj_A 91 S 91 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 58
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=4.4e-19 Score=141.19 Aligned_cols=83 Identities=27% Similarity=0.472 Sum_probs=75.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEE
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
......++|||+||+.++++++|+++|+.||.|++|+|.++ +|+|||+|.+.++|.+|+..||+..|+|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44556799999999999999999999999999999999654 789999999999999999999999999999999
Q ss_pred eeccCCCCC
Q 015450 344 SWGRSPSNK 352 (406)
Q Consensus 344 ~~~~~~~~~ 352 (406)
+|++....+
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999976544
No 59
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.8e-19 Score=132.74 Aligned_cols=85 Identities=26% Similarity=0.422 Sum_probs=77.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
......++|||+||+.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34457899999999999999999999999999999999854 78999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 015450 346 GRSPSNKQA 354 (406)
Q Consensus 346 ~~~~~~~~~ 354 (406)
++.+..+..
T Consensus 90 a~~~~~~~~ 98 (103)
T 2d9p_A 90 AQRKEERQS 98 (103)
T ss_dssp CSSCCCCCC
T ss_pred ecccccCCC
Confidence 997766543
No 60
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.9e-19 Score=131.07 Aligned_cols=80 Identities=20% Similarity=0.417 Sum_probs=75.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccC--CcEEEEeeccCC
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLG--GQNIRLSWGRSP 349 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~--g~~l~v~~~~~~ 349 (406)
....++|||+||+.++++++|+++|++||.|++|.+.+++++|||+|.+.++|++|++.||+..|+ |+.|+|+|++++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 446789999999999999999999999999999999999999999999999999999999999999 999999999865
Q ss_pred CC
Q 015450 350 SN 351 (406)
Q Consensus 350 ~~ 351 (406)
..
T Consensus 94 ~~ 95 (97)
T 1why_A 94 PS 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 61
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=135.39 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=74.5
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcC--CccCCcEEEEeeccC
Q 015450 272 DPNNTTVFVGNLDSI-VTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG--TQLGGQNIRLSWGRS 348 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~-~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g~~l~v~~~~~ 348 (406)
...+++|||+||+++ +++++|+++|++||.|.+|.|.++|+||||+|++.++|.+|+..|++ ..|.|+.|+|.|++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 446889999999998 99999999999999999999999999999999999999999998864 569999999999986
Q ss_pred CCCCC
Q 015450 349 PSNKQ 353 (406)
Q Consensus 349 ~~~~~ 353 (406)
.....
T Consensus 102 ~~~~~ 106 (112)
T 1x4f_A 102 YKKLV 106 (112)
T ss_dssp CSSSS
T ss_pred ccccc
Confidence 55543
No 62
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.3e-19 Score=134.86 Aligned_cols=82 Identities=30% Similarity=0.641 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCC
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 351 (406)
....++|||+||+.++++++|+++|+.||.|.+|.|.+++++|||+|.+.++|.+|+..|+|..|+|+.|+|.|++....
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999997665
Q ss_pred CC
Q 015450 352 KQ 353 (406)
Q Consensus 352 ~~ 353 (406)
..
T Consensus 102 ~~ 103 (109)
T 1x4g_A 102 MT 103 (109)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 63
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=8.3e-20 Score=143.96 Aligned_cols=121 Identities=24% Similarity=0.328 Sum_probs=76.2
Q ss_pred ceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHh
Q 015450 217 GYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF 296 (406)
Q Consensus 217 g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F 296 (406)
-++|++|.+...+..|+..+++....++.. +.+.. ........++|||+||+.++++++|+++|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~---------------~~~~~~~~~~l~V~nLp~~~te~~L~~~F 68 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR---------------PPPDVEGMTSLKVDNLTYRTSPDTLRRVF 68 (135)
T ss_dssp -------------------------------CCSCC---------------SCSSGGGCCCEEEECCCSSCHHHHHHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCC---------------CCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 367888888888999998888766555431 11111 12223357899999999999999999999
Q ss_pred ccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCCCC
Q 015450 297 SQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353 (406)
Q Consensus 297 ~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 353 (406)
+.||.|++|.|..+ +|+|||+|.+.++|.+|+..||+..|+|+.|+|+|++......
T Consensus 69 ~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 69 EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp GGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred HhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 99999999999754 6799999999999999999999999999999999999765544
No 64
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=132.46 Aligned_cols=84 Identities=30% Similarity=0.561 Sum_probs=76.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-------CeEEEEEeCChHHHHHHHHHh-cCCccCCcEE
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-------KRCGFVQFADRSCAEEALRML-NGTQLGGQNI 341 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-------~g~afV~F~~~~~A~~A~~~l-~g~~~~g~~l 341 (406)
......++|||+||+.++++++|+++|+.||.|++|.|.++ +++|||+|.+.++|.+|+..| |+..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34556899999999999999999999999999999999776 789999999999999999999 9999999999
Q ss_pred EEeeccCCCCCC
Q 015450 342 RLSWGRSPSNKQ 353 (406)
Q Consensus 342 ~v~~~~~~~~~~ 353 (406)
+|+|++......
T Consensus 90 ~v~~a~~~~~~~ 101 (107)
T 2cph_A 90 VLEWADSEVTVQ 101 (107)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999999766544
No 65
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=129.40 Aligned_cols=79 Identities=29% Similarity=0.607 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
..+++|||+||+.++++++|+++|++||.|.+|.+.++ +++|||+|.+.++|.+|+..||+..|+|+.|+|+|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35789999999999999999999999999999999765 579999999999999999999999999999999999
Q ss_pred cCCCC
Q 015450 347 RSPSN 351 (406)
Q Consensus 347 ~~~~~ 351 (406)
+.+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 86654
No 66
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=130.16 Aligned_cols=82 Identities=26% Similarity=0.392 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
....++|||+||+.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999765 58999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 015450 346 GRSPSNKQ 353 (406)
Q Consensus 346 ~~~~~~~~ 353 (406)
++.+....
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 99766543
No 67
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=130.91 Aligned_cols=84 Identities=32% Similarity=0.570 Sum_probs=76.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
......++|||+||+.++++++|+++|+.||.|++|.|.++ ++||||+|.+.++|.+|+..||+..|.|+.|+|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34456799999999999999999999999999999999774 68999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 015450 346 GRSPSNKQ 353 (406)
Q Consensus 346 ~~~~~~~~ 353 (406)
++.+....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 99765543
No 68
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.79 E-value=4.8e-20 Score=173.50 Aligned_cols=79 Identities=18% Similarity=0.380 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
...++|||+||+..+|+++|+++|+.||.|+.|.|..+ +|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999754 789999999999999999999999999999999999
Q ss_pred cCCCC
Q 015450 347 RSPSN 351 (406)
Q Consensus 347 ~~~~~ 351 (406)
+....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86554
No 69
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=129.45 Aligned_cols=82 Identities=20% Similarity=0.461 Sum_probs=74.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
.....++|||+||+.++++++|+++|+.||.|++|.|..+ +++|||+|.+.++|.+|++ |++..|+|+.|+|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999999764 6899999999999999999 99999999999999
Q ss_pred eccCCCCCC
Q 015450 345 WGRSPSNKQ 353 (406)
Q Consensus 345 ~~~~~~~~~ 353 (406)
+++++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 999766544
No 70
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=128.12 Aligned_cols=80 Identities=26% Similarity=0.460 Sum_probs=73.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCC
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 350 (406)
.....++|||+||+.++++++|+++|+.||.|.+|.+.++ +|||+|.+.++|.+|+..||+..|+|+.|+|+|++.+.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3456799999999999999999999999999999999855 99999999999999999999999999999999998665
Q ss_pred CC
Q 015450 351 NK 352 (406)
Q Consensus 351 ~~ 352 (406)
..
T Consensus 84 ~~ 85 (92)
T 2dgt_A 84 RT 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 71
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=131.36 Aligned_cols=83 Identities=30% Similarity=0.487 Sum_probs=75.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
.....++|||+||+.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456799999999999999999999999999999999754 6899999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 015450 345 WGRSPSNKQ 353 (406)
Q Consensus 345 ~~~~~~~~~ 353 (406)
|++......
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dnm_A 89 VARYGRRDL 97 (103)
T ss_dssp ECSSCCSCC
T ss_pred ECCcCCCCC
Confidence 999765544
No 72
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.1e-19 Score=128.05 Aligned_cols=77 Identities=34% Similarity=0.682 Sum_probs=73.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHh-cCCccCCcEEEEeecc
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRML-NGTQLGGQNIRLSWGR 347 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l-~g~~~~g~~l~v~~~~ 347 (406)
.....++|||+||+.++++++|+++|++||.|.+|.+.+++++|||+|.+.++|.+|+..| ++..|+|+.|+|+|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3456789999999999999999999999999999999999999999999999999999999 9999999999999986
No 73
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.9e-19 Score=131.78 Aligned_cols=84 Identities=25% Similarity=0.447 Sum_probs=76.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
.....++|||+||+.++++++|+++|+.||.|++|.|..+ +++|||+|.+.++|.+|++.||+..|+|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456799999999999999999999999999999999654 7899999999999999999999999999999999
Q ss_pred eccCCCCCCC
Q 015450 345 WGRSPSNKQA 354 (406)
Q Consensus 345 ~~~~~~~~~~ 354 (406)
|+++...+..
T Consensus 88 ~a~~~~~~~~ 97 (102)
T 2cqb_A 88 LAKPMRIKES 97 (102)
T ss_dssp ECCCCCCCCC
T ss_pred eCCCCCCCCC
Confidence 9997765543
No 74
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.7e-19 Score=130.50 Aligned_cols=81 Identities=23% Similarity=0.469 Sum_probs=73.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeC---------CCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEE
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---------GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~---------~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
...++|||+||+.++++++|+++|+.||.|.+|.|.. .+++|||+|.+.++|.+|+..||+..|+|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3578999999999999999999999999999999963 3579999999999999999999999999999999
Q ss_pred eeccCCCCCC
Q 015450 344 SWGRSPSNKQ 353 (406)
Q Consensus 344 ~~~~~~~~~~ 353 (406)
+|++......
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998766544
No 75
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=7.7e-19 Score=132.97 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
...++|||+||++++++++|+++|++||.|++|+|.++ +|||||+|++.++|++|++.|||..|+|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999644 689999999999999999999999999999999998
Q ss_pred cCCC
Q 015450 347 RSPS 350 (406)
Q Consensus 347 ~~~~ 350 (406)
+...
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7543
No 76
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=2.1e-19 Score=154.76 Aligned_cols=75 Identities=23% Similarity=0.361 Sum_probs=69.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCC--cEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYG--QLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G--~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
..++|||+||++++|+++|+++|+.|| .|++|+|.++ ||||||+|.+.++|.+||+.||+..|+|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 9999999755 68999999999999999999999999999999999
Q ss_pred ccC
Q 015450 346 GRS 348 (406)
Q Consensus 346 ~~~ 348 (406)
++.
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 77
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.9e-19 Score=130.92 Aligned_cols=80 Identities=28% Similarity=0.525 Sum_probs=74.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEE-EeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV-KIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v-~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
.+++|||+|||.++++++|+++|+.||.|.+| .|.++ +++|||+|.+.++|.+|+..||+..|+|+.|+|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 57899999999999999999999999999999 88765 789999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 015450 347 RSPSNKQ 353 (406)
Q Consensus 347 ~~~~~~~ 353 (406)
+.+..+.
T Consensus 84 ~~~~~~~ 90 (96)
T 1x5t_A 84 FKKDSKG 90 (96)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 8766544
No 78
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=3.8e-18 Score=131.03 Aligned_cols=84 Identities=31% Similarity=0.619 Sum_probs=76.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEE
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
......++|||+||+.++++++|+++|+.||.|++|.|.++ +++|||+|.+.++|.+|++.||+..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456899999999999999999999999999999999765 589999999999999999999999999999999
Q ss_pred eeccCCCCCC
Q 015450 344 SWGRSPSNKQ 353 (406)
Q Consensus 344 ~~~~~~~~~~ 353 (406)
.|++.+....
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9999766544
No 79
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=130.53 Aligned_cols=84 Identities=30% Similarity=0.522 Sum_probs=76.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEE
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
......++|||+||+.++++++|+++|+.||.|++|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456899999999999999999999999999999999765 579999999999999999999999999999999
Q ss_pred eeccCCCCCC
Q 015450 344 SWGRSPSNKQ 353 (406)
Q Consensus 344 ~~~~~~~~~~ 353 (406)
.|++......
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 1x5u_A 90 NKASAHNKNL 99 (105)
T ss_dssp EETTTTSCCC
T ss_pred EECCCCCcCC
Confidence 9998766543
No 80
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=129.26 Aligned_cols=80 Identities=24% Similarity=0.323 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhccCCcEEEEEeeCC---CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 273 PNNTTVFVGNLDSIVTDEHLR----ELFSQYGQLVHVKIPAG---KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~----~~F~~~G~i~~v~i~~~---~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
...++|||+||+.++++++|+ ++|++||.|.+|.|..+ ++||||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356899999999999999999 99999999999999866 88999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 015450 346 GRSPSNK 352 (406)
Q Consensus 346 ~~~~~~~ 352 (406)
+++....
T Consensus 87 a~~~~~~ 93 (96)
T 2dgx_A 87 ATGASGP 93 (96)
T ss_dssp CCCSSCC
T ss_pred cCCCCCC
Confidence 9866543
No 81
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.2e-18 Score=131.59 Aligned_cols=84 Identities=29% Similarity=0.453 Sum_probs=75.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEE
Q 015450 269 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 342 (406)
Q Consensus 269 ~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 342 (406)
...+...++|||+||+.++++++|+++|+.||.|++|+|.++ ++||||+|.+.++|++|+..|++ .|+|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 344567899999999999999999999999999999999765 57999999999999999999998 89999999
Q ss_pred EeeccCCCCCC
Q 015450 343 LSWGRSPSNKQ 353 (406)
Q Consensus 343 v~~~~~~~~~~ 353 (406)
|+|++......
T Consensus 90 V~~a~~~~~~~ 100 (116)
T 2cqd_A 90 VNLAYLGAKPR 100 (116)
T ss_dssp EEESTTTCCCC
T ss_pred EEEcccCCCcc
Confidence 99998655433
No 82
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=5.7e-19 Score=144.67 Aligned_cols=133 Identities=17% Similarity=0.281 Sum_probs=74.4
Q ss_pred EEecCHHHHHHHHHHhcCcccc--CcceEecccCCCCccccc-----ccCCccccCCCCCCCceEEEcCCCCCCCHHHHH
Q 015450 221 VRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSAS-----YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLR 293 (406)
Q Consensus 221 v~f~~~~~a~~a~~~~~~~~~~--g~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~ 293 (406)
.+|.+.+++..++..+++.... |+.+...+........-. ...............++|||+||+..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6788889999999888876654 555555443221100000 000011123334567899999999999999999
Q ss_pred HHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCCCC
Q 015450 294 ELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353 (406)
Q Consensus 294 ~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 353 (406)
++|+.||.|.+|.|..+ +|||||+|.+.++|.+||..|||..|.|+.|+|.|++......
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999999765 6899999999999999999999999999999999998766544
No 83
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=131.01 Aligned_cols=83 Identities=28% Similarity=0.530 Sum_probs=75.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
.....++|||+|||.++++++|+++|+.||.|++|.|..+ +++|||+|.+.++|.+|++.||+..|+|+.|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999999764 6799999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 015450 345 WGRSPSNKQ 353 (406)
Q Consensus 345 ~~~~~~~~~ 353 (406)
|++......
T Consensus 88 ~a~~~~~~~ 96 (102)
T 1x5s_A 88 QAGKSSDNR 96 (102)
T ss_dssp EEECCCCCC
T ss_pred ECCCCCCCC
Confidence 999766544
No 84
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=2.2e-18 Score=130.10 Aligned_cols=82 Identities=23% Similarity=0.481 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCC---cEEEE
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGG---QNIRL 343 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g---~~l~v 343 (406)
....++|||+||+.++++++|+++|+.||.|++|.|..+ +++|||+|.+.++|.+|+..||+..|.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346899999999999999999999999999999999876 7899999999999999999999999988 99999
Q ss_pred eeccCCCCCC
Q 015450 344 SWGRSPSNKQ 353 (406)
Q Consensus 344 ~~~~~~~~~~ 353 (406)
.|++....+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999776544
No 85
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-19 Score=131.86 Aligned_cols=77 Identities=17% Similarity=0.299 Sum_probs=69.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCC-cEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhc-CCccCCcEEEEeec
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQYG-QLVHVKIPAG------KRCGFVQFADRSCAEEALRMLN-GTQLGGQNIRLSWG 346 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~G-~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~-g~~~~g~~l~v~~~ 346 (406)
+++|||+|||.++|+++|+++|+.|| .|++|+|.++ +|||||+|.+.++|.+|++.++ +..|+|+.|+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999998654 7899999999999999999874 56799999999999
Q ss_pred cCCCC
Q 015450 347 RSPSN 351 (406)
Q Consensus 347 ~~~~~ 351 (406)
+++.+
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86654
No 86
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=129.98 Aligned_cols=83 Identities=23% Similarity=0.431 Sum_probs=75.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
.....++|||+||+.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456899999999999999999999999999999999765 5799999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 015450 345 WGRSPSNKQ 353 (406)
Q Consensus 345 ~~~~~~~~~ 353 (406)
|++.+....
T Consensus 91 ~a~~~~~~~ 99 (103)
T 2cq0_A 91 WAKPSTNSG 99 (103)
T ss_dssp ESSCCCCSC
T ss_pred ECCCCCCCC
Confidence 998766543
No 87
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=1.2e-18 Score=125.43 Aligned_cols=76 Identities=28% Similarity=0.569 Sum_probs=71.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
+.+|||+|||.++++++|+++|+.||.|.++.+..+ +|+|||+|.+.++|.+|+..|||..|+|+.|+|+|++.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999765 78999999999999999999999999999999999986
Q ss_pred CC
Q 015450 349 PS 350 (406)
Q Consensus 349 ~~ 350 (406)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 88
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=126.51 Aligned_cols=79 Identities=25% Similarity=0.492 Sum_probs=73.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCC
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 350 (406)
.....++|||+||+.++++++|+++|+.||.|.+|.+.++ +|||+|.+.++|.+|+..|||..|+|+.|+|+|++...
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 3456789999999999999999999999999999999855 99999999999999999999999999999999998764
Q ss_pred C
Q 015450 351 N 351 (406)
Q Consensus 351 ~ 351 (406)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 89
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.7e-19 Score=132.73 Aligned_cols=78 Identities=27% Similarity=0.571 Sum_probs=73.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCC
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 349 (406)
....++|||+||+.++++++|+++|+.||.|.+|++.++++||||+|.+.++|.+|+..|||..|+|+.|+|+|++++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999999853
No 90
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=128.05 Aligned_cols=82 Identities=18% Similarity=0.344 Sum_probs=74.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
......++|||+||+.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456789999999999999999999999999999999765 4899999999999999999999999999999999
Q ss_pred eccCCCC
Q 015450 345 WGRSPSN 351 (406)
Q Consensus 345 ~~~~~~~ 351 (406)
|++++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9986654
No 91
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=1.8e-18 Score=132.87 Aligned_cols=84 Identities=25% Similarity=0.517 Sum_probs=75.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEE
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
......++|||+||+.++++++|+++|+.||.|++|+|..+ ++||||+|.+.++|++|+..||+..|+|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999765 479999999999999999999999999999999
Q ss_pred eeccCCCCCC
Q 015450 344 SWGRSPSNKQ 353 (406)
Q Consensus 344 ~~~~~~~~~~ 353 (406)
+|++++....
T Consensus 100 ~~a~~~~~~~ 109 (115)
T 2cpz_A 100 QLKRSKNDSK 109 (115)
T ss_dssp ECCCCSCCCC
T ss_pred EEcCCCCcCC
Confidence 9999766544
No 92
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.9e-18 Score=127.15 Aligned_cols=79 Identities=27% Similarity=0.427 Sum_probs=72.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccC--CcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQY--GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~--G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
.....++|||+||+.++++++|+++|+.| |.|.+|.+. +++|||+|.+.++|.+|+..||+..|+|+.|+|+|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 34567899999999999999999999999 999999886 56999999999999999999999999999999999987
Q ss_pred CCC
Q 015450 349 PSN 351 (406)
Q Consensus 349 ~~~ 351 (406)
...
T Consensus 89 ~~~ 91 (99)
T 2cpd_A 89 VDK 91 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 93
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=5.6e-19 Score=129.53 Aligned_cols=77 Identities=17% Similarity=0.362 Sum_probs=69.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCc--EEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCc----cCCc
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQ--LVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQ----LGGQ 339 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~--i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~----~~g~ 339 (406)
....++|||+||+.++|+++|+++|++||. |.+|++.++ ||||||+|.+.++|.+|++.|||.. |+||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345789999999999999999999999995 668888654 7899999999999999999999974 8999
Q ss_pred EEEEeeccC
Q 015450 340 NIRLSWGRS 348 (406)
Q Consensus 340 ~l~v~~~~~ 348 (406)
.|+|+||++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999985
No 94
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=132.29 Aligned_cols=79 Identities=23% Similarity=0.473 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
...++|||+||+.++++++|+++|+.||.|++|.|..+ ++||||+|.+.++|++|+..|||..|+|+.|+|+|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999875 4999999999999999999999999999999999998
Q ss_pred CCCC
Q 015450 348 SPSN 351 (406)
Q Consensus 348 ~~~~ 351 (406)
.+..
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6554
No 95
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.77 E-value=1.6e-18 Score=131.94 Aligned_cols=77 Identities=30% Similarity=0.553 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCC
Q 015450 273 PNNTTVFVGNLDSI-VTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351 (406)
Q Consensus 273 ~~~~~l~V~nlp~~-~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 351 (406)
...++|||+||+.+ +++++|+++|++||.|++|.| .+++|||+|.+.++|.+|+..||+..|+|+.|+|+|++.+..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 34689999999999 999999999999999999999 688999999999999999999999999999999999986544
No 96
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.2e-18 Score=125.91 Aligned_cols=80 Identities=24% Similarity=0.449 Sum_probs=73.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCC
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 351 (406)
....++|||+|| ++++++|+++|++||.|.+|.|.+.+++|||+|.+.++|.+|+..||+..|+|+.|+|.|++.+..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 346789999996 899999999999999999999999999999999999999999999999999999999999987655
Q ss_pred CC
Q 015450 352 KQ 353 (406)
Q Consensus 352 ~~ 353 (406)
..
T Consensus 90 ~~ 91 (97)
T 1x5p_A 90 LD 91 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 97
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=130.22 Aligned_cols=82 Identities=30% Similarity=0.429 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcc-CCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCc-cCCcEEEEe
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQ-YGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQ-LGGQNIRLS 344 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~-~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~-~~g~~l~v~ 344 (406)
....++|||+||+.++++++|+++|+. ||.|.+|.|..+ ++||||+|.+.++|.+|+..|++.. |+|+.|+|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 346789999999999999999999999 999999999765 7899999999999999999999999 999999999
Q ss_pred eccCCCCCC
Q 015450 345 WGRSPSNKQ 353 (406)
Q Consensus 345 ~~~~~~~~~ 353 (406)
+++.+....
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998666544
No 98
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=132.52 Aligned_cols=78 Identities=24% Similarity=0.375 Sum_probs=73.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCC
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 351 (406)
..++|||+||+.++++++|+++|++||.|.+|.|.+++++|||+|.+.++|.+|+..|||..|+|+.|+|+|++....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999986443
No 99
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.5e-18 Score=129.75 Aligned_cols=85 Identities=27% Similarity=0.488 Sum_probs=76.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhc------CCccC
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLN------GTQLG 337 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~------g~~~~ 337 (406)
......++|||+||+.++++++|+++|+.||.|.+|.|..+ ++||||+|.+.++|.+|+..|| +..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34456789999999999999999999999999999999744 7899999999999999999999 99999
Q ss_pred CcEEEEeeccCCCCCCC
Q 015450 338 GQNIRLSWGRSPSNKQA 354 (406)
Q Consensus 338 g~~l~v~~~~~~~~~~~ 354 (406)
|+.|+|.|++++.....
T Consensus 90 g~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAAS 106 (111)
T ss_dssp SCEEEEECCCCCCCCCC
T ss_pred CEEEEEEECCCCccCCC
Confidence 99999999997665443
No 100
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=1.4e-18 Score=135.81 Aligned_cols=82 Identities=23% Similarity=0.421 Sum_probs=75.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
.....++|||+||+.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3456789999999999999999999999999999999765 7899999999999999999999999999999999
Q ss_pred eccCCCCC
Q 015450 345 WGRSPSNK 352 (406)
Q Consensus 345 ~~~~~~~~ 352 (406)
|++.....
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99866554
No 101
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=1.6e-18 Score=125.48 Aligned_cols=75 Identities=27% Similarity=0.510 Sum_probs=70.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
...++|||+||+.++++++|+++|++||.|.+|.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|+|+|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999543 789999999999999999999999999999999998
Q ss_pred c
Q 015450 347 R 347 (406)
Q Consensus 347 ~ 347 (406)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 6
No 102
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=130.39 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=73.8
Q ss_pred CCCceEEE--cCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCcc-----CCcEEEEee
Q 015450 273 PNNTTVFV--GNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQL-----GGQNIRLSW 345 (406)
Q Consensus 273 ~~~~~l~V--~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~-----~g~~l~v~~ 345 (406)
..+++||| +||++++++++|+++|++||.|.+|.|..+|+||||+|.+.++|++|++.|||.+| .|+.|.|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 45788999 77999999999999999999999999999999999999999999999999999998 789999999
Q ss_pred ccCCCCC
Q 015450 346 GRSPSNK 352 (406)
Q Consensus 346 ~~~~~~~ 352 (406)
++.....
T Consensus 103 a~~~p~~ 109 (114)
T 2cq2_A 103 VEKVQWS 109 (114)
T ss_dssp ESCCCCS
T ss_pred cccCccc
Confidence 9865543
No 103
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.5e-18 Score=128.06 Aligned_cols=80 Identities=31% Similarity=0.516 Sum_probs=72.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
....++|||+||+.++++++|+++|+.|| |++|.|..+ ++||||+|.+.++|.+|| .||+..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34679999999999999999999999999 999999654 679999999999999999 899999999999999
Q ss_pred eccCCCCCC
Q 015450 345 WGRSPSNKQ 353 (406)
Q Consensus 345 ~~~~~~~~~ 353 (406)
+++.+....
T Consensus 90 ~a~~~~~~~ 98 (104)
T 1wi8_A 90 VADQAQDKD 98 (104)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 998766543
No 104
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=128.36 Aligned_cols=82 Identities=23% Similarity=0.450 Sum_probs=77.7
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecc
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 250 (406)
...++|||+|||.++++++|+++| +.||.|.+++++.++.+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLF-SSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345789999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 015450 251 ATN 253 (406)
Q Consensus 251 ~~~ 253 (406)
+.+
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 864
No 105
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-17 Score=128.05 Aligned_cols=82 Identities=30% Similarity=0.372 Sum_probs=74.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
.....++|||+||+.++++++|+++|+.||.|++|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456789999999999999999999999999999999765 78999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 015450 346 GRSPSNK 352 (406)
Q Consensus 346 ~~~~~~~ 352 (406)
++....+
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9865443
No 106
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=2.4e-18 Score=127.48 Aligned_cols=77 Identities=26% Similarity=0.480 Sum_probs=72.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
+++|||+||+.++++++|+++|+.||.|.+|.+..+ +|+|||+|.+.++|.+|+..|+|..|+|+.|+|+|++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 579999999999999999999999999999999755 78999999999999999999999999999999999987
Q ss_pred CCC
Q 015450 349 PSN 351 (406)
Q Consensus 349 ~~~ 351 (406)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 653
No 107
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=125.59 Aligned_cols=76 Identities=30% Similarity=0.616 Sum_probs=70.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
..++|||+||+.++++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+..|||..|+|+.|+|+|++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 5689999999999999999999999999999999765 6899999999999999999999999999999999998
Q ss_pred CC
Q 015450 348 SP 349 (406)
Q Consensus 348 ~~ 349 (406)
.+
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 54
No 108
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.2e-19 Score=129.25 Aligned_cols=79 Identities=25% Similarity=0.456 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCc-EEEEEeeCCCeEEEEEeCChHHHHHHHHHhcC-CccCCcEEEEeeccCCC
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQ-LVHVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQNIRLSWGRSPS 350 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~-i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g-~~~~g~~l~v~~~~~~~ 350 (406)
...++|||+||+.++++++|+++|++||. |..+.+ ..+++|||+|.+.++|.+|+..||| ..|+|+.|+|+|++++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 45789999999999999999999999999 555554 5689999999999999999999999 99999999999998765
Q ss_pred CC
Q 015450 351 NK 352 (406)
Q Consensus 351 ~~ 352 (406)
.+
T Consensus 85 ~~ 86 (93)
T 2cqh_A 85 LR 86 (93)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 109
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=125.96 Aligned_cols=78 Identities=35% Similarity=0.539 Sum_probs=72.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEE
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
......++|||+|||.++++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|++.||+..|+|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34456789999999999999999999999999999999764 679999999999999999999999999999999
Q ss_pred eecc
Q 015450 344 SWGR 347 (406)
Q Consensus 344 ~~~~ 347 (406)
+|+|
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9986
No 110
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=3.4e-18 Score=129.26 Aligned_cols=84 Identities=20% Similarity=0.428 Sum_probs=75.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCcc---CCcE
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQL---GGQN 340 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~---~g~~ 340 (406)
......++|||+||+.++++++|+++|++||.|.+|.|..+ +++|||+|.+.++|.+|+..||+..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34456899999999999999999999999999999999764 68999999999999999999999997 8999
Q ss_pred EEEeeccCCCCCC
Q 015450 341 IRLSWGRSPSNKQ 353 (406)
Q Consensus 341 l~v~~~~~~~~~~ 353 (406)
|+|+|++......
T Consensus 88 l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 88 IQVKPADSESRGG 100 (106)
T ss_dssp CEEEECCCCSCCC
T ss_pred EEEEECCcccccC
Confidence 9999998766543
No 111
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=1e-18 Score=131.81 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=70.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCC-cEEEEEee--CCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCC
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYG-QLVHVKIP--AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G-~i~~v~i~--~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 350 (406)
..++|||+||++++++++|+++|+.|| .|..+.|. +.+|||||+|.+.++|++||+.|||..|+|+.|+|++++.+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 468999999999999999999999999 99999995 458999999999999999999999999999999999987543
No 112
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.2e-18 Score=129.66 Aligned_cols=79 Identities=22% Similarity=0.378 Sum_probs=73.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHH---HHhccCCcEEEEEeeCC---------CeEEEEEeCChHHHHHHHHHhcCCccCCc
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLR---ELFSQYGQLVHVKIPAG---------KRCGFVQFADRSCAEEALRMLNGTQLGGQ 339 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~---~~F~~~G~i~~v~i~~~---------~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 339 (406)
....++|||+|||.++++++|+ ++|++||.|.+|.|.++ +|+|||+|.+.++|.+|++.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 99999999999999765 37999999999999999999999999999
Q ss_pred EEEEeeccCCC
Q 015450 340 NIRLSWGRSPS 350 (406)
Q Consensus 340 ~l~v~~~~~~~ 350 (406)
.|+|+|++++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998665
No 113
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.6e-18 Score=128.41 Aligned_cols=79 Identities=27% Similarity=0.476 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCC
Q 015450 272 DPNNTTVFVGNLDS-IVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350 (406)
Q Consensus 272 ~~~~~~l~V~nlp~-~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 350 (406)
....++|||+||+. ++++++|+++|+.||.|.+|.+. +++|||+|.+.++|.+|+..|||..+.|+.|+|+|++...
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 34688999999998 99999999999999999999996 7899999999999999999999999999999999998665
Q ss_pred CC
Q 015450 351 NK 352 (406)
Q Consensus 351 ~~ 352 (406)
..
T Consensus 85 ~~ 86 (96)
T 2kvi_A 85 RP 86 (96)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 114
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.7e-18 Score=130.08 Aligned_cols=83 Identities=25% Similarity=0.464 Sum_probs=75.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEE--------EEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCc
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLV--------HVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQ 335 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~--------~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~ 335 (406)
......++|||+||+.++++++|+++|+.||.|. .|.|..+ ++||||+|.+.++|.+|+..||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3445789999999999999999999999999998 6888655 6899999999999999999999999
Q ss_pred cCCcEEEEeeccCCCCC
Q 015450 336 LGGQNIRLSWGRSPSNK 352 (406)
Q Consensus 336 ~~g~~l~v~~~~~~~~~ 352 (406)
|+|+.|+|+|++.+...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999876553
No 115
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=2.5e-18 Score=129.91 Aligned_cols=81 Identities=25% Similarity=0.519 Sum_probs=73.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCC
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 349 (406)
......++|||+||+.++++++|+++|++||.|++|.+. +|+|||+|.+.++|.+|+..|||..|+|+.|+|+|++.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 345568999999999999999999999999999999998 899999999999999999999999999999999999876
Q ss_pred CCC
Q 015450 350 SNK 352 (406)
Q Consensus 350 ~~~ 352 (406)
..+
T Consensus 104 ~~r 106 (108)
T 2jvo_A 104 AKR 106 (108)
T ss_dssp C--
T ss_pred CCC
Confidence 543
No 116
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=2.9e-18 Score=126.09 Aligned_cols=79 Identities=33% Similarity=0.534 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
...++|||+|||.++++++|+++|+.||.|.+|.|.++ +++|||+|.+.++|.+|+..||+..|+|+.|+|+|++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 45789999999999999999999999999999999763 68999999999999999999999999999999999986
Q ss_pred CCC
Q 015450 349 PSN 351 (406)
Q Consensus 349 ~~~ 351 (406)
...
T Consensus 86 ~~~ 88 (92)
T 2dgv_A 86 ASG 88 (92)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 117
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=124.32 Aligned_cols=77 Identities=34% Similarity=0.600 Sum_probs=71.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeC-------CCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-------GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~-------~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
..++|||+||+.++++++|+++|+.||.|.+|.+.. .+++|||+|.+.++|.+|+..|||..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468899999999999999999999999999999854 4789999999999999999999999999999999999
Q ss_pred cCCC
Q 015450 347 RSPS 350 (406)
Q Consensus 347 ~~~~ 350 (406)
+++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 118
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.7e-18 Score=125.80 Aligned_cols=79 Identities=34% Similarity=0.439 Sum_probs=72.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEE
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
......++|||+||+.++++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456799999999999999999999999999999999644 689999999999999999999999999999999
Q ss_pred eeccC
Q 015450 344 SWGRS 348 (406)
Q Consensus 344 ~~~~~ 348 (406)
+|+++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99874
No 119
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=8.9e-18 Score=126.16 Aligned_cols=80 Identities=21% Similarity=0.390 Sum_probs=72.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
.....++|||+||+.++++++|+++|+.|| |++|.|.++ +|||||+|.+.++|.+|+ .||+..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345679999999999999999999999997 999999755 579999999999999999 899999999999999
Q ss_pred eccCCCCC
Q 015450 345 WGRSPSNK 352 (406)
Q Consensus 345 ~~~~~~~~ 352 (406)
|++.....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99866543
No 120
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=126.51 Aligned_cols=78 Identities=41% Similarity=0.556 Sum_probs=72.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
.....++|||+||+.++++++|+++|+.||.|++|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 3456789999999999999999999999999999999765 68999999999999999999999999999999999
Q ss_pred ccC
Q 015450 346 GRS 348 (406)
Q Consensus 346 ~~~ 348 (406)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 121
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=5.8e-18 Score=125.35 Aligned_cols=78 Identities=26% Similarity=0.454 Sum_probs=72.0
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCC
Q 015450 271 DDPNNTTVFVGNLDS-IVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~-~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 349 (406)
....+++|||+||+. ++++++|+++|+.||.|.+|.+. +|+|||+|.+.++|.+|+..|||..|+|+.|+|+|++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 345689999999998 99999999999999999999995 789999999999999999999999999999999999864
Q ss_pred C
Q 015450 350 S 350 (406)
Q Consensus 350 ~ 350 (406)
.
T Consensus 96 ~ 96 (97)
T 2xnq_A 96 A 96 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 122
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=128.92 Aligned_cols=76 Identities=33% Similarity=0.492 Sum_probs=72.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCC
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 351 (406)
++|||+||+.++++++|+++|++||.|.+|.+..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+|++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999999987 99999999999999999999999999999999999987664
No 123
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.8e-18 Score=130.07 Aligned_cols=80 Identities=28% Similarity=0.495 Sum_probs=74.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
......++|||+||+.++++++|+++|++||.|++|.+.++ +|+|||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34456899999999999999999999999999999999766 78999999999999999999999999999999999
Q ss_pred ccCC
Q 015450 346 GRSP 349 (406)
Q Consensus 346 ~~~~ 349 (406)
++.+
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9864
No 124
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=5.4e-18 Score=132.33 Aligned_cols=81 Identities=31% Similarity=0.446 Sum_probs=74.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEE
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
......++|||+||+.++++++|+++|+.||.|++|+|..+ +|+|||+|.+.++|++|+..|+|..|+|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999754 689999999999999999999999999999999
Q ss_pred eeccCCC
Q 015450 344 SWGRSPS 350 (406)
Q Consensus 344 ~~~~~~~ 350 (406)
+|++.+.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998654
No 125
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.8e-18 Score=127.99 Aligned_cols=79 Identities=24% Similarity=0.445 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
....++|||+||+.++++++|+++|+.||.|.+|.|..+ +|+|||+|.+.++|.+|+..|||..|+|+.|+|+|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 346789999999999999999999999999999999754 68999999999999999999999999999999999
Q ss_pred ccCCC
Q 015450 346 GRSPS 350 (406)
Q Consensus 346 ~~~~~ 350 (406)
++.+.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98654
No 126
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=4.7e-18 Score=130.13 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=67.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcE-----EEEeeccC
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQN-----IRLSWGRS 348 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~-----l~v~~~~~ 348 (406)
..++|||+||+.++++++|+++|++||.|++|.|..+ +||||+|.+.++|++||+.||+..|+|+. |+|..++.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 4689999999999999999999999999999999888 99999999999999999999999999998 77777665
Q ss_pred CC
Q 015450 349 PS 350 (406)
Q Consensus 349 ~~ 350 (406)
..
T Consensus 94 ~~ 95 (115)
T 3beg_B 94 RS 95 (115)
T ss_dssp --
T ss_pred CC
Confidence 43
No 127
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=2.8e-18 Score=135.19 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=82.7
Q ss_pred ceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcce
Q 015450 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203 (406)
Q Consensus 124 g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~ 203 (406)
-++|++|++...+..|++.+++....++... .+ ..........++|||+||++++++++|+++| +.||.|..
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~---~~----~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~i~~ 76 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGSM---SY----GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVF-EKYGRVGD 76 (135)
T ss_dssp ------------------------------C---CS----CCSCSSGGGCCCEEEECCCSSCHHHHHHHHH-GGGSCCSE
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCCC---Cc----CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEE
Confidence 3678889999999999998888665443211 11 1222334567899999999999999999999 89999999
Q ss_pred eEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCCc
Q 015450 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256 (406)
Q Consensus 204 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~ 256 (406)
+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.....
T Consensus 77 v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 77 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999988999999999999999999999999999999999999999987654
No 128
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=124.42 Aligned_cols=81 Identities=26% Similarity=0.325 Sum_probs=70.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEee--CCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP--AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~--~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
.....++|||+||+.++++++|+++|++||.|.-+... +.+++|||+|.+.++|++|+..||+..|+|+.|+|+|++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 44568999999999999999999999999988322221 2378999999999999999999999999999999999987
Q ss_pred CCC
Q 015450 349 PSN 351 (406)
Q Consensus 349 ~~~ 351 (406)
+..
T Consensus 91 ~~~ 93 (101)
T 2fc9_A 91 RGS 93 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 129
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=6.9e-18 Score=130.22 Aligned_cols=78 Identities=26% Similarity=0.505 Sum_probs=72.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEE
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
......++|||+||+.++++++|+++|++||.|++|+|.++ ++||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44556899999999999999999999999999999999755 689999999999999999999999999999999
Q ss_pred eecc
Q 015450 344 SWGR 347 (406)
Q Consensus 344 ~~~~ 347 (406)
+|+|
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9985
No 130
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=7.1e-18 Score=128.39 Aligned_cols=81 Identities=21% Similarity=0.428 Sum_probs=74.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
.....++|||+||+.++++++|+++|+.||.|.+|.|..+ +|+|||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999755 6899999999999999999999999999999999
Q ss_pred eccCCCC
Q 015450 345 WGRSPSN 351 (406)
Q Consensus 345 ~~~~~~~ 351 (406)
|++.+..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9986553
No 131
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.2e-18 Score=127.53 Aligned_cols=83 Identities=33% Similarity=0.481 Sum_probs=75.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEE
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
......++|||+||+.++++++|+++|+.||.|++|.|.++ ++||||+|.+.++|.+|+.. ++..|+|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34557899999999999999999999999999999999765 58999999999999999998 999999999999
Q ss_pred eeccCCCCCC
Q 015450 344 SWGRSPSNKQ 353 (406)
Q Consensus 344 ~~~~~~~~~~ 353 (406)
++++++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 2dh8_A 90 KPCTPRGMQP 99 (105)
T ss_dssp CCSCCSSCCT
T ss_pred EEccCCCCCC
Confidence 9998766543
No 132
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=9.9e-18 Score=126.70 Aligned_cols=80 Identities=28% Similarity=0.603 Sum_probs=73.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
.....++|||+||+.++++++|+++|+.||.|.+|.|.++ +|+|||+|.+.++|.+|++.|+|..|+|+.|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999754 6899999999999999999999999999999999
Q ss_pred eccCCC
Q 015450 345 WGRSPS 350 (406)
Q Consensus 345 ~~~~~~ 350 (406)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998654
No 133
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-17 Score=130.97 Aligned_cols=83 Identities=28% Similarity=0.506 Sum_probs=74.9
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
....++|||+||+.++++++|+++|+.||.|++|++++++.+++++|||||+|.+.++|.+|++.||+..+.++ .+++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v 116 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK--RLKV 116 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC--EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe--EEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999665 5555
Q ss_pred eeccc
Q 015450 158 NWASF 162 (406)
Q Consensus 158 ~~~~~ 162 (406)
.++..
T Consensus 117 ~~a~~ 121 (139)
T 1u6f_A 117 ALAAS 121 (139)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 55544
No 134
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=8.1e-18 Score=127.30 Aligned_cols=85 Identities=11% Similarity=0.169 Sum_probs=80.3
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecc
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 250 (406)
.+.++|||+||++++++++|+++| +.||.|.++.++.+..+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F-~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMC-RKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHH-HhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 457899999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCc
Q 015450 251 ATNKKT 256 (406)
Q Consensus 251 ~~~~~~ 256 (406)
+.....
T Consensus 83 a~~~~~ 88 (110)
T 3s8s_A 83 DIKGQQ 88 (110)
T ss_dssp CSTTHH
T ss_pred CCCCcH
Confidence 876543
No 135
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=2.9e-18 Score=125.27 Aligned_cols=84 Identities=12% Similarity=0.264 Sum_probs=77.1
Q ss_pred CceEEEcCCCccccHHHHHHHHHhhCC-CcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHh-cCccccCcceEecc
Q 015450 173 DHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRPMRIGP 250 (406)
Q Consensus 173 ~~~l~v~~lp~~~~~~~l~~~f~~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~-~~~~~~g~~i~v~~ 250 (406)
+++|||+|||.++++++|+++| +.|| .|.+++++.++.+++++|||||+|.+.++|.+|++.+ ++..+.|+.|+|.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F-~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQL-QSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHH-HHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 4689999999999999999999 8999 8999999999999999999999999999999999877 45679999999999
Q ss_pred cCCCCcc
Q 015450 251 ATNKKTV 257 (406)
Q Consensus 251 ~~~~~~~ 257 (406)
+.++...
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9876543
No 136
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=123.36 Aligned_cols=80 Identities=24% Similarity=0.479 Sum_probs=70.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEE-EEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCC
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLV-HVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~-~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 350 (406)
....++|||+||+.++++++|+++|+.||.|. .+...+.++||||+|.+.++|.+|+..|||..|+|+.|+|+|++++.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 34578999999999999999999999999985 33334668999999999999999999999999999999999998764
Q ss_pred C
Q 015450 351 N 351 (406)
Q Consensus 351 ~ 351 (406)
.
T Consensus 96 ~ 96 (97)
T 2e5j_A 96 D 96 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 137
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=9.5e-18 Score=125.09 Aligned_cols=79 Identities=27% Similarity=0.505 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEE-EEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcE----
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLV-HVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQN---- 340 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~-~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~---- 340 (406)
....++|||+||+.++++++|+++|++||.|. +|+|.++ ++||||+|.+.++|++|++.|||..|+|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34678999999999999999999999999999 9999765 489999999999999999999999999999
Q ss_pred EEEeeccCCC
Q 015450 341 IRLSWGRSPS 350 (406)
Q Consensus 341 l~v~~~~~~~ 350 (406)
|+|+|++...
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998554
No 138
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.5e-18 Score=126.12 Aligned_cols=75 Identities=16% Similarity=0.314 Sum_probs=69.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
...++|||+|||.++|+++|+++|+.||.|.+|.|.++ +|||||+|.+.++|.+|+. +++..|+|+.|+|.|++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 35689999999999999999999999999999999764 7999999999999999999 89999999999999876
Q ss_pred C
Q 015450 348 S 348 (406)
Q Consensus 348 ~ 348 (406)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 139
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=129.38 Aligned_cols=79 Identities=18% Similarity=0.412 Sum_probs=72.0
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhccCCcEEEEEeeC---CCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 273 PNNTTVFVGNLDSIVTDEHLR----ELFSQYGQLVHVKIPA---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~----~~F~~~G~i~~v~i~~---~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
..+++|||+||++++++++|+ ++|++||.|.+|.+.+ .+|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 457899999999999999876 6999999999999864 489999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015450 346 GRSPSN 351 (406)
Q Consensus 346 ~~~~~~ 351 (406)
++.+..
T Consensus 107 a~~~~~ 112 (127)
T 2a3j_A 107 SETPQS 112 (127)
T ss_dssp CCCCCH
T ss_pred ccCcch
Confidence 986654
No 140
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.3e-17 Score=121.77 Aligned_cols=74 Identities=26% Similarity=0.467 Sum_probs=69.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
.++|||+|||.++++++|+++|+.||.|.++.+..+ +++|||+|.+.++|.+|+ .||+..|+|+.|+|+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 578999999999999999999999999999999754 789999999999999999 8999999999999999986
Q ss_pred C
Q 015450 349 P 349 (406)
Q Consensus 349 ~ 349 (406)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 141
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=124.08 Aligned_cols=78 Identities=27% Similarity=0.467 Sum_probs=71.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEE--------EEeeCC------CeEEEEEeCChHHHHHHHHHhcCCc
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH--------VKIPAG------KRCGFVQFADRSCAEEALRMLNGTQ 335 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~--------v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~ 335 (406)
......++|||+||+.++++++|+++|++||.|.+ |.+..+ +|+|||+|.+.++|.+|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34456799999999999999999999999999999 888654 6899999999999999999999999
Q ss_pred cCCcEEEEeecc
Q 015450 336 LGGQNIRLSWGR 347 (406)
Q Consensus 336 ~~g~~l~v~~~~ 347 (406)
|+|+.|+|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999975
No 142
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=2.4e-17 Score=127.16 Aligned_cols=80 Identities=25% Similarity=0.346 Sum_probs=73.1
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.....++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..+.++.+.|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44568999999999999999999999999999999999998899999999999999999999999999999976555443
No 143
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=1.8e-17 Score=125.45 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=72.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
.....++|||+||+.++++++|+++|+.||.|++|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999999999999754 78999999999999999999999999999999999
Q ss_pred cc
Q 015450 346 GR 347 (406)
Q Consensus 346 ~~ 347 (406)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 144
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=126.37 Aligned_cols=82 Identities=22% Similarity=0.482 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcE----EEEEeeC--CCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQL----VHVKIPA--GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i----~~v~i~~--~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
...+++|||+||+.++++++|+++|+.||.| ..+++.. .++||||+|.+.++|.+|+..||+..|+|+.|+|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467899999999999999999999999998 5666553 479999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 015450 346 GRSPSNKQ 353 (406)
Q Consensus 346 ~~~~~~~~ 353 (406)
++......
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 99766544
No 145
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=123.44 Aligned_cols=87 Identities=44% Similarity=0.858 Sum_probs=78.2
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhccccee-EEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcc-
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN- 154 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~-~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~- 154 (406)
.....++|||+|||.++++++|+++|++||.|. +|++++++.+++++|||||+|.+.++|++|++.||+..+.++...
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345689999999999999999999999999999 999999999999999999999999999999999999999877633
Q ss_pred -eeeeecccC
Q 015450 155 -FRLNWASFG 163 (406)
Q Consensus 155 -~~~~~~~~~ 163 (406)
+++.|+...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 777776543
No 146
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=8.5e-18 Score=123.19 Aligned_cols=83 Identities=13% Similarity=0.293 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCC--cceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCc----cccC
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPS--TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV----FCST 243 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~--v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~----~~~g 243 (406)
.....+|||+||++++|+++|+++| +.||. +.++++++|+.+++++|||||+|.+.++|.+|++.||+. .++|
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F-~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTAL-SPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHS-TTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHH-HhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4456799999999999999999999 89995 678999999999999999999999999999999999986 4899
Q ss_pred cceEecccCC
Q 015450 244 RPMRIGPATN 253 (406)
Q Consensus 244 ~~i~v~~~~~ 253 (406)
+.|.|+++..
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999864
No 147
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=3.2e-17 Score=125.76 Aligned_cols=86 Identities=23% Similarity=0.305 Sum_probs=76.1
Q ss_pred CCCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcce
Q 015450 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (406)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~ 155 (406)
......++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+..+.++ .+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l 97 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK--RL 97 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE--EC
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE--EE
Confidence 3445678999999999999999999999999999999999998999999999999999999999999999999654 55
Q ss_pred eeeecccC
Q 015450 156 RLNWASFG 163 (406)
Q Consensus 156 ~~~~~~~~ 163 (406)
++.++...
T Consensus 98 ~V~~a~~~ 105 (115)
T 2cpz_A 98 KVQLKRSK 105 (115)
T ss_dssp EEECCCCS
T ss_pred EEEEcCCC
Confidence 55555443
No 148
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.4e-17 Score=121.89 Aligned_cols=82 Identities=20% Similarity=0.346 Sum_probs=72.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEE
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
......++|||+||+.++++++|+++|+.||.|++|.|..+ +|||||+|.+.++|.+|+. ++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999665 5799999999999999999 477899999999
Q ss_pred eeccCCCCCC
Q 015450 344 SWGRSPSNKQ 353 (406)
Q Consensus 344 ~~~~~~~~~~ 353 (406)
+|++.+....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cqg_A 88 KLPNSKQSQD 97 (103)
T ss_dssp ECCCTTCCCC
T ss_pred EecCCCCcCC
Confidence 9998766543
No 149
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3e-17 Score=124.69 Aligned_cols=80 Identities=21% Similarity=0.393 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCc-EEEEEee-------CCCeEEEEEeCChHHHHHHHHHhc--CCccCCcEEE
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQ-LVHVKIP-------AGKRCGFVQFADRSCAEEALRMLN--GTQLGGQNIR 342 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~-i~~v~i~-------~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~l~ 342 (406)
...++|||+||+.++++++|+++|+.||. |.+|.+. +.+|||||+|.+.++|.+|+..|+ +..|+|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999998 9999997 458999999999999999999996 5899999999
Q ss_pred EeeccCCCCC
Q 015450 343 LSWGRSPSNK 352 (406)
Q Consensus 343 v~~~~~~~~~ 352 (406)
|+|+++....
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999876553
No 150
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=1.5e-17 Score=120.91 Aligned_cols=76 Identities=18% Similarity=0.350 Sum_probs=71.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCC
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 350 (406)
..++|||+|||.++++++|+++|++| .|.++.+.+.+|+|||+|.+.++|.+|+..|||..++|+.|+|+|+....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 46889999999999999999999999 99999998889999999999999999999999999999999999987544
No 151
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=122.22 Aligned_cols=79 Identities=14% Similarity=0.310 Sum_probs=71.9
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeE--------EEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCC
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA--------VKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~--------~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~ 149 (406)
+...++|||+|||.++++++|+++|++||.|.+ |+++.++.+|+++|||||+|.+.++|.+|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345789999999999999999999999999999 999999989999999999999999999999999999997
Q ss_pred CCCccee
Q 015450 150 NGEQNFR 156 (406)
Q Consensus 150 ~~~~~~~ 156 (406)
++.+.|+
T Consensus 90 g~~l~V~ 96 (99)
T 2la6_A 90 GNPIKVS 96 (99)
T ss_dssp SSBCEEE
T ss_pred CcEEEEE
Confidence 6544443
No 152
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=1.4e-17 Score=123.72 Aligned_cols=79 Identities=25% Similarity=0.553 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhccCCcEEEEEee---CCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 273 PNNTTVFVGNLDSIVTDEHLR----ELFSQYGQLVHVKIP---AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~----~~F~~~G~i~~v~i~---~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
..+++|||+||+.++++++|+ ++|++||.|.+|.+. ..+|+|||+|.+.++|.+|+..|||..|+|+.|+|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 467899999999999999999 999999999999997 3489999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015450 346 GRSPSN 351 (406)
Q Consensus 346 ~~~~~~ 351 (406)
++....
T Consensus 86 a~~~~~ 91 (97)
T 1nu4_A 86 AKTDSD 91 (97)
T ss_dssp CSSCCT
T ss_pred ccCCCc
Confidence 987653
No 153
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=120.60 Aligned_cols=82 Identities=26% Similarity=0.522 Sum_probs=73.9
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
...++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+..+.++. +++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP--MRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC--CEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE--EEEE
Confidence 45789999999999999999999999999999999999989999999999999999999999999999997655 5555
Q ss_pred eccc
Q 015450 159 WASF 162 (406)
Q Consensus 159 ~~~~ 162 (406)
++..
T Consensus 81 ~a~~ 84 (95)
T 2dnz_A 81 HVTE 84 (95)
T ss_dssp ESSC
T ss_pred Eccc
Confidence 5543
No 154
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.9e-17 Score=121.93 Aligned_cols=81 Identities=25% Similarity=0.405 Sum_probs=69.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEee---CCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP---AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~---~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
.....++|||+||+.++++++|+++|+.|+.|.-+... ..++||||+|.+.++|.+|+..||+..|+|+.|+|+|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 34567999999999999999999999998755444332 126899999999999999999999999999999999998
Q ss_pred CCCC
Q 015450 348 SPSN 351 (406)
Q Consensus 348 ~~~~ 351 (406)
++..
T Consensus 91 ~~~~ 94 (102)
T 2fc8_A 91 PKGE 94 (102)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6554
No 155
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.7e-17 Score=122.73 Aligned_cols=85 Identities=28% Similarity=0.461 Sum_probs=75.7
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.....++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.|++..+.++ .++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 88 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK--PIR 88 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC--BCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe--EEE
Confidence 445689999999999999999999999999999999999988999999999999999999999999999998664 555
Q ss_pred eeecccC
Q 015450 157 LNWASFG 163 (406)
Q Consensus 157 ~~~~~~~ 163 (406)
+.++...
T Consensus 89 v~~a~~~ 95 (105)
T 1x5u_A 89 VNKASAH 95 (105)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 5555443
No 156
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=3.9e-17 Score=123.42 Aligned_cols=87 Identities=20% Similarity=0.369 Sum_probs=77.0
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCC-CCCCcce
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM-PNGEQNF 155 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~-~~~~~~~ 155 (406)
.....++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .+....+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 445688999999999999999999999999999999999998999999999999999999999999999775 4445667
Q ss_pred eeeecccC
Q 015450 156 RLNWASFG 163 (406)
Q Consensus 156 ~~~~~~~~ 163 (406)
++.++...
T Consensus 89 ~v~~a~~~ 96 (106)
T 2dgp_A 89 QVKPADSE 96 (106)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 77766544
No 157
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=9.4e-18 Score=135.27 Aligned_cols=78 Identities=21% Similarity=0.472 Sum_probs=70.3
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhccc--ceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTG--EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
...++|||+||++++|+++|+++|+.|| .|.+|+++.++.+|+++|||||+|.+.++|++||+.||+..|.++.+.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4578999999999999999999999999 99999999999999999999999999999999999999999976554444
No 158
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.2e-18 Score=122.67 Aligned_cols=75 Identities=27% Similarity=0.402 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
...++|||+|||.++++++|+++|+.||.|.+|.|..+ +|+|||+|.+.++|.+|++.|||..|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35789999999999999999999999999999999765 689999999999999999999999999999999886
Q ss_pred c
Q 015450 347 R 347 (406)
Q Consensus 347 ~ 347 (406)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 159
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=7.9e-18 Score=132.21 Aligned_cols=83 Identities=18% Similarity=0.372 Sum_probs=73.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEE--EEeeCC------CeEEEEEeCChHHHHHHHHHhcCC----ccC
Q 015450 270 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH--VKIPAG------KRCGFVQFADRSCAEEALRMLNGT----QLG 337 (406)
Q Consensus 270 ~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~--v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~----~~~ 337 (406)
......++|||+||++++++++|+++|++||.|.. |+|.++ ||||||+|.+. +|.+|+..|||. .|+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34456789999999999999999999999999966 888655 68999999999 999999999999 999
Q ss_pred CcEEEEeeccCCCCCC
Q 015450 338 GQNIRLSWGRSPSNKQ 353 (406)
Q Consensus 338 g~~l~v~~~~~~~~~~ 353 (406)
|+.|+|+|+++.....
T Consensus 97 gr~l~V~~a~~~~~~~ 112 (131)
T 2m2b_A 97 GKTINVEFAKGSKRDM 112 (131)
T ss_dssp GCCCCCEECCCSCCCC
T ss_pred CEEEEEEECCCCCCCC
Confidence 9999999998765443
No 160
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=4.7e-17 Score=122.95 Aligned_cols=85 Identities=24% Similarity=0.500 Sum_probs=75.5
Q ss_pred CCCCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcc
Q 015450 75 QGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (406)
Q Consensus 75 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~ 154 (406)
+......++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|.+|++.+++..+.++.+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l- 98 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM- 98 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC-
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE-
Confidence 3445668899999999999999999999999999999999999899999999999999999999999999999976554
Q ss_pred eeeeecc
Q 015450 155 FRLNWAS 161 (406)
Q Consensus 155 ~~~~~~~ 161 (406)
++.++.
T Consensus 99 -~V~~a~ 104 (108)
T 2jrs_A 99 -KVGHVT 104 (108)
T ss_dssp -EEECSC
T ss_pred -EEEEcc
Confidence 444443
No 161
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=2.9e-17 Score=131.03 Aligned_cols=79 Identities=23% Similarity=0.329 Sum_probs=71.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeC--CCeEEEEEeCChHHHHHHHHHhcCCccCC--cEEEEeeccCC
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA--GKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSP 349 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~--~~g~afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~~ 349 (406)
...+|||+||++.+|+++|+++|++||.|++|.|.. .++||||+|.+.++|++|++.|||..|.| +.|+|+|++.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 456789999999999999999999999999999853 36799999999999999999999999955 99999999976
Q ss_pred CCC
Q 015450 350 SNK 352 (406)
Q Consensus 350 ~~~ 352 (406)
...
T Consensus 125 ~l~ 127 (164)
T 1sjr_A 125 SLN 127 (164)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 162
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=9.1e-17 Score=123.02 Aligned_cols=77 Identities=18% Similarity=0.266 Sum_probs=69.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeE-EEEEeCChHHHHHHHHHhcCCccCC--cEEEEeeccCCCCC
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC-GFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNK 352 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~-afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~~~~~ 352 (406)
..|||+||++.+++++|+++|++||.|++|.|....|| |||+|.+.++|.+|++.|||..|.| +.|+|.|++.....
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l~ 105 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 105 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCCC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcce
Confidence 34679999999999999999999999999998665686 9999999999999999999999987 69999999977643
No 163
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=126.93 Aligned_cols=79 Identities=20% Similarity=0.393 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
...++|||+||+.++++++|+++|+.||.|.+|.|..+ +|||||+|.+.++|.+||.. ++..|+|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 34689999999999999999999999999999999765 68999999999999999998 999999999999999
Q ss_pred cCCCCC
Q 015450 347 RSPSNK 352 (406)
Q Consensus 347 ~~~~~~ 352 (406)
+++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 876653
No 164
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=124.51 Aligned_cols=80 Identities=24% Similarity=0.340 Sum_probs=70.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeC------CCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA------GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~------~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
.....++|||+|||.++++++|+++|+.||.|.++.+.. .+++|||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345678999999999999999999999999997665543 27899999999999999999999999999999999
Q ss_pred eccCCC
Q 015450 345 WGRSPS 350 (406)
Q Consensus 345 ~~~~~~ 350 (406)
+++.+.
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 988543
No 165
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4e-17 Score=121.81 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=69.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
.....++|||+|||+++|+++|+++|+.||.| +|.|..+ +|||||+|.+.++|++||+ +|+..|+||.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34567899999999999999999999999955 8888654 6899999999999999995 799999999999999
Q ss_pred ccCCC
Q 015450 346 GRSPS 350 (406)
Q Consensus 346 ~~~~~ 350 (406)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87544
No 166
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.5e-18 Score=127.66 Aligned_cols=78 Identities=33% Similarity=0.595 Sum_probs=72.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
..++|||+||+.++++++|+++|+.||.|.+|.+..+ +|+|||+|.+.++|.+|+..|||..|+|+.|+|+|++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4689999999999999999999999999999999754 6899999999999999999999999999999999998
Q ss_pred CCCC
Q 015450 348 SPSN 351 (406)
Q Consensus 348 ~~~~ 351 (406)
....
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 7654
No 167
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=123.55 Aligned_cols=78 Identities=19% Similarity=0.340 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCCC------CHHHHHHHhccCCcEEEEEeeC----CCeEEEEEeCChHHHHHHHHHhcCCccCCc-EE
Q 015450 273 PNNTTVFVGNLDSIV------TDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQ-NI 341 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~------t~e~l~~~F~~~G~i~~v~i~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~g~-~l 341 (406)
...++|||+|||..+ ++++|+++|++||.|.+|.|.+ .+|||||+|.+.++|.+|+..|||..|+|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346899999999999 7899999999999999999974 379999999999999999999999999998 99
Q ss_pred EEeeccCCC
Q 015450 342 RLSWGRSPS 350 (406)
Q Consensus 342 ~v~~~~~~~ 350 (406)
+|.++....
T Consensus 93 ~V~~a~~~~ 101 (105)
T 2nlw_A 93 RVNLFTDFD 101 (105)
T ss_dssp EEECSCCCC
T ss_pred EEEEcchHh
Confidence 999987544
No 168
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=123.45 Aligned_cols=84 Identities=24% Similarity=0.389 Sum_probs=75.1
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
...+.++|||+|||.++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|++|++.||+..+.++.+ +
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l--~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL--R 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC--E
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE--E
Confidence 34568999999999999999999999999999999999999899999999999999999999999999999976554 5
Q ss_pred eeeccc
Q 015450 157 LNWASF 162 (406)
Q Consensus 157 ~~~~~~ 162 (406)
+.++..
T Consensus 87 V~~a~~ 92 (103)
T 2dnm_A 87 VQVARY 92 (103)
T ss_dssp EEECSS
T ss_pred EEECCc
Confidence 555443
No 169
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=7.4e-17 Score=120.19 Aligned_cols=83 Identities=18% Similarity=0.313 Sum_probs=73.7
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.....++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++ +++..+.++. ++
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~--l~ 82 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKK--VE 82 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCB--CE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeE--EE
Confidence 34567899999999999999999999999999999999999899999999999999999999998 8999997655 45
Q ss_pred eeeccc
Q 015450 157 LNWASF 162 (406)
Q Consensus 157 ~~~~~~ 162 (406)
+.++..
T Consensus 83 V~~a~~ 88 (99)
T 2dgs_A 83 VKRAEP 88 (99)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 555543
No 170
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=3.7e-17 Score=125.57 Aligned_cols=80 Identities=23% Similarity=0.342 Sum_probs=71.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeC-CCeE-EEEEeCChHHHHHHHHHhcCCccCC--cEEEEeeccCC
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-GKRC-GFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSP 349 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~-~~g~-afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~~ 349 (406)
....|||+||++.+|+++|+++|++||.|.+|.+.. .+++ |||+|.+.++|.+|++.|||..|.| +.|+|+|++..
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 345677999999999999999999999999998854 4677 9999999999999999999999987 99999999976
Q ss_pred CCCC
Q 015450 350 SNKQ 353 (406)
Q Consensus 350 ~~~~ 353 (406)
...-
T Consensus 107 ~l~v 110 (130)
T 3zzy_A 107 SLNV 110 (130)
T ss_dssp SCCC
T ss_pred ceeE
Confidence 5443
No 171
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.71 E-value=2e-17 Score=135.40 Aligned_cols=128 Identities=18% Similarity=0.272 Sum_probs=80.2
Q ss_pred EEEccHHHHHHHHHHcCCCCCCCCCcceeeeecccC----------------CCCCCCCCCCceEEEcCCCccccHHHHH
Q 015450 128 IEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFG----------------AGEKRDDTPDHTIFVGDLAADVTDYMLQ 191 (406)
Q Consensus 128 V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~v~~lp~~~~~~~l~ 191 (406)
.+|++.++|..|+..+++.....+....+..+.... ..........++|||+||++++++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 689999999999999988777644444444432111 0111234456789999999999999999
Q ss_pred HHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCCc
Q 015450 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256 (406)
Q Consensus 192 ~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~ 256 (406)
++| +.||.|..|.++.+..++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++.....
T Consensus 91 ~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKF-CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHH-GGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHh-hcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 999 8999999999999998999999999999999999999999999999999999999876554
No 172
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=124.81 Aligned_cols=77 Identities=31% Similarity=0.509 Sum_probs=68.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
....++|||+||+.++++++|+++|+.|| |.+|.|.++ +|+|||+|.+.++|.+|+ .|+|..|+|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 35679999999999999999999999999 999999754 589999999999999999 899999999999999
Q ss_pred eccCCC
Q 015450 345 WGRSPS 350 (406)
Q Consensus 345 ~~~~~~ 350 (406)
+++...
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998653
No 173
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=9.1e-18 Score=122.66 Aligned_cols=77 Identities=18% Similarity=0.455 Sum_probs=69.1
Q ss_pred ceeeecCCCcccCHHHHhhhhhccc--ceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 82 RTLWIGDLQYWMDETYLNTCFAHTG--EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
.+|||+||+.++|+++|+++|++|| .|.+|+++.++.+|+++|||||+|.+.++|++|++.|||..+.++.+.|...
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 5799999999999999999999999 9999999999999999999999999999999999999999997766655543
No 174
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=119.68 Aligned_cols=77 Identities=22% Similarity=0.304 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
....++|||+|||.++++++|+++|+.| .|.+|.|.++ +|+|||+|.+.++|.+|+. ||+..|+|+.|+|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3467899999999999999999999999 9999998765 7899999999999999999 9999999999999999
Q ss_pred cCCC
Q 015450 347 RSPS 350 (406)
Q Consensus 347 ~~~~ 350 (406)
+.+.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8654
No 175
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=1.1e-16 Score=120.69 Aligned_cols=86 Identities=22% Similarity=0.392 Sum_probs=75.5
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCC-Ccce
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG-EQNF 155 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~-~~~~ 155 (406)
.....++|||+|||.++++++|+++|++||.|.+|+++.++ +++++|||||+|.+.++|.+|++.||+..+.+. ...+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34568999999999999999999999999999999999997 799999999999999999999999999988751 2556
Q ss_pred eeeecccC
Q 015450 156 RLNWASFG 163 (406)
Q Consensus 156 ~~~~~~~~ 163 (406)
++.++...
T Consensus 90 ~V~~a~~~ 97 (105)
T 2dnh_A 90 VVKFADTD 97 (105)
T ss_dssp EEEESCSS
T ss_pred EEEECccC
Confidence 66666543
No 176
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=3.3e-18 Score=134.38 Aligned_cols=77 Identities=21% Similarity=0.244 Sum_probs=68.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
....++|||+|||+++|+++|+++|+.|| |++|.|..+ +|||||+|++.++|++|| .+|+..|+||.|+|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34578999999999999999999999999 669998754 789999999999999999 68999999999999998
Q ss_pred cCCC
Q 015450 347 RSPS 350 (406)
Q Consensus 347 ~~~~ 350 (406)
....
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7554
No 177
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.5e-17 Score=119.15 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=68.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCe-EEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCCC
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR-CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 352 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g-~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 352 (406)
..++|||+||+.++++++|+++|+.||.|.+|.+.+..+ ||||+|.+.++|.+|+. |++..|+|+.|+|+++..+...
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCCC
Confidence 467999999999999999999999999999984443322 99999999999999999 9999999999999998755543
No 178
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.5e-17 Score=121.86 Aligned_cols=84 Identities=25% Similarity=0.398 Sum_probs=75.6
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
...+.++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+.++ .++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~ 88 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL--ILN 88 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE--ECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc--EEE
Confidence 456789999999999999999999999999999999999988999999999999999999999999999999664 555
Q ss_pred eeeccc
Q 015450 157 LNWASF 162 (406)
Q Consensus 157 ~~~~~~ 162 (406)
+.++..
T Consensus 89 v~~a~~ 94 (103)
T 2cq0_A 89 VEWAKP 94 (103)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 555543
No 179
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.3e-18 Score=129.15 Aligned_cols=78 Identities=26% Similarity=0.392 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
...++|||+||+.++++++|+++|+.||.|.+|.|..+ +|||||+|.+.++|.+|+ .||+..|+|+.|+|+|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34689999999999999999999999999999999643 689999999999999999 89999999999999999
Q ss_pred cCCCC
Q 015450 347 RSPSN 351 (406)
Q Consensus 347 ~~~~~ 351 (406)
+....
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 86543
No 180
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.71 E-value=5.1e-17 Score=126.78 Aligned_cols=83 Identities=19% Similarity=0.368 Sum_probs=74.6
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.+...++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.|++..+.++. |+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~--l~ 119 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR--IR 119 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC--CE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE--EE
Confidence 4566889999999999999999999999999999999999999999999999999999999999999999997655 44
Q ss_pred eeecc
Q 015450 157 LNWAS 161 (406)
Q Consensus 157 ~~~~~ 161 (406)
+.++.
T Consensus 120 V~~a~ 124 (129)
T 2kxn_B 120 VDFSI 124 (129)
T ss_dssp ESCCS
T ss_pred EEEec
Confidence 44443
No 181
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=1.7e-17 Score=123.68 Aligned_cols=82 Identities=20% Similarity=0.318 Sum_probs=73.4
Q ss_pred CCCcceeeecCCCc------ccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCC
Q 015450 78 PGEIRTLWIGDLQY------WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151 (406)
Q Consensus 78 ~~~~~~l~v~~lp~------~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~ 151 (406)
....++|||+|||. ++++++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|||..+.+
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g- 81 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL- 81 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS-
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC-
Confidence 35578999999999 99999999999999999999999999999999999999999999999999999999976
Q ss_pred Ccceeeeec
Q 015450 152 EQNFRLNWA 160 (406)
Q Consensus 152 ~~~~~~~~~ 160 (406)
...+++.++
T Consensus 82 ~r~l~V~~a 90 (100)
T 3ns6_A 82 KHRLFLYTM 90 (100)
T ss_dssp SCBCEEEES
T ss_pred CeEEEEEEC
Confidence 134445444
No 182
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=9.3e-17 Score=113.85 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=68.1
Q ss_pred CCce-EEEcCCCCCCCHHH----HHHHhccC-CcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 274 NNTT-VFVGNLDSIVTDEH----LRELFSQY-GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 274 ~~~~-l~V~nlp~~~t~e~----l~~~F~~~-G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
++.+ |||+||++++++++ |+++|++| |.|.+|. .|+|||+|.+.++|.+|++.|+|..|.||.|+|+||+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 3455 99999999999988 55899999 5999993 3999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 015450 348 SPSNKQA 354 (406)
Q Consensus 348 ~~~~~~~ 354 (406)
.+...-.
T Consensus 83 ~~sd~~~ 89 (96)
T 2diu_A 83 KNRELCE 89 (96)
T ss_dssp CSCCCCC
T ss_pred CCcceeE
Confidence 8776543
No 183
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=2.7e-17 Score=128.06 Aligned_cols=77 Identities=26% Similarity=0.474 Sum_probs=71.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
..++|||+||+.++++++|+++|+.||.|++|.+..+ +|||||+|.+.++|.+|+ .|||..|+|+.|+|+|++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999654 789999999999999999 799999999999999998
Q ss_pred CCCC
Q 015450 348 SPSN 351 (406)
Q Consensus 348 ~~~~ 351 (406)
....
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 184
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.6e-17 Score=120.79 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEE-EEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH-VKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~-v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
....++|||+|||+++++++|+++|+.||.|.+ |.|..+ +|||||+|.+.++|.+||.. ++..|+||.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 346789999999999999999999999999987 877543 78999999999999999997 99999999999999
Q ss_pred ccCCCC
Q 015450 346 GRSPSN 351 (406)
Q Consensus 346 ~~~~~~ 351 (406)
+.....
T Consensus 91 ~~~~~~ 96 (104)
T 1wg5_A 91 SSRAEV 96 (104)
T ss_dssp ECTTTS
T ss_pred CCHHHH
Confidence 875443
No 185
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=4.6e-17 Score=123.29 Aligned_cols=80 Identities=24% Similarity=0.386 Sum_probs=69.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
.....++|||+||+.++++++|+++|+.||.|.+|.|.++ +|||||+|.+.++|.+|+..+ +..|+|+.|+|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999765 689999999999999999986 588999999999
Q ss_pred eccCCCC
Q 015450 345 WGRSPSN 351 (406)
Q Consensus 345 ~~~~~~~ 351 (406)
+++.+..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9986654
No 186
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=5.3e-17 Score=117.87 Aligned_cols=75 Identities=24% Similarity=0.496 Sum_probs=68.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
.....++|||+|||.++++++|+++|++||.|.+|.+..+ +|+|||+|.+.++|.+|++ +++..|+|+.|+|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999654 6899999999999999997 48889999999999
Q ss_pred ec
Q 015450 345 WG 346 (406)
Q Consensus 345 ~~ 346 (406)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 187
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=8.2e-17 Score=120.18 Aligned_cols=83 Identities=16% Similarity=0.348 Sum_probs=73.9
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.....++|||+|||.++++++|+++|++||.|.+|+++.++ +++++|||||+|.+.++|++|++.|++..+.++ .++
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 89 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKEN--IIK 89 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC--EEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE--EEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999999999998664 555
Q ss_pred eeeccc
Q 015450 157 LNWASF 162 (406)
Q Consensus 157 ~~~~~~ 162 (406)
+.++..
T Consensus 90 v~~a~~ 95 (100)
T 2do4_A 90 VAISNS 95 (100)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 555543
No 188
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=2.4e-17 Score=120.36 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=72.6
Q ss_pred ceEEEcCCCccccHHHHHHHHHhhCC--CcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEeccc
Q 015450 174 HTIFVGDLAADVTDYMLQETFRARYP--STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (406)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~ 251 (406)
.+|||+||++++++++|+++| +.|| .|.+++++.++.+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F-~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAV-HSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHH-HTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHH-HHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 479999999999999999999 8999 9999999999999999999999999999999999999999999999999998
Q ss_pred CCCCc
Q 015450 252 TNKKT 256 (406)
Q Consensus 252 ~~~~~ 256 (406)
.....
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87543
No 189
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=119.97 Aligned_cols=80 Identities=25% Similarity=0.435 Sum_probs=72.5
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhc-ccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCC-CCCCCcc
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAH-TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP-MPNGEQN 154 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~-~~~~~~~ 154 (406)
.....++|||+|||.++|+++|+++|+. ||.|.+|+++.++ +++++|||||+|.+.++|.+|++.|++.. +.++.+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999998 89999999999999999999999999998 8766544
Q ss_pred eee
Q 015450 155 FRL 157 (406)
Q Consensus 155 ~~~ 157 (406)
|..
T Consensus 84 v~~ 86 (104)
T 2dhg_A 84 LSV 86 (104)
T ss_dssp CCB
T ss_pred EEE
Confidence 444
No 190
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.70 E-value=1.8e-16 Score=121.62 Aligned_cols=91 Identities=34% Similarity=0.570 Sum_probs=84.3
Q ss_pred CCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcc
Q 015450 166 EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (406)
Q Consensus 166 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~ 245 (406)
........++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34556678999999999999999999999 89999999999999889999999999999999999999999999999999
Q ss_pred eEecccCCCCcc
Q 015450 246 MRIGPATNKKTV 257 (406)
Q Consensus 246 i~v~~~~~~~~~ 257 (406)
|+|.++..+...
T Consensus 87 l~V~~a~~~~~~ 98 (115)
T 2dgo_A 87 IRTNWATRKPPA 98 (115)
T ss_dssp CEEEESSCCCCC
T ss_pred EEEEEccCCCCC
Confidence 999999877654
No 191
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=120.45 Aligned_cols=85 Identities=19% Similarity=0.481 Sum_probs=75.4
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEee-CCCCCccceEEEEEccHHHHHHHHHHc-CCCCCCCCCcc
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRN-KQTGQIEGYGFIEFISRAGAERVLQTF-NGTPMPNGEQN 154 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~-~~~~~~~g~a~V~f~~~~~a~~a~~~l-~~~~~~~~~~~ 154 (406)
.....++|||+|||.++++++|+++|++||.|.+|+++++ +.+++++|||||+|.+.++|.+|++.| |+..+.++ .
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~--~ 88 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR--R 88 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC--B
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC--E
Confidence 4456899999999999999999999999999999999999 788999999999999999999999999 99999765 5
Q ss_pred eeeeecccC
Q 015450 155 FRLNWASFG 163 (406)
Q Consensus 155 ~~~~~~~~~ 163 (406)
+++.++...
T Consensus 89 l~v~~a~~~ 97 (107)
T 2cph_A 89 LVLEWADSE 97 (107)
T ss_dssp CEEEECCCC
T ss_pred EEEEeCCCC
Confidence 555555443
No 192
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=1.7e-16 Score=123.48 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=75.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
.....++|||+||+.++++++|+++|+.||.|++|.|..+ +|+|||+|.+.++|.+|+..|||..|+|+.|+|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4456789999999999999999999999999999999764 68999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 015450 346 GRSPSNK 352 (406)
Q Consensus 346 ~~~~~~~ 352 (406)
+......
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9865543
No 193
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=7.2e-17 Score=123.84 Aligned_cols=78 Identities=18% Similarity=0.386 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC---CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCC
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~---~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 349 (406)
..+++|||+|||.++++++|+++|+.||.|.+|.+..+ +|+|||+|.+.++|.+|+..|||..|+|+.|+|.|+++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 35789999999999999999999999999999999654 789999999999999999999999999999999999854
Q ss_pred C
Q 015450 350 S 350 (406)
Q Consensus 350 ~ 350 (406)
.
T Consensus 86 ~ 86 (115)
T 3lqv_A 86 R 86 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 194
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=131.66 Aligned_cols=75 Identities=23% Similarity=0.390 Sum_probs=69.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCC--cEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYG--QLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G--~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
..++|||+||++++++++|+++|+.|| .|.+|+|..+ +|||||+|.+.++|.+||..|||..|+|+.|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 9999999654 68999999999999999999999999999999999
Q ss_pred ccC
Q 015450 346 GRS 348 (406)
Q Consensus 346 ~~~ 348 (406)
++.
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 874
No 195
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.7e-17 Score=121.45 Aligned_cols=82 Identities=20% Similarity=0.392 Sum_probs=73.8
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
..+.++|||+|||.++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|.+|++.||+..+.++. +++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~V 97 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP--ISV 97 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB--CEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE--EEE
Confidence 345789999999999999999999999999999999999999999999999999999999999999999997654 455
Q ss_pred eecc
Q 015450 158 NWAS 161 (406)
Q Consensus 158 ~~~~ 161 (406)
.++.
T Consensus 98 ~~a~ 101 (106)
T 1p27_B 98 DWCF 101 (106)
T ss_dssp EESE
T ss_pred Eeec
Confidence 5443
No 196
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=6.2e-17 Score=124.20 Aligned_cols=105 Identities=14% Similarity=0.235 Sum_probs=87.6
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
+...++|||+|||.++++++|+++|+.||.|.+|.++.+ +.++|||||+|.+.++|.+|++.|||..+.++ .+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v 79 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR--YLVV 79 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC--BCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe--EEEE
Confidence 345789999999999999999999999999999999865 45689999999999999999999999999665 4555
Q ss_pred eecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCC
Q 015450 158 NWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200 (406)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~ 200 (406)
.++...... .++....++++|.++| +.||.
T Consensus 80 ~~a~~~~~~------------~~~~~~~~~~~l~~~~-~~~g~ 109 (115)
T 3lqv_A 80 LYYNANRAF------------QKMDTKKKEEQLKLLK-EKYGI 109 (115)
T ss_dssp EECCHHHHT------------TTSCHHHHHHHHHHHH-HHHCC
T ss_pred EEecCChhh------------hhhhHhHhHHHHHHHH-HHhCC
Confidence 555432111 5677889999999999 78874
No 197
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-16 Score=122.08 Aligned_cols=79 Identities=15% Similarity=0.404 Sum_probs=72.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCcc--------C
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQL--------G 337 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~--------~ 337 (406)
.....++|||+||+.++++++|+++|+.||.|.+|.|..+ ++||||+|.+.++|.+|+..|||..| .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456789999999999999999999999999999999765 68999999999999999999999999 5
Q ss_pred CcEEEEeeccCC
Q 015450 338 GQNIRLSWGRSP 349 (406)
Q Consensus 338 g~~l~v~~~~~~ 349 (406)
++.|+|+|++++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999854
No 198
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.7e-17 Score=119.84 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=67.7
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCC--CCCCCCCcc
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG--TPMPNGEQN 154 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~--~~~~~~~~~ 154 (406)
++...++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|++.++|++|++.+++ ..+. ++.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~--Gr~ 83 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR--GQP 83 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEET--TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceEC--CEE
Confidence 4556899999999999999999999999999999999976 48999999999999999998875 4564 456
Q ss_pred eeeeecccC
Q 015450 155 FRLNWASFG 163 (406)
Q Consensus 155 ~~~~~~~~~ 163 (406)
+++.++...
T Consensus 84 l~V~~A~~~ 92 (105)
T 1sjq_A 84 IYIQFSNHK 92 (105)
T ss_dssp CCBCCCSSS
T ss_pred EEEEEcCCC
Confidence 667776554
No 199
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.70 E-value=4.9e-17 Score=125.29 Aligned_cols=79 Identities=24% Similarity=0.451 Sum_probs=72.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCC
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 351 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 351 (406)
....++|||+|| ++++++|+++|+.||.|.+|.+.+.+|||||+|.+.++|.+|+..|+|..|+|+.|+|.|++....
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 346789999996 699999999999999999999999999999999999999999999999999999999999986654
Q ss_pred C
Q 015450 352 K 352 (406)
Q Consensus 352 ~ 352 (406)
.
T Consensus 114 ~ 114 (121)
T 2bz2_A 114 L 114 (121)
T ss_dssp -
T ss_pred C
Confidence 3
No 200
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=2.9e-17 Score=122.48 Aligned_cols=78 Identities=21% Similarity=0.378 Sum_probs=68.1
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeC-CCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNK-QTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~-~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
....++|||+||+.++++++|+++|+.|| |.+|+++.++ .+|+++|||||+|.+.++|.+|+ .+++..+.++.+.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34579999999999999999999999999 9999999998 58999999999999999999999 899999977655444
Q ss_pred e
Q 015450 157 L 157 (406)
Q Consensus 157 ~ 157 (406)
.
T Consensus 94 ~ 94 (100)
T 2j76_E 94 V 94 (100)
T ss_dssp E
T ss_pred e
Confidence 4
No 201
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.6e-16 Score=118.09 Aligned_cols=83 Identities=22% Similarity=0.386 Sum_probs=73.3
Q ss_pred CCCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcce
Q 015450 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (406)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~ 155 (406)
....+.++|||+|||.++|+++|+++|++||.|.+|+++.+ ++++++||||+|.+.++|.+|++.||+..+.++. +
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--l 85 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP--L 85 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB--C
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE--E
Confidence 34557899999999999999999999999999999999998 7999999999999999999999999999996654 5
Q ss_pred eeeeccc
Q 015450 156 RLNWASF 162 (406)
Q Consensus 156 ~~~~~~~ 162 (406)
++.++..
T Consensus 86 ~V~~a~~ 92 (103)
T 2d9p_A 86 YVALAQR 92 (103)
T ss_dssp EEEECSS
T ss_pred EEEEecc
Confidence 5555543
No 202
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.69 E-value=6.9e-17 Score=117.32 Aligned_cols=83 Identities=35% Similarity=0.576 Sum_probs=76.6
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecc
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 250 (406)
.+.++|||+||+.++++++|+++| +.||.|.++.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHH-HhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 456799999999999999999999 8999999999999988999999999999999999999999999999999999999
Q ss_pred cCCC
Q 015450 251 ATNK 254 (406)
Q Consensus 251 ~~~~ 254 (406)
+..+
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8754
No 203
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=9.4e-17 Score=115.46 Aligned_cols=81 Identities=37% Similarity=0.630 Sum_probs=77.4
Q ss_pred ceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCC
Q 015450 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (406)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~ 253 (406)
.+|||+|||.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.++..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 589999999999999999999 8999999999999988999999999999999999999999999999999999999886
Q ss_pred CC
Q 015450 254 KK 255 (406)
Q Consensus 254 ~~ 255 (406)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 204
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=121.65 Aligned_cols=85 Identities=20% Similarity=0.389 Sum_probs=75.6
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcC------CCCCCC
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN------GTPMPN 150 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~------~~~~~~ 150 (406)
.....++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|.+|++.++ +..+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 44568899999999999999999999999999999999999999999999999999999999999999 888865
Q ss_pred CCcceeeeecccC
Q 015450 151 GEQNFRLNWASFG 163 (406)
Q Consensus 151 ~~~~~~~~~~~~~ 163 (406)
..+++.++...
T Consensus 91 --~~l~v~~a~~~ 101 (111)
T 1x4h_A 91 --RQLKVDLAVTR 101 (111)
T ss_dssp --CEEEEECCCCC
T ss_pred --EEEEEEECCCC
Confidence 45566665543
No 205
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=8.3e-17 Score=119.20 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=71.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEe-eCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCC
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI-PAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i-~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 349 (406)
.....++|||+||+.++++++|+++|+.||.|..+.. ...+|+|||+|.+.++|.+|+..|+|..|+|+.|+|.|++++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 3446789999999999999999999999999988721 223789999999999999999999999999999999999865
Q ss_pred CC
Q 015450 350 SN 351 (406)
Q Consensus 350 ~~ 351 (406)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 206
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=9.8e-17 Score=118.80 Aligned_cols=78 Identities=21% Similarity=0.277 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEE-eeCC--CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCC
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVK-IPAG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~-i~~~--~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 349 (406)
...++|||+||+.++++++|+++|+.||.|.+|+ +..+ .+.|||+|.+.++|.+|+..|||..|+|+.|+|++++++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3468999999999999999999999999999994 7665 456999999999999999999999999999999999876
Q ss_pred C
Q 015450 350 S 350 (406)
Q Consensus 350 ~ 350 (406)
.
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 3
No 207
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.4e-17 Score=118.36 Aligned_cols=75 Identities=24% Similarity=0.373 Sum_probs=70.1
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCc
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~ 153 (406)
...++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|.+|++.||+..+.++.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 77 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEE
Confidence 457899999999999999999999999999999999999899999999999999999999999999998866443
No 208
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.69 E-value=5.5e-17 Score=117.82 Aligned_cols=71 Identities=23% Similarity=0.491 Sum_probs=68.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccC----C-------cEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEE
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQY----G-------QLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 342 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~----G-------~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 342 (406)
..++|||+||+.++++++|+++|+.| | .|.++.+.+++++|||+|.+.++|.+|+ .|||..|+|+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 83 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEE
Confidence 46899999999999999999999999 8 9999999999999999999999999999 9999999999999
Q ss_pred Eee
Q 015450 343 LSW 345 (406)
Q Consensus 343 v~~ 345 (406)
|+.
T Consensus 84 V~r 86 (87)
T 2hzc_A 84 IRR 86 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 974
No 209
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=7.4e-17 Score=120.65 Aligned_cols=100 Identities=19% Similarity=0.309 Sum_probs=84.6
Q ss_pred ceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCC
Q 015450 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (406)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~ 253 (406)
++|||+||+.++++++|+++| +.||.|..+.++.+ ++|||||+|.+.++|.+|++.|++..+.|+.|+|.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAF-SYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHH-HHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 479999999999999999999 89999999999877 689999999999999999999999999999999999988
Q ss_pred CCcccccccCCccccCCCCCCCceEEEcCCC
Q 015450 254 KKTVSASYQNSQVAQSDDDPNNTTVFVGNLD 284 (406)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp 284 (406)
....... ...........+|||+||+
T Consensus 75 ~~~~~~~-----~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 75 MPRRSRF-----DRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCCSSCC-----CSCCCSCCCCSCCCSCCCC
T ss_pred CCCcccC-----CCCCccccCCCceecCCCC
Confidence 6643221 1112223457889999996
No 210
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=118.24 Aligned_cols=86 Identities=23% Similarity=0.410 Sum_probs=80.2
Q ss_pred CCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcce
Q 015450 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (406)
Q Consensus 167 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i 246 (406)
.......++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVF-SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHH-HTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3445667899999999999999999999 899999999999999899999999999999999999999999999999999
Q ss_pred EecccCC
Q 015450 247 RIGPATN 253 (406)
Q Consensus 247 ~v~~~~~ 253 (406)
+|.++..
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9998864
No 211
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=118.57 Aligned_cols=87 Identities=26% Similarity=0.411 Sum_probs=81.8
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
....++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLF-SAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHH-HTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999999 899999999999998899999999999999999999999999999999999999
Q ss_pred ccCCCCcc
Q 015450 250 PATNKKTV 257 (406)
Q Consensus 250 ~~~~~~~~ 257 (406)
++..+...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99887654
No 212
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=127.39 Aligned_cols=78 Identities=26% Similarity=0.482 Sum_probs=71.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEE
Q 015450 269 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 342 (406)
Q Consensus 269 ~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 342 (406)
.......++|||+|||.++++++|+++|++||.|++|.|.++ +++|||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344557899999999999999999999999999999999665 78999999999999999999999999999999
Q ss_pred Eeec
Q 015450 343 LSWG 346 (406)
Q Consensus 343 v~~~ 346 (406)
|+||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 213
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=1.6e-17 Score=122.80 Aligned_cols=76 Identities=24% Similarity=0.286 Sum_probs=67.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeC------CCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA------GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~------~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
...++|||+|||.++++++|+++|++||.|.++.+.. .+++|||+|.+.++|.+|++.||+..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3568999999999999999999999999997766643 3689999999999999999999999999999999997
Q ss_pred cC
Q 015450 347 RS 348 (406)
Q Consensus 347 ~~ 348 (406)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 214
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.69 E-value=8.7e-17 Score=119.04 Aligned_cols=85 Identities=25% Similarity=0.467 Sum_probs=80.3
Q ss_pred CCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEeccc
Q 015450 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (406)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~ 251 (406)
++++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLC-SNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHH-HhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 36799999999999999999999 89999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 015450 252 TNKKTV 257 (406)
Q Consensus 252 ~~~~~~ 257 (406)
..+...
T Consensus 80 ~~~~~~ 85 (96)
T 2x1f_A 80 SNSDIS 85 (96)
T ss_dssp SCSSGG
T ss_pred CCCCCC
Confidence 887654
No 215
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-17 Score=117.62 Aligned_cols=70 Identities=21% Similarity=0.442 Sum_probs=64.5
Q ss_pred CceEEEcCCCCCC------CHHHHHHHhccCCcEEEEEeeC----CCeEEEEEeCChHHHHHHHHHhcCCccCCc-EEEE
Q 015450 275 NTTVFVGNLDSIV------TDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQ-NIRL 343 (406)
Q Consensus 275 ~~~l~V~nlp~~~------t~e~l~~~F~~~G~i~~v~i~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~g~-~l~v 343 (406)
+++|||+|||.++ ++++|+++|++||.|.+|.+.+ .+|+|||+|.+.++|.+|+..|||..|+|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 7799999999999999999974 379999999999999999999999999999 8876
Q ss_pred e
Q 015450 344 S 344 (406)
Q Consensus 344 ~ 344 (406)
+
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 216
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=119.51 Aligned_cols=78 Identities=14% Similarity=0.205 Sum_probs=70.5
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
....++|||+|||.++|+++|+++|+.||.|.+|.+++++. ++++|||||+|.+.++|.+|++ +++..+.++.+.|..
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999986 9999999999999999999999 899998776555543
No 217
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.7e-17 Score=124.46 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=71.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcE-EEEEeeC-----CCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL-VHVKIPA-----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i-~~v~i~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
.....++|||+|||+++++++|+++|+.||.| .+|.|.. .+|||||+|.+.++|.+||.. |+..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567899999999999999999999999999 7888865 478999999999999999997 9999999999999
Q ss_pred eccCCC
Q 015450 345 WGRSPS 350 (406)
Q Consensus 345 ~~~~~~ 350 (406)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998654
No 218
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=118.68 Aligned_cols=88 Identities=31% Similarity=0.513 Sum_probs=81.9
Q ss_pred CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
.....++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVF-SKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHH-HHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 35567899999999999999999999 89999999999999889999999999999999999999999999999999999
Q ss_pred cccCCCCcc
Q 015450 249 GPATNKKTV 257 (406)
Q Consensus 249 ~~~~~~~~~ 257 (406)
.++......
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 998876543
No 219
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.68 E-value=3.4e-16 Score=119.88 Aligned_cols=86 Identities=20% Similarity=0.433 Sum_probs=80.4
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
....++|||+||+.++++++|+++| +.||.|..+.++.+. +++++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVF-GKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHH-HTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4556899999999999999999999 899999999999998 99999999999999999999999999999999999999
Q ss_pred ccCCCCcc
Q 015450 250 PATNKKTV 257 (406)
Q Consensus 250 ~~~~~~~~ 257 (406)
++......
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99876554
No 220
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=117.70 Aligned_cols=86 Identities=28% Similarity=0.529 Sum_probs=80.7
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhCCCccee-EEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA-KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
..+++|||+||+.++++++|+++| +.||.|..+ .++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTF-SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHH-HTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 457899999999999999999999 899999999 999998899999999999999999999999999999999999999
Q ss_pred ccCCCCcc
Q 015450 250 PATNKKTV 257 (406)
Q Consensus 250 ~~~~~~~~ 257 (406)
++..+...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99876543
No 221
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=119.41 Aligned_cols=88 Identities=24% Similarity=0.396 Sum_probs=82.1
Q ss_pred CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
.....++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHH-TTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHh-hccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999 89999999999999889999999999999999999999999999999999999
Q ss_pred cccCCCCcc
Q 015450 249 GPATNKKTV 257 (406)
Q Consensus 249 ~~~~~~~~~ 257 (406)
.++......
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2cqb_A 87 NLAKPMRIK 95 (102)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876554
No 222
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=4.2e-16 Score=121.18 Aligned_cols=86 Identities=31% Similarity=0.437 Sum_probs=80.2
Q ss_pred CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
.....++|||+||+.++++++|+++| +.||.|..+.++.+. +++++|||||+|.+.++|.+|++.+++..+.|+.|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELF-AEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHH-HTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 45567899999999999999999999 899999999999998 9999999999999999999999999999999999999
Q ss_pred cccCCCCc
Q 015450 249 GPATNKKT 256 (406)
Q Consensus 249 ~~~~~~~~ 256 (406)
.++.....
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99887544
No 223
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=6.4e-17 Score=120.49 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCc------cccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccC-
Q 015450 171 TPDHTIFVGDLAA------DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST- 243 (406)
Q Consensus 171 ~~~~~l~v~~lp~------~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g- 243 (406)
..+++|||+|||. ++++++|+++| +.||.|.++.++.+..+++++|||||+|.+.++|.+|++.||+..+.|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F-~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLF-SKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHH-HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHH-HhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3467999999999 99999999999 899999999999999999999999999999999999999999999999
Q ss_pred cceEecccCCC
Q 015450 244 RPMRIGPATNK 254 (406)
Q Consensus 244 ~~i~v~~~~~~ 254 (406)
+.|+|.++..+
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999988754
No 224
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.68 E-value=1.5e-16 Score=115.56 Aligned_cols=77 Identities=34% Similarity=0.578 Sum_probs=62.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-CeEEEEEeCChHHHHHHHHHhcCCc--cCCcEEEEeecc
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-KRCGFVQFADRSCAEEALRMLNGTQ--LGGQNIRLSWGR 347 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-~g~afV~F~~~~~A~~A~~~l~g~~--~~g~~l~v~~~~ 347 (406)
.....++|||+||++++|+++|+++|++||.|.+|.|.++ ||||||+|++.++|.+ |++.. ++|+.|+|.+++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 3456789999999999999999999999999999999865 8999999999999983 45555 569999999998
Q ss_pred CCCC
Q 015450 348 SPSN 351 (406)
Q Consensus 348 ~~~~ 351 (406)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 6554
No 225
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=8.4e-17 Score=121.86 Aligned_cols=85 Identities=24% Similarity=0.384 Sum_probs=69.3
Q ss_pred CCCCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcc
Q 015450 75 QGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (406)
Q Consensus 75 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~ 154 (406)
.....+.++|||+||+.++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.++ ..+.+ ..
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g--~~ 95 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS--KT 95 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETT--EE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCC--EE
Confidence 3455678999999999999999999999999999999999999899999999999999999999999764 66655 45
Q ss_pred eeeeeccc
Q 015450 155 FRLNWASF 162 (406)
Q Consensus 155 ~~~~~~~~ 162 (406)
+++.++..
T Consensus 96 l~V~~a~~ 103 (109)
T 2rs2_A 96 IDPKVAFP 103 (109)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 55555543
No 226
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.68 E-value=3.6e-17 Score=115.16 Aligned_cols=69 Identities=20% Similarity=0.390 Sum_probs=64.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
+|||+|||.++++++|+++|++||.|.+|.+..+ +|+|||+|.+.++|++|++ |++..|+|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999999654 5899999999999999998 8999999999999985
No 227
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.68 E-value=1.1e-16 Score=115.62 Aligned_cols=82 Identities=26% Similarity=0.445 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
..+.++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHH-GGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHH-hccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999999 899999999999998899999999999999999999999999999999999998
Q ss_pred ccC
Q 015450 250 PAT 252 (406)
Q Consensus 250 ~~~ 252 (406)
++.
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 863
No 228
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.8e-17 Score=117.87 Aligned_cols=77 Identities=32% Similarity=0.519 Sum_probs=66.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCCC
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 352 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 352 (406)
.+++|||+|||.++++++|+++|+.||.|.+|.|.++ +|||||+|.+.++|++|+.. ...++|+.|+|.+++++...
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCCC
Confidence 4689999999999999999999999999999999765 89999999999999864332 33469999999999866543
No 229
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.68 E-value=3.5e-16 Score=114.84 Aligned_cols=78 Identities=22% Similarity=0.388 Sum_probs=70.3
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
....++|||+|||.++++++|+++|++||.|.+|++.++ +++++|||||+|.+.++|++|++.|++..+.++.+.|+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356789999999999999999999999999999999984 789999999999999999999999999999776555544
No 230
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.68 E-value=1.6e-17 Score=121.47 Aligned_cols=75 Identities=35% Similarity=0.591 Sum_probs=67.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCC
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 349 (406)
++|||+||+.++++++|+++|+.||.|.+|.+.++ +|+|||+|.+.+ |.+|+..|||..|+|+.|+|+++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999754 789999999999 99999999999999999999999865
Q ss_pred CC
Q 015450 350 SN 351 (406)
Q Consensus 350 ~~ 351 (406)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 231
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-16 Score=121.62 Aligned_cols=84 Identities=27% Similarity=0.493 Sum_probs=74.4
Q ss_pred CCCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcce
Q 015450 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (406)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~ 155 (406)
......++|||+|||.++|+++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.+++ .+.+ ..+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g--~~l 88 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG--RKA 88 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT--EEC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC--EEE
Confidence 3456689999999999999999999999999999999999998999999999999999999999999998 6755 555
Q ss_pred eeeeccc
Q 015450 156 RLNWASF 162 (406)
Q Consensus 156 ~~~~~~~ 162 (406)
++.++..
T Consensus 89 ~V~~a~~ 95 (116)
T 2cqd_A 89 NVNLAYL 95 (116)
T ss_dssp EEEESTT
T ss_pred EEEEccc
Confidence 6666543
No 232
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=3.1e-18 Score=131.66 Aligned_cols=79 Identities=27% Similarity=0.465 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEE--------EEeeCC------CeEEEEEeCChHHHHHHHHHhcCCccCC
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH--------VKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGG 338 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~--------v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g 338 (406)
...++|||+||+.++++++|+++|+.||.|.+ |.|..+ ++||||+|.+.++|.+|+..||+..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999998 777654 6899999999999999999999999999
Q ss_pred cEEEEeeccCCCC
Q 015450 339 QNIRLSWGRSPSN 351 (406)
Q Consensus 339 ~~l~v~~~~~~~~ 351 (406)
+.|+|+|++.+..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999986554
No 233
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=125.19 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=72.1
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeE--EEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCC----CCCC
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA--VKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGT----PMPN 150 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~--~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~----~~~~ 150 (406)
.....++|||+||++++|+++|+++|++||.|.. |+|++++.+|+++|||||+|.+. +|.+|++.||+. .+.+
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999976 99999999999999999999999 999999999999 7866
Q ss_pred CCcceeee
Q 015450 151 GEQNFRLN 158 (406)
Q Consensus 151 ~~~~~~~~ 158 (406)
+.+.|+..
T Consensus 98 r~l~V~~a 105 (131)
T 2m2b_A 98 KTINVEFA 105 (131)
T ss_dssp CCCCCEEC
T ss_pred EEEEEEEC
Confidence 55555443
No 234
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=3.6e-16 Score=117.30 Aligned_cols=81 Identities=20% Similarity=0.430 Sum_probs=72.2
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
....++|||+|||.++++++|+++|++|| |.+|++++++.+++++|||||+|.+.++|++|+ .||+..+.++ .+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~--~l~V 87 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR--SLRV 87 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE--ECEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe--EEEE
Confidence 45578999999999999999999999997 999999999999999999999999999999999 8999999665 4555
Q ss_pred eeccc
Q 015450 158 NWASF 162 (406)
Q Consensus 158 ~~~~~ 162 (406)
.++..
T Consensus 88 ~~a~~ 92 (103)
T 2dng_A 88 DIAEG 92 (103)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 55543
No 235
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=116.45 Aligned_cols=84 Identities=20% Similarity=0.293 Sum_probs=78.6
Q ss_pred CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceE
Q 015450 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (406)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~ 247 (406)
......++|||+|||.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIF-SKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHT-TTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 345567899999999999999999999 8999999999999998899999999999999999999999999999999999
Q ss_pred ecccC
Q 015450 248 IGPAT 252 (406)
Q Consensus 248 v~~~~ 252 (406)
|.++.
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 98863
No 236
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=8.6e-17 Score=123.61 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=70.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCc---EEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEE
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQ---LVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~---i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
....++|||+||++++|+++|+++|+.||. |.+|+|..+ +|||||+|.+.++|++||. ||+..|+||.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 446789999999999999999999999999 888888644 7899999999999999999 8999999999999
Q ss_pred eeccCC
Q 015450 344 SWGRSP 349 (406)
Q Consensus 344 ~~~~~~ 349 (406)
.++...
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998643
No 237
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=118.21 Aligned_cols=79 Identities=23% Similarity=0.364 Sum_probs=69.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEE-----EEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeec
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH-----VKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 346 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~-----v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 346 (406)
....++|||+||+.++++++|+++|+.||.|.+ ....+.+|||||+|.+.++|.+|++ ||+..|+|+.|+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 345789999999999999999999999997655 2334568999999999999999999 9999999999999999
Q ss_pred cCCCC
Q 015450 347 RSPSN 351 (406)
Q Consensus 347 ~~~~~ 351 (406)
+.+..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86554
No 238
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=118.17 Aligned_cols=81 Identities=20% Similarity=0.408 Sum_probs=72.3
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.....++|||+|||.++++++|+++|++||.|.+|++..++. ++++|||||+|.+.++|++|++.||+..+.++. ++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~ 88 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP--IN 88 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE--CE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCE--EE
Confidence 345679999999999999999999999999999999999975 999999999999999999999999999997654 44
Q ss_pred eeec
Q 015450 157 LNWA 160 (406)
Q Consensus 157 ~~~~ 160 (406)
+.++
T Consensus 89 V~~a 92 (95)
T 2ywk_A 89 VSGP 92 (95)
T ss_dssp EECC
T ss_pred EEEc
Confidence 4444
No 239
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.67 E-value=1.6e-16 Score=135.57 Aligned_cols=83 Identities=25% Similarity=0.531 Sum_probs=73.0
Q ss_pred CCCCCceEEEcCCCCCC---------CHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCcc-----
Q 015450 271 DDPNNTTVFVGNLDSIV---------TDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQL----- 336 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~---------t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~----- 336 (406)
....+++|||+||+.++ ++++|+++|++||.|++|+|..+||||||+|.+.++|+.|++.|+|..|
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 34578999999999998 7999999999999999999999999999999999999999999999999
Q ss_pred -------CCcEEEEeeccCCCCCC
Q 015450 337 -------GGQNIRLSWGRSPSNKQ 353 (406)
Q Consensus 337 -------~g~~l~v~~~~~~~~~~ 353 (406)
.|+.|.|+||+...+..
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp TTGGGGGGSCCCEEEECC------
T ss_pred ccccccCCCCEEEEEEccCCCCHH
Confidence 89999999999765543
No 240
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-15 Score=116.98 Aligned_cols=84 Identities=25% Similarity=0.453 Sum_probs=73.9
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCC-----
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG----- 151 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~----- 151 (406)
.....++|||+|||.++++++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|.+|++.||+..+.+.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999998 899999999999999999999999999998653
Q ss_pred -Ccceeeeecc
Q 015450 152 -EQNFRLNWAS 161 (406)
Q Consensus 152 -~~~~~~~~~~ 161 (406)
...+++.++.
T Consensus 100 ~~~~l~v~~a~ 110 (114)
T 1x5o_A 100 PTEPLLCKFSG 110 (114)
T ss_dssp CSSCBEEEECC
T ss_pred CCCceeEEccC
Confidence 3445555554
No 241
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.67 E-value=1.5e-16 Score=121.06 Aligned_cols=82 Identities=18% Similarity=0.366 Sum_probs=74.0
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
..+.++|||+|||.++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+.++ .+++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~V 100 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ--TIQV 100 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE--ECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc--EEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999664 5555
Q ss_pred eecc
Q 015450 158 NWAS 161 (406)
Q Consensus 158 ~~~~ 161 (406)
.++.
T Consensus 101 ~~a~ 104 (110)
T 1oo0_B 101 DWCF 104 (110)
T ss_dssp EESE
T ss_pred EEcc
Confidence 5554
No 242
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.3e-17 Score=123.92 Aligned_cols=81 Identities=16% Similarity=0.303 Sum_probs=72.7
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
....++|||+||+.++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|+ .||+..+.++ .+++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~--~l~V 98 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGV--PIIV 98 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTE--EEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCe--EEEE
Confidence 456789999999999999999999999999999999999989999999999999999999999 8999999664 4555
Q ss_pred eecc
Q 015450 158 NWAS 161 (406)
Q Consensus 158 ~~~~ 161 (406)
.++.
T Consensus 99 ~~a~ 102 (114)
T 2cq4_A 99 QASQ 102 (114)
T ss_dssp EEHH
T ss_pred EecC
Confidence 5543
No 243
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=119.77 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=67.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
..++|||+|||+++++++|+++|+.| .|.+|.|..+ +|+|||+|.+.++|.+|| .+|+..|+||.|+|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 35799999999999999999999999 8999999754 789999999999999999 5899999999999988764
No 244
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=2.8e-16 Score=122.59 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=73.8
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
..+.++|||+|||.++|+++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|++|++.||+..|.++.+ ++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l--~v 96 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI--SV 96 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC--EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE--EE
Confidence 3457899999999999999999999999999999999998899999999999999999999999999999966554 44
Q ss_pred eecc
Q 015450 158 NWAS 161 (406)
Q Consensus 158 ~~~~ 161 (406)
.++.
T Consensus 97 ~~a~ 100 (126)
T 3ex7_B 97 DWCF 100 (126)
T ss_dssp EESE
T ss_pred EEec
Confidence 5544
No 245
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=8.9e-17 Score=125.84 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=69.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCc---EEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEE
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQ---LVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~---i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
....++|||+|||+++|+++|+++|+.||. |.+|.|.++ +|||||+|.+.++|++||+ ||+..|+||.|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 345789999999999999999999999999 888888644 7899999999999999999 9999999999999
Q ss_pred eeccC
Q 015450 344 SWGRS 348 (406)
Q Consensus 344 ~~~~~ 348 (406)
.++..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 99864
No 246
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.6e-16 Score=115.54 Aligned_cols=84 Identities=21% Similarity=0.447 Sum_probs=72.4
Q ss_pred CCCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcce
Q 015450 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (406)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~ 155 (406)
......++|||+|||.++++++|+++|++||.|.+|+++.+.. .++|||||+|.+.++|++|++.|++..+.++. +
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRK--I 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEE--C
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEE--E
Confidence 3456689999999999999999999999999999999999863 48899999999999999999999999996654 5
Q ss_pred eeeecccC
Q 015450 156 RLNWASFG 163 (406)
Q Consensus 156 ~~~~~~~~ 163 (406)
++.++...
T Consensus 86 ~v~~a~~~ 93 (103)
T 2cq3_A 86 EVNNATAR 93 (103)
T ss_dssp EEEECCSS
T ss_pred EEEEcccC
Confidence 55555443
No 247
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.66 E-value=2.3e-16 Score=119.35 Aligned_cols=79 Identities=20% Similarity=0.372 Sum_probs=71.8
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
....++|||+|||.++++++|+++|++||.|.+|+++.++ +++++|||||+|.+.++|++|++.|++..+.++.+.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999765544443
No 248
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=117.33 Aligned_cols=86 Identities=14% Similarity=0.305 Sum_probs=79.3
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCC---CCCCcceEEEEecCHHHHHHHHHHhcCccccCcceE
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL---TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~ 247 (406)
.+.++|||+||++++++++|+++| +.||.|..+.++.+.. +++++|||||+|.+.++|.+|++.|++..+.|+.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVF-SKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 456899999999999999999999 8999999999998876 668999999999999999999999999999999999
Q ss_pred ecccCCCCcc
Q 015450 248 IGPATNKKTV 257 (406)
Q Consensus 248 v~~~~~~~~~ 257 (406)
|.++......
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 249
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-16 Score=119.47 Aligned_cols=89 Identities=22% Similarity=0.308 Sum_probs=82.2
Q ss_pred CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcc--------eeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCc
Q 015450 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK--------GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (406)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 239 (406)
......++|||+||+.++++++|+++| +.||.|. .+.++.+..+++++|||||+|.+.++|.+|++.|++.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFF-KQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHH-TTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHH-HhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 345677899999999999999999999 8999999 6999999889999999999999999999999999999
Q ss_pred cccCcceEecccCCCCcc
Q 015450 240 FCSTRPMRIGPATNKKTV 257 (406)
Q Consensus 240 ~~~g~~i~v~~~~~~~~~ 257 (406)
.+.|+.|+|.++..+...
T Consensus 89 ~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp EETTEECEEECSSCCCCS
T ss_pred ccCCCEEEEEECCCCCCC
Confidence 999999999999876553
No 250
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.3e-16 Score=116.23 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=68.4
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.+...++|||+|||+++|+++|+++|+.||. ++|+|+.++ +++++|||||+|.+.++|++||+ +|+..+.++.+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3456789999999999999999999999995 599999997 89999999999999999999995 79988877655444
Q ss_pred e
Q 015450 157 L 157 (406)
Q Consensus 157 ~ 157 (406)
.
T Consensus 88 ~ 88 (102)
T 1wez_A 88 L 88 (102)
T ss_dssp E
T ss_pred E
Confidence 3
No 251
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=115.73 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=68.0
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
.++++|||+|||.++|+++|+++|++||.|.+|+++++ +|||||+|++.++|.+|++.+++..+...++.++++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 45789999999999999999999999999999999864 489999999999999999999988754456677777
Q ss_pred eccc
Q 015450 159 WASF 162 (406)
Q Consensus 159 ~~~~ 162 (406)
+++.
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 7654
No 252
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4e-16 Score=115.97 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=78.7
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
....++|||+|||+++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F-~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFF-YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHT-TTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4456899999999999999999999 899999999999998899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 015450 250 PATNK 254 (406)
Q Consensus 250 ~~~~~ 254 (406)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 253
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=8.9e-16 Score=114.44 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=67.3
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
..+++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|++.++|.+|++.|++..+...++.+++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45789999999999999999999999999999998864 489999999999999999988776533355667777
Q ss_pred ecccC
Q 015450 159 WASFG 163 (406)
Q Consensus 159 ~~~~~ 163 (406)
++...
T Consensus 87 ~a~~~ 91 (104)
T 1wex_A 87 YSTSK 91 (104)
T ss_dssp ECSSS
T ss_pred EccCc
Confidence 76644
No 254
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=116.77 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=66.9
Q ss_pred CCcceeeecCCCc-ccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 79 GEIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 79 ~~~~~l~v~~lp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
.++++|||+|||+ ++|+++|+++|++||.|.+|.+++++ +||||+|++.++|.+|++.|++......++.+++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4688999999999 99999999999999999999998764 7999999999999999999887653334566677
Q ss_pred eeccc
Q 015450 158 NWASF 162 (406)
Q Consensus 158 ~~~~~ 162 (406)
.++..
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 76664
No 255
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.65 E-value=3.2e-17 Score=154.29 Aligned_cols=86 Identities=21% Similarity=0.392 Sum_probs=80.6
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
....++|||+||++++++++|.++| +.||.|..|.|+.+..+++++|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREF-EVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4556899999999999999999999 899999999999998899999999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 015450 250 PATNKKT 256 (406)
Q Consensus 250 ~~~~~~~ 256 (406)
++.....
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9986544
No 256
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=113.20 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=65.8
Q ss_pred cceeeecCCCccc------CHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCC-Cc
Q 015450 81 IRTLWIGDLQYWM------DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG-EQ 153 (406)
Q Consensus 81 ~~~l~v~~lp~~~------~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~-~~ 153 (406)
+++|||+|||..+ ++++|+++|++||.|.+|.+. +.+|+++|||||+|.+.++|.+|++.|||..+.++ .+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 679999999999999999987 35799999999999999999999999999999776 44
Q ss_pred ce
Q 015450 154 NF 155 (406)
Q Consensus 154 ~~ 155 (406)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 43
No 257
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.4e-16 Score=117.29 Aligned_cols=88 Identities=22% Similarity=0.342 Sum_probs=81.6
Q ss_pred CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceE
Q 015450 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (406)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~ 247 (406)
......++|||+||++++++++|+++| +.||.|..+.++.++.+++++|||||+|.+.++|.+|++. ++..+.|+.|.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYF-SQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHH-HTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 345677899999999999999999999 8999999999999988999999999999999999999998 99999999999
Q ss_pred ecccCCCCcc
Q 015450 248 IGPATNKKTV 257 (406)
Q Consensus 248 v~~~~~~~~~ 257 (406)
|.++..+...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876653
No 258
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.8e-16 Score=116.86 Aligned_cols=86 Identities=24% Similarity=0.415 Sum_probs=79.5
Q ss_pred CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCC-CCCcceEEEEecCHHHHHHHHHHhcCccccCcceE
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT-GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~ 247 (406)
.....++|||+||++++++++|+++| +.|| |..+.++.+..+ ++++|||||+|.+.++|.+|+ .|++..+.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFF-RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHT-TTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHH-HHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 34567899999999999999999999 8999 999999999887 999999999999999999999 9999999999999
Q ss_pred ecccCCCCcc
Q 015450 248 IGPATNKKTV 257 (406)
Q Consensus 248 v~~~~~~~~~ 257 (406)
|.++..+...
T Consensus 88 V~~a~~~~~~ 97 (104)
T 1wi8_A 88 VDVADQAQDK 97 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876553
No 259
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.65 E-value=5.1e-16 Score=112.62 Aligned_cols=82 Identities=22% Similarity=0.425 Sum_probs=75.4
Q ss_pred CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceE
Q 015450 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (406)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~ 247 (406)
......++|||+|||.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++ +++..++|+.|.
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYF-TKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 345677899999999999999999999 899999999999999899999999999999999999996 588889999999
Q ss_pred eccc
Q 015450 248 IGPA 251 (406)
Q Consensus 248 v~~~ 251 (406)
|+++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9865
No 260
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.2e-16 Score=114.19 Aligned_cols=78 Identities=15% Similarity=0.222 Sum_probs=66.1
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcC--CCCCCCCCcce
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN--GTPMPNGEQNF 155 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~--~~~~~~~~~~~ 155 (406)
...+++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.++ +..+. ++.+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~--Gr~l 83 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLR--NQPI 83 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEET--TEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC--CcEE
Confidence 345789999999999999999999999999999998865 4899999999999999999875 44454 5666
Q ss_pred eeeecccC
Q 015450 156 RLNWASFG 163 (406)
Q Consensus 156 ~~~~~~~~ 163 (406)
++.++...
T Consensus 84 ~V~~a~~~ 91 (101)
T 2cq1_A 84 YIQYSNHK 91 (101)
T ss_dssp EEEECSCS
T ss_pred EEEEcCcc
Confidence 77776644
No 261
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-16 Score=112.59 Aligned_cols=74 Identities=26% Similarity=0.491 Sum_probs=67.7
Q ss_pred ceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
++|||+|||.++++++|+++|++||.|.+|.+..++.+++++|||||+|.+.++|++|++.++ ..+.++.+.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~ 74 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPK 74 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEE
Confidence 579999999999999999999999999999999998899999999999999999999999988 77766554443
No 262
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-15 Score=115.67 Aligned_cols=82 Identities=13% Similarity=0.213 Sum_probs=70.5
Q ss_pred CCCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcce
Q 015450 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (406)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~ 155 (406)
......++|||+|||.++|+++|+++|++||.|.+|++..+ +++++||||+|.+.++|++|++.||+..+.++ .+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l 91 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY--RL 91 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE--EC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe--EE
Confidence 34556789999999999999999999999999999999553 56889999999999999999999999998664 55
Q ss_pred eeeeccc
Q 015450 156 RLNWASF 162 (406)
Q Consensus 156 ~~~~~~~ 162 (406)
++.++..
T Consensus 92 ~V~~a~~ 98 (109)
T 1x4a_A 92 RVEFPRS 98 (109)
T ss_dssp EEECCCC
T ss_pred EEEEccc
Confidence 5555544
No 263
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=1.4e-16 Score=116.39 Aligned_cols=75 Identities=21% Similarity=0.462 Sum_probs=69.6
Q ss_pred ceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
++|||+|||.++++++|+++|++||.|.+|++.+++.+++++|||||+|.+.+ |.+|++.||+..+.++.+.|+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 68999999999999999999999999999999999989999999999999999 9999999999999776555544
No 264
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.6e-16 Score=115.57 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=70.0
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeE-EEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA-VKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~-~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
....++|||+|||+++|+++|+++|+.||.|.+ |+|+.+ .+|+++|||||+|.+.++|++||+. ++..+.++. |+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~--i~ 87 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRY--IE 87 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSC--CE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcE--EE
Confidence 456789999999999999999999999999987 888888 6899999999999999999999997 898887665 44
Q ss_pred eeecc
Q 015450 157 LNWAS 161 (406)
Q Consensus 157 ~~~~~ 161 (406)
+.++.
T Consensus 88 v~~~~ 92 (104)
T 1wg5_A 88 IFKSS 92 (104)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 44443
No 265
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=3.1e-16 Score=115.89 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
....++|||+|||+++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFF-YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHT-TTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 3456899999999999999999999 899999999999998899999999999999999999999999999999999998
Q ss_pred ccCC
Q 015450 250 PATN 253 (406)
Q Consensus 250 ~~~~ 253 (406)
++..
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 8753
No 266
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.65 E-value=3.2e-16 Score=110.12 Aligned_cols=74 Identities=9% Similarity=0.161 Sum_probs=69.0
Q ss_pred CCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEeccc
Q 015450 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (406)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~ 251 (406)
.+..|||+||++.+++++|+++| ..||.|.++++.. ++|||||+|.+.++|.+|++.||+..+.|+.|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF-~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLC-MQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHH-HHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHH-HhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 35689999999999999999999 8999999999864 5999999999999999999999999999999999887
Q ss_pred C
Q 015450 252 T 252 (406)
Q Consensus 252 ~ 252 (406)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 267
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.7e-16 Score=116.52 Aligned_cols=85 Identities=32% Similarity=0.568 Sum_probs=80.1
Q ss_pred CCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEeccc
Q 015450 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (406)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~ 251 (406)
..++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.+++..+.|+.|+|.++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIF-SEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHH-HTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHH-HhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45799999999999999999999 89999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 015450 252 TNKKTV 257 (406)
Q Consensus 252 ~~~~~~ 257 (406)
......
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 876554
No 268
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.5e-15 Score=113.91 Aligned_cols=87 Identities=25% Similarity=0.452 Sum_probs=78.8
Q ss_pred CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceE
Q 015450 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (406)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~ 247 (406)
......++|||+||+.++++++|+++| +.||.|..+.++.+..+ ++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLF-SQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHH-HHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHH-HhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 445677899999999999999999999 89999999999988533 689999999999999999999999999999999
Q ss_pred ecccCCCCcc
Q 015450 248 IGPATNKKTV 257 (406)
Q Consensus 248 v~~~~~~~~~ 257 (406)
|.++......
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2cqi_A 87 VNWATTPSSQ 96 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEECCCCccc
Confidence 9999876543
No 269
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.64 E-value=3.2e-16 Score=110.22 Aligned_cols=75 Identities=24% Similarity=0.390 Sum_probs=71.5
Q ss_pred eEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEeccc
Q 015450 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (406)
Q Consensus 175 ~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~ 251 (406)
+|||+|||.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++ +++..+.|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYF-EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHH-HTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999 899999999999998899999999999999999999997 9999999999999875
No 270
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-15 Score=115.11 Aligned_cols=87 Identities=25% Similarity=0.383 Sum_probs=79.8
Q ss_pred CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceE
Q 015450 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (406)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~ 247 (406)
......++|||+||+.++++++|+++| +.||.|..+.++.+. +++++|||||+|.+.++|.+|++.|++..+.|+.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f-~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVF-SMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHH-TTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 345567899999999999999999999 899999999999987 689999999999999999999999999999999999
Q ss_pred ecccCCCCc
Q 015450 248 IGPATNKKT 256 (406)
Q Consensus 248 v~~~~~~~~ 256 (406)
|.++.....
T Consensus 88 v~~a~~~~~ 96 (114)
T 2do0_A 88 VKMDERALP 96 (114)
T ss_dssp EEECSCCCC
T ss_pred EEEcccCCC
Confidence 999876543
No 271
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.6e-15 Score=113.73 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=66.3
Q ss_pred CCCcceeeecCCCcc-cCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 78 PGEIRTLWIGDLQYW-MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
...+++|||+|||++ +++++|+++|++||.|.+|.++++ +|||||+|++.++|.+|++.|++..+...++.++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 999999999999999999999754 4899999999999999999887544333455666
Q ss_pred eeecccC
Q 015450 157 LNWASFG 163 (406)
Q Consensus 157 ~~~~~~~ 163 (406)
+.++...
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 6666543
No 272
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.64 E-value=7e-16 Score=112.45 Aligned_cols=80 Identities=19% Similarity=0.460 Sum_probs=76.1
Q ss_pred CceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccC
Q 015450 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (406)
Q Consensus 173 ~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~ 252 (406)
.++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|+ .+++..+.|+.|+|.++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHF-HGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHH-GGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4799999999999999999999 89999999999999889999999999999999999999 899999999999999887
Q ss_pred CC
Q 015450 253 NK 254 (406)
Q Consensus 253 ~~ 254 (406)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 273
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.8e-16 Score=120.75 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=70.1
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.....++|||+|||+++|+++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|++||+ +|+..|.++.+.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567899999999999999999999999999997777777899999999999999999999999 99999976644443
No 274
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=111.30 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
....++|||+|||+++++++|+++| +.| .|..+.++.+ .+++++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F-~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFL-APL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHH-TTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHH-hhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 4567899999999999999999999 889 9999999999 689999999999999999999999 99999999999999
Q ss_pred ccCCCC
Q 015450 250 PATNKK 255 (406)
Q Consensus 250 ~~~~~~ 255 (406)
++..+.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 988754
No 275
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-15 Score=113.48 Aligned_cols=89 Identities=26% Similarity=0.325 Sum_probs=80.8
Q ss_pred CCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcc
Q 015450 166 EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (406)
Q Consensus 166 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~ 245 (406)
........++|||+||++++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++ ++..+.|+.
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~ 84 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYF-STFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRW 84 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHH-GGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHH-HhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeE
Confidence 34456677899999999999999999999 899999999999999899999999999999999999998 478899999
Q ss_pred eEecccCCCCcc
Q 015450 246 MRIGPATNKKTV 257 (406)
Q Consensus 246 i~v~~~~~~~~~ 257 (406)
|.|.++..+...
T Consensus 85 l~v~~a~~~~~~ 96 (103)
T 2cqg_A 85 CDCKLPNSKQSQ 96 (103)
T ss_dssp EEEECCCTTCCC
T ss_pred EEEEecCCCCcC
Confidence 999999886553
No 276
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=2.7e-16 Score=125.54 Aligned_cols=81 Identities=25% Similarity=0.427 Sum_probs=70.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCcEEE--------EEe---eCCCeEEEEEeCChHHHHHHHHHhcCCccCCcE
Q 015450 272 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH--------VKI---PAGKRCGFVQFADRSCAEEALRMLNGTQLGGQN 340 (406)
Q Consensus 272 ~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~--------v~i---~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 340 (406)
...+++|||+||+.++|+++|+++|+.||.|.+ +.+ .+.+|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 345789999999999999999999999998765 333 355899999999999999999999999999999
Q ss_pred EEEeeccCCCCC
Q 015450 341 IRLSWGRSPSNK 352 (406)
Q Consensus 341 l~v~~~~~~~~~ 352 (406)
|+|.|++....+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999865543
No 277
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.63 E-value=3.6e-16 Score=134.47 Aligned_cols=79 Identities=19% Similarity=0.463 Sum_probs=71.0
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhccc--ceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTG--EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
...++|||+||++++|+++|+++|++|| .|++|+|++++.+++++|||||+|.+.++|++||+.||+..|.++.+.|.
T Consensus 66 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 66 GKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp ---CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 4678999999999999999999999999 99999999999999999999999999999999999999999977655544
Q ss_pred e
Q 015450 157 L 157 (406)
Q Consensus 157 ~ 157 (406)
+
T Consensus 146 ~ 146 (229)
T 3q2s_C 146 P 146 (229)
T ss_dssp E
T ss_pred E
Confidence 3
No 278
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.63 E-value=5.8e-16 Score=112.63 Aligned_cols=83 Identities=22% Similarity=0.389 Sum_probs=76.6
Q ss_pred CCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCC-CcceEEEEecCHHHHHHHHHHhcCccccCcceEecc
Q 015450 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR-TKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (406)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 250 (406)
..++|||+||+.++++++|+++| +.||.|..+.++.+..++. ++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIF-STYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHH-HTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 45799999999999999999999 8999999999999887665 899999999999999999999999999999999998
Q ss_pred cCCCC
Q 015450 251 ATNKK 255 (406)
Q Consensus 251 ~~~~~ 255 (406)
+....
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86543
No 279
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.7e-16 Score=109.99 Aligned_cols=76 Identities=26% Similarity=0.420 Sum_probs=72.6
Q ss_pred ceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEeccc
Q 015450 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (406)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~ 251 (406)
++|||+|||.++++++|+++| +.||.|..+.+..++.+++++|||||+|.+.++|.+|++.++ ..+.|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHH-TTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999 899999999999998899999999999999999999999999 9999999999876
No 280
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=3.3e-16 Score=120.33 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=70.1
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccc---eeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCc
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGE---VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~---v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~ 153 (406)
.....++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|++||+ +++..+.++
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr-- 88 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHR-- 88 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE--
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe--
Confidence 3456889999999999999999999999999 89999999986 9999999999999999999999 899888665
Q ss_pred ceeeee
Q 015450 154 NFRLNW 159 (406)
Q Consensus 154 ~~~~~~ 159 (406)
.|++.+
T Consensus 89 ~i~V~~ 94 (118)
T 2db1_A 89 YIEVFK 94 (118)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444443
No 281
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=115.40 Aligned_cols=87 Identities=13% Similarity=0.167 Sum_probs=79.4
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCC-cceeEEE-ecCCCCCCcceEEEEecCHHHHHHHHHHhc--CccccCcc
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPS-TKGAKVV-IDRLTGRTKGYGFVRFGDESEQLRAMTEMN--GVFCSTRP 245 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~-v~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~~~g~~ 245 (406)
....++|||+||+.++++++|+++| +.||. |..+.++ .+..+++++|||||+|.+.++|.+|++.|+ +..+.|+.
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEI-AKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHH-HHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHH-HHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 4567899999999999999999999 89998 9999988 788888999999999999999999999996 58999999
Q ss_pred eEecccCCCCcc
Q 015450 246 MRIGPATNKKTV 257 (406)
Q Consensus 246 i~v~~~~~~~~~ 257 (406)
|+|.++..+...
T Consensus 84 l~V~~a~~~~~~ 95 (109)
T 2dis_A 84 IAVDWAEPEIDV 95 (109)
T ss_dssp CEEEESCSSCST
T ss_pred EEEEEcCCCCCc
Confidence 999999877654
No 282
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=112.56 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCccccHHHHH----HHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcc
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQ----ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~ 245 (406)
....++|||+||++++++++|+ ++| +.||.|.++.++.+..+ +|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F-~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAF-ARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHH-HHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhc-cccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3456799999999999999999 999 89999999999988755 889999999999999999999999999999
Q ss_pred eEecccCCCCc
Q 015450 246 MRIGPATNKKT 256 (406)
Q Consensus 246 i~v~~~~~~~~ 256 (406)
|+|.++.....
T Consensus 82 l~V~~a~~~~~ 92 (96)
T 2dgx_A 82 ILVSLATGASG 92 (96)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEEcCCCCC
Confidence 99999976543
No 283
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=2.7e-15 Score=119.69 Aligned_cols=84 Identities=12% Similarity=0.247 Sum_probs=73.9
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
+....+|||+||++.+|+++|+++|++||.|++|.+..+ ++++||||+|.+.++|++|++.|||..|.+..+.+++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 455677999999999999999999999999999998653 2568999999999999999999999999887788899
Q ss_pred eecccCCC
Q 015450 158 NWASFGAG 165 (406)
Q Consensus 158 ~~~~~~~~ 165 (406)
+|+.....
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 98876543
No 284
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=4.6e-16 Score=117.44 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=70.5
Q ss_pred CCCCCcceeeecCCCcccCHHHHhhhhhcccc---eeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCC
Q 015450 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGE---VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (406)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~---v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~ 152 (406)
......++|||+|||+++|+++|+++|+.||. |.+|+++.++. |+++|||||+|.+.++|++|++ +++..+.++.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34567899999999999999999999999998 89999999986 9999999999999999999999 8998886665
Q ss_pred ccee
Q 015450 153 QNFR 156 (406)
Q Consensus 153 ~~~~ 156 (406)
+.|.
T Consensus 84 i~V~ 87 (107)
T 2lmi_A 84 VEVY 87 (107)
T ss_dssp CCCE
T ss_pred EEEE
Confidence 4443
No 285
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.63 E-value=1.3e-15 Score=123.43 Aligned_cols=86 Identities=22% Similarity=0.284 Sum_probs=80.8
Q ss_pred CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
.....++|||+||+.++++++|+++| +.||.|..|.++.+..+++++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELF-SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 015450 249 GPATNKK 255 (406)
Q Consensus 249 ~~~~~~~ 255 (406)
.++....
T Consensus 114 ~~a~~~~ 120 (156)
T 1h2v_Z 114 DWDAGFK 120 (156)
T ss_dssp EEESCCC
T ss_pred EECCCCC
Confidence 9998644
No 286
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.5e-15 Score=114.04 Aligned_cols=82 Identities=15% Similarity=0.170 Sum_probs=73.8
Q ss_pred CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhc--CccccCcce
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN--GVFCSTRPM 246 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~--~~~~~g~~i 246 (406)
...++++|||+||++++++++|+++| +.||.|.++.++.+ +|||||+|.+.++|.+|++.++ +..+.|+.|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF-~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLG-LPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHH-TTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 35567899999999999999999999 89999999999865 7999999999999999999887 468999999
Q ss_pred EecccCCCCcc
Q 015450 247 RIGPATNKKTV 257 (406)
Q Consensus 247 ~v~~~~~~~~~ 257 (406)
+|.++..+...
T Consensus 100 ~V~~a~~k~~~ 110 (119)
T 2ad9_A 100 YIQFSNHKELK 110 (119)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCCCCC
Confidence 99999876554
No 287
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.63 E-value=8.4e-16 Score=122.37 Aligned_cols=78 Identities=19% Similarity=0.377 Sum_probs=71.5
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcc
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~ 154 (406)
.....++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..+.++.+.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 345689999999999999999999999999999999999988999999999999999999999999999988654433
No 288
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=9.2e-16 Score=126.44 Aligned_cols=80 Identities=25% Similarity=0.379 Sum_probs=73.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 271 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
.....++|||+||+.++++++|+++|+.||.|++|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999764 68999999999999999999999999999999999
Q ss_pred ccCCC
Q 015450 346 GRSPS 350 (406)
Q Consensus 346 ~~~~~ 350 (406)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 97543
No 289
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.62 E-value=8.2e-16 Score=118.30 Aligned_cols=74 Identities=27% Similarity=0.368 Sum_probs=66.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEE--EEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLV--HVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~--~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
...++|||+|||+++|+++|+++|+.| .|+ +|.|..+ +|||||+|.+.++|++||.. ++..|+||.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 456889999999999999999999999 666 8988754 78999999999999999995 78999999999988
Q ss_pred ccC
Q 015450 346 GRS 348 (406)
Q Consensus 346 ~~~ 348 (406)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 290
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=116.94 Aligned_cols=86 Identities=13% Similarity=0.202 Sum_probs=78.6
Q ss_pred CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCc-ceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcce
Q 015450 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPST-KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (406)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v-~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i 246 (406)
......++|||+||++++++++|+++| +.||.| ..+.++.+. +++++|||||+|.+.++|.+|++. ++..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i 86 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFL-EGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREA 86 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHT-TTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHH-HhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEE
Confidence 345567899999999999999999999 899999 899999998 999999999999999999999986 9999999999
Q ss_pred EecccCCCCc
Q 015450 247 RIGPATNKKT 256 (406)
Q Consensus 247 ~v~~~~~~~~ 256 (406)
.|.++..+..
T Consensus 87 ~v~~a~~~~~ 96 (114)
T 2cpy_A 87 FVHVVTLEDM 96 (114)
T ss_dssp EEEEECHHHH
T ss_pred EEEECCHHHH
Confidence 9999876553
No 291
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.62 E-value=1e-15 Score=118.99 Aligned_cols=80 Identities=19% Similarity=0.429 Sum_probs=72.0
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
.+.++|||+||+.++|+++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|+ .|++..+.++. +++.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~--l~V~ 110 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRT--IKVL 110 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEE--CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeE--EEEE
Confidence 34789999999999999999999999999999999999889999999999999999999999 79999996654 5555
Q ss_pred ecc
Q 015450 159 WAS 161 (406)
Q Consensus 159 ~~~ 161 (406)
++.
T Consensus 111 ~a~ 113 (124)
T 2jwn_A 111 PKR 113 (124)
T ss_dssp ESS
T ss_pred ECC
Confidence 544
No 292
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=5.1e-16 Score=116.75 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=66.8
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcce
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~ 155 (406)
..+.++|||+|||+++|+++|+++|+.| .|.+|+|+.++. |+++|||||+|.+.++|++|| .+|+..|.++.+.|
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V 87 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEV 87 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEE
Confidence 3457899999999999999999999999 899999999975 999999999999999999999 58998886654333
No 293
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=116.41 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=78.6
Q ss_pred CCCCCceEEEcCCCccccHHHHH---HHHHhhCCCcceeEEEecCCCC---CCcceEEEEecCHHHHHHHHHHhcCcccc
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQ---ETFRARYPSTKGAKVVIDRLTG---RTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~---~~f~~~~g~v~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~~~~~~~~ 242 (406)
.....++|||+|||+++++++|+ ++| +.||.|..+.++.+..++ +++|||||+|.+.++|.+|++.||+..++
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F-~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYF-GKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTT-TTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHh-hccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 34567899999999999999999 999 899999999999887654 55699999999999999999999999999
Q ss_pred CcceEecccCCCCc
Q 015450 243 TRPMRIGPATNKKT 256 (406)
Q Consensus 243 g~~i~v~~~~~~~~ 256 (406)
|+.|+|.++..+..
T Consensus 90 gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 90 GRTLKASLGTTKYC 103 (111)
T ss_dssp TEEEEEESCCCCSC
T ss_pred CEEEEEEecccccc
Confidence 99999999987753
No 294
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=114.67 Aligned_cols=85 Identities=19% Similarity=0.441 Sum_probs=77.7
Q ss_pred CCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcce
Q 015450 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (406)
Q Consensus 167 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i 246 (406)
.......++|||+||+.++++++|+++| +.||.|..+.++.+. +.++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMF-GQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHG-GGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHH-HhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3456677899999999999999999999 899999999998885 3489999999999999999999999999999999
Q ss_pred EecccCCC
Q 015450 247 RIGPATNK 254 (406)
Q Consensus 247 ~v~~~~~~ 254 (406)
+|.++..+
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99998764
No 295
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=3e-16 Score=123.21 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=74.4
Q ss_pred ceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeeeecccCCCCCCCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcce
Q 015450 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203 (406)
Q Consensus 124 g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~ 203 (406)
++|+.+|.-++.+..++.+.... ..+... ................++|||+|||+++++++|+++| +.|| +..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~----g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F-~~~G-i~~ 74 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQM----GRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF-SPLN-PVR 74 (139)
T ss_dssp ------------------------------------------------CCCCEECCSCCTTCCHHHHHHHH-CSCC-CSE
T ss_pred CcccccccCccccchhcccchhc-cCCCCC----CCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcC-CeE
Confidence 57778888777777776553322 111111 0000011112334566899999999999999999999 8999 679
Q ss_pred eEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCCc
Q 015450 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256 (406)
Q Consensus 204 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~~ 256 (406)
|.|+.+.. ++++|||||+|.+.++|++|+ .+++..+.++.|.|..+.....
T Consensus 75 v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 75 VHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp EECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 99999875 999999999999999999999 7899999999999988876554
No 296
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.9e-15 Score=112.57 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=69.6
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCC---cc
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE---QN 154 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~---~~ 154 (406)
....++|||+|||.++++++|+++|++||.|.+|+|+.+ |||||+|.+.++|++||+.||+..+.+.. ..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345789999999999999999999999999999999876 79999999999999999999999997633 66
Q ss_pred eeeeecccC
Q 015450 155 FRLNWASFG 163 (406)
Q Consensus 155 ~~~~~~~~~ 163 (406)
|++.++...
T Consensus 85 i~V~~a~~~ 93 (108)
T 1x4c_A 85 IRVKVDGPR 93 (108)
T ss_dssp EEEEESSCC
T ss_pred EEEEeCCCC
Confidence 777776654
No 297
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.62 E-value=3.4e-16 Score=110.12 Aligned_cols=74 Identities=16% Similarity=0.337 Sum_probs=67.7
Q ss_pred eeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
+|||+|||.++++++|+++|++||.|.+|++..++.+++++|||||+|.+.++|++|++. ++..+.++.+.++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 689999999999999999999999999999999988999999999999999999999985 88888776665543
No 298
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=3e-16 Score=117.31 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=70.1
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.....++|||+|||.++|+++|+++|+.||.|.+ .++.+..+++++|||||+|.+.++|.+|++ ||+..+.++ .++
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~--~l~ 88 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN--EIK 88 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB--CCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc--EEE
Confidence 3456789999999999999999999999999888 667777789999999999999999999998 999999765 455
Q ss_pred eeecc
Q 015450 157 LNWAS 161 (406)
Q Consensus 157 ~~~~~ 161 (406)
+.++.
T Consensus 89 V~~a~ 93 (101)
T 1fj7_A 89 LEKPK 93 (101)
T ss_dssp EECCS
T ss_pred EEEcC
Confidence 55544
No 299
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=1.2e-15 Score=119.41 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCC---cceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcce
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPS---TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~---v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i 246 (406)
....++|||+||++++++++|+++| +.||. |..+.++.+.. ++++|||||+|.+.++|++|++ +++..+.|+.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F-~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFL-SDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHT-TTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 4556899999999999999999999 89999 89999999986 9999999999999999999999 99999999999
Q ss_pred EecccCCC
Q 015450 247 RIGPATNK 254 (406)
Q Consensus 247 ~v~~~~~~ 254 (406)
+|.++...
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99887644
No 300
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=2.3e-15 Score=116.38 Aligned_cols=79 Identities=14% Similarity=0.307 Sum_probs=67.9
Q ss_pred CCcceeeecCCCcccCHHHHh----hhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcc
Q 015450 79 GEIRTLWIGDLQYWMDETYLN----TCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~ 154 (406)
...++|||+||++++++++|+ ++|++||.|++|.+.+ +++++|||||+|.+.++|..|++.|||..+.++ .
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr--~ 101 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN--P 101 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS--C
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC--E
Confidence 447899999999999999876 6999999999988753 678999999999999999999999999999765 5
Q ss_pred eeeeeccc
Q 015450 155 FRLNWASF 162 (406)
Q Consensus 155 ~~~~~~~~ 162 (406)
+++.|+..
T Consensus 102 l~V~~a~~ 109 (127)
T 2a3j_A 102 LVITFSET 109 (127)
T ss_dssp CEEEECCC
T ss_pred EEEEEccC
Confidence 56666553
No 301
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=2.7e-15 Score=112.02 Aligned_cols=75 Identities=20% Similarity=0.251 Sum_probs=67.0
Q ss_pred CCceEEEcCCCC-----CCCHHHHHHHhccCCcEEEEEeeC-------CCeEEEEEeCChHHHHHHHHHhcCCccCCcEE
Q 015450 274 NNTTVFVGNLDS-----IVTDEHLRELFSQYGQLVHVKIPA-------GKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 341 (406)
Q Consensus 274 ~~~~l~V~nlp~-----~~t~e~l~~~F~~~G~i~~v~i~~-------~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l 341 (406)
.+++|+|.||-. +.++++|+++|++||.|++|.|.+ ++|+|||+|.+.++|.+|+..|||+.|+||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 578999999963 237899999999999999999964 37999999999999999999999999999999
Q ss_pred EEeeccC
Q 015450 342 RLSWGRS 348 (406)
Q Consensus 342 ~v~~~~~ 348 (406)
+|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999864
No 302
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=113.64 Aligned_cols=84 Identities=18% Similarity=0.315 Sum_probs=76.1
Q ss_pred CCCCCceEEEcCCCccc------cHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCcccc
Q 015450 169 DDTPDHTIFVGDLAADV------TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~------~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~ 242 (406)
....+++|||+|||+++ ++++|+++| +.||.|..+.+. ..+|+++|||||+|.+.++|.+|+..||+..+.
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F-~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIF-SKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHH-GGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHH-hcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 34557899999999999 889999999 899999999887 458899999999999999999999999999999
Q ss_pred Cc-ceEecccCCCC
Q 015450 243 TR-PMRIGPATNKK 255 (406)
Q Consensus 243 g~-~i~v~~~~~~~ 255 (406)
|+ .|+|.++....
T Consensus 88 g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 88 KQHTFRVNLFTDFD 101 (105)
T ss_dssp TTCEEEEECSCCCC
T ss_pred CCceEEEEEcchHh
Confidence 98 99999987654
No 303
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=3.7e-16 Score=117.04 Aligned_cols=76 Identities=28% Similarity=0.501 Sum_probs=69.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
..++|||+||+.++++++|+++|+.||.|.+|.|..+ +|+|||+|.+.++|.+|+. ++..|+|+.|.|.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4689999999999999999999999999999999764 6899999999999999999 89999999999999986
Q ss_pred CCC
Q 015450 349 PSN 351 (406)
Q Consensus 349 ~~~ 351 (406)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 544
No 304
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=5.6e-15 Score=109.41 Aligned_cols=79 Identities=18% Similarity=0.412 Sum_probs=68.7
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
....++|||+|||.++++++|+++|++||.|.+|.+..+ ++||||+|.+.++|++|++.||+..+.+....+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345689999999999999999999999999999998764 48999999999999999999999999743566677
Q ss_pred eeccc
Q 015450 158 NWASF 162 (406)
Q Consensus 158 ~~~~~ 162 (406)
.++..
T Consensus 88 ~~a~~ 92 (97)
T 1why_A 88 DFAKS 92 (97)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 66654
No 305
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.8e-16 Score=119.98 Aligned_cols=75 Identities=25% Similarity=0.243 Sum_probs=66.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcE----EEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEE
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQL----VHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i----~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
...++|||+|||+++|+++|+++|+.||.| .+|.|..+ +|||||+|.+.++|.+||.. |+..|+||.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 346899999999999999999999999975 57777543 78999999999999999996 999999999999
Q ss_pred eeccC
Q 015450 344 SWGRS 348 (406)
Q Consensus 344 ~~~~~ 348 (406)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88764
No 306
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=118.66 Aligned_cols=84 Identities=17% Similarity=0.334 Sum_probs=77.3
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
.....+|||+||++++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFF-KKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHS-CSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 4456899999999999999999999 899999997788877899999999999999999999999 99999999999999
Q ss_pred ccCCCC
Q 015450 250 PATNKK 255 (406)
Q Consensus 250 ~~~~~~ 255 (406)
++..+.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 887644
No 307
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=115.86 Aligned_cols=84 Identities=21% Similarity=0.342 Sum_probs=78.7
Q ss_pred CCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEeccc
Q 015450 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (406)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~ 251 (406)
..++|||+||++++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++. ++..+.|+.|+|.++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYY-EQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHH-TSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 45799999999999999999999 8999999999999998999999999999999999999987 999999999999999
Q ss_pred CCCCcc
Q 015450 252 TNKKTV 257 (406)
Q Consensus 252 ~~~~~~ 257 (406)
..+...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 877653
No 308
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=116.28 Aligned_cols=87 Identities=26% Similarity=0.446 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
..++++|||+||+.++++++|+++| +.||.|..+.+..+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLF-ARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHT-HHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4567899999999999999999999 899999766554444488999999999999999999999999999999999999
Q ss_pred ccCCCCcc
Q 015450 250 PATNKKTV 257 (406)
Q Consensus 250 ~~~~~~~~ 257 (406)
++......
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99876654
No 309
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.5e-15 Score=111.13 Aligned_cols=86 Identities=31% Similarity=0.443 Sum_probs=77.4
Q ss_pred CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceE
Q 015450 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (406)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~ 247 (406)
......++|||+||+.++++++|+++| +.| ..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESF-DGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTS-TTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHh-cCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 445677899999999999999999999 655 4788888888999999999999999999999999999999999999
Q ss_pred ecccCCCCcc
Q 015450 248 IGPATNKKTV 257 (406)
Q Consensus 248 v~~~~~~~~~ 257 (406)
|.++..+...
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2fc8_A 86 LDWAKPKGEG 95 (102)
T ss_dssp EEECCCCCSS
T ss_pred EEEecCCCCC
Confidence 9999876553
No 310
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=2.3e-15 Score=115.82 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=67.5
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhccccee--EEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcc
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVV--AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~--~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~ 154 (406)
.....++|||+|||+++|+++|+++|+.| .|+ +|+|+.++. |+++|||||+|.+.++|++||+. ++..|.++.+.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 34567889999999999999999999999 566 999999986 99999999999999999999985 67888776555
Q ss_pred eee
Q 015450 155 FRL 157 (406)
Q Consensus 155 ~~~ 157 (406)
|..
T Consensus 115 V~~ 117 (126)
T 2hgm_A 115 VFK 117 (126)
T ss_dssp CEE
T ss_pred EEE
Confidence 543
No 311
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1e-14 Score=110.89 Aligned_cols=82 Identities=21% Similarity=0.275 Sum_probs=70.4
Q ss_pred CCCCCceEEEcCCCCCCC-----------HHHHHHHhccCCcEEEEEeeC--CCeEEEEEeCChHHHHHHHHHhcCCccC
Q 015450 271 DDPNNTTVFVGNLDSIVT-----------DEHLRELFSQYGQLVHVKIPA--GKRCGFVQFADRSCAEEALRMLNGTQLG 337 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~~t-----------~e~l~~~F~~~G~i~~v~i~~--~~g~afV~F~~~~~A~~A~~~l~g~~~~ 337 (406)
....+++|+|.||-.... +++|+++|++||.|.+|.|.. .+|+|||+|.+.++|.+|+..|||..|+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 345689999999954432 589999999999999998753 4899999999999999999999999999
Q ss_pred CcEEEEeeccCCCCC
Q 015450 338 GQNIRLSWGRSPSNK 352 (406)
Q Consensus 338 g~~l~v~~~~~~~~~ 352 (406)
|+.|+|.|+......
T Consensus 91 gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 91 GRQITAQAWDGTTDY 105 (112)
T ss_dssp TEECEEEECCSCCCS
T ss_pred CcEEEEEEeCCCCCc
Confidence 999999999865543
No 312
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.59 E-value=3.5e-15 Score=110.26 Aligned_cols=74 Identities=18% Similarity=0.273 Sum_probs=64.3
Q ss_pred CCCcceeeecCCCc-ccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 78 PGEIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 78 ~~~~~~l~v~~lp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
....++|||+||+. ++++++|+++|++||.|.+|++. +|||||+|.+.++|.+|++.+|+..+.++. ++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~--l~ 88 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK--LI 88 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEE--CE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEE--EE
Confidence 34588999999998 99999999999999999999983 589999999999999999999999986654 45
Q ss_pred eeecc
Q 015450 157 LNWAS 161 (406)
Q Consensus 157 ~~~~~ 161 (406)
+.++.
T Consensus 89 V~~a~ 93 (97)
T 2xnq_A 89 LEVSS 93 (97)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 54443
No 313
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.59 E-value=5.3e-15 Score=113.56 Aligned_cols=83 Identities=12% Similarity=0.302 Sum_probs=73.3
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccce-EEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGY-GFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~-a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
++....|||+||++.+|+++|+++|++||.|.+|++..+. +|| |||+|.+.++|++|++.|||..+.++.+.++
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 4556678899999999999999999999999999987643 477 9999999999999999999999988778889
Q ss_pred eeecccCCC
Q 015450 157 LNWASFGAG 165 (406)
Q Consensus 157 ~~~~~~~~~ 165 (406)
++++.....
T Consensus 100 I~~ak~~~l 108 (130)
T 3zzy_A 100 IDFSKLTSL 108 (130)
T ss_dssp EEECSCSSC
T ss_pred EEecCCCce
Confidence 998876543
No 314
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.59 E-value=2.1e-15 Score=113.83 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=76.6
Q ss_pred CCCCCceEEEcCCCccccHHHHHHHHHhhCCC---cceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcc
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPS---TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~---v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~ 245 (406)
......+|||+||++++++++|+++| +.||. |..+.++.+.. ++++|||||+|.+.++|.+|++ +++..++|+.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F-~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFF-SDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHT-TTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHH-HhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34567899999999999999999999 89888 89999999986 9999999999999999999998 9999999999
Q ss_pred eEecccCCCC
Q 015450 246 MRIGPATNKK 255 (406)
Q Consensus 246 i~v~~~~~~~ 255 (406)
|+|.++....
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999887543
No 315
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.59 E-value=1.3e-15 Score=107.06 Aligned_cols=75 Identities=23% Similarity=0.389 Sum_probs=70.7
Q ss_pred eEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEeccc
Q 015450 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (406)
Q Consensus 175 ~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~ 251 (406)
+|||+|||.++++++|+++| +.||.|..+.+..+..+++++|||||+|.+.++|.+|++ +++..+.|+.+.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYF-GGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHH-HHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999 899999999999998899999999999999999999998 5889999999999764
No 316
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=6.3e-15 Score=110.07 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
....++|||+||+.++++++|+++| +.||.|.++++. +++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f-~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLF-QNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHH-HTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHH-HhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456899999999999999999999 899999999987 458999999999999999999999999999999999
Q ss_pred ccCC
Q 015450 250 PATN 253 (406)
Q Consensus 250 ~~~~ 253 (406)
++..
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9875
No 317
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=106.06 Aligned_cols=79 Identities=19% Similarity=0.393 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
....++|||+||+.++++++|+++| +.||.|..+.++ ++||||+|.+.++|.+|++.+++..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLF-EQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHH-HTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 4567899999999999999999999 899999999886 6899999999999999999999999999999999
Q ss_pred ccCCCCcc
Q 015450 250 PATNKKTV 257 (406)
Q Consensus 250 ~~~~~~~~ 257 (406)
++..+...
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99876553
No 318
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=3.9e-14 Score=108.35 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=70.0
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccce-EEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGY-GFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~-a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
.....|||+||++.+|+++|+++|++||.|.+|++... .|| |||+|.+.++|..|++.|||..|.++.+.+++
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 44455789999999999999999999999999999652 186 99999999999999999999999887778888
Q ss_pred eecccCC
Q 015450 158 NWASFGA 164 (406)
Q Consensus 158 ~~~~~~~ 164 (406)
+++....
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 8887654
No 319
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=9.4e-16 Score=115.10 Aligned_cols=78 Identities=12% Similarity=0.075 Sum_probs=69.1
Q ss_pred ceeeecCC----CcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEcc----HHH----HHHHHH--HcCCCC
Q 015450 82 RTLWIGDL----QYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFIS----RAG----AERVLQ--TFNGTP 147 (406)
Q Consensus 82 ~~l~v~~l----p~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~----~~~----a~~a~~--~l~~~~ 147 (406)
..|||+|| ++.+++.+|+++|+.||.|.+|.++.|+.||+++|||||+|.+ +++ |.+|++ .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 888888 689999
Q ss_pred CCCCCcceeeee
Q 015450 148 MPNGEQNFRLNW 159 (406)
Q Consensus 148 ~~~~~~~~~~~~ 159 (406)
|.++.+.|.++.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 988777777653
No 320
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.2e-15 Score=110.53 Aligned_cols=83 Identities=23% Similarity=0.345 Sum_probs=74.3
Q ss_pred CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
.....++|||+||+.++++++|+++| +.||.| .++.+ .+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVF-EKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHC-SSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 45678999999999999999999999 888866 55555 58899999999999999999999999999999999999
Q ss_pred cccCCCCc
Q 015450 249 GPATNKKT 256 (406)
Q Consensus 249 ~~~~~~~~ 256 (406)
.++..+..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2fc9_A 86 ELQGPRGS 93 (101)
T ss_dssp EECSSCCC
T ss_pred EEcCCCCC
Confidence 99987654
No 321
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=106.81 Aligned_cols=80 Identities=16% Similarity=0.311 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
....++|||+||++++++++|+++| +.||.|. +.++.+ +++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F-~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRAL-RELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHH-HHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHH-HhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4457899999999999999999999 8999997 666643 678999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015450 250 PATNKK 255 (406)
Q Consensus 250 ~~~~~~ 255 (406)
++..+.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 988754
No 322
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=108.31 Aligned_cols=83 Identities=23% Similarity=0.422 Sum_probs=75.0
Q ss_pred CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceE
Q 015450 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (406)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~ 247 (406)
......++|||+||+.++++++|+++| +.||.|..+.+..+ +|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLF-EKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHT-STTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHH-hhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 345667899999999999999999999 89999999998743 79999999999999999999999999999999
Q ss_pred ecccCCCCcc
Q 015450 248 IGPATNKKTV 257 (406)
Q Consensus 248 v~~~~~~~~~ 257 (406)
|.++..+...
T Consensus 83 v~~a~~~~~~ 92 (99)
T 2cpj_A 83 VRFACHSASL 92 (99)
T ss_dssp EEESSCCSCC
T ss_pred EEEcCCCCCC
Confidence 9999876543
No 323
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.9e-15 Score=106.10 Aligned_cols=76 Identities=26% Similarity=0.457 Sum_probs=66.0
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHc-CCCCCCCCCcce
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF-NGTPMPNGEQNF 155 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l-~~~~~~~~~~~~ 155 (406)
.....++|||+|||.++++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.| ++..+.++ .+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~--~l 79 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGR--RL 79 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTE--EC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCC--EE
Confidence 3456789999999999999999999999999999999975 489999999999999999988 88888664 44
Q ss_pred eeeec
Q 015450 156 RLNWA 160 (406)
Q Consensus 156 ~~~~~ 160 (406)
++.|+
T Consensus 80 ~v~~a 84 (85)
T 2ytc_A 80 NVKWG 84 (85)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 44443
No 324
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.58 E-value=5.6e-15 Score=121.73 Aligned_cols=80 Identities=19% Similarity=0.347 Sum_probs=72.1
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.....++|||+||+.++++++|+++|++||.|++|.|..+. +++++|||||+|.+.++|.+|++.||+..+.++.+.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999976554444
Q ss_pred e
Q 015450 157 L 157 (406)
Q Consensus 157 ~ 157 (406)
+
T Consensus 163 ~ 163 (177)
T 2f3j_A 163 L 163 (177)
T ss_dssp E
T ss_pred E
Confidence 3
No 325
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=7.1e-15 Score=122.98 Aligned_cols=118 Identities=15% Similarity=0.233 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHh--cCccccCcceEecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcE
Q 015450 225 DESEQLRAMTEM--NGVFCSTRPMRIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL 302 (406)
Q Consensus 225 ~~~~a~~a~~~~--~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i 302 (406)
+.+.+..|+... ....+.+....|............ .........++|||+|||.++++++|+++|+.||.|
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~------~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v 136 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVT------DEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQV 136 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCC------HHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccc------hhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCE
Confidence 456777777766 444555555555444211110000 000011235899999999999999999999999999
Q ss_pred EEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCC
Q 015450 303 VHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 349 (406)
Q Consensus 303 ~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 349 (406)
.+|+|.++ +|+|||+|++.++|.+|+..+ +..|+|+.|+|.|++.-
T Consensus 137 ~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 137 LNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp EEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred EEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 99999753 799999999999999999865 56999999999998753
No 326
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.57 E-value=3.8e-15 Score=111.84 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=71.6
Q ss_pred ceEEEcCC----CccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecC----H-HH---HHHHHH--HhcCc
Q 015450 174 HTIFVGDL----AADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD----E-SE---QLRAMT--EMNGV 239 (406)
Q Consensus 174 ~~l~v~~l----p~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~----~-~~---a~~a~~--~~~~~ 239 (406)
..|||+|| ++.+++++|+++| +.||.|.++.++.|+.||+++|||||+|.+ . ++ |.+|+. .+++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~F-s~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYF-KKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHH-HTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 58999999 9999999999999 899999999999999999999999999996 3 32 788888 68999
Q ss_pred cccCcceEecccCCC
Q 015450 240 FCSTRPMRIGPATNK 254 (406)
Q Consensus 240 ~~~g~~i~v~~~~~~ 254 (406)
.++|+.|+|......
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999876653
No 327
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=4.9e-15 Score=113.75 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=72.6
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhCCCc----ceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcce
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARYPST----KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i 246 (406)
....+|||+|||+++++++|+++| +.||.| ..|.++.+. +++++|||||+|.+.++|.+|++. ++..+.+|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F-~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFF-GQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHH-HTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 346799999999999999999999 889875 689999884 899999999999999999999985 9999999999
Q ss_pred EecccCCC
Q 015450 247 RIGPATNK 254 (406)
Q Consensus 247 ~v~~~~~~ 254 (406)
.|..+..+
T Consensus 98 ~V~~a~~~ 105 (123)
T 2dha_A 98 ELFRSTAA 105 (123)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99877644
No 328
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.2e-14 Score=107.29 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=64.6
Q ss_pred CCCcceeeecCCCc-ccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 78 PGEIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 78 ~~~~~~l~v~~lp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
..+.++|||+|||. ++++++|+++|++||.|.+|++. +|||||+|.+.++|.+|++.|++..+.++.+.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45688999999998 99999999999999999999984 4899999999999999999999999977665555
Q ss_pred eee
Q 015450 157 LNW 159 (406)
Q Consensus 157 ~~~ 159 (406)
...
T Consensus 79 ~a~ 81 (96)
T 2kvi_A 79 VSS 81 (96)
T ss_dssp EEE
T ss_pred EcC
Confidence 543
No 329
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.56 E-value=5.5e-15 Score=111.28 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhCC-CcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
....+|||+||++++++++|+++| +.|| .|..+.+.. ++++|||||+|.+.++|++|++.||+..+.|+.|+|.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F-~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLA-RENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHH-HHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHH-HHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 346799999999999999999999 8999 899888743 3479999999999999999999999999999999999
Q ss_pred ccCCC
Q 015450 250 PATNK 254 (406)
Q Consensus 250 ~~~~~ 254 (406)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 88754
No 330
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.56 E-value=2.7e-14 Score=106.97 Aligned_cols=81 Identities=26% Similarity=0.406 Sum_probs=73.5
Q ss_pred CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
.....++|||+||+.++++++|+++| +.||.|..+.++ ++||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F-~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAF-SQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHH-HHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 34567899999999999999999999 899999998875 569999999999999999999999999999999
Q ss_pred cccCCCCccc
Q 015450 249 GPATNKKTVS 258 (406)
Q Consensus 249 ~~~~~~~~~~ 258 (406)
.++.......
T Consensus 78 ~~a~~~~~~~ 87 (103)
T 2dgu_A 78 VFAKPPDQKR 87 (103)
T ss_dssp EECCCCCCCC
T ss_pred EEcCCCcccc
Confidence 9998776543
No 331
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.56 E-value=1.6e-14 Score=108.89 Aligned_cols=79 Identities=22% Similarity=0.450 Sum_probs=72.3
Q ss_pred CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceE
Q 015450 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (406)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~ 247 (406)
......++|||+||+.++++++|+++| +.||.|..+.++ +|||||+|.+.++|.+|++.|++..+.|+.|.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F-~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIF-GPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHH-TTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 345677899999999999999999999 899999999987 78999999999999999999999999999999
Q ss_pred ecccCCCC
Q 015450 248 IGPATNKK 255 (406)
Q Consensus 248 v~~~~~~~ 255 (406)
|.++....
T Consensus 97 V~~a~~~~ 104 (108)
T 2jvo_A 97 VVYSKLPA 104 (108)
T ss_dssp EESCSCCC
T ss_pred EEEecCCC
Confidence 99988754
No 332
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=1.2e-14 Score=111.07 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=64.8
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcc---e
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN---F 155 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~---~ 155 (406)
...++|||+|||.++++++|+++|++||.|.+|.|+.+ |||||+|.+.++|++||+.||+..|.++.+. +
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45789999999999999999999999999999999765 8999999999999999999999999887622 4
Q ss_pred eeeecc
Q 015450 156 RLNWAS 161 (406)
Q Consensus 156 ~~~~~~ 161 (406)
++....
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 444443
No 333
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.56 E-value=2.2e-15 Score=112.81 Aligned_cols=75 Identities=27% Similarity=0.523 Sum_probs=66.6
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcce
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~ 155 (406)
....++|||+|||.++++++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|++|++ ++..+.++.+.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v 80 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKL 80 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEE
Confidence 3457899999999999999999999999999999999998 89999999999999999999998 666665544433
No 334
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=108.97 Aligned_cols=81 Identities=22% Similarity=0.437 Sum_probs=74.5
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
....++|||+||+.++++++|+++| +.||.|..+.++.+ +|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F-~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHH-HHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4567899999999999999999999 89999999998765 7999999999999999999999999999999999
Q ss_pred ccCCCCcc
Q 015450 250 PATNKKTV 257 (406)
Q Consensus 250 ~~~~~~~~ 257 (406)
++......
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99876553
No 335
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=6.3e-15 Score=108.97 Aligned_cols=79 Identities=28% Similarity=0.400 Sum_probs=67.6
Q ss_pred CCCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
.....++|||+|||.++++++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|++.|++..+.++ .++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 84 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR--SVS 84 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE--EEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe--EEE
Confidence 44568999999999999999999999999988766 34689999999999999999999999999998664 456
Q ss_pred eeeccc
Q 015450 157 LNWASF 162 (406)
Q Consensus 157 ~~~~~~ 162 (406)
+.++..
T Consensus 85 v~~a~~ 90 (96)
T 1fjc_A 85 LYYTGE 90 (96)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 655543
No 336
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=4.2e-16 Score=119.66 Aligned_cols=87 Identities=28% Similarity=0.369 Sum_probs=80.7
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcce--------eEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccc
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG--------AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~ 241 (406)
..++++|||+||+.++++++|+++| +.||.|.. +.++.++.+++++|||||+|.+.++|.+|++.|++..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYF-KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567899999999999999999999 89999998 88999988899999999999999999999999999999
Q ss_pred cCcceEecccCCCCcc
Q 015450 242 STRPMRIGPATNKKTV 257 (406)
Q Consensus 242 ~g~~i~v~~~~~~~~~ 257 (406)
.|+.|+|.++..+...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999876554
No 337
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=9.7e-15 Score=111.48 Aligned_cols=65 Identities=20% Similarity=0.379 Sum_probs=60.1
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCC---CCccceEEEEEccHHHHHHHHHHc
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQT---GQIEGYGFIEFISRAGAERVLQTF 143 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~~g~a~V~f~~~~~a~~a~~~l 143 (406)
....++|||+|||.++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++|++.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 34578999999999999999999999999999 888888776 799999999999999999999987
No 338
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1e-14 Score=110.58 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=66.2
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
...++|||+|||.++++++|+++|++||.|.+|.+.. +++||||+|.+.++|++|++.||+..+.++ .+++.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~V~ 79 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHV--PLYLE 79 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSS--BCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCe--EEEEE
Confidence 4578999999999999999999999999999998875 448999999999999999999999999665 45566
Q ss_pred eccc
Q 015450 159 WASF 162 (406)
Q Consensus 159 ~~~~ 162 (406)
|+..
T Consensus 80 ~a~~ 83 (111)
T 1whx_A 80 WAPI 83 (111)
T ss_dssp EEET
T ss_pred ECCC
Confidence 6543
No 339
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=4.4e-14 Score=103.41 Aligned_cols=80 Identities=18% Similarity=0.371 Sum_probs=72.9
Q ss_pred CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
.....++|||+||+.++++++|+++| +.||.|..+.++ ++||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKF-EEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHH-HTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 35567899999999999999999999 899999999886 449999999999999999999999999999999
Q ss_pred cccCCCCcc
Q 015450 249 GPATNKKTV 257 (406)
Q Consensus 249 ~~~~~~~~~ 257 (406)
.++..+...
T Consensus 77 ~~a~~~~~~ 85 (92)
T 2dgt_A 77 QLSTSRLRT 85 (92)
T ss_dssp EESSCCCSC
T ss_pred EEccCCCCC
Confidence 999876543
No 340
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-13 Score=101.55 Aligned_cols=67 Identities=19% Similarity=0.326 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHhccCCcEEEEEee-CCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCCCCC
Q 015450 285 SIVTDEHLRELFSQYGQLVHVKIP-AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 353 (406)
Q Consensus 285 ~~~t~e~l~~~F~~~G~i~~v~i~-~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 353 (406)
.++++++|+++|++||.|++|.|. +.+|||||+|.+.++|.+|+..++ .+.|+.|+|+|++.+....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCCCC
Confidence 468999999999999999999997 568999999999999999999754 4689999999998765433
No 341
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=6.9e-15 Score=109.00 Aligned_cols=83 Identities=27% Similarity=0.436 Sum_probs=74.6
Q ss_pred CCCCceEEEcCCCccccHHHHH----HHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcc
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQ----ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~ 245 (406)
..++++|||+||+.++++++|+ ++| +.||.|..+.+.. ++.++|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f-~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIF-SRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHH-GGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHH-HhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 4567899999999999999999 999 8999999988763 5677899999999999999999999999999999
Q ss_pred eEecccCCCCc
Q 015450 246 MRIGPATNKKT 256 (406)
Q Consensus 246 i~v~~~~~~~~ 256 (406)
|+|.++.....
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999887653
No 342
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.53 E-value=4.8e-14 Score=106.93 Aligned_cols=78 Identities=26% Similarity=0.480 Sum_probs=71.4
Q ss_pred CCCCceEEEcCCCcc-ccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 170 DTPDHTIFVGDLAAD-VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
....++|||+||+++ +++++|+++| +.||.|..+.+ ++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F-~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIF-SKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHH-GGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHH-HhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 445689999999999 9999999999 89999999988 4899999999999999999999999999999999
Q ss_pred cccCCCCc
Q 015450 249 GPATNKKT 256 (406)
Q Consensus 249 ~~~~~~~~ 256 (406)
.++.....
T Consensus 95 ~~a~~~~~ 102 (110)
T 1wf1_A 95 NMAGEPKP 102 (110)
T ss_dssp EESCCCCS
T ss_pred EECCCCCC
Confidence 99875443
No 343
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.2e-14 Score=103.71 Aligned_cols=79 Identities=25% Similarity=0.402 Sum_probs=72.2
Q ss_pred CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
.....++|||+||+.++++++|+++| +.||.|..+.++ ++||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLF-ERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHH-HHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 45667899999999999999999999 899999999886 459999999999999999999999999999999
Q ss_pred cccCCCCc
Q 015450 249 GPATNKKT 256 (406)
Q Consensus 249 ~~~~~~~~ 256 (406)
.++.....
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99987644
No 344
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5e-14 Score=103.58 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=70.8
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEec
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~ 249 (406)
....++|||+||++++++++|+++| +.||.|..+ +.+..+++ ||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F-~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYF-LAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHG-GGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 3456799999999999999999999 899999986 66665665 99999999999999999 99999999999999
Q ss_pred ccCCCCc
Q 015450 250 PATNKKT 256 (406)
Q Consensus 250 ~~~~~~~ 256 (406)
++..+..
T Consensus 78 ~a~~~~~ 84 (94)
T 2e5g_A 78 PREQKEF 84 (94)
T ss_dssp CSCCSCC
T ss_pred ECCcCCC
Confidence 8876544
No 345
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.6e-14 Score=104.41 Aligned_cols=80 Identities=19% Similarity=0.404 Sum_probs=71.5
Q ss_pred CCCCCCceEEEcCCCccccHHHHHHHHHhhC--CCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcc
Q 015450 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARY--PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (406)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~--g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~ 245 (406)
......++|||+||++++++++|+++| +.| |.|..+.+. +|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEF-NNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHH-HTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHH-HhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 345567899999999999999999999 899 888877653 789999999999999999999999999999
Q ss_pred eEecccCCCCc
Q 015450 246 MRIGPATNKKT 256 (406)
Q Consensus 246 i~v~~~~~~~~ 256 (406)
|+|.++..+..
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 IEVTLAKPVDK 91 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987654
No 346
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5e-14 Score=107.51 Aligned_cols=72 Identities=22% Similarity=0.379 Sum_probs=61.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEee---------CCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEE
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP---------AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 343 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~---------~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 343 (406)
...++|||+||+.++++++|+++|++||.|. +.+. +.+|||||+|.+.++|.+|++.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3568999999999999999999999999999 6664 347899999999999999999984 367777766
Q ss_pred eecc
Q 015450 344 SWGR 347 (406)
Q Consensus 344 ~~~~ 347 (406)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6544
No 347
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.4e-14 Score=105.15 Aligned_cols=80 Identities=24% Similarity=0.415 Sum_probs=70.7
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCC-cceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcC-ccccCcceE
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMR 247 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~-v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~-~~~~g~~i~ 247 (406)
....++|||+||+.++++++|+++| +.||. |..+.+. ++|||||+|.+.++|.+|++.|++ ..+.|+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLF-GDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHH-HHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4566899999999999999999999 89999 6666552 389999999999999999999999 999999999
Q ss_pred ecccCCCCcc
Q 015450 248 IGPATNKKTV 257 (406)
Q Consensus 248 v~~~~~~~~~ 257 (406)
|.++..+...
T Consensus 77 v~~a~~~~~~ 86 (93)
T 2cqh_A 77 VDYSVSKKLR 86 (93)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCcccc
Confidence 9999876543
No 348
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.53 E-value=2.5e-14 Score=106.88 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=66.1
Q ss_pred CCCceEEEcCCC--CCCC--------HHHHHHHhccCCcEEEEEeeCC--------CeEEEEEeCChHHHHHHHHHhcCC
Q 015450 273 PNNTTVFVGNLD--SIVT--------DEHLRELFSQYGQLVHVKIPAG--------KRCGFVQFADRSCAEEALRMLNGT 334 (406)
Q Consensus 273 ~~~~~l~V~nlp--~~~t--------~e~l~~~F~~~G~i~~v~i~~~--------~g~afV~F~~~~~A~~A~~~l~g~ 334 (406)
.++++|.|.|+- .++. +++|++.|++||.|++|.|.++ +|+|||+|.+.++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 357899999983 3332 3799999999999999999753 689999999999999999999999
Q ss_pred ccCCcEEEEeeccC
Q 015450 335 QLGGQNIRLSWGRS 348 (406)
Q Consensus 335 ~~~g~~l~v~~~~~ 348 (406)
.|+||.|+|++...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998753
No 349
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.6e-14 Score=108.36 Aligned_cols=76 Identities=21% Similarity=0.299 Sum_probs=63.8
Q ss_pred CCcceeee--cCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCC---CCCCc
Q 015450 79 GEIRTLWI--GDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM---PNGEQ 153 (406)
Q Consensus 79 ~~~~~l~v--~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~---~~~~~ 153 (406)
..+++||| +||+.++++++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++.|||+.+ .+..+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34788999 779999999999999999999999987643 58999999999999999999999876 33455
Q ss_pred ceeeeec
Q 015450 154 NFRLNWA 160 (406)
Q Consensus 154 ~~~~~~~ 160 (406)
.+.+.++
T Consensus 97 ~l~v~~a 103 (114)
T 2cq2_A 97 TLYLNFV 103 (114)
T ss_dssp ECEEEEE
T ss_pred EEEEEec
Confidence 5555544
No 350
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.53 E-value=1e-14 Score=105.77 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=63.3
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 157 (406)
.....+|||+|||+++|+++|+++|++||.|.+|+++++ ++|||||+|.+.++|++ +++..+.++.+.+++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 345789999999999999999999999999999999874 67999999999999983 566677667788888
Q ss_pred eecccC
Q 015450 158 NWASFG 163 (406)
Q Consensus 158 ~~~~~~ 163 (406)
.++..+
T Consensus 79 ~~a~~k 84 (89)
T 3d2w_A 79 SNAEPK 84 (89)
T ss_dssp EECC--
T ss_pred EEcCCC
Confidence 776543
No 351
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.2e-14 Score=105.13 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=66.7
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcccceeEE-EEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCccee
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAV-KVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~-~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
....++|||+|||.++++++|+++|++||.|.+| .++.++.+++ |||+|.+.++|.+|++.||+..+.++ .++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~--~l~ 85 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENF--TLK 85 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSC--BCE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCc--EEE
Confidence 3457899999999999999999999999999999 4777765433 99999999999999999999999665 455
Q ss_pred eeeccc
Q 015450 157 LNWASF 162 (406)
Q Consensus 157 ~~~~~~ 162 (406)
+.++..
T Consensus 86 V~~a~~ 91 (96)
T 2e44_A 86 VAYIPD 91 (96)
T ss_dssp EEECCC
T ss_pred EEEcCc
Confidence 555543
No 352
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-13 Score=98.13 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=66.6
Q ss_pred CCCce-EEEcCCCccccHHH----HHHHHHhhC-CCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCc
Q 015450 171 TPDHT-IFVGDLAADVTDYM----LQETFRARY-PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244 (406)
Q Consensus 171 ~~~~~-l~v~~lp~~~~~~~----l~~~f~~~~-g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~ 244 (406)
.++.+ |||+||++++++++ |+++| +.| |.|.+| ++ |+|||+|.+.++|.+|++.|++..+.||
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF-~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLS-DNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHH-HTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHH-HHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 34555 99999999999988 55899 899 498887 33 9999999999999999999999999999
Q ss_pred ceEecccCCCCcc
Q 015450 245 PMRIGPATNKKTV 257 (406)
Q Consensus 245 ~i~v~~~~~~~~~ 257 (406)
.|+|.++..+...
T Consensus 75 ~i~v~~A~~~sd~ 87 (96)
T 2diu_A 75 RIIVSFTPKNREL 87 (96)
T ss_dssp CCEEESSCCSCCC
T ss_pred eEEEEecCCCcce
Confidence 9999999987654
No 353
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.52 E-value=3.2e-14 Score=103.16 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecc
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~ 250 (406)
...++|||+|||+++++++|+++| +.| .|..+.+. +++|||||+|.+.++|.+|++.+++..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLL-KDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHT-CSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-hhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 356799999999999999999999 889 89999884 5699999999999999999999999999999999999
Q ss_pred cCCCC
Q 015450 251 ATNKK 255 (406)
Q Consensus 251 ~~~~~ 255 (406)
+....
T Consensus 75 a~~~~ 79 (88)
T 1wg1_A 75 QPTDA 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 87543
No 354
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.5e-13 Score=100.45 Aligned_cols=81 Identities=17% Similarity=0.310 Sum_probs=72.1
Q ss_pred CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceE
Q 015450 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (406)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~ 247 (406)
......++|||+|| ++++++|+++| +.||.|..+.+. +++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F-~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAF-SPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHH-TTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHH-hhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 33456789999996 99999999999 899999999883 4689999999999999999999999999999999
Q ss_pred ecccCCCCcc
Q 015450 248 IGPATNKKTV 257 (406)
Q Consensus 248 v~~~~~~~~~ 257 (406)
|.++..+...
T Consensus 81 v~~a~~~~~~ 90 (97)
T 1x5p_A 81 VNIARKQPML 90 (97)
T ss_dssp EECCSSCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 355
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.49 E-value=3e-14 Score=103.18 Aligned_cols=71 Identities=23% Similarity=0.506 Sum_probs=63.1
Q ss_pred CCCcceeeecCCCcccCHHHHhhhhhcc----c-------ceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCC
Q 015450 78 PGEIRTLWIGDLQYWMDETYLNTCFAHT----G-------EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGT 146 (406)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~ 146 (406)
....++|||+|||.++++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .||+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3568999999999999999999999999 8 8999988765 489999999999999999 99999
Q ss_pred CCCCCCcce
Q 015450 147 PMPNGEQNF 155 (406)
Q Consensus 147 ~~~~~~~~~ 155 (406)
.+.++.+.|
T Consensus 76 ~~~g~~l~V 84 (87)
T 2hzc_A 76 IFQGQSLKI 84 (87)
T ss_dssp EETTEECEE
T ss_pred EECCeEEEE
Confidence 997765444
No 356
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.49 E-value=2.5e-14 Score=114.04 Aligned_cols=86 Identities=27% Similarity=0.401 Sum_probs=74.4
Q ss_pred CCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeE-----EEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCc
Q 015450 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK-----VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~-----~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~ 244 (406)
..++++|||+||++++++++|+++| +.||.|..+. .+....+++++|||||+|.+.++|.+|+..||+..+.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIF-GRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHH-GGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 4567899999999999999999999 8999998751 122224788999999999999999999999999999999
Q ss_pred ceEecccCCCCc
Q 015450 245 PMRIGPATNKKT 256 (406)
Q Consensus 245 ~i~v~~~~~~~~ 256 (406)
.|.|.++.....
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999976543
No 357
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.49 E-value=8.9e-14 Score=105.79 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=65.6
Q ss_pred CCceEEEcCCCCC-----CCHHHHHHHhccCCcEEEEEeeCC----------CeEEEEEeCChHHHHHHHHHhcCCccCC
Q 015450 274 NNTTVFVGNLDSI-----VTDEHLRELFSQYGQLVHVKIPAG----------KRCGFVQFADRSCAEEALRMLNGTQLGG 338 (406)
Q Consensus 274 ~~~~l~V~nlp~~-----~t~e~l~~~F~~~G~i~~v~i~~~----------~g~afV~F~~~~~A~~A~~~l~g~~~~g 338 (406)
.+++|+|.|+-.. -.++||++.|++||.|.+|.|.++ +|++||+|.+.++|.+|+..|||+.|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5789999998431 246899999999999999999653 3899999999999999999999999999
Q ss_pred cEEEEeeccC
Q 015450 339 QNIRLSWGRS 348 (406)
Q Consensus 339 ~~l~v~~~~~ 348 (406)
|.|+|.|...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998753
No 358
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.48 E-value=7.6e-14 Score=125.70 Aligned_cols=77 Identities=21% Similarity=0.338 Sum_probs=68.9
Q ss_pred CCCCCceEEEcC--CCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCcc---CCc--EEEE
Q 015450 271 DDPNNTTVFVGN--LDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQL---GGQ--NIRL 343 (406)
Q Consensus 271 ~~~~~~~l~V~n--lp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~---~g~--~l~v 343 (406)
.+..+++|||+| |+.++|+++|+++|++||.|++|.+.++||||||+|++.++|++|++.|||.++ .|+ .|.|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 345688999999 578999999999999999999999999999999999999999999999999987 345 5778
Q ss_pred eecc
Q 015450 344 SWGR 347 (406)
Q Consensus 344 ~~~~ 347 (406)
.|+.
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 8774
No 359
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=7.4e-14 Score=101.27 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=64.4
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcceeee
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 158 (406)
...++|||+|||.++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++| ++..+....+.+++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEE
Confidence 35789999999999999999999999999999998864 569999999999999754 555565567788888
Q ss_pred ecccC
Q 015450 159 WASFG 163 (406)
Q Consensus 159 ~~~~~ 163 (406)
++...
T Consensus 74 ~a~~~ 78 (88)
T 1wf0_A 74 NAEPK 78 (88)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 77654
No 360
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.46 E-value=2.6e-13 Score=102.40 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=66.1
Q ss_pred CCCceEEEcCCCCCC----------CHHHHHHHhccCCcEEEEEeeCC--CeEEEEEeCChHHHHHHHHHhcCCccCCcE
Q 015450 273 PNNTTVFVGNLDSIV----------TDEHLRELFSQYGQLVHVKIPAG--KRCGFVQFADRSCAEEALRMLNGTQLGGQN 340 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~----------t~e~l~~~F~~~G~i~~v~i~~~--~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 340 (406)
..+++|.|.|+=... .++||++.|++||.|++|.|.++ +|+|||+|.+.++|.+|+..|||+.|+||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 357789999975432 23688999999999999999776 799999999999999999999999999999
Q ss_pred EEEeeccC
Q 015450 341 IRLSWGRS 348 (406)
Q Consensus 341 l~v~~~~~ 348 (406)
|+|.|+..
T Consensus 85 i~v~~~~~ 92 (114)
T 3s6e_A 85 ITAAYVPL 92 (114)
T ss_dssp CEEEEECH
T ss_pred EEEEEEcH
Confidence 99999763
No 361
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.44 E-value=5.9e-13 Score=102.31 Aligned_cols=79 Identities=16% Similarity=0.291 Sum_probs=71.3
Q ss_pred CCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEe
Q 015450 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v 248 (406)
.....++|||+|+ ++++++|+++| +.||.|..+.+. +++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F-~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAF-SPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHH-STTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHH-HccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456789999995 79999999999 999999999885 46899999999999999999999999999999999
Q ss_pred cccCCCCc
Q 015450 249 GPATNKKT 256 (406)
Q Consensus 249 ~~~~~~~~ 256 (406)
.++.....
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99987654
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=3.3e-14 Score=106.08 Aligned_cols=67 Identities=25% Similarity=0.382 Sum_probs=58.2
Q ss_pred EcCCCCCCCHHHHHHHh------------ccCCcEEEEEeeCC-----CeEEEEEeCChHHHHHHHHHhcCCccCCcEEE
Q 015450 280 VGNLDSIVTDEHLRELF------------SQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 342 (406)
Q Consensus 280 V~nlp~~~t~e~l~~~F------------~~~G~i~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 342 (406)
+.||+..+++++|+++| ++||.|.+|.|.++ +|+|||+|.+.++|.+|+..|||+.|+||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666667777666555 99999999999765 79999999999999999999999999999999
Q ss_pred Eeec
Q 015450 343 LSWG 346 (406)
Q Consensus 343 v~~~ 346 (406)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9985
No 363
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.44 E-value=5e-13 Score=99.69 Aligned_cols=84 Identities=11% Similarity=0.180 Sum_probs=73.3
Q ss_pred CCCCceEEEcCCCc-----cccHHHHHHHHHhhCCCcceeEEEecCCC-CCCcceEEEEecCHHHHHHHHHHhcCccccC
Q 015450 170 DTPDHTIFVGDLAA-----DVTDYMLQETFRARYPSTKGAKVVIDRLT-GRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243 (406)
Q Consensus 170 ~~~~~~l~v~~lp~-----~~~~~~l~~~f~~~~g~v~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g 243 (406)
..++++|+|.|+-. +.++++|++.| +.||.|.++.+..++.+ ++++|++||+|.+.++|.+|++.|||..+.|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f-~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEEC-EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHG-GGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHH-HhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 34678999999852 34789999999 89999999999988654 6889999999999999999999999999999
Q ss_pred cceEecccCCC
Q 015450 244 RPMRIGPATNK 254 (406)
Q Consensus 244 ~~i~v~~~~~~ 254 (406)
|.|.|.++...
T Consensus 84 r~i~v~~a~~~ 94 (105)
T 2pe8_A 84 RVVKACFYNLD 94 (105)
T ss_dssp EECEEEECCHH
T ss_pred cEEEEEEcCHH
Confidence 99999998753
No 364
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.43 E-value=3e-13 Score=113.09 Aligned_cols=121 Identities=11% Similarity=0.025 Sum_probs=88.6
Q ss_pred cHHHHHHHHHHc--CCCCCCCCCcceeeeecccCCCCC---CCCCCCceEEEcCCCccccHHHHHHHHHhhCCCcceeEE
Q 015450 132 SRAGAERVLQTF--NGTPMPNGEQNFRLNWASFGAGEK---RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKV 206 (406)
Q Consensus 132 ~~~~a~~a~~~l--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~ 206 (406)
+.+.+..|++.. ....+......++........... ......++|||+|||+++++++|+++| +.||.|..+++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F-~~~G~v~~v~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL-EDKGQVLNIQM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHH-TTSCCEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHH-hcCCCEEEEEE
Confidence 567777887765 333344444444433111000000 012235799999999999999999999 89999999999
Q ss_pred EecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCCC
Q 015450 207 VIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (406)
Q Consensus 207 ~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~~ 255 (406)
..+. +++++|||||+|.+.++|.+|+..+ +..+.|+.|.|.+.....
T Consensus 142 ~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 142 RRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDYF 188 (193)
T ss_dssp EECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC-
T ss_pred EECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHHH
Confidence 9886 5899999999999999999999755 458999999999876543
No 365
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.9e-12 Score=97.51 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=69.4
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC-hHHHHHHHHHhc--CCccCCcEEEEeec
Q 015450 271 DDPNNTTVFVGNLDSI-VTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD-RSCAEEALRMLN--GTQLGGQNIRLSWG 346 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~-~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~-~~~A~~A~~~l~--g~~~~g~~l~v~~~ 346 (406)
.-...+.|+|+||+.+ +++++|+++|+.||.|..|++.++...|||+|.+ .++|.+|+.+|+ +..|+|..++++..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 3456889999999999 9999999999999999999999999999999999 899999999995 77799998888654
Q ss_pred c
Q 015450 347 R 347 (406)
Q Consensus 347 ~ 347 (406)
.
T Consensus 94 ~ 94 (121)
T 1owx_A 94 E 94 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 366
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.38 E-value=1.3e-12 Score=111.56 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=71.1
Q ss_pred CCCCCceEEEcCCCccc---------cHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCc
Q 015450 169 DDTPDHTIFVGDLAADV---------TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (406)
Q Consensus 169 ~~~~~~~l~v~~lp~~~---------~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 239 (406)
.....++|||+||+.++ ++++|+++| +.||.|.+|+++. ++|||||+|.+.++|+.|++.|++.
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F-~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVF-SRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHH-HTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHH-HccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 35678899999999998 799999999 8999999999985 3899999999999999999999999
Q ss_pred cc------------cCcceEecccCCCCc
Q 015450 240 FC------------STRPMRIGPATNKKT 256 (406)
Q Consensus 240 ~~------------~g~~i~v~~~~~~~~ 256 (406)
.+ .|+.|.|.|+.....
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEeccccccccccCCCCEEEEEEccCCCC
Confidence 99 899999999986543
No 367
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.3e-11 Score=93.55 Aligned_cols=84 Identities=12% Similarity=0.214 Sum_probs=71.2
Q ss_pred CCCCCCceEEEcCCCccc-----------cHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHh
Q 015450 168 RDDTPDHTIFVGDLAADV-----------TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (406)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~-----------~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 236 (406)
....++++|+|.||-... ++++|+++| +.||.|..+.+ .+. .++|||||+|.+.++|.+|++.|
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f-~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVEC-SKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHG-GGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHH-HccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 345678899999994332 268999999 89999999955 443 37999999999999999999999
Q ss_pred cCccccCcceEecccCCCCc
Q 015450 237 NGVFCSTRPMRIGPATNKKT 256 (406)
Q Consensus 237 ~~~~~~g~~i~v~~~~~~~~ 256 (406)
|+..+.|+.|.|.++..+..
T Consensus 85 ng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 85 DGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp TTCEETTEECEEEECCSCCC
T ss_pred CCCEECCcEEEEEEeCCCCC
Confidence 99999999999999887554
No 368
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.32 E-value=2.5e-12 Score=95.91 Aligned_cols=78 Identities=15% Similarity=0.127 Sum_probs=65.0
Q ss_pred CcceeeecCC--CcccC--------HHHHhhhhhcccceeEEEEEeeCCC--CCccceEEEEEccHHHHHHHHHHcCCCC
Q 015450 80 EIRTLWIGDL--QYWMD--------ETYLNTCFAHTGEVVAVKVIRNKQT--GQIEGYGFIEFISRAGAERVLQTFNGTP 147 (406)
Q Consensus 80 ~~~~l~v~~l--p~~~~--------~~~l~~~f~~~G~v~~~~~~~~~~~--~~~~g~a~V~f~~~~~a~~a~~~l~~~~ 147 (406)
+++.|.|.|+ +.++. +++|++.|++||.|.+|+|.+++.+ ++++|++||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4788999998 44443 3689999999999999999988754 4689999999999999999999999999
Q ss_pred CCCCCcceee
Q 015450 148 MPNGEQNFRL 157 (406)
Q Consensus 148 ~~~~~~~~~~ 157 (406)
+.++.+.+..
T Consensus 84 f~GR~i~v~~ 93 (105)
T 3v4m_A 84 FANRVVVTKY 93 (105)
T ss_dssp ETTEECEEEE
T ss_pred eCCCEEEEEE
Confidence 9766554443
No 369
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=7.2e-12 Score=88.02 Aligned_cols=73 Identities=25% Similarity=0.406 Sum_probs=61.7
Q ss_pred CCCceEEEcCCC----CCCCH----HHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEe
Q 015450 273 PNNTTVFVGNLD----SIVTD----EHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 344 (406)
Q Consensus 273 ~~~~~l~V~nlp----~~~t~----e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 344 (406)
++..+|+|.-.+ .++.+ .+|.+.|+.||.|..++|..++ +||+|.+.++|.+|+. |||..++||.|+|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 445677776655 22333 6789999999999999999887 8999999999999998 99999999999999
Q ss_pred eccC
Q 015450 345 WGRS 348 (406)
Q Consensus 345 ~~~~ 348 (406)
++++
T Consensus 82 lkt~ 85 (91)
T 2dnr_A 82 LKSP 85 (91)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9874
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.27 E-value=1.5e-12 Score=97.02 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=59.1
Q ss_pred ecCCCcccCHHHHhhhh------------hcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCc
Q 015450 86 IGDLQYWMDETYLNTCF------------AHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (406)
Q Consensus 86 v~~lp~~~~~~~l~~~f------------~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~ 153 (406)
+.+|+..+++++|+++| ++||.|.+|+|.++. +++++|||||+|.+.++|.+|++.|||+.+.++.+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777887777666 999999999999876 48999999999999999999999999999977655
Q ss_pred cee
Q 015450 154 NFR 156 (406)
Q Consensus 154 ~~~ 156 (406)
.+.
T Consensus 99 ~v~ 101 (104)
T 1jmt_A 99 HAE 101 (104)
T ss_dssp CEE
T ss_pred EEE
Confidence 443
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.25 E-value=1.4e-11 Score=93.66 Aligned_cols=82 Identities=13% Similarity=0.194 Sum_probs=70.5
Q ss_pred CCceEEEcCCCc-----cccHHHHHHHHHhhCCCcceeEEEecCC----CCCCcceEEEEecCHHHHHHHHHHhcCcccc
Q 015450 172 PDHTIFVGDLAA-----DVTDYMLQETFRARYPSTKGAKVVIDRL----TGRTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (406)
Q Consensus 172 ~~~~l~v~~lp~-----~~~~~~l~~~f~~~~g~v~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~ 242 (406)
++++|+|.|+-. +-.+++|++.| ++||.|.++.|..+.. +++++|++||+|.+.++|.+|++.|||..++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef-~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHH-TTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHH-hccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 577899998732 22468999999 8999999999998864 4567899999999999999999999999999
Q ss_pred CcceEecccCCC
Q 015450 243 TRPMRIGPATNK 254 (406)
Q Consensus 243 g~~i~v~~~~~~ 254 (406)
||.|.|.+....
T Consensus 98 GR~i~v~~~~~~ 109 (118)
T 3ue2_A 98 GRKVVAEVYDQE 109 (118)
T ss_dssp TEECEEEEECHH
T ss_pred CcEEEEEEcChH
Confidence 999999987653
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1e-10 Score=85.88 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=59.9
Q ss_pred CCcceeeecCCC-------cccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCC
Q 015450 79 GEIRTLWIGDLQ-------YWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151 (406)
Q Consensus 79 ~~~~~l~v~~lp-------~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~ 151 (406)
....+|.|.-.. .++++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|..|++.+++ +.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~-- 78 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LV-- 78 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CS--
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CC--
Confidence 345667666544 458999999999999999999988 36789999999999999999998554 33
Q ss_pred CcceeeeecccC
Q 015450 152 EQNFRLNWASFG 163 (406)
Q Consensus 152 ~~~~~~~~~~~~ 163 (406)
...+++.|+...
T Consensus 79 g~~l~V~~a~~~ 90 (100)
T 2d9o_A 79 DNPLKISWLEGQ 90 (100)
T ss_dssp SSBCEEECSSCC
T ss_pred CCeEEEEEccCC
Confidence 456677776544
No 373
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.22 E-value=1.3e-11 Score=111.18 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=64.1
Q ss_pred CCCcceeeecC--CCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCC---CCC
Q 015450 78 PGEIRTLWIGD--LQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP---NGE 152 (406)
Q Consensus 78 ~~~~~~l~v~~--lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~---~~~ 152 (406)
...+++|||+| |+..+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||+.+. ++.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45688999999 578999999999999999999987753 4599999999999999999999998873 333
Q ss_pred cceeeeec
Q 015450 153 QNFRLNWA 160 (406)
Q Consensus 153 ~~~~~~~~ 160 (406)
+.+.+++.
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 45555554
No 374
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=7.5e-11 Score=83.19 Aligned_cols=74 Identities=27% Similarity=0.428 Sum_probs=63.3
Q ss_pred CCCCCceEEEcCCCCC-----CCH----HHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEE
Q 015450 271 DDPNNTTVFVGNLDSI-----VTD----EHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 341 (406)
Q Consensus 271 ~~~~~~~l~V~nlp~~-----~t~----e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l 341 (406)
..++.-+|+|.-++.+ +.+ .+|.+.|+.||+|..++|..++ +||+|.+.++|.+||+ |||..++||.|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 3456778888877632 222 5689999999999999999997 9999999999999999 99999999999
Q ss_pred EEeecc
Q 015450 342 RLSWGR 347 (406)
Q Consensus 342 ~v~~~~ 347 (406)
+|++..
T Consensus 88 ~V~~k~ 93 (95)
T 1ufw_A 88 KISGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEeccC
Confidence 999854
No 375
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.03 E-value=7.4e-10 Score=83.44 Aligned_cols=79 Identities=8% Similarity=0.069 Sum_probs=64.8
Q ss_pred CCCceEEEcCCCc----------cccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCcc
Q 015450 171 TPDHTIFVGDLAA----------DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (406)
Q Consensus 171 ~~~~~l~v~~lp~----------~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 240 (406)
.+++.|.|.|+=. +-.+++|++.| ++||.|.++.+..+. .+|++||+|.+.++|.+|++.|||..
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f-~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEEC-NKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHH-TTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHH-hccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3566777777521 22346889999 899999998885542 58999999999999999999999999
Q ss_pred ccCcceEecccCCC
Q 015450 241 CSTRPMRIGPATNK 254 (406)
Q Consensus 241 ~~g~~i~v~~~~~~ 254 (406)
++||.|.|.++...
T Consensus 80 f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 80 FAGKMITAAYVPLP 93 (114)
T ss_dssp ETTEECEEEEECHH
T ss_pred ECCEEEEEEEEcHH
Confidence 99999999988644
No 376
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.01 E-value=1.3e-09 Score=78.19 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=68.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccC-----CcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEee
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQY-----GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 345 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~-----G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 345 (406)
..++|-|-|||..+++..|+.+.+.+ |.|++|.+..+-+-|+|+|.|...|.+|.-+|+|.+|+||.|+|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 46889999999999999999999999 9999999999999999999999999999999999999999999853
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=3.4e-09 Score=79.81 Aligned_cols=73 Identities=15% Similarity=0.053 Sum_probs=60.1
Q ss_pred CCcceeeecCCCcc-cCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEcc-HHHHHHHHHHcCCCCCCCCCccee
Q 015450 79 GEIRTLWIGDLQYW-MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFIS-RAGAERVLQTFNGTPMPNGEQNFR 156 (406)
Q Consensus 79 ~~~~~l~v~~lp~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~-~~~a~~a~~~l~~~~~~~~~~~~~ 156 (406)
...+.|+|+||+.+ ++.++|+++|+.||.|..|.+.++.. .|||+|.+ .++|..|++.+|...+..+...++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45788999999999 99999999999999999999998874 69999999 899999999986433333333333
Q ss_pred e
Q 015450 157 L 157 (406)
Q Consensus 157 ~ 157 (406)
+
T Consensus 90 ~ 90 (121)
T 1owx_A 90 W 90 (121)
T ss_dssp E
T ss_pred E
Confidence 3
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.90 E-value=2.4e-09 Score=91.80 Aligned_cols=61 Identities=21% Similarity=0.214 Sum_probs=56.1
Q ss_pred CCHHHHHHHhccCCcEEEEEee----------CCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 287 VTDEHLRELFSQYGQLVHVKIP----------AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 287 ~t~e~l~~~F~~~G~i~~v~i~----------~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
-.+++|++.|++||.|.++.|. +.+|++||+|.+.++|.+|+..|||+.|+||.|+|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3568999999999999999996 447899999999999999999999999999999999865
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=2e-08 Score=70.55 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=58.7
Q ss_pred CCceEEEcCCC----ccccH----HHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccC
Q 015450 172 PDHTIFVGDLA----ADVTD----YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243 (406)
Q Consensus 172 ~~~~l~v~~lp----~~~~~----~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g 243 (406)
+..||+|.-.+ .+... .+|.+.| +.||.|..++++.++ +||+|.+.++|.+|++ |++..+.|
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F-~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQF-ASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHH-HTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHH-HhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 44567776654 12222 6788999 889999999998764 8999999999999998 99999999
Q ss_pred cceEecccCC
Q 015450 244 RPMRIGPATN 253 (406)
Q Consensus 244 ~~i~v~~~~~ 253 (406)
|.|+|+.+++
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999988774
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=6.3e-08 Score=68.33 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=60.5
Q ss_pred CCCCceEEEcCCCcc-----ccH----HHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCcc
Q 015450 170 DTPDHTIFVGDLAAD-----VTD----YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (406)
Q Consensus 170 ~~~~~~l~v~~lp~~-----~~~----~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 240 (406)
-.+..||+|.-++.+ +.. .+|.+.| +.||.|..++++.++ +||+|.+.++|.+|++ |++..
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F-~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTL-GSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHH-HHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHH-HHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 345678888877632 222 5688999 889999999998774 9999999999999998 99999
Q ss_pred ccCcceEecccC
Q 015450 241 CSTRPMRIGPAT 252 (406)
Q Consensus 241 ~~g~~i~v~~~~ 252 (406)
+.||.|+|++..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998654
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.57 E-value=1.2e-07 Score=81.20 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=61.1
Q ss_pred ccHHHHHHHHHhhCCCcceeEEEecCC----CCCCcceEEEEecCHHHHHHHHHHhcCccccCcceEecccCCC
Q 015450 185 VTDYMLQETFRARYPSTKGAKVVIDRL----TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (406)
Q Consensus 185 ~~~~~l~~~f~~~~g~v~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i~v~~~~~~ 254 (406)
-.+++|++.| +.||.|.++.+..+.. +++++|++||+|.+.++|.+|+..|+|..++||.|.+.+....
T Consensus 141 e~~~dl~~e~-~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHH-TTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHH-HccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 4668999999 8999999999986543 4589999999999999999999999999999999999887643
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.44 E-value=6.9e-07 Score=64.18 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=67.4
Q ss_pred CCceEEEcCCCCCC-CH----HHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 274 NNTTVFVGNLDSIV-TD----EHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 274 ~~~~l~V~nlp~~~-t~----e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
-.++|+|.||+.++ .. +.++++|..|+.+......++-.-..|.|.+.++|.+|...||+..|.|+.|+|-|+..
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 35789999998865 22 57799999999999999999977889999999999999999999999999999999884
Q ss_pred C
Q 015450 349 P 349 (406)
Q Consensus 349 ~ 349 (406)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=8.7e-06 Score=58.12 Aligned_cols=73 Identities=23% Similarity=0.270 Sum_probs=63.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccC-----CcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccC
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQY-----GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 348 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~-----G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 348 (406)
..++|.|.|||.+++++.|.-+|++- |.|.+++... +.|+|+|.+.+.|++.++. ..+.|.+..|.|.-.-.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 46789999999999999999999872 6899999877 7899999999999999995 57889999999976443
Q ss_pred C
Q 015450 349 P 349 (406)
Q Consensus 349 ~ 349 (406)
.
T Consensus 84 ~ 84 (104)
T 2dhx_A 84 R 84 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.25 E-value=5.4e-06 Score=59.62 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=64.7
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhhC-----CCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcc
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRARY-----PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~-----g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~ 245 (406)
...++|-+-+||..+++..|+.++ +.+ |.+..+.+..| .+-|+|+|.+...|-+|...|+|.+|.|+.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lv-e~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFL-QEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHH-HHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHH-hhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 346789999999999999999999 888 99998888877 467999999999999999999999999999
Q ss_pred eEec
Q 015450 246 MRIG 249 (406)
Q Consensus 246 i~v~ 249 (406)
|++.
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8874
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.03 E-value=1.5e-05 Score=58.97 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=61.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCC-cEEEEeecc
Q 015450 273 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGG-QNIRLSWGR 347 (406)
Q Consensus 273 ~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g-~~l~v~~~~ 347 (406)
...+-|.|.+.+... .+.|.++|++||+|.+.......++..|+|.+..+|++||.. ||..|++ ..|-|....
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 346778899998874 667889999999999999877889999999999999999996 9999985 566776643
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=0.00016 Score=51.66 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=69.8
Q ss_pred CCCceEEEcCCCccccHHHHHHHHHhh----CCCcceeEEEecCCCCCCcceEEEEecCHHHHHHHHHHhcCccccCcce
Q 015450 171 TPDHTIFVGDLAADVTDYMLQETFRAR----YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (406)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~----~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~g~~i 246 (406)
....+|.|.|||.+++++.|.-+|++. -|+|..+.... +-|+|+|.+.+.|++.++ ...+.+.+..+
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEE
Confidence 445789999999999999999999652 35666665532 568999999999999986 34788889999
Q ss_pred EecccCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCC
Q 015450 247 RIGPATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 288 (406)
Q Consensus 247 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t 288 (406)
.|...... ...+|++.+|+..++
T Consensus 77 sV~P~~~~-------------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPR-------------------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCC-------------------CCCCCCCCSCCCCCC
T ss_pred EEEcCCCC-------------------CcceEeeecCCCCCC
Confidence 98664443 346788999988764
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.77 E-value=7e-05 Score=52.94 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=57.5
Q ss_pred ceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCcc--ceEEEEEccHHHHHHHHHHcCCCCCCC
Q 015450 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIE--GYGFIEFISRAGAERVLQTFNGTPMPN 150 (406)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~--g~a~V~f~~~~~a~~a~~~l~~~~~~~ 150 (406)
++|.|++||+.+|++++.+.++.+..+.....+..+.+.+.. .-|||.|.+.+++....+.++|..+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 579999999999999999999999887777777665443322 459999999999999999999987743
No 388
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.53 E-value=4.9e-05 Score=56.97 Aligned_cols=71 Identities=14% Similarity=0.279 Sum_probs=55.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCcEEE-EEeeC-------------------CCeEEEEEeCChHHHHHHHHHhcCC
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQYGQLVH-VKIPA-------------------GKRCGFVQFADRSCAEEALRMLNGT 334 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~-v~i~~-------------------~~g~afV~F~~~~~A~~A~~~l~g~ 334 (406)
..-|.|-+.|.+.++ .+.++|++||.|.+ +...+ +.++..|+|++..+|.+||.. ||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 355778888766544 56689999999976 32221 356889999999999999996 999
Q ss_pred ccCCcEEEEeecc
Q 015450 335 QLGGQNIRLSWGR 347 (406)
Q Consensus 335 ~~~g~~l~v~~~~ 347 (406)
.|+|..|-|....
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988887654
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.44 E-value=0.00055 Score=48.35 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=58.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC--------CeEEEEEeCChHHHHHHHHHhcCCccCCc-----EEE
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG--------KRCGFVQFADRSCAEEALRMLNGTQLGGQ-----NIR 342 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~--------~g~afV~F~~~~~A~~A~~~l~g~~~~g~-----~l~ 342 (406)
++|.|++||.++|++++.+.++....+....+..+ -..|+|.|.+.+++..-...++|+.|-+. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 47899999999999999999999988877776443 25899999999999999999999986322 234
Q ss_pred Eeecc
Q 015450 343 LSWGR 347 (406)
Q Consensus 343 v~~~~ 347 (406)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66654
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.42 E-value=0.00093 Score=47.09 Aligned_cols=56 Identities=16% Similarity=0.288 Sum_probs=44.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhc
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 332 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~ 332 (406)
...+++| ++|.++...||.++|+.||.|. |+-. |...|||.|.+.+.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wi-dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWI-DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEE-ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEE-cCCeEEEEecCHHHHHHHHHhcc
Confidence 4566667 9999999999999999998442 2111 24589999999999999999764
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.34 E-value=0.00033 Score=50.33 Aligned_cols=70 Identities=11% Similarity=0.009 Sum_probs=57.2
Q ss_pred cceeeecCCCccc-CH----HHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCCCCCcce
Q 015450 81 IRTLWIGDLQYWM-DE----TYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (406)
Q Consensus 81 ~~~l~v~~lp~~~-~~----~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~~~~~~~ 155 (406)
.++|+|.||+.++ +. +.++++|+.|+.+..+...++- .=..|.|.+.++|.+|...|++..+.|..+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3679999999876 32 5678999999999999888764 35789999999999999999999997764433
Q ss_pred e
Q 015450 156 R 156 (406)
Q Consensus 156 ~ 156 (406)
-
T Consensus 79 Y 79 (104)
T 1wey_A 79 Y 79 (104)
T ss_dssp E
T ss_pred E
Confidence 3
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.27 E-value=0.00083 Score=47.32 Aligned_cols=56 Identities=13% Similarity=0.174 Sum_probs=46.1
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcC
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~ 144 (406)
....++| +.|.++...||.++|+.||. ..|+.+-| .-|||.|.+++.|..|+..++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3445666 99999999999999999984 44666655 389999999999999998764
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.20 E-value=0.00039 Score=49.33 Aligned_cols=71 Identities=10% Similarity=0.025 Sum_probs=52.9
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCcc--ceEEEEEccHHHHHHHHHHcCCCCCCC
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIE--GYGFIEFISRAGAERVLQTFNGTPMPN 150 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~--g~a~V~f~~~~~a~~a~~~l~~~~~~~ 150 (406)
.+-+|.|+.||+.+|++++.+.++.+-.+.....+..+.+.+.. .-|||.|.+.+++....+.++|..+..
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 46689999999999999999998886554433333333222221 448999999999999999999977743
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.13 E-value=0.001 Score=47.09 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=43.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhc
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 332 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~ 332 (406)
..++| ++|.++...||.++|+.||.| .|.-. +-..|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wi-dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEE-ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEE-cCCeEEEEecCHHHHHHHHHhcc
Confidence 45667 999999999999999999843 23322 24589999999999999999764
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.08 E-value=0.00099 Score=47.10 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=44.8
Q ss_pred eeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcC
Q 015450 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144 (406)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~ 144 (406)
.++| +.|.++...||.++|+.|| -..|+.+-| .-|||.|.+++.|..|+..++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3455 9999999999999999998 345666665 389999999999999999765
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.89 E-value=0.0023 Score=45.40 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=56.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCC--------CeEEEEEeCChHHHHHHHHHhcCCccCCc-----E
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG--------KRCGFVQFADRSCAEEALRMLNGTQLGGQ-----N 340 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~--------~g~afV~F~~~~~A~~A~~~l~g~~~~g~-----~ 340 (406)
.+-+|.|+.||..+||+++.+.++..-.+....+..+ -..|+|.|.+.++...-...++|..|-+. .
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 3567999999999999999999887656544444332 24789999999999999999999986322 3
Q ss_pred EEEeecc
Q 015450 341 IRLSWGR 347 (406)
Q Consensus 341 l~v~~~~ 347 (406)
..|++|-
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4566653
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.82 E-value=0.00057 Score=63.72 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=43.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCe-EEEEEeCChHHHHHHHHH
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR-CGFVQFADRSCAEEALRM 330 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g-~afV~F~~~~~A~~A~~~ 330 (406)
.++|+|. .+..+++.+|.++|++||.|.++.+-+++| ||.|||.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4789997 788999999999999999999999988865 999999999999977654
No 398
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.57 E-value=0.0057 Score=45.24 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=51.4
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCCCCCC
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~~~~~ 149 (406)
...+.|.|-+.+... ...|...|++||.|++..... ...+-.|.|.++.+|++||. .||..+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~ 84 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFG 84 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEec
Confidence 457789999999885 566889999999999887621 23699999999999999998 4887774
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.84 E-value=0.0039 Score=58.16 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=43.8
Q ss_pred CcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHH
Q 015450 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142 (406)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~ 142 (406)
..|+|+|. .+..+++.+|.++|++||.|.++.+-.++. -||.|||.+.+++..+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 36889998 799999999999999999999998876542 6999999999999988643
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.96 E-value=0.3 Score=36.58 Aligned_cols=77 Identities=12% Similarity=0.161 Sum_probs=51.3
Q ss_pred CceEEEcCCCccccHHHHHHHHHhhCCCcceeEEEec---------CCCC-----CCcceEEEEecCHHHHHHHHHHhcC
Q 015450 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVID---------RLTG-----RTKGYGFVRFGDESEQLRAMTEMNG 238 (406)
Q Consensus 173 ~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~---------~~~~-----~~~g~afv~f~~~~~a~~a~~~~~~ 238 (406)
...|.|-+.|.+.+ ..+.+.| ++||.|.+..-..+ .... ....+..|+|++..+|.+|+. .||
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~F-s~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYF-QEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHH-GGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred ceEEEEEecCHHHH-HHHHHHH-HhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 45677888866655 5666778 88999876321110 0001 024577899999999999995 788
Q ss_pred ccccCcceEecccC
Q 015450 239 VFCSTRPMRIGPAT 252 (406)
Q Consensus 239 ~~~~g~~i~v~~~~ 252 (406)
..++|..|-|.+..
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 88888766665543
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.60 E-value=1.9 Score=41.02 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=45.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhc
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 332 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~ 332 (406)
....++|+ ++..+...+|.+.|+.||.| +|.. -+...|||.|.+.+.|..++..+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~w-iddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISW-IDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEE-CSSSEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEE-EcCCeEEEEECCHHHHHHHHHHHH
Confidence 34566676 88899999999999999954 3333 345679999999999999999875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.49 E-value=1.4 Score=42.00 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=45.0
Q ss_pred cceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHcCC
Q 015450 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG 145 (406)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l~~ 145 (406)
...++|+ ++..+...+|.++|+.||. .+|+.+.+ ..|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3455665 8889999999999999995 45555444 3799999999999999998764
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=78.46 E-value=13 Score=25.26 Aligned_cols=57 Identities=11% Similarity=0.062 Sum_probs=45.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhc
Q 015450 274 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 332 (406)
Q Consensus 274 ~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~ 332 (406)
.++.|.|-|+|..+-..++.-.....|---.|+.. .|.|.|+|.+.++..-|+.+|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--SSCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--cCeeEEEecCChHHHHHHHHHH
Confidence 35778899999999888887777777766566554 3589999999999999998873
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=72.32 E-value=12 Score=24.73 Aligned_cols=58 Identities=9% Similarity=0.259 Sum_probs=38.0
Q ss_pred CCHHHHHHHhccCC-----cEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeecc
Q 015450 287 VTDEHLRELFSQYG-----QLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 347 (406)
Q Consensus 287 ~t~e~l~~~F~~~G-----~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 347 (406)
++.-+|..++..-+ .|-.|+|..+ +.||+-... .|.+++..|++..+.|+.++|+.++
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMDN--ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECSS--CEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeCC--cEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 56667777776544 4566777554 777777544 4777888899999999999998764
No 405
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=68.47 E-value=12 Score=24.29 Aligned_cols=55 Identities=7% Similarity=-0.034 Sum_probs=45.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHH
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRM 330 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~ 330 (406)
..++.|.++.=.--...|.+.++. ..|..+.+....+.+.|+|.+.++..++|+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 356788888877778889999999 8899999988888899999866666677775
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=65.80 E-value=29 Score=23.62 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=46.3
Q ss_pred CCcceeeecCCCcccCHHHHhhhhhcccceeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHHc
Q 015450 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143 (406)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a~V~f~~~~~a~~a~~~l 143 (406)
...|-|.|-|+|..+-..++.-.....|.-.-|..+. |.|.+.|.+.++-..|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 4578889999999999988888888877655555442 67999999999999999874
No 407
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=57.36 E-value=22 Score=22.35 Aligned_cols=55 Identities=5% Similarity=0.105 Sum_probs=41.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC---hHHHHHHHHH
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD---RSCAEEALRM 330 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~---~~~A~~A~~~ 330 (406)
.++.|.++.=..-...|...+.....|.++.+....+.+.|+|.+ .++..++++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 357788876665668899999998889999998888889999853 3444555554
No 408
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=54.87 E-value=31 Score=22.04 Aligned_cols=55 Identities=9% Similarity=0.067 Sum_probs=42.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeC----ChHHHHHHHHH
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFA----DRSCAEEALRM 330 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~----~~~~A~~A~~~ 330 (406)
.++.|.++.=.--...|...++....|.++.+....+.+.|+|. +.++..++++.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35677787655566788999999888999988877888999996 45566667765
No 409
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=49.11 E-value=21 Score=25.67 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=30.7
Q ss_pred ccccHHHHHHHHHhhCCCcceeEEEec--CC--CCCCcceEEEEecCHHHHHHH
Q 015450 183 ADVTDYMLQETFRARYPSTKGAKVVID--RL--TGRTKGYGFVRFGDESEQLRA 232 (406)
Q Consensus 183 ~~~~~~~l~~~f~~~~g~v~~~~~~~~--~~--~~~~~g~afv~f~~~~~a~~a 232 (406)
...+..+|++.+++.|+.-.++.++.. .. .+++.|||.| |++.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 467888999988788876555544432 22 3456666655 6666665543
No 410
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=48.59 E-value=43 Score=20.25 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=38.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC---hHHHHHHHHH
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD---RSCAEEALRM 330 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~---~~~A~~A~~~ 330 (406)
++.|.++.-..-...|++.+.....|.++.+....+.+.|+|.. .++..+++..
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHH
Confidence 35566665444557788999988889999998888889999864 3444555554
No 411
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=47.64 E-value=19 Score=25.58 Aligned_cols=49 Identities=12% Similarity=0.134 Sum_probs=29.9
Q ss_pred ccccHHHHHHHHHhhCCCcceeEEEecC----CCCCCcceEEEEecCHHHHHHH
Q 015450 183 ADVTDYMLQETFRARYPSTKGAKVVIDR----LTGRTKGYGFVRFGDESEQLRA 232 (406)
Q Consensus 183 ~~~~~~~l~~~f~~~~g~v~~~~~~~~~----~~~~~~g~afv~f~~~~~a~~a 232 (406)
.+.+..+|++.+++.|+.-.++.++..- ..+++.|||.| |++.+.+.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 5678899999997888765555444322 23455666655 5555555443
No 412
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=42.93 E-value=56 Score=20.01 Aligned_cols=54 Identities=7% Similarity=0.058 Sum_probs=39.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCCh---HHHHHHHHH
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADR---SCAEEALRM 330 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~---~~A~~A~~~ 330 (406)
++.|.++.-..-...|...+.....|.++.+....+.+.|+|... ++..+++..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence 466777765555678888898888899999988888899998743 344455554
No 413
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=42.51 E-value=57 Score=20.00 Aligned_cols=54 Identities=4% Similarity=0.094 Sum_probs=38.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCCh---HHHHHHHHH
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADR---SCAEEALRM 330 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~---~~A~~A~~~ 330 (406)
++.|.++.-..-...|...+.....|.++.+....+.+.|+|... ++..+++..
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence 567777765445577888999888899999988888899999743 344455554
No 414
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=42.35 E-value=19 Score=25.57 Aligned_cols=48 Identities=19% Similarity=0.109 Sum_probs=29.3
Q ss_pred ccccHHHHHHHHHhhCCCcceeEEEec----CCCCCCcceEEEEecCHHHHHH
Q 015450 183 ADVTDYMLQETFRARYPSTKGAKVVID----RLTGRTKGYGFVRFGDESEQLR 231 (406)
Q Consensus 183 ~~~~~~~l~~~f~~~~g~v~~~~~~~~----~~~~~~~g~afv~f~~~~~a~~ 231 (406)
...+..+|++.+++.|+.-.++.++.. -..+++.|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 567888999988777776544444332 223456666655 566655543
No 415
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=41.89 E-value=19 Score=25.42 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=27.3
Q ss_pred ccccHHHHHHHHHhhCCCcceeEEEecCCC----CCCcceEEEEecCHHHH
Q 015450 183 ADVTDYMLQETFRARYPSTKGAKVVIDRLT----GRTKGYGFVRFGDESEQ 229 (406)
Q Consensus 183 ~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~----~~~~g~afv~f~~~~~a 229 (406)
...+..+|++.+++.|+.-.++.++..-.| +++.|||.| |++.+.|
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~ 78 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSA 78 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHH
Confidence 467888899888777766555555443333 355566655 3444433
No 416
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.24 E-value=86 Score=21.38 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=36.9
Q ss_pred EcCCCCCCCHHHHHHHhcc-CC-cEEEEEee---CCCeEEEEEeCChHHHHHHHHH
Q 015450 280 VGNLDSIVTDEHLRELFSQ-YG-QLVHVKIP---AGKRCGFVQFADRSCAEEALRM 330 (406)
Q Consensus 280 V~nlp~~~t~e~l~~~F~~-~G-~i~~v~i~---~~~g~afV~F~~~~~A~~A~~~ 330 (406)
+-.+....+..+|++.++. |+ .|.+|... .+..-|+|++..-.+|......
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 3445678899999998886 55 56666553 3445799999988888776554
No 417
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=40.23 E-value=42 Score=25.55 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=30.8
Q ss_pred ccccHHHHHHHHHhhCCCcceeEEEecCC----CCCCcceEEEEecCHHHHHHH
Q 015450 183 ADVTDYMLQETFRARYPSTKGAKVVIDRL----TGRTKGYGFVRFGDESEQLRA 232 (406)
Q Consensus 183 ~~~~~~~l~~~f~~~~g~v~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a 232 (406)
...+..+|++.++..|+.-.++.++..-. .+.+.|||.| |++.+.+...
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 46788899999977787655555544322 2455666666 5666655543
No 418
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=40.21 E-value=64 Score=19.85 Aligned_cols=55 Identities=9% Similarity=-0.004 Sum_probs=40.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC----hHHHHHHHHH
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRM 330 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~----~~~A~~A~~~ 330 (406)
.++.|.++.-..-...|...+.....|.++.+....+.+.|+|.. .++..+++..
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 357788876544556788889888889999998888889999863 3444555654
No 419
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=40.04 E-value=61 Score=19.61 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=40.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC----hHHHHHHHHH
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRM 330 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~----~~~A~~A~~~ 330 (406)
++.|.++.-..-...|...+.....|.++.+....+.+.|+|.. .++..+++..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46788876666667888999988889999998888889999974 3444455554
No 420
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=39.59 E-value=77 Score=20.64 Aligned_cols=55 Identities=4% Similarity=0.079 Sum_probs=42.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC----hHHHHHHHHH
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRM 330 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~----~~~A~~A~~~ 330 (406)
.++.|.++.-..-...|...+.....|.++.+....+.+.|+|.. .++..+++..
T Consensus 11 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 69 (84)
T 1q8l_A 11 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEA 69 (84)
T ss_dssp EEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 457788887666667899999998889999998888899999963 3445566665
No 421
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=38.37 E-value=69 Score=19.71 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=40.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC----hHHHHHHHHH
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRM 330 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~----~~~A~~A~~~ 330 (406)
++.|.++.-..-...|...+.....|.++.+....+.+.|+|.. .++..+++..
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 63 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATAD 63 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHH
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHh
Confidence 46677776666667888999988889999998888889999864 3445556655
No 422
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=37.91 E-value=68 Score=21.48 Aligned_cols=56 Identities=9% Similarity=0.198 Sum_probs=41.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC----hHHHHHHHHHh
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRML 331 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~----~~~A~~A~~~l 331 (406)
.++.|.++.-..-...|...++..-.|.++.+....+.+.|+|.. .++..+++..+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 356777765444556788999988889999998888899999963 34555666653
No 423
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=36.57 E-value=43 Score=25.11 Aligned_cols=48 Identities=27% Similarity=0.437 Sum_probs=30.7
Q ss_pred ccccHHHHHHHHHhhCCCcceeEEEecC----CCCCCcceEEEEecCHHHHHH
Q 015450 183 ADVTDYMLQETFRARYPSTKGAKVVIDR----LTGRTKGYGFVRFGDESEQLR 231 (406)
Q Consensus 183 ~~~~~~~l~~~f~~~~g~v~~~~~~~~~----~~~~~~g~afv~f~~~~~a~~ 231 (406)
...+..+|++.++..|+.-.++.++..- ..+++.|||.| |++.+.+..
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 4678899999998888765555444322 23456666665 566666554
No 424
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=35.73 E-value=69 Score=23.74 Aligned_cols=34 Identities=9% Similarity=0.032 Sum_probs=21.0
Q ss_pred CCcEEEEEeeCCCeEE--EEE-eCChHHHHHHHHHhc
Q 015450 299 YGQLVHVKIPAGKRCG--FVQ-FADRSCAEEALRMLN 332 (406)
Q Consensus 299 ~G~i~~v~i~~~~g~a--fV~-F~~~~~A~~A~~~l~ 332 (406)
+=+|.+|++..|..+| ||+ |-+.++...+++.|+
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHHH
Confidence 3589999999997655 555 445444444444343
No 425
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=34.96 E-value=91 Score=21.44 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=27.2
Q ss_pred cEEEEEeeCC-CeEEEEEeCChHHHHHHHHHhcCC
Q 015450 301 QLVHVKIPAG-KRCGFVQFADRSCAEEALRMLNGT 334 (406)
Q Consensus 301 ~i~~v~i~~~-~g~afV~F~~~~~A~~A~~~l~g~ 334 (406)
.|.++.++.. .||.||+++..++...++....|.
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 3777777654 899999999999988888876654
No 426
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=34.60 E-value=1.2e+02 Score=21.32 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=42.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC----hHHHHHHHHH
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRM 330 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~----~~~A~~A~~~ 330 (406)
.++.|.++.-..-...|...+...-.|.++.+....+.+.|+|.. .++..+++..
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~ 68 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 68 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 457788887666778899999998889999998888899999974 3444556665
No 427
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=34.54 E-value=1.2e+02 Score=23.79 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=34.0
Q ss_pred eEEEcCCCC---------CCCHHHHHHHh--ccCCcEEEEEeeCC---CeEEEEEeCChH-HHHHHHH
Q 015450 277 TVFVGNLDS---------IVTDEHLRELF--SQYGQLVHVKIPAG---KRCGFVQFADRS-CAEEALR 329 (406)
Q Consensus 277 ~l~V~nlp~---------~~t~e~l~~~F--~~~G~i~~v~i~~~---~g~afV~F~~~~-~A~~A~~ 329 (406)
.+.|-|++. ..+..+|++.| +.|..+.-.-+-.. +|++.|+|.+-- --..|++
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 455667665 13558899977 99987664444322 578999997544 3344444
No 428
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=34.13 E-value=11 Score=29.03 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=19.1
Q ss_pred HHHHHHhccCCcEEEEEeeCCCeEEEEEeC
Q 015450 290 EHLRELFSQYGQLVHVKIPAGKRCGFVQFA 319 (406)
Q Consensus 290 e~l~~~F~~~G~i~~v~i~~~~g~afV~F~ 319 (406)
+|+.++|...|.|+.... .|||+||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--CCCeeEEeeC
Confidence 566678888888887654 6789999976
No 429
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=34.04 E-value=83 Score=19.86 Aligned_cols=55 Identities=9% Similarity=0.068 Sum_probs=41.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC----hHHHHHHHHHh
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRML 331 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~----~~~A~~A~~~l 331 (406)
++.|.++.-..-...|...+.....|.++.+....+.+.|+|.. .++..+++..+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 6 YIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46777776655667889999988889998888778889999963 34455566653
No 430
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=33.81 E-value=83 Score=19.29 Aligned_cols=55 Identities=7% Similarity=0.058 Sum_probs=39.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeC---ChHHHHHHHHHh
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFA---DRSCAEEALRML 331 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~---~~~~A~~A~~~l 331 (406)
++.|.++.-..-...|...+.....|.++.+....+.+.|+|. +.+...+++..+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHC
Confidence 4667776554455678888888888999988888888999986 234445556553
No 431
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=33.71 E-value=91 Score=19.73 Aligned_cols=57 Identities=11% Similarity=0.172 Sum_probs=42.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC----hHHHHHHHHHh
Q 015450 275 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRML 331 (406)
Q Consensus 275 ~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~----~~~A~~A~~~l 331 (406)
..++.|.++.-..-...|...+.....|.++.+....+.+.|+|.. .++..+++..+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 3467788887777778899999988888888887777888999864 34455666653
No 432
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=31.27 E-value=97 Score=19.28 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=39.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC----hHHHHHHHHH
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRM 330 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~----~~~A~~A~~~ 330 (406)
++.|.++.-..-...|...+.....|.++.+....+.+.|+|.. .++..+++..
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDD 62 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46677775444557788889888889999998888899999964 3445556665
No 433
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=30.82 E-value=59 Score=22.28 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=21.6
Q ss_pred ceeEEEEEeeCCCCCccceEEEEEcc
Q 015450 107 EVVAVKVIRNKQTGQIEGYGFIEFIS 132 (406)
Q Consensus 107 ~v~~~~~~~~~~~~~~~g~a~V~f~~ 132 (406)
.|.+|++.+-...|+.++||-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47888888877778999999999974
No 434
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=30.77 E-value=63 Score=19.90 Aligned_cols=55 Identities=7% Similarity=0.175 Sum_probs=38.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC----hHHHHHHHHHh
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRML 331 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~----~~~A~~A~~~l 331 (406)
++.|.++.-..-...|...+.....|.++.+....+.+.|+|.. .++..+++..+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHC
Confidence 46677765444456788888888788888888788889999974 34455566653
No 435
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=29.27 E-value=1.6e+02 Score=21.70 Aligned_cols=119 Identities=10% Similarity=0.154 Sum_probs=74.5
Q ss_pred eEEEcCCCccccHHHHHHHHHhhCCCcceeEEEecCCCCCCcceEEEEecC----HHHHHHHHHHhcCccccCcceEecc
Q 015450 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD----ESEQLRAMTEMNGVFCSTRPMRIGP 250 (406)
Q Consensus 175 ~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~~~~~g~afv~f~~----~~~a~~a~~~~~~~~~~g~~i~v~~ 250 (406)
++.|.++.-......+...+ .....|..+.+-.. .+.+.|.|.. .+....+++.+ +....
T Consensus 9 ~~~v~gm~C~~C~~~ie~~l-~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~-G~~~~-------- 72 (151)
T 1p6t_A 9 AMQVSGMTCAACAARIEKGL-KRMPGVTDANVNLA------TETVNVIYDPAETGTAAIQEKIEKL-GYHVV-------- 72 (151)
T ss_dssp EEEEESCCSSHHHHHHHHHH-TTSSSEEEEEEEGG------GTEEEEEECTTTSCHHHHHHHHHHH-TCEEC--------
T ss_pred EEEECCCcCHHHHHHHHHHH-hcCCCeeEEEEEcc------CCEEEEEEcCCcCCHHHHHHHHHHc-CCccc--------
Confidence 46667766666666777777 44545555543222 3345566652 23334444322 11100
Q ss_pred cCCCCcccccccCCccccCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeC----ChHHHHH
Q 015450 251 ATNKKTVSASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFA----DRSCAEE 326 (406)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~----~~~~A~~ 326 (406)
....++.|.++.-..-...|...++....|.++.+....+.+.|+|. +.++..+
T Consensus 73 ----------------------~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~ 130 (151)
T 1p6t_A 73 ----------------------TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKE 130 (151)
T ss_dssp ----------------------CEEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHH
T ss_pred ----------------------ccccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHH
Confidence 01235788888877777889999999989999988888889999997 4455666
Q ss_pred HHHHh
Q 015450 327 ALRML 331 (406)
Q Consensus 327 A~~~l 331 (406)
++..+
T Consensus 131 ~i~~~ 135 (151)
T 1p6t_A 131 AVDKL 135 (151)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 67654
No 436
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=28.80 E-value=1.1e+02 Score=18.96 Aligned_cols=45 Identities=2% Similarity=0.121 Sum_probs=37.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD 320 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~ 320 (406)
.++.|.++.-..-...|...+.....|.++.+....+.+.|+|..
T Consensus 6 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 50 (75)
T 1yjr_A 6 LELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDP 50 (75)
T ss_dssp EEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECT
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECC
Confidence 467888887766678899999998889999998888899999974
No 437
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=28.55 E-value=97 Score=18.45 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=38.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC----hHHHHHHHHH
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRM 330 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~----~~~A~~A~~~ 330 (406)
++.|.++.-..-...|...+...-.|.++.+....+.+.|+|.. .+...+++..
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (69)
T 2qif_A 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIED 62 (69)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46677765444456688888888889888888888889999974 3444555554
No 438
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=28.42 E-value=1.1e+02 Score=18.96 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=40.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC--hHHHHHHHHH
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD--RSCAEEALRM 330 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~--~~~A~~A~~~ 330 (406)
++.|.++.-..-...|...+.....|.++.+....+.+.|+|.. .+...+++..
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~ 61 (73)
T 1mwy_A 6 SWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQK 61 (73)
T ss_dssp EEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHH
Confidence 57788887666667888999988889999998888889999975 2334455554
No 439
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=27.82 E-value=68 Score=22.60 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=21.7
Q ss_pred ceeEEEEEeeCCCCCccceEEEEEcc
Q 015450 107 EVVAVKVIRNKQTGQIEGYGFIEFIS 132 (406)
Q Consensus 107 ~v~~~~~~~~~~~~~~~g~a~V~f~~ 132 (406)
.|.+|++.+-...|+.++||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47888888877678999999999974
No 440
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=27.27 E-value=13 Score=33.42 Aligned_cols=14 Identities=43% Similarity=0.351 Sum_probs=9.2
Q ss_pred CCCCHHHHHHHhcc
Q 015450 285 SIVTDEHLRELFSQ 298 (406)
Q Consensus 285 ~~~t~e~l~~~F~~ 298 (406)
.++++++|+++...
T Consensus 227 ~~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 227 ATVTLELLDELTHE 240 (358)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 35678888777543
No 441
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.16 E-value=51 Score=21.09 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=14.8
Q ss_pred CcEEEEEeeCCCeEEEEEeCChH
Q 015450 300 GQLVHVKIPAGKRCGFVQFADRS 322 (406)
Q Consensus 300 G~i~~v~i~~~~g~afV~F~~~~ 322 (406)
|+|+.|. ..+..|+|.|+|-.
T Consensus 28 GtV~kV~--~~~~~ClV~FeD~s 48 (68)
T 2e5p_A 28 GTIKKVD--SAREVCLVQFEDDS 48 (68)
T ss_dssp EEEEEEE--TTTTEEEEEETTTE
T ss_pred eEEEEEe--cCCcEEEEEEccCC
Confidence 5666554 45779999998743
No 442
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=27.02 E-value=1.6e+02 Score=20.58 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=45.1
Q ss_pred EcCCCCCCCHHHHHHHhc-cCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCccCCcEEEEeeccCCC
Q 015450 280 VGNLDSIVTDEHLRELFS-QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 350 (406)
Q Consensus 280 V~nlp~~~t~e~l~~~F~-~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 350 (406)
|-.++..++-+||..... .||.-.++... .....|-..+.+|-.+||+.|+-. -.-+.|+|-....+.
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~--n~EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~~ 89 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYT--NNELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVINGS 89 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEEC--SSSSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECCC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEe--cceEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCCC
Confidence 334566777777766554 57876666665 335788899999999999987643 344455555444443
No 443
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=26.99 E-value=1.5e+02 Score=21.26 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=43.0
Q ss_pred ceEEEcCCCCCCCHH------HHHHHhccCCcEEEEEeeCCCeEEEEEe--CChHHHHHHHHHhc-------CC---ccC
Q 015450 276 TTVFVGNLDSIVTDE------HLRELFSQYGQLVHVKIPAGKRCGFVQF--ADRSCAEEALRMLN-------GT---QLG 337 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e------~l~~~F~~~G~i~~v~i~~~~g~afV~F--~~~~~A~~A~~~l~-------g~---~~~ 337 (406)
-.|.|.++|+.+..| .|+..|.- .|..-.+..+.|...|.| +|.+.-++|++.|- |. .++
T Consensus 43 l~i~itgvpeqvrkelakeaerl~~efni--~v~y~imgsgsgvm~i~f~gddlea~ekalkemirqarkfagtvtytl~ 120 (170)
T 4hhu_A 43 LVIVITGVPEQVRKELAKEAERLKAEFNI--NVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLS 120 (170)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHHTC--EEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHhcce--EEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEe
Confidence 457789999876543 34444431 344444455678888888 47788888887652 22 256
Q ss_pred CcEEEEeec
Q 015450 338 GQNIRLSWG 346 (406)
Q Consensus 338 g~~l~v~~~ 346 (406)
|..|.+...
T Consensus 121 gn~l~i~it 129 (170)
T 4hhu_A 121 GNRLVIVIT 129 (170)
T ss_dssp SSEEEEEEE
T ss_pred CCEEEEEEe
Confidence 777766554
No 444
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=26.28 E-value=77 Score=22.56 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=21.5
Q ss_pred ceeEEEEEeeCCCCCccceEEEEEcc
Q 015450 107 EVVAVKVIRNKQTGQIEGYGFIEFIS 132 (406)
Q Consensus 107 ~v~~~~~~~~~~~~~~~g~a~V~f~~ 132 (406)
.|.+|++.+-...|+.++||-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 47788888877778999999999974
No 445
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=26.26 E-value=51 Score=25.98 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=30.6
Q ss_pred CHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhc
Q 015450 288 TDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 332 (406)
Q Consensus 288 t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~ 332 (406)
..++|+.+|+.|-..+ .+|.+.+-.|.+.+.|.+.|.+.+
T Consensus 131 ~l~~i~~fF~~YK~le-----~gK~v~v~gw~~~~~A~~~I~~~~ 170 (173)
T 3d53_A 131 LKKRIVHFFEHYKDLE-----KGKWVKVTGWGDKVKAETLIKEGI 170 (173)
T ss_dssp HHHHHHHHHHHTTTTS-----TTCCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc-----CCCcEEEccCcCHHHHHHHHHHHH
Confidence 4578999999994432 256677888999999999988653
No 446
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=25.29 E-value=1.2e+02 Score=18.58 Aligned_cols=55 Identities=5% Similarity=0.106 Sum_probs=40.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC----hHHHHHHHHH
Q 015450 276 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRM 330 (406)
Q Consensus 276 ~~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~----~~~A~~A~~~ 330 (406)
.++.|.++.-..-...|...+...-.|.++.+....+.+.|+|.+ .++..+++..
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 66 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEK 66 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 457788887666667788999888888888887777888899863 3444555654
No 447
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=23.85 E-value=1.3e+02 Score=20.37 Aligned_cols=51 Identities=14% Similarity=0.266 Sum_probs=35.1
Q ss_pred EEcCCCCCCCHHHHHHHhcc-CC-cEEEEEee---CCCeEEEEEeCChHHHHHHHH
Q 015450 279 FVGNLDSIVTDEHLRELFSQ-YG-QLVHVKIP---AGKRCGFVQFADRSCAEEALR 329 (406)
Q Consensus 279 ~V~nlp~~~t~e~l~~~F~~-~G-~i~~v~i~---~~~g~afV~F~~~~~A~~A~~ 329 (406)
++-.+..+.+..+|++.++. |+ .|.+|... ++.--|+|++..-++|.....
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 34446678899999998876 55 56666543 334579999988777655443
No 448
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=23.58 E-value=1.3e+02 Score=18.09 Aligned_cols=54 Identities=7% Similarity=0.139 Sum_probs=40.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCC----hHHHHHHHHH
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRM 330 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~----~~~A~~A~~~ 330 (406)
++.|.++.-..-...|...+...-.|.++.+....+.+.|+|.+ .++..+++..
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 63 (71)
T 2ldi_A 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 63 (71)
T ss_dssp EEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46788876655567788899888889899888888889999874 3444555554
No 449
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=23.24 E-value=1.4e+02 Score=18.43 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=36.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeC-ChHHHHHHHHH
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFA-DRSCAEEALRM 330 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~-~~~~A~~A~~~ 330 (406)
++.| ++.=.--...|++.++....| ++.+....+.+.|++. +.++..++++.
T Consensus 5 ~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 5 EFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp EEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHT
T ss_pred EEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHHH
Confidence 4667 665444556788888877778 9998888888888885 45555666664
No 450
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=23.22 E-value=62 Score=25.46 Aligned_cols=40 Identities=18% Similarity=0.354 Sum_probs=30.5
Q ss_pred CHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhc
Q 015450 288 TDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 332 (406)
Q Consensus 288 t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~ 332 (406)
..++|+.+|+.|-..+ .+|.+.+-.|.+.+.|.+.|...+
T Consensus 127 ~l~~i~~fF~~YK~le-----~gK~v~~~gw~~~~~A~~~I~~~~ 166 (173)
T 1qez_A 127 TKNKIVHFFEHYKELE-----PGKYVKISGWGSATEAKNRIQLAI 166 (173)
T ss_dssp HHHHHHHHHHHTTTTS-----TTCCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc-----CCCceEEccccCHHHHHHHHHHHH
Confidence 4578999999994432 256677788999999999888754
No 451
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=23.00 E-value=34 Score=22.07 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=10.6
Q ss_pred CCCeEEEEEeCChH
Q 015450 309 AGKRCGFVQFADRS 322 (406)
Q Consensus 309 ~~~g~afV~F~~~~ 322 (406)
..+..|+|+|+|..
T Consensus 39 ~~~~~ClV~FeD~S 52 (69)
T 2xk0_A 39 QTSDQYLIRFDDQS 52 (69)
T ss_dssp ECSSCEEEEETTCC
T ss_pred cCCceEEEEecCCc
Confidence 45778999998754
No 452
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=22.96 E-value=67 Score=20.60 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=13.9
Q ss_pred CcEEEEEeeCCCeEEEEEeCCh
Q 015450 300 GQLVHVKIPAGKRCGFVQFADR 321 (406)
Q Consensus 300 G~i~~v~i~~~~g~afV~F~~~ 321 (406)
|+|++|. ..++.|+|.|.|-
T Consensus 32 gtI~~V~--~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 32 GTIKKIN--ILKQSCFIIFEDS 51 (66)
T ss_dssp EEEEEEE--TTTTEEEEEETTT
T ss_pred eEEEEEc--cCCcEEEEEEccC
Confidence 4555544 4578999999864
No 453
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=22.94 E-value=66 Score=21.22 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=14.8
Q ss_pred CcEEEEEeeCCCeEEEEEeCChH
Q 015450 300 GQLVHVKIPAGKRCGFVQFADRS 322 (406)
Q Consensus 300 G~i~~v~i~~~~g~afV~F~~~~ 322 (406)
|+|++|. ..+..|+|.|+|..
T Consensus 45 GTI~kV~--~~~e~ClV~F~D~S 65 (79)
T 2m0o_A 45 GTIKKVD--SAREVCLVQFEDDS 65 (79)
T ss_dssp EEEEEEE--TTTTEEEEEETTSC
T ss_pred EEEEEec--cCCCEEEEEEcCCC
Confidence 6666655 45678999998753
No 454
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=22.79 E-value=74 Score=31.21 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=36.0
Q ss_pred CCCHHHHHHHhc----cCCcEEEEEee-----CCCeEEEEEeCChHHHHHHHHHhcC
Q 015450 286 IVTDEHLRELFS----QYGQLVHVKIP-----AGKRCGFVQFADRSCAEEALRMLNG 333 (406)
Q Consensus 286 ~~t~e~l~~~F~----~~G~i~~v~i~-----~~~g~afV~F~~~~~A~~A~~~l~g 333 (406)
+.+--||..+|- .+|.|+++.+. ..+..++|.|.|.++|.+++..+-.
T Consensus 354 ~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~ 410 (658)
T 4bby_A 354 MSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAK 410 (658)
T ss_dssp CCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHH
Confidence 334446788873 58999999883 2356789999999999999887643
No 455
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.84 E-value=1.5e+02 Score=20.24 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=37.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeC-ChHHHHHHHHH
Q 015450 277 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFA-DRSCAEEALRM 330 (406)
Q Consensus 277 ~l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~-~~~~A~~A~~~ 330 (406)
++.|. +.=.--...|++.+.....|.++.+....+.+.|+|. +.++..++|+.
T Consensus 22 ~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~ 75 (98)
T 2crl_A 22 EFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEG 75 (98)
T ss_dssp EEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHH
Confidence 45565 4433345788999999888999999888888889885 44555556654
No 456
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=21.78 E-value=2e+02 Score=19.76 Aligned_cols=43 Identities=7% Similarity=0.027 Sum_probs=30.5
Q ss_pred HHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhcCCc
Q 015450 292 LRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ 335 (406)
Q Consensus 292 l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~ 335 (406)
|+++-+.+| +.+|.|..+.|..+|.=.+.+.+++|+..++..+
T Consensus 37 Ik~I~e~tG-v~~IdI~eddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 37 IQQARKVPG-VTAIELDEDTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp HHHHHTSTT-EEEEEEETTTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhC-CeEEEEEcCCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 444444444 3347776666888887789999999999887654
No 457
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=21.36 E-value=1.7e+02 Score=20.71 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=20.8
Q ss_pred CcEEEEEeeCCCeEEEEEe--C-ChHHHHHHHHHhc
Q 015450 300 GQLVHVKIPAGKRCGFVQF--A-DRSCAEEALRMLN 332 (406)
Q Consensus 300 G~i~~v~i~~~~g~afV~F--~-~~~~A~~A~~~l~ 332 (406)
=+|.+|++..|..+|-|-+ - +.++.+.+++.|+
T Consensus 36 vtVt~V~vs~Dl~~AkVyvs~~g~~~~~~~~~~~L~ 71 (106)
T 2kzf_A 36 VTFSRVELSKDKRYADVYVSFLGTPEERKETVEILN 71 (106)
T ss_dssp CCEEEEEECTTSCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCEEEEEEEeCCChhhHHHHHHHHH
Confidence 3789999999977664444 3 3444445554443
No 458
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=21.32 E-value=76 Score=22.63 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=28.1
Q ss_pred cEEEEEeeCC-CeEEEEEeCChHHHHHHHHHhcCCc
Q 015450 301 QLVHVKIPAG-KRCGFVQFADRSCAEEALRMLNGTQ 335 (406)
Q Consensus 301 ~i~~v~i~~~-~g~afV~F~~~~~A~~A~~~l~g~~ 335 (406)
.|.++....+ +||-|||=.+..++..|+..+.+..
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 4677776655 9999999999999999998765443
No 459
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=20.79 E-value=60 Score=19.93 Aligned_cols=52 Identities=6% Similarity=0.128 Sum_probs=34.2
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHH
Q 015450 278 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRM 330 (406)
Q Consensus 278 l~V~nlp~~~t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~ 330 (406)
+.|.++.=..-...|...++.. .|.++.+....+.+.|+|...++..+++..
T Consensus 5 ~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 5 LYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCHHHHHHHHHT
T ss_pred EEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 4555554333446677888877 787888877788889998865333445543
No 460
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=20.49 E-value=1.8e+02 Score=21.91 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=35.0
Q ss_pred EcCCCCCCCHHHHHHHhcc-CC-cEEEEEee---CCCeEEEEEeCChHHHHHHHHH
Q 015450 280 VGNLDSIVTDEHLRELFSQ-YG-QLVHVKIP---AGKRCGFVQFADRSCAEEALRM 330 (406)
Q Consensus 280 V~nlp~~~t~e~l~~~F~~-~G-~i~~v~i~---~~~g~afV~F~~~~~A~~A~~~ 330 (406)
+--+....+..+|++.++. |+ .|.+|... .+.--|||++....+|......
T Consensus 83 vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 83 VFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHh
Confidence 3335667889899888876 45 56666553 2345799999888777765544
No 461
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=20.28 E-value=65 Score=25.39 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=29.7
Q ss_pred CHHHHHHHhccCCcEEEEEeeCCCeEEEEEeCChHHHHHHHHHhc
Q 015450 288 TDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 332 (406)
Q Consensus 288 t~e~l~~~F~~~G~i~~v~i~~~~g~afV~F~~~~~A~~A~~~l~ 332 (406)
..++|+.+|+.|-..+ -..+|.+.+-.|.+.+.|.+.|...+
T Consensus 128 ~l~~i~~fF~~YK~le---~k~gK~v~~~gw~~~~~A~~~I~~~~ 169 (174)
T 2prd_A 128 VKQEIQHFFETYKALE---AKKGKWVKVTGWRDRKAALEEVRACI 169 (174)
T ss_dssp HHHHHHHHHHHTTGGG---GGGTCCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc---ccCCCceEECcccCHHHHHHHHHHHH
Confidence 3578899999994331 00155677778999999999888654
No 462
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=20.22 E-value=25 Score=31.95 Aligned_cols=9 Identities=22% Similarity=0.132 Sum_probs=3.9
Q ss_pred ccHHHHHHH
Q 015450 185 VTDYMLQET 193 (406)
Q Consensus 185 ~~~~~l~~~ 193 (406)
.++.++..+
T Consensus 158 l~~~~~~~i 166 (400)
T 1nxk_A 158 FTEREASEI 166 (400)
T ss_dssp CBHHHHHHH
T ss_pred CCHHHHHHH
Confidence 344444443
Done!