Query 015452
Match_columns 406
No_of_seqs 137 out of 213
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 12:52:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dom_A RNA polymerase II trans 100.0 3.2E-33 1.1E-37 236.6 6.1 87 320-406 19-105 (108)
2 3dgp_A RNA polymerase II trans 100.0 2.9E-31 9.9E-36 214.3 6.8 76 331-406 2-77 (80)
3 3jth_A Transcription activator 82.5 4.8 0.00016 31.4 7.6 81 31-113 11-92 (98)
4 3pqk_A Biofilm growth-associat 82.2 4.1 0.00014 32.1 7.1 79 32-112 12-91 (102)
5 3f6o_A Probable transcriptiona 80.2 6.5 0.00022 32.0 7.9 80 31-112 6-86 (118)
6 3cuo_A Uncharacterized HTH-typ 78.4 14 0.00049 28.1 9.0 81 31-112 12-93 (99)
7 1r1u_A CZRA, repressor protein 73.1 13 0.00045 29.5 7.7 79 32-112 15-94 (106)
8 2oqg_A Possible transcriptiona 69.8 21 0.00071 28.1 8.1 77 31-109 9-86 (114)
9 2kko_A Possible transcriptiona 67.3 12 0.00042 30.0 6.3 79 33-113 15-94 (108)
10 3f6v_A Possible transcriptiona 65.0 17 0.0006 31.3 7.2 78 33-112 48-126 (151)
11 2jsc_A Transcriptional regulat 59.3 23 0.00079 28.8 6.7 78 35-114 13-91 (118)
12 1y0u_A Arsenical resistance op 59.0 17 0.0006 28.1 5.6 64 34-103 22-85 (96)
13 1u2w_A CADC repressor, cadmium 54.7 25 0.00085 28.7 6.1 80 32-112 31-111 (122)
14 2zkz_A Transcriptional repress 53.5 28 0.00095 27.3 6.0 81 30-112 14-95 (99)
15 1b0n_B Protein (SINI protein); 50.2 13 0.00043 27.8 3.1 24 297-320 19-42 (57)
16 3df8_A Possible HXLR family tr 49.4 12 0.0004 30.4 3.2 68 36-104 20-89 (111)
17 2hzt_A Putative HTH-type trans 48.9 41 0.0014 26.7 6.4 67 36-103 7-77 (107)
18 1r1t_A Transcriptional repress 48.8 64 0.0022 26.4 7.8 75 33-109 36-111 (122)
19 2fsw_A PG_0823 protein; alpha- 44.2 47 0.0016 26.2 6.1 69 34-103 16-88 (107)
20 1ub9_A Hypothetical protein PH 43.4 47 0.0016 25.1 5.8 72 39-111 12-87 (100)
21 2lkp_A Transcriptional regulat 43.0 78 0.0027 25.1 7.3 78 33-112 22-101 (119)
22 1p6r_A Penicillinase repressor 37.1 23 0.0008 26.5 3.0 48 44-91 10-60 (82)
23 2z99_A Putative uncharacterize 35.9 39 0.0013 31.5 4.8 77 28-108 78-165 (219)
24 3s4e_A Dual specificity protei 34.6 22 0.00076 29.4 2.7 49 292-346 92-144 (144)
25 1z7u_A Hypothetical protein EF 33.7 1.1E+02 0.0037 24.3 6.7 71 34-105 13-87 (112)
26 1t6s_A Conserved hypothetical 33.7 25 0.00086 31.2 3.0 78 27-108 71-160 (162)
27 1xmk_A Double-stranded RNA-spe 31.7 83 0.0028 24.5 5.4 59 45-103 13-71 (79)
28 3lab_A Putative KDPG (2-keto-3 31.2 53 0.0018 30.5 4.9 93 250-352 37-141 (217)
29 1yyv_A Putative transcriptiona 31.1 86 0.0029 26.0 5.8 72 34-106 26-101 (131)
30 3kfw_X Uncharacterized protein 29.7 1.5E+02 0.0051 27.8 7.8 68 41-111 2-73 (247)
31 3lmm_A Uncharacterized protein 27.6 53 0.0018 34.6 4.7 61 44-108 431-496 (583)
32 2k4b_A Transcriptional regulat 26.6 37 0.0013 27.3 2.6 52 40-92 33-87 (99)
33 1b4a_A Arginine repressor; hel 26.0 88 0.003 27.2 5.1 28 202-229 35-62 (149)
34 1w8i_A Putative VAPC ribonucle 26.0 63 0.0022 27.0 4.1 111 253-382 3-121 (156)
35 2d1h_A ST1889, 109AA long hypo 25.5 2.1E+02 0.0072 21.3 8.1 75 37-112 16-97 (109)
36 1zzw_A Dual specificity protei 25.5 1.2E+02 0.0041 24.8 5.8 47 292-344 94-144 (149)
37 2fu4_A Ferric uptake regulatio 25.1 1.1E+02 0.0037 22.7 5.0 58 44-101 18-83 (83)
38 2hl7_A Cytochrome C-type bioge 24.7 52 0.0018 26.3 3.1 25 294-318 49-73 (84)
39 3df8_A Possible HXLR family tr 24.6 61 0.0021 26.0 3.6 36 202-238 57-92 (111)
40 2kw0_A CCMH protein; oxidoredu 23.5 56 0.0019 26.5 3.1 25 294-318 46-70 (90)
41 2htj_A P fimbrial regulatory p 20.7 1.6E+02 0.0056 21.8 5.2 57 46-103 3-62 (81)
42 1p6r_A Penicillinase repressor 20.2 73 0.0025 23.7 3.0 27 203-229 42-68 (82)
43 1sd4_A Penicillinase repressor 20.2 72 0.0025 25.3 3.2 48 44-91 11-61 (126)
No 1
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.2e-33 Score=236.55 Aligned_cols=87 Identities=30% Similarity=0.596 Sum_probs=72.4
Q ss_pred ccccccCCCCChhHHHHHHHHHHhcCceeeccceeecCCCCHHHHHHHHHHHHHcCeEeeecCCCceEEEeccccHHHHH
Q 015452 320 PRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMRE 399 (406)
Q Consensus 320 p~m~~~~p~iP~tV~dQIrlWe~E~~R~~~~~g~L~~~f~s~~~f~~~~~ya~~~g~llW~~~~kr~~~V~~~~h~~v~~ 399 (406)
|+++...|+|||||+|||||||.||||+++++||||++|.|+++|+.+++||+++|+|+|+|+.+|+|||+.+||++|++
T Consensus 19 ~~~~~~~p~lPpTVvDQIrLWE~ErnRl~~~~G~LY~dF~s~~efe~v~~yA~e~gvLlW~d~~kr~~~Vs~egh~~vk~ 98 (108)
T 3dom_A 19 PNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLD 98 (108)
T ss_dssp -------------CCCHHHHHHHHHTTCEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEGGGTEEEEEGGGHHHHHH
T ss_pred cccccCCCCCCCcHHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHHHH
Confidence 45555679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccC
Q 015452 400 FLRGQNK 406 (406)
Q Consensus 400 f~k~~~~ 406 (406)
|||++++
T Consensus 99 f~Kr~~~ 105 (108)
T 3dom_A 99 FAKRKLK 105 (108)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 9999875
No 2
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.9e-31 Score=214.31 Aligned_cols=76 Identities=32% Similarity=0.593 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHhcCceeeccceeecCCCCHHHHHHHHHHHHHcCeEeeecCCCceEEEeccccHHHHHHHhhccC
Q 015452 331 ENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 406 (406)
Q Consensus 331 ~tV~dQIrlWe~E~~R~~~~~g~L~~~f~s~~~f~~~~~ya~~~g~llW~~~~kr~~~V~~~~h~~v~~f~k~~~~ 406 (406)
|||+|||||||.|||||++++||||++|+|+++|+.+++||+++|+|+|+|+.+|+|||+.+||++||+|||++++
T Consensus 2 pTV~DQIrLWe~ErnRl~~~~g~Ly~~F~s~~efe~~~~yA~e~gvLlW~~~~kr~~~V~~~gh~~vk~f~k~~~~ 77 (80)
T 3dgp_A 2 PTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAKRKLK 77 (80)
T ss_dssp ------------CGGGCEEEEEEEEECCSCHHHHHHHHHHHHHTTCEEEEETTTTEEEEEGGGHHHHHHHHTTC--
T ss_pred CchHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999875
No 3
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=82.52 E-value=4.8 Score=31.38 Aligned_cols=81 Identities=14% Similarity=0.073 Sum_probs=62.9
Q ss_pred hhHHHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecCCC-ceeEEeCHHHHHHHH
Q 015452 31 FICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKK-ETTYRLNSTFQSNLQ 109 (406)
Q Consensus 31 ~tclaIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~~~-~~~~~Ln~~F~~~lr 109 (406)
.....+|+.|..-.+.-|+.+|.. ++++..++..-+. -++......++.|.+.+++...+.| ...|.+++..-..+.
T Consensus 11 ~~~~~~~~~l~~~~r~~Il~~L~~-~~~~~~ela~~l~-is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~ 88 (98)
T 3jth_A 11 AKAVVLLKAMANERRLQILCMLHN-QELSVGELCAKLQ-LSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMI 88 (98)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHTTT-SCEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhc-CCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHH
Confidence 345677888877788888888875 8999999999885 4477888999999999999865433 467899998776666
Q ss_pred HHHh
Q 015452 110 KHLI 113 (406)
Q Consensus 110 ~aL~ 113 (406)
..+.
T Consensus 89 ~~l~ 92 (98)
T 3jth_A 89 KLLH 92 (98)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 4
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=82.23 E-value=4.1 Score=32.13 Aligned_cols=79 Identities=16% Similarity=0.234 Sum_probs=60.3
Q ss_pred hHHHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecCC-CceeEEeCHHHHHHHHH
Q 015452 32 ICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKK-KETTYRLNSTFQSNLQK 110 (406)
Q Consensus 32 tclaIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~~-~~~~~~Ln~~F~~~lr~ 110 (406)
....+|+.|..-.+.-|+++|. ++|.+..++..-+. -++......++.|.+.+++...+. ....|.|++..-..+..
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L~-~~~~~~~ela~~l~-is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~ 89 (102)
T 3pqk_A 12 EVANLLKTLSHPVRLMLVCTLV-EGEFSVGELEQQIG-IGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLVN 89 (102)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHH-TCCBCHHHHHHHHT-CCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH-hCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHHHH
Confidence 3456778777777888888884 68899999998874 457788899999999999986433 44779999966555555
Q ss_pred HH
Q 015452 111 HL 112 (406)
Q Consensus 111 aL 112 (406)
+|
T Consensus 90 ~l 91 (102)
T 3pqk_A 90 AL 91 (102)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 5
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=80.18 E-value=6.5 Score=32.04 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=62.6
Q ss_pred hhHHHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecC-CCceeEEeCHHHHHHHH
Q 015452 31 FICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLQ 109 (406)
Q Consensus 31 ~tclaIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr 109 (406)
.....+|+.|..-.+.-|+.+|. ++|++..++..-+. -++......++.|.+.+++...+ +....|.|++.....+.
T Consensus 6 ~~~~~~~~al~~~~R~~Il~~L~-~~~~~~~eLa~~l~-is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~ 83 (118)
T 3f6o_A 6 EQLNGIFQALADPTRRAVLGRLS-RGPATVSELAKPFD-MALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVE 83 (118)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHH-TCCEEHHHHHTTCC-SCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHhC-cCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHH
Confidence 44567889888888888999887 78999999998775 44777888999999999997643 34477999998766665
Q ss_pred HHH
Q 015452 110 KHL 112 (406)
Q Consensus 110 ~aL 112 (406)
..+
T Consensus 84 ~~~ 86 (118)
T 3f6o_A 84 AWL 86 (118)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 6
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=78.42 E-value=14 Score=28.13 Aligned_cols=81 Identities=11% Similarity=0.133 Sum_probs=61.6
Q ss_pred hhHHHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecC-CCceeEEeCHHHHHHHH
Q 015452 31 FICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLQ 109 (406)
Q Consensus 31 ~tclaIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr 109 (406)
.....+|+.|..-.+.-|+..|...++++..++..=+.- ++......++.|.+.+++...+ +....|.|++.-.+.+.
T Consensus 12 ~~~~~~~~~l~~~~~~~il~~l~~~~~~s~~ela~~l~i-s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~ 90 (99)
T 3cuo_A 12 EQAAALLKAMSHPKRLLILCMLSGSPGTSAGELTRITGL-SASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAII 90 (99)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHTTCCSEEHHHHHHHHCC-CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHHHhCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHH
Confidence 344567777777777888899887779999999887754 4778889999999999997643 34467889988766666
Q ss_pred HHH
Q 015452 110 KHL 112 (406)
Q Consensus 110 ~aL 112 (406)
..+
T Consensus 91 ~~l 93 (99)
T 3cuo_A 91 ATL 93 (99)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 7
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=73.05 E-value=13 Score=29.47 Aligned_cols=79 Identities=10% Similarity=0.167 Sum_probs=59.5
Q ss_pred hHHHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecC-CCceeEEeCHHHHHHHHH
Q 015452 32 ICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLQK 110 (406)
Q Consensus 32 tclaIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr~ 110 (406)
....+|+.|..-.+.-|+.+|. +++.+..++..-+.- ++......++.|.+.+++...+ +....|.+++..-..+-.
T Consensus 15 ~~~~~~~~l~~~~r~~IL~~L~-~~~~~~~ela~~l~i-s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~ 92 (106)
T 1r1u_A 15 RVTEIFKALGDYNRIRIMELLS-VSEASVGHISHQLNL-SQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLK 92 (106)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHH-HCCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHH
Confidence 3456888888777877888887 788999999988754 4777888999999999997643 334678899875554444
Q ss_pred HH
Q 015452 111 HL 112 (406)
Q Consensus 111 aL 112 (406)
.+
T Consensus 93 ~l 94 (106)
T 1r1u_A 93 QA 94 (106)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 8
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=69.83 E-value=21 Score=28.09 Aligned_cols=77 Identities=12% Similarity=0.055 Sum_probs=58.2
Q ss_pred hhHHHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecC-CCceeEEeCHHHHHHHH
Q 015452 31 FICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLQ 109 (406)
Q Consensus 31 ~tclaIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr 109 (406)
.....+|+.|..-.+.-|+..| .++|++..++..-+.- ++......++.|.+.+++...+ +....|.|++.-...+.
T Consensus 9 ~~~~~~~~~l~~~~r~~IL~~L-~~~~~~~~ela~~l~i-s~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~ 86 (114)
T 2oqg_A 9 AELASVFAALSDETRWEILTEL-GRADQSASSLATRLPV-SRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTA 86 (114)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-HHSCBCHHHHHHHSSS-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHH-HcCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHH
Confidence 3456778888877777888888 7789999999987764 4777889999999999997532 33466889887554433
No 9
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=67.26 E-value=12 Score=29.97 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=58.7
Q ss_pred HHHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecC-CCceeEEeCHHHHHHHHHH
Q 015452 33 CEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLQKH 111 (406)
Q Consensus 33 claIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr~a 111 (406)
...+|+.|..-.+.-|+.+|. +++++..++..-+.- ++......++.|.+.+++...+ +....|.|++.-...+..+
T Consensus 15 ~~~~~~al~~~~r~~IL~~L~-~~~~s~~eLa~~lgi-s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~ 92 (108)
T 2kko_A 15 VARVGKALANGRRLQILDLLA-QGERAVEAIATATGM-NLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARLFAL 92 (108)
T ss_dssp HHHHHHHHTTSTTHHHHHHHT-TCCEEHHHHHHHHTC-CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH-cCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHH
Confidence 456777666666666777776 688999999988754 4778888999999999997643 3346788998876666666
Q ss_pred Hh
Q 015452 112 LI 113 (406)
Q Consensus 112 L~ 113 (406)
|.
T Consensus 93 l~ 94 (108)
T 2kko_A 93 VQ 94 (108)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 10
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=65.02 E-value=17 Score=31.26 Aligned_cols=78 Identities=14% Similarity=0.159 Sum_probs=61.6
Q ss_pred HHHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecC-CCceeEEeCHHHHHHHHHH
Q 015452 33 CEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLQKH 111 (406)
Q Consensus 33 claIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr~a 111 (406)
+..+|+.|..-.+.-|+.+|. ++|.+..+|..-+.- ++......|+.|.+.+++...+ +....|.|++.-.+.+...
T Consensus 48 ~~~~l~aL~~p~R~~IL~~L~-~~~~t~~eLa~~lgl-s~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~ 125 (151)
T 3f6v_A 48 VLDQLEVAAEPTRRRLVQLLT-SGEQTVNNLAAHFPA-SRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRAL 125 (151)
T ss_dssp CCCHHHHHTSHHHHHHHHHGG-GCCEEHHHHHTTSSS-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHH
Confidence 336788888888888999997 789999999987764 4788889999999999998643 3446789999876666554
Q ss_pred H
Q 015452 112 L 112 (406)
Q Consensus 112 L 112 (406)
+
T Consensus 126 l 126 (151)
T 3f6v_A 126 F 126 (151)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=59.34 E-value=23 Score=28.75 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=54.7
Q ss_pred HHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecC-CCceeEEeCHHHHHHHHHHHh
Q 015452 35 AILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLQKHLI 113 (406)
Q Consensus 35 aIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr~aL~ 113 (406)
.+|+.|..-.+.-|+.+|. +++.+..++..-+. -++......++.|.+.+++...+ +....|.|++.--..+...+.
T Consensus 13 ~~~~aL~~~~r~~IL~~L~-~~~~~~~eLa~~lg-is~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~~~~~l~ 90 (118)
T 2jsc_A 13 RLGRALADPTRCRILVALL-DGVCYPGQLAAHLG-LTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSHLARALGELV 90 (118)
T ss_dssp THHHHHSSHHHHHHHHHHH-TTCCSTTTHHHHHS-SCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHHHHHHHHHCC
T ss_pred HHHHHhCCHHHHHHHHHHH-cCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHHHHHHHHHHH
Confidence 3555555555666777776 67888899988775 45788889999999999997643 344678999875444444444
Q ss_pred c
Q 015452 114 N 114 (406)
Q Consensus 114 g 114 (406)
.
T Consensus 91 ~ 91 (118)
T 2jsc_A 91 Q 91 (118)
T ss_dssp S
T ss_pred H
Confidence 3
No 12
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=59.01 E-value=17 Score=28.14 Aligned_cols=64 Identities=6% Similarity=0.031 Sum_probs=51.3
Q ss_pred HHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecCCCceeEEeCHH
Q 015452 34 EAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNST 103 (406)
Q Consensus 34 laIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~~~~~~~~Ln~~ 103 (406)
..+|+.|..-.+.-|+.+| +++++..++..-+. -++......++.|.+.+++.... | .|.|++.
T Consensus 22 ~~~~~~l~~~~r~~Il~~L--~~~~~~~eLa~~l~-is~~tv~~~L~~L~~~Glv~~~~-g--~y~l~~~ 85 (96)
T 1y0u_A 22 KRYNYAVTNPVRRKILRML--DKGRSEEEIMQTLS-LSKKQLDYHLKVLEAGFCIERVG-E--RWVVTDA 85 (96)
T ss_dssp HHHHHHHSCHHHHHHHHHH--HTTCCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEET-T--EEEECTT
T ss_pred HHHHHHhCCHHHHHHHHHH--cCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEEEEC-C--EEEECCC
Confidence 4577777666777788888 78899999998876 44777889999999999998755 3 8889875
No 13
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=54.71 E-value=25 Score=28.73 Aligned_cols=80 Identities=11% Similarity=0.078 Sum_probs=58.6
Q ss_pred hHHHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecCC-CceeEEeCHHHHHHHHH
Q 015452 32 ICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKK-KETTYRLNSTFQSNLQK 110 (406)
Q Consensus 32 tclaIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~~-~~~~~~Ln~~F~~~lr~ 110 (406)
....+|+.|..-.+.-|+.+|..+++.+..++..-+.- ++......++.|.+.+++...+. ....|.|++.--..+-.
T Consensus 31 ~~~~~~~al~~~~rl~IL~~L~~~~~~s~~eLa~~l~i-s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~ 109 (122)
T 1u2w_A 31 GVSQILKAIADENRAKITYALCQDEELCVCDIANILGV-TIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMM 109 (122)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHSSCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHH
Confidence 45677888877777778888876788999999987754 47788888999999999976433 33678898875444444
Q ss_pred HH
Q 015452 111 HL 112 (406)
Q Consensus 111 aL 112 (406)
.+
T Consensus 110 ~l 111 (122)
T 1u2w_A 110 IA 111 (122)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 14
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=53.48 E-value=28 Score=27.35 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=59.5
Q ss_pred hhhHHHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeec-CCCceeEEeCHHHHHHH
Q 015452 30 PFICEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEE-KKKETTYRLNSTFQSNL 108 (406)
Q Consensus 30 p~tclaIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~-~~~~~~~~Ln~~F~~~l 108 (406)
......+|+.|.+-.+.-|++.|..++|.+..++..-+.- ++......++.|.+- ++... .|....|.|++.--+.+
T Consensus 14 ~~~~~~~~~aL~~~~Rl~IL~~l~~~~~~~~~ela~~l~i-s~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~ 91 (99)
T 2zkz_A 14 LEDDAELLKTMAHPMRLKIVNELYKHKALNVTQIIQILKL-PQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGI 91 (99)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHSCEEHHHHHHHHTC-CHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHH
Confidence 3456678887777677777766666788999999887754 367788889999999 88653 33446789998877666
Q ss_pred HHHH
Q 015452 109 QKHL 112 (406)
Q Consensus 109 r~aL 112 (406)
...|
T Consensus 92 ~~~l 95 (99)
T 2zkz_A 92 IKLL 95 (99)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 15
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=50.16 E-value=13 Score=27.84 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=19.7
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCc
Q 015452 297 LYNAFENGITAEQIISFLQQNAHP 320 (406)
Q Consensus 297 v~~A~~~GITA~QIi~fL~~hahp 320 (406)
|++|-+.|+|.++|..||..+-.+
T Consensus 19 I~~Ak~lGlsleEIrefL~l~~~~ 42 (57)
T 1b0n_B 19 MVEAKEANISPEEIRKYLLLNKKS 42 (57)
T ss_dssp HHHHHHTTCCHHHHHHHHHHC---
T ss_pred HHHHHHcCCCHHHHHHHHHHhccC
Confidence 689999999999999999987543
No 16
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=49.37 E-value=12 Score=30.44 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHhcCChhHHHHHHHHhcCCCCCC--hhHHHhhcCCcchhHHHHHHHHHHcCceeeecCCCceeEEeCHHH
Q 015452 36 ILRSLPPLAKKYVFQMLYIDGAIP--AKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTF 104 (406)
Q Consensus 36 IfR~LP~lak~~VmrlL~~~~~vp--~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~~~~~~~~Ln~~F 104 (406)
+|..|..--+-.|++.|. ++|.. ..++..-+..-+.......|+.|.+-+++.........|.|++.=
T Consensus 20 ~l~~l~~~wrl~IL~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G 89 (111)
T 3df8_A 20 VLHLLGKKYTMLIISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALTEKG 89 (111)
T ss_dssp THHHHHSTTHHHHHHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHH
T ss_pred HHHHHcCccHHHHHHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeecCcEEEEECccH
Confidence 334443334666777777 77877 899999885566888999999999999997643245779999863
No 17
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=48.85 E-value=41 Score=26.67 Aligned_cols=67 Identities=10% Similarity=0.059 Sum_probs=50.1
Q ss_pred HHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeec--C--CCceeEEeCHH
Q 015452 36 ILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEE--K--KKETTYRLNST 103 (406)
Q Consensus 36 IfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~--~--~~~~~~~Ln~~ 103 (406)
+|..+..--+..|+..|. +++.+..++..-+..-+.......+++|.+.+++... + +....|.|++.
T Consensus 7 ~l~~l~~~~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~ 77 (107)
T 2hzt_A 7 TLEVIGGKWKXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEY 77 (107)
T ss_dssp HHHHHCSTTHHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTT
T ss_pred HHHHHcCccHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECcc
Confidence 445555555666777787 7899999999988556688899999999999999752 1 12356888875
No 18
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=48.79 E-value=64 Score=26.39 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=55.9
Q ss_pred HHHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecC-CCceeEEeCHHHHHHHH
Q 015452 33 CEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLQ 109 (406)
Q Consensus 33 claIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr 109 (406)
...+|+.|-.-.+.-|+.+|. +++.+..++..-+.- ++......++.|.+.+++...+ +....|.+++.--..+-
T Consensus 36 ~~~~~kaL~~~~rl~IL~~L~-~~~~s~~ela~~lgi-s~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~l~~~~ 111 (122)
T 1r1t_A 36 LAEFFAVLADPNRLRLLSLLA-RSELCVGDLAQAIGV-SESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALY 111 (122)
T ss_dssp HHHHHHHHCCHHHHHHHHHHT-TCCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH-cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHH
Confidence 456788777777777888886 578999999988754 4778888999999999997643 33466888876444333
No 19
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=44.18 E-value=47 Score=26.22 Aligned_cols=69 Identities=7% Similarity=-0.022 Sum_probs=52.6
Q ss_pred HHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeec--C--CCceeEEeCHH
Q 015452 34 EAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEE--K--KKETTYRLNST 103 (406)
Q Consensus 34 laIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~--~--~~~~~~~Ln~~ 103 (406)
...|..+..--+..|+..|. +++....++..-+..-+.......++.|.+.+++... + .....|.|++.
T Consensus 16 ~~~l~~l~~~~~~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~ 88 (107)
T 2fsw_A 16 RKSMQIFAGKWTLLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPL 88 (107)
T ss_dssp HHHHHHHTSSSHHHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHH
T ss_pred HHHHHHHcCccHHHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECcc
Confidence 45566666666666888887 7899999999987645688899999999999999752 1 12366889986
No 20
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=43.38 E-value=47 Score=25.05 Aligned_cols=72 Identities=10% Similarity=0.001 Sum_probs=50.9
Q ss_pred cCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeec----CCCceeEEeCHHHHHHHHHH
Q 015452 39 SLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEE----KKKETTYRLNSTFQSNLQKH 111 (406)
Q Consensus 39 ~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~----~~~~~~~~Ln~~F~~~lr~a 111 (406)
.|..-.+.-|+..|..+++++.+++..-+.- ++......++.|.+-+++... .+....|.|++.-++-+...
T Consensus 12 ~l~~~~~~~iL~~L~~~~~~~~~ela~~l~i-s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~ 87 (100)
T 1ub9_A 12 ILGNPVRLGIMIFLLPRRKAPFSQIQKVLDL-TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRF 87 (100)
T ss_dssp HHHSHHHHHHHHHHHHHSEEEHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHhcCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHH
Confidence 3334445667777776778999999987754 467788889999999999742 22336688998866544433
No 21
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=42.96 E-value=78 Score=25.07 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=56.6
Q ss_pred HHHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecC-CCceeEEeC-HHHHHHHHH
Q 015452 33 CEAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEK-KKETTYRLN-STFQSNLQK 110 (406)
Q Consensus 33 claIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln-~~F~~~lr~ 110 (406)
...+|+.|....+.-|+..|.- ++.+..++..-+.- ++......|+.|.+.+++...+ +....|.++ ..+..-++.
T Consensus 22 ~~~~~~~l~~~~~~~il~~L~~-~~~s~~ela~~l~i-s~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~~~~~~~~~~ 99 (119)
T 2lkp_A 22 VASTLQALATPSRLMILTQLRN-GPLPVTDLAEAIGM-EQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQLLDE 99 (119)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHH-CCCCHHHHHHHHSS-CHHHHHHHHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH-CCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEchHHHHHHHHH
Confidence 3456777777777778888875 68888999887754 4788888999999999986532 234668888 666665554
Q ss_pred HH
Q 015452 111 HL 112 (406)
Q Consensus 111 aL 112 (406)
++
T Consensus 100 ~~ 101 (119)
T 2lkp_A 100 AI 101 (119)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 22
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=37.13 E-value=23 Score=26.54 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCCCCChhHHHhhcCC---cchhHHHHHHHHHHcCceeeec
Q 015452 44 AKKYVFQMLYIDGAIPAKTMEEWVLP---DGFTKHKVAIDRLVQLRLFSEE 91 (406)
Q Consensus 44 ak~~VmrlL~~~~~vp~~~l~~Wv~~---~~~~~~~~al~~L~~L~I~~~~ 91 (406)
++..||..||..+|++..++...+.. -+.......+++|.+-+++...
T Consensus 10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 45679999999899999999988753 2567889999999999999764
No 23
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=35.89 E-value=39 Score=31.50 Aligned_cols=77 Identities=10% Similarity=0.116 Sum_probs=54.9
Q ss_pred CChhhHHHHHhcC-----ChhHHHH--HHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeec----CCCce
Q 015452 28 ENPFICEAILRSL-----PPLAKKY--VFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEE----KKKET 96 (406)
Q Consensus 28 ~~p~tclaIfR~L-----P~lak~~--VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~----~~~~~ 96 (406)
..|...-.|=|.+ +.+.+-- +++++...+||+.++++.--.-+. ...++.|..-++|.+. ..|..
T Consensus 78 T~~e~~~~v~~~~~~~~~~~Ls~aaLEtLaiIAy~QPITR~eI~~irGv~~----~~~v~~Lle~gLI~e~Gr~~~~Gp~ 153 (219)
T 2z99_A 78 TRARFAPYVEKLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNV----DAVMRTLLARGLITEVGTDADTGAV 153 (219)
T ss_dssp ECGGGHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCC----HHHHHHHHHTTSEEEEEECTTTCCE
T ss_pred EcHHHHHHHHHHhcccccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCCH----HHHHHHHHHCCCEEEccccCCCCCe
Confidence 3354444444433 3455555 888888899999999998665544 5789999999999762 11467
Q ss_pred eEEeCHHHHHHH
Q 015452 97 TYRLNSTFQSNL 108 (406)
Q Consensus 97 ~~~Ln~~F~~~l 108 (406)
.|.+++.|..-|
T Consensus 154 ly~tT~~Fl~~f 165 (219)
T 2z99_A 154 TFATTELFLERL 165 (219)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEECHHHHHHh
Confidence 899999997754
No 24
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=34.64 E-value=22 Score=29.43 Aligned_cols=49 Identities=8% Similarity=0.224 Sum_probs=35.3
Q ss_pred eCHHHHH-HH---HHcCCCHHHHHHHHhhcCCccccccCCCCChhHHHHHHHHHHhcCc
Q 015452 292 ITKESLY-NA---FENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNR 346 (406)
Q Consensus 292 iTreSv~-~A---~~~GITA~QIi~fL~~hahp~m~~~~p~iP~tV~dQIrlWe~E~~R 346 (406)
++|...- -| ...|.+.++.+.++++. +|.+ ...+....|++.||.+++|
T Consensus 92 ~sRS~~~v~ayLm~~~~~~~~~A~~~v~~~-Rp~~-----~pn~~f~~qL~~~e~~~~~ 144 (144)
T 3s4e_A 92 VSRAAAIVIGFLMNSEQTSFTSAFSLVKNA-RPSI-----CPNSGFMEQLRTYQEGKES 144 (144)
T ss_dssp SSHHHHHHHHHHHHHHCCCHHHHHHHHHHH-STTC-----CCCHHHHHHHHHTTHHHHC
T ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCCc-----CCCHHHHHHHHHHHHhccC
Confidence 6776443 23 25899999999999974 4532 2346899999999987653
No 25
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=33.75 E-value=1.1e+02 Score=24.28 Aligned_cols=71 Identities=11% Similarity=0.029 Sum_probs=54.0
Q ss_pred HHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeec--C--CCceeEEeCHHHH
Q 015452 34 EAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEE--K--KKETTYRLNSTFQ 105 (406)
Q Consensus 34 laIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~--~--~~~~~~~Ln~~F~ 105 (406)
..+|..++.--+..|+..|. +++++..+|..-+..-++......+++|.+-+++... + +....|.|++.=+
T Consensus 13 ~~~l~~l~~~~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~ 87 (112)
T 1z7u_A 13 NLALSTINGKWKLSLMDELF-QGTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGY 87 (112)
T ss_dssp HHHHHTTCSTTHHHHHHHHH-HSCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHH
T ss_pred HHHHHHHcCccHHHHHHHHH-hCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHH
Confidence 35667777666777888887 5899999999988455688899999999999999752 1 2335688998643
No 26
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=33.68 E-value=25 Score=31.22 Aligned_cols=78 Identities=14% Similarity=0.225 Sum_probs=54.0
Q ss_pred hCChhhHHHHHhcCC-----hhHHHH--HHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeee-----cCCC
Q 015452 27 YENPFICEAILRSLP-----PLAKKY--VFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSE-----EKKK 94 (406)
Q Consensus 27 Y~~p~tclaIfR~LP-----~lak~~--VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~-----~~~~ 94 (406)
+..|.-.-.|=|.++ .|.+-- ++.++...+||+.++++.--.-+ -...++.|..-++|.+ .+|.
T Consensus 71 ~t~~~~~~~v~~~~~~~~~~~LS~aaLEtLaiIay~qPiTR~eI~~irGv~----~~~~v~~L~e~glI~e~g~~~~~GR 146 (162)
T 1t6s_A 71 LTEPEFADLVRQLLAPVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGAS----PDYSIDRLLARGLIEVRGRADSPGR 146 (162)
T ss_dssp EECGGGHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCC----CCSHHHHHHHTTSEEEEEECSSTTC
T ss_pred EEcHHHHHHHHHHhcccccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCC----HHHHHHHHHHCCCEEEccccCCCCC
Confidence 334555555555443 244554 78888888999999999865544 3457888999999976 2233
Q ss_pred ceeEEeCHHHHHHH
Q 015452 95 ETTYRLNSTFQSNL 108 (406)
Q Consensus 95 ~~~~~Ln~~F~~~l 108 (406)
+..|..++.|-+-|
T Consensus 147 p~ly~tT~~fL~~F 160 (162)
T 1t6s_A 147 PLQYGTTEVFLDLF 160 (162)
T ss_dssp CEEEEECHHHHHHT
T ss_pred CeEEEECHHHHHhc
Confidence 56799999997754
No 27
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=31.69 E-value=83 Score=24.55 Aligned_cols=59 Identities=7% Similarity=0.022 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecCCCceeEEeCHH
Q 015452 45 KKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNST 103 (406)
Q Consensus 45 k~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~~~~~~~~Ln~~ 103 (406)
+.-|+.+|...+|.+..++..=+.-+..+.....|..|.+-+.+.....|...|.|++.
T Consensus 13 ~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP~w~LT~~ 71 (79)
T 1xmk_A 13 KEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWHLTDK 71 (79)
T ss_dssp HHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEEECHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCCCeEeCHh
Confidence 45577889999999999999988877665889999999999999754335568999875
No 28
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=31.23 E-value=53 Score=30.48 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=64.3
Q ss_pred cceEEEeeCceEEeecCChhHHHHHHHHHhhHhcCCceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHhhcCC
Q 015452 250 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG---AITKESLYNAFENGI-------TAEQIISFLQQNAH 319 (406)
Q Consensus 250 ~g~iivETNfrvYAYt~s~l~iaiL~lF~~l~~r~pnmvvg---~iTreSv~~A~~~GI-------TA~QIi~fL~~hah 319 (406)
.|.=++|..|| +|-.... +..+..++|+++|| ++|.+.+++|.+.|- +-.+++.+-+.+--
T Consensus 37 gGi~~iEvt~~------t~~a~~~---I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~~evi~~~~~~~v 107 (217)
T 3lab_A 37 GGVHLLEVTLR------TEAGLAA---ISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEKAKQVKL 107 (217)
T ss_dssp TTCCEEEEETT------STTHHHH---HHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCC------CccHHHH---HHHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEEeCCCcHHHHHHHHHcCC
Confidence 46678888776 4444433 34556778999999 899999999999983 34578888776543
Q ss_pred ccccccCCCCCh--hHHHHHHHHHHhcCceeeccc
Q 015452 320 PRVADRIPSVPE--NVCDQIRLWESDLNRVEMTPA 352 (406)
Q Consensus 320 p~m~~~~p~iP~--tV~dQIrlWe~E~~R~~~~~g 352 (406)
- =.-+.|.+|- |..+=.+-|+.--+-++++++
T Consensus 108 ~-~~~~~~~~PG~~TptE~~~A~~~Gad~vK~FPa 141 (217)
T 3lab_A 108 D-GQWQGVFLPGVATASEVMIAAQAGITQLKCFPA 141 (217)
T ss_dssp H-CSCCCEEEEEECSHHHHHHHHHTTCCEEEETTT
T ss_pred C-ccCCCeEeCCCCCHHHHHHHHHcCCCEEEECcc
Confidence 0 0001135554 777778889988888888764
No 29
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=31.12 E-value=86 Score=26.04 Aligned_cols=72 Identities=11% Similarity=0.053 Sum_probs=53.9
Q ss_pred HHHHhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeec--C--CCceeEEeCHHHHH
Q 015452 34 EAILRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEE--K--KKETTYRLNSTFQS 106 (406)
Q Consensus 34 laIfR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~--~--~~~~~~~Ln~~F~~ 106 (406)
..+|..+..--+..|+..|. +++....+|..-+..-+.......|+.|.+-+++... + +....|.|++.=+.
T Consensus 26 ~~~l~~l~~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~ 101 (131)
T 1yyv_A 26 REVLKHVTSRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQ 101 (131)
T ss_dssp HHHHHHHHSHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHH
Confidence 45566666555666888887 7899999999988545688899999999999999752 1 12367899986433
No 30
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=29.71 E-value=1.5e+02 Score=27.77 Aligned_cols=68 Identities=19% Similarity=0.210 Sum_probs=54.1
Q ss_pred ChhHHHHHHHHhcC--CCCCChhHHHhhcCCcc--hhHHHHHHHHHHcCceeeecCCCceeEEeCHHHHHHHHHH
Q 015452 41 PPLAKKYVFQMLYI--DGAIPAKTMEEWVLPDG--FTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKH 111 (406)
Q Consensus 41 P~lak~~VmrlL~~--~~~vp~~~l~~Wv~~~~--~~~~~~al~~L~~L~I~~~~~~~~~~~~Ln~~F~~~lr~a 111 (406)
|.-|+..|+.+|+- ..+|+...|-.++.+=+ ......|+.+|.+=+.++..+.| |.|++.=++.++.+
T Consensus 2 ~~~arSlIlsll~g~~g~~i~~~~Li~l~~~~Gi~e~avRtAlsRL~~~G~L~~~~~G---Y~LT~~~~~~~~~~ 73 (247)
T 3kfw_X 2 SLTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG---YRLSDRLLARQRRQ 73 (247)
T ss_dssp CCCHHHHHHHHHTTTTTSCBCHHHHHHHHTTTTCCHHHHHHHHHHHHHTTSEEEETTE---EEECHHHHHHHHHH
T ss_pred CCCCceeeEeeecCCCCCcccHHHHHHHHHHcCCChHHHHHHHHHHHHcCCeeccCCc---eeeCHHHHHHHHHH
Confidence 66789999999875 45799999999998744 56678999999999999775433 99999876666544
No 31
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=27.58 E-value=53 Score=34.56 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHc-----CceeeecCCCceeEEeCHHHHHHH
Q 015452 44 AKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQ-----LRLFSEEKKKETTYRLNSTFQSNL 108 (406)
Q Consensus 44 ak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~-----L~I~~~~~~~~~~~~Ln~~F~~~l 108 (406)
-.+.|+..|..+..++.+++..=+. -+......+|+.|.+ ..++... | ..|.|++....-+
T Consensus 431 ~~~~iL~~l~~~~~it~~~la~~l~-~s~~~~~~~L~~L~~~~~~~~glie~~--g-~~y~L~~~~~~~~ 496 (583)
T 3lmm_A 431 RIAIVLYLLFQRPFITIDVVARGLQ-SGKEAARNALEAARQTTVAGAPLIIAH--D-GVWLLGNACREIL 496 (583)
T ss_dssp HHHHHHHHHHHSSSBCHHHHHHHHT-SCHHHHHHHHHHHHTCEETTEESEEEE--T-TEEEECHHHHHHH
T ss_pred hHHHHHHHHHHCCCcCHHHHHHHhC-cCHHHHHHHHHHHHhhhccccceEEEe--C-CEEEECHHHHHHh
Confidence 4567888888899999999998776 447788889999998 7788664 2 4799999976644
No 32
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=26.55 E-value=37 Score=27.33 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=42.7
Q ss_pred CChhHHHHHHHHhcCCCCCChhHHHhhcCCc---chhHHHHHHHHHHcCceeeecC
Q 015452 40 LPPLAKKYVFQMLYIDGAIPAKTMEEWVLPD---GFTKHKVAIDRLVQLRLFSEEK 92 (406)
Q Consensus 40 LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~---~~~~~~~al~~L~~L~I~~~~~ 92 (406)
|.+ ++..||..||..++++..+|...+..+ +.......|++|.+-+++...+
T Consensus 33 LT~-~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 33 VSN-AELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CCC-SCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred CCH-HHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 443 456799999988899999999988754 4678899999999999997643
No 33
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=26.02 E-value=88 Score=27.16 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=23.4
Q ss_pred CHHHHHHHHHhhhcCeeeEeeCCCccee
Q 015452 202 SEIQRSMIKDFADLGLVKLQQGRKESWF 229 (406)
Q Consensus 202 t~tq~~~L~~L~~lGLVy~~~~~~~~fy 229 (406)
.-||-++=+||+++|+|..+..++...|
T Consensus 35 ~VtqaTisRDL~eL~~vKv~~~~g~~~Y 62 (149)
T 1b4a_A 35 NVTQATVSRDIKEMQLVKVPMANGRYKY 62 (149)
T ss_dssp CCCHHHHHHHHHHTTCEEEECSSSCEEE
T ss_pred CcCHHHHHHHHHHcCCeEEECCCCCEEE
Confidence 3467888899999999999987766767
No 34
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=25.95 E-value=63 Score=27.00 Aligned_cols=111 Identities=12% Similarity=0.032 Sum_probs=63.7
Q ss_pred EEEeeCceEEeecC-ChhHHHHHHHHH-hhHhcCCceEEEEeCHHHHHHHHHcCC-CHHHHHHHHhhcCCccccccCCCC
Q 015452 253 VVVETNFRMYAYST-SKLHCEILRLFS-KIEYQLPNLIVGAITKESLYNAFENGI-TAEQIISFLQQNAHPRVADRIPSV 329 (406)
Q Consensus 253 iivETNfrvYAYt~-s~l~iaiL~lF~-~l~~r~pnmvvg~iTreSv~~A~~~GI-TA~QIi~fL~~hahp~m~~~~p~i 329 (406)
++|.||.=||.+.. .+.+-....++. .+...-..+++..++-..+...+.+.. .+.+.+..|... +. ..++
T Consensus 3 i~lDTnvli~~l~~~~~~~~~a~~~l~~~~~~~~~~~~is~~vl~E~~~~l~~~~~~~~~~l~~l~~~--~~----~~v~ 76 (156)
T 1w8i_A 3 ALIDTGIFFGFYSLKDVHHMDSVAIVVHAVEGKWGRLFVTNHILDETLTLLKYKKLPADKFLEGFVES--GV----LNII 76 (156)
T ss_dssp EEECHHHHHHHHCTTSTTHHHHHHHHHHHHTTTTSEEEEEHHHHHHHHHHHHHTTCCHHHHHHHHTTT--SS----SEEE
T ss_pred EEEEhHHHHHHHcCCcHhHHHHHHHHHHHHhcCCCcEEecHHHHHHHHHHHHhhHHHHHHHHHHHhhC--CC----eEEE
Confidence 78999999999886 566666667776 554323457777777777766665421 566666665321 11 1245
Q ss_pred ChhHHHHHHHHHHhc---Cc--eeeccceeecCCCCHHHHHHHHHHHHHcCeEeeecC
Q 015452 330 PENVCDQIRLWESDL---NR--VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDS 382 (406)
Q Consensus 330 P~tV~dQIrlWe~E~---~R--~~~~~g~L~~~f~s~~~f~~~~~ya~~~g~llW~~~ 382 (406)
|.+-.+-.+-|+.-. ++ +.+.|+ .++..|+..|+.++..|
T Consensus 77 ~~~~~~~~~A~~l~~~~~~~~~l~~~Da-------------li~A~A~~~g~~l~T~D 121 (156)
T 1w8i_A 77 YTDDEVERKALEVFKARVYEKGFSYTDA-------------ISEVVAEELKLKLISYD 121 (156)
T ss_dssp CCCHHHHHHHHHHHHHTTTSTTCCHHHH-------------HHHHHHHHHTCEEECSC
T ss_pred eCCHHHHHHHHHHHHHHhccCCCCHhHH-------------HHHHHHHHcCCEEEEeC
Confidence 544333333333322 11 222221 22567788888888766
No 35
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=25.52 E-value=2.1e+02 Score=21.33 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=51.6
Q ss_pred HhcCChhHHHHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeeecCC-----C--ceeEEeCHHHHHHHH
Q 015452 37 LRSLPPLAKKYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKK-----K--ETTYRLNSTFQSNLQ 109 (406)
Q Consensus 37 fR~LP~lak~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~~~~-----~--~~~~~Ln~~F~~~lr 109 (406)
...|.+-....+..++..+++++..++..-+.- ++......++.|.+.+++...++ | ...|.+++.+.+.++
T Consensus 16 ~~~l~~~~~~~l~~l~~~~~~~t~~ela~~l~i-s~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~~~~~~~~ 94 (109)
T 2d1h_A 16 CYKITDTDVAVLLKMVEIEKPITSEELADIFKL-SKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIR 94 (109)
T ss_dssp HHTCCHHHHHHHHHHHHHCSCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHcCCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecCHHHHHHHH
Confidence 345666655666666654788999999987764 47778889999999999975321 1 235778886666555
Q ss_pred HHH
Q 015452 110 KHL 112 (406)
Q Consensus 110 ~aL 112 (406)
..+
T Consensus 95 ~~~ 97 (109)
T 2d1h_A 95 NDL 97 (109)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 36
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}
Probab=25.46 E-value=1.2e+02 Score=24.82 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=34.2
Q ss_pred eCHHHHHHH----HHcCCCHHHHHHHHhhcCCccccccCCCCChhHHHHHHHHHHhc
Q 015452 292 ITKESLYNA----FENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDL 344 (406)
Q Consensus 292 iTreSv~~A----~~~GITA~QIi~fL~~hahp~m~~~~p~iP~tV~dQIrlWe~E~ 344 (406)
++|...--| ...|.+.++++.++++. +|.+ ..-+....|++.||.+.
T Consensus 94 ~~RSg~~~~ayl~~~~~~~~~~a~~~v~~~-R~~~-----~pn~~f~~qL~~~e~~l 144 (149)
T 1zzw_A 94 VSRSATIVIAYLMKHTRMTMTDAYKFVKGK-RPII-----SPNLNFMGQLLEFEEDL 144 (149)
T ss_dssp SSHHHHHHHHHHHHHSCCCHHHHHHHHHHH-CTTC-----CCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCcc-----CCCHHHHHHHHHHHHHH
Confidence 588876433 24799999999999876 4432 22347899999999874
No 37
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.10 E-value=1.1e+02 Score=22.68 Aligned_cols=58 Identities=7% Similarity=0.204 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCC--CCCChhHHHhhcC----CcchhHHHHHHHHHHcCceeeecC--CCceeEEeC
Q 015452 44 AKKYVFQMLYID--GAIPAKTMEEWVL----PDGFTKHKVAIDRLVQLRLFSEEK--KKETTYRLN 101 (406)
Q Consensus 44 ak~~VmrlL~~~--~~vp~~~l~~Wv~----~~~~~~~~~al~~L~~L~I~~~~~--~~~~~~~Ln 101 (406)
.+.-|+.+|... .+++..++..-++ .-+....-..|+.|.+.+++.... ++...|.++
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~~~ 83 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELT 83 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEEC
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEeecC
Confidence 456688888754 6899999998884 345788889999999999997632 344556653
No 38
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=24.66 E-value=52 Score=26.26 Aligned_cols=25 Identities=12% Similarity=0.505 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcC
Q 015452 294 KESLYNAFENGITAEQIISFLQQNA 318 (406)
Q Consensus 294 reSv~~A~~~GITA~QIi~fL~~ha 318 (406)
|.-|++-+..|=|-+||++|+...-
T Consensus 49 R~~V~~~l~~G~sd~eI~~~~v~RY 73 (84)
T 2hl7_A 49 RKQIYGQLQQGKSDGEIVDYMVARY 73 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 6789999999999999999998653
No 39
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=24.58 E-value=61 Score=26.03 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=26.3
Q ss_pred CHHHHHHHHHhhhcCeeeEeeCCCcceecchhhhhhh
Q 015452 202 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL 238 (406)
Q Consensus 202 t~tq~~~L~~L~~lGLVy~~~~~~~~fy~pT~La~~L 238 (406)
..+--..|+.|.+.|||..+.. ...+|..|+....+
T Consensus 57 ~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~G~~l 92 (111)
T 3df8_A 57 STILSRRIKDLIDSGLVERRSG-QITTYALTEKGMNV 92 (111)
T ss_dssp HHHHHHHHHHHHHTTSEEEEES-SSEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEeec-CcEEEEECccHHHH
Confidence 3555778999999999987765 56667678765433
No 40
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=23.46 E-value=56 Score=26.48 Aligned_cols=25 Identities=12% Similarity=0.513 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcC
Q 015452 294 KESLYNAFENGITAEQIISFLQQNA 318 (406)
Q Consensus 294 reSv~~A~~~GITA~QIi~fL~~ha 318 (406)
|.-|++-+..|=|-+||++|+...-
T Consensus 46 R~~Vre~l~~G~Sd~eI~~~mv~RY 70 (90)
T 2kw0_A 46 RQKVYELMQEGKSKKEIVDYMVARY 70 (90)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 6789999999999999999998654
No 41
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=20.69 E-value=1.6e+02 Score=21.77 Aligned_cols=57 Identities=9% Similarity=0.039 Sum_probs=41.9
Q ss_pred HHHHHHhcCCCCCChhHHHhhcCCcchhHHHHHHHHHHcCceeee--cCC-CceeEEeCHH
Q 015452 46 KYVFQMLYIDGAIPAKTMEEWVLPDGFTKHKVAIDRLVQLRLFSE--EKK-KETTYRLNST 103 (406)
Q Consensus 46 ~~VmrlL~~~~~vp~~~l~~Wv~~~~~~~~~~al~~L~~L~I~~~--~~~-~~~~~~Ln~~ 103 (406)
.-|+.+|..+++++.+++..-+.- ++......++.|.+-+++.. ..+ ....|.+++.
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgv-s~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~ 62 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAV-TDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTS-CHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChh
Confidence 446777777788999999998865 47778899999999999974 222 2345666653
No 42
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=20.17 E-value=73 Score=23.69 Aligned_cols=27 Identities=7% Similarity=0.169 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhhcCeeeEeeCCCccee
Q 015452 203 EIQRSMIKDFADLGLVKLQQGRKESWF 229 (406)
Q Consensus 203 ~tq~~~L~~L~~lGLVy~~~~~~~~fy 229 (406)
.|-..+|+.|.+-|+|...+......|
T Consensus 42 ~Tv~~~l~rL~~kGlv~r~~~gr~~~y 68 (82)
T 1p6r_A 42 KTIQTMLLRLIKKGALNHHKEGRVFVY 68 (82)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEecCCEEEE
Confidence 556889999999999987664334444
No 43
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=20.16 E-value=72 Score=25.30 Aligned_cols=48 Identities=13% Similarity=0.118 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCCCCChhHHHhhcCCc---chhHHHHHHHHHHcCceeeec
Q 015452 44 AKKYVFQMLYIDGAIPAKTMEEWVLPD---GFTKHKVAIDRLVQLRLFSEE 91 (406)
Q Consensus 44 ak~~VmrlL~~~~~vp~~~l~~Wv~~~---~~~~~~~al~~L~~L~I~~~~ 91 (406)
++..||..||..+|++..++..-+..+ ........+++|.+-+.+...
T Consensus 11 ~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 566799999998999999999987642 578889999999999999754
Done!