Query 015454
Match_columns 406
No_of_seqs 181 out of 1956
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 06:27:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328 Predicted ATP-dependen 100.0 1.9E-70 4.1E-75 443.8 31.5 397 10-406 4-400 (400)
2 KOG0330 ATP-dependent RNA heli 100.0 9.3E-64 2E-68 422.2 32.6 376 25-401 53-429 (476)
3 KOG0331 ATP-dependent RNA heli 100.0 1.7E-62 3.7E-67 441.4 34.1 370 34-404 92-473 (519)
4 PRK04837 ATP-dependent RNA hel 100.0 3E-61 6.4E-66 448.3 41.6 372 31-403 6-386 (423)
5 PTZ00110 helicase; Provisional 100.0 3.5E-61 7.6E-66 456.4 42.0 379 26-405 123-510 (545)
6 PRK10590 ATP-dependent RNA hel 100.0 5.7E-60 1.2E-64 442.2 41.7 363 34-397 2-370 (456)
7 PRK11776 ATP-dependent RNA hel 100.0 7.2E-60 1.6E-64 443.7 42.4 363 33-397 4-367 (460)
8 PLN00206 DEAD-box ATP-dependen 100.0 6.5E-60 1.4E-64 446.8 42.3 376 27-404 115-500 (518)
9 COG0513 SrmB Superfamily II DN 100.0 1E-59 2.2E-64 442.1 41.4 364 33-396 29-398 (513)
10 PRK11634 ATP-dependent RNA hel 100.0 1.6E-59 3.5E-64 448.5 41.8 367 32-399 5-372 (629)
11 PTZ00424 helicase 45; Provisio 100.0 3.1E-59 6.6E-64 434.4 42.3 375 31-405 26-400 (401)
12 PRK11192 ATP-dependent RNA hel 100.0 5.4E-59 1.2E-63 435.3 43.0 364 34-397 2-370 (434)
13 PRK04537 ATP-dependent RNA hel 100.0 3.3E-59 7.2E-64 444.2 42.2 365 33-398 9-383 (572)
14 PRK01297 ATP-dependent RNA hel 100.0 9.5E-58 2.1E-62 430.3 44.3 367 29-396 83-459 (475)
15 KOG0326 ATP-dependent RNA heli 100.0 4.1E-59 8.9E-64 384.3 21.2 373 30-404 82-454 (459)
16 KOG0333 U5 snRNP-like RNA heli 100.0 3.5E-57 7.6E-62 395.8 34.3 383 20-403 232-649 (673)
17 KOG0345 ATP-dependent RNA heli 100.0 5.3E-56 1.2E-60 383.8 33.1 357 33-390 4-375 (567)
18 KOG0343 RNA Helicase [RNA proc 100.0 4.1E-56 8.8E-61 391.4 31.6 367 29-398 65-441 (758)
19 KOG0338 ATP-dependent RNA heli 100.0 1.7E-56 3.8E-61 390.2 26.9 359 32-390 180-544 (691)
20 KOG0342 ATP-dependent RNA heli 100.0 3.3E-55 7.2E-60 381.3 31.2 356 32-388 81-446 (543)
21 KOG0340 ATP-dependent RNA heli 100.0 6.5E-55 1.4E-59 364.4 30.1 370 31-401 5-383 (442)
22 KOG0335 ATP-dependent RNA heli 100.0 4.6E-55 1E-59 386.6 29.5 383 21-404 62-469 (482)
23 KOG0336 ATP-dependent RNA heli 100.0 6.4E-55 1.4E-59 371.0 27.0 392 10-403 196-596 (629)
24 KOG0327 Translation initiation 100.0 3.7E-54 8.1E-59 364.8 27.1 378 26-406 19-397 (397)
25 KOG0339 ATP-dependent RNA heli 100.0 1.5E-52 3.2E-57 365.4 30.7 380 26-405 216-601 (731)
26 KOG0348 ATP-dependent RNA heli 100.0 2E-52 4.3E-57 366.9 29.4 372 21-392 124-567 (708)
27 KOG0346 RNA helicase [RNA proc 100.0 3.1E-52 6.7E-57 357.5 28.2 361 33-394 19-425 (569)
28 KOG0341 DEAD-box protein abstr 100.0 1.8E-53 4E-58 359.7 18.2 381 23-405 160-555 (610)
29 TIGR03817 DECH_helic helicase/ 100.0 1E-50 2.3E-55 395.4 38.3 351 39-398 20-407 (742)
30 KOG0332 ATP-dependent RNA heli 100.0 2.7E-51 5.9E-56 344.8 27.3 372 26-400 83-465 (477)
31 KOG0347 RNA helicase [RNA proc 100.0 3.8E-51 8.2E-56 359.9 20.9 367 27-395 175-586 (731)
32 PLN03137 ATP-dependent DNA hel 100.0 2.1E-48 4.6E-53 377.3 39.0 343 33-389 435-797 (1195)
33 TIGR00614 recQ_fam ATP-depende 100.0 2.5E-48 5.5E-53 364.7 34.4 323 50-388 6-342 (470)
34 KOG0334 RNA helicase [RNA proc 100.0 8.7E-49 1.9E-53 370.8 28.5 382 21-402 353-743 (997)
35 KOG4284 DEAD box protein [Tran 100.0 7E-48 1.5E-52 345.1 26.5 350 31-381 23-381 (980)
36 PRK11057 ATP-dependent DNA hel 100.0 1.7E-46 3.8E-51 361.0 36.7 320 51-387 21-351 (607)
37 KOG0337 ATP-dependent RNA heli 100.0 9.3E-48 2E-52 328.3 21.8 368 31-399 19-388 (529)
38 TIGR01389 recQ ATP-dependent D 100.0 5.1E-46 1.1E-50 359.2 34.9 323 51-388 9-340 (591)
39 PRK02362 ski2-like helicase; P 100.0 2.4E-46 5.2E-51 369.1 33.1 352 34-398 2-415 (737)
40 KOG0350 DEAD-box ATP-dependent 100.0 2E-46 4.4E-51 326.6 27.5 365 28-393 122-554 (620)
41 PRK13767 ATP-dependent helicas 100.0 1.4E-45 3E-50 366.7 34.5 334 40-378 18-397 (876)
42 COG1201 Lhr Lhr-like helicases 100.0 4E-45 8.7E-50 347.5 32.2 350 40-396 8-381 (814)
43 KOG0344 ATP-dependent RNA heli 100.0 5.9E-46 1.3E-50 331.1 24.9 375 29-403 128-519 (593)
44 PRK00254 ski2-like helicase; P 100.0 1.5E-44 3.3E-49 355.4 32.6 336 34-380 2-389 (720)
45 TIGR00580 mfd transcription-re 100.0 2.2E-42 4.7E-47 340.2 37.5 321 40-379 436-770 (926)
46 PRK01172 ski2-like helicase; P 100.0 5.2E-43 1.1E-47 343.3 31.0 344 34-394 2-391 (674)
47 COG0514 RecQ Superfamily II DN 100.0 2.3E-42 5.1E-47 317.3 30.2 327 51-390 13-348 (590)
48 PRK10689 transcription-repair 100.0 2.4E-41 5.2E-46 339.7 38.2 319 42-379 588-919 (1147)
49 PRK10917 ATP-dependent DNA hel 100.0 4.2E-41 9.2E-46 327.1 38.3 318 42-377 248-587 (681)
50 COG1111 MPH1 ERCC4-like helica 100.0 5.9E-41 1.3E-45 294.7 33.4 322 53-379 13-481 (542)
51 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.8E-41 6.1E-46 323.2 33.1 309 51-370 12-381 (844)
52 TIGR00643 recG ATP-dependent D 100.0 2E-40 4.4E-45 320.4 36.3 315 44-377 225-564 (630)
53 PRK09751 putative ATP-dependen 100.0 3.1E-40 6.8E-45 333.4 33.1 321 75-399 1-407 (1490)
54 PHA02558 uvsW UvsW helicase; P 100.0 1.6E-39 3.4E-44 306.8 30.1 301 54-371 113-444 (501)
55 COG1202 Superfamily II helicas 100.0 9.1E-40 2E-44 289.9 22.5 344 26-379 187-553 (830)
56 COG1205 Distinct helicase fami 100.0 3.4E-38 7.4E-43 308.6 31.6 350 40-392 55-437 (851)
57 KOG0329 ATP-dependent RNA heli 100.0 1.3E-39 2.8E-44 261.0 17.3 334 32-401 41-378 (387)
58 PRK09401 reverse gyrase; Revie 100.0 1.2E-37 2.7E-42 313.7 35.3 283 51-351 77-410 (1176)
59 PHA02653 RNA helicase NPH-II; 100.0 1.4E-37 3E-42 296.3 31.0 316 57-388 166-523 (675)
60 COG1204 Superfamily II helicas 100.0 3.9E-38 8.5E-43 304.0 25.1 334 38-379 14-408 (766)
61 TIGR01587 cas3_core CRISPR-ass 100.0 4E-37 8.6E-42 281.5 28.1 299 72-379 1-336 (358)
62 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1E-36 2.3E-41 297.2 31.8 304 61-382 8-339 (819)
63 PRK13766 Hef nuclease; Provisi 100.0 4E-36 8.7E-41 300.3 36.6 322 54-380 14-480 (773)
64 PRK11664 ATP-dependent RNA hel 100.0 1.5E-36 3.2E-41 296.8 31.0 303 61-381 11-341 (812)
65 KOG0354 DEAD-box like helicase 100.0 8.1E-37 1.7E-41 284.2 26.7 323 54-382 61-532 (746)
66 PRK14701 reverse gyrase; Provi 100.0 2.1E-36 4.6E-41 310.9 30.4 325 43-383 67-460 (1638)
67 TIGR00603 rad25 DNA repair hel 100.0 1.7E-36 3.6E-41 287.6 27.2 316 55-392 255-622 (732)
68 KOG0352 ATP-dependent DNA heli 100.0 1.3E-36 2.7E-41 260.9 20.6 333 44-391 7-374 (641)
69 TIGR03158 cas3_cyano CRISPR-as 100.0 4.1E-35 8.9E-40 264.9 30.1 289 59-364 1-357 (357)
70 TIGR01054 rgy reverse gyrase. 100.0 8.9E-35 1.9E-39 293.6 34.2 282 52-350 75-408 (1171)
71 KOG0351 ATP-dependent DNA heli 100.0 2.4E-35 5.2E-40 286.6 27.3 332 46-389 255-602 (941)
72 PRK12898 secA preprotein trans 100.0 3.4E-34 7.3E-39 268.9 29.9 318 51-381 100-588 (656)
73 TIGR03714 secA2 accessory Sec 100.0 5.1E-34 1.1E-38 270.8 29.5 317 56-381 69-539 (762)
74 COG1200 RecG RecG-like helicas 100.0 1.9E-33 4.2E-38 258.0 30.9 324 39-380 246-592 (677)
75 PRK09200 preprotein translocas 100.0 2E-33 4.3E-38 269.3 30.0 319 51-381 75-543 (790)
76 COG1061 SSL2 DNA or RNA helica 100.0 6.5E-34 1.4E-38 263.2 25.3 292 55-366 36-376 (442)
77 KOG0353 ATP-dependent DNA heli 100.0 3.1E-34 6.8E-39 243.1 20.8 340 35-386 73-474 (695)
78 KOG0952 DNA/RNA helicase MER3/ 100.0 1.1E-33 2.5E-38 266.8 25.0 329 51-388 106-500 (1230)
79 TIGR00963 secA preprotein tran 100.0 1.1E-32 2.3E-37 260.2 30.0 318 51-381 53-519 (745)
80 PRK04914 ATP-dependent helicas 100.0 5.1E-32 1.1E-36 265.9 30.1 334 55-393 152-617 (956)
81 KOG0349 Putative DEAD-box RNA 100.0 1.4E-32 3.1E-37 236.5 18.3 278 104-381 289-617 (725)
82 PRK11131 ATP-dependent RNA hel 100.0 3E-31 6.5E-36 264.2 28.6 302 59-383 78-415 (1294)
83 PRK05580 primosome assembly pr 100.0 1.1E-30 2.4E-35 253.2 31.9 310 55-384 144-554 (679)
84 cd00268 DEADc DEAD-box helicas 100.0 5.9E-31 1.3E-35 221.4 24.1 200 35-234 1-202 (203)
85 PRK09694 helicase Cas3; Provis 100.0 2.9E-30 6.2E-35 252.1 32.2 311 53-368 284-664 (878)
86 COG4098 comFA Superfamily II D 100.0 6.1E-30 1.3E-34 214.2 27.3 314 55-391 97-428 (441)
87 KOG0947 Cytoplasmic exosomal R 100.0 6.6E-31 1.4E-35 245.7 23.3 311 51-379 294-723 (1248)
88 COG1197 Mfd Transcription-repa 100.0 2.8E-29 6.1E-34 243.3 33.1 321 40-379 579-913 (1139)
89 KOG0948 Nuclear exosomal RNA h 100.0 9.2E-31 2E-35 239.1 18.5 317 55-387 129-548 (1041)
90 TIGR00595 priA primosomal prot 100.0 2E-29 4.4E-34 236.0 27.0 288 74-380 1-382 (505)
91 KOG0951 RNA helicase BRR2, DEA 100.0 1.4E-29 3.1E-34 242.4 25.2 339 40-386 296-709 (1674)
92 PRK11448 hsdR type I restricti 100.0 3.6E-29 7.8E-34 251.4 27.6 307 55-368 413-802 (1123)
93 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.9E-29 6.3E-34 251.0 26.2 303 61-383 73-408 (1283)
94 COG4581 Superfamily II RNA hel 100.0 8.4E-29 1.8E-33 239.9 25.3 312 50-375 115-533 (1041)
95 PLN03142 Probable chromatin-re 100.0 8.8E-28 1.9E-32 237.0 27.6 313 55-375 169-593 (1033)
96 PRK12904 preprotein translocas 100.0 7.2E-27 1.6E-31 223.7 28.8 316 51-380 78-574 (830)
97 PRK13104 secA preprotein trans 100.0 6.8E-27 1.5E-31 224.2 27.0 314 55-380 82-588 (896)
98 PF00270 DEAD: DEAD/DEAH box h 100.0 9.4E-27 2E-31 190.1 19.2 163 57-220 1-166 (169)
99 PRK12906 secA preprotein trans 100.0 2.6E-26 5.6E-31 219.0 24.9 318 51-381 77-555 (796)
100 KOG0950 DNA polymerase theta/e 100.0 4.3E-27 9.4E-32 221.5 19.3 328 45-386 213-618 (1008)
101 PRK12899 secA preprotein trans 99.9 1.7E-25 3.6E-30 214.3 28.1 149 35-188 64-228 (970)
102 COG1203 CRISPR-associated heli 99.9 2.6E-26 5.7E-31 225.0 23.3 320 55-379 195-550 (733)
103 COG1643 HrpA HrpA-like helicas 99.9 1.5E-24 3.2E-29 209.2 25.4 309 57-381 52-389 (845)
104 TIGR00348 hsdR type I site-spe 99.9 4.3E-24 9.3E-29 207.4 27.2 299 55-366 238-634 (667)
105 COG4096 HsdR Type I site-speci 99.9 1.4E-24 3.1E-29 202.6 22.2 294 55-366 165-525 (875)
106 PRK13107 preprotein translocas 99.9 2.3E-24 4.9E-29 206.3 23.3 315 55-381 82-593 (908)
107 KOG0387 Transcription-coupled 99.9 2.3E-23 5E-28 192.5 27.1 329 55-391 205-670 (923)
108 KOG0385 Chromatin remodeling c 99.9 9.6E-24 2.1E-28 194.1 24.4 329 55-391 167-613 (971)
109 KOG0922 DEAH-box RNA helicase 99.9 9.6E-24 2.1E-28 192.6 23.4 307 58-383 54-394 (674)
110 COG1110 Reverse gyrase [DNA re 99.9 2.6E-23 5.5E-28 197.4 26.6 279 52-350 80-416 (1187)
111 TIGR01407 dinG_rel DnaQ family 99.9 2.8E-22 6E-27 200.9 33.2 343 41-392 232-829 (850)
112 KOG0390 DNA repair protein, SN 99.9 2.3E-21 5E-26 183.5 29.3 311 55-375 238-701 (776)
113 COG1198 PriA Primosomal protei 99.9 9.6E-22 2.1E-26 187.1 24.8 313 55-387 198-611 (730)
114 TIGR00631 uvrb excinuclease AB 99.9 1.8E-20 3.9E-25 180.1 32.3 131 259-390 427-564 (655)
115 KOG0949 Predicted helicase, DE 99.9 1.4E-21 3.1E-26 184.1 21.7 160 55-219 511-674 (1330)
116 KOG0923 mRNA splicing factor A 99.9 1.1E-20 2.3E-25 171.6 23.1 302 57-379 267-606 (902)
117 smart00487 DEXDc DEAD-like hel 99.9 1.3E-20 2.9E-25 158.2 21.8 185 51-236 4-190 (201)
118 COG4889 Predicted helicase [Ge 99.9 3E-22 6.6E-27 186.6 11.7 328 33-367 140-573 (1518)
119 COG0556 UvrB Helicase subunit 99.9 3.7E-20 8.1E-25 164.7 23.6 165 207-379 387-557 (663)
120 KOG1123 RNA polymerase II tran 99.9 3.3E-21 7.2E-26 169.7 16.8 290 55-367 302-635 (776)
121 PRK05298 excinuclease ABC subu 99.9 1.9E-19 4.1E-24 174.4 30.1 143 259-402 431-589 (652)
122 PRK07246 bifunctional ATP-depe 99.9 2.8E-19 6.1E-24 176.8 31.4 328 51-392 242-798 (820)
123 PRK12900 secA preprotein trans 99.9 9.6E-21 2.1E-25 182.5 20.2 123 257-381 581-713 (1025)
124 KOG0392 SNF2 family DNA-depend 99.9 1.4E-20 3E-25 181.1 20.9 328 55-390 975-1466(1549)
125 KOG0920 ATP-dependent RNA heli 99.9 8E-21 1.7E-25 182.9 18.8 315 57-382 175-547 (924)
126 KOG0384 Chromodomain-helicase 99.9 2.9E-21 6.3E-26 186.2 14.8 329 54-391 369-825 (1373)
127 PRK12326 preprotein translocas 99.9 3.1E-19 6.8E-24 167.4 26.7 316 51-380 75-548 (764)
128 KOG1000 Chromatin remodeling p 99.9 1.6E-19 3.4E-24 159.0 23.1 336 43-391 186-617 (689)
129 KOG0389 SNF2 family DNA-depend 99.9 6.6E-20 1.4E-24 169.7 21.5 322 52-381 397-890 (941)
130 PRK13103 secA preprotein trans 99.8 6.9E-19 1.5E-23 169.1 22.3 315 52-380 80-592 (913)
131 TIGR03117 cas_csf4 CRISPR-asso 99.8 1.9E-17 4E-22 156.9 30.4 116 261-379 460-616 (636)
132 KOG0926 DEAH-box RNA helicase 99.8 3E-19 6.5E-24 165.4 17.5 304 62-378 263-703 (1172)
133 PRK08074 bifunctional ATP-depe 99.8 2E-17 4.2E-22 166.8 31.6 121 271-391 751-907 (928)
134 KOG0924 mRNA splicing factor A 99.8 4.1E-19 8.8E-24 161.9 17.1 303 57-379 358-697 (1042)
135 KOG4150 Predicted ATP-dependen 99.8 8E-19 1.7E-23 157.1 16.7 350 51-403 282-666 (1034)
136 cd00079 HELICc Helicase superf 99.8 7.1E-19 1.5E-23 137.0 14.5 118 258-375 12-131 (131)
137 KOG0953 Mitochondrial RNA heli 99.8 2.5E-18 5.5E-23 153.5 16.1 279 73-397 194-491 (700)
138 cd00046 DEXDc DEAD-like helica 99.8 8.4E-18 1.8E-22 133.0 16.6 144 71-216 1-144 (144)
139 KOG0925 mRNA splicing factor A 99.8 2.4E-17 5.1E-22 145.1 20.6 321 31-379 23-387 (699)
140 PF04851 ResIII: Type III rest 99.8 2.5E-18 5.5E-23 142.3 13.1 152 55-217 3-183 (184)
141 PRK12903 secA preprotein trans 99.8 3.1E-17 6.8E-22 156.3 21.8 315 52-380 76-540 (925)
142 KOG4439 RNA polymerase II tran 99.8 6.2E-17 1.4E-21 148.4 20.4 118 271-388 745-868 (901)
143 PF00271 Helicase_C: Helicase 99.8 2.1E-18 4.4E-23 120.8 7.9 78 290-367 1-78 (78)
144 CHL00122 secA preprotein trans 99.8 2.1E-16 4.6E-21 151.5 22.9 276 51-339 73-491 (870)
145 COG1199 DinG Rad3-related DNA 99.7 6.3E-16 1.4E-20 152.5 26.0 135 260-398 468-638 (654)
146 TIGR02562 cas3_yersinia CRISPR 99.7 2E-16 4.4E-21 153.7 21.6 324 56-384 409-899 (1110)
147 PRK11747 dinG ATP-dependent DN 99.7 7.6E-15 1.7E-19 143.7 31.3 112 262-379 526-674 (697)
148 KOG1002 Nucleotide excision re 99.7 2.8E-15 6.1E-20 132.5 22.9 109 273-381 639-751 (791)
149 TIGR00604 rad3 DNA repair heli 99.7 5.4E-15 1.2E-19 146.0 27.3 133 265-398 516-695 (705)
150 KOG0388 SNF2 family DNA-depend 99.7 5.9E-16 1.3E-20 142.1 18.1 117 259-375 1029-1148(1185)
151 KOG0951 RNA helicase BRR2, DEA 99.7 7.2E-16 1.6E-20 149.6 19.2 311 55-387 1143-1502(1674)
152 KOG0391 SNF2 family DNA-depend 99.7 3.1E-15 6.7E-20 143.9 21.9 122 259-380 1261-1388(1958)
153 KOG0386 Chromatin remodeling c 99.7 1.3E-16 2.7E-21 151.8 12.0 317 55-378 394-835 (1157)
154 PF02399 Herpes_ori_bp: Origin 99.7 1.3E-14 2.9E-19 137.7 23.4 287 72-379 51-388 (824)
155 PRK12902 secA preprotein trans 99.7 8E-15 1.7E-19 140.6 21.8 129 52-188 83-218 (939)
156 smart00490 HELICc helicase sup 99.6 1E-15 2.2E-20 108.4 8.8 81 287-367 2-82 (82)
157 COG0610 Type I site-specific r 99.6 4.1E-13 8.9E-18 135.0 25.8 308 71-391 274-663 (962)
158 PRK14873 primosome assembly pr 99.6 2.4E-13 5.2E-18 130.9 22.4 140 74-225 164-312 (665)
159 PF06862 DUF1253: Protein of u 99.6 8.2E-12 1.8E-16 113.0 28.3 289 99-387 35-423 (442)
160 KOG1015 Transcription regulato 99.6 2.2E-13 4.7E-18 129.1 18.6 116 260-375 1128-1271(1567)
161 PRK12901 secA preprotein trans 99.6 3.4E-13 7.4E-18 131.1 19.5 119 259-380 613-742 (1112)
162 COG0553 HepA Superfamily II DN 99.5 2.2E-12 4.7E-17 132.6 24.5 317 54-375 337-816 (866)
163 PF07652 Flavi_DEAD: Flaviviru 99.5 1.2E-13 2.7E-18 103.9 8.1 135 69-219 3-139 (148)
164 PF00176 SNF2_N: SNF2 family N 99.4 7.7E-13 1.7E-17 118.4 12.2 155 59-217 1-173 (299)
165 smart00488 DEXDc2 DEAD-like he 99.2 1.1E-10 2.4E-15 102.4 12.8 73 51-124 5-84 (289)
166 smart00489 DEXDc3 DEAD-like he 99.2 1.1E-10 2.4E-15 102.4 12.8 73 51-124 5-84 (289)
167 KOG2340 Uncharacterized conser 99.2 2.4E-09 5.2E-14 96.3 18.3 333 54-387 215-676 (698)
168 PRK15483 type III restriction- 99.2 3.9E-08 8.5E-13 97.2 26.9 73 322-394 501-583 (986)
169 COG0653 SecA Preprotein transl 99.1 1.4E-09 3.1E-14 104.7 16.0 312 57-379 80-545 (822)
170 KOG1016 Predicted DNA helicase 99.1 3.8E-08 8.2E-13 92.6 22.9 104 274-377 721-845 (1387)
171 PF07517 SecA_DEAD: SecA DEAD- 98.9 3.7E-08 8.1E-13 84.2 14.4 130 51-188 74-210 (266)
172 PF13872 AAA_34: P-loop contai 98.9 2.4E-08 5.2E-13 85.5 12.5 170 35-218 23-222 (303)
173 KOG1133 Helicase of the DEAD s 98.9 3.7E-06 8E-11 78.8 25.9 112 264-379 622-780 (821)
174 KOG1001 Helicase-like transcri 98.9 1.6E-08 3.4E-13 97.5 11.1 101 274-374 541-643 (674)
175 PF13307 Helicase_C_2: Helicas 98.9 1.1E-08 2.4E-13 82.3 8.6 112 265-379 3-150 (167)
176 PF13086 AAA_11: AAA domain; P 98.8 2.7E-08 5.8E-13 85.6 10.2 69 55-123 1-75 (236)
177 COG3587 Restriction endonuclea 98.8 3.3E-07 7.3E-12 87.6 17.9 73 321-393 482-567 (985)
178 KOG1131 RNA polymerase II tran 98.7 9.7E-06 2.1E-10 73.6 23.1 126 273-399 531-703 (755)
179 KOG0921 Dosage compensation co 98.6 9.1E-07 2E-11 84.9 13.6 304 61-377 384-772 (1282)
180 TIGR00596 rad1 DNA repair prot 98.6 2.6E-06 5.6E-11 84.4 16.9 69 150-218 6-74 (814)
181 PF13604 AAA_30: AAA domain; P 98.5 5.9E-07 1.3E-11 74.4 9.4 123 55-215 1-130 (196)
182 KOG0952 DNA/RNA helicase MER3/ 98.5 1.9E-08 4.1E-13 97.7 0.3 132 55-190 927-1061(1230)
183 PF02562 PhoH: PhoH-like prote 98.5 7.3E-07 1.6E-11 73.2 8.9 144 56-215 5-155 (205)
184 COG3421 Uncharacterized protei 98.5 1.4E-06 3E-11 80.3 11.3 150 75-228 2-176 (812)
185 PF12340 DUF3638: Protein of u 98.5 2.3E-06 5E-11 70.8 11.5 129 33-166 3-145 (229)
186 KOG1802 RNA helicase nonsense 98.5 8E-07 1.7E-11 82.7 8.9 77 47-125 402-478 (935)
187 PRK10875 recD exonuclease V su 98.3 8.5E-06 1.8E-10 78.7 13.1 142 56-215 153-301 (615)
188 PF13245 AAA_19: Part of AAA d 98.3 2.6E-06 5.7E-11 58.1 6.7 52 70-121 10-62 (76)
189 PF09848 DUF2075: Uncharacteri 98.3 4.1E-06 9E-11 76.3 9.8 108 72-202 3-117 (352)
190 TIGR01448 recD_rel helicase, p 98.3 1.1E-05 2.4E-10 80.0 13.0 128 51-215 320-452 (720)
191 TIGR01447 recD exodeoxyribonuc 98.2 1.6E-05 3.4E-10 76.7 12.6 141 57-215 147-295 (586)
192 PRK10536 hypothetical protein; 98.2 2.5E-05 5.4E-10 66.1 12.1 140 52-211 56-208 (262)
193 KOG1803 DNA helicase [Replicat 98.1 1.4E-05 3.1E-10 74.1 9.3 65 55-122 185-250 (649)
194 smart00491 HELICc2 helicase su 98.1 2.2E-05 4.8E-10 61.0 8.8 95 285-379 4-139 (142)
195 KOG1132 Helicase of the DEAD s 98.1 2.5E-05 5.4E-10 75.5 10.7 71 55-125 21-134 (945)
196 smart00492 HELICc3 helicase su 98.1 4.1E-05 8.8E-10 59.4 9.8 78 301-378 26-137 (141)
197 KOG0989 Replication factor C, 98.0 2.7E-05 5.8E-10 66.4 8.4 59 171-230 125-186 (346)
198 PF00580 UvrD-helicase: UvrD/R 98.0 1.8E-05 3.9E-10 71.3 7.3 122 56-185 1-125 (315)
199 TIGR02768 TraA_Ti Ti-type conj 97.9 0.00015 3.2E-09 72.4 12.7 122 55-214 352-475 (744)
200 PRK13889 conjugal transfer rel 97.8 0.00015 3.4E-09 73.5 11.5 126 51-215 343-470 (988)
201 PF13401 AAA_22: AAA domain; P 97.8 8.5E-05 1.8E-09 57.3 6.5 37 177-216 89-125 (131)
202 PRK08181 transposase; Validate 97.7 0.0007 1.5E-08 58.7 12.1 57 57-117 89-149 (269)
203 PF13871 Helicase_C_4: Helicas 97.7 0.00013 2.9E-09 62.6 7.4 83 313-396 52-143 (278)
204 PRK13826 Dtr system oriT relax 97.7 0.00058 1.3E-08 70.0 12.8 137 40-215 367-505 (1102)
205 KOG0298 DEAD box-containing he 97.6 0.0003 6.4E-09 70.9 9.0 145 70-219 374-553 (1394)
206 TIGR00376 DNA helicase, putati 97.6 0.00023 4.9E-09 69.8 8.2 67 54-123 156-223 (637)
207 PRK06526 transposase; Provisio 97.6 0.00062 1.4E-08 58.7 10.0 30 66-95 94-123 (254)
208 KOG1805 DNA replication helica 97.6 0.00045 9.7E-09 67.8 9.6 124 54-188 668-809 (1100)
209 COG1875 NYN ribonuclease and A 97.6 0.0006 1.3E-08 59.9 9.4 64 51-114 224-289 (436)
210 TIGR01075 uvrD DNA helicase II 97.5 0.00037 8E-09 70.0 9.1 70 54-125 3-73 (715)
211 PRK04296 thymidine kinase; Pro 97.5 0.0002 4.3E-09 59.1 5.6 35 72-109 4-38 (190)
212 PRK11773 uvrD DNA-dependent he 97.5 0.0004 8.6E-09 69.7 8.5 69 55-125 9-78 (721)
213 PRK12723 flagellar biosynthesi 97.5 0.0014 3E-08 59.9 11.2 121 71-219 175-300 (388)
214 cd00009 AAA The AAA+ (ATPases 97.5 0.0016 3.4E-08 51.1 10.2 19 70-88 19-37 (151)
215 smart00382 AAA ATPases associa 97.4 0.00047 1E-08 53.7 6.5 41 70-113 2-42 (148)
216 PRK10919 ATP-dependent DNA hel 97.4 0.00033 7.2E-09 69.4 6.6 69 55-125 2-71 (672)
217 PF00308 Bac_DnaA: Bacterial d 97.3 0.00085 1.9E-08 56.6 7.0 105 72-218 36-142 (219)
218 PRK11054 helD DNA helicase IV; 97.3 0.0012 2.5E-08 65.3 8.6 79 54-134 195-274 (684)
219 TIGR01074 rep ATP-dependent DN 97.2 0.0017 3.7E-08 64.9 9.5 68 56-125 2-70 (664)
220 KOG1513 Nuclear helicase MOP-3 97.2 0.0011 2.3E-08 63.8 7.5 156 53-215 262-453 (1300)
221 TIGR02785 addA_Gpos recombinat 97.2 0.002 4.3E-08 68.4 10.4 123 56-186 2-126 (1232)
222 PRK00149 dnaA chromosomal repl 97.2 0.0034 7.4E-08 59.4 10.5 49 71-121 149-197 (450)
223 KOG0383 Predicted helicase [Ge 97.1 2.7E-05 5.9E-10 74.8 -3.8 62 273-335 632-696 (696)
224 TIGR00362 DnaA chromosomal rep 97.1 0.0039 8.4E-08 58.3 9.7 43 72-116 138-180 (405)
225 TIGR02760 TraI_TIGR conjugativ 97.0 0.035 7.5E-07 61.6 17.8 135 55-215 429-566 (1960)
226 TIGR03420 DnaA_homol_Hda DnaA 97.0 0.005 1.1E-07 52.4 9.3 23 69-91 37-59 (226)
227 cd01124 KaiC KaiC is a circadi 97.0 0.01 2.2E-07 48.8 10.5 49 73-125 2-50 (187)
228 PF05127 Helicase_RecD: Helica 97.0 0.00069 1.5E-08 54.3 3.2 124 74-217 1-124 (177)
229 TIGR01073 pcrA ATP-dependent D 97.0 0.0037 8E-08 63.0 9.2 70 54-125 3-73 (726)
230 PRK14088 dnaA chromosomal repl 97.0 0.0079 1.7E-07 56.6 10.7 45 71-117 131-175 (440)
231 PRK14087 dnaA chromosomal repl 97.0 0.0052 1.1E-07 57.9 9.5 108 71-218 142-250 (450)
232 PRK05642 DNA replication initi 96.9 0.0035 7.6E-08 53.6 7.4 44 175-218 97-141 (234)
233 COG1435 Tdk Thymidine kinase [ 96.9 0.011 2.5E-07 47.6 9.6 103 72-202 6-108 (201)
234 PRK14974 cell division protein 96.9 0.013 2.9E-07 52.6 11.1 129 72-227 142-275 (336)
235 cd01120 RecA-like_NTPases RecA 96.9 0.012 2.6E-07 47.0 10.1 37 73-112 2-38 (165)
236 PRK07952 DNA replication prote 96.9 0.011 2.4E-07 50.5 10.1 34 71-107 100-133 (244)
237 PRK05707 DNA polymerase III su 96.8 0.0068 1.5E-07 54.4 8.9 36 55-90 3-42 (328)
238 PF03354 Terminase_1: Phage Te 96.8 0.0027 5.9E-08 60.5 6.7 147 58-212 1-159 (477)
239 PF14617 CMS1: U3-containing 9 96.8 0.0037 8E-08 53.2 6.5 86 100-186 125-212 (252)
240 PRK08116 hypothetical protein; 96.8 0.022 4.7E-07 49.7 11.5 43 72-118 116-158 (268)
241 PF00448 SRP54: SRP54-type pro 96.8 0.0097 2.1E-07 49.2 8.8 128 73-226 4-135 (196)
242 PRK11889 flhF flagellar biosyn 96.8 0.028 6E-07 51.1 12.1 127 71-227 242-374 (436)
243 PRK08769 DNA polymerase III su 96.8 0.016 3.4E-07 51.7 10.4 143 54-215 3-152 (319)
244 PRK12377 putative replication 96.8 0.017 3.7E-07 49.5 10.2 45 71-119 102-146 (248)
245 PRK06893 DNA replication initi 96.7 0.0048 1E-07 52.6 6.8 46 174-219 90-137 (229)
246 PRK08727 hypothetical protein; 96.7 0.0072 1.6E-07 51.6 7.9 35 71-108 42-76 (233)
247 PRK13709 conjugal transfer nic 96.7 0.014 3E-07 63.2 11.4 63 55-118 967-1033(1747)
248 PHA02533 17 large terminase pr 96.7 0.0087 1.9E-07 57.4 9.0 147 55-215 59-209 (534)
249 PRK13833 conjugal transfer pro 96.7 0.0065 1.4E-07 54.1 7.4 63 48-113 123-186 (323)
250 PRK14956 DNA polymerase III su 96.7 0.011 2.5E-07 55.2 9.1 19 73-91 43-61 (484)
251 PF13177 DNA_pol3_delta2: DNA 96.7 0.012 2.5E-07 47.2 8.1 43 174-217 101-143 (162)
252 PRK14712 conjugal transfer nic 96.6 0.0091 2E-07 63.7 9.3 63 55-118 835-901 (1623)
253 COG1484 DnaC DNA replication p 96.6 0.0096 2.1E-07 51.4 8.0 49 69-121 104-152 (254)
254 PRK06921 hypothetical protein; 96.6 0.037 8E-07 48.2 11.6 44 70-116 117-160 (266)
255 PRK08084 DNA replication initi 96.6 0.0068 1.5E-07 51.9 7.0 19 71-89 46-64 (235)
256 PLN03025 replication factor C 96.6 0.029 6.3E-07 50.5 11.4 41 174-216 98-138 (319)
257 PRK14086 dnaA chromosomal repl 96.6 0.012 2.6E-07 56.7 9.0 104 72-218 316-421 (617)
258 COG1419 FlhF Flagellar GTP-bin 96.6 0.01 2.2E-07 53.7 7.9 132 70-228 203-336 (407)
259 PRK12422 chromosomal replicati 96.6 0.021 4.6E-07 53.6 10.5 42 71-116 142-183 (445)
260 PRK09183 transposase/IS protei 96.6 0.036 7.7E-07 48.2 11.2 46 67-116 99-144 (259)
261 cd01122 GP4d_helicase GP4d_hel 96.6 0.015 3.2E-07 51.2 8.8 55 66-123 26-80 (271)
262 PRK05703 flhF flagellar biosyn 96.6 0.05 1.1E-06 50.8 12.7 123 70-222 221-348 (424)
263 PRK00411 cdc6 cell division co 96.5 0.021 4.6E-07 53.2 10.3 36 71-107 56-91 (394)
264 TIGR02881 spore_V_K stage V sp 96.5 0.013 2.9E-07 51.1 8.0 19 71-89 43-61 (261)
265 TIGR01547 phage_term_2 phage t 96.5 0.0075 1.6E-07 56.2 6.8 136 73-219 4-143 (396)
266 PF00004 AAA: ATPase family as 96.4 0.041 8.9E-07 42.1 9.8 16 176-191 59-74 (132)
267 TIGR02782 TrbB_P P-type conjug 96.4 0.014 3.1E-07 51.7 8.0 57 56-113 117-174 (299)
268 PRK06835 DNA replication prote 96.4 0.031 6.7E-07 50.2 10.1 44 70-117 183-226 (329)
269 PRK07003 DNA polymerase III su 96.4 0.024 5.3E-07 55.7 10.0 39 174-213 118-156 (830)
270 PF06745 KaiC: KaiC; InterPro 96.4 0.012 2.7E-07 50.0 7.4 53 70-125 19-71 (226)
271 PRK13894 conjugal transfer ATP 96.4 0.01 2.3E-07 53.0 7.1 65 46-113 125-190 (319)
272 PRK14960 DNA polymerase III su 96.4 0.015 3.2E-07 56.4 8.3 39 174-213 117-155 (702)
273 CHL00181 cbbX CbbX; Provisiona 96.4 0.022 4.8E-07 50.2 8.8 21 70-90 59-79 (287)
274 PRK12402 replication factor C 96.4 0.032 6.9E-07 50.8 10.3 39 174-213 124-162 (337)
275 PRK08533 flagellar accessory p 96.4 0.047 1E-06 46.5 10.4 54 68-125 22-75 (230)
276 PRK14964 DNA polymerase III su 96.4 0.031 6.8E-07 52.8 10.1 40 173-213 114-153 (491)
277 PRK08903 DnaA regulatory inact 96.3 0.025 5.4E-07 48.2 8.8 43 175-218 90-133 (227)
278 PRK14958 DNA polymerase III su 96.3 0.027 5.9E-07 53.9 9.5 39 174-213 118-156 (509)
279 PRK14949 DNA polymerase III su 96.3 0.026 5.6E-07 56.6 9.5 38 174-212 118-155 (944)
280 PTZ00112 origin recognition co 96.3 0.067 1.5E-06 53.5 12.1 28 174-202 868-895 (1164)
281 PRK06090 DNA polymerase III su 96.3 0.062 1.3E-06 47.9 11.0 37 55-91 3-46 (319)
282 PRK12323 DNA polymerase III su 96.3 0.031 6.7E-07 54.2 9.5 41 174-215 123-163 (700)
283 PTZ00293 thymidine kinase; Pro 96.2 0.034 7.3E-07 46.1 8.5 38 71-111 5-42 (211)
284 PRK06964 DNA polymerase III su 96.2 0.05 1.1E-06 49.1 10.3 36 56-91 2-42 (342)
285 PRK07764 DNA polymerase III su 96.2 0.044 9.5E-07 55.4 10.9 39 174-213 119-157 (824)
286 COG2805 PilT Tfp pilus assembl 96.2 0.06 1.3E-06 46.6 10.1 70 9-99 84-153 (353)
287 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.028 6.1E-07 48.2 8.4 52 70-125 21-72 (237)
288 KOG0298 DEAD box-containing he 96.2 0.0066 1.4E-07 61.7 4.9 113 273-390 1222-1338(1394)
289 PRK14722 flhF flagellar biosyn 96.2 0.018 4E-07 52.3 7.4 126 70-222 137-263 (374)
290 TIGR02760 TraI_TIGR conjugativ 96.1 0.018 4E-07 63.7 8.3 62 55-118 1019-1085(1960)
291 PRK14962 DNA polymerase III su 96.1 0.049 1.1E-06 51.6 10.1 18 73-90 39-56 (472)
292 PHA03368 DNA packaging termina 96.1 0.019 4E-07 55.3 7.1 132 71-216 255-390 (738)
293 PRK08699 DNA polymerase III su 96.1 0.062 1.4E-06 48.3 10.2 35 56-90 2-41 (325)
294 PRK14961 DNA polymerase III su 96.0 0.044 9.6E-07 50.3 9.4 39 174-213 118-156 (363)
295 COG2909 MalT ATP-dependent tra 96.0 0.017 3.7E-07 56.7 6.8 44 174-217 128-171 (894)
296 COG4626 Phage terminase-like p 96.0 0.048 1E-06 51.3 9.4 147 55-215 61-224 (546)
297 PRK06871 DNA polymerase III su 96.0 0.039 8.4E-07 49.3 8.6 36 56-91 3-45 (325)
298 COG1474 CDC6 Cdc6-related prot 96.0 0.15 3.2E-06 46.7 12.4 104 71-204 43-151 (366)
299 PRK07993 DNA polymerase III su 96.0 0.029 6.3E-07 50.6 7.8 37 55-91 2-45 (334)
300 TIGR02880 cbbX_cfxQ probable R 95.9 0.05 1.1E-06 48.0 8.8 19 70-88 58-76 (284)
301 PRK14721 flhF flagellar biosyn 95.9 0.067 1.5E-06 49.5 9.9 126 70-222 191-317 (420)
302 PHA02544 44 clamp loader, smal 95.9 0.043 9.3E-07 49.4 8.4 40 175-215 100-139 (316)
303 PF05621 TniB: Bacterial TniB 95.9 0.029 6.3E-07 48.9 6.8 112 71-208 62-180 (302)
304 PRK14951 DNA polymerase III su 95.9 0.053 1.2E-06 52.8 9.3 39 174-213 123-161 (618)
305 PHA03333 putative ATPase subun 95.9 0.089 1.9E-06 51.1 10.5 57 68-126 185-241 (752)
306 PRK14957 DNA polymerase III su 95.8 0.074 1.6E-06 51.1 10.1 40 173-213 117-156 (546)
307 COG0470 HolB ATPase involved i 95.8 0.08 1.7E-06 47.9 10.0 40 174-214 108-147 (325)
308 COG2256 MGS1 ATPase related to 95.8 0.022 4.7E-07 51.2 6.0 19 71-89 49-67 (436)
309 TIGR03881 KaiC_arch_4 KaiC dom 95.8 0.083 1.8E-06 45.1 9.5 52 69-124 19-70 (229)
310 PF13173 AAA_14: AAA domain 95.8 0.17 3.6E-06 38.6 10.2 42 175-220 61-102 (128)
311 PRK06731 flhF flagellar biosyn 95.8 0.13 2.8E-06 44.8 10.5 127 71-227 76-208 (270)
312 PRK14952 DNA polymerase III su 95.8 0.078 1.7E-06 51.4 10.1 39 174-213 117-155 (584)
313 PRK08691 DNA polymerase III su 95.8 0.064 1.4E-06 52.5 9.4 39 174-213 118-156 (709)
314 TIGR02928 orc1/cdc6 family rep 95.8 0.07 1.5E-06 49.2 9.6 24 71-95 41-64 (365)
315 PRK06995 flhF flagellar biosyn 95.7 0.064 1.4E-06 50.6 9.0 24 71-94 257-280 (484)
316 COG2804 PulE Type II secretory 95.7 0.023 5.1E-07 52.8 6.0 41 57-98 243-285 (500)
317 PF05876 Terminase_GpA: Phage 95.7 0.022 4.8E-07 55.2 6.1 125 55-188 16-147 (557)
318 PRK11331 5-methylcytosine-spec 95.7 0.062 1.3E-06 49.9 8.6 33 56-88 180-212 (459)
319 COG3973 Superfamily I DNA and 95.7 0.031 6.7E-07 52.8 6.7 87 38-125 187-284 (747)
320 PRK00440 rfc replication facto 95.7 0.12 2.7E-06 46.5 10.7 38 175-213 102-139 (319)
321 PRK11823 DNA repair protein Ra 95.7 0.057 1.2E-06 50.9 8.6 52 70-125 80-131 (446)
322 PRK07994 DNA polymerase III su 95.7 0.033 7.1E-07 54.5 7.1 38 174-212 118-155 (647)
323 PRK08939 primosomal protein Dn 95.6 0.12 2.5E-06 46.1 9.8 20 70-89 156-175 (306)
324 PRK04195 replication factor C 95.6 0.075 1.6E-06 50.9 9.2 20 70-89 39-58 (482)
325 PRK10917 ATP-dependent DNA hel 95.6 0.083 1.8E-06 52.9 9.8 76 272-347 310-390 (681)
326 PRK14969 DNA polymerase III su 95.6 0.08 1.7E-06 51.1 9.4 40 173-213 117-156 (527)
327 PRK14723 flhF flagellar biosyn 95.6 0.18 4E-06 50.1 11.9 121 72-219 187-308 (767)
328 PRK00771 signal recognition pa 95.6 0.13 2.8E-06 48.2 10.3 50 177-226 177-227 (437)
329 PRK06645 DNA polymerase III su 95.6 0.16 3.4E-06 48.6 11.1 20 71-90 44-63 (507)
330 COG3972 Superfamily I DNA and 95.6 0.091 2E-06 48.5 9.0 80 43-125 151-230 (660)
331 PRK09111 DNA polymerase III su 95.6 0.1 2.2E-06 50.9 10.0 40 173-213 130-169 (598)
332 COG4962 CpaF Flp pilus assembl 95.5 0.046 9.9E-07 48.3 6.8 59 52-114 154-213 (355)
333 KOG0733 Nuclear AAA ATPase (VC 95.5 0.18 3.9E-06 48.0 10.9 82 174-269 603-694 (802)
334 COG1444 Predicted P-loop ATPas 95.5 0.15 3.2E-06 50.4 10.9 148 48-216 207-356 (758)
335 TIGR00678 holB DNA polymerase 95.5 0.17 3.8E-06 41.6 10.1 40 173-213 94-133 (188)
336 COG0593 DnaA ATPase involved i 95.5 0.13 2.7E-06 47.3 9.6 106 71-219 114-221 (408)
337 PRK06067 flagellar accessory p 95.5 0.14 3E-06 43.9 9.6 52 70-125 25-76 (234)
338 PRK05580 primosome assembly pr 95.5 0.13 2.8E-06 51.4 10.6 77 272-349 190-267 (679)
339 PRK04841 transcriptional regul 95.5 0.12 2.5E-06 54.1 10.9 45 174-218 120-164 (903)
340 PRK14965 DNA polymerase III su 95.4 0.065 1.4E-06 52.3 8.3 40 173-213 117-156 (576)
341 TIGR02525 plasmid_TraJ plasmid 95.4 0.042 9E-07 50.2 6.5 38 69-107 148-185 (372)
342 PF01695 IstB_IS21: IstB-like 95.4 0.028 6E-07 45.7 4.8 47 67-117 44-90 (178)
343 PRK08451 DNA polymerase III su 95.4 0.093 2E-06 50.2 8.9 39 174-213 116-154 (535)
344 PRK14963 DNA polymerase III su 95.4 0.1 2.3E-06 49.8 9.3 22 73-95 39-60 (504)
345 COG1110 Reverse gyrase [DNA re 95.4 0.061 1.3E-06 54.0 7.8 73 259-331 112-190 (1187)
346 PRK12727 flagellar biosynthesi 95.4 0.13 2.7E-06 48.9 9.5 24 69-92 349-372 (559)
347 PF05729 NACHT: NACHT domain 95.4 0.14 3.1E-06 40.8 9.0 22 73-94 3-24 (166)
348 TIGR03015 pepcterm_ATPase puta 95.3 0.11 2.5E-06 45.4 9.0 34 56-89 24-62 (269)
349 cd01121 Sms Sms (bacterial rad 95.3 0.12 2.7E-06 47.3 9.2 52 70-125 82-133 (372)
350 PRK05973 replicative DNA helic 95.3 0.056 1.2E-06 45.9 6.5 85 36-125 21-115 (237)
351 PRK14955 DNA polymerase III su 95.3 0.16 3.5E-06 47.3 10.1 40 173-213 125-164 (397)
352 PRK09112 DNA polymerase III su 95.3 0.07 1.5E-06 48.5 7.5 42 173-215 139-180 (351)
353 PHA00012 I assembly protein 95.3 0.3 6.5E-06 43.1 10.9 26 73-98 4-29 (361)
354 PRK14959 DNA polymerase III su 95.3 0.095 2.1E-06 50.9 8.7 21 71-91 39-59 (624)
355 TIGR03499 FlhF flagellar biosy 95.3 0.056 1.2E-06 47.6 6.6 24 71-94 195-218 (282)
356 KOG0058 Peptide exporter, ABC 95.2 0.056 1.2E-06 52.4 6.8 146 67-215 491-661 (716)
357 PRK07471 DNA polymerase III su 95.2 0.21 4.5E-06 45.8 10.1 43 173-216 139-181 (365)
358 cd00561 CobA_CobO_BtuR ATP:cor 95.2 0.45 9.8E-06 37.6 10.7 52 173-224 93-146 (159)
359 TIGR00643 recG ATP-dependent D 95.1 0.14 2.9E-06 50.9 9.6 77 272-348 284-365 (630)
360 PHA00729 NTP-binding motif con 95.1 0.29 6.3E-06 41.1 10.0 75 152-226 59-138 (226)
361 cd03115 SRP The signal recogni 95.1 0.67 1.4E-05 37.5 12.2 20 73-92 3-22 (173)
362 cd00984 DnaB_C DnaB helicase C 95.1 0.15 3.3E-06 43.9 8.8 40 68-109 11-50 (242)
363 PRK05896 DNA polymerase III su 95.1 0.096 2.1E-06 50.6 8.0 39 174-213 118-156 (605)
364 TIGR00595 priA primosomal prot 95.1 0.16 3.6E-06 48.7 9.7 76 272-348 25-101 (505)
365 PRK05986 cob(I)alamin adenolsy 95.1 0.69 1.5E-05 37.7 11.7 143 68-223 20-165 (191)
366 KOG0991 Replication factor C, 95.0 0.049 1.1E-06 45.2 4.9 39 173-212 111-149 (333)
367 PRK13851 type IV secretion sys 95.0 0.053 1.1E-06 49.0 5.7 43 67-113 159-201 (344)
368 PF03237 Terminase_6: Terminas 95.0 0.47 1E-05 43.7 12.3 146 74-231 1-154 (384)
369 PRK06620 hypothetical protein; 94.9 0.053 1.1E-06 45.6 5.3 18 71-88 45-62 (214)
370 TIGR02533 type_II_gspE general 94.9 0.063 1.4E-06 51.1 6.4 39 57-96 227-267 (486)
371 TIGR02524 dot_icm_DotB Dot/Icm 94.9 0.058 1.3E-06 49.1 5.9 27 69-96 133-159 (358)
372 KOG0738 AAA+-type ATPase [Post 94.9 0.08 1.7E-06 47.4 6.4 80 31-117 181-285 (491)
373 PF02456 Adeno_IVa2: Adenoviru 94.9 0.081 1.7E-06 45.9 6.2 41 73-114 90-130 (369)
374 PRK04328 hypothetical protein; 94.9 0.24 5.1E-06 42.8 9.3 53 69-125 22-74 (249)
375 PRK05563 DNA polymerase III su 94.8 0.15 3.1E-06 49.7 8.7 20 72-91 40-59 (559)
376 PRK12726 flagellar biosynthesi 94.8 0.33 7.1E-06 44.2 10.2 24 70-93 206-229 (407)
377 PRK10436 hypothetical protein; 94.8 0.085 1.8E-06 49.7 6.8 39 57-96 203-243 (462)
378 PF02572 CobA_CobO_BtuR: ATP:c 94.8 0.89 1.9E-05 36.5 11.5 140 73-224 6-147 (172)
379 COG1198 PriA Primosomal protei 94.8 0.18 4E-06 49.9 9.2 95 252-347 223-320 (730)
380 PF01443 Viral_helicase1: Vira 94.7 0.012 2.7E-07 50.3 0.9 16 73-88 1-16 (234)
381 TIGR01425 SRP54_euk signal rec 94.7 0.63 1.4E-05 43.3 12.0 34 73-109 103-136 (429)
382 TIGR00064 ftsY signal recognit 94.7 0.38 8.2E-06 42.1 10.1 34 72-108 74-107 (272)
383 TIGR02868 CydC thiol reductant 94.6 0.05 1.1E-06 52.9 5.1 21 67-87 358-378 (529)
384 PRK14954 DNA polymerase III su 94.6 0.28 6E-06 48.1 10.0 40 173-213 125-164 (620)
385 PRK07940 DNA polymerase III su 94.6 0.53 1.1E-05 43.6 11.3 43 174-218 116-158 (394)
386 PF05970 PIF1: PIF1-like helic 94.6 0.091 2E-06 48.3 6.4 60 55-117 1-66 (364)
387 cd01130 VirB11-like_ATPase Typ 94.6 0.087 1.9E-06 43.3 5.7 40 55-95 9-49 (186)
388 TIGR02397 dnaX_nterm DNA polym 94.6 0.23 4.9E-06 45.6 9.0 18 72-89 38-55 (355)
389 PRK10867 signal recognition pa 94.5 0.26 5.7E-06 46.0 9.1 22 73-94 103-124 (433)
390 PRK12724 flagellar biosynthesi 94.5 0.51 1.1E-05 43.6 10.7 22 73-94 226-247 (432)
391 TIGR00767 rho transcription te 94.5 0.18 3.9E-06 46.1 7.7 31 67-98 165-195 (415)
392 COG0210 UvrD Superfamily I DNA 94.4 0.098 2.1E-06 52.4 6.8 70 55-126 2-72 (655)
393 TIGR02538 type_IV_pilB type IV 94.4 0.11 2.5E-06 50.5 7.0 39 57-96 301-341 (564)
394 PRK14950 DNA polymerase III su 94.4 0.2 4.4E-06 49.1 8.6 20 72-91 40-59 (585)
395 TIGR00708 cobA cob(I)alamin ad 94.4 0.38 8.3E-06 38.6 8.6 52 173-224 95-148 (173)
396 PRK06647 DNA polymerase III su 94.4 0.29 6.3E-06 47.6 9.5 19 72-90 40-58 (563)
397 PRK14873 primosome assembly pr 94.4 0.36 7.8E-06 47.8 10.2 91 258-349 172-266 (665)
398 KOG1132 Helicase of the DEAD s 94.3 1.2 2.6E-05 44.4 13.3 106 273-379 562-722 (945)
399 PF03266 NTPase_1: NTPase; In 94.3 0.04 8.8E-07 44.2 2.9 28 174-201 94-123 (168)
400 TIGR00580 mfd transcription-re 94.2 0.31 6.7E-06 50.3 9.7 76 272-347 500-580 (926)
401 COG1132 MdlB ABC-type multidru 94.2 0.12 2.7E-06 50.7 6.8 22 67-88 352-373 (567)
402 PRK13342 recombination factor 94.2 0.32 7E-06 45.6 9.2 19 71-89 37-55 (413)
403 PRK13341 recombination factor 94.2 0.21 4.6E-06 49.9 8.3 19 71-89 53-71 (725)
404 PRK06904 replicative DNA helic 94.1 0.52 1.1E-05 44.8 10.5 116 69-189 220-348 (472)
405 PRK14953 DNA polymerase III su 94.1 0.44 9.4E-06 45.5 10.0 17 73-89 41-57 (486)
406 PHA00350 putative assembly pro 94.1 0.27 5.9E-06 45.1 8.2 26 73-98 4-30 (399)
407 PF03969 AFG1_ATPase: AFG1-lik 94.0 0.71 1.5E-05 42.2 10.7 19 70-88 62-80 (362)
408 PF10593 Z1: Z1 domain; Inter 94.0 0.29 6.2E-06 41.8 7.6 94 287-386 102-200 (239)
409 TIGR03689 pup_AAA proteasome A 94.0 0.44 9.6E-06 45.5 9.5 18 70-87 216-233 (512)
410 cd01129 PulE-GspE PulE/GspE Th 94.0 0.14 3E-06 44.7 5.8 38 57-95 65-104 (264)
411 TIGR00959 ffh signal recogniti 93.9 0.64 1.4E-05 43.5 10.3 21 73-93 102-122 (428)
412 PRK13900 type IV secretion sys 93.8 0.095 2.1E-06 47.2 4.7 42 67-112 157-198 (332)
413 PLN03187 meiotic recombination 93.8 0.33 7.2E-06 43.9 8.1 51 5-55 4-54 (344)
414 COG2109 BtuR ATP:corrinoid ade 93.8 0.96 2.1E-05 36.5 9.6 140 73-224 31-173 (198)
415 TIGR02655 circ_KaiC circadian 93.7 0.56 1.2E-05 45.0 9.9 60 62-125 250-314 (484)
416 PRK11034 clpA ATP-dependent Cl 93.7 0.87 1.9E-05 46.0 11.5 20 70-89 207-226 (758)
417 PRK13764 ATPase; Provisional 93.7 0.14 3.1E-06 49.6 5.8 27 69-96 256-282 (602)
418 TIGR00635 ruvB Holliday juncti 93.6 0.15 3.3E-06 45.6 5.7 18 71-88 31-48 (305)
419 PRK07399 DNA polymerase III su 93.6 0.65 1.4E-05 41.6 9.5 59 154-215 104-162 (314)
420 COG1074 RecB ATP-dependent exo 93.5 0.12 2.6E-06 54.8 5.6 55 69-123 15-71 (1139)
421 PRK08058 DNA polymerase III su 93.5 0.99 2.1E-05 40.8 10.8 41 173-214 108-148 (329)
422 PRK14948 DNA polymerase III su 93.5 0.35 7.7E-06 47.6 8.4 21 71-91 39-59 (620)
423 KOG2228 Origin recognition com 93.5 1.4 3.1E-05 39.0 10.9 56 161-216 123-181 (408)
424 COG1219 ClpX ATP-dependent pro 93.5 0.046 1E-06 47.6 2.0 56 33-88 44-115 (408)
425 KOG0744 AAA+-type ATPase [Post 93.4 0.23 5E-06 43.5 6.1 66 72-138 179-258 (423)
426 COG1200 RecG RecG-like helicas 93.4 0.66 1.4E-05 45.0 9.6 85 262-346 301-390 (677)
427 TIGR03819 heli_sec_ATPase heli 93.4 0.27 5.9E-06 44.5 6.8 62 46-113 155-217 (340)
428 KOG0739 AAA+-type ATPase [Post 93.3 2.3 4.9E-05 37.1 11.6 123 64-232 155-294 (439)
429 PF00437 T2SE: Type II/IV secr 93.2 0.13 2.7E-06 45.2 4.4 49 61-112 117-166 (270)
430 KOG2028 ATPase related to the 93.2 0.54 1.2E-05 42.0 8.0 48 71-121 163-210 (554)
431 PF06733 DEAD_2: DEAD_2; Inte 93.2 0.063 1.4E-06 43.6 2.3 45 146-190 114-160 (174)
432 TIGR03600 phage_DnaB phage rep 93.1 0.67 1.5E-05 43.6 9.4 118 67-189 191-319 (421)
433 PRK06305 DNA polymerase III su 93.1 0.96 2.1E-05 42.9 10.3 39 174-213 120-158 (451)
434 TIGR02012 tigrfam_recA protein 93.1 0.19 4E-06 44.9 5.3 43 70-115 55-97 (321)
435 cd01128 rho_factor Transcripti 93.1 0.24 5.3E-06 42.6 5.8 30 66-96 12-41 (249)
436 TIGR02639 ClpA ATP-dependent C 93.0 1.2 2.5E-05 45.3 11.4 20 70-89 203-222 (731)
437 PHA03372 DNA packaging termina 93.0 0.33 7.1E-06 46.5 6.9 124 71-215 203-336 (668)
438 PRK10689 transcription-repair 92.9 0.73 1.6E-05 48.8 10.1 76 271-346 648-728 (1147)
439 PRK10865 protein disaggregatio 92.9 0.75 1.6E-05 47.4 10.0 19 71-89 200-218 (857)
440 KOG1807 Helicases [Replication 92.9 0.2 4.4E-06 48.8 5.4 68 55-122 378-448 (1025)
441 PF01637 Arch_ATPase: Archaeal 92.9 0.13 2.8E-06 43.7 4.0 16 71-86 21-36 (234)
442 TIGR02784 addA_alphas double-s 92.8 0.24 5.1E-06 53.0 6.5 99 70-168 10-124 (1141)
443 PRK08506 replicative DNA helic 92.8 0.74 1.6E-05 43.9 9.2 114 70-189 192-316 (472)
444 PRK09376 rho transcription ter 92.8 0.34 7.4E-06 44.2 6.5 55 67-123 166-220 (416)
445 TIGR00416 sms DNA repair prote 92.7 0.62 1.3E-05 44.1 8.5 52 70-125 94-145 (454)
446 PRK08840 replicative DNA helic 92.7 1.1 2.4E-05 42.5 10.2 117 67-188 214-342 (464)
447 PRK05800 cobU adenosylcobinami 92.7 0.48 1E-05 38.2 6.8 47 72-124 3-49 (170)
448 COG0467 RAD55 RecA-superfamily 92.7 0.21 4.4E-06 43.6 5.0 54 68-125 21-74 (260)
449 COG1618 Predicted nucleotide k 92.6 0.16 3.5E-06 39.7 3.7 114 71-202 6-129 (179)
450 TIGR03346 chaperone_ClpB ATP-d 92.6 1 2.2E-05 46.6 10.5 19 71-89 195-213 (852)
451 PRK07004 replicative DNA helic 92.6 0.62 1.3E-05 44.2 8.3 116 69-189 212-338 (460)
452 PRK08006 replicative DNA helic 92.6 1.3 2.9E-05 42.1 10.5 115 69-188 223-349 (471)
453 cd00983 recA RecA is a bacter 92.6 0.19 4E-06 44.9 4.5 44 70-116 55-98 (325)
454 COG2812 DnaX DNA polymerase II 92.6 0.15 3.2E-06 48.3 4.1 39 173-215 117-156 (515)
455 TIGR01243 CDC48 AAA family ATP 92.5 0.54 1.2E-05 47.7 8.4 19 69-87 211-229 (733)
456 COG0630 VirB11 Type IV secreto 92.5 0.23 5E-06 44.4 5.1 54 55-112 127-181 (312)
457 cd00544 CobU Adenosylcobinamid 92.5 0.74 1.6E-05 37.0 7.5 46 73-124 2-47 (169)
458 cd00268 DEADc DEAD-box helicas 92.5 4.6 0.0001 33.4 12.8 75 271-349 68-152 (203)
459 KOG0741 AAA+-type ATPase [Post 92.4 0.86 1.9E-05 42.9 8.6 45 173-217 596-649 (744)
460 cd01131 PilT Pilus retraction 92.4 0.21 4.5E-06 41.5 4.5 35 73-109 4-38 (198)
461 KOG0701 dsRNA-specific nucleas 92.4 0.066 1.4E-06 56.9 1.8 93 274-366 294-398 (1606)
462 PRK07414 cob(I)yrinic acid a,c 92.4 0.96 2.1E-05 36.4 7.9 140 72-223 23-165 (178)
463 PF12846 AAA_10: AAA-like doma 92.4 0.17 3.8E-06 45.0 4.3 40 70-112 1-40 (304)
464 TIGR02858 spore_III_AA stage I 92.3 2.6 5.6E-05 36.8 11.2 16 71-86 112-127 (270)
465 PF03796 DnaB_C: DnaB-like hel 92.1 0.43 9.4E-06 41.5 6.3 117 69-190 18-145 (259)
466 TIGR01243 CDC48 AAA family ATP 92.1 0.43 9.3E-06 48.4 7.1 19 70-88 487-505 (733)
467 KOG0732 AAA+-type ATPase conta 92.1 0.78 1.7E-05 47.1 8.6 151 27-219 256-417 (1080)
468 PF04665 Pox_A32: Poxvirus A32 92.1 0.23 5E-06 42.2 4.3 36 71-109 14-49 (241)
469 PRK09354 recA recombinase A; P 92.0 0.28 6.1E-06 44.2 5.0 42 71-115 61-102 (349)
470 COG0552 FtsY Signal recognitio 92.0 0.83 1.8E-05 40.5 7.7 131 73-227 142-280 (340)
471 TIGR00614 recQ_fam ATP-depende 92.0 2.8 6E-05 40.2 12.1 77 273-349 52-136 (470)
472 PRK09087 hypothetical protein; 92.0 0.42 9.2E-06 40.5 5.9 18 71-88 45-62 (226)
473 PRK14970 DNA polymerase III su 92.0 1.4 3E-05 40.7 9.8 19 71-89 40-58 (367)
474 PF01580 FtsK_SpoIIIE: FtsK/Sp 91.9 0.26 5.5E-06 41.2 4.5 44 67-111 35-79 (205)
475 cd01126 TraG_VirD4 The TraG/Tr 91.9 0.17 3.8E-06 46.9 3.7 48 72-124 1-48 (384)
476 KOG0741 AAA+-type ATPase [Post 91.9 0.49 1.1E-05 44.4 6.4 18 71-88 257-274 (744)
477 COG1197 Mfd Transcription-repa 91.9 1.3 2.8E-05 45.9 9.9 77 270-346 641-722 (1139)
478 KOG0740 AAA+-type ATPase [Post 91.8 1 2.2E-05 41.6 8.4 79 176-270 246-336 (428)
479 COG1066 Sms Predicted ATP-depe 91.8 0.97 2.1E-05 41.2 8.0 98 63-190 81-183 (456)
480 TIGR02640 gas_vesic_GvpN gas v 91.7 0.18 3.8E-06 44.0 3.4 28 62-89 13-40 (262)
481 PF13481 AAA_25: AAA domain; P 91.7 0.42 9.2E-06 39.4 5.5 57 69-126 31-94 (193)
482 PF13555 AAA_29: P-loop contai 91.6 0.16 3.4E-06 32.8 2.2 18 70-87 23-40 (62)
483 PRK14701 reverse gyrase; Provi 91.6 1.6 3.5E-05 47.9 11.0 61 271-331 121-187 (1638)
484 TIGR02788 VirB11 P-type DNA tr 91.6 0.39 8.4E-06 43.0 5.5 28 67-95 141-168 (308)
485 PRK07133 DNA polymerase III su 91.5 0.9 2E-05 45.2 8.3 18 73-90 43-60 (725)
486 TIGR01420 pilT_fam pilus retra 91.5 0.28 6.1E-06 44.6 4.6 41 70-112 122-162 (343)
487 KOG0730 AAA+-type ATPase [Post 91.5 5 0.00011 39.1 12.7 184 28-274 426-622 (693)
488 PRK09165 replicative DNA helic 91.5 0.66 1.4E-05 44.5 7.2 115 70-188 217-354 (497)
489 PRK14971 DNA polymerase III su 91.3 1.4 3.1E-05 43.4 9.4 41 173-215 119-159 (614)
490 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.3 1.2 2.6E-05 34.7 7.5 30 174-203 87-116 (144)
491 PRK08760 replicative DNA helic 91.2 1.5 3.2E-05 41.9 9.2 113 70-188 229-352 (476)
492 TIGR02203 MsbA_lipidA lipid A 91.2 0.27 5.9E-06 48.4 4.6 42 174-215 486-527 (571)
493 PF02534 T4SS-DNA_transf: Type 91.2 0.24 5.2E-06 47.4 4.0 50 71-125 45-94 (469)
494 cd03247 ABCC_cytochrome_bd The 91.1 1.1 2.5E-05 36.3 7.4 41 174-214 115-155 (178)
495 PF06309 Torsin: Torsin; Inte 91.1 1.3 2.8E-05 33.4 6.9 51 73-123 56-111 (127)
496 TIGR00665 DnaB replicative DNA 91.1 2.1 4.6E-05 40.5 10.3 112 70-188 195-318 (434)
497 KOG0344 ATP-dependent RNA heli 91.1 4.8 0.0001 38.4 12.0 102 75-186 362-467 (593)
498 KOG1806 DEAD box containing he 91.1 0.44 9.4E-06 48.1 5.6 69 55-124 738-806 (1320)
499 KOG1513 Nuclear helicase MOP-3 91.1 0.17 3.6E-06 49.6 2.7 64 315-378 850-922 (1300)
500 COG5008 PilU Tfp pilus assembl 91.1 0.24 5.2E-06 42.1 3.3 18 71-88 128-145 (375)
No 1
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-70 Score=443.80 Aligned_cols=397 Identities=80% Similarity=1.225 Sum_probs=384.9
Q ss_pred cCCCCCCCCCcceeeccCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHH
Q 015454 10 RGGGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~ 89 (406)
|..+...+.+....+.++..+..++|+++++.+++++...+-||..|+..|++|++++++|++++.++..|+|||.+|.+
T Consensus 4 r~~~~~~~~~~~~feTs~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si 83 (400)
T KOG0328|consen 4 RELFTMEDMDTVEFETSEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSI 83 (400)
T ss_pred hhhcccccccceeEeeccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEe
Confidence 44456678888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHcc
Q 015454 90 TVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK 169 (406)
Q Consensus 90 ~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~ 169 (406)
.++..+.-+.+..++++++||++|+.|..+.+..++...++....+.||.+..++++.+..+.+++.+||++..+.++..
T Consensus 84 ~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~ 163 (400)
T KOG0328|consen 84 SVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRR 163 (400)
T ss_pred eeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhc
Confidence 99988887777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEE
Q 015454 170 TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQF 249 (406)
Q Consensus 170 ~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (406)
.+....++++|+||++.+++.++..++..+++.+|++.|++++|||++.+..++...+..+|+.+.+.+++.+.++++++
T Consensus 164 ~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf 243 (400)
T KOG0328|consen 164 SLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQF 243 (400)
T ss_pred cccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEc
Q 015454 250 FVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT 329 (406)
Q Consensus 250 ~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t 329 (406)
+..+..+++|.+.|+.++......+++||||++..++.+.+.+++.++.+...||+|.+++|+.++++|++|+.+|||+|
T Consensus 244 ~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitT 323 (400)
T KOG0328|consen 244 FVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITT 323 (400)
T ss_pred eeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEe
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccccC
Q 015454 330 DVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 406 (406)
Q Consensus 330 ~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (406)
++.++|+|+|.++.||.|+.|.+...|+||+||.||.|++|.++-|+..+|.+.+++++++|...++++|.+++|++
T Consensus 324 DVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~i 400 (400)
T KOG0328|consen 324 DVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADLI 400 (400)
T ss_pred chhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-64 Score=422.22 Aligned_cols=376 Identities=32% Similarity=0.567 Sum_probs=356.8
Q ss_pred ccCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeE
Q 015454 25 TTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA 104 (406)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~ 104 (406)
..+..+...+|.++++++.+.+++...++..|++.|.+++|.++.|+++|..|.||||||.+|++|+++.+...++...+
T Consensus 53 ~~~~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~ 132 (476)
T KOG0330|consen 53 EMQTDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFA 132 (476)
T ss_pred hhhhhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceE
Confidence 34557788999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHH-ccCCCcCCcceeecch
Q 015454 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK-RKTLRTRAIKLLVLDE 183 (406)
Q Consensus 105 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~-~~~~~~~~~~~vV~DE 183 (406)
+|++||++|+.|..+.+..++...++.+..+.||.+...+...+...++|+|+||++|++++. ...+.+..++++|+||
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 999999999999999999999999999999999999999988889999999999999999998 4678889999999999
Q ss_pred hhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHH
Q 015454 184 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTL 263 (406)
Q Consensus 184 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 263 (406)
|+.+++..|...+..+++.+|.+.|.+++|||++..........+.+|..+.+.......+.+.+.|..++... |...|
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~-K~~yL 291 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKD-KDTYL 291 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccc-cchhH
Confidence 99999999999999999999999999999999999999999999999999998888888888888888887765 88889
Q ss_pred HHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCE
Q 015454 264 CDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSL 343 (406)
Q Consensus 264 ~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~ 343 (406)
..+++......+||||++...++.++-.|...|+.+..+||.|++..|.-.++.|++|..+||+||+++++|+|+|.+++
T Consensus 292 V~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~ 371 (476)
T KOG0330|consen 292 VYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDV 371 (476)
T ss_pred HHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceE
Confidence 99999888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCcc
Q 015454 344 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMN 401 (406)
Q Consensus 344 vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (406)
||.|+.|.+..+|+||+||++|.|+.|.++.+++..|.+.+.+|+..++....+.+.+
T Consensus 372 VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~ 429 (476)
T KOG0330|consen 372 VVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVD 429 (476)
T ss_pred EEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcc
Confidence 9999999999999999999999999999999999999999999999999888775543
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-62 Score=441.36 Aligned_cols=370 Identities=36% Similarity=0.640 Sum_probs=343.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc------CCCceeEEEE
Q 015454 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT------SSREVQALIL 107 (406)
Q Consensus 34 ~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~------~~~~~~~lil 107 (406)
.|..+++++....+|...||..|+|+|.+.|+.++.|++++..+.||||||++|++|++.++.. ...++.+|++
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 7889999999999999999999999999999999999999999999999999999999988865 3457889999
Q ss_pred cCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHH
Q 015454 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (406)
Q Consensus 108 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~ 187 (406)
+|||+|+.|+.+.+..++....+...+++||.....+.+.+.++.+|+|+||++|.++++.....++.+.++|+||||.+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcHHHHHHHHHhC-CCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCc--cccCCceEEEEEecccccHHHHHH
Q 015454 188 LSRGFKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE--LTLEGIKQFFVAVEREEWKFDTLC 264 (406)
Q Consensus 188 ~~~~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ 264 (406)
++.+|..+++.+++.+ ++..|.++.|||++.+...+...++.++..+..-... ....++.+....++ ...+...|.
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~ 330 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLG 330 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHH
Confidence 9999999999999999 4455799999999999999999999998877765442 44466677777777 445777788
Q ss_pred HHHhhcC---CcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCC
Q 015454 265 DLYDTLT---ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQV 341 (406)
Q Consensus 265 ~~~~~~~---~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 341 (406)
.+++.+. .+|+||||++++.|+.+...|+..++++..+||+.++.+|+.+++.|++|+..|||||+++++|+|+|++
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 7777664 4699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccc
Q 015454 342 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVAD 404 (406)
Q Consensus 342 ~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (406)
++||.+++|.++.+|+||+||+||.|+.|.++.|+...+......+.+.+.+..+.+|+.+.+
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~ 473 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLE 473 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988754
No 4
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3e-61 Score=448.33 Aligned_cols=372 Identities=32% Similarity=0.472 Sum_probs=331.5
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC-------CCcee
Q 015454 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-------SREVQ 103 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~-------~~~~~ 103 (406)
+..+|+++++++++.++|...||..|+++|.++++.++.|+|++++||||||||++|++|++..+... ..+.+
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 44789999999999999999999999999999999999999999999999999999999999877432 23468
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecch
Q 015454 104 ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDE 183 (406)
Q Consensus 104 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE 183 (406)
+||++|+++|+.|+.+.+..+....++.+..++|+.....+...+..+++|+|+||++|.+++....+.+.+++++|+||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999999999999988888999999999888877777778899999999999999988888899999999999
Q ss_pred hhHHhccCcHHHHHHHHHhCCC--CceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHH
Q 015454 184 SDEMLSRGFKDQIYDVYRYLPP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFD 261 (406)
Q Consensus 184 ~h~~~~~~~~~~~~~~~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (406)
||.+.+.++...+..++..++. ..+.+++|||++..........+.++..+...........+.+.+... ....+..
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~-~~~~k~~ 244 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP-SNEEKMR 244 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC-CHHHHHH
Confidence 9999999999999888888874 446789999999998888888888887777665555555555544433 3345788
Q ss_pred HHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCC
Q 015454 262 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQV 341 (406)
Q Consensus 262 ~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 341 (406)
.+..+++.....++||||++++.++.+.+.|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++
T Consensus 245 ~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v 324 (423)
T PRK04837 245 LLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAV 324 (423)
T ss_pred HHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcccc
Confidence 88888887777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCcccc
Q 015454 342 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVA 403 (406)
Q Consensus 342 ~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (406)
++||++++|.+...|+||+||+||.|+.|.+++|+.+.+...++.+++++...++..+....
T Consensus 325 ~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 386 (423)
T PRK04837 325 THVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYDSD 386 (423)
T ss_pred CEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCChh
Confidence 99999999999999999999999999999999999999999999999999888766554443
No 5
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.5e-61 Score=456.41 Aligned_cols=379 Identities=32% Similarity=0.529 Sum_probs=335.9
Q ss_pred cCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC-----CC
Q 015454 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-----SR 100 (406)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~-----~~ 100 (406)
...+.+..+|+++++++.+.++|...||..|+++|.++|+.+++|+++++++|||||||++|++|++..+... ..
T Consensus 123 ~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~ 202 (545)
T PTZ00110 123 ENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGD 202 (545)
T ss_pred CCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCC
Confidence 3456778899999999999999999999999999999999999999999999999999999999998776432 23
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceee
Q 015454 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (406)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV 180 (406)
++.+||++||++|+.|+.+.+.+++....+....++++.....+...+..+++|+|+||++|.+++......+..+++||
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lV 282 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLV 282 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEE
Confidence 56899999999999999999999998888888899999888888788888899999999999999998888889999999
Q ss_pred cchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCC-CCeEEEecCCc-cccCCceEEEEEeccccc
Q 015454 181 LDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMT-DPVKILVKRDE-LTLEGIKQFFVAVEREEW 258 (406)
Q Consensus 181 ~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 258 (406)
+||||.+.+.+|...+..+...+++..|++++|||++.....+...++. .+..+...... .....+.+.+..+.. ..
T Consensus 283 iDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~-~~ 361 (545)
T PTZ00110 283 LDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE-HE 361 (545)
T ss_pred eehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec-hh
Confidence 9999999999999999999999999999999999999988887777664 45555543332 222444555544443 33
Q ss_pred HHHHHHHHHhhc--CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCC
Q 015454 259 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 336 (406)
Q Consensus 259 ~~~~l~~~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 336 (406)
+...+..++... ...++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 362 k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 362 KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGL 441 (545)
T ss_pred HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCC
Confidence 667777777665 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCcccccc
Q 015454 337 DVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADL 405 (406)
Q Consensus 337 d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (406)
|+|++++||+++.|.+...|+||+||+||.|+.|.+++|+++++...+..+.+.+.+..+++|++|.++
T Consensus 442 Di~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~ 510 (545)
T PTZ00110 442 DVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKL 510 (545)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988654
No 6
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.7e-60 Score=442.20 Aligned_cols=363 Identities=37% Similarity=0.625 Sum_probs=328.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCC------CceeEEEE
Q 015454 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS------REVQALIL 107 (406)
Q Consensus 34 ~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~------~~~~~lil 107 (406)
+|+++++++++.++|.+.||..|+++|.++++.++.++|+++++|||||||++|++|+++.+.... ...++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 689999999999999999999999999999999999999999999999999999999998875322 23479999
Q ss_pred cCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHH
Q 015454 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (406)
Q Consensus 108 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~ 187 (406)
+||++|+.|+.+.+..+....++....++++.+...+...+..+++|+|+||++|++++......++++++||+||||.+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999888888888999999888877777788999999999999998888888899999999999999
Q ss_pred hccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHH
Q 015454 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267 (406)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 267 (406)
.+.++...+..++..++...|.+++|||+++........++.++..+...........+.+++..++. ..+.+.+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK-KRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH-HHHHHHHHHHH
Confidence 99999889999999999999999999999998888888888888777666555555566666555544 34667777777
Q ss_pred hhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEe
Q 015454 268 DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINY 347 (406)
Q Consensus 268 ~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~ 347 (406)
......++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++
T Consensus 241 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~ 320 (456)
T PRK10590 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320 (456)
T ss_pred HcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEe
Confidence 77666799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHcccccc
Q 015454 348 DLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDE 397 (406)
Q Consensus 348 ~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
+.|.+..+|+||+||+||.|..|.+++++..+|...++.+++.+...++.
T Consensus 321 ~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~ 370 (456)
T PRK10590 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPR 370 (456)
T ss_pred CCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999877743
No 7
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=7.2e-60 Score=443.74 Aligned_cols=363 Identities=38% Similarity=0.652 Sum_probs=332.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 33 ~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
.+|+++++++.+.+++.+.||..|+|+|.++++.++.|++++++||||||||++|++|+++.+.......++||++||++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 57999999999999999999999999999999999999999999999999999999999999876555668999999999
Q ss_pred HHHHHHHHHHHhccCc-ceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC
Q 015454 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (406)
Q Consensus 113 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~ 191 (406)
|+.|+.+.++.+.... ++.+..++|+.+...+...+..+++|+|+||+++..++.+....+.++++||+||||.+.+.+
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g 163 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG 163 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC
Confidence 9999999999887543 688888999999888888888889999999999999999888888999999999999999999
Q ss_pred cHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcC
Q 015454 192 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 271 (406)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 271 (406)
+...+..++..+++..|++++|||+++....+...++.++..+...... ....+.+.+..++... +...+..++....
T Consensus 164 ~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~ 241 (460)
T PRK11776 164 FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDE-RLPALQRLLLHHQ 241 (460)
T ss_pred cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHH-HHHHHHHHHHhcC
Confidence 9999999999999999999999999999888888888888877665543 3444666666666555 8888999998887
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPN 351 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~ 351 (406)
..++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||.++.|.
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~ 321 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELAR 321 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHcccccc
Q 015454 352 NRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDE 397 (406)
Q Consensus 352 s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
+...|+||+||+||.|+.|.+++++.+.|...+..+++.+...++.
T Consensus 322 ~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 322 DPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred CHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 9999999999999999999999999999999999999998876654
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=6.5e-60 Score=446.75 Aligned_cols=376 Identities=31% Similarity=0.540 Sum_probs=333.0
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc-------CC
Q 015454 27 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-------SS 99 (406)
Q Consensus 27 ~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~-------~~ 99 (406)
..+++..+|+++++++.+.+.|...||..|+|+|.++|+.++.|+++++++|||||||++|++|++..+.. ..
T Consensus 115 ~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~ 194 (518)
T PLN00206 115 AVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQ 194 (518)
T ss_pred CCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccccccc
Confidence 45678899999999999999999999999999999999999999999999999999999999999876532 22
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCccee
Q 015454 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (406)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~v 179 (406)
.+.++||++||++|+.|+.+.++.+....++....+.||.....+...+..+++|+|+||++|..++......+.++++|
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~l 274 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVL 274 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEE
Confidence 46789999999999999999999988888888888889888887777788889999999999999999888889999999
Q ss_pred ecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccH
Q 015454 180 VLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK 259 (406)
Q Consensus 180 V~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (406)
|+||||.+.+.+|...+..+...++ .+|++++|||+++....+...+..++..+...........+.+....+.... +
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~-k 352 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQ-K 352 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchh-H
Confidence 9999999999999999988888874 6799999999999988888888888777766555444455555555554433 5
Q ss_pred HHHHHHHHhhcC--CcceEEEecchhhHHHHHHHHhc-CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCC
Q 015454 260 FDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMRG-YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 336 (406)
Q Consensus 260 ~~~l~~~~~~~~--~~k~lif~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 336 (406)
...+..++.... ..++||||+++..++.+++.|.. .++.+..+||+++..+|..+++.|++|+.+|||||+++++|+
T Consensus 353 ~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGi 432 (518)
T PLN00206 353 KQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGV 432 (518)
T ss_pred HHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccC
Confidence 556666665433 25899999999999999999975 688999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccc
Q 015454 337 DVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVAD 404 (406)
Q Consensus 337 d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (406)
|+|++++||+++.|.+..+|+||+||+||.|+.|.+++|+.+++...+..+.+.++.....+|++|.+
T Consensus 433 Dip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 500 (518)
T PLN00206 433 DLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELAN 500 (518)
T ss_pred CcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999998865
No 9
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-59 Score=442.06 Aligned_cols=364 Identities=44% Similarity=0.734 Sum_probs=341.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc-CCCcee-EEEEcCc
Q 015454 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQ-ALILSPT 110 (406)
Q Consensus 33 ~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~-~~~~~~-~lil~P~ 110 (406)
..|+++++++.+.+++.+.||..|+|+|.+++|.++.|++++..|+||||||.+|.+|+++.+.. ...... +||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 77999999999999999999999999999999999999999999999999999999999999763 222222 9999999
Q ss_pred HHHHHHHHHHHHHhccCc-ceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhc
Q 015454 111 RELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (406)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~ 189 (406)
++|+.|+++.+..++... ++.+..++||.+...+...+..+++|+|+||.++++++....+.+..+.++|+|||+.+++
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 999999999999999888 7899999999999999888888899999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCcc--ccCCceEEEEEecccccHHHHHHHHH
Q 015454 190 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDEL--TLEGIKQFFVAVEREEWKFDTLCDLY 267 (406)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~ 267 (406)
.+|...+..+...+++..|.+++|||+++.+..+...++.+|..+....... ....+.+++..+.....+...|..++
T Consensus 189 ~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll 268 (513)
T COG0513 189 MGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLL 268 (513)
T ss_pred CCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998887775555 77889999999888767999999999
Q ss_pred hhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEe
Q 015454 268 DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINY 347 (406)
Q Consensus 268 ~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~ 347 (406)
+.....++||||++.+.++.++..|...|+.+..+||++++.+|.+.++.|++|+.+|||||+++++|+|+|++++||.|
T Consensus 269 ~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Viny 348 (513)
T COG0513 269 KDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINY 348 (513)
T ss_pred hcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEc
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhHhhhhhccCCCCceeEEEEeccC-cHHHHHHHHHHHccccc
Q 015454 348 DLPNNRELYIHRIGRSGRFGRKGVAINFVKND-DIKILRDIEQYYSTQID 396 (406)
Q Consensus 348 ~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 396 (406)
+.|.++..|+||+||+||.|+.|.++.|+.+. +...+..+++.+.....
T Consensus 349 D~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 349 DLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred cCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999986 88999999999876643
No 10
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.6e-59 Score=448.52 Aligned_cols=367 Identities=36% Similarity=0.605 Sum_probs=334.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcH
Q 015454 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (406)
Q Consensus 32 ~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~ 111 (406)
..+|.+++|++.+.++|...||..|+|+|.++++.++++++++++||||||||++|.+|++..+.....+.++||++||+
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 35699999999999999999999999999999999999999999999999999999999998887665667899999999
Q ss_pred HHHHHHHHHHHHhccCc-ceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhcc
Q 015454 112 ELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (406)
Q Consensus 112 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~ 190 (406)
+|+.|+++.+..+.... ++.+..++++.....+...+..+++|+|+||+++.+++....+.++++++||+||||.+++.
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~ 164 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM 164 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhc
Confidence 99999999998886543 68888899998888888888888999999999999999988888999999999999999999
Q ss_pred CcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhc
Q 015454 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (406)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (406)
++...+..++..++...|++++|||+++........++.++..+...........+.+.+..+... .+.+.+..++...
T Consensus 165 gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~-~k~~~L~~~L~~~ 243 (629)
T PRK11634 165 GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEALVRFLEAE 243 (629)
T ss_pred ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechh-hHHHHHHHHHHhc
Confidence 999999999999999999999999999998888888988888777666665566666666655544 3778888888877
Q ss_pred CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCC
Q 015454 271 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP 350 (406)
Q Consensus 271 ~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 350 (406)
...++||||+++..++.+++.|...++.+..+||++++.+|..++++|++|+++|||||+++++|+|+|++++||+++.|
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P 323 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIP 323 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCC
Q 015454 351 NNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMP 399 (406)
Q Consensus 351 ~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (406)
.+...|+||+||+||.|+.|.+++++.+.+...++.+++.++..+.+++
T Consensus 324 ~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~ 372 (629)
T PRK11634 324 MDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVE 372 (629)
T ss_pred CCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceec
Confidence 9999999999999999999999999999999999999999988887764
No 11
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.1e-59 Score=434.40 Aligned_cols=375 Identities=69% Similarity=1.103 Sum_probs=341.5
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCc
Q 015454 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~ 110 (406)
...+|+++++++.+.+++.+.||..|+++|.++++.++.++++++++|||||||++|+++++..+.....+.++||++|+
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt 105 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPT 105 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCC
Confidence 45789999999999999999999999999999999999999999999999999999999999888665567789999999
Q ss_pred HHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhcc
Q 015454 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (406)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~ 190 (406)
++|+.|+.+.+..++.........+.|+.....+......+.+|+|+||+++...+......++++++||+||+|.+.+.
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~ 185 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSR 185 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhc
Confidence 99999999999998887778888888888877777777778899999999999998887778899999999999999998
Q ss_pred CcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhc
Q 015454 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (406)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (406)
++...+..++..+++..|++++|||+++........++..+..+..........++.+++........+...+..+++..
T Consensus 186 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (401)
T PTZ00424 186 GFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETL 265 (401)
T ss_pred chHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhc
Confidence 88888888999998899999999999998888888888888777766666666777777777766666777788888777
Q ss_pred CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCC
Q 015454 271 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP 350 (406)
Q Consensus 271 ~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 350 (406)
...++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+++|||||+.+++|+|+|++++||+++.|
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p 345 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLP 345 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCcccccc
Q 015454 351 NNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADL 405 (406)
Q Consensus 351 ~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (406)
.+...|.||+||+||.|+.|.|+.++.+++.+.++.+++.+....+++++...+.
T Consensus 346 ~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 400 (401)
T PTZ00424 346 ASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEVADY 400 (401)
T ss_pred CCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcchhhc
Confidence 9999999999999999999999999999999999999999999999998876553
No 12
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.4e-59 Score=435.33 Aligned_cols=364 Identities=32% Similarity=0.551 Sum_probs=331.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc----CCCceeEEEEcC
Q 015454 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT----SSREVQALILSP 109 (406)
Q Consensus 34 ~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~----~~~~~~~lil~P 109 (406)
+|+++++++.+.+++...||..|+++|.++++.++.|+++++++|||+|||++|++|+++.+.. ...+.++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 6899999999999999999999999999999999999999999999999999999999987643 223468999999
Q ss_pred cHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhc
Q 015454 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (406)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~ 189 (406)
+++|+.|+.+.+..+....++.+..+.|+.........+..+++|+|+||++|.+++....+...++++||+||||.+.+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 99999999999999998889999999999988887777777889999999999999998888889999999999999999
Q ss_pred cCcHHHHHHHHHhCCCCceEEEEEecCCh-HHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHh
Q 015454 190 RGFKDQIYDVYRYLPPDLQVVLISATLPH-EILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (406)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 268 (406)
.++...+..+....+...|++++|||++. .+..+...++.++..+...........+.+++...+....+...+..+++
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 241 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLK 241 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHh
Confidence 99999999998888888899999999975 46666667777787777766666666777787777776778889999998
Q ss_pred hcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEec
Q 015454 269 TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYD 348 (406)
Q Consensus 269 ~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 348 (406)
.....++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++
T Consensus 242 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 242 QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEEC
Confidence 76778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHcccccc
Q 015454 349 LPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDE 397 (406)
Q Consensus 349 ~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
.|.+...|+||+||+||.|+.|.+++++...|...+..+++++.+.+..
T Consensus 322 ~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 322 MPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred CCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999998876644
No 13
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.3e-59 Score=444.18 Aligned_cols=365 Identities=34% Similarity=0.538 Sum_probs=326.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC-------CCceeEE
Q 015454 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-------SREVQAL 105 (406)
Q Consensus 33 ~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~-------~~~~~~l 105 (406)
.+|+++++++.+.++|.+.||..|+++|.++|+.+++|+|+++++|||||||++|+++++..+... ....++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 469999999999999999999999999999999999999999999999999999999999877432 1246899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHcc-CCCcCCcceeecchh
Q 015454 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDES 184 (406)
Q Consensus 106 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~-~~~~~~~~~vV~DE~ 184 (406)
|++|+++|+.|+++.+.+++...++.+..++|+.....+...+..+++|+|+||++|++++... .+.+..+++||+|||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999988899999999999988877777778999999999999988764 466788999999999
Q ss_pred hHHhccCcHHHHHHHHHhCCC--CceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHH
Q 015454 185 DEMLSRGFKDQIYDVYRYLPP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDT 262 (406)
Q Consensus 185 h~~~~~~~~~~~~~~~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (406)
|.+.+.++...+..++..++. ..|++++|||++..+......++..+..+...........+.+.+.... ...+...
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~-~~~k~~~ 247 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA-DEEKQTL 247 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecC-HHHHHHH
Confidence 999999999999999888876 6799999999999988888888888877766655555555555555443 3447778
Q ss_pred HHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCC
Q 015454 263 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVS 342 (406)
Q Consensus 263 l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 342 (406)
+..++......++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|+++
T Consensus 248 L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~ 327 (572)
T PRK04537 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVK 327 (572)
T ss_pred HHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCC
Confidence 88888877778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccC
Q 015454 343 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEM 398 (406)
Q Consensus 343 ~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (406)
+||+++.|.+...|+||+||+||.|+.|.+++|+.+.+...+.++++++...+...
T Consensus 328 ~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~ 383 (572)
T PRK04537 328 YVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVE 383 (572)
T ss_pred EEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCcc
Confidence 99999999999999999999999999999999999999999999999988776543
No 14
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.5e-58 Score=430.27 Aligned_cols=367 Identities=31% Similarity=0.548 Sum_probs=325.5
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCC-------Cc
Q 015454 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-------RE 101 (406)
Q Consensus 29 ~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~-------~~ 101 (406)
.+....|.++++++.+.++|.+.||..|+++|.++++.+++|+|+++.+|||||||++|+++++..+.... ..
T Consensus 83 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~ 162 (475)
T PRK01297 83 QEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGE 162 (475)
T ss_pred ccCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCC
Confidence 34456789999999999999999999999999999999999999999999999999999999998875432 14
Q ss_pred eeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHh-cCCCEEEechHHHHHHHHccCCCcCCcceee
Q 015454 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (406)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV 180 (406)
.++||++||++|+.|+.+.+..+....++.+..+.|+.+.......+. ..++|+|+||++|..++......++++++||
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lV 242 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMV 242 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEE
Confidence 689999999999999999999998888888989999887766655543 4589999999999998888778889999999
Q ss_pred cchhhHHhccCcHHHHHHHHHhCCC--CceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEeccccc
Q 015454 181 LDESDEMLSRGFKDQIYDVYRYLPP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEW 258 (406)
Q Consensus 181 ~DE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (406)
+||+|.+.+.++...+..+....+. ..|++++|||++.........+..++..+.............+.+...... .
T Consensus 243 iDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 321 (475)
T PRK01297 243 LDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGS-D 321 (475)
T ss_pred echHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecch-h
Confidence 9999999999988888888887754 568999999999988888888888887776666555555555555554443 3
Q ss_pred HHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCC
Q 015454 259 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDV 338 (406)
Q Consensus 259 ~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~ 338 (406)
+...+..++......++||||++++.++.+++.|...++.+..+||+++..+|.++++.|++|++++||||+++++|+|+
T Consensus 322 k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 322 KYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 77788888887777799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccc
Q 015454 339 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQID 396 (406)
Q Consensus 339 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
|++++||+++.|.+...|+||+||+||.|++|.+++|+.++|...+..+++++...++
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999999999999999999988863
No 15
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-59 Score=384.28 Aligned_cols=373 Identities=38% Similarity=0.686 Sum_probs=356.0
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcC
Q 015454 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (406)
Q Consensus 30 ~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P 109 (406)
.....|+++.|...++......||..|+|.|.+++|..+.|++++..|..|+|||-+|.+|+++.+......-++++++|
T Consensus 82 TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVP 161 (459)
T KOG0326|consen 82 TKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVP 161 (459)
T ss_pred ccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEee
Confidence 34567999999999999999999999999999999999999999999999999999999999999988888889999999
Q ss_pred cHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhc
Q 015454 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (406)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~ 189 (406)
+++|+-|......++++..++.+....||++...++-++.++.+++|+||++++++....--.++++.++|+|||+.+++
T Consensus 162 trelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs 241 (459)
T KOG0326|consen 162 TRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLS 241 (459)
T ss_pred cchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhh
Q 015454 190 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 269 (406)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (406)
..|...+..++..+|+..|+++.|||.|-....+..+.+.+|..+..- ++..+.++.++|..+.... |..-|..++.+
T Consensus 242 ~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~e~q-KvhCLntLfsk 319 (459)
T KOG0326|consen 242 VDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVEERQ-KVHCLNTLFSK 319 (459)
T ss_pred hhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeechhh-hhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999877644 5678889999998887776 88899999998
Q ss_pred cCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecC
Q 015454 270 LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL 349 (406)
Q Consensus 270 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 349 (406)
....+.+|||||...++.+++.+.+.|+.+..+|+.|.++.|++++.+|++|.++.||||+.+.+|+|++.+++||.++.
T Consensus 320 LqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDf 399 (459)
T KOG0326|consen 320 LQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDF 399 (459)
T ss_pred hcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccc
Q 015454 350 PNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVAD 404 (406)
Q Consensus 350 ~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (406)
|+++.+|+||+||.||.|..|.++.++..+|...++++++.+..+++.+|+.++.
T Consensus 400 pk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iDk 454 (459)
T KOG0326|consen 400 PKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNIDK 454 (459)
T ss_pred CCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCCc
Confidence 9999999999999999999999999999999999999999999999999988764
No 16
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.5e-57 Score=395.84 Aligned_cols=383 Identities=30% Similarity=0.506 Sum_probs=353.3
Q ss_pred cceeeccCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC-
Q 015454 20 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS- 98 (406)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~- 98 (406)
.+...-..-+.+..+|++.+++..+++.+...||..|+|.|..+++..+..+++|..+.||||||.+|++|++..+...
T Consensus 232 nis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP 311 (673)
T KOG0333|consen 232 NISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLP 311 (673)
T ss_pred eeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCC
Confidence 4444456678889999999999999999999999999999999999999999999999999999999999999877332
Q ss_pred --------CCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccC
Q 015454 99 --------SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT 170 (406)
Q Consensus 99 --------~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~ 170 (406)
..++.++++.||++|++|..++-.+++...++.+..+.||...+++-..+..+++|+|+||.+|...+.+..
T Consensus 312 ~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~ 391 (673)
T KOG0333|consen 312 PMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRY 391 (673)
T ss_pred CcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred CCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCC-------------------------ceEEEEEecCChHHHHHHH
Q 015454 171 LRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD-------------------------LQVVLISATLPHEILEMTT 225 (406)
Q Consensus 171 ~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~-------------------------~~~i~lSAT~~~~~~~~~~ 225 (406)
+-++.+.+||+||++.+.+.+|.+.+..++..+|.. .|.+.+|||+++....+..
T Consensus 392 lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar 471 (673)
T KOG0333|consen 392 LVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLAR 471 (673)
T ss_pred HHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHH
Confidence 999999999999999999999999999999888731 5889999999999999999
Q ss_pred hcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecC
Q 015454 226 KFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGD 305 (406)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~ 305 (406)
.++..|+.+.......+.+.+.+.+..++..+ +...|..+++.....++|||+|+.+.++.+++.|.+.|+.+..+||+
T Consensus 472 ~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~-k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~ 550 (673)
T KOG0333|consen 472 SYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDE-KRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGG 550 (673)
T ss_pred HHhhCCeEEEeccCCCCccchheEEEEecchH-HHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCC
Confidence 99999999998888888888899888887776 69999999999888899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHH
Q 015454 306 MPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILR 385 (406)
Q Consensus 306 ~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~ 385 (406)
-++++|..++..|++|..+|||||+++++|+|+|++.+||.++.++++.+|.||+||+||.|+.|.++.|+.+.|...++
T Consensus 551 k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~y 630 (673)
T KOG0333|consen 551 KSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFY 630 (673)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-cccccCCcccc
Q 015454 386 DIEQYYS-TQIDEMPMNVA 403 (406)
Q Consensus 386 ~~~~~~~-~~~~~~~~~~~ 403 (406)
+|.+.+. ......|+.++
T Consensus 631 dLkq~l~es~~s~~P~Ela 649 (673)
T KOG0333|consen 631 DLKQALRESVKSHCPPELA 649 (673)
T ss_pred HHHHHHHHhhhccCChhhc
Confidence 9999887 44444555543
No 17
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-56 Score=383.81 Aligned_cols=357 Identities=32% Similarity=0.544 Sum_probs=318.1
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCC----C-ceeEE
Q 015454 33 TSFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----R-EVQAL 105 (406)
Q Consensus 33 ~~~~~~~--l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~----~-~~~~l 105 (406)
..|++++ |++++++++...||...||.|..++|.++.++|+++.++||||||++|++|++..+.... + ...++
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3465555 559999999999999999999999999999999999999999999999999999883221 1 23689
Q ss_pred EEcCcHHHHHHHHHHHHHhccC-cceeEEEEECCcchHHhHHHHh-cCCCEEEechHHHHHHHHccC--CCcCCcceeec
Q 015454 106 ILSPTRELATQTEKVILAIGDF-INIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVL 181 (406)
Q Consensus 106 il~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~iii~T~~~l~~~l~~~~--~~~~~~~~vV~ 181 (406)
|++||++|+.|..+.+..+... .++....+.||.+..++...+. .+++|+|+||++|.+.+.+.. +.+.++.++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999887765 6788889999999888887654 558899999999999998844 44569999999
Q ss_pred chhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCcc--ccCCceEEEEEecccccH
Q 015454 182 DESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDEL--TLEGIKQFFVAVEREEWK 259 (406)
Q Consensus 182 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 259 (406)
|||+.+.+.+|...+..++..+|...+.=++|||-..+..++....+.+|+.+.+..... .+.....+|..+.... +
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~e-K 242 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADE-K 242 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHH-H
Confidence 999999999999999999999999999999999999999999999999999988877665 6666777777776655 9
Q ss_pred HHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcC--CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCC
Q 015454 260 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLD 337 (406)
Q Consensus 260 ~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 337 (406)
...+..++.....+|++||++|...++++...|... ...+..+||.+.+..|..+++.|.+....+|+||+++.+|+|
T Consensus 243 ~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 243 LSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 999999999998899999999999999999988765 568999999999999999999999988899999999999999
Q ss_pred CCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHH
Q 015454 338 VQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQY 390 (406)
Q Consensus 338 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (406)
+|++++|+++++|.+++.|.||+||++|.|+.|.+++|+.+++..+++-+.-.
T Consensus 323 ip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~ 375 (567)
T KOG0345|consen 323 IPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIK 375 (567)
T ss_pred CCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999887777666544
No 18
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-56 Score=391.35 Aligned_cols=367 Identities=29% Similarity=0.499 Sum_probs=331.2
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc----CCCceeE
Q 015454 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT----SSREVQA 104 (406)
Q Consensus 29 ~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~----~~~~~~~ 104 (406)
......|.+++++....++|...+|..++..|+++++..+.|++++-.|-||||||++|++|++..+.. ...|.-+
T Consensus 65 ~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGa 144 (758)
T KOG0343|consen 65 STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGA 144 (758)
T ss_pred hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCcee
Confidence 456678999999999999999999999999999999999999999999999999999999999998843 3456779
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc-cCCCcCCcceeecch
Q 015454 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDE 183 (406)
Q Consensus 105 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~-~~~~~~~~~~vV~DE 183 (406)
||++||++|+.|+.+.+.+.+...+++.+.+.||.+.......+ +..+|+||||++|+.++.. -.+...++.++|+||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 99999999999999999999999999999999999977666655 4589999999999998866 456778899999999
Q ss_pred hhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecC--CccccCCceEEEEEecccccHHH
Q 015454 184 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKR--DELTLEGIKQFFVAVEREEWKFD 261 (406)
Q Consensus 184 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 261 (406)
|+.+++.+|...+..+++.+|+..|.+++|||......++..-.+.+|..+.+-. ....+.+..++|..++..+ +++
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~-Ki~ 302 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLED-KID 302 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhh-HHH
Confidence 9999999999999999999999999999999999999999988889987776553 3456778888888888776 999
Q ss_pred HHHHHHhhcCCcceEEEecchhhHHHHHHHHhcC--CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCC
Q 015454 262 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ 339 (406)
Q Consensus 262 ~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 339 (406)
.|..+++.+...|.|||++|.+++..+++.|++. |+++..+||.+++..|..++.+|......||+||+++++|+|+|
T Consensus 303 ~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 303 MLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred HHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCc
Confidence 9999999999999999999999999999999875 78899999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCc-HHHHHHHHHHHccccccC
Q 015454 340 QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDD-IKILRDIEQYYSTQIDEM 398 (406)
Q Consensus 340 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 398 (406)
.+++||++++|.++.+|+||+||..|++..|.+++++.+.+ +.++..+++.- ...+++
T Consensus 383 aVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i 441 (758)
T KOG0343|consen 383 AVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEI 441 (758)
T ss_pred ccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhh
Confidence 99999999999999999999999999999999999999988 45555555442 444433
No 19
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-56 Score=390.19 Aligned_cols=359 Identities=31% Similarity=0.534 Sum_probs=331.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCC---CceeEEEEc
Q 015454 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---REVQALILS 108 (406)
Q Consensus 32 ~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~---~~~~~lil~ 108 (406)
..+|.+++|+..+++++...||..|+|+|...+|-.+-|++++.+|.||||||.+|++|++..+...+ ...++||+|
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 45899999999999999999999999999999999999999999999999999999999998875433 345899999
Q ss_pred CcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc-cCCCcCCcceeecchhhHH
Q 015454 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEM 187 (406)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~-~~~~~~~~~~vV~DE~h~~ 187 (406)
||++|+.|.+...++++.+.++.++.+.||.+...+...+.+.+||+|+||++|.+++.+ ..+.++++.++|+|||+++
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 999999999999999999999999999999999999999999999999999999999877 4688899999999999999
Q ss_pred hccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEe--cccccHHHHHHH
Q 015454 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAV--EREEWKFDTLCD 265 (406)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ 265 (406)
+..+|...+..+++.+++..|.+++|||++..+.++..-.+..|+.+.++.+........+-+... ......-..+..
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~ 419 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLAS 419 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHH
Confidence 999999999999999999999999999999999999999999999999998877777766654433 334445667777
Q ss_pred HHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEE
Q 015454 266 LYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVI 345 (406)
Q Consensus 266 ~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 345 (406)
++...-..+++||+.+.+.|.++.-.|--.|+++.-+||.+++.+|-+.++.|++++++|||||+++++|+|++++..||
T Consensus 420 l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVI 499 (691)
T KOG0338|consen 420 LITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVI 499 (691)
T ss_pred HHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEE
Confidence 77777678999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHH
Q 015454 346 NYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQY 390 (406)
Q Consensus 346 ~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (406)
.|..|.+...|+||+||+.|.|+.|..+.++.++|.+.++.+.+.
T Consensus 500 Ny~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 500 NYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 999999999999999999999999999999999999998888766
No 20
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.3e-55 Score=381.28 Aligned_cols=356 Identities=30% Similarity=0.500 Sum_probs=321.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC----CCceeEEEE
Q 015454 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQALIL 107 (406)
Q Consensus 32 ~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~----~~~~~~lil 107 (406)
...|+...+++...+++...||..+++.|...++.++.|++++..|-||+|||++|++|+++.+... ..+..++|+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 5567889999999999999999999999999999999999999999999999999999999988543 346679999
Q ss_pred cCcHHHHHHHHHHHHHhccCc-ceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHcc-CCCcCCcceeecchhh
Q 015454 108 SPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESD 185 (406)
Q Consensus 108 ~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~-~~~~~~~~~vV~DE~h 185 (406)
|||++|+.|.+.+++++.... ++.+..+.||.+.......+..+++|+|+||++|.+++++. .+.+.+.+++|+|||+
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 999999999999999998877 88999999999998888888889999999999999999884 4566778899999999
Q ss_pred HHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCC-CeEEEecC--CccccCCceEEEEEecccccHHHH
Q 015454 186 EMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTD-PVKILVKR--DELTLEGIKQFFVAVEREEWKFDT 262 (406)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 262 (406)
++++.+|...+..+++.++...|.+++|||.++...+...-.+.. +..+.+.. ...+.+.+.+-|...+... .+..
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~-~f~l 319 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS-RFSL 319 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc-hHHH
Confidence 999999999999999999999999999999999988877665544 55555443 3345566777666666655 5888
Q ss_pred HHHHHhhcCC-cceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCC
Q 015454 263 LCDLYDTLTI-TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQV 341 (406)
Q Consensus 263 l~~~~~~~~~-~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 341 (406)
+..+++++.. .|++|||+|......+++.|....++|..+||+.++..|..+..+|...+.-||+||+++.+|+|+|++
T Consensus 320 l~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V 399 (543)
T KOG0342|consen 320 LYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDV 399 (543)
T ss_pred HHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCc
Confidence 8888888877 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHH
Q 015454 342 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 388 (406)
Q Consensus 342 ~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~ 388 (406)
++|+++++|.++.+|+||+||+||.|+.|++++++.+.+...+..+.
T Consensus 400 ~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 400 DWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred eEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 99999999999999999999999999999999999999988888877
No 21
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-55 Score=364.40 Aligned_cols=370 Identities=34% Similarity=0.539 Sum_probs=330.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCc
Q 015454 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~ 110 (406)
....|+.+|+++|+.+.|...|+..|+|.|..++|.|++|+|++=+|.||||||.+|.+|+++.+...+.+-.+++++||
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPT 84 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPT 84 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecch
Confidence 44679999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHcc----CCCcCCcceeecchhhH
Q 015454 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLVLDESDE 186 (406)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~----~~~~~~~~~vV~DE~h~ 186 (406)
++|+-|..+++..++...++++..+.||.....+...+...++++|+||+++..++..+ .+.+.++.++|+|||+.
T Consensus 85 rELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADr 164 (442)
T KOG0340|consen 85 RELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADR 164 (442)
T ss_pred HHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhh
Confidence 99999999999999999999999999999998888889999999999999999888765 45678899999999999
Q ss_pred HhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCC--eEEEecCCccccCCceEEEEEecccccHHHHHH
Q 015454 187 MLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDP--VKILVKRDELTLEGIKQFFVAVEREEWKFDTLC 264 (406)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 264 (406)
+.+..|...+..+.+.+|...|.+++|||+++.+..........+ ..+....+....+...+-|..++... +...+.
T Consensus 165 vL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~v-kdaYLv 243 (442)
T KOG0340|consen 165 VLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDV-KDAYLV 243 (442)
T ss_pred hhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhh-hHHHHH
Confidence 999999999999999999999999999999987777655544442 22333334444455555555555443 666667
Q ss_pred HHHhhcCC---cceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCC
Q 015454 265 DLYDTLTI---TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQV 341 (406)
Q Consensus 265 ~~~~~~~~---~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 341 (406)
.+++.... +.++||+|+..+++.++..|+..++.+..+|+.|++.+|...+.+|+++..++||||+++++|+|+|.+
T Consensus 244 ~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V 323 (442)
T KOG0340|consen 244 HLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTV 323 (442)
T ss_pred HHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCce
Confidence 77765543 579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCcc
Q 015454 342 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMN 401 (406)
Q Consensus 342 ~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (406)
+.|+.++.|.++.+|+||.||..|.|+.|.++.++..+|.+.+..+++-......+++..
T Consensus 324 ~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~ 383 (442)
T KOG0340|consen 324 ELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKV 383 (442)
T ss_pred eEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccccc
Confidence 999999999999999999999999999999999999999999999999998888887743
No 22
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-55 Score=386.58 Aligned_cols=383 Identities=33% Similarity=0.516 Sum_probs=345.8
Q ss_pred ceeeccCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCC-
Q 015454 21 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS- 99 (406)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~- 99 (406)
++......+.++..|.+-.+.+.+...+...++..|+|+|+.+++.+..|++.+.+|+||||||.+|++|++..+....
T Consensus 62 v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~ 141 (482)
T KOG0335|consen 62 VKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGP 141 (482)
T ss_pred eeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCc
Confidence 3344456666777898888999999998889999999999999999999999999999999999999999998874432
Q ss_pred ---------CceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccC
Q 015454 100 ---------REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT 170 (406)
Q Consensus 100 ---------~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~ 170 (406)
..+.++|++||++|+.|.+.+.+++.....+.....+++.+...+......+++|+|+||++|.++++...
T Consensus 142 ~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~ 221 (482)
T KOG0335|consen 142 EDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK 221 (482)
T ss_pred ccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce
Confidence 24789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCcceeecchhhHHhc-cCcHHHHHHHHHhCCC----CceEEEEEecCChHHHHHHHhcCCC-CeEEEecCCccccC
Q 015454 171 LRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPP----DLQVVLISATLPHEILEMTTKFMTD-PVKILVKRDELTLE 244 (406)
Q Consensus 171 ~~~~~~~~vV~DE~h~~~~-~~~~~~~~~~~~~~~~----~~~~i~lSAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 244 (406)
+.+++++++|+|||+.+.+ .+|...+..++..... ..|.+++|||.+..+..+...++.+ .+.+.+.......+
T Consensus 222 i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ 301 (482)
T KOG0335|consen 222 ISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSE 301 (482)
T ss_pred eehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccc
Confidence 9999999999999999998 8999999999887743 6789999999999988887777776 66777777777788
Q ss_pred CceEEEEEecccccHHHHHHHHHhhcC----Cc-----ceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHH
Q 015454 245 GIKQFFVAVEREEWKFDTLCDLYDTLT----IT-----QAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIM 315 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~-----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 315 (406)
++.+-...+...+ +...|..++.... .+ +++|||.+++.+..+...|...++++..+||..++.+|.+.+
T Consensus 302 ni~q~i~~V~~~~-kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al 380 (482)
T KOG0335|consen 302 NITQKILFVNEME-KRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQAL 380 (482)
T ss_pred cceeEeeeecchh-hHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHH
Confidence 8888888888777 5555555554332 23 799999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHcccc
Q 015454 316 GEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQI 395 (406)
Q Consensus 316 ~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
+.|++|.+.+||||+++++|+|+|+++|||.|+.|.+..+|+||+||+||.|+.|.++.|++..+....+.+-+.+.+..
T Consensus 381 ~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~ 460 (482)
T KOG0335|consen 381 NDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEAN 460 (482)
T ss_pred HHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccc
Q 015454 396 DEMPMNVAD 404 (406)
Q Consensus 396 ~~~~~~~~~ 404 (406)
+++|.||.+
T Consensus 461 q~vP~wl~~ 469 (482)
T KOG0335|consen 461 QEVPQWLSE 469 (482)
T ss_pred ccCcHHHHh
Confidence 999999965
No 23
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-55 Score=370.98 Aligned_cols=392 Identities=31% Similarity=0.503 Sum_probs=344.4
Q ss_pred cCCCCCCCCCcceeeccCCccccccccc-CCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhH
Q 015454 10 RGGGGGMDDDKMVFETTEGVEAITSFDA-MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~ 88 (406)
+..+.-+-++.-+.+...-+.|.-+|++ +...+++.+...+.||..|+|+|.++||.++.|++.+-.|.||+|||++|+
T Consensus 196 ~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L 275 (629)
T KOG0336|consen 196 KENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFL 275 (629)
T ss_pred HcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHh
Confidence 3344433333333333444555556654 668889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhc------cCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHH
Q 015454 89 LTVCQTVD------TSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV 162 (406)
Q Consensus 89 ~~i~~~~~------~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l 162 (406)
+|-+-++. ....++.+|+++||++|+.|..-+..++. ..+....+++|+.+..+++..+..+.+|+|+||.+|
T Consensus 276 ~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrl 354 (629)
T KOG0336|consen 276 LPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRL 354 (629)
T ss_pred ccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchH
Confidence 99877663 23456789999999999999988887765 556777788999999999999999999999999999
Q ss_pred HHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccc
Q 015454 163 CDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELT 242 (406)
Q Consensus 163 ~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (406)
.++...+..++.++.++|+|||+.+++.+|..++..++-...+..|.++.|||+|+....+...++.+|..+.+-.-+..
T Consensus 355 ndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~ 434 (629)
T KOG0336|consen 355 NDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLV 434 (629)
T ss_pred hhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEeccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987776554433
Q ss_pred c-CCceEEEEEecccccHHHHHHHHHhhcCC-cceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhc
Q 015454 243 L-EGIKQFFVAVEREEWKFDTLCDLYDTLTI-TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS 320 (406)
Q Consensus 243 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 320 (406)
. ..+.+.. .+.....+++.+..+.+.... .|+||||.....|+.+...|.-.|+....+||.-.+.+|+..+++|++
T Consensus 435 a~~sVkQ~i-~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ks 513 (629)
T KOG0336|consen 435 AVKSVKQNI-IVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKS 513 (629)
T ss_pred eeeeeeeeE-EecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhc
Confidence 3 4445555 666666788888888887654 599999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCc
Q 015454 321 GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPM 400 (406)
Q Consensus 321 ~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (406)
|+++|||+|+.+++|+|+|+++||+.|+.|.+...|+||+||.||.|++|..+.|+..+|-...+.+.+.|+...+++|.
T Consensus 514 G~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPd 593 (629)
T KOG0336|consen 514 GEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPD 593 (629)
T ss_pred CceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 015454 401 NVA 403 (406)
Q Consensus 401 ~~~ 403 (406)
.|.
T Consensus 594 eL~ 596 (629)
T KOG0336|consen 594 ELV 596 (629)
T ss_pred HHH
Confidence 773
No 24
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-54 Score=364.82 Aligned_cols=378 Identities=64% Similarity=1.049 Sum_probs=356.1
Q ss_pred cCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEE
Q 015454 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (406)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~l 105 (406)
+.-.+-..+|++++|.+++++.++..||..|+..|++|+..+.+|.|+..++.+|+|||.++..+++..+....+...++
T Consensus 19 sn~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qal 98 (397)
T KOG0327|consen 19 SNWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQAL 98 (397)
T ss_pred ccHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHH
Confidence 44445667999999999999999999999999999999999999999999999999999999999999987776777899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHH-HHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchh
Q 015454 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR-KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (406)
Q Consensus 106 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~ 184 (406)
+++|+++|+.|..+....++...+..+..+.|+.....+.. .....++|+++||++....+....+....+.++|+||+
T Consensus 99 ilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 99 ILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA 178 (397)
T ss_pred HhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecch
Confidence 99999999999999999999999999999999988875444 34455899999999999999888888888999999999
Q ss_pred hHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHH
Q 015454 185 DEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLC 264 (406)
Q Consensus 185 h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 264 (406)
+.+.+.++.+.+..+.+.++++.|++++|||.++++......++.+|+.+....++...+++.+++..+...+ |...+.
T Consensus 179 DEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l~ 257 (397)
T KOG0327|consen 179 DEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTLC 257 (397)
T ss_pred HhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887 999999
Q ss_pred HHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEE
Q 015454 265 DLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLV 344 (406)
Q Consensus 265 ~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~v 344 (406)
.+++ ...+.++|||+++.+..+...|...++.+..+|+++.+.+|+.++++|+.|..+|||+|..+++|+|+..+..|
T Consensus 258 dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 258 DLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 9999 44789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccccC
Q 015454 345 INYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 406 (406)
Q Consensus 345 i~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (406)
+.++.|.....|++|+||+||.|++|.++.++.+.+...+++++++|...++++|.+..+|+
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l~ 397 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADLL 397 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999998875
No 25
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-52 Score=365.42 Aligned_cols=380 Identities=32% Similarity=0.502 Sum_probs=353.4
Q ss_pred cCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC-----CC
Q 015454 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-----SR 100 (406)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~-----~~ 100 (406)
...+.+.+.|+.++++++|..+..+..|.+|++.|.++++..+.|++++=.|.||||||-+|++|++-++... ..
T Consensus 216 ~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~ 295 (731)
T KOG0339|consen 216 SSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGE 295 (731)
T ss_pred CCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCC
Confidence 5677889999999999999999999999999999999999999999999999999999999999999887432 45
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceee
Q 015454 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (406)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV 180 (406)
++..+|++||++|+.|++.+.+++++.+++++..++||.+..++...+..++.|+|+||++|..++.-...++.+.+++|
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLV 375 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHH
Q 015454 181 LDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF 260 (406)
Q Consensus 181 ~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (406)
+||++.+.+.+|..+++.+....++..|.+++|||+...+..+...++..|+.+....-......+.+.+..+...+.|+
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl 455 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKL 455 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHH
Confidence 99999999999999999999999999999999999999999999999999998887655566677888888888887777
Q ss_pred HHHHH-HHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCC
Q 015454 261 DTLCD-LYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ 339 (406)
Q Consensus 261 ~~l~~-~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 339 (406)
.-|.. +......+++|+|+.-...++.++..|+-.++++..+||++++.+|++++..|+.+...||++|+...+|+|+|
T Consensus 456 ~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~ 535 (731)
T KOG0339|consen 456 NWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIP 535 (731)
T ss_pred HHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcc
Confidence 75544 44444557999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCcccccc
Q 015454 340 QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADL 405 (406)
Q Consensus 340 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (406)
++..|+.++...++..+.||+||.||.|..|..+.++.+.|....-.|-+.|+-+.+.+|..|-||
T Consensus 536 ~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dl 601 (731)
T KOG0339|consen 536 SIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDL 601 (731)
T ss_pred ccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999877654
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-52 Score=366.85 Aligned_cols=372 Identities=28% Similarity=0.461 Sum_probs=310.3
Q ss_pred ceeeccCCcccccccccCCCCHHHHHHHHH-CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC-
Q 015454 21 MVFETTEGVEAITSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS- 98 (406)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~-~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~- 98 (406)
++...++.+-....|..+|+++.+...|+. .++..|+..|.+++|.++.|+|++|.++||||||++|++|+.+.+...
T Consensus 124 vvk~v~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~ 203 (708)
T KOG0348|consen 124 VVKQVSEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAME 203 (708)
T ss_pred hhccccccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcC
Confidence 445556777888999999999999999976 589999999999999999999999999999999999999999988443
Q ss_pred -----CCceeEEEEcCcHHHHHHHHHHHHHhccCc-ceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc-cCC
Q 015454 99 -----SREVQALILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTL 171 (406)
Q Consensus 99 -----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~-~~~ 171 (406)
..|.-+|+++||++|+.|.++.++++.... .+..+.+.||.....+..++..+++|+|+||++|.+++.+ ..+
T Consensus 204 ~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i 283 (708)
T KOG0348|consen 204 PKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSI 283 (708)
T ss_pred ccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchh
Confidence 346779999999999999999999987654 5666778898888778888899999999999999999887 457
Q ss_pred CcCCcceeecchhhHHhccCcHHHHHHHHHhCC-------------CCceEEEEEecCChHHHHHHHhcCCCCeEEEecC
Q 015454 172 RTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-------------PDLQVVLISATLPHEILEMTTKFMTDPVKILVKR 238 (406)
Q Consensus 172 ~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~-------------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~ 238 (406)
.++.++++|+||++.+.+.+|...+..+++... +..|.+++|||+.+....+..-.+.+|..+..+.
T Consensus 284 ~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~ 363 (708)
T KOG0348|consen 284 KFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDK 363 (708)
T ss_pred eeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccc
Confidence 788899999999999999999998888877662 2367899999999988888888888887776221
Q ss_pred C-------------------------ccccCCceEEEEEecccccHH---HHHHHHHhhcCCcceEEEecchhhHHHHHH
Q 015454 239 D-------------------------ELTLEGIKQFFVAVEREEWKF---DTLCDLYDTLTITQAVIFCNTKRKVDWLTE 290 (406)
Q Consensus 239 ~-------------------------~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~k~lif~~~~~~~~~l~~ 290 (406)
. ...+++..+.|..++.-.... ..|.+..+.....|+|||+++.+.++.-+.
T Consensus 364 s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~ 443 (708)
T KOG0348|consen 364 SHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYS 443 (708)
T ss_pred hhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHH
Confidence 0 111233445555555543222 223333344455689999999999988777
Q ss_pred HHhcC----------------------CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEec
Q 015454 291 KMRGY----------------------NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYD 348 (406)
Q Consensus 291 ~l~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 348 (406)
.|... +.++..+||+|.+.+|..+++.|+..+-.||+||+++++|+|+|.+++||+|+
T Consensus 444 lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd 523 (708)
T KOG0348|consen 444 LFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYD 523 (708)
T ss_pred HHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeC
Confidence 77532 34588899999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHc
Q 015454 349 LPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYS 392 (406)
Q Consensus 349 ~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (406)
+|.++.+|+||+||+.|.|..|.+++|+.+.+.+++..+..+-.
T Consensus 524 ~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~ 567 (708)
T KOG0348|consen 524 PPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHI 567 (708)
T ss_pred CCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999998888766543
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-52 Score=357.49 Aligned_cols=361 Identities=29% Similarity=0.459 Sum_probs=317.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc------CCCceeEEE
Q 015454 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT------SSREVQALI 106 (406)
Q Consensus 33 ~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~------~~~~~~~li 106 (406)
.+|++++|++.+++++.+.|+..|+-.|..++|.+++|+|++..|-||||||.+|++|+++.+.. +..+..++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 78999999999999999999999999999999999999999999999999999999999998743 345678999
Q ss_pred EcCcHHHHHHHHHHHHHhccCcc--eeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccC-CCcCCcceeecch
Q 015454 107 LSPTRELATQTEKVILAIGDFIN--IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT-LRTRAIKLLVLDE 183 (406)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~-~~~~~~~~vV~DE 183 (406)
++||++|+.|.+..+.++..... +.+..+..+.+.......+...++|+|+||..+..++..+. .....++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999887765443 44444444444444446677789999999999999998876 6678899999999
Q ss_pred hhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccc-cCCceEEEEEecccccHHHH
Q 015454 184 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELT-LEGIKQFFVAVEREEWKFDT 262 (406)
Q Consensus 184 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 262 (406)
|+.+.+.+|.+.+..+.+.+|+..|.++||||+++++..+...++.+|+.+.....+.. ..+..+++..+. ..+++..
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs-e~DKfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS-EEDKFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec-cchhHHH
Confidence 99999999999999999999999999999999999999999999999988776655544 456677777777 5558888
Q ss_pred HHHHHhhc-CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcC-----------
Q 015454 263 LCDLYDTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD----------- 330 (406)
Q Consensus 263 l~~~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~----------- 330 (406)
+..+++-. -.+|.|||+|+++.+.++.-.|...|++..+++|.++...|-.++++|+.|-++++|||+
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 88877633 347999999999999999999999999999999999999999999999999999999998
Q ss_pred ------------------------cccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHH
Q 015454 331 ------------------------VWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRD 386 (406)
Q Consensus 331 ------------------------~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~ 386 (406)
-.++|+|+..+.+|+.++.|.++..|+||+||++|.+++|.++.|+.+.+......
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKES 417 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhH
Confidence 13579999999999999999999999999999999999999999999998887777
Q ss_pred HHHHHccc
Q 015454 387 IEQYYSTQ 394 (406)
Q Consensus 387 ~~~~~~~~ 394 (406)
+++.+...
T Consensus 418 le~~~~d~ 425 (569)
T KOG0346|consen 418 LESILKDE 425 (569)
T ss_pred HHHHHhhH
Confidence 77776553
No 28
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.8e-53 Score=359.74 Aligned_cols=381 Identities=32% Similarity=0.541 Sum_probs=337.4
Q ss_pred eeccCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc-----
Q 015454 23 FETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT----- 97 (406)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~----- 97 (406)
.+-...+.++.+|.++.++..+++.|.+.|+..|+|+|.+-+|-+++|++.+-.|-||||||++|.+|++-...+
T Consensus 160 veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~l 239 (610)
T KOG0341|consen 160 VEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMML 239 (610)
T ss_pred eeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcC
Confidence 344566788899999999999999999999999999999999999999999999999999999999988754421
Q ss_pred ---CCCceeEEEEcCcHHHHHHHHHHHHHhccCc------ceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc
Q 015454 98 ---SSREVQALILSPTRELATQTEKVILAIGDFI------NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR 168 (406)
Q Consensus 98 ---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~ 168 (406)
...++-.||+||+++|+.|+++.+..+.... .+....+.||....++......+.+|+|+||++|.+.+..
T Consensus 240 Pf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K 319 (610)
T KOG0341|consen 240 PFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK 319 (610)
T ss_pred ccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH
Confidence 2346779999999999999999887765332 3566778999999999999999999999999999999999
Q ss_pred cCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceE
Q 015454 169 KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQ 248 (406)
Q Consensus 169 ~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (406)
....+..++++.+||++++.+.+|...++.++..++...|.+++|||++..+..+...-+..|+.+.+-......-++.+
T Consensus 320 K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQ 399 (610)
T KOG0341|consen 320 KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQ 399 (610)
T ss_pred hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998887665544444333
Q ss_pred EEEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEE
Q 015454 249 FFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLIT 328 (406)
Q Consensus 249 ~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~ 328 (406)
.+..+.... ++-.+...+++.. .++||||.....++.++++|--.|..+..+||+-++++|...++.|+.|+-+|||+
T Consensus 400 evEyVkqEa-KiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVA 477 (610)
T KOG0341|consen 400 EVEYVKQEA-KIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVA 477 (610)
T ss_pred HHHHHHhhh-hhhhHHHHhccCC-CceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEE
Confidence 333333333 6667777777655 68999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccC-cHHHHHHHHHHHccccccCCcccccc
Q 015454 329 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKND-DIKILRDIEQYYSTQIDEMPMNVADL 405 (406)
Q Consensus 329 t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (406)
|++++.|+|+|++.|||.|+.|.....|.||+||+||.|++|.+..|++.. +...+-++.+.+.+.-+++|+.|+.|
T Consensus 478 TDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L 555 (610)
T KOG0341|consen 478 TDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAEL 555 (610)
T ss_pred ecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHh
Confidence 999999999999999999999999999999999999999999999999975 66788999999999999999888664
No 29
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1e-50 Score=395.42 Aligned_cols=351 Identities=19% Similarity=0.268 Sum_probs=276.5
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHH
Q 015454 39 GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (406)
Q Consensus 39 ~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~ 118 (406)
.+++.+.++|...||..|+++|.++++.+++|+|+++.+|||||||++|++|++..+... ++.++||++|+++|+.|+.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l~PtraLa~q~~ 98 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-PRATALYLAPTKALAADQL 98 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEEcChHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999999999988653 4578999999999999999
Q ss_pred HHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHcc----CCCcCCcceeecchhhHHhccCcHH
Q 015454 119 KVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLVLDESDEMLSRGFKD 194 (406)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~----~~~~~~~~~vV~DE~h~~~~~~~~~ 194 (406)
..++.+. ..++.+..+.|+....+ ...+..+++|+|+||+++...+... ...++++++||+||+|.+.+ .++.
T Consensus 99 ~~l~~l~-~~~i~v~~~~Gdt~~~~-r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~ 175 (742)
T TIGR03817 99 RAVRELT-LRGVRPATYDGDTPTEE-RRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGS 175 (742)
T ss_pred HHHHHhc-cCCeEEEEEeCCCCHHH-HHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHH
Confidence 9999987 44677877777776543 3445566899999999997543221 12367899999999999865 3554
Q ss_pred HHHHHHH-------hCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecc------------
Q 015454 195 QIYDVYR-------YLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER------------ 255 (406)
Q Consensus 195 ~~~~~~~-------~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 255 (406)
.+..+++ ..+..+|++++|||+++.. .....++..+..+. ..+.... ....+....+.
T Consensus 176 ~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~i-~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~ 252 (742)
T TIGR03817 176 HVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVAV-TEDGSPR-GARTVALWEPPLTELTGENGAPV 252 (742)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEEE-CCCCCCc-CceEEEEecCCcccccccccccc
Confidence 4433332 3356789999999998864 45566666664443 2222211 11222211111
Q ss_pred ----cccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcC--------CceEEEeecCCCHHHHHHHHHHHhcCCC
Q 015454 256 ----EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY--------NFTVSSMHGDMPQKERDAIMGEFRSGTT 323 (406)
Q Consensus 256 ----~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 323 (406)
...+...+..+++. ..++||||+|++.++.++..|++. +.++..+||++++++|..++++|++|++
T Consensus 253 r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i 330 (742)
T TIGR03817 253 RRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGEL 330 (742)
T ss_pred ccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCc
Confidence 11244556666654 369999999999999999988653 5678899999999999999999999999
Q ss_pred cEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEecc--CcHHHHHHHHHHHccccccC
Q 015454 324 RVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKN--DDIKILRDIEQYYSTQIDEM 398 (406)
Q Consensus 324 ~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 398 (406)
++||||+++++|+|+|++++||+++.|.+..+|.||+||+||.|+.|.++++..+ .|...+...++.++...+..
T Consensus 331 ~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~ 407 (742)
T TIGR03817 331 LGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEAT 407 (742)
T ss_pred eEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccc
Confidence 9999999999999999999999999999999999999999999999999998864 45566777777887766654
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-51 Score=344.81 Aligned_cols=372 Identities=41% Similarity=0.690 Sum_probs=335.4
Q ss_pred cCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcC--CcEEEECCCCCChhhHhHHHHHhhhccCCCcee
Q 015454 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQ 103 (406)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~--~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~ 103 (406)
..+....++|+++.|.+++.+.+...+|..|+.+|..++|.++.. +|.|.++..|+|||.+|.+.++.........++
T Consensus 83 nsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ 162 (477)
T KOG0332|consen 83 NSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQ 162 (477)
T ss_pred CCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCC
Confidence 445556688999999999999999999999999999999999985 789999999999999999999999877777778
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc-cCCCcCCcceeecc
Q 015454 104 ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLD 182 (406)
Q Consensus 104 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~-~~~~~~~~~~vV~D 182 (406)
++-++|+++|+.|..+.+.+.+.+.++.......+..... ...-...|+|+||+.+.++... ..+....++++|+|
T Consensus 163 ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r---G~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlD 239 (477)
T KOG0332|consen 163 CICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR---GNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLD 239 (477)
T ss_pred ceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc---CCcchhheeeCCCccHHHHHHHHHhhChhhceEEEec
Confidence 8888999999999999999999998888777665542111 1112258999999999998887 77888999999999
Q ss_pred hhhHHhcc-CcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHH
Q 015454 183 ESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFD 261 (406)
Q Consensus 183 E~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (406)
||+.+.+. ++.+.-..+.+.+++..|.+++|||.......+...+..++..+....++....++.++|..+...+.|.+
T Consensus 240 EAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~ 319 (477)
T KOG0332|consen 240 EADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQ 319 (477)
T ss_pred chhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHH
Confidence 99988754 58888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCC
Q 015454 262 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQV 341 (406)
Q Consensus 262 ~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 341 (406)
.|..++.....++.+|||.++..+..++..+...|+.+..+||++...+|..++++|++|..+|||+|+++.+|+|++.+
T Consensus 320 ~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qV 399 (477)
T KOG0332|consen 320 ALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQV 399 (477)
T ss_pred HHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceE
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCC------CChhhhHhhhhhccCCCCceeEEEEeccC-cHHHHHHHHHHHccccccCCc
Q 015454 342 SLVINYDLP------NNRELYIHRIGRSGRFGRKGVAINFVKND-DIKILRDIEQYYSTQIDEMPM 400 (406)
Q Consensus 342 ~~vi~~~~~------~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 400 (406)
+.||.|+.| .+...|+||+||+||.|+.|.++-+++.. +...+..++++++.....+.+
T Consensus 400 s~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 400 SVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDP 465 (477)
T ss_pred EEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCC
Confidence 999999998 46789999999999999999999888865 556777999999888777654
No 31
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-51 Score=359.90 Aligned_cols=367 Identities=27% Similarity=0.454 Sum_probs=302.0
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcC-CcEEEECCCCCChhhHhHHHHHhhhccC-------
Q 015454 27 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTS------- 98 (406)
Q Consensus 27 ~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~-~~~il~~~tGsGKT~~~~~~i~~~~~~~------- 98 (406)
......+.|.+++++..++++|...||..|+++|...+|.+..| .+++-.|.||||||++|-+|+++.+.+.
T Consensus 175 ~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~ 254 (731)
T KOG0347|consen 175 SSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQEL 254 (731)
T ss_pred ccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhh
Confidence 33445678999999999999999999999999999999999998 7999999999999999999999955332
Q ss_pred ----CCcee--EEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCC-
Q 015454 99 ----SREVQ--ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL- 171 (406)
Q Consensus 99 ----~~~~~--~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~- 171 (406)
.+..+ +||++||++|+.|+..-+..+....++.+..+.||.....+.+.+.+.++|+|+||++||.++.....
T Consensus 255 ~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~ 334 (731)
T KOG0347|consen 255 SNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTH 334 (731)
T ss_pred hhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhh
Confidence 12334 99999999999999999999999999999999999999999898989999999999999999987554
Q ss_pred --CcCCcceeecchhhHHhccCcHHHHHHHHHhCC-----CCceEEEEEecCChHH---------------------HHH
Q 015454 172 --RTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-----PDLQVVLISATLPHEI---------------------LEM 223 (406)
Q Consensus 172 --~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~-----~~~~~i~lSAT~~~~~---------------------~~~ 223 (406)
.+..++++|+||++++...+..+.+..+++.+. +..|.+.+|||++-.. ..+
T Consensus 335 l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~L 414 (731)
T KOG0347|consen 335 LGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHL 414 (731)
T ss_pred hhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHH
Confidence 467789999999999999998888888877775 4578999999974221 112
Q ss_pred HHh--cCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEE
Q 015454 224 TTK--FMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSS 301 (406)
Q Consensus 224 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~ 301 (406)
+.. +..+|..+...+.......+..-...++. ..+.-.+..++..++ +++|||||+++.+.++.-.|...++....
T Consensus 415 mk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~-~eKD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 415 MKKIGFRGKPKIIDLTPQSATASTLTESLIECPP-LEKDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred HHHhCccCCCeeEecCcchhHHHHHHHHhhcCCc-cccceeEEEEEeecC-CceEEEechHHHHHHHHHHHhhcCCCCch
Confidence 211 22334333322222222221111111111 112223333444444 89999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcH
Q 015454 302 MHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 381 (406)
Q Consensus 302 ~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 381 (406)
+|+.|.+++|-.-+++|++....|||||+++.+|+|+|++.|||+|-.|.+...|+||.||+.|.+..|..+.++.+.+.
T Consensus 493 LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccc
Q 015454 382 KILRDIEQYYSTQI 395 (406)
Q Consensus 382 ~~~~~~~~~~~~~~ 395 (406)
..+.++++-++...
T Consensus 573 ~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 573 GPLKKLCKTLKKKE 586 (731)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999998886543
No 32
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.1e-48 Score=377.28 Aligned_cols=343 Identities=17% Similarity=0.286 Sum_probs=266.6
Q ss_pred cccc--cCCCCHHHHHHHHH-CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcC
Q 015454 33 TSFD--AMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (406)
Q Consensus 33 ~~~~--~~~l~~~i~~~l~~-~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P 109 (406)
..|. .+++...+...++. +|+..+++.|.++++.++.|+++++.+|||+|||++|++|++.. +..+|||+|
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISP 508 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISP 508 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeC
Confidence 3454 46666777776655 79999999999999999999999999999999999999999864 346999999
Q ss_pred cHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHh------cCCCEEEechHHHHH--HHHcc---CCCcCCcce
Q 015454 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE------HGVHVVSGTPGRVCD--MIKRK---TLRTRAIKL 178 (406)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iii~T~~~l~~--~l~~~---~~~~~~~~~ 178 (406)
+++|+.++...+... ++....+.++....+....+. ...+|+++||+++.. .+.+. ......+.+
T Consensus 509 LiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~Lsl 584 (1195)
T PLN03137 509 LVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLAR 584 (1195)
T ss_pred HHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccce
Confidence 999998777776553 477777778777655543322 458999999999852 11111 112344789
Q ss_pred eecchhhHHhccC--cHHHHHH---HHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEe
Q 015454 179 LVLDESDEMLSRG--FKDQIYD---VYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAV 253 (406)
Q Consensus 179 vV~DE~h~~~~~~--~~~~~~~---~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (406)
|||||||.++.|+ |+..+.. +...+ +..+++++|||+++.....+...+......... .....+++ ++...
T Consensus 585 IVIDEAHcVSqWGhDFRpdYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~RpNL--~y~Vv 660 (1195)
T PLN03137 585 FVIDEAHCVSQWGHDFRPDYQGLGILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFNRPNL--WYSVV 660 (1195)
T ss_pred eccCcchhhhhcccchHHHHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccCccce--EEEEe
Confidence 9999999999886 6555544 33444 456789999999998887766655433222222 22233333 33333
Q ss_pred cccccHHHHHHHHHhhc-CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcc
Q 015454 254 EREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVW 332 (406)
Q Consensus 254 ~~~~~~~~~l~~~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~ 332 (406)
.........+..++... ...++||||++++.++.+++.|...|+.+..|||+|++.+|..++++|..|+++|||||.++
T Consensus 661 ~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAF 740 (1195)
T PLN03137 661 PKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAF 740 (1195)
T ss_pred ccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechh
Confidence 33333345566666543 34679999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHH
Q 015454 333 ARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQ 389 (406)
Q Consensus 333 ~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~ 389 (406)
++|||+|++++||+++.|.++..|.|++||+||.|+++.|++|+...|...++.+.+
T Consensus 741 GMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 741 GMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred hcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998877766665543
No 33
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.5e-48 Score=364.71 Aligned_cols=323 Identities=19% Similarity=0.333 Sum_probs=251.1
Q ss_pred HCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcc
Q 015454 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (406)
Q Consensus 50 ~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (406)
.+|+..|+|+|.++++.+++|+++++.+|||+|||++|++|++.. +..++|++|+++|+.|+.+.+...+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~g---- 75 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKASG---- 75 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHcC----
Confidence 469999999999999999999999999999999999999998753 3468999999999999999987654
Q ss_pred eeEEEEECCcchHHhHH---H-HhcCCCEEEechHHHHHHH--HccCCCcCCcceeecchhhHHhccC--cHHHHHH---
Q 015454 130 IQAHACVGGKSVGEDIR---K-LEHGVHVVSGTPGRVCDMI--KRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYD--- 198 (406)
Q Consensus 130 ~~~~~~~~~~~~~~~~~---~-~~~~~~iii~T~~~l~~~l--~~~~~~~~~~~~vV~DE~h~~~~~~--~~~~~~~--- 198 (406)
+....+.++....+... . .....+|+++||+.+.... .........+++||+||||.+.+++ |+..+..
T Consensus 76 i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 76 IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 55556666555443221 1 2344799999999875321 1111145678999999999998775 4444433
Q ss_pred HHHhCCCCceEEEEEecCChHHHHHHHhcCC--CCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHh-hcCCcce
Q 015454 199 VYRYLPPDLQVVLISATLPHEILEMTTKFMT--DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-TLTITQA 275 (406)
Q Consensus 199 ~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~k~ 275 (406)
+...+ +..+++++|||+++.....+...+. .+..... ....+++. +............+..++. .....++
T Consensus 156 l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---s~~r~nl~--~~v~~~~~~~~~~l~~~l~~~~~~~~~ 229 (470)
T TIGR00614 156 LKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCT---SFDRPNLY--YEVRRKTPKILEDLLRFIRKEFKGKSG 229 (470)
T ss_pred HHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC---CCCCCCcE--EEEEeCCccHHHHHHHHHHHhcCCCce
Confidence 34444 4677999999999887766655443 3332221 12223332 2222222234555666665 4444567
Q ss_pred EEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhh
Q 015454 276 VIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNREL 355 (406)
Q Consensus 276 lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~ 355 (406)
||||++++.++.+++.|...|+.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+++.|.+...
T Consensus 230 IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~ 309 (470)
T TIGR00614 230 IIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMES 309 (470)
T ss_pred EEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhccCCCCceeEEEEeccCcHHHHHHHH
Q 015454 356 YIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 388 (406)
Q Consensus 356 ~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~ 388 (406)
|.||+||+||.|++|.+++++.+.|...++.+.
T Consensus 310 y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 310 YYQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred HHhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 999999999999999999999998877666554
No 34
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.7e-49 Score=370.77 Aligned_cols=382 Identities=33% Similarity=0.571 Sum_probs=350.2
Q ss_pred ceeeccCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc---
Q 015454 21 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT--- 97 (406)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~--- 97 (406)
+......-+.+..+|+..|++..++..+++.||..|+++|.+|||+|+.|+++|.+|-||||||++|++|++.++..
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~ 432 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP 432 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC
Confidence 55556788899999999999999999999999999999999999999999999999999999999999999977733
Q ss_pred --CCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCC
Q 015454 98 --SSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (406)
Q Consensus 98 --~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~ 175 (406)
...|+.++|++||++|+.|+.+++.+|+..+++.+..++|+....+.+..+..+..|+|+||+++...+-.+.-...+
T Consensus 433 ~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtn 512 (997)
T KOG0334|consen 433 LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTN 512 (997)
T ss_pred hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccc
Confidence 234788999999999999999999999999999999999999999999999999999999999999887655444444
Q ss_pred ---cceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEE
Q 015454 176 ---IKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA 252 (406)
Q Consensus 176 ---~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (406)
..++|+||++.+.+.+|..+...+++.+++..|.+++|||.+..+.......+..|+.+.+.....-...+.+.+..
T Consensus 513 lrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V 592 (997)
T KOG0334|consen 513 LRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRV 592 (997)
T ss_pred ccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEE
Confidence 45999999999999999998888999999999999999999998888888888899998888888888888888888
Q ss_pred ecccccHHHHHHHHHhhcC-CcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 015454 253 VEREEWKFDTLCDLYDTLT-ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV 331 (406)
Q Consensus 253 ~~~~~~~~~~l~~~~~~~~-~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~ 331 (406)
+...+.++..|..++..+. ..++||||.+.+.|..+.+.|.+.|+.+..+||+.++.+|...+++|+++.+.+||+|+.
T Consensus 593 ~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsv 672 (997)
T KOG0334|consen 593 CAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSV 672 (997)
T ss_pred ecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhh
Confidence 8867779998888887654 469999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccc
Q 015454 332 WARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNV 402 (406)
Q Consensus 332 ~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (406)
+.+|+|++.+..||.|+.|.-..+|.+|.||+||.|+.|.+++|+.+.+.++..+|.+++.......|..|
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l 743 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLL 743 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999987777777554
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=7e-48 Score=345.12 Aligned_cols=350 Identities=31% Similarity=0.590 Sum_probs=325.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCc
Q 015454 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~ 110 (406)
....|+.+.|...+...|+..+|..|++.|..|+|.+..+.+.|+++..|+|||++|...++..+.......+.+|++||
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PT 102 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPT 102 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecc
Confidence 34678999999999999999999999999999999999999999999999999999999998888877778899999999
Q ss_pred HHHHHHHHHHHHHhcc-CcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhc
Q 015454 111 RELATQTEKVILAIGD-FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (406)
Q Consensus 111 ~~l~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~ 189 (406)
++++.|+.+.+.+++. ..+.....+.||+....+...+. .++|+|+||+++..+++...++.++++++|+|||+.+.+
T Consensus 103 REiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~ 181 (980)
T KOG4284|consen 103 REIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMD 181 (980)
T ss_pred hhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhc
Confidence 9999999999999986 46888899999999888777664 478999999999999999999999999999999999988
Q ss_pred -cCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEeccc-------ccHHH
Q 015454 190 -RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVERE-------EWKFD 261 (406)
Q Consensus 190 -~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 261 (406)
..|...+.-+++.+|...|++++|||.+..+...+..++.+|..+........+-++++++...... ..++.
T Consensus 182 t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq 261 (980)
T KOG4284|consen 182 TESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQ 261 (980)
T ss_pred hhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHH
Confidence 6688999999999999999999999999999999999999999999888888889999998877665 33678
Q ss_pred HHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCC
Q 015454 262 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQV 341 (406)
Q Consensus 262 ~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 341 (406)
.|..++++.+..+.||||+....|+-++.+|...|+.+.++.|.|++.+|..+++.++.-.++|||+|+...+|+|-+.+
T Consensus 262 ~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~v 341 (980)
T KOG4284|consen 262 KLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNV 341 (980)
T ss_pred HHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCcccc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcH
Q 015454 342 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 381 (406)
Q Consensus 342 ~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 381 (406)
+.||..++|.+..+|.||+||+||.|-.|-++.|+....+
T Consensus 342 NLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 342 NLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred ceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999887654
No 36
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.7e-46 Score=361.02 Aligned_cols=320 Identities=20% Similarity=0.350 Sum_probs=250.1
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
+||..++|+|.++++.++.|+++++.+|||+|||++|++|++.. ...++|++|+++|+.|+.+.+...+ +
T Consensus 21 fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~~l~~~g----i 90 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVDQLLANG----V 90 (607)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHHHHHHcC----C
Confidence 69999999999999999999999999999999999999998754 2368999999999999999988754 4
Q ss_pred eEEEEECCcchHHhHHH----HhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC--cHHHH---HHHHH
Q 015454 131 QAHACVGGKSVGEDIRK----LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQI---YDVYR 201 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~--~~~~~---~~~~~ 201 (406)
....+.++....+.... .....+++++||+++........+...++++||+||||.+..++ |+..+ ..+..
T Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~ 170 (607)
T PRK11057 91 AAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQ 170 (607)
T ss_pred cEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHH
Confidence 55555555544433221 22347899999999874222222334568999999999998875 44433 33444
Q ss_pred hCCCCceEEEEEecCChHHHHHHHhcCC--CCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEe
Q 015454 202 YLPPDLQVVLISATLPHEILEMTTKFMT--DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFC 279 (406)
Q Consensus 202 ~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~ 279 (406)
.+ +..+++++|||+++.....+...+. .+.... .....+++. +..... ......+..++......++||||
T Consensus 171 ~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~---~~~~r~nl~--~~v~~~-~~~~~~l~~~l~~~~~~~~IIFc 243 (607)
T PRK11057 171 RF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI---SSFDRPNIR--YTLVEK-FKPLDQLMRYVQEQRGKSGIIYC 243 (607)
T ss_pred hC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE---CCCCCCcce--eeeeec-cchHHHHHHHHHhcCCCCEEEEE
Confidence 44 4677999999999877665554432 332222 112223322 222222 22455666777777778999999
Q ss_pred cchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhh
Q 015454 280 NTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR 359 (406)
Q Consensus 280 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~ 359 (406)
++++.++.+++.|...|+.+..+||+++..+|..++++|.+|+.+|||||+++++|+|+|++++||+++.|.|...|.|+
T Consensus 244 ~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr 323 (607)
T PRK11057 244 NSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQE 323 (607)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCceeEEEEeccCcHHHHHHH
Q 015454 360 IGRSGRFGRKGVAINFVKNDDIKILRDI 387 (406)
Q Consensus 360 ~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 387 (406)
+||+||.|.+|.+++++++.|...++.+
T Consensus 324 ~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 324 TGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred hhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 9999999999999999998876655444
No 37
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-48 Score=328.34 Aligned_cols=368 Identities=31% Similarity=0.519 Sum_probs=338.0
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC-CCceeEEEEcC
Q 015454 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSP 109 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~-~~~~~~lil~P 109 (406)
..-.|..+||+..+.++....||..|+|.|++.+|.++++++++-.+-||||||.++++|++..+... ..+.++++++|
T Consensus 19 g~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsp 98 (529)
T KOG0337|consen 19 GSGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSP 98 (529)
T ss_pred CCCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccC
Confidence 35779999999999999999999999999999999999999999999999999999999999887543 45678999999
Q ss_pred cHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhc
Q 015454 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (406)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~ 189 (406)
+++|+.|..+.++.++..+++....+.|+...++++..+..++||+++||.++.+..-...+.++.+.+|||||++.+..
T Consensus 99 treLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfe 178 (529)
T KOG0337|consen 99 TRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFE 178 (529)
T ss_pred cHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHh
Confidence 99999999999999999999999999999999999999998999999999999988777778889999999999999999
Q ss_pred cCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhh
Q 015454 190 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 269 (406)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (406)
.+|.+++..++..++...|.+++|||++..+.++.+..+.+|..+..+.+....+.....+..+...+ +...|..++..
T Consensus 179 mgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~-K~aaLl~il~~ 257 (529)
T KOG0337|consen 179 MGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE-KEAALLSILGG 257 (529)
T ss_pred hhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH-HHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999998887777766666676766666665 66666666654
Q ss_pred c-CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEec
Q 015454 270 L-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYD 348 (406)
Q Consensus 270 ~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 348 (406)
. .+++++||+.+..+++.+...|...|+.+..++|.+++..|..-+.+|..++..++|.|+.+.+|+|+|-.+.||.++
T Consensus 258 ~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd 337 (529)
T KOG0337|consen 258 RIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYD 337 (529)
T ss_pred cccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccccc
Confidence 4 345899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCC
Q 015454 349 LPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMP 399 (406)
Q Consensus 349 ~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (406)
.|.+...|.+|+||+.|.|+.|.++.++.+++..++-++..++...+....
T Consensus 338 ~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~ 388 (529)
T KOG0337|consen 338 FPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAI 388 (529)
T ss_pred CCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeecc
Confidence 999999999999999999999999999999999999999999987765443
No 38
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=5.1e-46 Score=359.18 Aligned_cols=323 Identities=21% Similarity=0.315 Sum_probs=255.8
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
+||..+++.|.++++.++.|+++++++|||+|||++|++|++.. +..++|++|+++|+.|+.+.+..++ +
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~~g----i 78 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRAAG----V 78 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHcC----C
Confidence 79999999999999999999999999999999999999988743 3358999999999999999998753 5
Q ss_pred eEEEEECCcchHHhHHH----HhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC--cHHHHH---HHHH
Q 015454 131 QAHACVGGKSVGEDIRK----LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIY---DVYR 201 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~--~~~~~~---~~~~ 201 (406)
.+..+.++....+.... .....+|+++||+++............++++||+||||.+..++ |+..+. .+..
T Consensus 79 ~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~ 158 (591)
T TIGR01389 79 AAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAE 158 (591)
T ss_pred cEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHH
Confidence 66667776655443321 23558999999999875433334455679999999999998765 444443 3444
Q ss_pred hCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecc
Q 015454 202 YLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT 281 (406)
Q Consensus 202 ~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~ 281 (406)
.++.. +++++|||+++.....+...+..+...... .....+++. +.... ...+...+..++......++||||++
T Consensus 159 ~~~~~-~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~nl~--~~v~~-~~~~~~~l~~~l~~~~~~~~IIf~~s 233 (591)
T TIGR01389 159 RFPQV-PRIALTATADAETRQDIRELLRLADANEFI-TSFDRPNLR--FSVVK-KNNKQKFLLDYLKKHRGQSGIIYASS 233 (591)
T ss_pred hCCCC-CEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCCCCCcE--EEEEe-CCCHHHHHHHHHHhcCCCCEEEEECc
Confidence 55444 499999999998877776665422111111 112222322 22222 23356677777777767799999999
Q ss_pred hhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhh
Q 015454 282 KRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIG 361 (406)
Q Consensus 282 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~G 361 (406)
++.++.+++.|...|+.+..+||+++.++|..+++.|.+|+++|||||+++++|+|+|++++||+++.|.|...|.|++|
T Consensus 234 r~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~G 313 (591)
T TIGR01389 234 RKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAG 313 (591)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCceeEEEEeccCcHHHHHHHH
Q 015454 362 RSGRFGRKGVAINFVKNDDIKILRDIE 388 (406)
Q Consensus 362 R~~R~~~~~~~~~~~~~~~~~~~~~~~ 388 (406)
|+||.|+++.|++++...|...++.+.
T Consensus 314 RaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 314 RAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred cccCCCCCceEEEecCHHHHHHHHHHH
Confidence 999999999999999887765544443
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.4e-46 Score=369.07 Aligned_cols=352 Identities=19% Similarity=0.296 Sum_probs=259.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHhHHh-hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 34 ~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~-i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
.|+++++++++.+.+.+.|+.+|+|+|.++++. +..|+|+++++|||||||+++.++++..+.. +.+++|++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHH
Confidence 478899999999999999999999999999998 7789999999999999999999999988753 457999999999
Q ss_pred HHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCc
Q 015454 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (406)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~ 192 (406)
|+.|.++.+.++.. .++.+..+.|+...... .....+|+|+||+++..++.+....++++++||+||+|.+.+.++
T Consensus 79 La~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 79 LASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcc
Confidence 99999999998753 46788888887654332 123579999999999988876555578899999999999988777
Q ss_pred HHHHHHHHHh---CCCCceEEEEEecCChHHHHHHHhcCCCCe--------EEE--ec-CCccccCCceEEEEEeccccc
Q 015454 193 KDQIYDVYRY---LPPDLQVVLISATLPHEILEMTTKFMTDPV--------KIL--VK-RDELTLEGIKQFFVAVEREEW 258 (406)
Q Consensus 193 ~~~~~~~~~~---~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~--------~~~--~~-~~~~~~~~~~~~~~~~~~~~~ 258 (406)
+..+..++.. ..+..|++++|||+++. ..+..++.... .+. .. ........ ............
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n~--~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~~~~~~~~ 231 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGNA--DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQREVEVPSKDD 231 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCCH--HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-ccccCCCccchH
Confidence 7666655433 35678999999999752 22223332111 000 00 00000000 000000011112
Q ss_pred HHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcC------------------------------------CceEEEe
Q 015454 259 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY------------------------------------NFTVSSM 302 (406)
Q Consensus 259 ~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~------------------------------------~~~~~~~ 302 (406)
....+...+. ..+++||||++++.++.++..|... ...+..+
T Consensus 232 ~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~h 309 (737)
T PRK02362 232 TLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFH 309 (737)
T ss_pred HHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEee
Confidence 2333333333 3478999999999998888777532 1358899
Q ss_pred ecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEE----ec-----CCCChhhhHhhhhhccCCCCc--ee
Q 015454 303 HGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----YD-----LPNNRELYIHRIGRSGRFGRK--GV 371 (406)
Q Consensus 303 ~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~-----~~~s~~~~~Q~~GR~~R~~~~--~~ 371 (406)
|+++++.+|..+++.|++|.++|||||+++++|+|+|..++||. ++ .|.+..+|.||+||+||.|.+ |.
T Consensus 310 Hagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~ 389 (737)
T PRK02362 310 HAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGE 389 (737)
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCce
Confidence 99999999999999999999999999999999999999998886 43 578899999999999999876 88
Q ss_pred EEEEeccCcHHHHHHHHHHHccccccC
Q 015454 372 AINFVKNDDIKILRDIEQYYSTQIDEM 398 (406)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (406)
+++++.+.+. .-+...+++..+...+
T Consensus 390 ~ii~~~~~~~-~~~~~~~~l~~~~~~i 415 (737)
T PRK02362 390 AVLLAKSYDE-LDELFERYIWADPEDV 415 (737)
T ss_pred EEEEecCchh-HHHHHHHHHhCCCCce
Confidence 8888876432 2222344554444333
No 40
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-46 Score=326.65 Aligned_cols=365 Identities=24% Similarity=0.422 Sum_probs=290.5
Q ss_pred CcccccccccCCCCHHHHHH----------HHHCCCCCChHHHHHhHHhhhc---------CCcEEEECCCCCChhhHhH
Q 015454 28 GVEAITSFDAMGIKDDLLRG----------IYQYGFEKPSAIQQRAVMPIIK---------GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 28 ~~~~~~~~~~~~l~~~i~~~----------l~~~~~~~l~~~Q~~~~~~i~~---------~~~~il~~~tGsGKT~~~~ 88 (406)
.......|+.+++++.+... +.+.++.++.|.|...++.++. .+++.+.||||||||++|.
T Consensus 122 ~~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~ 201 (620)
T KOG0350|consen 122 QNNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYV 201 (620)
T ss_pred CCCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeeh
Confidence 33444556777777766655 7778999999999999998854 4789999999999999999
Q ss_pred HHHHhhhccC-CCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcC-C----CEEEechHHH
Q 015454 89 LTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG-V----HVVSGTPGRV 162 (406)
Q Consensus 89 ~~i~~~~~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~iii~T~~~l 162 (406)
+|+.+.+... -+..+++|++|+++|+.|+++.+.+++...++.+..+.|..+...+...+.+. . ||+|+||++|
T Consensus 202 iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRL 281 (620)
T KOG0350|consen 202 IPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRL 281 (620)
T ss_pred hHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHH
Confidence 9999998654 45678999999999999999999999999999999999998888777666433 3 8999999999
Q ss_pred HHHHHc-cCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCC----------------------------------CCc
Q 015454 163 CDMIKR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP----------------------------------PDL 207 (406)
Q Consensus 163 ~~~l~~-~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~----------------------------------~~~ 207 (406)
.+++.+ ..+.+.+++++|+||++++.+..|...+..+..... +..
T Consensus 282 VDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l 361 (620)
T KOG0350|consen 282 VDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPL 361 (620)
T ss_pred HHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchh
Confidence 999985 678899999999999999988765544444433222 122
Q ss_pred eEEEEEecCChHHHHHHHhcCCCCeEEEecC----CccccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchh
Q 015454 208 QVVLISATLPHEILEMTTKFMTDPVKILVKR----DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKR 283 (406)
Q Consensus 208 ~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~ 283 (406)
..+.+|||+..+-.....-.+..|....+.. ....+..+.+.+..... ..+.-.+..++..++..++|+|+++.+
T Consensus 362 ~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~-~~kpl~~~~lI~~~k~~r~lcf~~S~~ 440 (620)
T KOG0350|consen 362 WKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEP-KFKPLAVYALITSNKLNRTLCFVNSVS 440 (620)
T ss_pred HhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeeccc-ccchHhHHHHHHHhhcceEEEEecchH
Confidence 3677788876554444444455553332221 11222333333333333 236777888889888899999999999
Q ss_pred hHHHHHHHHh----cCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhh
Q 015454 284 KVDWLTEKMR----GYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR 359 (406)
Q Consensus 284 ~~~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~ 359 (406)
.+.+++..|+ +...++..+.|.++.+.|...++.|..|++.+|||++++.+|+|+.+++.||.|++|.+...|+||
T Consensus 441 sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR 520 (620)
T KOG0350|consen 441 SANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHR 520 (620)
T ss_pred HHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHh
Confidence 9999988886 445667779999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCceeEEEEeccCcHHHHHHHHHHHcc
Q 015454 360 IGRSGRFGRKGVAINFVKNDDIKILRDIEQYYST 393 (406)
Q Consensus 360 ~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
+||++|.|+.|.++.+....+...+.++.+....
T Consensus 521 ~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 521 AGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred hcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 9999999999999999999988777776655433
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.4e-45 Score=366.69 Aligned_cols=334 Identities=19% Similarity=0.280 Sum_probs=245.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC------CCceeEEEEcCcHHH
Q 015454 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS------SREVQALILSPTREL 113 (406)
Q Consensus 40 l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~------~~~~~~lil~P~~~l 113 (406)
+++.+.+.+. .+|..|+++|.++++.+++|+|+++++|||||||+++++|++..+... .++.++||++|+++|
T Consensus 18 l~~~v~~~~~-~~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFK-EKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHH-HccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 5566655544 478899999999999999999999999999999999999999876431 235679999999999
Q ss_pred HHHHHHHHHH-------hc----cCc-ceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCC--CcCCccee
Q 015454 114 ATQTEKVILA-------IG----DFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL--RTRAIKLL 179 (406)
Q Consensus 114 ~~q~~~~~~~-------~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~--~~~~~~~v 179 (406)
+.|+.+.+.. +. ... ++.+...+|+....++.....++++|+|+||++|..++.+..+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876652 11 222 6778888999888777777777899999999999877755433 36789999
Q ss_pred ecchhhHHhccCcHHHH----HHHHHhCCCCceEEEEEecCChH--HHHHHHhcC----CCCeEEEecCCccccCCceEE
Q 015454 180 VLDESDEMLSRGFKDQI----YDVYRYLPPDLQVVLISATLPHE--ILEMTTKFM----TDPVKILVKRDELTLEGIKQF 249 (406)
Q Consensus 180 V~DE~h~~~~~~~~~~~----~~~~~~~~~~~~~i~lSAT~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 249 (406)
|+||+|.+.+...+..+ ..+....+...|++++|||+++. ...++.... ..+..+. .........+. .
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i~-v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDIK-V 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEE-ccCCCccceEE-E
Confidence 99999999876544433 33444444678999999999762 222222111 1111121 11110000000 0
Q ss_pred EEE------eccc---ccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcC------CceEEEeecCCCHHHHHHH
Q 015454 250 FVA------VERE---EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY------NFTVSSMHGDMPQKERDAI 314 (406)
Q Consensus 250 ~~~------~~~~---~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~ 314 (406)
... .... ......+..+++. .+++|||||++..++.++..|.+. +..+..+||++++++|..+
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~v 332 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEV 332 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHH
Confidence 000 0000 1122334444433 368999999999999999999762 4679999999999999999
Q ss_pred HHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCC-CCceeEEEEecc
Q 015454 315 MGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRF-GRKGVAINFVKN 378 (406)
Q Consensus 315 ~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-~~~~~~~~~~~~ 378 (406)
++.|++|++++||||+++++|+|+|++++||+++.|.+...|+||+||+||. |..+.+.++...
T Consensus 333 e~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 333 EEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999997 444555555443
No 42
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=4e-45 Score=347.54 Aligned_cols=350 Identities=19% Similarity=0.282 Sum_probs=275.1
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC-----CCceeEEEEcCcHHHH
Q 015454 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-----SREVQALILSPTRELA 114 (406)
Q Consensus 40 l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~-----~~~~~~lil~P~~~l~ 114 (406)
+++.+.+.+... |..||+.|.+|++.+.+|+|+++.||||||||.++++|+++.+... ..+..+||++|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 677888877776 8999999999999999999999999999999999999999988655 3457899999999999
Q ss_pred HHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccC--CCcCCcceeecchhhHHhccCc
Q 015454 115 TQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEMLSRGF 192 (406)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~--~~~~~~~~vV~DE~h~~~~~~~ 192 (406)
.++..++...+...++.+...+|++...++.+...++++|+|+||++|.-++.... -.+.++++||+||.|.+.....
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 99999999999999999999999999999989999999999999999987776532 3467899999999999986654
Q ss_pred HHHH----HHHHHhCCCCceEEEEEecCChHHHHHHHhcCC-C--CeEEEecCCccccCCceEEEEEec------ccccH
Q 015454 193 KDQI----YDVYRYLPPDLQVVLISATLPHEILEMTTKFMT-D--PVKILVKRDELTLEGIKQFFVAVE------REEWK 259 (406)
Q Consensus 193 ~~~~----~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 259 (406)
+.++ .++.+..+ ..|.+++|||..+. ....+++. . +..+.. ........+....-..+ .....
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~--~~varfL~g~~~~~~Iv~-~~~~k~~~i~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVGPP--EEVAKFLVGFGDPCEIVD-VSAAKKLEIKVISPVEDLIYDEELWAAL 242 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccCCH--HHHHHHhcCCCCceEEEE-cccCCcceEEEEecCCccccccchhHHH
Confidence 4333 34444434 89999999999763 33333333 2 222222 22111111111111111 11224
Q ss_pred HHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCC-ceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCC
Q 015454 260 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYN-FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDV 338 (406)
Q Consensus 260 ~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~ 338 (406)
...+..+++++ ..+|||+||+..++.++..|+..+ ..+..+||.++.+.|..++++|++|+.+++|||++++-|+|+
T Consensus 243 ~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 243 YERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 55666666766 379999999999999999999876 789999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCChhhhHhhhhhccCC-CCceeEEEEeccCc--HHHHHHHHHHHccccc
Q 015454 339 QQVSLVINYDLPNNRELYIHRIGRSGRF-GRKGVAINFVKNDD--IKILRDIEQYYSTQID 396 (406)
Q Consensus 339 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 396 (406)
.+++.||+++.|.+++.++||+||+|+. +..++++++..+.+ .+..--....+.-.++
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le 381 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLE 381 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999986 66678887777631 1333333444444444
No 43
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-46 Score=331.08 Aligned_cols=375 Identities=31% Similarity=0.462 Sum_probs=324.9
Q ss_pred ccccccccc----CCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC-----C
Q 015454 29 VEAITSFDA----MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-----S 99 (406)
Q Consensus 29 ~~~~~~~~~----~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~-----~ 99 (406)
+.+..+|.+ ...++.++..+...+|..|++.|.++++-++.+.+++.++|||||||++|.+|++..+... .
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~ 207 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHK 207 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCc
Confidence 445556665 5578899999999999999999999999999999999999999999999999999888432 4
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhc--cCcceeEEEEECCcchHHh-HHHHhcCCCEEEechHHHHHHHHccC--CCcC
Q 015454 100 REVQALILSPTRELATQTEKVILAIG--DFINIQAHACVGGKSVGED-IRKLEHGVHVVSGTPGRVCDMIKRKT--LRTR 174 (406)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iii~T~~~l~~~l~~~~--~~~~ 174 (406)
.+-+++|+.|+++|+.|.+.++.++. ...+..+..+......... .......++++|.||.++...+.... .++.
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~ 287 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLS 287 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhh
Confidence 56789999999999999999999988 4555544444332111111 11122337899999999998887755 6788
Q ss_pred CcceeecchhhHHhcc-CcHHHHHHHHHhCC-CCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEE
Q 015454 175 AIKLLVLDESDEMLSR-GFKDQIYDVYRYLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA 252 (406)
Q Consensus 175 ~~~~vV~DE~h~~~~~-~~~~~~~~~~~~~~-~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (406)
++.++|+||++.+... .|..++..++..+. ++.++-++|||.+....+++......+..+.+...+.....+.+-...
T Consensus 288 ~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF 367 (593)
T KOG0344|consen 288 KVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVF 367 (593)
T ss_pred eeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhhee
Confidence 9999999999999988 78888888877764 456678899999999999999999999998888777777777777777
Q ss_pred ecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHH-hcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 015454 253 VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM-RGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV 331 (406)
Q Consensus 253 ~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~ 331 (406)
+.....+.-.+..+++.....+++||+++.+.+..+...| .--++++.++||..++.+|++.+++|+.|++.+||||++
T Consensus 368 ~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdl 447 (593)
T KOG0344|consen 368 CGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDL 447 (593)
T ss_pred eecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhh
Confidence 8888889999999999888889999999999999999999 666889999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCcccc
Q 015454 332 WARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVA 403 (406)
Q Consensus 332 ~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (406)
+++|+|+.+++.||.+|.|.+...|++|+||+||.|+.|.++.|+.+.|...++.+.+.+....-++|+|..
T Consensus 448 l~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~m 519 (593)
T KOG0344|consen 448 LARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKIM 519 (593)
T ss_pred hhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998764
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.5e-44 Score=355.42 Aligned_cols=336 Identities=17% Similarity=0.240 Sum_probs=255.9
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHhHHh-hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 34 ~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~-i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
.|+++++++.+.+.+.+.|+..|+|+|.++++. +..|+++++++|||||||+++.++++..+... +.+++|++|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHH
Confidence 477889999999999999999999999999986 78899999999999999999999998876543 458999999999
Q ss_pred HHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCc
Q 015454 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (406)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~ 192 (406)
|+.|+++.+..+. ..++.+..+.|+......+ ...++|+|+||+++..++.+....++++++||+||+|.+.+.++
T Consensus 80 La~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r 155 (720)
T PRK00254 80 LAEEKYREFKDWE-KLGLRVAMTTGDYDSTDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR 155 (720)
T ss_pred HHHHHHHHHHHHh-hcCCEEEEEeCCCCCchhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc
Confidence 9999999998764 4578888888876654322 24579999999999988876655678899999999999988888
Q ss_pred HHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccC-Cce-EEEEEeccc------ccHHHHHH
Q 015454 193 KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLE-GIK-QFFVAVERE------EWKFDTLC 264 (406)
Q Consensus 193 ~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~------~~~~~~l~ 264 (406)
+..+..++..+....|++++|||+++. ..+..++..... .......... .+. +.+...... ......+.
T Consensus 156 g~~le~il~~l~~~~qiI~lSATl~n~--~~la~wl~~~~~-~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (720)
T PRK00254 156 GATLEMILTHMLGRAQILGLSATVGNA--EELAEWLNAELV-VSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVY 232 (720)
T ss_pred hHHHHHHHHhcCcCCcEEEEEccCCCH--HHHHHHhCCccc-cCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHH
Confidence 888888888888889999999999752 223334432211 1110110000 000 000001110 11122333
Q ss_pred HHHhhcCCcceEEEecchhhHHHHHHHHhc---------------------------------CCceEEEeecCCCHHHH
Q 015454 265 DLYDTLTITQAVIFCNTKRKVDWLTEKMRG---------------------------------YNFTVSSMHGDMPQKER 311 (406)
Q Consensus 265 ~~~~~~~~~k~lif~~~~~~~~~l~~~l~~---------------------------------~~~~~~~~~~~~~~~~r 311 (406)
..++ ..+++||||++++.++.++..|.. ...++..+|+++++++|
T Consensus 233 ~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR 310 (720)
T PRK00254 233 DAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTER 310 (720)
T ss_pred HHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHH
Confidence 4444 246899999999998776655532 12358899999999999
Q ss_pred HHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEE-------ecC-CCChhhhHhhhhhccCCC--CceeEEEEeccCc
Q 015454 312 DAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN-------YDL-PNNRELYIHRIGRSGRFG--RKGVAINFVKNDD 380 (406)
Q Consensus 312 ~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~-------~~~-~~s~~~~~Q~~GR~~R~~--~~~~~~~~~~~~~ 380 (406)
..+++.|++|.++|||||+++++|+|+|..++||. ++. +.+..+|.||+||+||.| ..|.+++++...+
T Consensus 311 ~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 311 VLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999999999999999999999999998884 232 235678999999999975 5589999987655
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.2e-42 Score=340.17 Aligned_cols=321 Identities=19% Similarity=0.225 Sum_probs=246.2
Q ss_pred CCHHHHHHHHH-CCCCCChHHHHHhHHhhhcC------CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 40 IKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 40 l~~~i~~~l~~-~~~~~l~~~Q~~~~~~i~~~------~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
.+..+...+.. ++| .|++.|.++++.+..+ .+.+++||||||||.+++.+++..+.. +.+++|++||++
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~qvlvLvPT~~ 511 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GKQVAVLVPTTL 511 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CCeEEEEeCcHH
Confidence 34455555544 577 6999999999999874 689999999999999999998887754 357999999999
Q ss_pred HHHHHHHHHHHhccCcceeEEEEECCcchHHhH---HHHhc-CCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHh
Q 015454 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDI---RKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (406)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~ 188 (406)
|+.|+++.++++....++.+..+.++.+..+.. ..+.. .++|+|+||..+ .....+.+++++|+||+|.+.
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfg 586 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFG 586 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccc
Confidence 999999999998777778888887776544332 22333 589999999533 245667889999999999852
Q ss_pred ccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHh
Q 015454 189 SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (406)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 268 (406)
......++.++.+.++++||||+.+....+......++..+...+.. ...+..++..... ......+...+.
T Consensus 587 -----v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~-~~i~~~i~~el~ 658 (926)
T TIGR00580 587 -----VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDP-ELVREAIRRELL 658 (926)
T ss_pred -----hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCH-HHHHHHHHHHHH
Confidence 23344555667788999999999887666655555555444332221 1223333332211 111222222222
Q ss_pred hcCCcceEEEecchhhHHHHHHHHhcC--CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEE
Q 015454 269 TLTITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN 346 (406)
Q Consensus 269 ~~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~ 346 (406)
.+++++|||++++.++.+++.|+.. +.++..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||+
T Consensus 659 --~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi 736 (926)
T TIGR00580 659 --RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII 736 (926)
T ss_pred --cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE
Confidence 3478999999999999999999874 678999999999999999999999999999999999999999999999999
Q ss_pred ecCCC-ChhhhHhhhhhccCCCCceeEEEEeccC
Q 015454 347 YDLPN-NRELYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 347 ~~~~~-s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
++.+. +...|.|+.||+||.|+.|.|++++.+.
T Consensus 737 ~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 737 ERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 98864 5678999999999999999999998754
No 46
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.2e-43 Score=343.28 Aligned_cols=344 Identities=19% Similarity=0.268 Sum_probs=249.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHH
Q 015454 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (406)
Q Consensus 34 ~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l 113 (406)
.|+++++++.+.+.+...++. |+++|.++++.+..++++++++|||||||+++.++++..+.. +.+++|++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHH
Confidence 477889999999999988885 999999999999999999999999999999999999887754 3579999999999
Q ss_pred HHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcH
Q 015454 114 ATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK 193 (406)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~ 193 (406)
+.|.++.+.++. ..+..+....|+...... .....+|+|+||+++..++.+....+.++++||+||+|.+.+.+++
T Consensus 78 a~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg 153 (674)
T PRK01172 78 AMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRG 153 (674)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCcc
Confidence 999999998764 456777777776554322 1245799999999998888776666788999999999999877666
Q ss_pred HHHHHHHH---hCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceE-EE----EEecccccHHHHHHH
Q 015454 194 DQIYDVYR---YLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQ-FF----VAVEREEWKFDTLCD 265 (406)
Q Consensus 194 ~~~~~~~~---~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~l~~ 265 (406)
..+..++. ..+++.|++++|||+++. ..+..++..... .. . ..+..... .. ...+........+..
T Consensus 154 ~~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~~~~~-~~--~-~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~ 227 (674)
T PRK01172 154 PTLETVLSSARYVNPDARILALSATVSNA--NELAQWLNASLI-KS--N-FRPVPLKLGILYRKRLILDGYERSQVDINS 227 (674)
T ss_pred HHHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhCCCcc-CC--C-CCCCCeEEEEEecCeeeecccccccccHHH
Confidence 66655533 445678999999999753 223334432211 00 0 00111110 00 000000001111222
Q ss_pred HHhh--cCCcceEEEecchhhHHHHHHHHhcC-------------------------CceEEEeecCCCHHHHHHHHHHH
Q 015454 266 LYDT--LTITQAVIFCNTKRKVDWLTEKMRGY-------------------------NFTVSSMHGDMPQKERDAIMGEF 318 (406)
Q Consensus 266 ~~~~--~~~~k~lif~~~~~~~~~l~~~l~~~-------------------------~~~~~~~~~~~~~~~r~~~~~~f 318 (406)
++.. ...+++||||++++.++.++..|... ..++..+||+++.++|..+++.|
T Consensus 228 ~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f 307 (674)
T PRK01172 228 LIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMF 307 (674)
T ss_pred HHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHH
Confidence 2222 23468999999999999998887542 12477899999999999999999
Q ss_pred hcCCCcEEEEcCcccCCCCCCCCCEEEEecC---------CCChhhhHhhhhhccCCCCc--eeEEEEeccCcHHHHHHH
Q 015454 319 RSGTTRVLITTDVWARGLDVQQVSLVINYDL---------PNNRELYIHRIGRSGRFGRK--GVAINFVKNDDIKILRDI 387 (406)
Q Consensus 319 ~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~---------~~s~~~~~Q~~GR~~R~~~~--~~~~~~~~~~~~~~~~~~ 387 (406)
++|.++|||||+++++|+|+|+.. ||+.+. +.+..+|.||+||+||.|.+ |.+++++...+ ....+
T Consensus 308 ~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~--~~~~~ 384 (674)
T PRK01172 308 RNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA--SYDAA 384 (674)
T ss_pred HcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc--cHHHH
Confidence 999999999999999999999854 444332 45788999999999999854 66777766543 12334
Q ss_pred HHHHccc
Q 015454 388 EQYYSTQ 394 (406)
Q Consensus 388 ~~~~~~~ 394 (406)
.+++...
T Consensus 385 ~~~l~~~ 391 (674)
T PRK01172 385 KKYLSGE 391 (674)
T ss_pred HHHHcCC
Confidence 5555433
No 47
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.3e-42 Score=317.33 Aligned_cols=327 Identities=22% Similarity=0.322 Sum_probs=258.4
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
+|+..+++-|.+++..+++++++++..|||+|||++|.+|.+-. .+.+|+|+|..+|..++.+.++..+ +
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l~~~G----i 82 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQLEAAG----I 82 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHHHHcC----c
Confidence 58999999999999999999999999999999999999998765 2369999999999999999998866 5
Q ss_pred eEEEEECCcchHHhHH---HHhc-CCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC--cHHHHHH---HHH
Q 015454 131 QAHACVGGKSVGEDIR---KLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYD---VYR 201 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~---~~~~-~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~--~~~~~~~---~~~ 201 (406)
.+..+.+..+..+... .+.. ..+++..+|++|..-...+.+....+.++++||||.++.|+ |+..+.. +..
T Consensus 83 ~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~ 162 (590)
T COG0514 83 RAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRA 162 (590)
T ss_pred eeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHh
Confidence 6666655555444432 2222 37899999999975433333335668899999999999997 7666554 455
Q ss_pred hCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecc
Q 015454 202 YLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT 281 (406)
Q Consensus 202 ~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~ 281 (406)
.++ ++.++++|||.++.....+...+......... ...+.+++............+...+.. ......+..||||.|
T Consensus 163 ~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~-~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~s 239 (590)
T COG0514 163 GLP-NPPVLALTATATPRVRDDIREQLGLQDANIFR-GSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLT 239 (590)
T ss_pred hCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEE-ecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEee
Confidence 554 67799999999999998888766543321111 223344444333333322223332222 124444678999999
Q ss_pred hhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhh
Q 015454 282 KRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIG 361 (406)
Q Consensus 282 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~G 361 (406)
++.++.+++.|...|+.+..||++|+.++|..+.++|..++.+|+|||.++++|||-|++++|+|++.|.|...|.|-+|
T Consensus 240 Rk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~G 319 (590)
T COG0514 240 RKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETG 319 (590)
T ss_pred HHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCceeEEEEeccCcHHHHHHHHHH
Q 015454 362 RSGRFGRKGVAINFVKNDDIKILRDIEQY 390 (406)
Q Consensus 362 R~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (406)
|+||+|.+..+++++.+.|....+.+.+.
T Consensus 320 RAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 320 RAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred hccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999987665555444
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.4e-41 Score=339.72 Aligned_cols=319 Identities=18% Similarity=0.198 Sum_probs=248.0
Q ss_pred HHHHHHHHHCCCCCChHHHHHhHHhhhcC------CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHH
Q 015454 42 DDLLRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (406)
Q Consensus 42 ~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~------~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~ 115 (406)
++..+...+++| .|++.|.++++.++.+ .+.+++++||+|||.+++.++...+. .+.+++|++||++|+.
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA~ 663 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLAQ 663 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHH
Confidence 344455566778 7999999999999886 78999999999999998877766653 3567999999999999
Q ss_pred HHHHHHHHhccCcceeEEEEECCcchHHhHHHH---h-cCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC
Q 015454 116 QTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (406)
Q Consensus 116 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~ 191 (406)
|+++.+.+.....++.+..+.++.+..++...+ . ..++|+|+||+.+. ....+.+++++|+||+|.+.
T Consensus 664 Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG--- 735 (1147)
T PRK10689 664 QHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFG--- 735 (1147)
T ss_pred HHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcc---
Confidence 999999987666677787788777665554332 2 35899999996442 34556789999999999972
Q ss_pred cHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcC
Q 015454 192 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 271 (406)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 271 (406)
+ .....++.++++.|++++|||+.+....+....+.++..+...+.. ...+..++........+...+..+.+
T Consensus 736 ~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~el~r--- 808 (1147)
T PRK10689 736 V--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILREILR--- 808 (1147)
T ss_pred h--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHHHhc---
Confidence 2 2234456677889999999999888777776666676655433222 12333333333222222233333332
Q ss_pred CcceEEEecchhhHHHHHHHHhcC--CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL 349 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 349 (406)
.++++||||+++.++.+++.|.+. +.++..+||+|++.+|.+++.+|++|+.+|||||+++++|+|+|++++||+...
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~a 888 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecC
Confidence 368999999999999999999876 678999999999999999999999999999999999999999999999997665
Q ss_pred C-CChhhhHhhhhhccCCCCceeEEEEeccC
Q 015454 350 P-NNRELYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 350 ~-~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
. .+...|.|+.||+||.|+.|.|++++.+.
T Consensus 889 d~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred CCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 4 46788999999999999999999998653
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4.2e-41 Score=327.07 Aligned_cols=318 Identities=21% Similarity=0.273 Sum_probs=236.3
Q ss_pred HHHHHHH-HHCCCCCChHHHHHhHHhhhcC------CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHH
Q 015454 42 DDLLRGI-YQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (406)
Q Consensus 42 ~~i~~~l-~~~~~~~l~~~Q~~~~~~i~~~------~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~ 114 (406)
..+.+.+ ...+| .|++.|.++++.+..+ .+.+++||||||||.+++++++..+.. +.+++|++||++|+
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA 323 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILA 323 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHH
Confidence 3444444 34566 7999999999999886 479999999999999999999887743 56799999999999
Q ss_pred HHHHHHHHHhccCcceeEEEEECCcchHHhHH---HHhc-CCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhcc
Q 015454 115 TQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (406)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~ 190 (406)
.|+++.++++....++.+..++|+.+..++.. .+.. .++|+|+||+.+.. ...+.+++++|+||+|.+...
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~ 398 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE 398 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH
Confidence 99999999998888899999999987544432 3333 58999999977643 345678999999999986432
Q ss_pred CcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhc
Q 015454 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (406)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (406)
. ...+......+++++||||+.+...........+...+. ........+...+..........+.+...+.
T Consensus 399 q-----r~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~--~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~~-- 469 (681)
T PRK10917 399 Q-----RLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVID--ELPPGRKPITTVVIPDSRRDEVYERIREEIA-- 469 (681)
T ss_pred H-----HHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEe--cCCCCCCCcEEEEeCcccHHHHHHHHHHHHH--
Confidence 2 222333345688999999998765544332222222211 1111122233333322222222233333332
Q ss_pred CCcceEEEecchh--------hHHHHHHHHhcC--CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCC
Q 015454 271 TITQAVIFCNTKR--------KVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340 (406)
Q Consensus 271 ~~~k~lif~~~~~--------~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 340 (406)
...+++|||+.++ .+..+++.|... ++++..+||+++..+|..++++|++|+.+|||||+++++|+|+|+
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~ 549 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPN 549 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCC
Confidence 3368999999643 455667777654 468999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCC-ChhhhHhhhhhccCCCCceeEEEEec
Q 015454 341 VSLVINYDLPN-NRELYIHRIGRSGRFGRKGVAINFVK 377 (406)
Q Consensus 341 ~~~vi~~~~~~-s~~~~~Q~~GR~~R~~~~~~~~~~~~ 377 (406)
+++||+++.+. ....+.|+.||+||.|..|.|++++.
T Consensus 550 v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 550 ATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99999999986 56888999999999999999999995
No 50
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.9e-41 Score=294.74 Aligned_cols=322 Identities=20% Similarity=0.262 Sum_probs=244.8
Q ss_pred CCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeE
Q 015454 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (406)
Q Consensus 53 ~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (406)
..++|.||.......+.+ |++++.|||-|||+++++.+.+.+...+ + ++|+++||+-|+.|+++.+.+......-.+
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i 89 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-G-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEI 89 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC-C-eEEEecCCchHHHHHHHHHHHHhCCChhhe
Confidence 347899999999887775 8999999999999999988887765543 3 899999999999999999999887777778
Q ss_pred EEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEE
Q 015454 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (406)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~l 212 (406)
..+.|.....++...+ ...+|+|+||+.+.+-+..+..+..++.++||||||+.........+...+.....++.+++|
T Consensus 90 ~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgL 168 (542)
T COG1111 90 AALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGL 168 (542)
T ss_pred eeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEE
Confidence 8888888877665544 446999999999999999999999999999999999988776555666656666678889999
Q ss_pred EecCChHHHH---HHHhcCCCCeEEEecCCccccC---CceEEE------------------------------------
Q 015454 213 SATLPHEILE---MTTKFMTDPVKILVKRDELTLE---GIKQFF------------------------------------ 250 (406)
Q Consensus 213 SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------------------------------ 250 (406)
||||..+... .+..+.-+.+.+..+.+..-.+ .....+
T Consensus 169 TASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~ 248 (542)
T COG1111 169 TASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESS 248 (542)
T ss_pred ecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceecc
Confidence 9998543222 1222111111111100000000 000000
Q ss_pred --------------------------------------------------------------------------------
Q 015454 251 -------------------------------------------------------------------------------- 250 (406)
Q Consensus 251 -------------------------------------------------------------------------------- 250 (406)
T Consensus 249 ~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~ 328 (542)
T COG1111 249 SPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADP 328 (542)
T ss_pred CcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcCh
Confidence
Q ss_pred ------------EEecccccHHHHHHHHH----hhcCCcceEEEecchhhHHHHHHHHhcCCceEE--Ee-------ecC
Q 015454 251 ------------VAVEREEWKFDTLCDLY----DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVS--SM-------HGD 305 (406)
Q Consensus 251 ------------~~~~~~~~~~~~l~~~~----~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~--~~-------~~~ 305 (406)
........|++.+..++ +...+.+++||++.++.++.+.+.|.+.+..+. .+ ..+
T Consensus 329 ~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~G 408 (542)
T COG1111 329 YFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKG 408 (542)
T ss_pred hhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccc
Confidence 00000011233333333 233346899999999999999999999887764 22 257
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccC
Q 015454 306 MPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 306 ~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
|++.+..+++++|+.|+++|||||++.++|+|+|+++.||+|++..|...++||.||+||. +.|.+++++...
T Consensus 409 MsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 409 MSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred cCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999 789999998876
No 51
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.8e-41 Score=323.15 Aligned_cols=309 Identities=23% Similarity=0.272 Sum_probs=233.5
Q ss_pred CCCCCChHHHHHhHHhhhcCC-cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCc-
Q 015454 51 YGFEKPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI- 128 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~-~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~- 128 (406)
.||. |+|||.++++.++.|+ ++++.+|||||||.++..+++..........+.++++|+++|+.|.++.+.+++...
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~ 90 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLP 90 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhc
Confidence 3785 9999999999999998 578889999999987665555332222223345567799999999999998887644
Q ss_pred ----------------------ceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc-c--------CC---CcC
Q 015454 129 ----------------------NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-K--------TL---RTR 174 (406)
Q Consensus 129 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~-~--------~~---~~~ 174 (406)
.+.+..++||.+...++..+..+++|+|+|++.+.+-... . .+ .+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~ 170 (844)
T TIGR02621 91 DVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLG 170 (844)
T ss_pred ccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhc
Confidence 4788899999999999999989999999997655432110 0 00 157
Q ss_pred CcceeecchhhHHhccCcHHHHHHHHHhC--CCC---ceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEE
Q 015454 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYL--PPD---LQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQF 249 (406)
Q Consensus 175 ~~~~vV~DE~h~~~~~~~~~~~~~~~~~~--~~~---~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (406)
+..++|+|||| ...+|...+..+.+.. ++. .|+++||||++.+.......+..++..+...........+.++
T Consensus 171 ~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~ 248 (844)
T TIGR02621 171 QDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL 248 (844)
T ss_pred cceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEE
Confidence 78999999999 5678999999998864 332 5899999999987777666666566555544444444444544
Q ss_pred EEEecccccHHHH----HHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHH-----HHHHHHhc
Q 015454 250 FVAVEREEWKFDT----LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERD-----AIMGEFRS 320 (406)
Q Consensus 250 ~~~~~~~~~~~~~----l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~ 320 (406)
+ ..+.. .+... +..++. ...+++|||||+++.++.+++.|++.++ ..+||++++.+|. .++++|++
T Consensus 249 v-~v~~e-~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~ 323 (844)
T TIGR02621 249 V-PPSDE-KFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLP 323 (844)
T ss_pred E-ecChH-HHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhc
Confidence 2 22222 23322 222232 3346899999999999999999998876 8999999999999 78999987
Q ss_pred ----CC-------CcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCce
Q 015454 321 ----GT-------TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG 370 (406)
Q Consensus 321 ----~~-------~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~ 370 (406)
|. ..|||+|+++++|+|++. ++||....| ...|+||+||+||.|+.+
T Consensus 324 ~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~ 381 (844)
T TIGR02621 324 QMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQ 381 (844)
T ss_pred cccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCC
Confidence 43 689999999999999986 788876544 689999999999998863
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2e-40 Score=320.42 Aligned_cols=315 Identities=21% Similarity=0.270 Sum_probs=230.7
Q ss_pred HHHHHHHCCCCCChHHHHHhHHhhhcC------CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHH
Q 015454 44 LLRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (406)
Q Consensus 44 i~~~l~~~~~~~l~~~Q~~~~~~i~~~------~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~ 117 (406)
+.+.+...+| +|++.|.++++.+..+ .+.+++||||||||.+++++++..+.. +.+++|++||++|+.|+
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQH 300 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHH
Confidence 3444556678 7999999999999875 358999999999999999999887753 55799999999999999
Q ss_pred HHHHHHhccCcceeEEEEECCcchHHhH---HHHh-cCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcH
Q 015454 118 EKVILAIGDFINIQAHACVGGKSVGEDI---RKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK 193 (406)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~ 193 (406)
++.+.++....++.+..++|+....++. ..+. ..++|+|+||..+.+ ...+.+++++|+||+|.+....
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~q-- 373 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQ-- 373 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHH--
Confidence 9999999888889999999987765432 2222 347999999987653 3456789999999999864322
Q ss_pred HHHHHHHHhCC--CCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHh-h-
Q 015454 194 DQIYDVYRYLP--PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-T- 269 (406)
Q Consensus 194 ~~~~~~~~~~~--~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~- 269 (406)
...+..... ..+++++||||+.+...........+...+. ........+...+... ... ..+...+. .
T Consensus 374 --r~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~--~~p~~r~~i~~~~~~~---~~~-~~~~~~i~~~l 445 (630)
T TIGR00643 374 --RKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIID--ELPPGRKPITTVLIKH---DEK-DIVYEFIEEEI 445 (630)
T ss_pred --HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeec--cCCCCCCceEEEEeCc---chH-HHHHHHHHHHH
Confidence 112222222 2578999999987754443221111111111 1111111222222221 112 22222222 2
Q ss_pred cCCcceEEEecch--------hhHHHHHHHHhc--CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCC
Q 015454 270 LTITQAVIFCNTK--------RKVDWLTEKMRG--YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ 339 (406)
Q Consensus 270 ~~~~k~lif~~~~--------~~~~~l~~~l~~--~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 339 (406)
....+++|||+.. ..++.+++.|.+ .++.+..+||+++..+|..++++|++|+.+|||||+++++|+|+|
T Consensus 446 ~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP 525 (630)
T TIGR00643 446 AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVP 525 (630)
T ss_pred HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccC
Confidence 1336899999876 345566677765 367899999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCC-ChhhhHhhhhhccCCCCceeEEEEec
Q 015454 340 QVSLVINYDLPN-NRELYIHRIGRSGRFGRKGVAINFVK 377 (406)
Q Consensus 340 ~~~~vi~~~~~~-s~~~~~Q~~GR~~R~~~~~~~~~~~~ 377 (406)
++++||+++.+. +...+.|+.||+||.|+.|.|++++.
T Consensus 526 ~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 526 NATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999999999886 67889999999999999999999993
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.1e-40 Score=333.41 Aligned_cols=321 Identities=19% Similarity=0.291 Sum_probs=231.3
Q ss_pred EECCCCCChhhHhHHHHHhhhccC----------CCceeEEEEcCcHHHHHHHHHHHHHhc------------cCcceeE
Q 015454 75 AQAQSGTGKTSMIALTVCQTVDTS----------SREVQALILSPTRELATQTEKVILAIG------------DFINIQA 132 (406)
Q Consensus 75 l~~~tGsGKT~~~~~~i~~~~~~~----------~~~~~~lil~P~~~l~~q~~~~~~~~~------------~~~~~~~ 132 (406)
|++|||||||++|++|++..+... .++.++|||+|+++|+.|+.+.++... ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999998877532 235789999999999999999886421 1346888
Q ss_pred EEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHcc-CCCcCCcceeecchhhHHhccCcH----HHHHHHHHhCCCCc
Q 015454 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFK----DQIYDVYRYLPPDL 207 (406)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~-~~~~~~~~~vV~DE~h~~~~~~~~----~~~~~~~~~~~~~~ 207 (406)
...+|+.+..++.+...++++|+|+||++|..++.++ ...++++++||+||+|.+.+..++ ..+..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999988887777778999999999999877653 345788999999999999865433 34555555566778
Q ss_pred eEEEEEecCChHHHHHHHhcCC--CCeEEEecCCccccCCceEEEEEecccc-------------------cHH-HHHHH
Q 015454 208 QVVLISATLPHEILEMTTKFMT--DPVKILVKRDELTLEGIKQFFVAVEREE-------------------WKF-DTLCD 265 (406)
Q Consensus 208 ~~i~lSAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~-~~l~~ 265 (406)
|+|++|||+++. .+. ..++. .+..+.. ........+. .+....... ... .....
T Consensus 161 QrIgLSATI~n~-eev-A~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRSA-SDV-AAFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCCH-HHH-HHHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 999999999873 333 34443 2444432 2222111222 112111100 000 01112
Q ss_pred HHhhc-CCcceEEEecchhhHHHHHHHHhcCC---------------------------------ceEEEeecCCCHHHH
Q 015454 266 LYDTL-TITQAVIFCNTKRKVDWLTEKMRGYN---------------------------------FTVSSMHGDMPQKER 311 (406)
Q Consensus 266 ~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~---------------------------------~~~~~~~~~~~~~~r 311 (406)
++... ...++||||||++.++.++..|++.. ..+..+||++++++|
T Consensus 237 il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 237 ILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 22222 23689999999999999999887531 125689999999999
Q ss_pred HHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCC-CCceeEEEEeccCc--HHHHHHHH
Q 015454 312 DAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRF-GRKGVAINFVKNDD--IKILRDIE 388 (406)
Q Consensus 312 ~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-~~~~~~~~~~~~~~--~~~~~~~~ 388 (406)
..+++.|++|++++||||++++.|||++++++||+++.|.++.+|+||+||+||. |..+.++++..+.+ .+...-++
T Consensus 317 ~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~~~ve 396 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVE 396 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997 34455664444321 11222356
Q ss_pred HHHccccccCC
Q 015454 389 QYYSTQIDEMP 399 (406)
Q Consensus 389 ~~~~~~~~~~~ 399 (406)
.+++-.++++.
T Consensus 397 ~~l~g~iE~~~ 407 (1490)
T PRK09751 397 CMFAGRLENLT 407 (1490)
T ss_pred HHhcCCCCccC
Confidence 66766666544
No 54
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.6e-39 Score=306.76 Aligned_cols=301 Identities=16% Similarity=0.148 Sum_probs=214.8
Q ss_pred CCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEE
Q 015454 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (406)
Q Consensus 54 ~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (406)
..|+++|.++++.++.+.+.++++|||+|||.++...+...+.. ...++||++|+++|+.||.+.+.+++......+.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 47999999999999999999999999999998765433222222 2347999999999999999999988754444444
Q ss_pred EEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
.+.+|.... .+.+|+|+|++++.+... ..+.++++||+||||++.... +..++..+++..+++++|
T Consensus 191 ~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~~~~lGLT 256 (501)
T PHA02558 191 KIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGKS----LTSIITKLDNCKFKFGLT 256 (501)
T ss_pred EEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccchh----HHHHHHhhhccceEEEEe
Confidence 455554321 347999999999876432 235679999999999987644 445555565667899999
Q ss_pred ecCChHHHHH--HHhcCCCCeEEEecCCccccC----CceEEEEE----------------------ecccccHHHHHHH
Q 015454 214 ATLPHEILEM--TTKFMTDPVKILVKRDELTLE----GIKQFFVA----------------------VEREEWKFDTLCD 265 (406)
Q Consensus 214 AT~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----------------------~~~~~~~~~~l~~ 265 (406)
|||....... ....+++. .......+.... ........ ......+...+..
T Consensus 257 ATp~~~~~~~~~~~~~fG~i-~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~ 335 (501)
T PHA02558 257 GSLRDGKANILQYVGLFGDI-FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIAN 335 (501)
T ss_pred ccCCCccccHHHHHHhhCCc-eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHH
Confidence 9996532211 11122211 111110000000 00000000 0011112223333
Q ss_pred HHhhc--CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEc-CcccCCCCCCCCC
Q 015454 266 LYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT-DVWARGLDVQQVS 342 (406)
Q Consensus 266 ~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t-~~~~~G~d~~~~~ 342 (406)
+.... .+.+++|||+++++++.+++.|.+.+.++..+||+++.++|..+++.|++|+..+||+| +.+++|+|+|+++
T Consensus 336 ~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld 415 (501)
T PHA02558 336 LALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLH 415 (501)
T ss_pred HHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccccc
Confidence 33222 33689999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred EEEEecCCCChhhhHhhhhhccCCCCcee
Q 015454 343 LVINYDLPNNRELYIHRIGRSGRFGRKGV 371 (406)
Q Consensus 343 ~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~ 371 (406)
+||++.++.+...|+||+||++|.+..+.
T Consensus 416 ~vIl~~p~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 416 HVIFAHPSKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred EEEEecCCcchhhhhhhhhccccCCCCCc
Confidence 99999999999999999999999876543
No 55
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=9.1e-40 Score=289.93 Aligned_cols=344 Identities=20% Similarity=0.259 Sum_probs=265.5
Q ss_pred cCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHh-hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeE
Q 015454 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA 104 (406)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~-i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~ 104 (406)
+.........+++++++.+..-++..|+..|.|.|.-++.. +++|.|.++..+|+||||++.-++-+..+..+ +.+.
T Consensus 187 ~~~~~~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~--g~Km 264 (830)
T COG1202 187 ETDEVERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG--GKKM 264 (830)
T ss_pred cccccccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC--CCeE
Confidence 33344446678899999999999999999999999999986 78999999999999999999888877776654 5579
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhH----HHHhcCCCEEEechHHHHHHHHccCCCcCCcceee
Q 015454 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI----RKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (406)
Q Consensus 105 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV 180 (406)
|+++|..+|++|-++.++.-....++.+..-.|..-..... .......||||+||+-+-.++... -.+.+++.||
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVV 343 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVV 343 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEE
Confidence 99999999999999999877677777776655543222111 112344899999999998888776 6688899999
Q ss_pred cchhhHHhccCcHHHH---HHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccc
Q 015454 181 LDESDEMLSRGFKDQI---YDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE 257 (406)
Q Consensus 181 ~DE~h~~~~~~~~~~~---~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (406)
+||+|.+.+...+..+ ..-++.+.++.|++++|||..+. .+....+..+.+. . +.. +..+...........
T Consensus 344 IDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~--y--~~R-PVplErHlvf~~~e~ 417 (830)
T COG1202 344 IDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVL--Y--DER-PVPLERHLVFARNES 417 (830)
T ss_pred eeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEe--e--cCC-CCChhHeeeeecCch
Confidence 9999998775433333 33344555689999999999765 4444444433332 2 222 223334444555555
Q ss_pred cHHHHHHHHHhhc--------CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEc
Q 015454 258 WKFDTLCDLYDTL--------TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT 329 (406)
Q Consensus 258 ~~~~~l~~~~~~~--------~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t 329 (406)
.|.+.+..+.+.. -.+++|||++|++.++.++..|...|+++..||++++..+|..+...|.++++.++|+|
T Consensus 418 eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTT 497 (830)
T COG1202 418 EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTT 497 (830)
T ss_pred HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeeh
Confidence 5888888776532 12689999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCCCEEEEec-----CCCChhhhHhhhhhccCCC--CceeEEEEeccC
Q 015454 330 DVWARGLDVQQVSLVINYD-----LPNNRELYIHRIGRSGRFG--RKGVAINFVKND 379 (406)
Q Consensus 330 ~~~~~G~d~~~~~~vi~~~-----~~~s~~~~~Q~~GR~~R~~--~~~~~~~~~~~~ 379 (406)
.+++.|+|+|.-. ||+-+ -..|+..|.||.||+||.+ ..|++++++.+.
T Consensus 498 AAL~AGVDFPASQ-VIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 498 AALAAGVDFPASQ-VIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhhcCCCCchHH-HHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999998544 44322 2358999999999999975 458888887753
No 56
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.4e-38 Score=308.64 Aligned_cols=350 Identities=22% Similarity=0.321 Sum_probs=268.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHH
Q 015454 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (406)
Q Consensus 40 l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~ 119 (406)
....+..++.+.|+..|+.||.+|+..+.+|+|++|+.|||||||.+|++|+++.+...... ++|++.|+++|++++.+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~ 133 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAE 133 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHH
Confidence 45566888899999999999999999999999999999999999999999999998776543 79999999999999999
Q ss_pred HHHHhccCcc--eeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHcc----CCCcCCcceeecchhhHHhccC--
Q 015454 120 VILAIGDFIN--IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLVLDESDEMLSRG-- 191 (406)
Q Consensus 120 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~----~~~~~~~~~vV~DE~h~~~~~~-- 191 (406)
++.++....+ +.+....|+....+......++++|++|||++|...+... .+.+.++++||+||+|.+-...
T Consensus 134 rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS 213 (851)
T COG1205 134 RLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGS 213 (851)
T ss_pred HHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchh
Confidence 9999887665 7788888888888877778899999999999998855432 2445779999999999875432
Q ss_pred -cHHHHHHHH---HhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecc--------cccH
Q 015454 192 -FKDQIYDVY---RYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER--------EEWK 259 (406)
Q Consensus 192 -~~~~~~~~~---~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 259 (406)
....++++. +..+..+|+++.|||+... .+....+........+. +...+.....+....+. ....
T Consensus 214 ~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~-~~g~~~~~~~~~~~~p~~~~~~~~~r~s~ 291 (851)
T COG1205 214 EVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVD-EDGSPRGLRYFVRREPPIRELAESIRRSA 291 (851)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeecc-CCCCCCCceEEEEeCCcchhhhhhcccch
Confidence 222333333 3334588999999998765 45555555554444322 22333333333333330 1123
Q ss_pred HHHHHHHHhhc--CCcceEEEecchhhHHHHH----HHHhcCC----ceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEc
Q 015454 260 FDTLCDLYDTL--TITQAVIFCNTKRKVDWLT----EKMRGYN----FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT 329 (406)
Q Consensus 260 ~~~l~~~~~~~--~~~k~lif~~~~~~~~~l~----~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t 329 (406)
...+..+.... .+-++|+|+.+++.++.+. ..+...+ ..+..+++++...+|..++..|++|+..++++|
T Consensus 292 ~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st 371 (851)
T COG1205 292 LAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIAT 371 (851)
T ss_pred HHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecc
Confidence 33444444332 3358999999999999886 4444444 568899999999999999999999999999999
Q ss_pred CcccCCCCCCCCCEEEEecCCC-ChhhhHhhhhhccCCCCceeEEEEeccC--cHHHHHHHHHHHc
Q 015454 330 DVWARGLDVQQVSLVINYDLPN-NRELYIHRIGRSGRFGRKGVAINFVKND--DIKILRDIEQYYS 392 (406)
Q Consensus 330 ~~~~~G~d~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 392 (406)
++++.|+|+.+++.||..+.|. +..++.|+.||+||.++.+..+++...+ |..+...-+..+.
T Consensus 372 ~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 372 NALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred hhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 9999999999999999999999 9999999999999999777777766643 4444444455444
No 57
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-39 Score=261.01 Aligned_cols=334 Identities=37% Similarity=0.692 Sum_probs=294.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcH
Q 015454 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (406)
Q Consensus 32 ~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~ 111 (406)
.+-|.++-|.+.+.++.-+.||..|+..|.+++|...-|.+++.+|..|.|||.+|.++.++.+........++++|.|+
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtr 120 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTR 120 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccH
Confidence 35688888999999999999999999999999999999999999999999999999999999998877788899999999
Q ss_pred HHHHHHHHHHHHhccC-cceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhcc
Q 015454 112 ELATQTEKVILAIGDF-INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (406)
Q Consensus 112 ~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~ 190 (406)
+|+-|...+..++... .+.++..++||.........+.+.++|+|+||++++.+.++..+.+.+++.+|+|||+.++..
T Consensus 121 elafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~ 200 (387)
T KOG0329|consen 121 ELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQ 200 (387)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHH
Confidence 9999999998888764 468899999999988887878888999999999999999999999999999999999987654
Q ss_pred -CcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCC-ccccCCceEEEEEecccccHHHHHHHHHh
Q 015454 191 -GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (406)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 268 (406)
..+..+..+.+.-|+..|+..+|||++.+++..+..++.+|..+.++.+ .....+..++|......+ +...+..++.
T Consensus 201 lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e-KNrkl~dLLd 279 (387)
T KOG0329|consen 201 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE-KNRKLNDLLD 279 (387)
T ss_pred HHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhh-hhhhhhhhhh
Confidence 5677888999999999999999999999999999999999977665543 456678888888777765 6677777787
Q ss_pred hcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEec
Q 015454 269 TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYD 348 (406)
Q Consensus 269 ~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 348 (406)
.....+++||+.+..... | +.+ +|+|+.+++|+|+..++.++.++
T Consensus 280 ~LeFNQVvIFvKsv~Rl~-------------------------------f---~kr-~vat~lfgrgmdiervNi~~NYd 324 (387)
T KOG0329|consen 280 VLEFNQVVIFVKSVQRLS-------------------------------F---QKR-LVATDLFGRGMDIERVNIVFNYD 324 (387)
T ss_pred hhhhcceeEeeehhhhhh-------------------------------h---hhh-hHHhhhhccccCcccceeeeccC
Confidence 777789999999876510 2 122 89999999999999999999999
Q ss_pred CCCChhhhHhhhhhccCCCCceeEEEEecc-CcHHHHHHHHHHHccccccCCcc
Q 015454 349 LPNNRELYIHRIGRSGRFGRKGVAINFVKN-DDIKILRDIEQYYSTQIDEMPMN 401 (406)
Q Consensus 349 ~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 401 (406)
.|.+..+|++|.||+||.|..|-++.|+.. +|.+.+..+..-+...+.++|..
T Consensus 325 mp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 325 MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred CCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 999999999999999999999999999875 57788889999899999998876
No 58
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.2e-37 Score=313.73 Aligned_cols=283 Identities=19% Similarity=0.286 Sum_probs=217.7
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|+ .|+++|..+++.++.|++++++||||+|||..+ +++...+. .++.+++|++||++|+.|+.+.++.++...++
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~-l~~~~~l~--~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFG-LVMSLYLA--KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHH-HHHHHHHH--hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 366 899999999999999999999999999999643 34433332 23678999999999999999999999888777
Q ss_pred eEEEEECCcch-----HHhHHHHh-cCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhc-----------cCcH
Q 015454 131 QAHACVGGKSV-----GEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-----------RGFK 193 (406)
Q Consensus 131 ~~~~~~~~~~~-----~~~~~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~-----------~~~~ 193 (406)
.+..+.++.+. .+....+. ..++|+|+||++|.+.+. .+....++++|+||||.+.. .+|.
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~ 230 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFS 230 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCC
Confidence 77777666442 22233333 458999999999998776 34456699999999999985 3453
Q ss_pred -HHHHHHHHhCCC------------------------CceEEEEEecCChH-HHHHHHhcCCCCeEEEecCCccccCCce
Q 015454 194 -DQIYDVYRYLPP------------------------DLQVVLISATLPHE-ILEMTTKFMTDPVKILVKRDELTLEGIK 247 (406)
Q Consensus 194 -~~~~~~~~~~~~------------------------~~~~i~lSAT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (406)
..+..+++.++. ..|++++|||.++. .... .+.++..+.+........++.
T Consensus 231 ~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~---l~~~ll~~~v~~~~~~~rnI~ 307 (1176)
T PRK09401 231 EEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVK---LFRELLGFEVGSPVFYLRNIV 307 (1176)
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHH---HhhccceEEecCcccccCCce
Confidence 456556555543 67899999999874 3321 222333444444444556677
Q ss_pred EEEEEecccccHHHHHHHHHhhcCCcceEEEecchhh---HHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCc
Q 015454 248 QFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRK---VDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTR 324 (406)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 324 (406)
+.+.... .+...+..+++... .++||||++.+. ++.+++.|...|+++..+||++ .+.+++|++|+++
T Consensus 308 ~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~ 378 (1176)
T PRK09401 308 DSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD 378 (1176)
T ss_pred EEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC
Confidence 7766554 36667777777654 589999999777 9999999999999999999998 2345999999999
Q ss_pred EEEE----cCcccCCCCCCC-CCEEEEecCCC
Q 015454 325 VLIT----TDVWARGLDVQQ-VSLVINYDLPN 351 (406)
Q Consensus 325 vli~----t~~~~~G~d~~~-~~~vi~~~~~~ 351 (406)
|||+ |+.+++|+|+|+ +++||+++.|.
T Consensus 379 VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 379 VLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred EEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9999 588999999999 89999998886
No 59
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.4e-37 Score=296.30 Aligned_cols=316 Identities=20% Similarity=0.242 Sum_probs=226.1
Q ss_pred hHHHHHhHHhhhcCCcEEEECCCCCChhhHh---------HHHHHhhhc---cCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015454 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI---------ALTVCQTVD---TSSREVQALILSPTRELATQTEKVILAI 124 (406)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~---------~~~i~~~~~---~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (406)
...|.++++.+.++++++++|+||||||.++ +++.+..+. ....+.++++++|+++|+.|+...+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999863 223333322 1334568999999999999999988764
Q ss_pred ccC---cceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHH
Q 015454 125 GDF---INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 201 (406)
Q Consensus 125 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~ 201 (406)
... .+..+...+|+... ..........+++++|+.... ..+.++++||+||||+....+ +.+..+.+
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~--DllL~llk 315 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG--DIIIAVAR 315 (675)
T ss_pred hCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccch--hHHHHHHH
Confidence 432 34566777888763 221222235789999975211 246779999999999976554 34444444
Q ss_pred hC-CCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecc---------cccHHHHHHHHHhh--
Q 015454 202 YL-PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER---------EEWKFDTLCDLYDT-- 269 (406)
Q Consensus 202 ~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~-- 269 (406)
.. +...|+++||||++.+...+ ..++.++..+.... .....+.+++..... ...+...+..+...
T Consensus 316 ~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~ 392 (675)
T PHA02653 316 KHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTP 392 (675)
T ss_pred HhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhc
Confidence 33 23358999999998776554 56777776665532 222344555443221 11122222222222
Q ss_pred cCCcceEEEecchhhHHHHHHHHhcC--CceEEEeecCCCHHHHHHHHHHH-hcCCCcEEEEcCcccCCCCCCCCCEEEE
Q 015454 270 LTITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEF-RSGTTRVLITTDVWARGLDVQQVSLVIN 346 (406)
Q Consensus 270 ~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~~~~~vli~t~~~~~G~d~~~~~~vi~ 346 (406)
...+++|||++++++++.+.+.|.+. ++.+..+||++++. ++.+++| ++|+.+|||||+++++|+|+|++++||.
T Consensus 393 ~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID 470 (675)
T PHA02653 393 PKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYD 470 (675)
T ss_pred ccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEE
Confidence 12368999999999999999999876 68999999999875 5666777 6899999999999999999999999999
Q ss_pred ec---CCC---------ChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHH
Q 015454 347 YD---LPN---------NRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 388 (406)
Q Consensus 347 ~~---~~~---------s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~ 388 (406)
++ .|. |..+|.||.||+||. ++|.|+.++++.+...+.++.
T Consensus 471 ~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 471 TGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred CCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 98 443 778999999999999 799999999987654444443
No 60
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.9e-38 Score=304.00 Aligned_cols=334 Identities=20% Similarity=0.283 Sum_probs=246.2
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHhHHhhhc-CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHH
Q 015454 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (406)
Q Consensus 38 ~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~-~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q 116 (406)
..+++.+.+-+...++.++++.|+.++..... ++|+++++|||||||++++++++..+.++ +.+++|++|+++|+.+
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~E 91 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEE 91 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHH
Confidence 34677888888888888999999999887655 59999999999999999999999998765 5679999999999999
Q ss_pred HHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHH
Q 015454 117 TEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 196 (406)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~ 196 (406)
.++++.++ ...++++...+|+....... -.+++|+|+||+++-....+.......+++||+||+|.+.+...+..+
T Consensus 92 k~~~~~~~-~~~GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~l 167 (766)
T COG1204 92 KYEEFSRL-EELGIRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVL 167 (766)
T ss_pred HHHHhhhH-HhcCCEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCcee
Confidence 99999943 47789999999988765432 245899999999999998887777888999999999999887545444
Q ss_pred HHHHH---hCCCCceEEEEEecCChHHHHHHHhcCCCC-eEEEecCCc-cccCCceEEEEEec-cc-----ccHHHHHHH
Q 015454 197 YDVYR---YLPPDLQVVLISATLPHEILEMTTKFMTDP-VKILVKRDE-LTLEGIKQFFVAVE-RE-----EWKFDTLCD 265 (406)
Q Consensus 197 ~~~~~---~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~-~~-----~~~~~~l~~ 265 (406)
..+.. ......|++++|||+++ ...+..|+.-. ......+.. .........+.... .. ......+..
T Consensus 168 E~iv~r~~~~~~~~rivgLSATlpN--~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~ 245 (766)
T COG1204 168 ESIVARMRRLNELIRIVGLSATLPN--AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALEL 245 (766)
T ss_pred hhHHHHHHhhCcceEEEEEeeecCC--HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHH
Confidence 44433 33344799999999987 34444444332 211111111 11111111111111 11 112223333
Q ss_pred HHhhcC-CcceEEEecchhhHHHHHHHHhcC-------------------------------------CceEEEeecCCC
Q 015454 266 LYDTLT-ITQAVIFCNTKRKVDWLTEKMRGY-------------------------------------NFTVSSMHGDMP 307 (406)
Q Consensus 266 ~~~~~~-~~k~lif~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~~~ 307 (406)
++.... +++++|||+|++.+...++.+... -..+..+|++++
T Consensus 246 v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~ 325 (766)
T COG1204 246 VLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLP 325 (766)
T ss_pred HHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCC
Confidence 333332 369999999999988888887620 023778999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEE----ec-----CCCChhhhHhhhhhccCCCCc--eeEEEEe
Q 015454 308 QKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----YD-----LPNNRELYIHRIGRSGRFGRK--GVAINFV 376 (406)
Q Consensus 308 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~-----~~~s~~~~~Q~~GR~~R~~~~--~~~~~~~ 376 (406)
.++|..+.+.|+.|.++||+||+++..|+|+|.-+++|- ++ .+.+..+++||.||+||.|-+ |.++++.
T Consensus 326 ~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 326 REDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred HHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 999999999999999999999999999999997666652 44 345788999999999999755 7777777
Q ss_pred ccC
Q 015454 377 KND 379 (406)
Q Consensus 377 ~~~ 379 (406)
...
T Consensus 406 ~~~ 408 (766)
T COG1204 406 TSH 408 (766)
T ss_pred cCc
Confidence 443
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=4e-37 Score=281.46 Aligned_cols=299 Identities=18% Similarity=0.169 Sum_probs=204.1
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcch----------
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSV---------- 141 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------- 141 (406)
++++.+|||||||.+++.+++..+.. ..+.+++|++|+++|+.|+++.+..+... .+...+++...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCch
Confidence 47899999999999999999987654 34568999999999999999999886322 22223332211
Q ss_pred --HHhHHHH------hcCCCEEEechHHHHHHHHccCC----C--cCCcceeecchhhHHhccCcHHHHHHHHHhCC-CC
Q 015454 142 --GEDIRKL------EHGVHVVSGTPGRVCDMIKRKTL----R--TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PD 206 (406)
Q Consensus 142 --~~~~~~~------~~~~~iii~T~~~l~~~l~~~~~----~--~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~-~~ 206 (406)
....... ....+|+++||+++...+..... . .-..+++|+||+|.+....+.. +..+++.++ .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~ 155 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDND 155 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcC
Confidence 0001111 12367999999999877665211 1 1123789999999987654333 444444333 46
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEE-EEecccccHHHHHHHHHhhc-CCcceEEEecchhh
Q 015454 207 LQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFF-VAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRK 284 (406)
Q Consensus 207 ~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~k~lif~~~~~~ 284 (406)
.|++++|||+++.+..........+............ ...+.+ ........+...+..+++.. .++++||||++++.
T Consensus 156 ~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 156 VPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERR-FERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred CCEEEEecCchHHHHHHHhcCCCcccccCCCCccccc-cccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHH
Confidence 7899999999977666665543322111111110000 011111 11222223445555555543 34799999999999
Q ss_pred HHHHHHHHhcCCc--eEEEeecCCCHHHHHH----HHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHh
Q 015454 285 VDWLTEKMRGYNF--TVSSMHGDMPQKERDA----IMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIH 358 (406)
Q Consensus 285 ~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q 358 (406)
++.+++.|++.+. .+..+||++++.+|.. +++.|++|+..+||||+++++|+|++ ++.++.+.. +...|+|
T Consensus 235 ~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~--~~~~~iq 311 (358)
T TIGR01587 235 AQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELA--PIDSLIQ 311 (358)
T ss_pred HHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCC--CHHHHHH
Confidence 9999999988765 5899999999999976 48899999999999999999999995 778877654 4789999
Q ss_pred hhhhccCCCCc----eeEEEEeccC
Q 015454 359 RIGRSGRFGRK----GVAINFVKND 379 (406)
Q Consensus 359 ~~GR~~R~~~~----~~~~~~~~~~ 379 (406)
|+||+||.|+. |.++++....
T Consensus 312 r~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 312 RLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HhccccCCCCCCCCCCeEEEEeecC
Confidence 99999998754 3677776644
No 62
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1e-36 Score=297.15 Aligned_cols=304 Identities=17% Similarity=0.288 Sum_probs=229.8
Q ss_pred HHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHH-hccCcceeEEEEECCc
Q 015454 61 QRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAHACVGGK 139 (406)
Q Consensus 61 ~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~ 139 (406)
.+.+..+..+.+++++|+||||||.++.++++.... .+.+++++.|+++++.|.++.+.+ ++...+..++......
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~ 84 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE 84 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc
Confidence 456667777899999999999999999999987753 245799999999999999999854 4444455555444432
Q ss_pred chHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhH-HhccCcHH-HHHHHHHhCCCCceEEEEEecCC
Q 015454 140 SVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE-MLSRGFKD-QIYDVYRYLPPDLQVVLISATLP 217 (406)
Q Consensus 140 ~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~-~~~~~~~~-~~~~~~~~~~~~~~~i~lSAT~~ 217 (406)
+ ......+|+|+|++.|.+.+.+. ..+.++++||+||+|+ ..+.++.. .+..+...++++.|+++||||++
T Consensus 85 ~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~ 157 (819)
T TIGR01970 85 N------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLD 157 (819)
T ss_pred c------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCC
Confidence 2 12344789999999999988764 4688899999999996 45544432 33455566778899999999998
Q ss_pred hHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccH----HHHHHHHHhhcCCcceEEEecchhhHHHHHHHHh
Q 015454 218 HEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK----FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR 293 (406)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~ 293 (406)
... +..++.+...+....... .+..+|......... ...+..+++. ..+++|||+++..+++.+++.|.
T Consensus 158 ~~~---l~~~l~~~~vI~~~gr~~---pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~ 230 (819)
T TIGR01970 158 GER---LSSLLPDAPVVESEGRSF---PVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLA 230 (819)
T ss_pred HHH---HHHHcCCCcEEEecCcce---eeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHH
Confidence 753 345555443443333222 234444443322211 2234444443 34789999999999999999998
Q ss_pred c---CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCC------------------C
Q 015454 294 G---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPN------------------N 352 (406)
Q Consensus 294 ~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~------------------s 352 (406)
+ .++.+..+||+++.++|..+++.|.+|..+|||||+++++|+|+|++++||.++.+. |
T Consensus 231 ~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iS 310 (819)
T TIGR01970 231 ERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRIS 310 (819)
T ss_pred hhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEEC
Confidence 7 478899999999999999999999999999999999999999999999999998864 2
Q ss_pred hhhhHhhhhhccCCCCceeEEEEeccCcHH
Q 015454 353 RELYIHRIGRSGRFGRKGVAINFVKNDDIK 382 (406)
Q Consensus 353 ~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 382 (406)
..++.||.||+||. ++|.|+.++++.+..
T Consensus 311 kasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 311 QASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred HHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 34589999999999 799999999876543
No 63
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4e-36 Score=300.28 Aligned_cols=322 Identities=20% Similarity=0.280 Sum_probs=238.0
Q ss_pred CCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEE
Q 015454 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (406)
Q Consensus 54 ~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (406)
.++++||.+++..++.+ ++++++|||+|||+++++++...+. ..+.++||++|+++|+.|+.+.++++.......+.
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIV 90 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEE
Confidence 47899999999988876 8999999999999999888877763 34568999999999999999999987654445666
Q ss_pred EEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
.+.|+.....+. ....+.+|+|+||+.+...+....+...++++||+||||++.+......+...+....+.++++++|
T Consensus 91 ~~~g~~~~~~r~-~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lT 169 (773)
T PRK13766 91 VFTGEVSPEKRA-ELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLT 169 (773)
T ss_pred EEeCCCCHHHHH-HHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEE
Confidence 777776655433 3345679999999999888877778888999999999999876544444444444445677899999
Q ss_pred ecCChHH---HHHHHhcCCCCeEEEecCC---------------------------------------------ccccCC
Q 015454 214 ATLPHEI---LEMTTKFMTDPVKILVKRD---------------------------------------------ELTLEG 245 (406)
Q Consensus 214 AT~~~~~---~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~ 245 (406)
|||.... ...+..+......+..... ......
T Consensus 170 aTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~ 249 (773)
T PRK13766 170 ASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSIS 249 (773)
T ss_pred cCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 9984321 1111111100000000000 000000
Q ss_pred --------------ceEE--------------------------------------------------------------
Q 015454 246 --------------IKQF-------------------------------------------------------------- 249 (406)
Q Consensus 246 --------------~~~~-------------------------------------------------------------- 249 (406)
+...
T Consensus 250 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~ 329 (773)
T PRK13766 250 PDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVED 329 (773)
T ss_pred CCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhC
Confidence 0000
Q ss_pred ---------EEEecccccHHHHHHHHHhh----cCCcceEEEecchhhHHHHHHHHhcCCceEEEeecC--------CCH
Q 015454 250 ---------FVAVEREEWKFDTLCDLYDT----LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGD--------MPQ 308 (406)
Q Consensus 250 ---------~~~~~~~~~~~~~l~~~~~~----~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~--------~~~ 308 (406)
...+.....|+..|..+++. ....++||||++++.++.+.+.|...++.+..+||. +++
T Consensus 330 ~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~ 409 (773)
T PRK13766 330 PRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQ 409 (773)
T ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCH
Confidence 00001112345555555544 455799999999999999999999999998888886 888
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCc
Q 015454 309 KERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDD 380 (406)
Q Consensus 309 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 380 (406)
.+|..++++|++|+.++||+|+++++|+|+|++++||+++++++...|+||+||+||.|. |.+++++....
T Consensus 410 ~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 410 KEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999864 77777776543
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.5e-36 Score=296.82 Aligned_cols=303 Identities=17% Similarity=0.294 Sum_probs=229.0
Q ss_pred HHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHH-hccCcceeEEEEECCc
Q 015454 61 QRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAHACVGGK 139 (406)
Q Consensus 61 ~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~ 139 (406)
.+.+..+.++++++++|+||||||.++.++++..... ..+++++.|+++++.|.++.+.. ++...+..++...++.
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~ 87 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAE 87 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCc
Confidence 4566677778999999999999999999988875422 24799999999999999999854 4455566666655544
Q ss_pred chHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHH-hccCc-HHHHHHHHHhCCCCceEEEEEecCC
Q 015454 140 SVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM-LSRGF-KDQIYDVYRYLPPDLQVVLISATLP 217 (406)
Q Consensus 140 ~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~-~~~~~-~~~~~~~~~~~~~~~~~i~lSAT~~ 217 (406)
... .....|+|+|++.|.+.+... ..+.++++||+||+|+. .+.+. -..+..+.+.++++.|+++||||++
T Consensus 88 ~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~ 160 (812)
T PRK11664 88 SKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD 160 (812)
T ss_pred ccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCC
Confidence 321 234689999999999988764 46889999999999973 22221 1233455566778899999999998
Q ss_pred hHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHH----HHHHHHHhhcCCcceEEEecchhhHHHHHHHHh
Q 015454 218 HEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF----DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR 293 (406)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~ 293 (406)
... +..++.++..+...... ..+.++|.......... ..+..+++. ..+.+|||+++..+++.+++.|.
T Consensus 161 ~~~---l~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~ 233 (812)
T PRK11664 161 NDR---LQQLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLA 233 (812)
T ss_pred HHH---HHHhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHH
Confidence 652 34555544444433322 12444444443322221 234444443 34789999999999999999998
Q ss_pred c---CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCC------------------C
Q 015454 294 G---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPN------------------N 352 (406)
Q Consensus 294 ~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~------------------s 352 (406)
+ .++.+..+||+++..+|..++..|.+|+.+|||||+++++|+|+|++++||..+.+. |
T Consensus 234 ~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iS 313 (812)
T PRK11664 234 SRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRIS 313 (812)
T ss_pred HhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeec
Confidence 6 577899999999999999999999999999999999999999999999999988764 3
Q ss_pred hhhhHhhhhhccCCCCceeEEEEeccCcH
Q 015454 353 RELYIHRIGRSGRFGRKGVAINFVKNDDI 381 (406)
Q Consensus 353 ~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 381 (406)
..++.||.||+||. ++|.|+.++++.+.
T Consensus 314 kasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 314 QASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred hhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 35799999999999 69999999997654
No 65
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=8.1e-37 Score=284.17 Aligned_cols=323 Identities=20% Similarity=0.304 Sum_probs=226.1
Q ss_pred CCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEE
Q 015454 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (406)
Q Consensus 54 ~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (406)
..||+||.+.+...+ |+|+++++|||+|||++++..+.+++..- +..++++++|++-|+.|+...+..++.. ..+.
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~-p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T 136 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR-PKGKVVFLAPTRPLVNQQIACFSIYLIP--YSVT 136 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC-CcceEEEeeCCchHHHHHHHHHhhccCc--ccce
Confidence 379999999999988 99999999999999999999888877544 4478999999999999999888887765 3344
Q ss_pred EEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCC-cCCcceeecchhhHHhccCcH-HHHHHHHHhCCCCceEEE
Q 015454 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLR-TRAIKLLVLDESDEMLSRGFK-DQIYDVYRYLPPDLQVVL 211 (406)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~-~~~~~~vV~DE~h~~~~~~~~-~~~~~~~~~~~~~~~~i~ 211 (406)
...+|.........+....+++|+||+.+.+-+.+.... ++.|.++||||||+....... ..+..++.......|+++
T Consensus 137 ~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILg 216 (746)
T KOG0354|consen 137 GQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILG 216 (746)
T ss_pred eeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEE
Confidence 444443322222344456899999999999888776544 488999999999998766544 444455555555569999
Q ss_pred EEecCChHHHHHHHh---cCCC----------------------CeEEE-----------------------------ec
Q 015454 212 ISATLPHEILEMTTK---FMTD----------------------PVKIL-----------------------------VK 237 (406)
Q Consensus 212 lSAT~~~~~~~~~~~---~~~~----------------------~~~~~-----------------------------~~ 237 (406)
+||||+........- +... +..+. ..
T Consensus 217 LTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~ 296 (746)
T KOG0354|consen 217 LTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISD 296 (746)
T ss_pred EecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcccccc
Confidence 999986543221111 1000 00000 00
Q ss_pred CC-----------ccccC--------------------------Cce---------EEE---------------------
Q 015454 238 RD-----------ELTLE--------------------------GIK---------QFF--------------------- 250 (406)
Q Consensus 238 ~~-----------~~~~~--------------------------~~~---------~~~--------------------- 250 (406)
.. ....+ ++. .++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~ 376 (746)
T KOG0354|consen 297 KSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNF 376 (746)
T ss_pred ccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHH
Confidence 00 00000 000 000
Q ss_pred -----------EEecccccHHHHHHHHH----hhcCCcceEEEecchhhHHHHHHHHhc---CCceEEEe--------ec
Q 015454 251 -----------VAVEREEWKFDTLCDLY----DTLTITQAVIFCNTKRKVDWLTEKMRG---YNFTVSSM--------HG 304 (406)
Q Consensus 251 -----------~~~~~~~~~~~~l~~~~----~~~~~~k~lif~~~~~~~~~l~~~l~~---~~~~~~~~--------~~ 304 (406)
...+....+++.+...+ ...++.++|||+.+++.|..+...|.+ .+++...+ ..
T Consensus 377 ~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~ 456 (746)
T KOG0354|consen 377 TENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQST 456 (746)
T ss_pred HHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecccccccc
Confidence 00000111333333333 222346899999999999999999873 23333333 24
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHH
Q 015454 305 DMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIK 382 (406)
Q Consensus 305 ~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 382 (406)
+|++.+..++++.|++|++.|||||+++++|+|++.++.||.|+...|+..++||.|| ||. +.|+++++....+..
T Consensus 457 gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~ 532 (746)
T KOG0354|consen 457 GMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVI 532 (746)
T ss_pred ccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHH
Confidence 7899999999999999999999999999999999999999999999999999999999 898 578888888754433
No 66
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.1e-36 Score=310.94 Aligned_cols=325 Identities=17% Similarity=0.229 Sum_probs=241.8
Q ss_pred HHHHHHHH-CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHH
Q 015454 43 DLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (406)
Q Consensus 43 ~i~~~l~~-~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (406)
++.+.+++ .|+ .|++.|.++++.++.|+++++.||||+|||++++++.+... .++.+++|++||++|+.|+.+.+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~---~~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA---LKGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH---hcCCeEEEEECHHHHHHHHHHHH
Confidence 33344444 688 69999999999999999999999999999986555444332 23568999999999999999999
Q ss_pred HHhccCc--ceeEEEEECCcchHHhH---HHHhc-CCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhc------
Q 015454 122 LAIGDFI--NIQAHACVGGKSVGEDI---RKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS------ 189 (406)
Q Consensus 122 ~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~-~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~------ 189 (406)
+.++... ++.+..++|+.+..++. ..+.. .++|+|+||+.|...+... . ..+++++|+||||.++.
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccccccccc
Confidence 9987654 45666778887765543 23333 4899999999998766542 2 26789999999999976
Q ss_pred -----cCcHHHHHH----HHH----------------------hCCCCce-EEEEEecCChHHHHHHHhcCCCCeEEEec
Q 015454 190 -----RGFKDQIYD----VYR----------------------YLPPDLQ-VVLISATLPHEILEMTTKFMTDPVKILVK 237 (406)
Q Consensus 190 -----~~~~~~~~~----~~~----------------------~~~~~~~-~i~lSAT~~~~~~~~~~~~~~~~~~~~~~ 237 (406)
.+|...+.. +++ .+++..| .+.+|||.++. ......+.++..+.+.
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~~~l~f~v~ 298 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLYRELLGFEVG 298 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHhhcCeEEEec
Confidence 356555542 221 2344455 56799999863 1122334555566666
Q ss_pred CCccccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchhh---HHHHHHHHhcCCceEEEeecCCCHHHHHHH
Q 015454 238 RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRK---VDWLTEKMRGYNFTVSSMHGDMPQKERDAI 314 (406)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~ 314 (406)
.......++.+.+....... + ..+..+++.. ...+||||++++. ++.+++.|...|+++..+||+ |...
T Consensus 299 ~~~~~lr~i~~~yi~~~~~~-k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~ 370 (1638)
T PRK14701 299 SGRSALRNIVDVYLNPEKII-K-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKG 370 (1638)
T ss_pred CCCCCCCCcEEEEEECCHHH-H-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHH
Confidence 66566677777776554332 3 4666777665 3689999999875 589999999999999999995 8899
Q ss_pred HHHHhcCCCcEEEEcC----cccCCCCCCC-CCEEEEecCCC---ChhhhHhh-------------hhhccCCCCceeEE
Q 015454 315 MGEFRSGTTRVLITTD----VWARGLDVQQ-VSLVINYDLPN---NRELYIHR-------------IGRSGRFGRKGVAI 373 (406)
Q Consensus 315 ~~~f~~~~~~vli~t~----~~~~G~d~~~-~~~vi~~~~~~---s~~~~~Q~-------------~GR~~R~~~~~~~~ 373 (406)
+++|++|+++|||||. .+.+|+|+|+ +++||+++.|. +...|.|. .||++|.|.+..++
T Consensus 371 l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~ 450 (1638)
T PRK14701 371 FDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGV 450 (1638)
T ss_pred HHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhH
Confidence 9999999999999994 7889999998 99999999998 76655554 49999999887776
Q ss_pred EEeccCcHHH
Q 015454 374 NFVKNDDIKI 383 (406)
Q Consensus 374 ~~~~~~~~~~ 383 (406)
..+...+...
T Consensus 451 ~~~~~~~~~~ 460 (1638)
T PRK14701 451 LDVFPEDVEF 460 (1638)
T ss_pred HHhHHHHHHH
Confidence 4433334333
No 67
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.7e-36 Score=287.65 Aligned_cols=316 Identities=17% Similarity=0.178 Sum_probs=216.9
Q ss_pred CChHHHHHhHHhhhc-C--CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCccee
Q 015454 55 KPSAIQQRAVMPIIK-G--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~-~--~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (406)
.||+||.+++..+.. + ++.++++|||+|||++.+..+... +.++||+||+..|+.||.+++.++.......
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 589999999998774 3 468999999999999887655443 2459999999999999999999986544455
Q ss_pred EEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc--------cCCCcCCcceeecchhhHHhccCcHHHHHHHHHhC
Q 015454 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (406)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~--------~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~ 203 (406)
+..+.++.... .....+|+|+|++++.+...+ ..+....+++||+||||++... .+..+...+
T Consensus 329 I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~----~fr~il~~l 399 (732)
T TIGR00603 329 ICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA----MFRRVLTIV 399 (732)
T ss_pred EEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH----HHHHHHHhc
Confidence 55555543221 123368999999988643211 1233356899999999988543 344445444
Q ss_pred CCCceEEEEEecCChHH--HHHHHhcCCCCeEEEecCCccc----cCCceE--EEEEe--------------------cc
Q 015454 204 PPDLQVVLISATLPHEI--LEMTTKFMTDPVKILVKRDELT----LEGIKQ--FFVAV--------------------ER 255 (406)
Q Consensus 204 ~~~~~~i~lSAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~--------------------~~ 255 (406)
. ....+++||||.... ...+..+++... ......+.. ...... .+... ..
T Consensus 400 ~-a~~RLGLTATP~ReD~~~~~L~~LiGP~v-ye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~ 477 (732)
T TIGR00603 400 Q-AHCKLGLTATLVREDDKITDLNFLIGPKL-YEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVM 477 (732)
T ss_pred C-cCcEEEEeecCcccCCchhhhhhhcCCee-eecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhh
Confidence 3 345799999985321 112222222221 111110000 011111 11111 11
Q ss_pred cccHHHHHHHHHhhc--CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcC-CCcEEEEcCcc
Q 015454 256 EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSG-TTRVLITTDVW 332 (406)
Q Consensus 256 ~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~ 332 (406)
...|...+..+++.+ .+.++||||++...+..+++.|. +..+||.++..+|..++++|+.| .+++||+|.++
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVg 552 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVG 552 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEeccc
Confidence 223555555666654 55799999999999998888873 45689999999999999999875 78999999999
Q ss_pred cCCCCCCCCCEEEEecCC-CChhhhHhhhhhccCCCCceeE-------EEEeccCcH--HHHHHHHHHHc
Q 015454 333 ARGLDVQQVSLVINYDLP-NNRELYIHRIGRSGRFGRKGVA-------INFVKNDDI--KILRDIEQYYS 392 (406)
Q Consensus 333 ~~G~d~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~ 392 (406)
.+|+|+|++++||+++.| .|...|+||+||++|.++.+.+ +.+++.+.. .+-.+-++++.
T Consensus 553 deGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~ 622 (732)
T TIGR00603 553 DTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLV 622 (732)
T ss_pred ccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHH
Confidence 999999999999999987 5999999999999999766543 666666543 44445555554
No 68
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-36 Score=260.87 Aligned_cols=333 Identities=18% Similarity=0.240 Sum_probs=242.7
Q ss_pred HHHHHHH-CCCCC-ChHHHHHhHHhhhcC-CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHH
Q 015454 44 LLRGIYQ-YGFEK-PSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKV 120 (406)
Q Consensus 44 i~~~l~~-~~~~~-l~~~Q~~~~~~i~~~-~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~ 120 (406)
+.++|++ +|+.. -++.|..|+..+.++ +++.+++|||+||+++|.+|.+-. +..+|++.|..+|+.++.+-
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQiDH 80 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQIDH 80 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHHHH
Confidence 4455544 45543 389999999988775 799999999999999999998754 33789999999999999998
Q ss_pred HHHhccCcceeEEEEECCcchHHhHHH------HhcCCCEEEechHHHHHHH----HccCCCcCCcceeecchhhHHhcc
Q 015454 121 ILAIGDFINIQAHACVGGKSVGEDIRK------LEHGVHVVSGTPGRVCDMI----KRKTLRTRAIKLLVLDESDEMLSR 190 (406)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~iii~T~~~l~~~l----~~~~~~~~~~~~vV~DE~h~~~~~ 190 (406)
+.++. +.+..+....+..++.+. ......++..||+...... .+.......+.++|+||+|..+.|
T Consensus 81 L~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQW 156 (641)
T KOG0352|consen 81 LKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQW 156 (641)
T ss_pred HHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhh
Confidence 87765 223333333232222221 1233678888998653221 122233455789999999999988
Q ss_pred C--cHHHH---HHHHHhCCCCceEEEEEecCChHHHHHHHhc--CCCCeEEEecCCccccCCceEEEEEe--cccccHHH
Q 015454 191 G--FKDQI---YDVYRYLPPDLQVVLISATLPHEILEMTTKF--MTDPVKILVKRDELTLEGIKQFFVAV--EREEWKFD 261 (406)
Q Consensus 191 ~--~~~~~---~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 261 (406)
+ |+..+ ..+...++ ....+.+|||.++...+.+..- +.+|+.+..-+.. ..+ .+|... ...++-..
T Consensus 157 GHDFRPDYL~LG~LRS~~~-~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F--R~N--LFYD~~~K~~I~D~~~ 231 (641)
T KOG0352|consen 157 GHDFRPDYLTLGSLRSVCP-GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF--RDN--LFYDNHMKSFITDCLT 231 (641)
T ss_pred ccccCcchhhhhhHHhhCC-CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch--hhh--hhHHHHHHHHhhhHhH
Confidence 6 44444 34444443 4568999999999888866543 4455544322211 111 111111 11112223
Q ss_pred HHHHHHhhcC-------------CcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEE
Q 015454 262 TLCDLYDTLT-------------ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLIT 328 (406)
Q Consensus 262 ~l~~~~~~~~-------------~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~ 328 (406)
.|..+-.... .+-.||||.++++++.++-.|...|++...||+++...+|.++.+.|.+++..|+++
T Consensus 232 ~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~A 311 (641)
T KOG0352|consen 232 VLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAA 311 (641)
T ss_pred hHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEE
Confidence 3333322111 135799999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHH
Q 015454 329 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYY 391 (406)
Q Consensus 329 t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
|.++++|+|-|++++|++++++.|+..|-|-.||+||+|+++.|-+|+...|...+.-+.+.-
T Consensus 312 T~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e 374 (641)
T KOG0352|consen 312 TVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGE 374 (641)
T ss_pred EeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhH
Confidence 999999999999999999999999999999999999999999999999999988877765543
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=4.1e-35 Score=264.86 Aligned_cols=289 Identities=15% Similarity=0.178 Sum_probs=198.5
Q ss_pred HHHHhHHhhhcCCc--EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccC----cceeE
Q 015454 59 IQQRAVMPIIKGRD--VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF----INIQA 132 (406)
Q Consensus 59 ~Q~~~~~~i~~~~~--~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~----~~~~~ 132 (406)
||.++++.+.++.+ +++++|||||||.+++++++.. +.++++++|+++|++|+++.+..+... .+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 69999999999864 7889999999999999888742 335899999999999999998887532 23445
Q ss_pred EEEECCcchH--H------------------hHHHHhcCCCEEEechHHHHHHHHccC--------CCcCCcceeecchh
Q 015454 133 HACVGGKSVG--E------------------DIRKLEHGVHVVSGTPGRVCDMIKRKT--------LRTRAIKLLVLDES 184 (406)
Q Consensus 133 ~~~~~~~~~~--~------------------~~~~~~~~~~iii~T~~~l~~~l~~~~--------~~~~~~~~vV~DE~ 184 (406)
..+.|....+ . +.....+.+.|+++||+.|..++.... ....++++||+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 5555542211 0 001112467899999999986654311 12467999999999
Q ss_pred hHHhccCcH-----HHHHHHHHhCCCCceEEEEEecCChHHHHHHHhc--CCCCeEEEecCCcc---------c------
Q 015454 185 DEMLSRGFK-----DQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF--MTDPVKILVKRDEL---------T------ 242 (406)
Q Consensus 185 h~~~~~~~~-----~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~--~~~~~~~~~~~~~~---------~------ 242 (406)
|.+..+... .....++.......+++++|||+++.+...+... .+.+.......... .
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 998754321 1223333333345789999999999888877764 33333222111000 0
Q ss_pred ---cCCceEEEEEecccccHHHHHHH-------HHhhcCCcceEEEecchhhHHHHHHHHhcCC--ceEEEeecCCCHHH
Q 015454 243 ---LEGIKQFFVAVEREEWKFDTLCD-------LYDTLTITQAVIFCNTKRKVDWLTEKMRGYN--FTVSSMHGDMPQKE 310 (406)
Q Consensus 243 ---~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~ 310 (406)
.+.+...+.. ....+...+.. .++...++++||||++++.++.+++.|++.+ +.+..+||.+++.+
T Consensus 235 ~~~~~~i~~~~~~--~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~ 312 (357)
T TIGR03158 235 RPVLPPVELELIP--APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKD 312 (357)
T ss_pred ceeccceEEEEEe--CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHH
Confidence 0123332222 22223333322 2222345799999999999999999999764 57888999999998
Q ss_pred HHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhcc
Q 015454 311 RDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSG 364 (406)
Q Consensus 311 r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~ 364 (406)
|.+. ++.+|||||+++++|+|+|.. +|| ++ |.+...|+||+||+|
T Consensus 313 R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 313 RERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 8654 478999999999999999876 555 34 889999999999986
No 70
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=8.9e-35 Score=293.56 Aligned_cols=282 Identities=20% Similarity=0.295 Sum_probs=208.2
Q ss_pred CCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCccee
Q 015454 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (406)
Q Consensus 52 ~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (406)
....|+++|..+++.++.|++++++||||+|||. +.+++...+.. .+.+++|++||++|+.|+.+.+..+....++.
T Consensus 75 ~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~ 151 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--KGKRCYIILPTTLLVIQVAEKISSLAEKAGVG 151 (1171)
T ss_pred cCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCc
Confidence 3347999999999999999999999999999996 44555444332 35689999999999999999999988765544
Q ss_pred E---EEEECCcchHHhH---HHHh-cCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhc-----------cCcH
Q 015454 132 A---HACVGGKSVGEDI---RKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-----------RGFK 193 (406)
Q Consensus 132 ~---~~~~~~~~~~~~~---~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~-----------~~~~ 193 (406)
. ..++|+.+..++. ..+. .+++|+|+||++|.+.+.... . .++++|+||||.+.. .+|.
T Consensus 152 ~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~ 228 (1171)
T TIGR01054 152 TVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKASKNVDKLLKLLGFS 228 (1171)
T ss_pred eeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhccccHHHHHHHcCCC
Confidence 3 3456776655432 2233 358999999999988766522 2 799999999999987 3454
Q ss_pred HH-HHHH----------------------HHhCCCCce--EEEEEecC-ChHHHHHHHhcCCCCeEEEecCCccccCCce
Q 015454 194 DQ-IYDV----------------------YRYLPPDLQ--VVLISATL-PHEILEMTTKFMTDPVKILVKRDELTLEGIK 247 (406)
Q Consensus 194 ~~-~~~~----------------------~~~~~~~~~--~i~lSAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (406)
.. +..+ ++..+...| ++++|||. +...... ++.+...+.+........++.
T Consensus 229 ~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~---l~r~ll~~~v~~~~~~~r~I~ 305 (1171)
T TIGR01054 229 EELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAK---LFRELLGFEVGGGSDTLRNVV 305 (1171)
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHH---HcccccceEecCccccccceE
Confidence 42 3332 222334434 56789994 4433322 233444444444444556667
Q ss_pred EEEEEecccccHHHHHHHHHhhcCCcceEEEecch---hhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCc
Q 015454 248 QFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK---RKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTR 324 (406)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 324 (406)
+.+..... +...+..+++... .++||||++. +.++.+++.|.+.|+++..+||+++ ...+++|++|+++
T Consensus 306 ~~~~~~~~---~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G~~~ 377 (1171)
T TIGR01054 306 DVYVEDED---LKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEGEID 377 (1171)
T ss_pred EEEEeccc---HHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcCCCC
Confidence 66654432 2345666666553 6899999999 9999999999999999999999986 3689999999999
Q ss_pred EEEEc----CcccCCCCCCC-CCEEEEecCC
Q 015454 325 VLITT----DVWARGLDVQQ-VSLVINYDLP 350 (406)
Q Consensus 325 vli~t----~~~~~G~d~~~-~~~vi~~~~~ 350 (406)
|||+| +.+++|+|+|+ +++||+++.|
T Consensus 378 vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 378 VLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred EEEEeccccCcccccCCCCccccEEEEECCC
Confidence 99995 89999999999 8999997765
No 71
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-35 Score=286.64 Aligned_cols=332 Identities=20% Similarity=0.268 Sum_probs=260.3
Q ss_pred HHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 46 RGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 46 ~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
.....+|...+++.|.+++...+.|+++++.+|||.||+++|.+|++-. ++.+++|.|..+|.+.+...+...
T Consensus 255 ~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L~~~- 327 (941)
T KOG0351|consen 255 LLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHLSKK- 327 (941)
T ss_pred HHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhhhhc-
Confidence 3344579999999999999999999999999999999999999887644 336999999999999988877443
Q ss_pred cCcceeEEEEECCcchHHhHH---HHhc---CCCEEEechHHHHHH--HHccCCCcCC---cceeecchhhHHhccC--c
Q 015454 126 DFINIQAHACVGGKSVGEDIR---KLEH---GVHVVSGTPGRVCDM--IKRKTLRTRA---IKLLVLDESDEMLSRG--F 192 (406)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~iii~T~~~l~~~--l~~~~~~~~~---~~~vV~DE~h~~~~~~--~ 192 (406)
++....+.++....++.. .+.. ..+|+..||+++... +......+.. +.++|+||||..+.|+ |
T Consensus 328 ---~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdF 404 (941)
T KOG0351|consen 328 ---GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDF 404 (941)
T ss_pred ---CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccc
Confidence 366666666655543322 2222 478999999988642 1222222333 7889999999999886 5
Q ss_pred HHHHH---HHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhh
Q 015454 193 KDQIY---DVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 269 (406)
Q Consensus 193 ~~~~~---~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (406)
+..+. .+...++. ..++++|||.+..+...+...+...... ........++....+..-.........+...-..
T Consensus 405 Rp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~-~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~ 482 (941)
T KOG0351|consen 405 RPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPE-LFKSSFNRPNLKYEVSPKTDKDALLDILEESKLR 482 (941)
T ss_pred cHHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcc-eecccCCCCCceEEEEeccCccchHHHHHHhhhc
Confidence 54444 33444443 5699999999998888887776544333 2334455555554444443333344445555556
Q ss_pred cCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecC
Q 015454 270 LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL 349 (406)
Q Consensus 270 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 349 (406)
++...+||||.++..++.+...|...++.+..||++|+..+|..+...|..++++|++||=++++|+|.|+++.||+++.
T Consensus 483 ~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~l 562 (941)
T KOG0351|consen 483 HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSL 562 (941)
T ss_pred CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCC
Confidence 66678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHH
Q 015454 350 PNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQ 389 (406)
Q Consensus 350 ~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~ 389 (406)
|.+...|.|-.|||||+|....|++|+...|...++.+..
T Consensus 563 Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 563 PKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred chhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 9999999999999999999999999999998877776654
No 72
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.4e-34 Score=268.90 Aligned_cols=318 Identities=17% Similarity=0.201 Sum_probs=240.7
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|. .|++.|..+++.++.|+ +..+.||+|||+++.+|++..... +..++|++|++.|+.|.++++..+....++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---G~~v~VvTptreLA~qdae~~~~l~~~lGl 173 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---GLPVHVITVNDYLAERDAELMRPLYEALGL 173 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---CCeEEEEcCcHHHHHHHHHHHHHHHhhcCC
Confidence 355 79999999999999998 999999999999999999977543 457999999999999999999999999999
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHH-HHHHHccCC-------------------------CcCCcceeecchh
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKTL-------------------------RTRAIKLLVLDES 184 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~~~-------------------------~~~~~~~vV~DE~ 184 (406)
++..+.++.+.. .+....+++|+++|...| .+++.++.. ....+.+.|+||+
T Consensus 174 sv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEv 251 (656)
T PRK12898 174 TVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEA 251 (656)
T ss_pred EEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecc
Confidence 999999987643 344456789999998877 344444321 1255789999999
Q ss_pred hHHhccC------------------cHHHHHHHHHhCC------------------------------------------
Q 015454 185 DEMLSRG------------------FKDQIYDVYRYLP------------------------------------------ 204 (406)
Q Consensus 185 h~~~~~~------------------~~~~~~~~~~~~~------------------------------------------ 204 (406)
+.++-.. .......+...+.
T Consensus 252 DSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~ 331 (656)
T PRK12898 252 DSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRRE 331 (656)
T ss_pred cceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHH
Confidence 9853110 0000011111110
Q ss_pred ---------------------------------------------------------------------------CCceE
Q 015454 205 ---------------------------------------------------------------------------PDLQV 209 (406)
Q Consensus 205 ---------------------------------------------------------------------------~~~~~ 209 (406)
.-.++
T Consensus 332 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl 411 (656)
T PRK12898 332 ELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRL 411 (656)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHH
Confidence 00478
Q ss_pred EEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcC--CcceEEEecchhhHHH
Q 015454 210 VLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDW 287 (406)
Q Consensus 210 i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~k~lif~~~~~~~~~ 287 (406)
.+||||.+....++...+..++..+......... ..+.+...+ ...+...+...+.... ..++||||++++.++.
T Consensus 412 ~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~--~~~~~v~~t-~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~ 488 (656)
T PRK12898 412 AGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRR--HLPDEVFLT-AAAKWAAVAARVRELHAQGRPVLVGTRSVAASER 488 (656)
T ss_pred hcccCcChHHHHHHHHHHCCCeEEeCCCCCccce--ecCCEEEeC-HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 8999999887666766666665554443333211 222233333 4447778888776542 4689999999999999
Q ss_pred HHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCC---CCC-----EEEEecCCCChhhhHhh
Q 015454 288 LTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ---QVS-----LVINYDLPNNRELYIHR 359 (406)
Q Consensus 288 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~---~~~-----~vi~~~~~~s~~~~~Q~ 359 (406)
+++.|...|+++..+||..+ +++..+..+..+...|+|||+++++|+|++ ++. +||.++.|.+...|.|+
T Consensus 489 L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr 566 (656)
T PRK12898 489 LSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQL 566 (656)
T ss_pred HHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHh
Confidence 99999999999999999854 455555566666678999999999999999 665 99999999999999999
Q ss_pred hhhccCCCCceeEEEEeccCcH
Q 015454 360 IGRSGRFGRKGVAINFVKNDDI 381 (406)
Q Consensus 360 ~GR~~R~~~~~~~~~~~~~~~~ 381 (406)
+||+||.|.+|.++.|++.+|.
T Consensus 567 ~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 567 AGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred cccccCCCCCeEEEEEechhHH
Confidence 9999999999999999997653
No 73
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=5.1e-34 Score=270.80 Aligned_cols=317 Identities=16% Similarity=0.147 Sum_probs=225.0
Q ss_pred ChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEE
Q 015454 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (406)
Q Consensus 56 l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (406)
++|+|.+++..+..++..++.++||+|||+++++|++..... +..++|++|++.|+.|+++++..+....++++..+
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~---g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~ 145 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT---GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLG 145 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc---CCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 466666666655555558999999999999999998655544 33599999999999999999999998899998887
Q ss_pred ECCcc---hHHhHHHHhcCCCEEEechHHH-HHHHHcc------CCCcCCcceeecchhhHHhccC--------------
Q 015454 136 VGGKS---VGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEMLSRG-------------- 191 (406)
Q Consensus 136 ~~~~~---~~~~~~~~~~~~~iii~T~~~l-~~~l~~~------~~~~~~~~~vV~DE~h~~~~~~-------------- 191 (406)
.++.. .....+....+++|+++||+.| .+++..+ ...+..+.++|+||||.++-..
T Consensus 146 ~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~ 225 (762)
T TIGR03714 146 VVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQ 225 (762)
T ss_pred ECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccc
Confidence 76522 2223334446799999999999 4555432 2345778999999999974221
Q ss_pred --cHHHHHHHHHhCCC----------------------------------------------------------------
Q 015454 192 --FKDQIYDVYRYLPP---------------------------------------------------------------- 205 (406)
Q Consensus 192 --~~~~~~~~~~~~~~---------------------------------------------------------------- 205 (406)
.......+.+.+.+
T Consensus 226 ~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~ 305 (762)
T TIGR03714 226 SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTN 305 (762)
T ss_pred hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEEC
Confidence 01111111111110
Q ss_pred -----------------------------------------------------CceEEEEEecCChHHHHHHHhcCCCCe
Q 015454 206 -----------------------------------------------------DLQVVLISATLPHEILEMTTKFMTDPV 232 (406)
Q Consensus 206 -----------------------------------------------------~~~~i~lSAT~~~~~~~~~~~~~~~~~ 232 (406)
-.++.+||+|...+..++..-+....+
T Consensus 306 ~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~ 385 (762)
T TIGR03714 306 GEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVV 385 (762)
T ss_pred CEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEE
Confidence 046788888876554554433322221
Q ss_pred EEEecCCccccCCceEEEEEecccccHHHHHHHHHhh--cCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHH
Q 015454 233 KILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKE 310 (406)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 310 (406)
.+. ...+......-.........+...+...+.. ....++||||++++.++.+...|...|+++..+||.+...+
T Consensus 386 ~IP---t~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E 462 (762)
T TIGR03714 386 KIP---TNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKE 462 (762)
T ss_pred EcC---CCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHH
Confidence 111 1111111111111222334477777776654 33468999999999999999999999999999999999888
Q ss_pred HHHHHHHHhcCCCcEEEEcCcccCCCCCC---------CCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcH
Q 015454 311 RDAIMGEFRSGTTRVLITTDVWARGLDVQ---------QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 381 (406)
Q Consensus 311 r~~~~~~f~~~~~~vli~t~~~~~G~d~~---------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 381 (406)
+..+...++.| .|+|||+++++|+|+| ++.+|+.++.|..... .||.||+||.|.+|.++.|++.+|.
T Consensus 463 ~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 463 AQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred HHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 87777766555 7999999999999999 8899999999887666 9999999999999999999987643
No 74
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.9e-33 Score=257.96 Aligned_cols=324 Identities=20% Similarity=0.270 Sum_probs=240.9
Q ss_pred CCCHHHHHHH-HHCCCCCChHHHHHhHHhhhcC------CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcH
Q 015454 39 GIKDDLLRGI-YQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (406)
Q Consensus 39 ~l~~~i~~~l-~~~~~~~l~~~Q~~~~~~i~~~------~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~ 111 (406)
+....+.+.+ ...+| .||..|++++..|... .+-+++|..|||||.+++++++..+.. |.++.+.+||.
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---G~Q~ALMAPTE 321 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---GYQAALMAPTE 321 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---CCeeEEeccHH
Confidence 3444444444 44566 7999999999999864 457999999999999999999988854 56799999999
Q ss_pred HHHHHHHHHHHHhccCcceeEEEEECCcchHHhH---HHHhcC-CCEEEechHHHHHHHHccCCCcCCcceeecchhhHH
Q 015454 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDI---RKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (406)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~ 187 (406)
-|+.|.++.+.++....++.+..+.|......+. ..+.++ .+++|+|..- ..+...+.++.++|+||=|++
T Consensus 322 ILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL-----iQd~V~F~~LgLVIiDEQHRF 396 (677)
T COG1200 322 ILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL-----IQDKVEFHNLGLVIIDEQHRF 396 (677)
T ss_pred HHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh-----hhcceeecceeEEEEeccccc
Confidence 9999999999999998899999998876544433 333344 8999999543 345677889999999999986
Q ss_pred hccCcHHHHHHHHHhCCC-CceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHH
Q 015454 188 LSRGFKDQIYDVYRYLPP-DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 266 (406)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~-~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (406)
.-. -+..+..... .+.++.|||||-|....+....-.+.. ..+.-......+...+..........+.+..-
T Consensus 397 GV~-----QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS--~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~e 469 (677)
T COG1200 397 GVH-----QRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVS--IIDELPPGRKPITTVVIPHERRPEVYERIREE 469 (677)
T ss_pred cHH-----HHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccch--hhccCCCCCCceEEEEeccccHHHHHHHHHHH
Confidence 433 2233333334 578999999998865554433222211 11111222233444444444444344444444
Q ss_pred HhhcCCcceEEEecchhh--------HHHHHHHHhcC--CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCC
Q 015454 267 YDTLTITQAVIFCNTKRK--------VDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 336 (406)
Q Consensus 267 ~~~~~~~k~lif~~~~~~--------~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 336 (406)
+. .+.++.+.|+-+++ +..+++.|+.. +.++..+||.|+.+++++++.+|++|+++|||+|.+++.|+
T Consensus 470 i~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGV 547 (677)
T COG1200 470 IA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGV 547 (677)
T ss_pred HH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecc
Confidence 44 33589999986654 45566666642 45799999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecCC-CChhhhHhhhhhccCCCCceeEEEEeccCc
Q 015454 337 DVQQVSLVINYDLP-NNRELYIHRIGRSGRFGRKGVAINFVKNDD 380 (406)
Q Consensus 337 d~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 380 (406)
|+|+++.+++.++- ...++.=|.-||+||.+..+.|++++.+..
T Consensus 548 dVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 548 DVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred cCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999999988765 456778899999999999999999999876
No 75
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2e-33 Score=269.33 Aligned_cols=319 Identities=17% Similarity=0.202 Sum_probs=233.8
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|. .|++.|..+...+.+|+ +..+.||+|||+++++|++..... +..+.+++|++.|+.|.++++..+....++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl 148 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---GKGVHLITVNDYLAKRDAEEMGQVYEFLGL 148 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---CCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 366 78999998888777765 999999999999999999855443 456999999999999999999999999999
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHH-HHHHHccC------CCcCCcceeecchhhHHhccC------------
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT------LRTRAIKLLVLDESDEMLSRG------------ 191 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~~------~~~~~~~~vV~DE~h~~~~~~------------ 191 (406)
++..+.++.+.....+. ...++|+++||..| .+++..+. ...+.+.++|+||+|.++-..
T Consensus 149 ~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~ 227 (790)
T PRK09200 149 TVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPR 227 (790)
T ss_pred eEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCc
Confidence 99999998883333232 34589999999888 45454432 245778999999999853110
Q ss_pred ----cHHHHHHHHHhCCC--------------------------------------------------------------
Q 015454 192 ----FKDQIYDVYRYLPP-------------------------------------------------------------- 205 (406)
Q Consensus 192 ----~~~~~~~~~~~~~~-------------------------------------------------------------- 205 (406)
.......+...+..
T Consensus 228 ~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV 307 (790)
T PRK09200 228 VQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIV 307 (790)
T ss_pred cccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 01111111111110
Q ss_pred -------------------------------------------------------CceEEEEEecCChHHHHHHHhcCCC
Q 015454 206 -------------------------------------------------------DLQVVLISATLPHEILEMTTKFMTD 230 (406)
Q Consensus 206 -------------------------------------------------------~~~~i~lSAT~~~~~~~~~~~~~~~ 230 (406)
-.++.+||+|......++...+...
T Consensus 308 ~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~ 387 (790)
T PRK09200 308 YDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNME 387 (790)
T ss_pred ECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCc
Confidence 0367788888765444443333222
Q ss_pred CeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhc--CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCH
Q 015454 231 PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ 308 (406)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 308 (406)
.+.+ +...+......-.........+...+...+... ...++||||+|++.++.++..|...|+++..+||.+..
T Consensus 388 v~~I---Pt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~ 464 (790)
T PRK09200 388 VVQI---PTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAA 464 (790)
T ss_pred EEEC---CCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccH
Confidence 2221 111111111111111223344777777777542 45689999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCcccCCCCC---CCCC-----EEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCc
Q 015454 309 KERDAIMGEFRSGTTRVLITTDVWARGLDV---QQVS-----LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDD 380 (406)
Q Consensus 309 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~---~~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 380 (406)
.++..+...+..| .|+|||+++++|+|+ |++. +||.++.|.+...|.||.||+||.|.+|.++.|++.+|
T Consensus 465 ~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 465 KEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred HHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 8887777776655 799999999999999 6898 99999999999999999999999999999999998754
Q ss_pred H
Q 015454 381 I 381 (406)
Q Consensus 381 ~ 381 (406)
.
T Consensus 543 ~ 543 (790)
T PRK09200 543 D 543 (790)
T ss_pred H
Confidence 3
No 76
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=6.5e-34 Score=263.21 Aligned_cols=292 Identities=22% Similarity=0.280 Sum_probs=204.1
Q ss_pred CChHHHHHhHHhhhc----CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 55 KPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~----~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|+++|.+++..+.+ ++..++++|||+|||.+++..+.... ..+|||||+++|+.||.+.+....... .
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~------~~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~ 108 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK------RSTLVLVPTKELLDQWAEALKKFLLLN-D 108 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc------CCEEEEECcHHHHHHHHHHHHHhcCCc-c
Confidence 699999999999988 88999999999999988877665442 239999999999999998877755332 1
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEE
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i 210 (406)
.+..+.++..... . ..|.|+|.+++.....-..+..+.+++||+||||++....+......+.. ...++
T Consensus 109 ~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~----~~~~L 177 (442)
T COG1061 109 EIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSA----AYPRL 177 (442)
T ss_pred ccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhhc----cccee
Confidence 2222322222111 0 36999999999875311233344699999999999876654433332222 11189
Q ss_pred EEEecCChHH---HHHHHhcCCCCeEEEecCCcc-c---cCCceEEEEEe------------------------------
Q 015454 211 LISATLPHEI---LEMTTKFMTDPVKILVKRDEL-T---LEGIKQFFVAV------------------------------ 253 (406)
Q Consensus 211 ~lSAT~~~~~---~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~------------------------------ 253 (406)
+|||||.... ...+...++ +........+. . ...........
T Consensus 178 GLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (442)
T COG1061 178 GLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAE 256 (442)
T ss_pred eeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHH
Confidence 9999975321 111111121 11111110000 0 00001000000
Q ss_pred -------cccccHHHHHHHHHhhc-CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcE
Q 015454 254 -------EREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRV 325 (406)
Q Consensus 254 -------~~~~~~~~~l~~~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 325 (406)
.....+...+...+..+ ...+++||+.+..+++.++..+...+. +..+.+..+..+|..+++.|+.|.+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~ 335 (442)
T COG1061 257 NEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKV 335 (442)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 11122344444555544 356999999999999999999998877 889999999999999999999999999
Q ss_pred EEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCC
Q 015454 326 LITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRF 366 (406)
Q Consensus 326 li~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 366 (406)
|+++.++.+|+|+|+++++|+.++..|...|.||+||+-|.
T Consensus 336 lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 336 LVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred EEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999993
No 77
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=3.1e-34 Score=243.08 Aligned_cols=340 Identities=18% Similarity=0.273 Sum_probs=259.5
Q ss_pred cccCCCCHHHHHHHHH-CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHH
Q 015454 35 FDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (406)
Q Consensus 35 ~~~~~l~~~i~~~l~~-~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l 113 (406)
-++++++......|.. +....++|.|..+++..+.|++.++..|||.||+++|.+|.+-. .+.+|++||..+|
T Consensus 73 kd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~plisl 146 (695)
T KOG0353|consen 73 KDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLISL 146 (695)
T ss_pred cCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeechhHHH
Confidence 3567777777776654 45667899999999999999999999999999999999998754 4468999999999
Q ss_pred HHHHHHHHHHhccCcceeEEEEECCcchHHh------HHHHhcCCCEEEechHHHHHHH---H--ccCCCcCCcceeecc
Q 015454 114 ATQTEKVILAIGDFINIQAHACVGGKSVGED------IRKLEHGVHVVSGTPGRVCDMI---K--RKTLRTRAIKLLVLD 182 (406)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~iii~T~~~l~~~l---~--~~~~~~~~~~~vV~D 182 (406)
...+.-.++.++ +....+....+..+. +....+...++..||+.+.+.- . ...+....+.+|-+|
T Consensus 147 medqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaid 222 (695)
T KOG0353|consen 147 MEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAID 222 (695)
T ss_pred HHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeec
Confidence 999999888876 333333333332221 1223345678999999875321 1 123345668899999
Q ss_pred hhhHHhccC--cHHHH---HHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEE-eccc
Q 015454 183 ESDEMLSRG--FKDQI---YDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA-VERE 256 (406)
Q Consensus 183 E~h~~~~~~--~~~~~---~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 256 (406)
|+|..+.|+ |+..+ .-+.+.+ ++..++++|||............+.-...+... ...+.++....+.. ....
T Consensus 223 evhccsqwghdfr~dy~~l~ilkrqf-~~~~iigltatatn~vl~d~k~il~ie~~~tf~-a~fnr~nl~yev~qkp~n~ 300 (695)
T KOG0353|consen 223 EVHCCSQWGHDFRPDYKALGILKRQF-KGAPIIGLTATATNHVLDDAKDILCIEAAFTFR-AGFNRPNLKYEVRQKPGNE 300 (695)
T ss_pred ceeehhhhCcccCcchHHHHHHHHhC-CCCceeeeehhhhcchhhHHHHHHhHHhhheee-cccCCCCceeEeeeCCCCh
Confidence 999998886 44333 2334444 466699999999888777777766544333332 23444454443333 3344
Q ss_pred ccHHHHHHHHHhhc-CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCC
Q 015454 257 EWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARG 335 (406)
Q Consensus 257 ~~~~~~l~~~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 335 (406)
+.-.+.+..+++.. .+...+|||-+++.++.++..|+..|+....||+.+.+.++.-+-..|..|++.|+|+|-++++|
T Consensus 301 dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmg 380 (695)
T KOG0353|consen 301 DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMG 380 (695)
T ss_pred HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeeccc
Confidence 55666777777643 33468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEecCCCChhhhHh-------------------------------------------hhhhccCCCCceeE
Q 015454 336 LDVQQVSLVINYDLPNNRELYIH-------------------------------------------RIGRSGRFGRKGVA 372 (406)
Q Consensus 336 ~d~~~~~~vi~~~~~~s~~~~~Q-------------------------------------------~~GR~~R~~~~~~~ 372 (406)
+|-|++++||+.+.|.|+..|-| -.||+||.+++..|
T Consensus 381 idkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~c 460 (695)
T KOG0353|consen 381 IDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADC 460 (695)
T ss_pred CCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccE
Confidence 99999999999999999999999 67999999999999
Q ss_pred EEEeccCcHHHHHH
Q 015454 373 INFVKNDDIKILRD 386 (406)
Q Consensus 373 ~~~~~~~~~~~~~~ 386 (406)
++|+.--|.-.+..
T Consensus 461 ilyy~~~difk~ss 474 (695)
T KOG0353|consen 461 ILYYGFADIFKISS 474 (695)
T ss_pred EEEechHHHHhHHH
Confidence 99998766654433
No 78
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=266.80 Aligned_cols=329 Identities=17% Similarity=0.275 Sum_probs=241.8
Q ss_pred CCCCCChHHHHHhHHhhhc-CCcEEEECCCCCChhhHhHHHHHhhhcc-------CCCceeEEEEcCcHHHHHHHHHHHH
Q 015454 51 YGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDT-------SSREVQALILSPTRELATQTEKVIL 122 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~-~~~~il~~~tGsGKT~~~~~~i~~~~~~-------~~~~~~~lil~P~~~l~~q~~~~~~ 122 (406)
++|..++..|.++++...+ +.|.++|||||||||-++++.+++.+.+ ...+.+++|++|+++|+.++.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 4677899999999998776 5799999999999999999999998864 2356789999999999999999998
Q ss_pred HhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc---cCCCcCCcceeecchhhHHhccCcHHHHHHH
Q 015454 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR---KTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 199 (406)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~---~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~ 199 (406)
+-....++.+..+.|+........ ..++|+|+||++.--.-++ ..-.++.+++||+||+|.+-+.. ++.++.+
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~tei---~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~R-GpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTEI---ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDR-GPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHHH---HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcc-cchHHHH
Confidence 877788999999999988765542 3489999999986321111 12345778999999999876553 4444433
Q ss_pred H-------HhCCCCceEEEEEecCChHHHHHHHhcCCC--CeEEEecCCccccCCceEEEEEeccc--cc--------HH
Q 015454 200 Y-------RYLPPDLQVVLISATLPHEILEMTTKFMTD--PVKILVKRDELTLEGIKQFFVAVERE--EW--------KF 260 (406)
Q Consensus 200 ~-------~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~ 260 (406)
. +......+++++|||+|+ ...+..|+.- +..+......+.+..+.+.+...+.. .. ..
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN--~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPN--YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCC--HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 2 233456789999999998 4555555543 34555444445554555444333322 11 12
Q ss_pred HHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcC----C-------------------ceEEEeecCCCHHHHHHHHHH
Q 015454 261 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY----N-------------------FTVSSMHGDMPQKERDAIMGE 317 (406)
Q Consensus 261 ~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~----~-------------------~~~~~~~~~~~~~~r~~~~~~ 317 (406)
+.+.++++. +.+++|||.++....+.++.|.+. | ....++|+++...+|..+.+.
T Consensus 340 ~kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 340 DKVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 223333333 258999999998887777777542 1 236789999999999999999
Q ss_pred HhcCCCcEEEEcCcccCCCCCCCCCEEEEecCC-----------CChhhhHhhhhhccCCC--CceeEEEEeccCcHHHH
Q 015454 318 FRSGTTRVLITTDVWARGLDVQQVSLVINYDLP-----------NNRELYIHRIGRSGRFG--RKGVAINFVKNDDIKIL 384 (406)
Q Consensus 318 f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~-----------~s~~~~~Q~~GR~~R~~--~~~~~~~~~~~~~~~~~ 384 (406)
|..|.++||+||..+..|+|+|+-.++| -+.+ .+..+.+|..|||||.. ..|.++++.+.+-.+++
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViI-KGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVII-KGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHY 496 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEe-cCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHH
Confidence 9999999999999999999998654444 3322 35677899999999974 55888888888766666
Q ss_pred HHHH
Q 015454 385 RDIE 388 (406)
Q Consensus 385 ~~~~ 388 (406)
..+.
T Consensus 497 ~sLl 500 (1230)
T KOG0952|consen 497 ESLL 500 (1230)
T ss_pred HHHH
Confidence 6553
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.1e-32 Score=260.20 Aligned_cols=318 Identities=19% Similarity=0.236 Sum_probs=234.3
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|+ .|++.|.-....+..|+ +..++||+|||+++.+|++..... +..+.+++|+..|+.|.++++..+....++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---G~~V~VvTpt~~LA~qdae~~~~l~~~LGL 126 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAEWMGQVYRFLGL 126 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---CCCEEEEcCCHHHHHHHHHHHHHHhccCCC
Confidence 355 68888888887777664 999999999999999998533333 335999999999999999999999999999
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHH-HHHHHcc------CCCcCCcceeecchhhHHhccC------------
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEMLSRG------------ 191 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~------~~~~~~~~~vV~DE~h~~~~~~------------ 191 (406)
++..+.++.+..++.... .++|+++||..| .+++..+ ...++.+.++|+||+|.++-..
T Consensus 127 sv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~ 204 (745)
T TIGR00963 127 SVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAE 204 (745)
T ss_pred eEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCC
Confidence 999999988865544443 479999999999 7777765 2456889999999999864310
Q ss_pred ----cHHHHHHHHHhCCC--------------------------------------------------------------
Q 015454 192 ----FKDQIYDVYRYLPP-------------------------------------------------------------- 205 (406)
Q Consensus 192 ----~~~~~~~~~~~~~~-------------------------------------------------------------- 205 (406)
.......+.+.+..
T Consensus 205 ~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 284 (745)
T TIGR00963 205 KSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIV 284 (745)
T ss_pred CchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 00000111111100
Q ss_pred -------------------------------------------------------CceEEEEEecCChHHHHHHHhcCCC
Q 015454 206 -------------------------------------------------------DLQVVLISATLPHEILEMTTKFMTD 230 (406)
Q Consensus 206 -------------------------------------------------------~~~~i~lSAT~~~~~~~~~~~~~~~ 230 (406)
-.++.+||+|...+..++..-+...
T Consensus 285 ~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~ 364 (745)
T TIGR00963 285 RDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLE 364 (745)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCC
Confidence 0357788888765544443333332
Q ss_pred CeEEEecCCccccCCceEEEEEecccccHHHHHHHHH-hhc-CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCH
Q 015454 231 PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY-DTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ 308 (406)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 308 (406)
.+.+............. ........+...+...+ +.+ .+.++||||++++.++.+++.|.+.|+++..+|+. +
T Consensus 365 vv~IPtnkp~~R~d~~d---~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q 439 (745)
T TIGR00963 365 VVVVPTNRPVIRKDLSD---LVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--N 439 (745)
T ss_pred EEEeCCCCCeeeeeCCC---eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--h
Confidence 22221111111111111 11222333555555444 222 34589999999999999999999999999999998 7
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCcccCCCCCCC-------CCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcH
Q 015454 309 KERDAIMGEFRSGTTRVLITTDVWARGLDVQQ-------VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 381 (406)
Q Consensus 309 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~-------~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 381 (406)
.+|+..+..|..+...|+|||+++++|+|++. ..+||.++.|.|...+.|+.||+||.|.+|.+..|++.+|.
T Consensus 440 ~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 440 HEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred HHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 78899999999999999999999999999987 55999999999999999999999999999999999987754
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=5.1e-32 Score=265.93 Aligned_cols=334 Identities=17% Similarity=0.176 Sum_probs=218.9
Q ss_pred CChHHHHHhHHhhhc--CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeE
Q 015454 55 KPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~--~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (406)
.|.|||.+++..+.. ..++++...+|.|||..+.+.+...+..+ ...++||+||. .|..||..++.+... +..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~rvLIVvP~-sL~~QW~~El~~kF~---l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-RAERVLILVPE-TLQHQWLVEMLRRFN---LRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCCcEEEEcCH-HHHHHHHHHHHHHhC---CCe
Confidence 589999999887765 35799999999999988876555554443 34579999995 899999999865321 223
Q ss_pred EEEECCcchHHh--HHHHhcCCCEEEechHHHHHHH-HccCCCcCCcceeecchhhHHhccC--cHHHHHHHHHhCCCCc
Q 015454 133 HACVGGKSVGED--IRKLEHGVHVVSGTPGRVCDMI-KRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYDVYRYLPPDL 207 (406)
Q Consensus 133 ~~~~~~~~~~~~--~~~~~~~~~iii~T~~~l~~~l-~~~~~~~~~~~~vV~DE~h~~~~~~--~~~~~~~~~~~~~~~~ 207 (406)
..+.++...... ........+++|+|++.+...- ....+....+++||+||||++.... .......+.......+
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~ 306 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIP 306 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccC
Confidence 222222111000 0011123689999998887421 1112333468999999999986321 1112222222222345
Q ss_pred eEEEEEecCChH----------------------HH---------------------------HHHHhcCCCC-------
Q 015454 208 QVVLISATLPHE----------------------IL---------------------------EMTTKFMTDP------- 231 (406)
Q Consensus 208 ~~i~lSAT~~~~----------------------~~---------------------------~~~~~~~~~~------- 231 (406)
.++++||||... .. ..+..++.+.
T Consensus 307 ~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~ 386 (956)
T PRK04914 307 GVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQ 386 (956)
T ss_pred CEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHh
Confidence 689999997310 00 0000000000
Q ss_pred --------------------------eEEEecC-----CccccCCceEEEEE----------------------------
Q 015454 232 --------------------------VKILVKR-----DELTLEGIKQFFVA---------------------------- 252 (406)
Q Consensus 232 --------------------------~~~~~~~-----~~~~~~~~~~~~~~---------------------------- 252 (406)
..+.... ...+......+...
T Consensus 387 ~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~ 466 (956)
T PRK04914 387 AANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQ 466 (956)
T ss_pred hhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHH
Confidence 0000000 00000000000000
Q ss_pred -------ecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHH-hcCCceEEEeecCCCHHHHHHHHHHHhcC--C
Q 015454 253 -------VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM-RGYNFTVSSMHGDMPQKERDAIMGEFRSG--T 322 (406)
Q Consensus 253 -------~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~ 322 (406)
....+.|.+.|..+++.....|+||||+++..+..+.+.| ...|+++..+||+++..+|.++++.|+++ .
T Consensus 467 ~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~ 546 (956)
T PRK04914 467 EFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDG 546 (956)
T ss_pred HHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCC
Confidence 0011235666777787777789999999999999999999 56799999999999999999999999974 5
Q ss_pred CcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHcc
Q 015454 323 TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYST 393 (406)
Q Consensus 323 ~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
..|||||.++++|+|++.+++||+++.|+++..|.||+||++|.|+++.+.++.....-..-+.+.+.+.+
T Consensus 547 ~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 547 AQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred ccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999987777665433334455555544
No 81
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=236.52 Aligned_cols=278 Identities=33% Similarity=0.509 Sum_probs=215.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccC---cceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceee
Q 015454 104 ALILSPTRELATQTEKVILAIGDF---INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (406)
Q Consensus 104 ~lil~P~~~l~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV 180 (406)
++|+-|+++|++|.+..++++... ..++-..+.+|.-..++...+.++.+|+|+||.++...+......+..++++|
T Consensus 289 avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlv 368 (725)
T KOG0349|consen 289 AVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLV 368 (725)
T ss_pred eeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEEE
Confidence 899999999999999977666433 33444466788888888888899999999999999999999999999999999
Q ss_pred cchhhHHhccCcHHHHHHHHHhCCC------CceEEEEEecCCh-HHHHHHHhcCCCCeEEEecCCccccCCceEEEEEe
Q 015454 181 LDESDEMLSRGFKDQIYDVYRYLPP------DLQVVLISATLPH-EILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAV 253 (406)
Q Consensus 181 ~DE~h~~~~~~~~~~~~~~~~~~~~------~~~~i~lSAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (406)
+||++.++..++.+.+.++...+++ .+|.+..|||+.. +...+..+.+.-|.-+....++..++...++...+
T Consensus 369 lDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~lv 448 (725)
T KOG0349|consen 369 LDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLV 448 (725)
T ss_pred ecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceeec
Confidence 9999999999999888888877763 5788999999853 22233334444455554444444444433333222
Q ss_pred ccc-cc--------------------------------HHHHH-----HHHHhhcCCcceEEEecchhhHHHHHHHHhcC
Q 015454 254 ERE-EW--------------------------------KFDTL-----CDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY 295 (406)
Q Consensus 254 ~~~-~~--------------------------------~~~~l-----~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~ 295 (406)
... +. ....+ ...++++...++||||.+...++.+.+.+.+.
T Consensus 449 ~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qk 528 (725)
T KOG0349|consen 449 CPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQK 528 (725)
T ss_pred CCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHc
Confidence 111 11 11111 12334445578999999999999999999875
Q ss_pred C---ceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeE
Q 015454 296 N---FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 372 (406)
Q Consensus 296 ~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~ 372 (406)
| +.+..+||+..+.+|.+-++.|+.++.++||||+++.+|+|+..+-++|.+..|-....|.+|+||+||.-+-|-+
T Consensus 529 gg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermgla 608 (725)
T KOG0349|consen 529 GGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLA 608 (725)
T ss_pred CCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhccee
Confidence 4 5899999999999999999999999999999999999999999999999999999999999999999998776777
Q ss_pred EEEeccCcH
Q 015454 373 INFVKNDDI 381 (406)
Q Consensus 373 ~~~~~~~~~ 381 (406)
+.++....+
T Consensus 609 islvat~~e 617 (725)
T KOG0349|consen 609 ISLVATVPE 617 (725)
T ss_pred EEEeeccch
Confidence 766654433
No 82
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=3e-31 Score=264.20 Aligned_cols=302 Identities=20% Similarity=0.323 Sum_probs=203.6
Q ss_pred HHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCc----HHHHHHHHHHHHH-hccCcceeEE
Q 015454 59 IQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT----RELATQTEKVILA-IGDFINIQAH 133 (406)
Q Consensus 59 ~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~----~~l~~q~~~~~~~-~~~~~~~~~~ 133 (406)
+-.+.+..+..++.++++|+||||||... ..++.....+. ...+++.-|. ++++.++++++.. ++...+..+.
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTTql-Pq~lle~g~g~-~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vr 155 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTTQL-PKICLELGRGV-KGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVR 155 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHcCCCC-CCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeec
Confidence 33456666667777899999999999742 22333322221 2234445575 4777777777654 3433333221
Q ss_pred EEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhH-HhccCcHH-HHHHHHHhCCCCceEEE
Q 015454 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE-MLSRGFKD-QIYDVYRYLPPDLQVVL 211 (406)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~-~~~~~~~~-~~~~~~~~~~~~~~~i~ 211 (406)
... ....+..|+++||+.|+..+..... +.++++||+||+|+ ..+.++.. .+..+... .++.|+++
T Consensus 156 -------f~~---~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlKvIL 223 (1294)
T PRK11131 156 -------FND---QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKVII 223 (1294)
T ss_pred -------Ccc---ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc-CCCceEEE
Confidence 111 1134579999999999998876544 88899999999995 55655443 22333222 24679999
Q ss_pred EEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccc-----cHHHHHHHHH---hhcCCcceEEEecchh
Q 015454 212 ISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE-----WKFDTLCDLY---DTLTITQAVIFCNTKR 283 (406)
Q Consensus 212 lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~---~~~~~~k~lif~~~~~ 283 (406)
+|||++.+ .+...+...+. +.+..... .+..+|....... .....+...+ .....+.+|||+++..
T Consensus 224 mSATid~e--~fs~~F~~apv-I~V~Gr~~---pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~ 297 (1294)
T PRK11131 224 TSATIDPE--RFSRHFNNAPI-IEVSGRTY---PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGER 297 (1294)
T ss_pred eeCCCCHH--HHHHHcCCCCE-EEEcCccc---cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHH
Confidence 99999763 34444444443 33333222 2344444432211 1222222221 1234478999999999
Q ss_pred hHHHHHHHHhcCCce---EEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecC-----------
Q 015454 284 KVDWLTEKMRGYNFT---VSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL----------- 349 (406)
Q Consensus 284 ~~~~l~~~l~~~~~~---~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~----------- 349 (406)
+++.+++.|.+.+++ +..+||+++..+|..+++. .|..+|||||+++++|+|+|++++||.++.
T Consensus 298 EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~ 375 (1294)
T PRK11131 298 EIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK 375 (1294)
T ss_pred HHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccC
Confidence 999999999987654 6789999999999999886 477899999999999999999999999863
Q ss_pred -------CCChhhhHhhhhhccCCCCceeEEEEeccCcHHH
Q 015454 350 -------PNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKI 383 (406)
Q Consensus 350 -------~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~ 383 (406)
+.|..+|.||.||+||. ++|.|+.++++.+...
T Consensus 376 ~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 376 VQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred cccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 24557899999999999 6999999999766543
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1.1e-30 Score=253.23 Aligned_cols=310 Identities=20% Similarity=0.248 Sum_probs=214.1
Q ss_pred CChHHHHHhHHhhhcC---CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCccee
Q 015454 55 KPSAIQQRAVMPIIKG---RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~---~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (406)
.|++.|.++++.+.++ .++++.++||||||.+|+.++...+.. +.++|+++|+++|+.|+.+.+++.. +..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 6899999999999874 789999999999999998877766643 4579999999999999999998743 356
Q ss_pred EEEEECCcchHHhHH---HH-hcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCc------HHHHHHHHH
Q 015454 132 AHACVGGKSVGEDIR---KL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF------KDQIYDVYR 201 (406)
Q Consensus 132 ~~~~~~~~~~~~~~~---~~-~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~------~~~~~~~~~ 201 (406)
+..++++.+..++.. .. ....+|+|+|+..+. ..+.++++||+||+|.....+. ...+ ....
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v-a~~r 289 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL-AVVR 289 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHH-HHHH
Confidence 778888776544332 22 345799999997664 3467899999999997653321 1122 2333
Q ss_pred hCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCc--cccCCceEEEEEec----------ccccHHHHHHHHHhh
Q 015454 202 YLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE--LTLEGIKQFFVAVE----------REEWKFDTLCDLYDT 269 (406)
Q Consensus 202 ~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~ 269 (406)
....+.+++++|||++.+......... ...+...... ...+.+. ..... -.....+.+.+.++.
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~g~--~~~~~l~~r~~~~~~p~v~--~id~~~~~~~~~~~~ls~~l~~~i~~~l~~ 365 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQGR--YRLLRLTKRAGGARLPEVE--IIDMRELLRGENGSFLSPPLLEAIKQRLER 365 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhccc--eeEEEeccccccCCCCeEE--EEechhhhhhcccCCCCHHHHHHHHHHHHc
Confidence 345678899999999876555443211 1111111111 1111111 11110 011122233333322
Q ss_pred cCCcceEEEecchh------------------------------------------------------------hHHHHH
Q 015454 270 LTITQAVIFCNTKR------------------------------------------------------------KVDWLT 289 (406)
Q Consensus 270 ~~~~k~lif~~~~~------------------------------------------------------------~~~~l~ 289 (406)
++++|||+|.+. -.+++.
T Consensus 366 --g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~ 443 (679)
T PRK05580 366 --GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLE 443 (679)
T ss_pred --CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHH
Confidence 247888876421 235667
Q ss_pred HHHhcC--CceEEEeecCCC--HHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCC------------h
Q 015454 290 EKMRGY--NFTVSSMHGDMP--QKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNN------------R 353 (406)
Q Consensus 290 ~~l~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s------------~ 353 (406)
+.|++. +.++..+|+++. ..+++.++++|++|+.+|||+|++++.|+|+|+++.|++++.... .
T Consensus 444 e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~ 523 (679)
T PRK05580 444 EELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTF 523 (679)
T ss_pred HHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHH
Confidence 777665 667889999986 457899999999999999999999999999999999987765422 2
Q ss_pred hhhHhhhhhccCCCCceeEEEEeccCcHHHH
Q 015454 354 ELYIHRIGRSGRFGRKGVAINFVKNDDIKIL 384 (406)
Q Consensus 354 ~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~ 384 (406)
..|.|++||+||.++.|.+++.....+...+
T Consensus 524 ~~l~q~~GRagR~~~~g~viiqT~~p~~~~~ 554 (679)
T PRK05580 524 QLLTQVAGRAGRAEKPGEVLIQTYHPEHPVI 554 (679)
T ss_pred HHHHHHHhhccCCCCCCEEEEEeCCCCCHHH
Confidence 5689999999999999999988776544333
No 84
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=5.9e-31 Score=221.37 Aligned_cols=200 Identities=47% Similarity=0.812 Sum_probs=180.4
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC--CCceeEEEEcCcHH
Q 015454 35 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS--SREVQALILSPTRE 112 (406)
Q Consensus 35 ~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~--~~~~~~lil~P~~~ 112 (406)
|+++++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+... ..+.+++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 6789999999999999999999999999999999999999999999999999999999888766 46778999999999
Q ss_pred HHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCc
Q 015454 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (406)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~ 192 (406)
|+.|+...+..+....++.+..+.++............+++|+|+||+.+...+.+....+.+++++|+||+|.+.+.++
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence 99999999999887778888888888887776666666789999999999999888878888999999999999988888
Q ss_pred HHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEE
Q 015454 193 KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKI 234 (406)
Q Consensus 193 ~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~ 234 (406)
...+..+.+.++...+++++|||+++.....+..++.+++.+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 888999999998899999999999998888888888777653
No 85
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=2.9e-30 Score=252.13 Aligned_cols=311 Identities=17% Similarity=0.196 Sum_probs=200.4
Q ss_pred CCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCc--ce
Q 015454 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI--NI 130 (406)
Q Consensus 53 ~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~--~~ 130 (406)
...|+|+|..+.........+++.+|||+|||.+++.++...+.. ....+++|..||+++++++++++.++.... ..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-GLADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 348999999885543345678999999999999988776654433 334579999999999999999987643211 23
Q ss_pred eEEEEECCcchHHhH---------------------HHHh------cCCCEEEechHHHHHHHHcc-CCCcCC----cce
Q 015454 131 QAHACVGGKSVGEDI---------------------RKLE------HGVHVVSGTPGRVCDMIKRK-TLRTRA----IKL 178 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~---------------------~~~~------~~~~iii~T~~~l~~~l~~~-~~~~~~----~~~ 178 (406)
.+...+|........ ..+. --.+|+|+|.++++..+... ...... -++
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~sv 442 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSV 442 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCe
Confidence 455555543311100 1111 12689999998887544332 111222 358
Q ss_pred eecchhhHHhccCcHHHHHHHHHhC-CCCceEEEEEecCChHHHHHHHhcCCCC----------eEEEecC---Ccccc-
Q 015454 179 LVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKFMTDP----------VKILVKR---DELTL- 243 (406)
Q Consensus 179 vV~DE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~~----------~~~~~~~---~~~~~- 243 (406)
||+||+|.+... ....+..+++.+ ....++|+||||++......+....... ....... .....
T Consensus 443 vIiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~ 521 (878)
T PRK09694 443 LIVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLS 521 (878)
T ss_pred EEEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecc
Confidence 999999987432 333444444443 2356699999999988776554422110 0000000 00000
Q ss_pred ------CCceEE-EEEe--cccccHHHHHHHHHhhc-CCcceEEEecchhhHHHHHHHHhcCC---ceEEEeecCCCHHH
Q 015454 244 ------EGIKQF-FVAV--EREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMRGYN---FTVSSMHGDMPQKE 310 (406)
Q Consensus 244 ------~~~~~~-~~~~--~~~~~~~~~l~~~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~ 310 (406)
...... .... .........+..+++.. .+++++||||+++.++.+++.|++.+ .++..+||+++..+
T Consensus 522 ~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~d 601 (878)
T PRK09694 522 AHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLND 601 (878)
T ss_pred ccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Confidence 000001 1111 11111223333344332 34689999999999999999998764 57999999999999
Q ss_pred H----HHHHHHH-hcCC---CcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCC
Q 015454 311 R----DAIMGEF-RSGT---TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 368 (406)
Q Consensus 311 r----~~~~~~f-~~~~---~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 368 (406)
| .++++.| ++|+ ..|||+|+++++|+|+ +++++|....| ...++||+||++|.++
T Consensus 602 R~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 602 RREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9 4567778 5665 4799999999999999 67888887655 6799999999999875
No 86
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.98 E-value=6.1e-30 Score=214.25 Aligned_cols=314 Identities=18% Similarity=0.182 Sum_probs=226.9
Q ss_pred CChHHHHHhHHhhh----cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~----~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
+|++.|+.+-..+. +.++.++.|-||+|||....-.+-..+.. |.++.+.+|+...+-+.+.++++. ..+.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~~vciASPRvDVclEl~~Rlk~a--F~~~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GGRVCIASPRVDVCLELYPRLKQA--FSNC 171 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CCeEEEecCcccchHHHHHHHHHh--hccC
Confidence 69999998766554 46899999999999998777666666643 567999999999999999999874 4446
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEE
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i 210 (406)
.+..++|+.....+ ..++|+|...|+++. +.++++|+||+|.+--..-.....++.+..+.....+
T Consensus 172 ~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 172 DIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred CeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEEEEeccccccccCCHHHHHHHHHhhcccCceE
Confidence 67788887665332 689999998888763 4489999999998643333344455666666677789
Q ss_pred EEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHH------HHHHHHHhhcCC--cceEEEecch
Q 015454 211 LISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF------DTLCDLYDTLTI--TQAVIFCNTK 282 (406)
Q Consensus 211 ~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~--~k~lif~~~~ 282 (406)
.+|||++..+...+...-.. .+.........+-....+.....-..++ ..|..+++.+.. .+++||++++
T Consensus 238 ylTATp~k~l~r~~~~g~~~--~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I 315 (441)
T COG4098 238 YLTATPTKKLERKILKGNLR--ILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEI 315 (441)
T ss_pred EEecCChHHHHHHhhhCCee--EeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecch
Confidence 99999998776665443222 2222222222222222222222222122 256666665543 5899999999
Q ss_pred hhHHHHHHHHhc-CC-ceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCC--CChhhhHh
Q 015454 283 RKVDWLTEKMRG-YN-FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP--NNRELYIH 358 (406)
Q Consensus 283 ~~~~~l~~~l~~-~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~--~s~~~~~Q 358 (406)
+..+.+++.|+. .. ..+..+|+. ...|.+.++.|++|+.++||+|.++++|+.+|++++.++-.-. .+.+.++|
T Consensus 316 ~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQ 393 (441)
T COG4098 316 ETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQ 393 (441)
T ss_pred HHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHH
Confidence 999999999954 33 355777876 5678899999999999999999999999999999998875544 67889999
Q ss_pred hhhhccCCC--CceeEEEEeccCcHHHHHHHHHHH
Q 015454 359 RIGRSGRFG--RKGVAINFVKNDDIKILRDIEQYY 391 (406)
Q Consensus 359 ~~GR~~R~~--~~~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
..||+||-- .+|.+..|.......+.....+.-
T Consensus 394 IaGRvGRs~~~PtGdv~FFH~G~skaM~~A~keIk 428 (441)
T COG4098 394 IAGRVGRSLERPTGDVLFFHYGKSKAMKQARKEIK 428 (441)
T ss_pred HhhhccCCCcCCCCcEEEEeccchHHHHHHHHHHH
Confidence 999999963 458888888877666555444433
No 87
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=6.6e-31 Score=245.66 Aligned_cols=311 Identities=18% Similarity=0.280 Sum_probs=233.9
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.+| +|..+|++|+.++.+|.++++.|+|.+|||+++-+++.-.. ..+.+++|.+|-++|.+|-++.++.-....+
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq---~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg- 368 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ---KHMTRTIYTSPIKALSNQKFRDFKETFGDVG- 368 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH---hhccceEecchhhhhccchHHHHHHhccccc-
Confidence 455 79999999999999999999999999999998887765443 3456899999999999999999987554433
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEE
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i 210 (406)
.++|+.... ....++|+|.+.|.+.+.++.--.+++..|||||+|.+.+...+..+.+++-++|...++|
T Consensus 369 ---LlTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~I 438 (1248)
T KOG0947|consen 369 ---LLTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFI 438 (1248)
T ss_pred ---eeecceeeC-------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEE
Confidence 566666543 3478999999999999998887788899999999999998888889999999999999999
Q ss_pred EEEecCChH--HHHHHHhcCCCCeEEEecCCccccCCceEEEEEe-----------------------------------
Q 015454 211 LISATLPHE--ILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAV----------------------------------- 253 (406)
Q Consensus 211 ~lSAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 253 (406)
++|||.++. ..+++.+.....+.++.-. ..+....++....
T Consensus 439 lLSATVPN~~EFA~WIGRtK~K~IyViST~--kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~ 516 (1248)
T KOG0947|consen 439 LLSATVPNTLEFADWIGRTKQKTIYVISTS--KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVE 516 (1248)
T ss_pred EEeccCCChHHHHHHhhhccCceEEEEecC--CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccc
Confidence 999999764 3345555444444433221 0000111100000
Q ss_pred -----------------------------ccccc---HHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCC-----
Q 015454 254 -----------------------------EREEW---KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYN----- 296 (406)
Q Consensus 254 -----------------------------~~~~~---~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~----- 296 (406)
..... .+-.+...++....-+++|||-|++.|++.++.|...+
T Consensus 517 ~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~ 596 (1248)
T KOG0947|consen 517 KSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSK 596 (1248)
T ss_pred cccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccch
Confidence 00000 12223333333333579999999999999999996542
Q ss_pred ----------------------------------ceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCC
Q 015454 297 ----------------------------------FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVS 342 (406)
Q Consensus 297 ----------------------------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 342 (406)
..+.++||++-+--++-+...|..|-++||+||.++.+|+|.|.-+
T Consensus 597 EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARt 676 (1248)
T KOG0947|consen 597 EKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPART 676 (1248)
T ss_pred hHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCcee
Confidence 1378899999999999999999999999999999999999998655
Q ss_pred EEEEecC---------CCChhhhHhhhhhccCCCCc--eeEEEEeccC
Q 015454 343 LVINYDL---------PNNRELYIHRIGRSGRFGRK--GVAINFVKND 379 (406)
Q Consensus 343 ~vi~~~~---------~~s~~~~~Q~~GR~~R~~~~--~~~~~~~~~~ 379 (406)
+|+. +. ...+..|.||.|||||+|-+ |.+++++...
T Consensus 677 vVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 677 VVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred EEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 5553 32 24678999999999999866 6666666554
No 88
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=2.8e-29 Score=243.29 Aligned_cols=321 Identities=19% Similarity=0.222 Sum_probs=244.8
Q ss_pred CCHHHHHHHH-HCCCCCChHHHHHhHHhhhcC------CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 40 IKDDLLRGIY-QYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 40 l~~~i~~~l~-~~~~~~l~~~Q~~~~~~i~~~------~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
.+......+. .++| .-|+-|..|+..+.+. .|-++||..|.|||.+++-+++.+... |+++.++|||.-
T Consensus 579 ~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---GKQVAvLVPTTl 654 (1139)
T COG1197 579 PDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---GKQVAVLVPTTL 654 (1139)
T ss_pred CChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---CCeEEEEcccHH
Confidence 3344444443 3566 5699999999998762 578999999999999999888877754 467999999999
Q ss_pred HHHHHHHHHHHhccCcceeEEEEECCcchHHhH---HHHh-cCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHh
Q 015454 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDI---RKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (406)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~ 188 (406)
|++|.++.++.-.....+++..+..=.+..+.. ..+. ...||+|+|. -+.+....+.+++++|+||=|++.
T Consensus 655 LA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-----rLL~kdv~FkdLGLlIIDEEqRFG 729 (1139)
T COG1197 655 LAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-----RLLSKDVKFKDLGLLIIDEEQRFG 729 (1139)
T ss_pred hHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech-----HhhCCCcEEecCCeEEEechhhcC
Confidence 999999999987778888887776544443333 2333 4489999995 333456778899999999999853
Q ss_pred ccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHh
Q 015454 189 SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (406)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 268 (406)
-.-.+.++.++.+.-++-|||||-|....+....+.+...+...+. ..-.+..++...+..--+-..+.++.
T Consensus 730 -----Vk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~--~R~pV~T~V~~~d~~~ireAI~REl~- 801 (1139)
T COG1197 730 -----VKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPE--DRLPVKTFVSEYDDLLIREAILRELL- 801 (1139)
T ss_pred -----ccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCC--CCcceEEEEecCChHHHHHHHHHHHh-
Confidence 3344556666678889999999998888887776665544432222 12223333333333221222222222
Q ss_pred hcCCcceEEEecchhhHHHHHHHHhcC--CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEE
Q 015454 269 TLTITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN 346 (406)
Q Consensus 269 ~~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~ 346 (406)
.++++....|.++..+.+++.|++. ..++.+.||.|+..+-+.++.+|.+|+.+|||||.+.+.|+|+|+++.+|+
T Consensus 802 --RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII 879 (1139)
T COG1197 802 --RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII 879 (1139)
T ss_pred --cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE
Confidence 3478999999999999999999875 347889999999999999999999999999999999999999999999998
Q ss_pred ecCC-CChhhhHhhhhhccCCCCceeEEEEeccC
Q 015454 347 YDLP-NNRELYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 347 ~~~~-~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
.+.. ...++.-|..||+||-++.+.|+.++.+.
T Consensus 880 e~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 880 ERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred eccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 8776 46788899999999999999999999964
No 89
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=9.2e-31 Score=239.06 Aligned_cols=317 Identities=18% Similarity=0.301 Sum_probs=236.7
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEE
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (406)
.|.|+|..++..+-.+.++++.|.|.+|||.++-+++...+.. +.+++|..|-++|.+|-++++..-.. .++.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~----DVGL 201 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFK----DVGL 201 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhc----ccce
Confidence 7899999999999999999999999999999999988877754 34699999999999999988865432 3445
Q ss_pred EECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEe
Q 015454 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (406)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 214 (406)
.+|+.... .....+|+|.+.|.+.+.++..-...+..|||||+|.+-+...+-.+..-+-.+|.+.+.+++||
T Consensus 202 MTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSA 274 (1041)
T KOG0948|consen 202 MTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSA 274 (1041)
T ss_pred eecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEec
Confidence 55655543 23678999999999999988888888999999999999888777777788888899999999999
Q ss_pred cCChH--HHHHHHhcCCCCeEEEecCCccccCCceEEEE---------Eeccc----ccH--------------------
Q 015454 215 TLPHE--ILEMTTKFMTDPVKILVKRDELTLEGIKQFFV---------AVERE----EWK-------------------- 259 (406)
Q Consensus 215 T~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~----~~~-------------------- 259 (406)
|+|+. ..+++...-..|..+.+- ++.+....++.+ .++.. ++.
T Consensus 275 TiPNA~qFAeWI~~ihkQPcHVVYT--dyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~ 352 (1041)
T KOG0948|consen 275 TIPNARQFAEWICHIHKQPCHVVYT--DYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKA 352 (1041)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEee--cCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccc
Confidence 99875 334555555555555432 222222222211 11111 000
Q ss_pred ------------------HHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCc------------------------
Q 015454 260 ------------------FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNF------------------------ 297 (406)
Q Consensus 260 ------------------~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~------------------------ 297 (406)
+..+...+-.....++|||+-++++|+.++-.+.+..+
T Consensus 353 ~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeD 432 (1041)
T KOG0948|consen 353 NKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEED 432 (1041)
T ss_pred ccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhh
Confidence 11111222222235799999999999999888865432
Q ss_pred ---------------eEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecC--------CCChh
Q 015454 298 ---------------TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL--------PNNRE 354 (406)
Q Consensus 298 ---------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~--------~~s~~ 354 (406)
.++++|+++-+.-++-+.-.|.+|-+++|+||.+++.|+|.|.-++|+..-- ..|..
T Consensus 433 r~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissG 512 (1041)
T KOG0948|consen 433 RELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSG 512 (1041)
T ss_pred ccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeeccc
Confidence 2889999999999999999999999999999999999999987666664221 13567
Q ss_pred hhHhhhhhccCCCCc--eeEEEEeccC-cHHHHHHH
Q 015454 355 LYIHRIGRSGRFGRK--GVAINFVKND-DIKILRDI 387 (406)
Q Consensus 355 ~~~Q~~GR~~R~~~~--~~~~~~~~~~-~~~~~~~~ 387 (406)
.|+||.|||||+|.+ |.|++++++. +....+.+
T Consensus 513 EYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m 548 (1041)
T KOG0948|consen 513 EYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDM 548 (1041)
T ss_pred ceEEecccccccCCCCCceEEEEecCcCCHHHHHHH
Confidence 899999999999977 7777777764 33433333
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=2e-29 Score=235.99 Aligned_cols=288 Identities=21% Similarity=0.267 Sum_probs=192.3
Q ss_pred EEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHh---HHHH-h
Q 015454 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED---IRKL-E 149 (406)
Q Consensus 74 il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~ 149 (406)
++.||||||||.+|+..+...+.. +.++||++|+++|+.|+.+.+++.. +..+..++++.+..++ +... .
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 478999999999998766655533 4579999999999999999998743 2456677777655443 2222 2
Q ss_pred cCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC-----cH-HHHHHHHHhCCCCceEEEEEecCChHHHHH
Q 015454 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----FK-DQIYDVYRYLPPDLQVVLISATLPHEILEM 223 (406)
Q Consensus 150 ~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~-----~~-~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~ 223 (406)
...+|+|+|+..+. ..+.++++||+||.|.....+ +. ..+.. ......+.+++++||||+.+....
T Consensus 75 g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~-~ra~~~~~~vil~SATPsles~~~ 146 (505)
T TIGR00595 75 GEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAV-YRAKKFNCPVVLGSATPSLESYHN 146 (505)
T ss_pred CCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHH-HHHHhcCCCEEEEeCCCCHHHHHH
Confidence 45789999997664 346789999999999875332 11 12222 223335778999999988765554
Q ss_pred HHhcCCCCeEEEecCCccc-cCCceEEEEEeccc-------ccHHHHHHHHHhhcCCcceEEEecchhh-----------
Q 015454 224 TTKFMTDPVKILVKRDELT-LEGIKQFFVAVERE-------EWKFDTLCDLYDTLTITQAVIFCNTKRK----------- 284 (406)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~k~lif~~~~~~----------- 284 (406)
.... ............ .............. ....+.+.+.++. ++++|||+|.+..
T Consensus 147 ~~~g---~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~--g~qvLvflnrrGya~~~~C~~Cg~ 221 (505)
T TIGR00595 147 AKQK---AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAA--GEQSILFLNRRGYSKNLLCRSCGY 221 (505)
T ss_pred HhcC---CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHc--CCcEEEEEeCCcCCCeeEhhhCcC
Confidence 4321 111111111000 01111111111111 1122333333332 2579999765432
Q ss_pred -------------------------------------------------HHHHHHHHhcC--CceEEEeecCCCHHHH--
Q 015454 285 -------------------------------------------------VDWLTEKMRGY--NFTVSSMHGDMPQKER-- 311 (406)
Q Consensus 285 -------------------------------------------------~~~l~~~l~~~--~~~~~~~~~~~~~~~r-- 311 (406)
.+++.+.|++. +.++..+|++++...+
T Consensus 222 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~ 301 (505)
T TIGR00595 222 ILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAH 301 (505)
T ss_pred ccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHH
Confidence 36677777765 6688999999877665
Q ss_pred HHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCC------------ChhhhHhhhhhccCCCCceeEEEEeccC
Q 015454 312 DAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPN------------NRELYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 312 ~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
+.++++|++|+.+|||+|++++.|+|+|+++.|+.++... ....+.|+.||+||.++.|.+++.....
T Consensus 302 ~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p 381 (505)
T TIGR00595 302 EALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNP 381 (505)
T ss_pred HHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCC
Confidence 8999999999999999999999999999999997766542 2356899999999999999998776544
Q ss_pred c
Q 015454 380 D 380 (406)
Q Consensus 380 ~ 380 (406)
+
T Consensus 382 ~ 382 (505)
T TIGR00595 382 N 382 (505)
T ss_pred C
Confidence 3
No 91
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.4e-29 Score=242.41 Aligned_cols=339 Identities=18% Similarity=0.306 Sum_probs=245.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHhHHhhhcC-CcEEEECCCCCChhhHhHHHHHhhhccCCC--------ceeEEEEcCc
Q 015454 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSR--------EVQALILSPT 110 (406)
Q Consensus 40 l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~-~~~il~~~tGsGKT~~~~~~i~~~~~~~~~--------~~~~lil~P~ 110 (406)
+|+|-..++. |..++.+.|.......+.+ .+.++|||||+|||.++++.+++.+..+.+ ..++.|++|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 4555555554 5557999999999987775 689999999999999999999998854432 4579999999
Q ss_pred HHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc--cCCCcCCcceeecchhhHHh
Q 015454 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEML 188 (406)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~--~~~~~~~~~~vV~DE~h~~~ 188 (406)
++|+++|...+.+.....++.+....|+........ .+..++++||+..--.-++ .....+.++++|+||.|.+.
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 999999999999988899999999999877544321 3478999999986332222 11234568999999999874
Q ss_pred ccCcHHHHHHH----HHhC---CCCceEEEEEecCChHHHHHHHhcC-CCCeEEEecCCccccCCceEEEEEeccccc-H
Q 015454 189 SRGFKDQIYDV----YRYL---PPDLQVVLISATLPHEILEMTTKFM-TDPVKILVKRDELTLEGIKQFFVAVEREEW-K 259 (406)
Q Consensus 189 ~~~~~~~~~~~----~~~~---~~~~~~i~lSAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 259 (406)
+.. +..+.++ .+.. ..+++++++|||+|+ ......++ .++..+......+.+..+.+.+..+..... +
T Consensus 451 DdR-GpvLESIVaRt~r~ses~~e~~RlVGLSATLPN--y~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 451 DDR-GPVLESIVARTFRRSESTEEGSRLVGLSATLPN--YEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred ccc-chHHHHHHHHHHHHhhhcccCceeeeecccCCc--hhhhHHHhccCcccccccCcccCcCCccceEeccccCCchH
Confidence 432 3333222 2221 346889999999998 44444433 333444444455556566665555443221 1
Q ss_pred H------HHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcC-------------------------------------C
Q 015454 260 F------DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY-------------------------------------N 296 (406)
Q Consensus 260 ~------~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~-------------------------------------~ 296 (406)
. ....++++....+++|||+.++++..+.++.+++. .
T Consensus 528 ~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLp 607 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLP 607 (1674)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhh
Confidence 1 23345666666689999999998877777666521 2
Q ss_pred ceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEE----ecC------CCChhhhHhhhhhccCC
Q 015454 297 FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----YDL------PNNRELYIHRIGRSGRF 366 (406)
Q Consensus 297 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~~------~~s~~~~~Q~~GR~~R~ 366 (406)
+...++|++|++.+|..+.+.|.+|.++|+++|..++.|+|+|.-+++|- +++ +.++.+..||.||+||.
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 45889999999999999999999999999999999999999987665553 222 35788999999999998
Q ss_pred CCc--eeEEEEeccCcHHHHHH
Q 015454 367 GRK--GVAINFVKNDDIKILRD 386 (406)
Q Consensus 367 ~~~--~~~~~~~~~~~~~~~~~ 386 (406)
+-+ |.+++.....+..+...
T Consensus 688 ~~D~~gegiiit~~se~qyyls 709 (1674)
T KOG0951|consen 688 QYDTCGEGIIITDHSELQYYLS 709 (1674)
T ss_pred ccCcCCceeeccCchHhhhhHH
Confidence 654 77777777766655444
No 92
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=3.6e-29 Score=251.36 Aligned_cols=307 Identities=19% Similarity=0.267 Sum_probs=194.4
Q ss_pred CChHHHHHhHHhhhc----C-CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcc
Q 015454 55 KPSAIQQRAVMPIIK----G-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~----~-~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (406)
.||+||.+|+..+.+ | +++++++|||||||.+++..+.. +.......++||++|+++|+.|+.+.+..+.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~-L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYR-LLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHH-HHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 589999999987753 3 57899999999999886654433 33333456899999999999999999988643222
Q ss_pred eeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHcc-----CCCcCCcceeecchhhHHhcc--------------
Q 015454 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-----TLRTRAIKLLVLDESDEMLSR-------------- 190 (406)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~-----~~~~~~~~~vV~DE~h~~~~~-------------- 190 (406)
.......+....... .......|+|+|+++|.+.+... ......+++||+||||+....
T Consensus 492 ~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 492 QTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred cchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchh
Confidence 111111111111111 11234789999999998765321 134577899999999985310
Q ss_pred -CcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHh--------------cCC---CCeEEEec--CCccccCC-----
Q 015454 191 -GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTK--------------FMT---DPVKILVK--RDELTLEG----- 245 (406)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~--------------~~~---~~~~~~~~--~~~~~~~~----- 245 (406)
.+...+..++..+ +...+++||||.......... ++. .|..+... ........
T Consensus 570 ~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~ 647 (1123)
T PRK11448 570 LDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVE 647 (1123)
T ss_pred hhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhh
Confidence 0123455566544 245799999996433221111 111 01111110 00000000
Q ss_pred -ce----EE-EEEeccc--------------ccH----HHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcC------
Q 015454 246 -IK----QF-FVAVERE--------------EWK----FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY------ 295 (406)
Q Consensus 246 -~~----~~-~~~~~~~--------------~~~----~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~------ 295 (406)
.. .. ....+.. ... ...+...+.....+|+||||.++++|+.+.+.|.+.
T Consensus 648 ~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~ 727 (1123)
T PRK11448 648 VINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYG 727 (1123)
T ss_pred hcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 00 00 0000000 000 011222222223479999999999999888887642
Q ss_pred C---ceEEEeecCCCHHHHHHHHHHHhcCCC-cEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCC
Q 015454 296 N---FTVSSMHGDMPQKERDAIMGEFRSGTT-RVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 368 (406)
Q Consensus 296 ~---~~~~~~~~~~~~~~r~~~~~~f~~~~~-~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 368 (406)
+ ..+..++|+.+ ++..++++|+++.. .|+|+++++.+|+|+|.+++|++++++.|...|.||+||+.|...
T Consensus 728 ~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 728 QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 1 24566888865 56789999999887 689999999999999999999999999999999999999999754
No 93
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=2.9e-29 Score=250.97 Aligned_cols=303 Identities=18% Similarity=0.253 Sum_probs=204.9
Q ss_pred HHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHh-ccCcceeEEEEECCc
Q 015454 61 QRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI-GDFINIQAHACVGGK 139 (406)
Q Consensus 61 ~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~-~~~~~~~~~~~~~~~ 139 (406)
.+.+..+..++.++++|+||||||...-..++. ...+ ...++++.-|++--+...+..+.+. +...+..++......
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle-~~~~-~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~ 150 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLE-LGRG-SHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFH 150 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHH-cCCC-CCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCC
Confidence 456666767778899999999999754332222 2212 2335667779888777777776543 333333333222111
Q ss_pred chHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhH-HhccCcHHH-HHHHHHhCCCCceEEEEEecCC
Q 015454 140 SVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE-MLSRGFKDQ-IYDVYRYLPPDLQVVLISATLP 217 (406)
Q Consensus 140 ~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~-~~~~~~~~~-~~~~~~~~~~~~~~i~lSAT~~ 217 (406)
+. ......|.++|++.|+..+.... .+..+++||+||+|+ ..+.++... +..+... .+..++++||||++
T Consensus 151 ~~------~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmSATld 222 (1283)
T TIGR01967 151 DQ------VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITSATID 222 (1283)
T ss_pred cc------cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEeCCcC
Confidence 11 12457899999999998877654 378899999999995 656554432 4444433 35789999999997
Q ss_pred hHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEeccc-----ccHHHHH----HHHHhhcCCcceEEEecchhhHHHH
Q 015454 218 HEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVERE-----EWKFDTL----CDLYDTLTITQAVIFCNTKRKVDWL 288 (406)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l----~~~~~~~~~~k~lif~~~~~~~~~l 288 (406)
. ..+...+...+. +.+.....+ +..+|...... ....+.+ ..++.. ..+.+|||+++..+++.+
T Consensus 223 ~--~~fa~~F~~apv-I~V~Gr~~P---Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~-~~GdILVFLpg~~EI~~l 295 (1283)
T TIGR01967 223 P--ERFSRHFNNAPI-IEVSGRTYP---VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE-GPGDILIFLPGEREIRDA 295 (1283)
T ss_pred H--HHHHHHhcCCCE-EEECCCccc---ceeEEecccccccchhhhHHHHHHHHHHHHHhh-CCCCEEEeCCCHHHHHHH
Confidence 5 233333333343 333332222 22333322211 1122222 233332 447899999999999999
Q ss_pred HHHHhcCC---ceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCC---------------
Q 015454 289 TEKMRGYN---FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP--------------- 350 (406)
Q Consensus 289 ~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~--------------- 350 (406)
++.|.+.+ ..+..+||+++.+++..+++.+ +..+|||+|+++++|+|+|++++||..+.+
T Consensus 296 ~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~ 373 (1283)
T TIGR01967 296 AEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLP 373 (1283)
T ss_pred HHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccC
Confidence 99998764 4588999999999999987654 346999999999999999999999998843
Q ss_pred ---CChhhhHhhhhhccCCCCceeEEEEeccCcHHH
Q 015454 351 ---NNRELYIHRIGRSGRFGRKGVAINFVKNDDIKI 383 (406)
Q Consensus 351 ---~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~ 383 (406)
.|..++.||.||+||.+ +|.|+.++++.+...
T Consensus 374 ~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 374 IEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred CccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 36679999999999997 999999998765543
No 94
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=8.4e-29 Score=239.85 Aligned_cols=312 Identities=20% Similarity=0.304 Sum_probs=231.2
Q ss_pred HCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcc
Q 015454 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (406)
Q Consensus 50 ~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (406)
..+| .|.++|++++..+.++.+++++||||+|||++.-+++...+..+. +++|.+|.++|.+|.+.++........
T Consensus 115 ~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q---rviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 115 EYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ---RVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred hCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC---ceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 4566 799999999999999999999999999999999998888776543 499999999999999988865432222
Q ss_pred eeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceE
Q 015454 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209 (406)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (406)
-.++.+.|+... +.+..++|+|.+.|.+.+.........+..||+||+|.+.+...+..++.++-.+|...++
T Consensus 191 ~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~ 263 (1041)
T COG4581 191 DMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRF 263 (1041)
T ss_pred hhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcE
Confidence 334556666554 3458899999999999999888888999999999999999988888999999999999999
Q ss_pred EEEEecCChH--HHHHHHhcCCCCeEEEecCCccccCCceEEEEE-------eccccc----------------------
Q 015454 210 VLISATLPHE--ILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA-------VEREEW---------------------- 258 (406)
Q Consensus 210 i~lSAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---------------------- 258 (406)
+++|||.++. ...++...-..+..+.+... .+....+++.. ++....
T Consensus 264 v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~--RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~ 341 (1041)
T COG4581 264 VFLSATVPNAEEFAEWIQRVHSQPIHVVSTEH--RPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRE 341 (1041)
T ss_pred EEEeCCCCCHHHHHHHHHhccCCCeEEEeecC--CCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccc
Confidence 9999999753 34455544444444433211 11111111111 111000
Q ss_pred ------------------------HHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcC-------------------
Q 015454 259 ------------------------KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY------------------- 295 (406)
Q Consensus 259 ------------------------~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~------------------- 295 (406)
....+...+.....-++++|+-+++.|+..+..+...
T Consensus 342 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~ 421 (1041)
T COG4581 342 TDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHA 421 (1041)
T ss_pred cCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHH
Confidence 0011122222223347899999999998777766421
Q ss_pred ---------Cc-------------eEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecC----
Q 015454 296 ---------NF-------------TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL---- 349 (406)
Q Consensus 296 ---------~~-------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~---- 349 (406)
++ .+..+|+++=+..+..+...|..|-.+|+++|.+++.|+|.|.-++|+ .+.
T Consensus 422 i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K~d 500 (1041)
T COG4581 422 IGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSKFD 500 (1041)
T ss_pred HhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEEec
Confidence 11 155889999999999999999999999999999999999998655554 322
Q ss_pred -----CCChhhhHhhhhhccCCCCc--eeEEEE
Q 015454 350 -----PNNRELYIHRIGRSGRFGRK--GVAINF 375 (406)
Q Consensus 350 -----~~s~~~~~Q~~GR~~R~~~~--~~~~~~ 375 (406)
..++..|.|+.||+||.|.+ |.++++
T Consensus 501 G~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 501 GNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred CCceeecChhHHHHhhhhhccccccccceEEEe
Confidence 35788999999999999988 555555
No 95
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=8.8e-28 Score=237.05 Aligned_cols=313 Identities=17% Similarity=0.207 Sum_probs=210.0
Q ss_pred CChHHHHHhHHhhh----cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~----~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|++||.+.+..+. .|.++|+...+|.|||+..+..+............+||||| .++..||.+++.+++.. +
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP-~SlL~nW~~Ei~kw~p~--l 245 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAP-KSTLGNWMNEIRRFCPV--L 245 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeC-hHHHHHHHHHHHHHCCC--C
Confidence 68999999999875 46789999999999998766544433222233346899999 67788999999998743 4
Q ss_pred eEEEEECCcchHHhHHH---HhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCc
Q 015454 131 QAHACVGGKSVGEDIRK---LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDL 207 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~---~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~ 207 (406)
.+..++|.......... .....+|+|+|++.+..... .+....+++||+||+|.+.+.. ......+..+.. .
T Consensus 246 ~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~--Sklskalr~L~a-~ 320 (1033)
T PLN03142 246 RAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNEN--SLLSKTMRLFST-N 320 (1033)
T ss_pred ceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHH--HHHHHHHHHhhc-C
Confidence 45555665443222211 12457899999999875432 2333458899999999987654 233444445543 4
Q ss_pred eEEEEEecCChH----HHHHHHhcCCC--------------------------------CeEEEecCCc--cccCCceEE
Q 015454 208 QVVLISATLPHE----ILEMTTKFMTD--------------------------------PVKILVKRDE--LTLEGIKQF 249 (406)
Q Consensus 208 ~~i~lSAT~~~~----~~~~~~~~~~~--------------------------------~~~~~~~~~~--~~~~~~~~~ 249 (406)
..+++||||-.. +..++..+.+. |..+.....+ ...+.....
T Consensus 321 ~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~ 400 (1033)
T PLN03142 321 YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKET 400 (1033)
T ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeE
Confidence 468999997321 11111000000 0000000000 000000000
Q ss_pred EEEec--------------------------------------------------------------ccccHHHHHHHHH
Q 015454 250 FVAVE--------------------------------------------------------------REEWKFDTLCDLY 267 (406)
Q Consensus 250 ~~~~~--------------------------------------------------------------~~~~~~~~l~~~~ 267 (406)
...+. ....++..+..++
T Consensus 401 iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL 480 (1033)
T PLN03142 401 ILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLL 480 (1033)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHH
Confidence 00000 0112344444444
Q ss_pred hhc--CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCC---CcEEEEcCcccCCCCCCCCC
Q 015454 268 DTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT---TRVLITTDVWARGLDVQQVS 342 (406)
Q Consensus 268 ~~~--~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vli~t~~~~~G~d~~~~~ 342 (406)
... .+.|+|||++.....+.+.+.|...++.+..++|.++..+|..+++.|+... ..+|++|.+.+.|+|+..++
T Consensus 481 ~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad 560 (1033)
T PLN03142 481 PKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATAD 560 (1033)
T ss_pred HHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCC
Confidence 433 2359999999999999999999999999999999999999999999997543 35788999999999999999
Q ss_pred EEEEecCCCChhhhHhhhhhccCCCCceeEEEE
Q 015454 343 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 375 (406)
Q Consensus 343 ~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~ 375 (406)
+||+++++|++....|++||++|.|+...+.+|
T Consensus 561 ~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~Vy 593 (1033)
T PLN03142 561 IVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 593 (1033)
T ss_pred EEEEeCCCCChHHHHHHHHHhhhcCCCceEEEE
Confidence 999999999999999999999999998766544
No 96
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=7.2e-27 Score=223.74 Aligned_cols=316 Identities=19% Similarity=0.239 Sum_probs=232.7
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHH-hhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcc
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC-QTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~-~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (406)
.|. .|++.|.-..-.+..| -+..+.||+|||+++.+|+. +.+ .+ ..+-+++|+..|+.|.++++..+....+
T Consensus 78 lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL-~G---~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNAL-TG---KGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred hCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHH-cC---CCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 355 6788887666555444 58999999999999999996 444 32 2467999999999999999999999999
Q ss_pred eeEEEEECCcchHHhHHHHhcCCCEEEechHHH-HHHHHccCC------CcCCcceeecchhhHHhccC-----------
Q 015454 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKTL------RTRAIKLLVLDESDEMLSRG----------- 191 (406)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~~~------~~~~~~~vV~DE~h~~~~~~----------- 191 (406)
+++..+.++.+..++.... .++|+++|+..| .+++.++.. ....+.++|+||++.++-..
T Consensus 151 lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~ 228 (830)
T PRK12904 151 LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA 228 (830)
T ss_pred CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCC
Confidence 9999999988877665554 489999999999 778876542 35778999999999864110
Q ss_pred -----cHHHHHHHHHhCCC-------------------------------------------------------------
Q 015454 192 -----FKDQIYDVYRYLPP------------------------------------------------------------- 205 (406)
Q Consensus 192 -----~~~~~~~~~~~~~~------------------------------------------------------------- 205 (406)
....+..+...+..
T Consensus 229 ~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYi 308 (830)
T PRK12904 229 EDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYI 308 (830)
T ss_pred CcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 11111222222210
Q ss_pred --------------------------------------------------------CceEEEEEecCChHHHHHHHhcCC
Q 015454 206 --------------------------------------------------------DLQVVLISATLPHEILEMTTKFMT 229 (406)
Q Consensus 206 --------------------------------------------------------~~~~i~lSAT~~~~~~~~~~~~~~ 229 (406)
-.++.+||+|...+..++..-+..
T Consensus 309 V~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 388 (830)
T PRK12904 309 VKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNL 388 (830)
T ss_pred EECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCC
Confidence 036778888876554444433332
Q ss_pred CCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhh--cCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCC
Q 015454 230 DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMP 307 (406)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 307 (406)
..+.+. ...+......-.........+...+...+.. ....++||||+|++.++.+++.|...|+++..+|+.
T Consensus 389 ~vv~IP---tnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak-- 463 (830)
T PRK12904 389 DVVVIP---TNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK-- 463 (830)
T ss_pred CEEEcC---CCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--
Confidence 222221 1111111111112223344477777777755 444689999999999999999999999999999996
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCC--------------------------------------CEEEEecC
Q 015454 308 QKERDAIMGEFRSGTTRVLITTDVWARGLDVQQV--------------------------------------SLVINYDL 349 (406)
Q Consensus 308 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~--------------------------------------~~vi~~~~ 349 (406)
+.+|+..+..|..+...|+|||+++++|+|++=- =+||....
T Consensus 464 q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTer 543 (830)
T PRK12904 464 NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTER 543 (830)
T ss_pred hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEeccc
Confidence 7789999999999999999999999999998632 27888888
Q ss_pred CCChhhhHhhhhhccCCCCceeEEEEeccCc
Q 015454 350 PNNRELYIHRIGRSGRFGRKGVAINFVKNDD 380 (406)
Q Consensus 350 ~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 380 (406)
+.|..--.|..||+||.|.+|.+..|++-+|
T Consensus 544 hesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 544 HESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred CchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 9999999999999999999999998888654
No 97
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=6.8e-27 Score=224.16 Aligned_cols=314 Identities=18% Similarity=0.214 Sum_probs=219.9
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEE
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (406)
.+++.|.-.--.+ .+.-+..++||+|||+++.+|++.....+ ..+.|++|++.|+.|.++++..+....++.+..
T Consensus 82 ~~ydvQliGg~~L--h~G~Iaem~TGeGKTL~a~Lpa~~~al~G---~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~ 156 (896)
T PRK13104 82 RHFDVQLIGGMVL--HEGNIAEMRTGEGKTLVATLPAYLNAISG---RGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGV 156 (896)
T ss_pred CcchHHHhhhhhh--ccCccccccCCCCchHHHHHHHHHHHhcC---CCEEEEcCCHHHHHHHHHHHHHHhcccCceEEE
Confidence 4555555443333 34468999999999999999999665543 358999999999999999999999999999999
Q ss_pred EECCcchHHhHHHHhcCCCEEEechHHH-HHHHHccC-CCc-----CCcceeecchhhHHhccC----------------
Q 015454 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT-LRT-----RAIKLLVLDESDEMLSRG---------------- 191 (406)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~~-~~~-----~~~~~vV~DE~h~~~~~~---------------- 191 (406)
+.++.+...+.... .++|+++||..| .+++.++. +.. ..+.++|+||+|.++-..
T Consensus 157 i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~ 234 (896)
T PRK13104 157 IYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSE 234 (896)
T ss_pred EeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchH
Confidence 99988776654444 589999999999 88887762 333 578999999999854110
Q ss_pred cHHHHHHHHHhCCC--------------C---------------------------------------------------
Q 015454 192 FKDQIYDVYRYLPP--------------D--------------------------------------------------- 206 (406)
Q Consensus 192 ~~~~~~~~~~~~~~--------------~--------------------------------------------------- 206 (406)
....+..+...+.. .
T Consensus 235 ~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~l 314 (896)
T PRK13104 235 LYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAM 314 (896)
T ss_pred HHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHH
Confidence 00111111111100 0
Q ss_pred -----------------------------------------------------------------ceEEEEEecCChHHH
Q 015454 207 -----------------------------------------------------------------LQVVLISATLPHEIL 221 (406)
Q Consensus 207 -----------------------------------------------------------------~~~i~lSAT~~~~~~ 221 (406)
.++.+||+|...+..
T Consensus 315 f~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~ 394 (896)
T PRK13104 315 FHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAY 394 (896)
T ss_pred hcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHH
Confidence 244555555544333
Q ss_pred HHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHH-hhc-CCcceEEEecchhhHHHHHHHHhcCCceE
Q 015454 222 EMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY-DTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTV 299 (406)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~ 299 (406)
++..-+....+.+. ...+......-.....+...|...+..-+ +.+ .+.++||||+|++.++.+++.|...|+++
T Consensus 395 Ef~~iY~l~Vv~IP---tnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h 471 (896)
T PRK13104 395 EFQQIYNLEVVVIP---TNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKH 471 (896)
T ss_pred HHHHHhCCCEEECC---CCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCe
Confidence 33322222111111 11111111111112222333555554444 222 33589999999999999999999999999
Q ss_pred EEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCC--------------------------------------C
Q 015454 300 SSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ--------------------------------------V 341 (406)
Q Consensus 300 ~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~--------------------------------------~ 341 (406)
..+|+.+...++..+.+.|+.|. |+|||+++++|+|+.= -
T Consensus 472 ~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 549 (896)
T PRK13104 472 QVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGG 549 (896)
T ss_pred EeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCC
Confidence 99999999999999999999995 9999999999999851 1
Q ss_pred CEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCc
Q 015454 342 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDD 380 (406)
Q Consensus 342 ~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 380 (406)
-+||-...+.|..--.|..||+||.|.+|.+..|++-+|
T Consensus 550 L~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 550 LRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred CEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 267777788888889999999999999999998888654
No 98
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=9.4e-27 Score=190.09 Aligned_cols=163 Identities=27% Similarity=0.483 Sum_probs=139.6
Q ss_pred hHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEE
Q 015454 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACV 136 (406)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 136 (406)
||+|.++++.+..++++++.+|||+|||+++.+++++.+.+. +..++++++|+++|+.|..+.+..+....+..+..++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999988776 5568999999999999999999999888788888888
Q ss_pred CCcchH-HhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCC--CceEEEEE
Q 015454 137 GGKSVG-EDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP--DLQVVLIS 213 (406)
Q Consensus 137 ~~~~~~-~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~lS 213 (406)
++.... .....+..+++|+|+||++|...+......+.++++||+||+|.+....+...+..+...+.. +.+++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 888755 333444567999999999999999886556777999999999999988777788888777633 58899999
Q ss_pred ecCChHH
Q 015454 214 ATLPHEI 220 (406)
Q Consensus 214 AT~~~~~ 220 (406)
||+++..
T Consensus 160 AT~~~~~ 166 (169)
T PF00270_consen 160 ATLPSNV 166 (169)
T ss_dssp SSSTHHH
T ss_pred eCCChhH
Confidence 9998543
No 99
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=2.6e-26 Score=219.05 Aligned_cols=318 Identities=17% Similarity=0.197 Sum_probs=225.1
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|. .|++.|.-..-.+..| -+..+.||+|||+++.+++......+ ..+-+++|+.-|+.+-++++..+....++
T Consensus 77 ~g~-~~~dvQlig~l~l~~G--~iaEm~TGEGKTLvA~l~a~l~al~G---~~v~vvT~neyLA~Rd~e~~~~~~~~LGl 150 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEG--NIAEMKTGEGKTLTATLPVYLNALTG---KGVHVVTVNEYLSSRDATEMGELYRWLGL 150 (796)
T ss_pred hCC-CCchhHHHHHHHHhcC--CcccccCCCCCcHHHHHHHHHHHHcC---CCeEEEeccHHHHHhhHHHHHHHHHhcCC
Confidence 355 6788887666555554 49999999999999998887766554 45899999999999999999999999999
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHHH-HHHHccC------CCcCCcceeecchhhHHhccC------------
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRKT------LRTRAIKLLVLDESDEMLSRG------------ 191 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~-~~l~~~~------~~~~~~~~vV~DE~h~~~~~~------------ 191 (406)
++..+.++.+..++... ..++|+.+|...|. ++++++. ...+.+.+.|+||++.++-..
T Consensus 151 ~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~ 228 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAE 228 (796)
T ss_pred eEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCC
Confidence 99998887666555443 35799999987764 3444321 123567899999999853110
Q ss_pred ----cHHHHHHHHHhCCC--------------------------------------------------------------
Q 015454 192 ----FKDQIYDVYRYLPP-------------------------------------------------------------- 205 (406)
Q Consensus 192 ----~~~~~~~~~~~~~~-------------------------------------------------------------- 205 (406)
....+..+...+..
T Consensus 229 ~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~ 308 (796)
T PRK12906 229 KATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRAN 308 (796)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHH
Confidence 00011111110000
Q ss_pred ------------------------------------------------------------------CceEEEEEecCChH
Q 015454 206 ------------------------------------------------------------------DLQVVLISATLPHE 219 (406)
Q Consensus 206 ------------------------------------------------------------------~~~~i~lSAT~~~~ 219 (406)
-.++.+||+|...+
T Consensus 309 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e 388 (796)
T PRK12906 309 YIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTE 388 (796)
T ss_pred HHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHH
Confidence 03567777777654
Q ss_pred HHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhc--CCcceEEEecchhhHHHHHHHHhcCCc
Q 015454 220 ILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNF 297 (406)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~~~ 297 (406)
..++..-+....+.+. ...+......-.....+...+...+...+... ...++||||+|++.++.+++.|.+.++
T Consensus 389 ~~Ef~~iY~l~vv~IP---tnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi 465 (796)
T PRK12906 389 EEEFREIYNMEVITIP---TNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGI 465 (796)
T ss_pred HHHHHHHhCCCEEEcC---CCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 4444333322222211 11111111111112223344777777766443 456999999999999999999999999
Q ss_pred eEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCC---CCC-----EEEEecCCCChhhhHhhhhhccCCCCc
Q 015454 298 TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ---QVS-----LVINYDLPNNRELYIHRIGRSGRFGRK 369 (406)
Q Consensus 298 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~~~~ 369 (406)
++..+|+++...++..+...++.|. |+|||+++++|.|++ ++. +||.+..|.|...+.|+.||+||.|.+
T Consensus 466 ~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~ 543 (796)
T PRK12906 466 PHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDP 543 (796)
T ss_pred CeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCC
Confidence 9999999988777777777666666 999999999999995 788 999999999999999999999999999
Q ss_pred eeEEEEeccCcH
Q 015454 370 GVAINFVKNDDI 381 (406)
Q Consensus 370 ~~~~~~~~~~~~ 381 (406)
|.+..|++-+|.
T Consensus 544 G~s~~~~sleD~ 555 (796)
T PRK12906 544 GSSRFYLSLEDD 555 (796)
T ss_pred cceEEEEeccch
Confidence 999999887643
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=4.3e-27 Score=221.46 Aligned_cols=328 Identities=18% Similarity=0.245 Sum_probs=232.0
Q ss_pred HHHHHHCCCCCChHHHHHhH--HhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHH
Q 015454 45 LRGIYQYGFEKPSAIQQRAV--MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (406)
Q Consensus 45 ~~~l~~~~~~~l~~~Q~~~~--~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 122 (406)
.-.....|...++.||.+++ +.++.+++.+..+||+.|||+++-+.++...... ...++++.|..+.+.+-...+.
T Consensus 213 ~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--rr~~llilp~vsiv~Ek~~~l~ 290 (1008)
T KOG0950|consen 213 HLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--RRNVLLILPYVSIVQEKISALS 290 (1008)
T ss_pred HHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--hhceeEecceeehhHHHHhhhh
Confidence 33345568888999999886 4678899999999999999999998888776543 3468999999999999999999
Q ss_pred HhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc--cCCCcCCcceeecchhhHHhccCcHHHHHHHH
Q 015454 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 200 (406)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~--~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~ 200 (406)
.+....++.+....|........ ....+.|+|.++-..++.. ..-....+++||+||.|.+.+.+.+..++.++
T Consensus 291 ~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l 366 (1008)
T KOG0950|consen 291 PFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLL 366 (1008)
T ss_pred hhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHH
Confidence 99888889888777554443322 2257999999877655443 22334558999999999998887666555443
Q ss_pred -----HhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCC----ccccCCceEEEEEecccccHHHHHHHHH----
Q 015454 201 -----RYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD----ELTLEGIKQFFVAVEREEWKFDTLCDLY---- 267 (406)
Q Consensus 201 -----~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 267 (406)
.......|+|+||||+++ ...+..++.......-.+. +....+...+ . . . +...+..+-
T Consensus 367 ~k~~y~~~~~~~~iIGMSATi~N--~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~-~-~---~-r~~~lr~ia~l~~ 438 (1008)
T KOG0950|consen 367 AKILYENLETSVQIIGMSATIPN--NSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIY-E-S---S-RNKVLREIANLYS 438 (1008)
T ss_pred HHHHHhccccceeEeeeecccCC--hHHHHHHhhhhheecccCcccchhccCCCcccc-c-c---h-hhHHHHHhhhhhh
Confidence 333344679999999976 4444555443222221110 0000110000 0 0 0 111111111
Q ss_pred ---------------hhc-CC-cceEEEecchhhHHHHHHHHhcC-----------------------------------
Q 015454 268 ---------------DTL-TI-TQAVIFCNTKRKVDWLTEKMRGY----------------------------------- 295 (406)
Q Consensus 268 ---------------~~~-~~-~k~lif~~~~~~~~~l~~~l~~~----------------------------------- 295 (406)
.+. +. .++||||++++.++.++..+...
T Consensus 439 ~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~ 518 (1008)
T KOG0950|consen 439 SNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLA 518 (1008)
T ss_pred hhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHh
Confidence 111 11 35999999999988776554311
Q ss_pred ---CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEe----cCCCChhhhHhhhhhccCCCC
Q 015454 296 ---NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINY----DLPNNRELYIHRIGRSGRFGR 368 (406)
Q Consensus 296 ---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~----~~~~s~~~~~Q~~GR~~R~~~ 368 (406)
.+.+..+|++++.++|+.+...|++|.+.|+.+|+.+..|+|+|.-++++-. ....+...|.||+||+||.|-
T Consensus 519 ~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 519 KTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred eeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 1347889999999999999999999999999999999999999988877743 234577899999999999986
Q ss_pred c--eeEEEEeccCcHHHHHH
Q 015454 369 K--GVAINFVKNDDIKILRD 386 (406)
Q Consensus 369 ~--~~~~~~~~~~~~~~~~~ 386 (406)
+ |.+++++...+.+.+..
T Consensus 599 dT~GdsiLI~k~~e~~~~~~ 618 (1008)
T KOG0950|consen 599 DTLGDSILIIKSSEKKRVRE 618 (1008)
T ss_pred ccCcceEEEeeccchhHHHH
Confidence 6 88999999888766553
No 101
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.7e-25 Score=214.35 Aligned_cols=149 Identities=18% Similarity=0.298 Sum_probs=127.9
Q ss_pred cccCCCCHHHHHHHH-----HCCCCCC---hHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEE
Q 015454 35 FDAMGIKDDLLRGIY-----QYGFEKP---SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (406)
Q Consensus 35 ~~~~~l~~~i~~~l~-----~~~~~~l---~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~li 106 (406)
.+.+++...+.+.+. ..|+..| +|+|.++++.+..+++++..++||+|||++|++|++..+..+. .++|
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~I 140 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVHL 140 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeEE
Confidence 456778888877776 4578777 9999999999999999999999999999999999997765432 3889
Q ss_pred EcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHH-HHHHHccCCCcC-------Ccce
Q 015454 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKTLRTR-------AIKL 178 (406)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~~~~~~-------~~~~ 178 (406)
++|+++|+.|..+.+..+....++++..+.||.+...+.... .++|+|+||.+| .+++..+.+..+ .+.+
T Consensus 141 VTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~ 218 (970)
T PRK12899 141 VTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYF 218 (970)
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccE
Confidence 999999999999999999988999999999999988776554 589999999999 899888755544 5689
Q ss_pred eecchhhHHh
Q 015454 179 LVLDESDEML 188 (406)
Q Consensus 179 vV~DE~h~~~ 188 (406)
+|+|||+.++
T Consensus 219 ~IIDEADsmL 228 (970)
T PRK12899 219 AIIDEVDSIL 228 (970)
T ss_pred EEEechhhhh
Confidence 9999999864
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.95 E-value=2.6e-26 Score=225.05 Aligned_cols=320 Identities=18% Similarity=0.208 Sum_probs=208.1
Q ss_pred CChHHHHHhHHhhhcC---C-cEEEECCCCCChhhHhHHHHHhhhcc-CCCceeEEEEcCcHHHHHHHHHHHHHhccCcc
Q 015454 55 KPSAIQQRAVMPIIKG---R-DVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIGDFIN 129 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~---~-~~il~~~tGsGKT~~~~~~i~~~~~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (406)
..+++|..++..+... . .+++.||||+|||.+.+.+....+.. .....+++++.|++++.+++++.+........
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 3489999999987763 4 78999999999999999888877766 34567899999999999999999987654443
Q ss_pred eeEEEEECCcchHHhHHH--------------HhcCCCEEEechHHHHHHHHccCCCc-----CCcceeecchhhHHhcc
Q 015454 130 IQAHACVGGKSVGEDIRK--------------LEHGVHVVSGTPGRVCDMIKRKTLRT-----RAIKLLVLDESDEMLSR 190 (406)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~--------------~~~~~~iii~T~~~l~~~l~~~~~~~-----~~~~~vV~DE~h~~~~~ 190 (406)
......++.......... ...-..+.++|+......... ...+ -..+++|+||+|.+...
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVK-GFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhcc-ccchHHHHHHHhhchhhccHHhhccc
Confidence 332212222111110000 001123344444444331111 1111 12468999999998777
Q ss_pred CcHHHHHHHHHhC-CCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCcc---ccCCceE-EEEEecccccHHHHHHH
Q 015454 191 GFKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDEL---TLEGIKQ-FFVAVEREEWKFDTLCD 265 (406)
Q Consensus 191 ~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~l~~ 265 (406)
.....+..+...+ ..+..+++||||+|+.....+.........+....... ....... ......... .......
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~ 432 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGP-QEELIEL 432 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhh-hHhhhhc
Confidence 3222333333222 23667999999999999998888776554443321100 0000000 000010000 0011111
Q ss_pred HHh-hcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHH----hcCCCcEEEEcCcccCCCCCCC
Q 015454 266 LYD-TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEF----RSGTTRVLITTDVWARGLDVQQ 340 (406)
Q Consensus 266 ~~~-~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f----~~~~~~vli~t~~~~~G~d~~~ 340 (406)
... ....++++|.|||+..|.++++.|+..+..+..+||.+...+|.+.++.+ +.+...|+|+|++.+.|+|+ +
T Consensus 433 ~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-d 511 (733)
T COG1203 433 ISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-D 511 (733)
T ss_pred chhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-c
Confidence 111 22336899999999999999999999887899999999999998887755 45778999999999999999 4
Q ss_pred CCEEEEecCCCChhhhHhhhhhccCCC--CceeEEEEeccC
Q 015454 341 VSLVINYDLPNNRELYIHRIGRSGRFG--RKGVAINFVKND 379 (406)
Q Consensus 341 ~~~vi~~~~~~s~~~~~Q~~GR~~R~~--~~~~~~~~~~~~ 379 (406)
.+++|.- +.++.+.+||+||++|.| ..|..+++....
T Consensus 512 fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 512 FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 6666644 566788999999999999 457777766654
No 103
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.5e-24 Score=209.16 Aligned_cols=309 Identities=17% Similarity=0.277 Sum_probs=218.3
Q ss_pred hHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHH-hccCcceeEEEE
Q 015454 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAHAC 135 (406)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~~ 135 (406)
+....+....+.+++-++|.||||||||...-..++.... ..+.++.+.=|++--+...++++.. ++...+-.++..
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~ 129 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYS 129 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEE
Confidence 4445567777788888999999999999776666666544 3345788899999777887777654 333334333332
Q ss_pred ECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHh-ccCc-HHHHHHHHHhCCCCceEEEEE
Q 015454 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGF-KDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~-~~~~-~~~~~~~~~~~~~~~~~i~lS 213 (406)
....+. ......|-++|.+.|++.+.+..+ ++.+++||+||+|+=+ +.++ -..+..+....++..++|.||
T Consensus 130 iRfe~~------~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimS 202 (845)
T COG1643 130 IRFESK------VSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMS 202 (845)
T ss_pred EEeecc------CCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 211111 123468999999999998887655 7789999999999732 2221 234455566667779999999
Q ss_pred ecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEeccccc-HHHHHHHHHh---hcCCcceEEEecchhhHHHHH
Q 015454 214 ATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEW-KFDTLCDLYD---TLTITQAVIFCNTKRKVDWLT 289 (406)
Q Consensus 214 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~---~~~~~k~lif~~~~~~~~~l~ 289 (406)
||++.+ .+..++.+.-.+.+....++ +..+|......+. ..+.+...+. ....+-+|||.+-..+.+..+
T Consensus 203 ATld~~---rfs~~f~~apvi~i~GR~fP---Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~ 276 (845)
T COG1643 203 ATLDAE---RFSAYFGNAPVIEIEGRTYP---VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTA 276 (845)
T ss_pred cccCHH---HHHHHcCCCCEEEecCCccc---eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHH
Confidence 999863 34445554333333333222 2333323222322 3333333332 334578999999999999999
Q ss_pred HHHhc----CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecC----------------
Q 015454 290 EKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL---------------- 349 (406)
Q Consensus 290 ~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~---------------- 349 (406)
+.|.+ ....+..+||.++.++..++++--..|..+|+++|++++.++.+|+++.||.-+.
T Consensus 277 ~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~ 356 (845)
T COG1643 277 EWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLE 356 (845)
T ss_pred HHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeee
Confidence 99987 3478999999999999999988877777789999999999999999999997554
Q ss_pred --CCChhhhHhhhhhccCCCCceeEEEEeccCcH
Q 015454 350 --PNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 381 (406)
Q Consensus 350 --~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 381 (406)
+.|-.+..||.||+||.+ +|.|+-++.+.+.
T Consensus 357 ~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~ 389 (845)
T COG1643 357 TEPISKASADQRAGRAGRTG-PGICYRLYSEEDF 389 (845)
T ss_pred EEEechhhhhhhccccccCC-CceEEEecCHHHH
Confidence 346778899999999994 9999999987543
No 104
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.93 E-value=4.3e-24 Score=207.39 Aligned_cols=299 Identities=14% Similarity=0.128 Sum_probs=180.7
Q ss_pred CChHHHHHhHHhhhc----------CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015454 55 KPSAIQQRAVMPIIK----------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~----------~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (406)
-++++|.+|+..+.+ .+..++.+|||||||++++..+...+ ...+..++|+++|+.+|..|+.+.+..+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 379999999887643 24699999999999988877665544 3344678999999999999999999987
Q ss_pred ccCcceeEEEEECCcchHHhHHHHh-cCCCEEEechHHHHHHHHcc--CCCcCCc-ceeecchhhHHhccCcHHHHHHHH
Q 015454 125 GDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRK--TLRTRAI-KLLVLDESDEMLSRGFKDQIYDVY 200 (406)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iii~T~~~l~~~l~~~--~~~~~~~-~~vV~DE~h~~~~~~~~~~~~~~~ 200 (406)
+.... ....+.......+. ....|+|+|.++|...+... .+..... .+||+||||+.....+.. .+.
T Consensus 317 ~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~---~l~ 387 (667)
T TIGR00348 317 QKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAK---NLK 387 (667)
T ss_pred CCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHH---HHH
Confidence 63210 01111111112222 33689999999998644331 1111112 389999999864333222 233
Q ss_pred HhCCCCceEEEEEecCChHH----HHHHHhcCCCCeEEEecCCccccCCc-eE-EEEEec------cc------------
Q 015454 201 RYLPPDLQVVLISATLPHEI----LEMTTKFMTDPVKILVKRDELTLEGI-KQ-FFVAVE------RE------------ 256 (406)
Q Consensus 201 ~~~~~~~~~i~lSAT~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~------~~------------ 256 (406)
+.++ +..++++||||-... ........+.+.... .-.+....+. .. .|.... ..
T Consensus 388 ~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y-~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~ 465 (667)
T TIGR00348 388 KALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRY-FITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFEL 465 (667)
T ss_pred hhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEe-eHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHh
Confidence 4444 456899999985321 111111011221111 1000000110 00 000000 00
Q ss_pred ------cc--------------------HHHH----H-HHHHhh--cCCcceEEEecchhhHHHHHHHHhcC-----Cce
Q 015454 257 ------EW--------------------KFDT----L-CDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGY-----NFT 298 (406)
Q Consensus 257 ------~~--------------------~~~~----l-~~~~~~--~~~~k~lif~~~~~~~~~l~~~l~~~-----~~~ 298 (406)
+. .... + ..+.+. ....|++|+|.++..|..+++.|.+. +..
T Consensus 466 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~ 545 (667)
T TIGR00348 466 LPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEAS 545 (667)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCe
Confidence 00 0000 0 011111 12368999999999999999888654 234
Q ss_pred EEEeecCCCHH---------------------HHHHHHHHHhc-CCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhh
Q 015454 299 VSSMHGDMPQK---------------------ERDAIMGEFRS-GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELY 356 (406)
Q Consensus 299 ~~~~~~~~~~~---------------------~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~ 356 (406)
...+++..+.. ....++++|++ +..++||+++.+.+|+|.|.++++++..+..+. .+
T Consensus 546 ~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h-~L 624 (667)
T TIGR00348 546 AIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH-GL 624 (667)
T ss_pred eEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc-HH
Confidence 45555543322 22468888876 678999999999999999999999999877764 58
Q ss_pred HhhhhhccCC
Q 015454 357 IHRIGRSGRF 366 (406)
Q Consensus 357 ~Q~~GR~~R~ 366 (406)
+|++||+.|.
T Consensus 625 lQai~R~nR~ 634 (667)
T TIGR00348 625 LQAIARTNRI 634 (667)
T ss_pred HHHHHHhccc
Confidence 9999999994
No 105
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.93 E-value=1.4e-24 Score=202.56 Aligned_cols=294 Identities=19% Similarity=0.241 Sum_probs=193.1
Q ss_pred CChHHHHHhHHhhhc----C-CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcc
Q 015454 55 KPSAIQQRAVMPIIK----G-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~----~-~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (406)
.+|++|..|+..+.+ | +.+++++.||+|||.+++. ++..+.......++|+++.+++|+.|.+..+..+.....
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 689999999887654 4 4599999999999988765 445555555667899999999999999999888764432
Q ss_pred eeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHcc-----CCCcCCcceeecchhhHHhccCcHHHHHHHHHhCC
Q 015454 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-----TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (406)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~-----~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~ 204 (406)
. .....+... ...++|.++|++++....... .+....|++||+||||+-.-..+. .++..+.
T Consensus 244 ~--~n~i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~----~I~dYFd 310 (875)
T COG4096 244 K--MNKIEDKKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWS----SILDYFD 310 (875)
T ss_pred c--eeeeecccC-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhH----HHHHHHH
Confidence 2 222211111 113799999999999877654 344566999999999985544333 3333332
Q ss_pred CCceEEEEEecCChHHHHHHHhcC-CCCeEEE----------------------ecCCccccCCc--------------e
Q 015454 205 PDLQVVLISATLPHEILEMTTKFM-TDPVKIL----------------------VKRDELTLEGI--------------K 247 (406)
Q Consensus 205 ~~~~~i~lSAT~~~~~~~~~~~~~-~~~~~~~----------------------~~~~~~~~~~~--------------~ 247 (406)
. ..+++||||.......--.++ +.|.... ...+...+... .
T Consensus 311 A--~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd 388 (875)
T COG4096 311 A--ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDD 388 (875)
T ss_pred H--HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCccc
Confidence 1 145669998664333222333 2222211 00111111000 0
Q ss_pred EEE---------EEecccccHHHHHHHHHhh--cC--CcceEEEecchhhHHHHHHHHhcC-----CceEEEeecCCCHH
Q 015454 248 QFF---------VAVEREEWKFDTLCDLYDT--LT--ITQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQK 309 (406)
Q Consensus 248 ~~~---------~~~~~~~~~~~~l~~~~~~--~~--~~k~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~ 309 (406)
+.+ ......+.....+...+.. .. .+|+||||.+..+|+.+...|... +--+..+.++..
T Consensus 389 ~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~-- 466 (875)
T COG4096 389 QNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE-- 466 (875)
T ss_pred ccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--
Confidence 000 0011112234455555555 22 359999999999999999999753 234566666633
Q ss_pred HHHHHHHHHhc--CCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCC
Q 015454 310 ERDAIMGEFRS--GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRF 366 (406)
Q Consensus 310 ~r~~~~~~f~~--~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 366 (406)
+-...+..|.. .-.+|.|+.+.+..|+|+|.+..++++....|...|.||+||+-|.
T Consensus 467 ~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 467 QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 33455556644 3457888999999999999999999999999999999999999996
No 106
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=2.3e-24 Score=206.32 Aligned_cols=315 Identities=17% Similarity=0.214 Sum_probs=218.2
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEE
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (406)
.|++.|.-.--.+ .+.-+..++||.|||+++.+|++.....+. .+.|++|+..|+.+-.+++..+....++++..
T Consensus 82 ~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~g~---~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~ 156 (908)
T PRK13107 82 RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALTGK---GVHVITVNDYLARRDAENNRPLFEFLGLTVGI 156 (908)
T ss_pred CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 4555555333333 345689999999999999999986665443 39999999999999999999999999999999
Q ss_pred EECCcchHHhHHHHhcCCCEEEechHHH-HHHHHcc-CCCc-----CCcceeecchhhHHhccC----------------
Q 015454 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK-TLRT-----RAIKLLVLDESDEMLSRG---------------- 191 (406)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~-~~~~-----~~~~~vV~DE~h~~~~~~---------------- 191 (406)
+.++.+..+. .....++|+++|+..| .+++..+ .... ..+.++|+||++.++-..
T Consensus 157 i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~ 234 (908)
T PRK13107 157 NVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSE 234 (908)
T ss_pred ecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCccchH
Confidence 9888776443 2234689999999999 7777765 2332 678899999999864221
Q ss_pred cHH----HHHHHHHhCC---------------CC----------------------------------------------
Q 015454 192 FKD----QIYDVYRYLP---------------PD---------------------------------------------- 206 (406)
Q Consensus 192 ~~~----~~~~~~~~~~---------------~~---------------------------------------------- 206 (406)
... .+..+.+... ..
T Consensus 235 ~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL 314 (908)
T PRK13107 235 LYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAAL 314 (908)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHH
Confidence 000 0111110000 00
Q ss_pred ----------------------------------------------------------------------ceEEEEEecC
Q 015454 207 ----------------------------------------------------------------------LQVVLISATL 216 (406)
Q Consensus 207 ----------------------------------------------------------------------~~~i~lSAT~ 216 (406)
.++.+||+|.
T Consensus 315 ~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa 394 (908)
T PRK13107 315 RAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTA 394 (908)
T ss_pred HHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCC
Confidence 2455666665
Q ss_pred ChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHh-hc-CCcceEEEecchhhHHHHHHHHhc
Q 015454 217 PHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-TL-TITQAVIFCNTKRKVDWLTEKMRG 294 (406)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~k~lif~~~~~~~~~l~~~l~~ 294 (406)
..+..++..-+....+.+............. ....+...|...+..-+. .+ .+.++||||+|++.++.++..|..
T Consensus 395 ~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d---~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~ 471 (908)
T PRK13107 395 DTEAFEFQHIYGLDTVVVPTNRPMVRKDMAD---LVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVK 471 (908)
T ss_pred hHHHHHHHHHhCCCEEECCCCCCccceeCCC---cEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHH
Confidence 5443333333222211111111111111111 111222334444443333 22 235899999999999999999999
Q ss_pred CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCC-----------------------------------
Q 015454 295 YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ----------------------------------- 339 (406)
Q Consensus 295 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~----------------------------------- 339 (406)
.++++..+|+.....++..+.+.|+.|. |+|||+++++|.|+.
T Consensus 472 ~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 549 (908)
T PRK13107 472 EKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVV 549 (908)
T ss_pred CCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999988 999999999999985
Q ss_pred --CCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcH
Q 015454 340 --QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 381 (406)
Q Consensus 340 --~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 381 (406)
+--+||-...+.|..--.|..||+||.|.+|.+..|++-+|.
T Consensus 550 ~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 550 AAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 122788888888988899999999999999999998886554
No 107
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=2.3e-23 Score=192.48 Aligned_cols=329 Identities=19% Similarity=0.178 Sum_probs=218.0
Q ss_pred CChHHHHHhHHhhhc----CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 55 KPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~----~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|.+||++.++++.+ +...|+-..+|-|||...+..+........--..+||||| ..+..||..++.++... .
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP-~Tii~qW~~E~~~w~p~--~ 281 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCP-ATIIHQWMKEFQTWWPP--F 281 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEcc-HHHHHHHHHHHHHhCcc--e
Confidence 468999999988765 5668999999999995544433332222233356999999 78899999999998755 4
Q ss_pred eEEEEECCcchH--------HhH-----HHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHH
Q 015454 131 QAHACVGGKSVG--------EDI-----RKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (406)
Q Consensus 131 ~~~~~~~~~~~~--------~~~-----~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~ 197 (406)
.+..+++..... ..+ +.......|+|+|++.+.-. ...+....++++|+||.|.+-+... .+.
T Consensus 282 rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpns--~is 357 (923)
T KOG0387|consen 282 RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPNS--KIS 357 (923)
T ss_pred EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCcc--HHH
Confidence 555555543310 001 11123467999999887632 2334456689999999999987763 333
Q ss_pred HHHHhCCCCceEEEEEecCChHHHHHHH----------------------------------------------------
Q 015454 198 DVYRYLPPDLQVVLISATLPHEILEMTT---------------------------------------------------- 225 (406)
Q Consensus 198 ~~~~~~~~~~~~i~lSAT~~~~~~~~~~---------------------------------------------------- 225 (406)
.....++ ..+.+++|+||-......+.
T Consensus 358 lackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI 436 (923)
T KOG0387|consen 358 LACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLI 436 (923)
T ss_pred HHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 3344443 34467788885211000000
Q ss_pred -------------h-cC-CCCeEEE-ecC-----------------------CccccCCc--------------------
Q 015454 226 -------------K-FM-TDPVKIL-VKR-----------------------DELTLEGI-------------------- 246 (406)
Q Consensus 226 -------------~-~~-~~~~~~~-~~~-----------------------~~~~~~~~-------------------- 246 (406)
. .+ .....+. +.- ......++
T Consensus 437 ~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~ 516 (923)
T KOG0387|consen 437 SPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDE 516 (923)
T ss_pred HHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccccc
Confidence 0 00 0000000 000 00000000
Q ss_pred e--EEEEEecccccHHHHHHHHHhhcCC--cceEEEecchhhHHHHHHHHh-cCCceEEEeecCCCHHHHHHHHHHHhcC
Q 015454 247 K--QFFVAVEREEWKFDTLCDLYDTLTI--TQAVIFCNTKRKVDWLTEKMR-GYNFTVSSMHGDMPQKERDAIMGEFRSG 321 (406)
Q Consensus 247 ~--~~~~~~~~~~~~~~~l~~~~~~~~~--~k~lif~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 321 (406)
. .-+........++..+..+++.+.. .++|+|.+++.....+...|. ..++.+.-+.|..+...|..++++|+++
T Consensus 517 ~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~ 596 (923)
T KOG0387|consen 517 KQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNED 596 (923)
T ss_pred ccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCC
Confidence 0 0000111223478888888887743 499999999999999999998 5899999999999999999999999977
Q ss_pred CC--cEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEE--eccCcHHHHHHHHHHH
Q 015454 322 TT--RVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF--VKNDDIKILRDIEQYY 391 (406)
Q Consensus 322 ~~--~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~--~~~~~~~~~~~~~~~~ 391 (406)
.. -+|++|.+.+-|+|+..++.||++++.|++++=.|..-|+.|.|++..+++| ++....++...-+|.+
T Consensus 597 ~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~ 670 (923)
T KOG0387|consen 597 ESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIF 670 (923)
T ss_pred CceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHH
Confidence 65 3567889999999999999999999999999999999999999988665544 5555444433333333
No 108
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.93 E-value=9.6e-24 Score=194.15 Aligned_cols=329 Identities=17% Similarity=0.203 Sum_probs=221.2
Q ss_pred CChHHHHHhHHhhhc----CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 55 KPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~----~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.+++||.+-++++.. |-++|+...+|-|||+..+..+..........+..||++|.. -..+|..++++++.. +
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~S-tL~NW~~Ef~rf~P~--l 243 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKS-TLDNWMNEFKRFTPS--L 243 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHh-hHHHHHHHHHHhCCC--c
Confidence 689999999988764 678999999999999665544444433223234589999954 456777888888754 6
Q ss_pred eEEEEECCcchHHhHHH---HhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCc
Q 015454 131 QAHACVGGKSVGEDIRK---LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDL 207 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~---~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~ 207 (406)
.+..++|+......... .....+|+|||++...+- ...+..-+++++|+||+|++.+.. ..+...++.+....
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f~~~n 319 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLSKILREFKTDN 319 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHHHHHHHhcccc
Confidence 67777887654333221 234689999999988753 223334558999999999998765 34445666665444
Q ss_pred eEEEEEecCChHHH-------------------------------------------------H----HHHhcCCCCeEE
Q 015454 208 QVVLISATLPHEIL-------------------------------------------------E----MTTKFMTDPVKI 234 (406)
Q Consensus 208 ~~i~lSAT~~~~~~-------------------------------------------------~----~~~~~~~~~~~~ 234 (406)
.+++|+||-.... . .....+.....+
T Consensus 320 -rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~ 398 (971)
T KOG0385|consen 320 -RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKEL 398 (971)
T ss_pred -eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCccee
Confidence 5888999521100 0 000000000000
Q ss_pred E-ecC-----------------------C---ccccCCc--------eEEE--E------------EecccccHHHHHHH
Q 015454 235 L-VKR-----------------------D---ELTLEGI--------KQFF--V------------AVEREEWKFDTLCD 265 (406)
Q Consensus 235 ~-~~~-----------------------~---~~~~~~~--------~~~~--~------------~~~~~~~~~~~l~~ 265 (406)
. ... . ...+.++ .+-| . ..-....|+..|..
T Consensus 399 ~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDk 478 (971)
T KOG0385|consen 399 IIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDK 478 (971)
T ss_pred eEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHH
Confidence 0 000 0 0000000 0000 0 00111335556666
Q ss_pred HHhhc--CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCC---CcEEEEcCcccCCCCCCC
Q 015454 266 LYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT---TRVLITTDVWARGLDVQQ 340 (406)
Q Consensus 266 ~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vli~t~~~~~G~d~~~ 340 (406)
++... .+.+||||.+.....+.+.+++.-+++.+.-+.|.++.++|...++.|+... .-+|++|.+.+.|+|+..
T Consensus 479 LL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~a 558 (971)
T KOG0385|consen 479 LLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTA 558 (971)
T ss_pred HHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccccc
Confidence 66544 2369999999999999999999889999999999999999999999998655 346788999999999999
Q ss_pred CCEEEEecCCCChhhhHhhhhhccCCCCceeEEEE--eccCc--HHHHHHHHHHH
Q 015454 341 VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF--VKNDD--IKILRDIEQYY 391 (406)
Q Consensus 341 ~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~--~~~~~--~~~~~~~~~~~ 391 (406)
++.||+|+..|++..=+|++.|++|.|+...+++| ++.+. ...+++-.+.+
T Consensus 559 ADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL 613 (971)
T KOG0385|consen 559 ADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKL 613 (971)
T ss_pred ccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999998776665 44443 33344444443
No 109
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.93 E-value=9.6e-24 Score=192.57 Aligned_cols=307 Identities=16% Similarity=0.272 Sum_probs=211.2
Q ss_pred HHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHH-hccCcceeEEEEE
Q 015454 58 AIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAHACV 136 (406)
Q Consensus 58 ~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~ 136 (406)
.+-.+.+..+.+++-+++.|+||||||...--.+..+-.... +++-+.-|+|--+..++++... .+-..+-.++...
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~--g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~I 131 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASS--GKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTI 131 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccC--CcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEE
Confidence 344567777788888999999999999766555554433332 2388888999777777766543 2223332222211
Q ss_pred --CCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhc--cCcHHHHHHHHHhCCCCceEEEE
Q 015454 137 --GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS--RGFKDQIYDVYRYLPPDLQVVLI 212 (406)
Q Consensus 137 --~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~--~~~~~~~~~~~~~~~~~~~~i~l 212 (406)
.+.. .....|.++|.+.|++....+.. ++.+++||+||||+=.- .-.-..+..+++. ++..++|.+
T Consensus 132 RFed~t--------s~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklIim 201 (674)
T KOG0922|consen 132 RFEDST--------SKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLIIM 201 (674)
T ss_pred EecccC--------CCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEEEE
Confidence 1111 12368999999999987665444 67799999999996321 1111233333333 346789999
Q ss_pred EecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHH---hhcCCcceEEEecchhhHHHHH
Q 015454 213 SATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY---DTLTITQAVIFCNTKRKVDWLT 289 (406)
Q Consensus 213 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~k~lif~~~~~~~~~l~ 289 (406)
|||+.. +..++++..-..+.+..... .++.+|...+..+...+.+...+ ...+.+-+|||....++.+..+
T Consensus 202 SATlda---~kfS~yF~~a~i~~i~GR~f---PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~ 275 (674)
T KOG0922|consen 202 SATLDA---EKFSEYFNNAPILTIPGRTF---PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAAC 275 (674)
T ss_pred eeeecH---HHHHHHhcCCceEeecCCCC---ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHH
Confidence 999985 34445555533333333322 23344444444444444444433 3445678999999999999999
Q ss_pred HHHhcC----Cc----eEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecC------------
Q 015454 290 EKMRGY----NF----TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL------------ 349 (406)
Q Consensus 290 ~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~------------ 349 (406)
+.|.+. +. -+..+||.++.++..++++.-..|..+|+++|++++.++.+|++..||.-+.
T Consensus 276 ~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~ 355 (674)
T KOG0922|consen 276 ELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGL 355 (674)
T ss_pred HHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCc
Confidence 888764 11 2567999999999999999888899999999999999999999999997553
Q ss_pred ------CCChhhhHhhhhhccCCCCceeEEEEeccCcHHH
Q 015454 350 ------PNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKI 383 (406)
Q Consensus 350 ------~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~ 383 (406)
|.|..+-.||.||+||.| +|+|+-++.+++.+.
T Consensus 356 ~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 356 DSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDK 394 (674)
T ss_pred cceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhh
Confidence 457788899999999995 999999999876543
No 110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.6e-23 Score=197.39 Aligned_cols=279 Identities=19% Similarity=0.322 Sum_probs=192.0
Q ss_pred CCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcc-e
Q 015454 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN-I 130 (406)
Q Consensus 52 ~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~-~ 130 (406)
|+ .|+..|+-+...+..|+++-+.||||.|||..-++..+.. ..++.++++++||..|+.|.++.+.++....+ .
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~---a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYL---AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHH---HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCc
Confidence 45 8999999999999999999999999999995433322222 23457899999999999999999999886655 3
Q ss_pred eEEE-EECCcchHH---hHHHHh-cCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC-----------cHH
Q 015454 131 QAHA-CVGGKSVGE---DIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----------FKD 194 (406)
Q Consensus 131 ~~~~-~~~~~~~~~---~~~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~-----------~~~ 194 (406)
.+.. .++..+..+ ....+. .+.+|+|+|.+-|.+.+..-. .-+|++|++|++|.++..+ |..
T Consensus 156 ~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~--~~kFdfifVDDVDA~LkaskNvDriL~LlGf~e 233 (1187)
T COG1110 156 DVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS--KLKFDFIFVDDVDAILKASKNVDRLLRLLGFSE 233 (1187)
T ss_pred ceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc--ccCCCEEEEccHHHHHhccccHHHHHHHcCCCH
Confidence 3333 344423222 222333 458999999988877655422 2458999999999876432 111
Q ss_pred -------HHHHHHHhC------------------------CCCceEEEEEecCChHH--HHHHHhcCCCCeEEEecCCcc
Q 015454 195 -------QIYDVYRYL------------------------PPDLQVVLISATLPHEI--LEMTTKFMTDPVKILVKRDEL 241 (406)
Q Consensus 195 -------~~~~~~~~~------------------------~~~~~~i~lSAT~~~~~--~~~~~~~~~~~~~~~~~~~~~ 241 (406)
.+..+...+ .+..+++..|||..+.- ......+++- .+.....
T Consensus 234 E~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF----evG~~~~ 309 (1187)
T COG1110 234 EVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF----EVGSGGE 309 (1187)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC----ccCccch
Confidence 111111111 13367899999985532 1222232221 1112223
Q ss_pred ccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecc---hhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHH
Q 015454 242 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT---KRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEF 318 (406)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 318 (406)
..-++...|... .....+..+++... .-.|||++. ++.++++++.|++.|+++..+|+. ....++.|
T Consensus 310 ~LRNIvD~y~~~----~~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F 379 (1187)
T COG1110 310 GLRNIVDIYVES----ESLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDF 379 (1187)
T ss_pred hhhheeeeeccC----ccHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhh
Confidence 334444444443 34455556666665 368999999 899999999999999999999985 36789999
Q ss_pred hcCCCcEEEEc----CcccCCCCCC-CCCEEEEecCC
Q 015454 319 RSGTTRVLITT----DVWARGLDVQ-QVSLVINYDLP 350 (406)
Q Consensus 319 ~~~~~~vli~t----~~~~~G~d~~-~~~~vi~~~~~ 350 (406)
..|++++||+. ..+-+|+|+| .++.+|+++.|
T Consensus 380 ~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 380 EEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 99999999986 4688999999 48899998877
No 111
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.92 E-value=2.8e-22 Score=200.87 Aligned_cols=343 Identities=15% Similarity=0.155 Sum_probs=210.6
Q ss_pred CHHHHHHHHHCCCCCChHHHHHhHH----hhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHH
Q 015454 41 KDDLLRGIYQYGFEKPSAIQQRAVM----PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (406)
Q Consensus 41 ~~~i~~~l~~~~~~~l~~~Q~~~~~----~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q 116 (406)
.+.+.+.+...|| .+|+.|.+... .+.+++++++.||||+|||++|++|++.... .+.+++|.+||++|..|
T Consensus 232 ~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~Q 307 (850)
T TIGR01407 232 SSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQSQ 307 (850)
T ss_pred cHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHHH
Confidence 3466677777788 58999998665 4556789999999999999999999887655 24579999999999999
Q ss_pred HHH-HHHHhccCcc--eeEEEEECCcchH---------------------------------------------------
Q 015454 117 TEK-VILAIGDFIN--IQAHACVGGKSVG--------------------------------------------------- 142 (406)
Q Consensus 117 ~~~-~~~~~~~~~~--~~~~~~~~~~~~~--------------------------------------------------- 142 (406)
+.. .+..+....+ +.+..+.|+.++-
T Consensus 308 l~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~ 387 (850)
T TIGR01407 308 LLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFA 387 (850)
T ss_pred HHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHH
Confidence 865 4444332222 3444333321110
Q ss_pred --------------------HhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC-------c---
Q 015454 143 --------------------EDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-------F--- 192 (406)
Q Consensus 143 --------------------~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~-------~--- 192 (406)
...+.....++|+|+++..|...+......+...+++|+||||++.+.. +
T Consensus 388 ~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~ 467 (850)
T TIGR01407 388 QVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDYA 467 (850)
T ss_pred HhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCHH
Confidence 0011112336899999998887765443334556899999999964210 0
Q ss_pred --HHH----------------------------------------------------------------HHHHHHh----
Q 015454 193 --KDQ----------------------------------------------------------------IYDVYRY---- 202 (406)
Q Consensus 193 --~~~----------------------------------------------------------------~~~~~~~---- 202 (406)
... +......
T Consensus 468 ~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 547 (850)
T TIGR01407 468 DIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDD 547 (850)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 000 0000000
Q ss_pred -------C-------------------------------------CCCceEEEEEecCChH-HHHHHHhcCCCC--eEEE
Q 015454 203 -------L-------------------------------------PPDLQVVLISATLPHE-ILEMTTKFMTDP--VKIL 235 (406)
Q Consensus 203 -------~-------------------------------------~~~~~~i~lSAT~~~~-~~~~~~~~~~~~--~~~~ 235 (406)
+ +....+|++|||+... -.+.....++-. ....
T Consensus 548 ~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~ 627 (850)
T TIGR01407 548 FKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNT 627 (850)
T ss_pred HHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccce
Confidence 0 0124688999999632 133333333321 1111
Q ss_pred ecCCccc-cCCceEEEEE--ecc-----ccc----HHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhc----CCceE
Q 015454 236 VKRDELT-LEGIKQFFVA--VER-----EEW----KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRG----YNFTV 299 (406)
Q Consensus 236 ~~~~~~~-~~~~~~~~~~--~~~-----~~~----~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~----~~~~~ 299 (406)
..+.... ..+. ..+.. .+. .+. ....+..++... .+++|||++|.+..+.++..|.. .++.
T Consensus 628 ~~~spf~~~~~~-~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~-~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~- 704 (850)
T TIGR01407 628 IEPTPLNYAENQ-RVLIPTDAPAIQNKSLEEYAQEIASYIIEITAIT-SPKILVLFTSYEMLHMVYDMLNELPEFEGYE- 704 (850)
T ss_pred ecCCCCCHHHcC-EEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHhhhccccCce-
Confidence 1111122 1111 22221 110 111 222333444433 37899999999999999999875 2333
Q ss_pred EEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCC--EEEEecCCCCh------------------------
Q 015454 300 SSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVS--LVINYDLPNNR------------------------ 353 (406)
Q Consensus 300 ~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~--~vi~~~~~~s~------------------------ 353 (406)
.+..+.. ..|..++++|++++..||++|+++.+|+|+|+.. .||+.+.|...
T Consensus 705 -~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~ 782 (850)
T TIGR01407 705 -VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDY 782 (850)
T ss_pred -EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHh
Confidence 3333333 5788999999999999999999999999999755 67788776421
Q ss_pred ------hhhHhhhhhccCCCCceeEEEEeccC--cHHHHHHHHHHHc
Q 015454 354 ------ELYIHRIGRSGRFGRKGVAINFVKND--DIKILRDIEQYYS 392 (406)
Q Consensus 354 ------~~~~Q~~GR~~R~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 392 (406)
..+.|.+||+-|...+.-++++++.+ ...+=+.+.+.+.
T Consensus 783 ~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 783 VLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred hHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 22569999999998886677777765 3334445555443
No 112
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.90 E-value=2.3e-21 Score=183.45 Aligned_cols=311 Identities=17% Similarity=0.188 Sum_probs=201.2
Q ss_pred CChHHHHHhHHhhhc---C-------CcEEEECCCCCChhhHhHHHHHhhhccCCCc-----eeEEEEcCcHHHHHHHHH
Q 015454 55 KPSAIQQRAVMPIIK---G-------RDVIAQAQSGTGKTSMIALTVCQTVDTSSRE-----VQALILSPTRELATQTEK 119 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~---~-------~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~-----~~~lil~P~~~l~~q~~~ 119 (406)
.++|||++.+..+.+ | ..+|+...+|+|||+.....+...+.. .+. .+.|||+| ..|+..|..
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq-~P~~~~~~~k~lVV~P-~sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQ-FPQAKPLINKPLVVAP-SSLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHh-CcCccccccccEEEcc-HHHHHHHHH
Confidence 589999999987765 2 347899999999997666544444433 334 67899999 889999999
Q ss_pred HHHHhccCcceeEEEEECCcchH--H-----hHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCc
Q 015454 120 VILAIGDFINIQAHACVGGKSVG--E-----DIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (406)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~ 192 (406)
++.++.....+....+.+..... . .........-+++.+++.+...... .....++++|+||.|..-+..
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~~- 392 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNSD- 392 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccchh-
Confidence 99999866667777777666630 0 0011112245788899998765543 445568999999999986554
Q ss_pred HHHHHHHHHhCCCCceEEEEEecCChH----------------------------------------------------H
Q 015454 193 KDQIYDVYRYLPPDLQVVLISATLPHE----------------------------------------------------I 220 (406)
Q Consensus 193 ~~~~~~~~~~~~~~~~~i~lSAT~~~~----------------------------------------------------~ 220 (406)
..+...+..+ ..++.|++|+||-.. +
T Consensus 393 -s~~~kaL~~l-~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL 470 (776)
T KOG0390|consen 393 -SLTLKALSSL-KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQEL 470 (776)
T ss_pred -hHHHHHHHhc-CCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHH
Confidence 2333344444 355678999996210 1
Q ss_pred HHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhh-------------------------------
Q 015454 221 LEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT------------------------------- 269 (406)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------------- 269 (406)
..+...++..... ..-...+++...+...+.........+..+++.
T Consensus 471 ~~~t~~fi~rrt~---~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~ 547 (776)
T KOG0390|consen 471 RELTNKFILRRTG---DILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCE 547 (776)
T ss_pred HHHHHhheeeccc---chhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccc
Confidence 1111111110000 000011222223333332222222221111111
Q ss_pred ------------------------------------------cC---CcceEEEecchhhHHHHHHHHhcCCceEEEeec
Q 015454 270 ------------------------------------------LT---ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHG 304 (406)
Q Consensus 270 ------------------------------------------~~---~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~ 304 (406)
.. ..++++..|.....+.+...++-.|+.+..++|
T Consensus 548 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG 627 (776)
T KOG0390|consen 548 KTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDG 627 (776)
T ss_pred cccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcC
Confidence 10 012333334444455555555557999999999
Q ss_pred CCCHHHHHHHHHHHhcCCC--cEE-EEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEE
Q 015454 305 DMPQKERDAIMGEFRSGTT--RVL-ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 375 (406)
Q Consensus 305 ~~~~~~r~~~~~~f~~~~~--~vl-i~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~ 375 (406)
.++..+|+.+++.|++... .|+ ..+.+.++|+++-+++.||++++.|+++.-.|+++|+.|.||+..|++|
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 9999999999999986543 444 5567899999999999999999999999999999999999999888876
No 113
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=9.6e-22 Score=187.13 Aligned_cols=313 Identities=22% Similarity=0.287 Sum_probs=205.9
Q ss_pred CChHHHHHhHHhhhcC----CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 55 KPSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~----~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.+++-|..++..+.+. ...++.+.||||||.+|+-.+...+.. |..+|+++|-.+|..|+.++++... +.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---GkqvLvLVPEI~Ltpq~~~rf~~rF---g~ 271 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---GKQVLVLVPEIALTPQLLARFKARF---GA 271 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---CCEEEEEeccccchHHHHHHHHHHh---CC
Confidence 5788999999988765 568999999999999999888877754 4579999999999999999998643 25
Q ss_pred eEEEEECCcchHH----hHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC-----cHHHHHHHHH
Q 015454 131 QAHACVGGKSVGE----DIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----FKDQIYDVYR 201 (406)
Q Consensus 131 ~~~~~~~~~~~~~----~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~-----~~~~~~~~~~ 201 (406)
.+..++++.+..+ +.+.......|+|+|-..+. ..+.++++||+||=|.-+-.+ +...-.++++
T Consensus 272 ~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~R 344 (730)
T COG1198 272 KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLR 344 (730)
T ss_pred ChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHH
Confidence 5666666555433 33334466899999964443 447789999999999754221 2222233344
Q ss_pred hCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccc---cCCceEEEEEeccc---------ccHHHHHHHHHhh
Q 015454 202 YLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELT---LEGIKQFFVAVERE---------EWKFDTLCDLYDT 269 (406)
Q Consensus 202 ~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---------~~~~~~l~~~~~~ 269 (406)
....+.++|+-||||+-+........ ............ .+.+. ....... ....+.+...++.
T Consensus 345 a~~~~~pvvLgSATPSLES~~~~~~g---~y~~~~L~~R~~~a~~p~v~--iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~ 419 (730)
T COG1198 345 AKKENAPVVLGSATPSLESYANAESG---KYKLLRLTNRAGRARLPRVE--IIDMRKEPLETGRSLSPALLEAIRKTLER 419 (730)
T ss_pred HHHhCCCEEEecCCCCHHHHHhhhcC---ceEEEEccccccccCCCcce--EEeccccccccCccCCHHHHHHHHHHHhc
Confidence 44456779999999886655544322 111111111111 12211 1111111 1122233333332
Q ss_pred cCCcceEEEecchhhH------------------------------------------------------------HHHH
Q 015454 270 LTITQAVIFCNTKRKV------------------------------------------------------------DWLT 289 (406)
Q Consensus 270 ~~~~k~lif~~~~~~~------------------------------------------------------------~~l~ 289 (406)
+.++|+|.|.+-.+ +++.
T Consensus 420 --geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gterie 497 (730)
T COG1198 420 --GEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIE 497 (730)
T ss_pred --CCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHH
Confidence 25777777744332 3333
Q ss_pred HHHhcC--CceEEEeecCCCHHH--HHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCC------------Ch
Q 015454 290 EKMRGY--NFTVSSMHGDMPQKE--RDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPN------------NR 353 (406)
Q Consensus 290 ~~l~~~--~~~~~~~~~~~~~~~--r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~------------s~ 353 (406)
+.|... +.++..+.++..... -+..++.|.+|+.+|||.|+++..|.|+|+++.|..++... ..
T Consensus 498 eeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~f 577 (730)
T COG1198 498 EELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTF 577 (730)
T ss_pred HHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHH
Confidence 333332 234666666655433 46789999999999999999999999999999988876542 23
Q ss_pred hhhHhhhhhccCCCCceeEEEEeccCcHHHHHHH
Q 015454 354 ELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDI 387 (406)
Q Consensus 354 ~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 387 (406)
..+.|-.||+||.+++|.+++-....|...+..+
T Consensus 578 qll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 578 QLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred HHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHH
Confidence 4578999999999999999998877664444433
No 114
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=1.8e-20 Score=180.09 Aligned_cols=131 Identities=24% Similarity=0.350 Sum_probs=113.1
Q ss_pred HHHHHHHHHhhc--CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCC
Q 015454 259 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 336 (406)
Q Consensus 259 ~~~~l~~~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 336 (406)
.++.+...++.+ .+.+++|||++++.++.+.+.|.+.|+.+..+|++++..+|..+++.|+.|+++|+|||+.+++|+
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 444555444433 335899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEec-----CCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHH
Q 015454 337 DVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQY 390 (406)
Q Consensus 337 d~~~~~~vi~~~-----~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (406)
|+|++++|++++ .|.+...|+|++||+||. ..|.+++|.+..+..+...+.+.
T Consensus 507 DiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred eeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 999999999987 688999999999999998 68999999998765554444443
No 115
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.89 E-value=1.4e-21 Score=184.09 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=115.5
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcc-eeEE
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN-IQAH 133 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~-~~~~ 133 (406)
.|..||.+.+..+-.++..++.|||.+|||++....+-..+.... ...++++.|+++|++|....+..-..... ....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD-~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESD-SDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcC-CCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 588999999999999999999999999999988887766665554 45599999999999999887765432222 2222
Q ss_pred EEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc---cCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEE
Q 015454 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR---KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (406)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~---~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i 210 (406)
.+.|.-..+..+. .-.|.|+|+-|+.+...+.. .......++++|+||+|.+.+..-+..+..+.... .+.++
T Consensus 590 sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L 665 (1330)
T KOG0949|consen 590 SLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFL 665 (1330)
T ss_pred hhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCee
Confidence 2233322222211 12489999999999988876 33445779999999999998776454445444443 24489
Q ss_pred EEEecCChH
Q 015454 211 LISATLPHE 219 (406)
Q Consensus 211 ~lSAT~~~~ 219 (406)
++|||..+.
T Consensus 666 ~LSATigN~ 674 (1330)
T KOG0949|consen 666 VLSATIGNP 674 (1330)
T ss_pred EEecccCCH
Confidence 999998653
No 116
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=1.1e-20 Score=171.58 Aligned_cols=302 Identities=16% Similarity=0.260 Sum_probs=207.2
Q ss_pred hHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHH-----hccCccee
Q 015454 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-----IGDFINIQ 131 (406)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~-----~~~~~~~~ 131 (406)
+++-.+.+.++..++-++|.|.||||||...--.+... .-.+.+.++-..-|++.-+..++.++.. +++..+.+
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~Ea-Gytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYs 345 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEA-GYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYS 345 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhc-ccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceE
Confidence 56667888888888889999999999997655444433 2233455588888999888777766543 33333433
Q ss_pred EEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhc-c-CcHHHHHHHHHhCCCCceE
Q 015454 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-R-GFKDQIYDVYRYLPPDLQV 209 (406)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~-~-~~~~~~~~~~~~~~~~~~~ 209 (406)
+..- +.. ....-|-++|.++|++-+... .++.++++||+||||.=.- . -....+..+. .+++..++
T Consensus 346 IRFE--dcT--------SekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIa-r~RpdLKl 413 (902)
T KOG0923|consen 346 IRFE--DCT--------SEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIA-RFRPDLKL 413 (902)
T ss_pred EEec--ccc--------CcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHH-hhCCcceE
Confidence 3221 111 122456789999999876553 4577899999999996311 1 1122333333 33578899
Q ss_pred EEEEecCChHHHHHHHhcCCC-CeEEEecCCccccCCceEEEEEecccccHHHHHHHHHh---hcCCcceEEEecchhhH
Q 015454 210 VLISATLPHEILEMTTKFMTD-PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD---TLTITQAVIFCNTKRKV 285 (406)
Q Consensus 210 i~lSAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~k~lif~~~~~~~ 285 (406)
+++|||+..+ ..+.++.+ |+..+.. .. ..+..+|...+..+.....+..+++ ..+.+-+|||..-.++.
T Consensus 414 lIsSAT~DAe---kFS~fFDdapIF~iPG-RR---yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEI 486 (902)
T KOG0923|consen 414 LISSATMDAE---KFSAFFDDAPIFRIPG-RR---YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEI 486 (902)
T ss_pred EeeccccCHH---HHHHhccCCcEEeccC-cc---cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHH
Confidence 9999998753 33344443 4443322 21 2334455555555544455555554 33457899999988887
Q ss_pred HHHHHHHhc----CC-----ceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecC-------
Q 015454 286 DWLTEKMRG----YN-----FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL------- 349 (406)
Q Consensus 286 ~~l~~~l~~----~~-----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~------- 349 (406)
+...+.|.+ +| +-+..+|+.++.+....+++---.|-.+|++||++++.++.++++..||.-+.
T Consensus 487 Et~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsyn 566 (902)
T KOG0923|consen 487 ETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYN 566 (902)
T ss_pred HHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcC
Confidence 766666543 22 34778999999999999998888888999999999999999999999996443
Q ss_pred -----------CCChhhhHhhhhhccCCCCceeEEEEeccC
Q 015454 350 -----------PNNRELYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 350 -----------~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
|.|-++-.||.||+||.| +|+|+.+++..
T Consensus 567 prtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 567 PRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred CCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 456777899999999997 99999998853
No 117
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.88 E-value=1.3e-20 Score=158.19 Aligned_cols=185 Identities=36% Similarity=0.601 Sum_probs=148.2
Q ss_pred CCCCCChHHHHHhHHhhhcC-CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcc
Q 015454 51 YGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~-~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (406)
.++..++++|.+++..+... +++++.+|||+|||.++..+++..+.... ..++++++|+..++.|+...+.+......
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 46678999999999999998 99999999999999988888888776543 35799999999999999999988776544
Q ss_pred eeEEEEECCcchHHhHHHHhcCC-CEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCce
Q 015454 130 IQAHACVGGKSVGEDIRKLEHGV-HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (406)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~-~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~ 208 (406)
.......++......+.....+. +++++|++.+...+.........++++|+||+|.+....+...+..+...+++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 162 (201)
T smart00487 83 LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQ 162 (201)
T ss_pred eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccce
Confidence 33333444444344444455555 99999999999988887667778899999999999875677788888888877889
Q ss_pred EEEEEecCChHHHHHHHhcCCCCeEEEe
Q 015454 209 VVLISATLPHEILEMTTKFMTDPVKILV 236 (406)
Q Consensus 209 ~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 236 (406)
++++|||+++........+......+..
T Consensus 163 ~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 163 LLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred EEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 9999999998877777777765555443
No 118
>COG4889 Predicted helicase [General function prediction only]
Probab=99.88 E-value=3e-22 Score=186.62 Aligned_cols=328 Identities=17% Similarity=0.225 Sum_probs=193.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcC----CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEc
Q 015454 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (406)
Q Consensus 33 ~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~----~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~ 108 (406)
-.|+.+.. ..+...+.-.....|||||+.|+....+| .+.-+.+.+|+|||++.+-.. ..+. ..++|+++
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkis-Eala----~~~iL~Lv 213 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKIS-EALA----AARILFLV 213 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHH-HHHh----hhheEeec
Confidence 34544432 23344444445668999999999988775 457788999999999887643 3332 25799999
Q ss_pred CcHHHHHHHHHHHHHhccCcceeEEEEECCcchH-----------------------HhHH--HHhcCCCEEEechHHHH
Q 015454 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVG-----------------------EDIR--KLEHGVHVVSGTPGRVC 163 (406)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~--~~~~~~~iii~T~~~l~ 163 (406)
|+.+|..|+.+.+..-. ...+....++.+.... ..+. ....+--|+++|++++.
T Consensus 214 PSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~ 292 (1518)
T COG4889 214 PSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP 292 (1518)
T ss_pred chHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH
Confidence 99999999988886543 2333333333321111 1111 12234568999999998
Q ss_pred HHHHccCCCcCCcceeecchhhHHhccCcHH-HHHHHHHhCC----CCceEEEEEecCChH---HHHHHHh---------
Q 015454 164 DMIKRKTLRTRAIKLLVLDESDEMLSRGFKD-QIYDVYRYLP----PDLQVVLISATLPHE---ILEMTTK--------- 226 (406)
Q Consensus 164 ~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~-~~~~~~~~~~----~~~~~i~lSAT~~~~---~~~~~~~--------- 226 (406)
..-+....-+..+++||+||||+........ .-.++.+... +..+.+.|||||.-. .+.....
T Consensus 293 ~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMD 372 (1518)
T COG4889 293 RIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMD 372 (1518)
T ss_pred HHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccc
Confidence 8777777778889999999999865332110 0001100000 123467899997211 0110000
Q ss_pred ---------------------cCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhc-------C-------
Q 015454 227 ---------------------FMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-------T------- 271 (406)
Q Consensus 227 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~------- 271 (406)
++.+...+....++.......+....-+......+....++..+ .
T Consensus 373 De~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~ 452 (1518)
T COG4889 373 DELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKN 452 (1518)
T ss_pred hhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccC
Confidence 11111111111111111110010011111111222222222111 1
Q ss_pred -------CcceEEEecchhhHHHHHHHHhc---------------CCceEEEeecCCCHHHHHHHHH---HHhcCCCcEE
Q 015454 272 -------ITQAVIFCNTKRKVDWLTEKMRG---------------YNFTVSSMHGDMPQKERDAIMG---EFRSGTTRVL 326 (406)
Q Consensus 272 -------~~k~lif~~~~~~~~~l~~~l~~---------------~~~~~~~~~~~~~~~~r~~~~~---~f~~~~~~vl 326 (406)
..+.+-||.++++...+++.+.. ..+.+..+.|.|+-.+|...+. .|...+++||
T Consensus 453 ~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIl 532 (1518)
T COG4889 453 IKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKIL 532 (1518)
T ss_pred CcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheee
Confidence 03578899988877666655531 2334556668888888854433 3345678888
Q ss_pred EEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCC
Q 015454 327 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 367 (406)
Q Consensus 327 i~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 367 (406)
--...+++|+|+|.++.||++++..++.+.+|.+||++|-.
T Consensus 533 SNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 533 SNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred ccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 88889999999999999999999999999999999999963
No 119
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.87 E-value=3.7e-20 Score=164.66 Aligned_cols=165 Identities=24% Similarity=0.292 Sum_probs=123.7
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhc-CCcceEEEecchhhH
Q 015454 207 LQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKV 285 (406)
Q Consensus 207 ~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~k~lif~~~~~~~ 285 (406)
+|++++||||.+.-.+.... ..+.-.+.+....-+ .....+...+..+.+..+.+.. .+.++||-+=+++.+
T Consensus 387 ~q~i~VSATPg~~E~e~s~~---~vveQiIRPTGLlDP----~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmA 459 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGG---NVVEQIIRPTGLLDP----EIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMA 459 (663)
T ss_pred CCEEEEECCCChHHHHhccC---ceeEEeecCCCCCCC----ceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHH
Confidence 68999999998854433221 112222211111111 1112222222334444444322 336999999999999
Q ss_pred HHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCC-----CChhhhHhhh
Q 015454 286 DWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP-----NNRELYIHRI 360 (406)
Q Consensus 286 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~-----~s~~~~~Q~~ 360 (406)
+.+.++|.+.|+++..+|++.+.-+|.+++.+.+.|.++|||+.+.+-+|+|+|.+..|.+++.. .|..+++|.+
T Consensus 460 EdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtI 539 (663)
T COG0556 460 EDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTI 539 (663)
T ss_pred HHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998764 6889999999
Q ss_pred hhccCCCCceeEEEEeccC
Q 015454 361 GRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 361 GR~~R~~~~~~~~~~~~~~ 379 (406)
||+.|. -.|+++.|.+.-
T Consensus 540 GRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 540 GRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHhhc-cCCeEEEEchhh
Confidence 999998 478888887754
No 120
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=3.3e-21 Score=169.66 Aligned_cols=290 Identities=19% Similarity=0.200 Sum_probs=192.1
Q ss_pred CChHHHHHhHHhhhcC---CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCccee
Q 015454 55 KPSAIQQRAVMPIIKG---RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~---~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (406)
.++|||..++.....+ ++.++..|+|+|||++-.-+++.- ...+|++|.+...+.||..++..+....+-.
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~d~~ 375 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQ 375 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccCccc
Confidence 6799999999987754 568999999999997655444322 3468999999999999999999998766666
Q ss_pred EEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc--------cCCCcCCcceeecchhhHHhccCcHHHHHHHHHhC
Q 015454 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (406)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~--------~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~ 203 (406)
+..+..+... ....++.|+|+|+.++...-.+ ..+..+.++++++||+|.+-...|+..+.-+....
T Consensus 376 i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHc 450 (776)
T KOG1123|consen 376 ICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHC 450 (776)
T ss_pred eEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHh
Confidence 7776655442 2346789999999887633211 11234668999999999886666665554443332
Q ss_pred CCCceEEEEEecCChH--------------HHHH--HHh-cCCCCeEEEecC--Ccccc--------CCc--eEEEEEec
Q 015454 204 PPDLQVVLISATLPHE--------------ILEM--TTK-FMTDPVKILVKR--DELTL--------EGI--KQFFVAVE 254 (406)
Q Consensus 204 ~~~~~~i~lSAT~~~~--------------~~~~--~~~-~~~~~~~~~~~~--~~~~~--------~~~--~~~~~~~~ 254 (406)
-+++|||+-.+ +.+. ..- -.+....+.+.. -.... .+. ........
T Consensus 451 -----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMN 525 (776)
T KOG1123|consen 451 -----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMN 525 (776)
T ss_pred -----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecC
Confidence 48999997221 1110 000 001111111100 00000 000 01111111
Q ss_pred ccccHHHHHHHHHhh--cCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhc-CCCcEEEEcCc
Q 015454 255 REEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS-GTTRVLITTDV 331 (406)
Q Consensus 255 ~~~~~~~~l~~~~~~--~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~ 331 (406)
..|+..-.-+++. ..++|+|||..+.-....++-.|.+ ..++|..++.+|.++++.|+- ..+..++.+.+
T Consensus 526 --P~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKV 598 (776)
T KOG1123|consen 526 --PNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKV 598 (776)
T ss_pred --cchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeec
Confidence 1133333333332 2557999999987766666655533 457899999999999999974 46688889999
Q ss_pred ccCCCCCCCCCEEEEecCC-CChhhhHhhhhhccCCC
Q 015454 332 WARGLDVQQVSLVINYDLP-NNRELYIHRIGRSGRFG 367 (406)
Q Consensus 332 ~~~G~d~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~~ 367 (406)
...++|+|.++++|+.+.. .|-.+-.||+||.-|..
T Consensus 599 gDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 599 GDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred cCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 9999999999999998765 56778899999999974
No 121
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.87 E-value=1.9e-19 Score=174.44 Aligned_cols=143 Identities=26% Similarity=0.376 Sum_probs=124.0
Q ss_pred HHHHHHHHHhhc--CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCC
Q 015454 259 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 336 (406)
Q Consensus 259 ~~~~l~~~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 336 (406)
....+...+..+ .+.+++|||++.+.++.+++.|.+.|+++..+||+++..+|..+++.|+.|++.|+|||+.+++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 344444444433 235899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecC-----CCChhhhHhhhhhccCCCCceeEEEEecc---------CcHHHHHHHHHHHccccccCCccc
Q 015454 337 DVQQVSLVINYDL-----PNNRELYIHRIGRSGRFGRKGVAINFVKN---------DDIKILRDIEQYYSTQIDEMPMNV 402 (406)
Q Consensus 337 d~~~~~~vi~~~~-----~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 402 (406)
|+|++++|++++. |.+...|+||+||+||. ..|.++.|++. .+....+++++.++....-+|.+.
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 9999999998875 67899999999999996 68999999984 466777888888888888887654
No 122
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.87 E-value=2.8e-19 Score=176.83 Aligned_cols=328 Identities=16% Similarity=0.176 Sum_probs=199.5
Q ss_pred CCCCCChHHHHHhHHh----hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHH-HHHHHHhc
Q 015454 51 YGFEKPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT-EKVILAIG 125 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~----i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~-~~~~~~~~ 125 (406)
.|| ..|+-|.+.... +.++..+++.|+||+|||++|++|++... .+.+++|++||++|++|. .+.+..+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 356 689999985544 34467899999999999999999987653 246799999999999999 46666665
Q ss_pred cCcceeEEEEECCcchH---------------------------------------------------------------
Q 015454 126 DFINIQAHACVGGKSVG--------------------------------------------------------------- 142 (406)
Q Consensus 126 ~~~~~~~~~~~~~~~~~--------------------------------------------------------------- 142 (406)
...++.+..+.|+.++-
T Consensus 317 ~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~c 396 (820)
T PRK07246 317 EVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSS 396 (820)
T ss_pred HhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCC
Confidence 55555555444432111
Q ss_pred --------HhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC-----cH-------H--------
Q 015454 143 --------EDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----FK-------D-------- 194 (406)
Q Consensus 143 --------~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~-----~~-------~-------- 194 (406)
...+......+|+|+....|...+.... .+...+++||||||++.+.. .. .
T Consensus 397 p~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (820)
T PRK07246 397 LFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSG 475 (820)
T ss_pred CcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHH
Confidence 0001112336899999998887664433 25678999999999874211 00 0
Q ss_pred ------------------------------------------HHHHH--------HHh----------------------
Q 015454 195 ------------------------------------------QIYDV--------YRY---------------------- 202 (406)
Q Consensus 195 ------------------------------------------~~~~~--------~~~---------------------- 202 (406)
.+..+ ...
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~ 555 (820)
T PRK07246 476 PLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTY 555 (820)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeE
Confidence 00000 000
Q ss_pred --------------CCCCceEEEEEecCC--hHHHHHHHhcCCCCeEEEecCCccccCCceEEEEE--eccc-----cc-
Q 015454 203 --------------LPPDLQVVLISATLP--HEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA--VERE-----EW- 258 (406)
Q Consensus 203 --------------~~~~~~~i~lSAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~- 258 (406)
++....+|++|||++ +.. .+...+..+........ .....-...+.. .+.. +.
T Consensus 556 l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~~~~--~~~~~~~~~~i~~~~p~~~~~~~~~~ 632 (820)
T PRK07246 556 LNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLFHKIE--KDKKQDQLVVVDQDMPLVTETSDEVY 632 (820)
T ss_pred EEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccceecCC--CChHHccEEEeCCCCCCCCCCChHHH
Confidence 001136788999984 221 23222221111111111 111111111111 1111 11
Q ss_pred ---HHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCC
Q 015454 259 ---KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARG 335 (406)
Q Consensus 259 ---~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 335 (406)
..+.+..+. ...++++|+++|.+..+.+++.|......+ ..-|... .+..++++|++++..||++|.++.+|
T Consensus 633 ~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEG 707 (820)
T PRK07246 633 AEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEG 707 (820)
T ss_pred HHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCC
Confidence 122333333 234799999999999999999997654444 3334222 35668999999988999999999999
Q ss_pred CCCC--CCCEEEEecCCCC-h-----------------------------hhhHhhhhhccCCCCceeEEEEeccC--cH
Q 015454 336 LDVQ--QVSLVINYDLPNN-R-----------------------------ELYIHRIGRSGRFGRKGVAINFVKND--DI 381 (406)
Q Consensus 336 ~d~~--~~~~vi~~~~~~s-~-----------------------------~~~~Q~~GR~~R~~~~~~~~~~~~~~--~~ 381 (406)
+|+| ....||+.+.|.. + ..+.|.+||.-|...+.-++++++++ ..
T Consensus 708 VD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k 787 (820)
T PRK07246 708 VDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTK 787 (820)
T ss_pred CCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCccccc
Confidence 9997 3566778777632 1 22569999999998776677777766 23
Q ss_pred HHHHHHHHHHc
Q 015454 382 KILRDIEQYYS 392 (406)
Q Consensus 382 ~~~~~~~~~~~ 392 (406)
.+-+.+.+.+-
T Consensus 788 ~Yg~~~l~sLP 798 (820)
T PRK07246 788 SYGKQILASLA 798 (820)
T ss_pred HHHHHHHHhCC
Confidence 34445544443
No 123
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=9.6e-21 Score=182.45 Aligned_cols=123 Identities=19% Similarity=0.276 Sum_probs=107.6
Q ss_pred ccHHHHHHHHHhhc--CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccC
Q 015454 257 EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWAR 334 (406)
Q Consensus 257 ~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~ 334 (406)
..+...+...+... .+.++||||+|++.++.+.+.|...++++..+|+ .+.+|+..+..|..+...|+|||+++++
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 34777777777543 4569999999999999999999999999999997 4789999999999999999999999999
Q ss_pred CCCCC---CCC-----EEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcH
Q 015454 335 GLDVQ---QVS-----LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 381 (406)
Q Consensus 335 G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 381 (406)
|.|++ .+. +||....|.|...|.|+.||+||.|.+|.+..|++.+|.
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99998 443 347788888999999999999999999999999997654
No 124
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.87 E-value=1.4e-20 Score=181.12 Aligned_cols=328 Identities=18% Similarity=0.235 Sum_probs=215.8
Q ss_pred CChHHHHHhHHhhhc----CCcEEEECCCCCChhhHhHHHHHhhhccC------CCceeEEEEcCcHHHHHHHHHHHHHh
Q 015454 55 KPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTS------SREVQALILSPTRELATQTEKVILAI 124 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~----~~~~il~~~tGsGKT~~~~~~i~~~~~~~------~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (406)
.||.||++-++++.- +-+.|++..+|-|||+..+-.+....+.. ......||+|| ..|+.-|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCP-sTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCP-STLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECC-chhhhHHHHHHHHh
Confidence 579999999887542 56899999999999976654444333222 11234899999 77888899999998
Q ss_pred ccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCC
Q 015454 125 GDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (406)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~ 204 (406)
... +++....|+.......+...+..+|+|++|+.+.+-+.. +....+.++|+||-|.+-+.. ..+....+.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~k--tkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNSK--TKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecchH--HHHHHHHHHHh
Confidence 876 555555666665555555556689999999988743322 223446789999999886543 44555555554
Q ss_pred CCceEEEEEecCChH-------------------------------------------------------------HHH-
Q 015454 205 PDLQVVLISATLPHE-------------------------------------------------------------ILE- 222 (406)
Q Consensus 205 ~~~~~i~lSAT~~~~-------------------------------------------------------------~~~- 222 (406)
... .+.+|+||-.. +..
T Consensus 1128 a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 ANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444 57789994100 000
Q ss_pred ---------------------------HHHhcCCCC-eEE--EecCCccccCCc---------------eEEEEEec---
Q 015454 223 ---------------------------MTTKFMTDP-VKI--LVKRDELTLEGI---------------KQFFVAVE--- 254 (406)
Q Consensus 223 ---------------------------~~~~~~~~~-~~~--~~~~~~~~~~~~---------------~~~~~~~~--- 254 (406)
....+.... ..+ ..+......... .+--....
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 000000000 000 000000000000 00000000
Q ss_pred --------------------ccccHHHHHHHHHhhcCC----------------cceEEEecchhhHHHHHHHHhcC---
Q 015454 255 --------------------REEWKFDTLCDLYDTLTI----------------TQAVIFCNTKRKVDWLTEKMRGY--- 295 (406)
Q Consensus 255 --------------------~~~~~~~~l~~~~~~~~~----------------~k~lif~~~~~~~~~l~~~l~~~--- 295 (406)
....|...|..++..... .|+||||+-+...+-+.+.|.+.
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 012256677777654432 47999999999999888877553
Q ss_pred CceEEEeecCCCHHHHHHHHHHHhcC-CCcEEE-EcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEE
Q 015454 296 NFTVSSMHGDMPQKERDAIMGEFRSG-TTRVLI-TTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 373 (406)
Q Consensus 296 ~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli-~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~ 373 (406)
.+.+..+.|..++.+|.++.++|+++ .++||+ +|.+.+.|+|+.+++.||+++-.|++..=.|++.||+|.|++..+.
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 23455789999999999999999998 678775 6789999999999999999999999999999999999999987665
Q ss_pred EE--ec-cCcHHHHHHHHHH
Q 015454 374 NF--VK-NDDIKILRDIEQY 390 (406)
Q Consensus 374 ~~--~~-~~~~~~~~~~~~~ 390 (406)
+| +. ..-++.+..++++
T Consensus 1447 VyRlItrGTLEEKVMgLQkF 1466 (1549)
T KOG0392|consen 1447 VYRLITRGTLEEKVMGLQKF 1466 (1549)
T ss_pred eeeehhcccHHHHHhhHHHH
Confidence 54 33 3445555555543
No 125
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.87 E-value=8e-21 Score=182.91 Aligned_cols=315 Identities=17% Similarity=0.237 Sum_probs=214.2
Q ss_pred hHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHH-hccCcceeEEEE
Q 015454 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAHAC 135 (406)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~~ 135 (406)
+..+.+.+..+.+++-+++.|.||+|||....-.++.....+++..+++..-|++--+..+++++.. .+...+-.++.-
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYq 254 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQ 254 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEE
Confidence 6778888899999999999999999999888877887765555777899999998888888877653 222233222222
Q ss_pred ECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhcc-CcHHHHHHHHHhCCCCceEEEEEe
Q 015454 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISA 214 (406)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lSA 214 (406)
.+..+. ......+.+||.+.|++.+.. .-.+.++..||+||+|+=.-. .+--.+...+-...+..++|+|||
T Consensus 255 vrl~~~------~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSA 327 (924)
T KOG0920|consen 255 VRLESK------RSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSA 327 (924)
T ss_pred Eeeecc------cCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeee
Confidence 211111 122368999999999998887 444677999999999974332 233222333333357899999999
Q ss_pred cCChHHHHHHHhcCCCCeEEEecCCcccc----------------CCceEEEEE-----------ecccccHHHH----H
Q 015454 215 TLPHEILEMTTKFMTDPVKILVKRDELTL----------------EGIKQFFVA-----------VEREEWKFDT----L 263 (406)
Q Consensus 215 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~-----------~~~~~~~~~~----l 263 (406)
|+..+. ...+++....+.......+. ......... ....+-..+. +
T Consensus 328 T~dae~---fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li 404 (924)
T KOG0920|consen 328 TLDAEL---FSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLI 404 (924)
T ss_pred ecchHH---HHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHH
Confidence 987432 22222222222111111100 000000000 0001112222 2
Q ss_pred HHHHhhcCCcceEEEecchhhHHHHHHHHhcC-------CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCC
Q 015454 264 CDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY-------NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 336 (406)
Q Consensus 264 ~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 336 (406)
..+......+.+|||.+....+..+.+.|... .+-+..+|+.++..+...++...-.|..+|+++|++++.++
T Consensus 405 ~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSI 484 (924)
T KOG0920|consen 405 EYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSI 484 (924)
T ss_pred HhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcc
Confidence 23333434578999999999999999999642 25678899999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecCC------------------CChhhhHhhhhhccCCCCceeEEEEeccCcHH
Q 015454 337 DVQQVSLVINYDLP------------------NNRELYIHRIGRSGRFGRKGVAINFVKNDDIK 382 (406)
Q Consensus 337 d~~~~~~vi~~~~~------------------~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 382 (406)
.++++-.||..+.. -|...-.||.||+||. ++|.|+-+++.....
T Consensus 485 TIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 485 TIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYE 547 (924)
T ss_pred cccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhh
Confidence 99999999975532 2456678999999999 699999999876443
No 126
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.86 E-value=2.9e-21 Score=186.17 Aligned_cols=329 Identities=17% Similarity=0.204 Sum_probs=215.0
Q ss_pred CCChHHHHHhHHhhhc----CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcc
Q 015454 54 EKPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (406)
Q Consensus 54 ~~l~~~Q~~~~~~i~~----~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (406)
.+|+.||.+-++.++. ++++|+...+|-|||..-.-.+-.......-.+..|+|+|... +..|.+.+..+. +
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst-~~~W~~ef~~w~---~ 444 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLST-ITAWEREFETWT---D 444 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhh-hHHHHHHHHHHh---h
Confidence 5899999999887654 7899999999999995433333222222222334899999665 555666677765 5
Q ss_pred eeEEEEECCcchHHhHHHHh----c-----CCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHH
Q 015454 130 IQAHACVGGKSVGEDIRKLE----H-----GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 200 (406)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~----~-----~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~ 200 (406)
..+...+|.....+.++... . ..+++++|++.+++-- ..+..-.+.++++||||++-+.. ..+...+
T Consensus 445 mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk--~~L~~i~w~~~~vDeahrLkN~~--~~l~~~l 520 (1373)
T KOG0384|consen 445 MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK--AELSKIPWRYLLVDEAHRLKNDE--SKLYESL 520 (1373)
T ss_pred hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH--hhhccCCcceeeecHHhhcCchH--HHHHHHH
Confidence 67777788777666554431 2 3789999999887532 22333457899999999997654 2233334
Q ss_pred HhCCCCceEEEEEecCChHHHHHHHhcC--CCC-----------------------------------------------
Q 015454 201 RYLPPDLQVVLISATLPHEILEMTTKFM--TDP----------------------------------------------- 231 (406)
Q Consensus 201 ~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~~----------------------------------------------- 231 (406)
..+.-+. .+++|+||-.....-+..++ ..|
T Consensus 521 ~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k 599 (1373)
T KOG0384|consen 521 NQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPK 599 (1373)
T ss_pred HHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCC
Confidence 4444333 57889997332111111100 000
Q ss_pred -eEEE-ecCCcc--------------------cc--CCc-----------eEEEEEeccccc---------HHHHHHHHH
Q 015454 232 -VKIL-VKRDEL--------------------TL--EGI-----------KQFFVAVEREEW---------KFDTLCDLY 267 (406)
Q Consensus 232 -~~~~-~~~~~~--------------------~~--~~~-----------~~~~~~~~~~~~---------~~~~l~~~~ 267 (406)
..+. +.-... .. .+. .+-|..-..... ....|..++
T Consensus 600 ~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI 679 (1373)
T KOG0384|consen 600 EETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALI 679 (1373)
T ss_pred cceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHH
Confidence 0000 000000 00 000 000000000000 012333333
Q ss_pred hhc---------------CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhc---CCCcEEEEc
Q 015454 268 DTL---------------TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS---GTTRVLITT 329 (406)
Q Consensus 268 ~~~---------------~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---~~~~vli~t 329 (406)
... .+.+||||.+.+...+.|+++|...+++..-+.|....+.|...++.|+. .++.+|++|
T Consensus 680 ~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLST 759 (1373)
T KOG0384|consen 680 QSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLST 759 (1373)
T ss_pred HhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEec
Confidence 322 12589999999999999999999999999999999999999999999975 456799999
Q ss_pred CcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCcee--EEEEeccC--cHHHHHHHHHHH
Q 015454 330 DVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV--AINFVKND--DIKILRDIEQYY 391 (406)
Q Consensus 330 ~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~--~~~~~~~~--~~~~~~~~~~~~ 391 (406)
.+.+-|||+..++.||+|+..|++..=+|+..|++|.|++.. ++.+++.. +.+.+++-...|
T Consensus 760 RAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~Km 825 (1373)
T KOG0384|consen 760 RAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKM 825 (1373)
T ss_pred ccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998855 45556655 445555554444
No 127
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=3.1e-19 Score=167.40 Aligned_cols=316 Identities=16% Similarity=0.181 Sum_probs=213.9
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|+ .|++.|.-..-.+..| -+..+.||+|||+++.+++...... |..+-+++|+.-|+.+-++++..+....++
T Consensus 75 lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~---G~~VhvvT~NdyLA~RDae~m~~ly~~LGL 148 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ---GRRVHVITVNDYLARRDAEWMGPLYEALGL 148 (764)
T ss_pred cCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc---CCCeEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 355 6888888888777766 5779999999999999888766544 445899999999999999999999999999
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHHH-HHHHccC------CCcCCcceeecchhhHHhccC------------
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRKT------LRTRAIKLLVLDESDEMLSRG------------ 191 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~-~~l~~~~------~~~~~~~~vV~DE~h~~~~~~------------ 191 (406)
++..+.++.+..++...+ .++|..+|...|- ++++++. ...+.+.+.|+||++.++-..
T Consensus 149 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~ 226 (764)
T PRK12326 149 TVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTP 226 (764)
T ss_pred EEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCc
Confidence 999988877765544444 4899999977653 3333321 123668899999999853110
Q ss_pred ---cHHHHHHHHHhCCC---------------------------------------------------------------
Q 015454 192 ---FKDQIYDVYRYLPP--------------------------------------------------------------- 205 (406)
Q Consensus 192 ---~~~~~~~~~~~~~~--------------------------------------------------------------- 205 (406)
....+..+...+.+
T Consensus 227 ~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 306 (764)
T PRK12326 227 GEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIV 306 (764)
T ss_pred chhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 00011111111110
Q ss_pred -------------------------------------------------------CceEEEEEecCChHHHHHHHhcCCC
Q 015454 206 -------------------------------------------------------DLQVVLISATLPHEILEMTTKFMTD 230 (406)
Q Consensus 206 -------------------------------------------------------~~~~i~lSAT~~~~~~~~~~~~~~~ 230 (406)
-.++.+||+|......++..-+-..
T Consensus 307 ~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~ 386 (764)
T PRK12326 307 RDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLG 386 (764)
T ss_pred ECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCc
Confidence 0367788888766544444333322
Q ss_pred CeEEEecCCccccCCceEEEEEecccccHHHHHHHHH-hhc-CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCH
Q 015454 231 PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY-DTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ 308 (406)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 308 (406)
.+.+. ...+................+...+..-+ +.+ .+.++||.+.|++..+.+++.|.+.|++..++++....
T Consensus 387 Vv~IP---tnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~ 463 (764)
T PRK12326 387 VSVIP---PNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDA 463 (764)
T ss_pred EEECC---CCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchH
Confidence 22111 11111111111111222333554444433 333 33589999999999999999999999999999987443
Q ss_pred HHHHHHHHHHhcCC-CcEEEEcCcccCCCCCC---------------CCCEEEEecCCCChhhhHhhhhhccCCCCceeE
Q 015454 309 KERDAIMGEFRSGT-TRVLITTDVWARGLDVQ---------------QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 372 (406)
Q Consensus 309 ~~r~~~~~~f~~~~-~~vli~t~~~~~G~d~~---------------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~ 372 (406)
.+ ..++. ..|+ ..|.|||+++++|-|+. +--+||....+.|...-.|..||+||.|.+|.+
T Consensus 464 ~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss 540 (764)
T PRK12326 464 EE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSS 540 (764)
T ss_pred hH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCce
Confidence 33 33333 2454 36899999999999975 223788888899999999999999999999999
Q ss_pred EEEeccCc
Q 015454 373 INFVKNDD 380 (406)
Q Consensus 373 ~~~~~~~~ 380 (406)
..|++-+|
T Consensus 541 ~f~lSleD 548 (764)
T PRK12326 541 VFFVSLED 548 (764)
T ss_pred eEEEEcch
Confidence 98888655
No 128
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.86 E-value=1.6e-19 Score=158.96 Aligned_cols=336 Identities=15% Similarity=0.175 Sum_probs=212.5
Q ss_pred HHHHHHHHCCCCCChHHHHHhHHhh-hcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHH
Q 015454 43 DLLRGIYQYGFEKPSAIQQRAVMPI-IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (406)
Q Consensus 43 ~i~~~l~~~~~~~l~~~Q~~~~~~i-~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (406)
++...+...-+..|-|+|++-+... .+|.++++...+|-|||+.++-.. ..+..+ ...||+|| ..+.-.|.+.+
T Consensus 186 ~l~ev~d~kLvs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA-~yyraE---wplliVcP-AsvrftWa~al 260 (689)
T KOG1000|consen 186 DLNEVMDPKLVSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIA-RYYRAE---WPLLIVCP-ASVRFTWAKAL 260 (689)
T ss_pred HHhhccCHHHHHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHH-HHHhhc---CcEEEEec-HHHhHHHHHHH
Confidence 3333333333456889999998864 458899999999999997766433 222222 24899999 66778889999
Q ss_pred HHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHH
Q 015454 122 LAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 201 (406)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~ 201 (406)
.++...... +....++.+.... ......|.|.+++.+..+-. .+....+++||+||+|.+-+..- .....+..
T Consensus 261 ~r~lps~~p-i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~skt-kr~Ka~~d 333 (689)
T KOG1000|consen 261 NRFLPSIHP-IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSKT-KRTKAATD 333 (689)
T ss_pred HHhcccccc-eEEEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccch-hhhhhhhh
Confidence 988754433 3333333332211 12225789999998876532 33345589999999998866542 23444444
Q ss_pred hCCCCceEEEEEecCC----h---------------HHHHHHHhcCCC-CeEEEec--CC--------------------
Q 015454 202 YLPPDLQVVLISATLP----H---------------EILEMTTKFMTD-PVKILVK--RD-------------------- 239 (406)
Q Consensus 202 ~~~~~~~~i~lSAT~~----~---------------~~~~~~~~~~~~-~~~~~~~--~~-------------------- 239 (406)
.+....++|++|+||. . ...++..+++.. ...+..+ ..
T Consensus 334 llk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK 413 (689)
T KOG1000|consen 334 LLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLK 413 (689)
T ss_pred HHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4445567999999972 1 111122222111 0000000 00
Q ss_pred -----ccccCCceEEEEEe-ccc-----------------------------------ccHHHHHHHHHhh------cCC
Q 015454 240 -----ELTLEGIKQFFVAV-ERE-----------------------------------EWKFDTLCDLYDT------LTI 272 (406)
Q Consensus 240 -----~~~~~~~~~~~~~~-~~~-----------------------------------~~~~~~l~~~~~~------~~~ 272 (406)
..++. ....+... .+. ..|...+.+.+.. .+.
T Consensus 414 ~dvL~qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~ 492 (689)
T KOG1000|consen 414 ADVLKQLPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPP 492 (689)
T ss_pred HHHHhhCCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCC
Confidence 00111 01111111 000 0022223333322 123
Q ss_pred cceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcC-CCcE-EEEcCcccCCCCCCCCCEEEEecCC
Q 015454 273 TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSG-TTRV-LITTDVWARGLDVQQVSLVINYDLP 350 (406)
Q Consensus 273 ~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~v-li~t~~~~~G~d~~~~~~vi~~~~~ 350 (406)
.|.+||+......+.+...+.+.++...-+.|..+..+|....+.|... +..| ++...+.++|+++..++.|++...+
T Consensus 493 ~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~ 572 (689)
T KOG1000|consen 493 RKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELH 572 (689)
T ss_pred ceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEec
Confidence 5899999999999999999999999999999999999999999999754 4444 3456788999999999999999999
Q ss_pred CChhhhHhhhhhccCCCCceeEEEE--eccC--cHHHHHHHHHHH
Q 015454 351 NNRELYIHRIGRSGRFGRKGVAINF--VKND--DIKILRDIEQYY 391 (406)
Q Consensus 351 ~s~~~~~Q~~GR~~R~~~~~~~~~~--~~~~--~~~~~~~~~~~~ 391 (406)
|++.-++|.-.|++|.|+++.+.++ +... |......+.+.+
T Consensus 573 wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 573 WNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred CCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 9999999999999999998654433 3333 333444454444
No 129
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.86 E-value=6.6e-20 Score=169.68 Aligned_cols=322 Identities=14% Similarity=0.189 Sum_probs=214.2
Q ss_pred CCCCChHHHHHhHHhhh----cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccC
Q 015454 52 GFEKPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (406)
Q Consensus 52 ~~~~l~~~Q~~~~~~i~----~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (406)
++ +|-+||.--++++. .+-+.|+...+|-|||...+..+......+. .+..|||||+.. ..+|.+++.+||..
T Consensus 397 ~i-~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-~gpHLVVvPsST-leNWlrEf~kwCPs 473 (941)
T KOG0389|consen 397 GI-QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-PGPHLVVVPSST-LENWLREFAKWCPS 473 (941)
T ss_pred CC-cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCC-CCCcEEEecchh-HHHHHHHHHHhCCc
Confidence 45 58999998887653 3567899999999999554433333333333 445899999766 56677788898755
Q ss_pred cceeEEEEECCcchHHhHHHH----hcCCCEEEechHHHHHHHHc-cCCCcCCcceeecchhhHHhccCcHHHHHHHHHh
Q 015454 128 INIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 202 (406)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~l~~-~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~ 202 (406)
+.+...+|......+++.. ..+.+|+++||......-.. ..+...+++++|+||.|.+.+.. ...+..++..
T Consensus 474 --l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I 550 (941)
T KOG0389|consen 474 --LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSI 550 (941)
T ss_pred --eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhccc
Confidence 6777778877655554432 23589999999766532222 22334668999999999987765 3344444433
Q ss_pred CCCCceEEEEEecCChH-HHH---------------------------------------------------------H-
Q 015454 203 LPPDLQVVLISATLPHE-ILE---------------------------------------------------------M- 223 (406)
Q Consensus 203 ~~~~~~~i~lSAT~~~~-~~~---------------------------------------------------------~- 223 (406)
+ ....+++|+||-.. +.+ .
T Consensus 551 -~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~ 628 (941)
T KOG0389|consen 551 -N-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRL 628 (941)
T ss_pred -c-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 2 34468899995100 000 0
Q ss_pred ----HHhcCCCCeEEEecC------------------------CccccCC--c--------------eEEE---------
Q 015454 224 ----TTKFMTDPVKILVKR------------------------DELTLEG--I--------------KQFF--------- 250 (406)
Q Consensus 224 ----~~~~~~~~~~~~~~~------------------------~~~~~~~--~--------------~~~~--------- 250 (406)
+..+......+.... ......+ + ..+|
T Consensus 629 K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ma 708 (941)
T KOG0389|consen 629 KSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMA 708 (941)
T ss_pred HHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHH
Confidence 000000000000000 0000000 0 0000
Q ss_pred -----------------------------------------EEec----ccccHHHHHHHHHhhcC--CcceEEEecchh
Q 015454 251 -----------------------------------------VAVE----REEWKFDTLCDLYDTLT--ITQAVIFCNTKR 283 (406)
Q Consensus 251 -----------------------------------------~~~~----~~~~~~~~l~~~~~~~~--~~k~lif~~~~~ 283 (406)
.... -...|...|..++.... +.|+|||.+...
T Consensus 709 k~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTq 788 (941)
T KOG0389|consen 709 KRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQ 788 (941)
T ss_pred HHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHH
Confidence 0000 01235666777775443 259999999999
Q ss_pred hHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCC-C-cEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhh
Q 015454 284 KVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT-T-RVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIG 361 (406)
Q Consensus 284 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~-~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~G 361 (406)
..+.+...|.-.++....+.|.+.-.+|..+++.|...+ + -+|+.|.+.+.|||+..+++||+++...++-.=.|+-.
T Consensus 789 mLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAED 868 (941)
T KOG0389|consen 789 MLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAED 868 (941)
T ss_pred HHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHH
Confidence 999999999999999999999999999999999997654 3 45678999999999999999999999999999999999
Q ss_pred hccCCCCceeEEEE--eccCcH
Q 015454 362 RSGRFGRKGVAINF--VKNDDI 381 (406)
Q Consensus 362 R~~R~~~~~~~~~~--~~~~~~ 381 (406)
|++|.|++.++.++ +....+
T Consensus 869 RcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 869 RCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred HHHhhCCcceeEEEEEEecCcH
Confidence 99999998776654 555543
No 130
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=6.9e-19 Score=169.14 Aligned_cols=315 Identities=17% Similarity=0.198 Sum_probs=205.9
Q ss_pred CCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCccee
Q 015454 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (406)
Q Consensus 52 ~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (406)
|. .+++.|.-.--.+ .+.-+..+.||+|||+++.+++...... |..+-+++|+.-|+.+-++++..+....+++
T Consensus 80 Gm-~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~---G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~ 153 (913)
T PRK13103 80 GM-RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALS---GKGVHVVTVNDYLARRDANWMRPLYEFLGLS 153 (913)
T ss_pred CC-CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHhcccCCE
Confidence 44 5666666443333 3457889999999999999888765544 4458999999999999999999999999999
Q ss_pred EEEEECCcchHHhHHHHhcCCCEEEechHHH-HHHHHccCC------CcCCcceeecchhhHHhccC-------------
Q 015454 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKTL------RTRAIKLLVLDESDEMLSRG------------- 191 (406)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~~~------~~~~~~~vV~DE~h~~~~~~------------- 191 (406)
+..+.++.+..++...+. ++|+++|..-| .++|..+.. -...+.++|+||+|.++=..
T Consensus 154 v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~ 231 (913)
T PRK13103 154 VGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAED 231 (913)
T ss_pred EEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCcc
Confidence 999887776655544443 89999998776 233333211 13778999999999853110
Q ss_pred ---cHHHHHHHHHhC-----------------------------------------------------------------
Q 015454 192 ---FKDQIYDVYRYL----------------------------------------------------------------- 203 (406)
Q Consensus 192 ---~~~~~~~~~~~~----------------------------------------------------------------- 203 (406)
....+..+...+
T Consensus 232 ~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~ 311 (913)
T PRK13103 232 SSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVY 311 (913)
T ss_pred chHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHH
Confidence 000011111100
Q ss_pred ---C-------------------------------------------------------------------CCceEEEEE
Q 015454 204 ---P-------------------------------------------------------------------PDLQVVLIS 213 (406)
Q Consensus 204 ---~-------------------------------------------------------------------~~~~~i~lS 213 (406)
. --.++.+||
T Consensus 312 ~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMT 391 (913)
T PRK13103 312 AGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMT 391 (913)
T ss_pred HHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCC
Confidence 0 003456666
Q ss_pred ecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHh-hc-CCcceEEEecchhhHHHHHHH
Q 015454 214 ATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-TL-TITQAVIFCNTKRKVDWLTEK 291 (406)
Q Consensus 214 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~k~lif~~~~~~~~~l~~~ 291 (406)
+|...+..++..-+....+.+............. ....+...|...+..-+. .+ .+.++||-+.|++..+.+++.
T Consensus 392 GTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d---~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~ 468 (913)
T PRK13103 392 GTADTEAFEFRQIYGLDVVVIPPNKPLARKDFND---LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNL 468 (913)
T ss_pred CCCHHHHHHHHHHhCCCEEECCCCCCcccccCCC---eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHH
Confidence 6665444433333222222111111111111111 112222335554444333 33 235899999999999999999
Q ss_pred HhcCCceEEEeecCCCHHHHHHHHHHHhcCC-CcEEEEcCcccCCCCCC-------------------------------
Q 015454 292 MRGYNFTVSSMHGDMPQKERDAIMGEFRSGT-TRVLITTDVWARGLDVQ------------------------------- 339 (406)
Q Consensus 292 l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~vli~t~~~~~G~d~~------------------------------- 339 (406)
|...+++..++++.....+ ..++. ..|+ ..|.|||+++++|-|+.
T Consensus 469 L~~~gi~h~VLNAk~~~~E-A~IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (913)
T PRK13103 469 LKKEGIEHKVLNAKYHEKE-AEIIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRH 545 (913)
T ss_pred HHHcCCcHHHhccccchhH-HHHHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHH
Confidence 9999999888887744333 23333 3454 46999999999999984
Q ss_pred ------CCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCc
Q 015454 340 ------QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDD 380 (406)
Q Consensus 340 ------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 380 (406)
+-=+||-...+.|..--.|..||+||.|.+|.+..|++-+|
T Consensus 546 e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 546 QQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 22378888889999999999999999999999998888654
No 131
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.83 E-value=1.9e-17 Score=156.90 Aligned_cols=116 Identities=11% Similarity=0.096 Sum_probs=84.5
Q ss_pred HHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhc----CCCcEEEEcCcccCCC
Q 015454 261 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS----GTTRVLITTDVWARGL 336 (406)
Q Consensus 261 ~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vli~t~~~~~G~ 336 (406)
+.+..++.... ++++|.+.|...++.+++.|...---...+.|..+ .+..++++|++ |...||++|..+.+|+
T Consensus 460 ~~~~~~~~~~~-G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 460 LSTAAILRKAQ-GGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred HHHHHHHHHcC-CCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 44455555443 68999999999999999999653222334445432 44667888876 4789999999999999
Q ss_pred CC--------C--CCCEEEEecCCCChh-------------------------hhHhhhhhccCCCCc--eeEEEEeccC
Q 015454 337 DV--------Q--QVSLVINYDLPNNRE-------------------------LYIHRIGRSGRFGRK--GVAINFVKND 379 (406)
Q Consensus 337 d~--------~--~~~~vi~~~~~~s~~-------------------------~~~Q~~GR~~R~~~~--~~~~~~~~~~ 379 (406)
|+ | .++.||+...|..+. .+.|-+||.-|...+ .-++.+++++
T Consensus 537 Dv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 537 DLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred ccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 99 3 488999988874332 257999999999777 5566666665
No 132
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3e-19 Score=165.44 Aligned_cols=304 Identities=19% Similarity=0.246 Sum_probs=189.7
Q ss_pred HhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhc---cCCCceeEEEEcCcHHHHHHHHHHHHH-hcc-CcceeEEEEE
Q 015454 62 RAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVD---TSSREVQALILSPTRELATQTEKVILA-IGD-FINIQAHACV 136 (406)
Q Consensus 62 ~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~---~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~-~~~~~~~~~~ 136 (406)
+....|.++.-+|++|.||||||...--.+..+=. ....++-+-|.-|++.-+..++++... ++. ...+....-+
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRf 342 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRF 342 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEe
Confidence 34455555666999999999999665444443321 122245677888999887777766543 322 1112222222
Q ss_pred CCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC-----cHHHHHHHHHhCC------C
Q 015454 137 GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----FKDQIYDVYRYLP------P 205 (406)
Q Consensus 137 ~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~-----~~~~~~~~~~~~~------~ 205 (406)
.++- .....|-++|.+.|++-+.+. +.+..+++||+||||.=+-.. .-..+..+..... .
T Consensus 343 d~ti--------~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~k 413 (1172)
T KOG0926|consen 343 DGTI--------GEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIK 413 (1172)
T ss_pred cccc--------CCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 2222 123689999999999887664 557889999999999732111 0111111111111 2
Q ss_pred CceEEEEEecCChHHHHHHHhcCCCC-eEEEecCCccccCCceEEEEEecccc---cHHHHHHHHHhhcCCcceEEEecc
Q 015454 206 DLQVVLISATLPHEILEMTTKFMTDP-VKILVKRDELTLEGIKQFFVAVEREE---WKFDTLCDLYDTLTITQAVIFCNT 281 (406)
Q Consensus 206 ~~~~i~lSAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~k~lif~~~ 281 (406)
..+.|+||||+.-....--+.++..+ -.+.++...++. ...+......+ ......+.+.++.+.+.+|||+.-
T Consensus 414 pLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPV---sIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTG 490 (1172)
T KOG0926|consen 414 PLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPV---SIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTG 490 (1172)
T ss_pred ceeEEEEeeeEEecccccCceecCCCCceeeeecccCce---EEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeC
Confidence 56899999998542221112222221 222222222221 11111111112 234444555667778899999999
Q ss_pred hhhHHHHHHHHhcCC---c-------------------------------------------------------------
Q 015454 282 KRKVDWLTEKMRGYN---F------------------------------------------------------------- 297 (406)
Q Consensus 282 ~~~~~~l~~~l~~~~---~------------------------------------------------------------- 297 (406)
..+++.+++.|++.- +
T Consensus 491 QqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~ 570 (1172)
T KOG0926|consen 491 QQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNA 570 (1172)
T ss_pred hHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhc
Confidence 999999998886530 0
Q ss_pred -----------------------------------eEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCC
Q 015454 298 -----------------------------------TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVS 342 (406)
Q Consensus 298 -----------------------------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 342 (406)
-+..+++-++.+...+++..--.|..-++|+|++++.++.+|+++
T Consensus 571 ~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIk 650 (1172)
T KOG0926|consen 571 LADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIK 650 (1172)
T ss_pred cccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCee
Confidence 055666777777777777777777777999999999999999999
Q ss_pred EEEEecCC------------------CChhhhHhhhhhccCCCCceeEEEEecc
Q 015454 343 LVINYDLP------------------NNRELYIHRIGRSGRFGRKGVAINFVKN 378 (406)
Q Consensus 343 ~vi~~~~~------------------~s~~~~~Q~~GR~~R~~~~~~~~~~~~~ 378 (406)
.||..+.. .|..+--||.||+||.| +|.|+.+|+.
T Consensus 651 YVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 651 YVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred EEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 99986642 24445569999999997 8999988874
No 133
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.82 E-value=2e-17 Score=166.84 Aligned_cols=121 Identities=11% Similarity=0.113 Sum_probs=89.4
Q ss_pred CCcceEEEecchhhHHHHHHHHhcCCc--eEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCC--CCEEEE
Q 015454 271 TITQAVIFCNTKRKVDWLTEKMRGYNF--TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ--VSLVIN 346 (406)
Q Consensus 271 ~~~k~lif~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~--~~~vi~ 346 (406)
..+++||+++|.+..+.+++.|..... ....+.-+++...|..++++|++++..||++|.++.+|+|+|+ +++||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 347899999999999999999975422 1223333444456789999999998899999999999999996 588999
Q ss_pred ecCCCC-h-----------------------------hhhHhhhhhccCCCCceeEEEEeccC--cHHHHHHHHHHH
Q 015454 347 YDLPNN-R-----------------------------ELYIHRIGRSGRFGRKGVAINFVKND--DIKILRDIEQYY 391 (406)
Q Consensus 347 ~~~~~s-~-----------------------------~~~~Q~~GR~~R~~~~~~~~~~~~~~--~~~~~~~~~~~~ 391 (406)
.+.|.. + ..+.|.+||+-|...+.-++++++++ ...+=+.+.+.+
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhC
Confidence 887752 2 12469999999998886677777765 333444444444
No 134
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=4.1e-19 Score=161.94 Aligned_cols=303 Identities=16% Similarity=0.232 Sum_probs=194.8
Q ss_pred hHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHH-hccCcceeEEEE
Q 015454 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAHAC 135 (406)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~~ 135 (406)
...+.+.+..+-+++-+++.+.||||||....-.++..=+.. .+.+-..-|++.-+..+++++.. .+..++-.++.-
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~--~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYs 435 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD--NGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYS 435 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc--CCeeeecCchHHHHHHHHHHHHHHhCCccccccceE
Confidence 455667777777788899999999999976655554432222 22455666888888888777654 322222222111
Q ss_pred --ECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhcc-C-cHHHHHHHHHhCCCCceEEE
Q 015454 136 --VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-G-FKDQIYDVYRYLPPDLQVVL 211 (406)
Q Consensus 136 --~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~-~-~~~~~~~~~~~~~~~~~~i~ 211 (406)
+.+.. .....|-++|.+.|++-.... -.+..+++||+||||+-.-. . ....+..++.. +.+.++|.
T Consensus 436 IRFEdvT--------~~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKliV 505 (1042)
T KOG0924|consen 436 IRFEDVT--------SEDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKLIV 505 (1042)
T ss_pred EEeeecC--------CCceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceEEE
Confidence 11111 112467789998887543322 23566899999999974321 1 11122222222 35788999
Q ss_pred EEecCChHHHHHHHhcCC-CCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhc---CCcceEEEecchhhHHH
Q 015454 212 ISATLPHEILEMTTKFMT-DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL---TITQAVIFCNTKRKVDW 287 (406)
Q Consensus 212 lSAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~k~lif~~~~~~~~~ 287 (406)
.|||+... ....+++ -|... .....+ .+...+...+..+..-..+...+.-+ +.+.+|||..-.+..+.
T Consensus 506 tSATm~a~---kf~nfFgn~p~f~-IpGRTy---PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~ 578 (1042)
T KOG0924|consen 506 TSATMDAQ---KFSNFFGNCPQFT-IPGRTY---PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIEC 578 (1042)
T ss_pred eeccccHH---HHHHHhCCCceee-ecCCcc---ceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhH
Confidence 99998753 2333444 33332 222221 22333344444443444444444433 34679999987765544
Q ss_pred ----HHHHHhc------CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecC--------
Q 015454 288 ----LTEKMRG------YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL-------- 349 (406)
Q Consensus 288 ----l~~~l~~------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~-------- 349 (406)
+.+.|.. .++.+..+++.++..-..+++..-..|..+++|+|++++.++.+|++.+||..+.
T Consensus 579 t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~ 658 (1042)
T KOG0924|consen 579 TCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNP 658 (1042)
T ss_pred HHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeeccc
Confidence 4444432 2567999999999999999998888888999999999999999999999997553
Q ss_pred ----------CCChhhhHhhhhhccCCCCceeEEEEeccC
Q 015454 350 ----------PNNRELYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 350 ----------~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
|.|-..--||.||+||.| +|.|+.++..+
T Consensus 659 ~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 659 RIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 456677789999999996 89999998874
No 135
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=8e-19 Score=157.11 Aligned_cols=350 Identities=13% Similarity=0.096 Sum_probs=233.5
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccC---
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF--- 127 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~--- 127 (406)
......+.+|.++++.+.+|++.++.-.+.+||++++.......+... .....++..|+.+++++..+.+.-....
T Consensus 282 ~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~ 360 (1034)
T KOG4150|consen 282 NTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC-HATNSLLPSEMVEHLRNGSKGQVVHVEVIKA 360 (1034)
T ss_pred ccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC-cccceecchhHHHHhhccCCceEEEEEehhh
Confidence 334467899999999999999999999999999999887766554332 3445799999999887765543211100
Q ss_pred cceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCC----cCCcceeecchhhHHhccC---cHHHHHHHH
Q 015454 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLR----TRAIKLLVLDESDEMLSRG---FKDQIYDVY 200 (406)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~----~~~~~~vV~DE~h~~~~~~---~~~~~~~~~ 200 (406)
..--+...+.+....+.......+.+++++.|+........+... .-...++++||+|.+.... ...+++++.
T Consensus 361 ~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~ 440 (1034)
T KOG4150|consen 361 RKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALS 440 (1034)
T ss_pred hhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHH
Confidence 001122223333333444445567889999998887654332222 2234578999999765331 122333332
Q ss_pred HhC-----CCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEeccc--------ccHHHHHHHHH
Q 015454 201 RYL-----PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVERE--------EWKFDTLCDLY 267 (406)
Q Consensus 201 ~~~-----~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~ 267 (406)
+.. ..+.+++-.++|+.....-+..-+..+...+.... -.+.+.++++..-+.. +.+......++
T Consensus 441 ~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~D--GSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~ 518 (1034)
T KOG4150|consen 441 DLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTID--GSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLF 518 (1034)
T ss_pred HHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEec--CCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHH
Confidence 222 24678899999987765544433332333333222 2223334444333221 22333344444
Q ss_pred hhc--CCcceEEEecchhhHHHHHHHHhc----CCc----eEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCC
Q 015454 268 DTL--TITQAVIFCNTKRKVDWLTEKMRG----YNF----TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLD 337 (406)
Q Consensus 268 ~~~--~~~k~lif~~~~~~~~~l~~~l~~----~~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 337 (406)
.+. .+-+++-||.+++.|+.+....+. .+. .+..|.|+...++|..+..+.--|+..-+|+|++++-|+|
T Consensus 519 ~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGID 598 (1034)
T KOG4150|consen 519 AEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGID 598 (1034)
T ss_pred HHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccc
Confidence 322 225899999999998866554432 221 3556789999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEec--cCcHHHHHHHHHHHccccccCCcccc
Q 015454 338 VQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK--NDDIKILRDIEQYYSTQIDEMPMNVA 403 (406)
Q Consensus 338 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (406)
+..++.|++.+.|.|.+.+-|..||+||.++++-.+++.. +-|..++.+-...+..+..++..++.
T Consensus 599 IG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~ 666 (1034)
T KOG4150|consen 599 IGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQ 666 (1034)
T ss_pred cccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecc
Confidence 9999999999999999999999999999999976655544 55778888888888888888776653
No 136
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.81 E-value=7.1e-19 Score=137.02 Aligned_cols=118 Identities=43% Similarity=0.722 Sum_probs=109.4
Q ss_pred cHHHHHHHHHhhcC--CcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCC
Q 015454 258 WKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARG 335 (406)
Q Consensus 258 ~~~~~l~~~~~~~~--~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 335 (406)
.+...+..++.... .+++||||++...++.+++.|.+.+..+..+||+++..+|..+++.|.++...+|++|+.+++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 57777777777664 6799999999999999999999888899999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEE
Q 015454 336 LDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 375 (406)
Q Consensus 336 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~ 375 (406)
+|+|.+++|++++.+++...+.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887764
No 137
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.79 E-value=2.5e-18 Score=153.54 Aligned_cols=279 Identities=18% Similarity=0.219 Sum_probs=179.1
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCC
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGV 152 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (406)
++-+|||.||||.-++--+. . ....++.-|.+-|+.++++++++.+...++. .|....... .. .+.+
T Consensus 194 i~H~GPTNSGKTy~ALqrl~----~---aksGvycGPLrLLA~EV~~r~na~gipCdL~----TGeE~~~~~-~~-~~~a 260 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRALQRLK----S---AKSGVYCGPLRLLAHEVYDRLNALGIPCDLL----TGEERRFVL-DN-GNPA 260 (700)
T ss_pred EEEeCCCCCchhHHHHHHHh----h---hccceecchHHHHHHHHHHHhhhcCCCcccc----ccceeeecC-CC-CCcc
Confidence 67789999999976544332 2 2346899999999999999999877544432 221111000 00 1225
Q ss_pred CEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHH-HHHHhCCCCceEEEEEecCChHHHHHHHhcCC--
Q 015454 153 HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY-DVYRYLPPDLQVVLISATLPHEILEMTTKFMT-- 229 (406)
Q Consensus 153 ~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~-~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~-- 229 (406)
..+-+|-++.. -...+++.|+||++.+.+.+.+-.+. +++.......+.++ .+...+....++.
T Consensus 261 ~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV~~i~k~T 327 (700)
T KOG0953|consen 261 QHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLVRKILKMT 327 (700)
T ss_pred cceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHHHHHHhhc
Confidence 56666765543 12347899999999998776554443 33333333444333 2333444443332
Q ss_pred -CCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCce-EEEeecCCC
Q 015454 230 -DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFT-VSSMHGDMP 307 (406)
Q Consensus 230 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 307 (406)
+...+ ..|....... ..+.+..-+....++-++ .|-|++....+...+.+.|.. +.+++|.++
T Consensus 328 Gd~vev-------------~~YeRl~pL~-v~~~~~~sl~nlk~GDCv-V~FSkk~I~~~k~kIE~~g~~k~aVIYGsLP 392 (700)
T KOG0953|consen 328 GDDVEV-------------REYERLSPLV-VEETALGSLSNLKPGDCV-VAFSKKDIFTVKKKIEKAGNHKCAVIYGSLP 392 (700)
T ss_pred CCeeEE-------------EeecccCcce-ehhhhhhhhccCCCCCeE-EEeehhhHHHHHHHHHHhcCcceEEEecCCC
Confidence 22111 1122222211 122334444555555564 466777888899999888765 999999999
Q ss_pred HHHHHHHHHHHhc--CCCcEEEEcCcccCCCCCCCCCEEEEecCC---------CChhhhHhhhhhccCCCCc---eeEE
Q 015454 308 QKERDAIMGEFRS--GTTRVLITTDVWARGLDVQQVSLVINYDLP---------NNRELYIHRIGRSGRFGRK---GVAI 373 (406)
Q Consensus 308 ~~~r~~~~~~f~~--~~~~vli~t~~~~~G~d~~~~~~vi~~~~~---------~s~~~~~Q~~GR~~R~~~~---~~~~ 373 (406)
++.|.+--..|++ ++++|||||+++++|+|+ +++.||+++.. .+.++..|..|||||.|.. |.+.
T Consensus 393 PeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vT 471 (700)
T KOG0953|consen 393 PETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVT 471 (700)
T ss_pred CchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEE
Confidence 9999999999987 899999999999999999 89999998764 5678899999999999643 6665
Q ss_pred EEeccCcHHHHHHHHHHHcccccc
Q 015454 374 NFVKNDDIKILRDIEQYYSTQIDE 397 (406)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
.+..+ | +..+.+.+++..+.
T Consensus 472 tl~~e-D---L~~L~~~l~~p~ep 491 (700)
T KOG0953|consen 472 TLHSE-D---LKLLKRILKRPVEP 491 (700)
T ss_pred EeeHh-h---HHHHHHHHhCCchH
Confidence 55443 3 34445555544443
No 138
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.79 E-value=8.4e-18 Score=132.96 Aligned_cols=144 Identities=35% Similarity=0.523 Sum_probs=112.3
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhc
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (406)
+++++.+|||+|||..++..+...... ....+++|++|++.++.|+.+.+...... +..+..+.+.............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcC
Confidence 468999999999999998888877654 23567999999999999999999887754 5666677766665555555566
Q ss_pred CCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecC
Q 015454 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (406)
Q Consensus 151 ~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 216 (406)
..+++++|++.+.............++++|+||+|.+....................+++++||||
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999999988777655567789999999999987765543323344445678899999996
No 139
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=2.4e-17 Score=145.15 Aligned_cols=321 Identities=16% Similarity=0.243 Sum_probs=197.0
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCc
Q 015454 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~ 110 (406)
....|.+.+.+....+.|++..---.+.++.+....+..++-+++.|.||||||...--+.+....... ..+.-.-|+
T Consensus 23 ~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQpr 100 (699)
T KOG0925|consen 23 AINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQPR 100 (699)
T ss_pred hcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--cceeecCch
Confidence 367799999999999888775321234455566666677788999999999999766555554433322 335666688
Q ss_pred HHHHHHHHHHHHH-----hccCcceeEE--EEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecch
Q 015454 111 RELATQTEKVILA-----IGDFINIQAH--ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDE 183 (406)
Q Consensus 111 ~~l~~q~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE 183 (406)
+.-+.+++.+... +++..+..+. .+.+... -+-.+|.++|++-.-.. -.+..+++||+||
T Consensus 101 rvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T------------~Lky~tDgmLlrEams~-p~l~~y~viiLDe 167 (699)
T KOG0925|consen 101 RVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNT------------LLKYCTDGMLLREAMSD-PLLGRYGVIILDE 167 (699)
T ss_pred HHHHHHHHHHHHHHhccccchhccccccccccCChhH------------HHHHhcchHHHHHHhhC-cccccccEEEech
Confidence 8777777766543 2222222211 1111000 01134555554432222 2357799999999
Q ss_pred hhHHh--ccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccH--
Q 015454 184 SDEML--SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK-- 259 (406)
Q Consensus 184 ~h~~~--~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 259 (406)
+|+-. ..-....+..+.... +..+++.||||+... .+..++.+.-.+.+.. ...++.+|..-...+..
T Consensus 168 ahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg----~~PvEi~Yt~e~erDylEa 239 (699)
T KOG0925|consen 168 AHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNAPLLAVPG----THPVEIFYTPEPERDYLEA 239 (699)
T ss_pred hhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCCCeeecCC----CCceEEEecCCCChhHHHH
Confidence 99732 122233445555554 589999999998753 3334444443333222 22233344333333322
Q ss_pred -HHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcC---------CceEEEeecCCCHHHHHHHHHHHh---cC--CCc
Q 015454 260 -FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY---------NFTVSSMHGDMPQKERDAIMGEFR---SG--TTR 324 (406)
Q Consensus 260 -~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~---~~--~~~ 324 (406)
...+.++......+-+|+|....++.+..++.+... ...+..+| +.+...+++-.. +| ..+
T Consensus 240 airtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~Rk 315 (699)
T KOG0925|consen 240 AIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRK 315 (699)
T ss_pred HHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccce
Confidence 233333444445678999999999988888877632 23566666 223333332221 12 347
Q ss_pred EEEEcCcccCCCCCCCCCEEEEecC------------------CCChhhhHhhhhhccCCCCceeEEEEeccC
Q 015454 325 VLITTDVWARGLDVQQVSLVINYDL------------------PNNRELYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 325 vli~t~~~~~G~d~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
|+|+|++++..+.++++.+||.-+. |.|..+-.||.||+||. ++|+|+.++.++
T Consensus 316 vVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 316 VVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 9999999999999999999987543 56778889999999998 689999999875
No 140
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.78 E-value=2.5e-18 Score=142.33 Aligned_cols=152 Identities=19% Similarity=0.175 Sum_probs=103.4
Q ss_pred CChHHHHHhHHhhhc-------CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccC
Q 015454 55 KPSAIQQRAVMPIIK-------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~-------~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (406)
.|+++|.+++..+.+ .+++++.+|||||||.+++..+..... +++|++|+..|+.|+.+.+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 589999999998884 578999999999999988865555543 7999999999999999999766533
Q ss_pred cceeEEE-----------EECCcchHHhHHHHhcCCCEEEechHHHHHHHHccC-----------CCcCCcceeecchhh
Q 015454 128 INIQAHA-----------CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT-----------LRTRAIKLLVLDESD 185 (406)
Q Consensus 128 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~-----------~~~~~~~~vV~DE~h 185 (406)
....... ..................+++++|++.+........ .....+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 2211111 011111112223334568899999999987765321 223567899999999
Q ss_pred HHhccCcHHHHHHHHHhCCCCceEEEEEecCC
Q 015454 186 EMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 217 (406)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 217 (406)
++..... +..+.. .+...+++|||||.
T Consensus 157 ~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred hcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 8865541 333433 45667999999985
No 141
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=3.1e-17 Score=156.30 Aligned_cols=315 Identities=16% Similarity=0.189 Sum_probs=207.5
Q ss_pred CCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCccee
Q 015454 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (406)
Q Consensus 52 ~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (406)
|. .|++.|.-.--.+..| -+..+.||-|||+++.+|+.-.... |..+-+++...-|+..-++++..+....+++
T Consensus 76 G~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~---GkgVhVVTvNdYLA~RDae~mg~vy~fLGLs 149 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT---GKGVIVSTVNEYLAERDAEEMGKVFNFLGLS 149 (925)
T ss_pred CC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc---CCceEEEecchhhhhhhHHHHHHHHHHhCCc
Confidence 55 6777777665444444 5899999999999998887644333 3347888889999999999999999999999
Q ss_pred EEEEECCcchHHhHHHHhcCCCEEEechHHHH-HHHHccCC------CcCCcceeecchhhHHhccC-------------
Q 015454 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRKTL------RTRAIKLLVLDESDEMLSRG------------- 191 (406)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~-~~l~~~~~------~~~~~~~vV~DE~h~~~~~~------------- 191 (406)
++....+....++...+ .++|..+|...|- ++++.+.. -.+.+.+.|+||++.++-..
T Consensus 150 vG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~ 227 (925)
T PRK12903 150 VGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSN 227 (925)
T ss_pred eeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCcc
Confidence 99887766655544443 4899999987764 44544321 23668899999999853110
Q ss_pred ---cHHHHHHHHHhCCC---------------------------------------------------------------
Q 015454 192 ---FKDQIYDVYRYLPP--------------------------------------------------------------- 205 (406)
Q Consensus 192 ---~~~~~~~~~~~~~~--------------------------------------------------------------- 205 (406)
....+..+...+.+
T Consensus 228 ~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~d 307 (925)
T PRK12903 228 DSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRD 307 (925)
T ss_pred chHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEEC
Confidence 11111122221110
Q ss_pred -----------------------------------------------------CceEEEEEecCChHHHHHHHhcCCCCe
Q 015454 206 -----------------------------------------------------DLQVVLISATLPHEILEMTTKFMTDPV 232 (406)
Q Consensus 206 -----------------------------------------------------~~~~i~lSAT~~~~~~~~~~~~~~~~~ 232 (406)
-.++.+||+|...+..++..-+....+
T Consensus 308 g~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv 387 (925)
T PRK12903 308 GKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVN 387 (925)
T ss_pred CEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEE
Confidence 035677777765554444433322222
Q ss_pred EEEecCCccccCCceEEEEEecccccHHHHHHHHHh-hc-CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHH
Q 015454 233 KILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-TL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKE 310 (406)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 310 (406)
.+............. ........+...+..-+. .+ .+.++||.|.|++..+.+++.|.+.|++..++++.....+
T Consensus 388 ~IPTnkP~~R~D~~d---~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~E 464 (925)
T PRK12903 388 VVPTNKPVIRKDEPD---SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNARE 464 (925)
T ss_pred ECCCCCCeeeeeCCC---cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhH
Confidence 211111111111111 111223335554444333 33 3358999999999999999999999999999998744332
Q ss_pred HHHHHHHHhcCC-CcEEEEcCcccCCCCCCCCC--------EEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCc
Q 015454 311 RDAIMGEFRSGT-TRVLITTDVWARGLDVQQVS--------LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDD 380 (406)
Q Consensus 311 r~~~~~~f~~~~-~~vli~t~~~~~G~d~~~~~--------~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 380 (406)
..++. ..|. ..|.|||+++++|.|+.--. +||....+.|..--.|..||+||.|.+|.+..|++-+|
T Consensus 465 -A~IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 465 -AEIIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred -HHHHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 23332 3564 47899999999999985222 88888889999889999999999999999888887654
No 142
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.77 E-value=6.2e-17 Score=148.36 Aligned_cols=118 Identities=20% Similarity=0.275 Sum_probs=98.3
Q ss_pred CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhc--CCCcEEE-EcCcccCCCCCCCCCEEEEe
Q 015454 271 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS--GTTRVLI-TTDVWARGLDVQQVSLVINY 347 (406)
Q Consensus 271 ~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vli-~t~~~~~G~d~~~~~~vi~~ 347 (406)
...+++|..+.......+..+|.+.|+....+||.....+|..+++.|.. |..+|++ .=.+.+.|+|+-..+|+|.+
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 33688888888888899999999999999999999999999999999964 4455655 45778899999999999999
Q ss_pred cCCCChhhhHhhhhhccCCCCceeEEEE---eccCcHHHHHHHH
Q 015454 348 DLPNNRELYIHRIGRSGRFGRKGVAINF---VKNDDIKILRDIE 388 (406)
Q Consensus 348 ~~~~s~~~~~Q~~GR~~R~~~~~~~~~~---~~~~~~~~~~~~~ 388 (406)
+..|++.--.|...|.-|+|++..+++. +...-+..+..++
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQ 868 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQ 868 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHH
Confidence 9999999999999999999998776643 3344445555554
No 143
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.76 E-value=2.1e-18 Score=120.76 Aligned_cols=78 Identities=47% Similarity=0.771 Sum_probs=75.4
Q ss_pred HHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCC
Q 015454 290 EKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 367 (406)
Q Consensus 290 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 367 (406)
+.|+..++.+..+||+++..+|..+++.|++++..|||+|+++++|+|+|.+++|+++++|++...|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999999986
No 144
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.75 E-value=2.1e-16 Score=151.53 Aligned_cols=276 Identities=17% Similarity=0.194 Sum_probs=174.8
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|+ .|++.|.-..-.+ .+.-+..+.||.|||+++.+|+.-.... |..+-|++++..|+.+-++++..+....++
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~---G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL 146 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT---GKGVHIVTVNDYLAKRDQEWMGQIYRFLGL 146 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc---CCceEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence 355 5777776654433 4558999999999999999888533332 445899999999999999999999999999
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHHH-HHHHccCC------CcCCcceeecchhhHHhccC------------
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRKTL------RTRAIKLLVLDESDEMLSRG------------ 191 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~-~~l~~~~~------~~~~~~~vV~DE~h~~~~~~------------ 191 (406)
+++...++.+..++.... .++|..+|...|- ++++++.. ..+.+.+.|+||++.++=..
T Consensus 147 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~~ 224 (870)
T CHL00122 147 TVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSK 224 (870)
T ss_pred ceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCCc
Confidence 999887777766554443 4799999987553 34443321 23668899999999853110
Q ss_pred ----cHHHHHHHHHhCCC--------------------------------------------------------------
Q 015454 192 ----FKDQIYDVYRYLPP-------------------------------------------------------------- 205 (406)
Q Consensus 192 ----~~~~~~~~~~~~~~-------------------------------------------------------------- 205 (406)
.......+.+.+..
T Consensus 225 ~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~ 304 (870)
T CHL00122 225 TNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVR 304 (870)
T ss_pred cchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 00011111111110
Q ss_pred ------------------------------------------------------CceEEEEEecCChHHHHHHHhcCCCC
Q 015454 206 ------------------------------------------------------DLQVVLISATLPHEILEMTTKFMTDP 231 (406)
Q Consensus 206 ------------------------------------------------------~~~~i~lSAT~~~~~~~~~~~~~~~~ 231 (406)
-.++.+||+|...+..++..-+-...
T Consensus 305 dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~v 384 (870)
T CHL00122 305 NNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEV 384 (870)
T ss_pred CCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCE
Confidence 03678888887665444433333222
Q ss_pred eEEEecCCccccCCceEEEEEecccccHHHHHH-HHHhhcCC-cceEEEecchhhHHHHHHHHhcCCceEEEeecCCCH-
Q 015454 232 VKILVKRDELTLEGIKQFFVAVEREEWKFDTLC-DLYDTLTI-TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ- 308 (406)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~-~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~- 308 (406)
+.+. ...+......-.....+...+...+. .+.+.+.. .++||-|.|++..+.+++.|...|++..++++....
T Consensus 385 v~IP---tnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~ 461 (870)
T CHL00122 385 VCIP---THRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENV 461 (870)
T ss_pred EECC---CCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccc
Confidence 2221 11111111111112223333444333 33444333 489999999999999999999999999999987422
Q ss_pred HHHHHHHHHHhcCC-CcEEEEcCcccCCCCCC
Q 015454 309 KERDAIMGEFRSGT-TRVLITTDVWARGLDVQ 339 (406)
Q Consensus 309 ~~r~~~~~~f~~~~-~~vli~t~~~~~G~d~~ 339 (406)
..-..++.+ .|+ ..|.|||+++++|.|+.
T Consensus 462 ~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 462 RRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred hhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 222344443 444 46899999999999973
No 145
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.75 E-value=6.3e-16 Score=152.47 Aligned_cols=135 Identities=13% Similarity=0.166 Sum_probs=95.2
Q ss_pred HHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCce-EEEeecCCCHHHHHHHHHHHhcCCC-cEEEEcCcccCCCC
Q 015454 260 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFT-VSSMHGDMPQKERDAIMGEFRSGTT-RVLITTDVWARGLD 337 (406)
Q Consensus 260 ~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~-~vli~t~~~~~G~d 337 (406)
...+..+++..+ +++|||++|.+.++.+.+.+...... ....+|.. .+...++.|..+.- -++|++..+.+|+|
T Consensus 468 ~~~i~~~~~~~~-~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD 543 (654)
T COG1199 468 AAYLREILKASP-GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVD 543 (654)
T ss_pred HHHHHHHHhhcC-CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCccc
Confidence 344555555555 58999999999999999999876653 33444443 34477888876655 89999999999999
Q ss_pred CCC--CCEEEEecCCCC------------------------------hhhhHhhhhhccCCCCceeEEEEeccCcH--HH
Q 015454 338 VQQ--VSLVINYDLPNN------------------------------RELYIHRIGRSGRFGRKGVAINFVKNDDI--KI 383 (406)
Q Consensus 338 ~~~--~~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~--~~ 383 (406)
+|+ .+.|++.+.|.. .....|.+||+-|...+.-++++++.+=. .+
T Consensus 544 ~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y 623 (654)
T COG1199 544 FPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRY 623 (654)
T ss_pred CCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhH
Confidence 995 578999888753 22367999999998777666666666522 24
Q ss_pred HHHHHHHHccccccC
Q 015454 384 LRDIEQYYSTQIDEM 398 (406)
Q Consensus 384 ~~~~~~~~~~~~~~~ 398 (406)
-+.+.+.+.......
T Consensus 624 ~~~l~~~l~~~~~~~ 638 (654)
T COG1199 624 GKLLLDSLPPFPKSK 638 (654)
T ss_pred HHHHHHhCCCCcccc
Confidence 455555555444433
No 146
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.75 E-value=2e-16 Score=153.70 Aligned_cols=324 Identities=17% Similarity=0.157 Sum_probs=187.6
Q ss_pred ChHHHHHhHHhhhc--------CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccC
Q 015454 56 PSAIQQRAVMPIIK--------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (406)
Q Consensus 56 l~~~Q~~~~~~i~~--------~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (406)
-..||.+|+..+.. |--++-.|.||+|||++=.- +++.+.....+.+..|....|.|--|+-+.+++-...
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L 487 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNL 487 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCCCCCceEEEEccccceeccchHHHHHhcCC
Confidence 46799999987764 22367889999999987766 5555666667778888888888888877776654332
Q ss_pred cceeEEEEECCcchH-------------------------------------------HhHHHHh--------cCCCEEE
Q 015454 128 INIQAHACVGGKSVG-------------------------------------------EDIRKLE--------HGVHVVS 156 (406)
Q Consensus 128 ~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~--------~~~~iii 156 (406)
.+-....+.|+.... .-...+. -...++|
T Consensus 488 ~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V 567 (1110)
T TIGR02562 488 SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLV 567 (1110)
T ss_pred CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEE
Confidence 222223333321110 0000000 1157999
Q ss_pred echHHHHHHHHcc---CCCc----CCcceeecchhhHHhccCcHHHHHHHHHhC-CCCceEEEEEecCChHHHHHHHh--
Q 015454 157 GTPGRVCDMIKRK---TLRT----RAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTK-- 226 (406)
Q Consensus 157 ~T~~~l~~~l~~~---~~~~----~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~~~~-- 226 (406)
+|++.++...... .... -.-+.||+||+|.+....+.. +..++... .-+.++++||||+|+.+...+..
T Consensus 568 ~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~-L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~~Ay 646 (1110)
T TIGR02562 568 CTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPA-LLRLVQLAGLLGSRVLLSSATLPPALVKTLFRAY 646 (1110)
T ss_pred ecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHH-HHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHH
Confidence 9999998766321 1111 123579999999876554433 33333321 23567999999999887664432
Q ss_pred ---------cCC---CCeEEEecCCcc-cc----------------------------CCce--EEEEEecccc----cH
Q 015454 227 ---------FMT---DPVKILVKRDEL-TL----------------------------EGIK--QFFVAVEREE----WK 259 (406)
Q Consensus 227 ---------~~~---~~~~~~~~~~~~-~~----------------------------~~~~--~~~~~~~~~~----~~ 259 (406)
..+ .+..+.+...+. .. .... -....++... ..
T Consensus 647 ~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~~~~ 726 (1110)
T TIGR02562 647 EAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRENEST 726 (1110)
T ss_pred HHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccchhHH
Confidence 112 222222221110 00 0000 0111122211 11
Q ss_pred HHHHHHHH--------hhc----C-C-cc---eEEEecchhhHHHHHHHHhcC------CceEEEeecCCCHHHHHHHHH
Q 015454 260 FDTLCDLY--------DTL----T-I-TQ---AVIFCNTKRKVDWLTEKMRGY------NFTVSSMHGDMPQKERDAIMG 316 (406)
Q Consensus 260 ~~~l~~~~--------~~~----~-~-~k---~lif~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~ 316 (406)
...+...+ ..+ + . ++ .+|-+++++.+-.++..|... .+.+.+||+......|..+++
T Consensus 727 ~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~ 806 (1110)
T TIGR02562 727 YLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIER 806 (1110)
T ss_pred HHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHH
Confidence 11111111 111 1 1 22 478888877776666666432 345888999998877766654
Q ss_pred HH----------------------hc----CCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCc-
Q 015454 317 EF----------------------RS----GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK- 369 (406)
Q Consensus 317 ~f----------------------~~----~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~- 369 (406)
.. .+ +...|+|+|++.+.|+|+ +.+++|. .+.+....+|++||+.|.+..
T Consensus 807 ~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 807 RLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred HHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcccccccCC
Confidence 43 11 356899999999999999 5666654 367888999999999998754
Q ss_pred -eeEEEEeccCcHHHH
Q 015454 370 -GVAINFVKNDDIKIL 384 (406)
Q Consensus 370 -~~~~~~~~~~~~~~~ 384 (406)
+...+++...+.+.+
T Consensus 884 ~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 884 VQQPNIVILQWNYRYL 899 (1110)
T ss_pred CCCCcEEEeHhHHHHh
Confidence 333344445555554
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.74 E-value=7.6e-15 Score=143.68 Aligned_cols=112 Identities=18% Similarity=0.313 Sum_probs=82.2
Q ss_pred HHHHHHhhcCCcceEEEecchhhHHHHHHHHhcC-CceEEEeecCCCHHHHHHHHHHHh----cCCCcEEEEcCcccCCC
Q 015454 262 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY-NFTVSSMHGDMPQKERDAIMGEFR----SGTTRVLITTDVWARGL 336 (406)
Q Consensus 262 ~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~vli~t~~~~~G~ 336 (406)
.+..++. ..++++|+++|.+..+.+++.|... +.. ....|. ..+..+++.|+ .++..||++|..+.+||
T Consensus 526 ~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGV 599 (697)
T PRK11747 526 FLPELLE--KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGL 599 (697)
T ss_pred HHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccc
Confidence 3444445 3356899999999999999988642 333 333443 24667776676 46788999999999999
Q ss_pred CCCC--CCEEEEecCCCC-h-----------------------------hhhHhhhhhccCCCCceeEEEEeccC
Q 015454 337 DVQQ--VSLVINYDLPNN-R-----------------------------ELYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 337 d~~~--~~~vi~~~~~~s-~-----------------------------~~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
|+|+ +++||+.+.|.. + ..+.|.+||.-|...+.-++++++++
T Consensus 600 D~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 600 DLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred cCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 9996 789999887742 1 12469999999998776677777776
No 148
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.72 E-value=2.8e-15 Score=132.49 Aligned_cols=109 Identities=19% Similarity=0.294 Sum_probs=94.8
Q ss_pred cceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcC-CCcEEEE-cCcccCCCCCCCCCEEEEecCC
Q 015454 273 TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSG-TTRVLIT-TDVWARGLDVQQVSLVINYDLP 350 (406)
Q Consensus 273 ~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~-t~~~~~G~d~~~~~~vi~~~~~ 350 (406)
-|.|||.+.....+.+.=.|.+.|+.++.+-|+|++..|+..++.|++. +++|++. -.+.+..+|+..+++|++.++.
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 4789999999999988889999999999999999999999999999865 5566554 4788888999999999999999
Q ss_pred CChhhhHhhhhhccCCCCc--eeEEEEeccCcH
Q 015454 351 NNRELYIHRIGRSGRFGRK--GVAINFVKNDDI 381 (406)
Q Consensus 351 ~s~~~~~Q~~GR~~R~~~~--~~~~~~~~~~~~ 381 (406)
|++..-.|...|.+|.|+. -.++.|+-++..
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 9999999999999999976 456666666544
No 149
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=5.4e-15 Score=145.96 Aligned_cols=133 Identities=13% Similarity=0.186 Sum_probs=90.9
Q ss_pred HHHhhcCCcceEEEecchhhHHHHHHHHhcCCc------eEEEeecCCCHHHHHHHHHHHhc----CCCcEEEEc--Ccc
Q 015454 265 DLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNF------TVSSMHGDMPQKERDAIMGEFRS----GTTRVLITT--DVW 332 (406)
Q Consensus 265 ~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~------~~~~~~~~~~~~~r~~~~~~f~~----~~~~vli~t--~~~ 332 (406)
.+.+.. ++.+|||++|....+.+.+.+...+. ...++...-+..++..+++.|+. ++..||+++ ..+
T Consensus 516 ~~~~~~-pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~ 594 (705)
T TIGR00604 516 EFSKII-PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKV 594 (705)
T ss_pred HHhhcC-CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCcc
Confidence 333433 37899999999999999888875432 01222222223577889999964 456799998 789
Q ss_pred cCCCCCCC--CCEEEEecCCC-Ch------------------------------hhhHhhhhhccCCCCceeEEEEeccC
Q 015454 333 ARGLDVQQ--VSLVINYDLPN-NR------------------------------ELYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 333 ~~G~d~~~--~~~vi~~~~~~-s~------------------------------~~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
++|+|+++ ++.||+++.|. ++ ....|.+||+-|..++--++++++.+
T Consensus 595 sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~R 674 (705)
T TIGR00604 595 SEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDKR 674 (705)
T ss_pred cCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEehh
Confidence 99999996 78999999885 11 12459999999998886677777765
Q ss_pred --cHHHHHHHHHHHccccccC
Q 015454 380 --DIKILRDIEQYYSTQIDEM 398 (406)
Q Consensus 380 --~~~~~~~~~~~~~~~~~~~ 398 (406)
.......+-+++...+...
T Consensus 675 ~~~~~~~~~lp~W~~~~~~~~ 695 (705)
T TIGR00604 675 YARSNKRKKLPKWIQDTIQSS 695 (705)
T ss_pred cCCcchhhhcCHHHHhhcccc
Confidence 2234445555555544433
No 150
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.71 E-value=5.9e-16 Score=142.11 Aligned_cols=117 Identities=16% Similarity=0.287 Sum_probs=100.3
Q ss_pred HHHHHHHHHhhcC--CcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCc-EEEEcCcccCC
Q 015454 259 KFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTR-VLITTDVWARG 335 (406)
Q Consensus 259 ~~~~l~~~~~~~~--~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~-vli~t~~~~~G 335 (406)
++..|..++.+.. +.++|+|++..+..+.+.++|...++....+.|.....+|..++.+|...++- +|+.|.+.+-|
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccc
Confidence 4444444444332 25999999999999999999999999999999999999999999999987764 56789999999
Q ss_pred CCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEE
Q 015454 336 LDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 375 (406)
Q Consensus 336 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~ 375 (406)
+|+..++.||+++..|++..-.|.+.|++|.|++..+.+|
T Consensus 1109 INLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1109 INLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred ccccccceEEEecCCCCcchhhHHHHHHHhccCccceeee
Confidence 9999999999999999999999999999999988654443
No 151
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.71 E-value=7.2e-16 Score=149.56 Aligned_cols=311 Identities=13% Similarity=0.201 Sum_probs=209.1
Q ss_pred CChHHHHHhHHhhhc-CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHH-HHhccCcceeE
Q 015454 55 KPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI-LAIGDFINIQA 132 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~-~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~-~~~~~~~~~~~ 132 (406)
...+.|.+.++-+.+ +.++++.+|+|||||.++-++++. .....++.++.|..+.+..++..+ +++....+..+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~ 1218 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRI 1218 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCceE
Confidence 347889999988776 467999999999999998888776 344568999999999988776655 56777778888
Q ss_pred EEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC------cHHHHHHHHHhCCCC
Q 015454 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG------FKDQIYDVYRYLPPD 206 (406)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~------~~~~~~~~~~~~~~~ 206 (406)
..+.|....+... .+..+++|+||+++-.+ + ..+..++.|+||.|.+.... ... ++.+...+.++
T Consensus 1219 ~~l~ge~s~~lkl---~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ 1289 (1674)
T KOG0951|consen 1219 VKLTGETSLDLKL---LQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKK 1289 (1674)
T ss_pred EecCCccccchHH---hhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhh
Confidence 8888877765443 33479999999997655 2 56778999999999987432 011 44455555567
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEeccc---ccHHHHHH---HHHhhc--CCcceEEE
Q 015454 207 LQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVERE---EWKFDTLC---DLYDTL--TITQAVIF 278 (406)
Q Consensus 207 ~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~---~~~~~~--~~~k~lif 278 (406)
.+++++|..+.+. .+. ....+..+.-......+.........++.. ........ ..+.++ ..++.+||
T Consensus 1290 ir~v~ls~~lana-~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf 1365 (1674)
T KOG0951|consen 1290 IRVVALSSSLANA-RDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVF 1365 (1674)
T ss_pred eeEEEeehhhccc-hhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEE
Confidence 8899999988663 222 111222222111222222222222222221 11122111 111122 33689999
Q ss_pred ecchhhHHHHHHHHhcC----------------------CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCC
Q 015454 279 CNTKRKVDWLTEKMRGY----------------------NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 336 (406)
Q Consensus 279 ~~~~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 336 (406)
+++++.+..++..+-.. ..+.++-|.+++..+...+-..|..|.+.|+|.... ..|+
T Consensus 1366 ~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~ 1444 (1674)
T KOG0951|consen 1366 LPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGT 1444 (1674)
T ss_pred eccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccc
Confidence 99999987766544211 122333388999999999999999999999998877 6777
Q ss_pred CCCCCCEEEEecC-----------CCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHH
Q 015454 337 DVQQVSLVINYDL-----------PNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDI 387 (406)
Q Consensus 337 d~~~~~~vi~~~~-----------~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 387 (406)
-. ..+.|+..+. +.+.+...|+.|++.| .|.|++++...+..+++++
T Consensus 1445 ~~-~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1445 KL-KAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred cc-cceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 66 3444554332 4678889999999998 5789999999888777654
No 152
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.70 E-value=3.1e-15 Score=143.93 Aligned_cols=122 Identities=19% Similarity=0.309 Sum_probs=105.4
Q ss_pred HHHHHHHHHhhcCC--cceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCC--cEEEEcCcccC
Q 015454 259 KFDTLCDLYDTLTI--TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTT--RVLITTDVWAR 334 (406)
Q Consensus 259 ~~~~l~~~~~~~~~--~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~~ 334 (406)
|+..|.-++++.+. .++|||++..+..+.+...|.-.|+.+.-+.|....++|...+++|+.+.. ++|+.|.+.+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 56666666665433 599999999999999999999999999999999999999999999987653 67788999999
Q ss_pred CCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEE--eccCc
Q 015454 335 GLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF--VKNDD 380 (406)
Q Consensus 335 G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~--~~~~~ 380 (406)
|||+.+++.||+|+..|++..-.|+..|.+|.|+...+.+| ++++.
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 99999999999999999999999999999999988665544 55543
No 153
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.70 E-value=1.3e-16 Score=151.78 Aligned_cols=317 Identities=16% Similarity=0.179 Sum_probs=203.7
Q ss_pred CChHHHHHhHHhhhc----CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 55 KPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~----~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.+.+||...+.++.. +-+.|+...+|-|||....-.+.+.+......+..||+||+..|.++. .++..+... +
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~-~Ef~kWaPS--v 470 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWS-SEFPKWAPS--V 470 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCch-hhccccccc--e
Confidence 789999999988765 457899999999999776665666554433344589999988877654 445454422 3
Q ss_pred eEEEEECCcchHHhH--HHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCce
Q 015454 131 QAHACVGGKSVGEDI--RKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~--~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~ 208 (406)
......|........ .......+|+++|++.+.+ ....+..-++.++|+||-|++.+.. ..+...++......+
T Consensus 471 ~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~t~y~~q~ 546 (1157)
T KOG0386|consen 471 QKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLNTHYRAQR 546 (1157)
T ss_pred eeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHHHHHhhccccchh
Confidence 333333332222111 2223568999999988765 2223334557889999999986543 222333332333444
Q ss_pred EEEEEecCChHHH-------------------------------------------------------HHH--------H
Q 015454 209 VVLISATLPHEIL-------------------------------------------------------EMT--------T 225 (406)
Q Consensus 209 ~i~lSAT~~~~~~-------------------------------------------------------~~~--------~ 225 (406)
.+++|+||..... .++ .
T Consensus 547 RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE 626 (1157)
T KOG0386|consen 547 RLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVE 626 (1157)
T ss_pred hhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHh
Confidence 5666777411000 000 0
Q ss_pred hcCCCCeEE-----------------------EecC--C---c-----------------cccCCc----eEEEE--Eec
Q 015454 226 KFMTDPVKI-----------------------LVKR--D---E-----------------LTLEGI----KQFFV--AVE 254 (406)
Q Consensus 226 ~~~~~~~~~-----------------------~~~~--~---~-----------------~~~~~~----~~~~~--~~~ 254 (406)
..+++.+.. ..+. . . +...++ ...+. ..-
T Consensus 627 ~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~ 706 (1157)
T KOG0386|consen 627 QELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLV 706 (1157)
T ss_pred hhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHHH
Confidence 000000000 0000 0 0 000000 00000 111
Q ss_pred ccccHHHHHHHHHhhcC--CcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCC---cEEEEc
Q 015454 255 REEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTT---RVLITT 329 (406)
Q Consensus 255 ~~~~~~~~l~~~~~~~~--~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t 329 (406)
....+++.|..++-+.. +.+++.||........+..+|.-.++....+.|.+..++|...++.|+.-+. .+|..|
T Consensus 707 R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllst 786 (1157)
T KOG0386|consen 707 RVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLST 786 (1157)
T ss_pred HhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeee
Confidence 12335555555554332 3689999999999999999999999999999999999999999999987654 466789
Q ss_pred CcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEecc
Q 015454 330 DVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKN 378 (406)
Q Consensus 330 ~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~ 378 (406)
.+.+.|+|+..++.||+++..|++....|+..|+.|.|+...+-++...
T Consensus 787 ragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 787 RAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred cccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 9999999999999999999999999999999999999988776666443
No 154
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.68 E-value=1.3e-14 Score=137.73 Aligned_cols=287 Identities=13% Similarity=0.153 Sum_probs=182.9
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcC
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (406)
-.++.+|+|||||.+...++...+. .+..++|+++.+++|+.+....++..+-. +.....-..+.... ...
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~--~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~i~------~~~ 121 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALK--NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYIID------GRP 121 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhcc--CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeecccccccc------ccc
Confidence 3689999999999887776666543 33567999999999999999999765321 22111111111110 113
Q ss_pred CCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcH-------HHHHHHHHhCCCCceEEEEEecCChHHHHHH
Q 015454 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK-------DQIYDVYRYLPPDLQVVLISATLPHEILEMT 224 (406)
Q Consensus 152 ~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~-------~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~ 224 (406)
.+-+++..++|++.. ...+.++++||+||+-...+.-+. ..+..+...+....++|++.|+++....+++
T Consensus 122 ~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl 198 (824)
T PF02399_consen 122 YDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFL 198 (824)
T ss_pred cCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHH
Confidence 467788888887653 224556899999999987655332 2223344455667889999999999999999
Q ss_pred HhcCCCC-eEEEecCCccccCCc---eEEEEE---------------------------------ecccccHHHHHHHHH
Q 015454 225 TKFMTDP-VKILVKRDELTLEGI---KQFFVA---------------------------------VEREEWKFDTLCDLY 267 (406)
Q Consensus 225 ~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~---------------------------------~~~~~~~~~~l~~~~ 267 (406)
....+.. +.++.. + +...+. ...... .............++
T Consensus 199 ~~~Rp~~~i~vI~n-~-y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~ 276 (824)
T PF02399_consen 199 ASCRPDENIHVIVN-T-YASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELL 276 (824)
T ss_pred HHhCCCCcEEEEEe-e-eecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHH
Confidence 9876543 222221 1 111000 000000 000011122333333
Q ss_pred hhcCC-cceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCC--CEE
Q 015454 268 DTLTI-TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQV--SLV 344 (406)
Q Consensus 268 ~~~~~-~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~--~~v 344 (406)
..... +++.||+++...++.+++.....+..+..+++..+..+ + +. -++.+|++-|+++..|+++... +-+
T Consensus 277 ~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf~~~HF~~~ 350 (824)
T PF02399_consen 277 ARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSFEEKHFDSM 350 (824)
T ss_pred HHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEeccchhhceEE
Confidence 33332 47888999999999999998888888998888755552 2 22 4688999999999999998643 334
Q ss_pred EEecCC----CChhhhHhhhhhccCCCCceeEEEEeccC
Q 015454 345 INYDLP----NNRELYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 345 i~~~~~----~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
+.+=-| .++.+..|++||+ |.=.+.+.+++++..
T Consensus 351 f~yvk~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 351 FAYVKPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDAS 388 (824)
T ss_pred EEEecCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEecc
Confidence 444222 3455689999999 655677888887754
No 155
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=8e-15 Score=140.64 Aligned_cols=129 Identities=19% Similarity=0.232 Sum_probs=95.6
Q ss_pred CCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCccee
Q 015454 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (406)
Q Consensus 52 ~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (406)
|. .|++.|.-.--.+ .+.-+..+.||.|||+++.+|+.-....+ ..+-+++++.-|+..-++++..+....+++
T Consensus 83 G~-r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~G---kgVhVVTvNdYLA~RDae~m~~vy~~LGLt 156 (939)
T PRK12902 83 GM-RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALTG---KGVHVVTVNDYLARRDAEWMGQVHRFLGLS 156 (939)
T ss_pred CC-CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhcC---CCeEEEeCCHHHHHhHHHHHHHHHHHhCCe
Confidence 44 5666665544444 35578999999999999998887554443 448999999999999999999999999999
Q ss_pred EEEEECCcchHHhHHHHhcCCCEEEechHHHH-HHHHcc------CCCcCCcceeecchhhHHh
Q 015454 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRK------TLRTRAIKLLVLDESDEML 188 (406)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~-~~l~~~------~~~~~~~~~vV~DE~h~~~ 188 (406)
++...++.+..++. ....++|+.+|...|- +++.++ ......+.+.|+||++.++
T Consensus 157 vg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 157 VGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 99887766554443 3456899999987772 333322 1234678899999999853
No 156
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.64 E-value=1e-15 Score=108.43 Aligned_cols=81 Identities=46% Similarity=0.779 Sum_probs=76.9
Q ss_pred HHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCC
Q 015454 287 WLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRF 366 (406)
Q Consensus 287 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 366 (406)
.+.+.|...++.+..+||+++..+|..+++.|+++...+||+|+++++|+|+|.+++|++++++++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46777888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 015454 367 G 367 (406)
Q Consensus 367 ~ 367 (406)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 157
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.60 E-value=4.1e-13 Score=135.03 Aligned_cols=308 Identities=16% Similarity=0.189 Sum_probs=170.2
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhc
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (406)
+..+|...+|||||++.+...-.... ....+++++|+.++.|-.|+.+.+..+........ ...+..+-.+.+..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~-~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~ 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLE-LPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLED 348 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHh-ccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhc
Confidence 45899999999999887765544443 36678899999999999999999998875433322 22223333333333
Q ss_pred -CCCEEEechHHHHHHHHccC--CCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHH-HHh
Q 015454 151 -GVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEM-TTK 226 (406)
Q Consensus 151 -~~~iii~T~~~l~~~l~~~~--~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~-~~~ 226 (406)
...|+|||-++|........ ....+--+||+||||+- +++..-..+...++ +...+++|+||-...... ...
T Consensus 349 ~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~-~a~~~gFTGTPi~~~d~~tt~~ 424 (962)
T COG0610 349 GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALK-KAIFIGFTGTPIFKEDKDTTKD 424 (962)
T ss_pred CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhc-cceEEEeeCCccccccccchhh
Confidence 35899999999988776541 12233347999999974 34444444455554 366899999984321111 112
Q ss_pred cCCCCeEEEecCCccccCCc-eEEEEEe---ccccc----------------------------------------H---
Q 015454 227 FMTDPVKILVKRDELTLEGI-KQFFVAV---EREEW----------------------------------------K--- 259 (406)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~----------------------------------------~--- 259 (406)
.++.........+...-... ...|... ..... .
T Consensus 425 ~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~ 504 (962)
T COG0610 425 VFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRA 504 (962)
T ss_pred hhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHH
Confidence 22222222111111111111 1111110 00000 0
Q ss_pred H-HHHHHHHh-hcCCcceEEEecchhhHHHHHHHHhcCC---------------------ceEEEe--ecCCCHHHHHHH
Q 015454 260 F-DTLCDLYD-TLTITQAVIFCNTKRKVDWLTEKMRGYN---------------------FTVSSM--HGDMPQKERDAI 314 (406)
Q Consensus 260 ~-~~l~~~~~-~~~~~k~lif~~~~~~~~~l~~~l~~~~---------------------~~~~~~--~~~~~~~~r~~~ 314 (406)
. +....+.+ .....++.+.+.++..+..+.+...... ..-... |... .......
T Consensus 505 a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 583 (962)
T COG0610 505 AKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDEKKDL 583 (962)
T ss_pred HHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HHHHhhh
Confidence 0 00111111 1222477888888774433333322110 000000 1111 1122333
Q ss_pred HHH--HhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCC--C-Cc-eeEEEEeccCcHHHHHHHH
Q 015454 315 MGE--FRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRF--G-RK-GVAINFVKNDDIKILRDIE 388 (406)
Q Consensus 315 ~~~--f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~--~-~~-~~~~~~~~~~~~~~~~~~~ 388 (406)
..+ ......++||.++++-+|+|.|.++.++.-. |.-.-..+|.+.|+.|. + ++ |.++-|.. ..+.+....
T Consensus 584 ~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYvDK-~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g--l~e~l~~Al 660 (962)
T COG0610 584 IKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVDK-PLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG--LKEALKKAL 660 (962)
T ss_pred hhhhcCcCCCCCEEEEEccccccCCccccceEEecc-ccccchHHHHHHHhccCCCCCCCCcEEEECcc--hHHHHHHHH
Confidence 334 2456789999999999999999998888665 46667899999999997 3 23 44444443 334444443
Q ss_pred HHH
Q 015454 389 QYY 391 (406)
Q Consensus 389 ~~~ 391 (406)
+.+
T Consensus 661 ~~Y 663 (962)
T COG0610 661 KLY 663 (962)
T ss_pred HHh
Confidence 333
No 158
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.59 E-value=2.4e-13 Score=130.91 Aligned_cols=140 Identities=14% Similarity=0.117 Sum_probs=95.8
Q ss_pred EEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhH---HHH-h
Q 015454 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI---RKL-E 149 (406)
Q Consensus 74 il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~ 149 (406)
+..+.+|||||.+|+-.+...+.. |..+|+++|..+|..|+.+.+++... +..+..++++.+..++. ... .
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~---Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA---GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc---CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 444446999999999887777654 44699999999999999999987542 23466777776655433 333 3
Q ss_pred cCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC-----cHHHHHHHHHhCCCCceEEEEEecCChHHHHHH
Q 015454 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----FKDQIYDVYRYLPPDLQVVLISATLPHEILEMT 224 (406)
Q Consensus 150 ~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~-----~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~ 224 (406)
....|+|+|-..+. ..+.++++||+||-|.-+-.+ +...-..+++....+..+++.|||++-+.....
T Consensus 239 G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 239 GQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 44789999964443 456789999999999654221 122222333333457779999999987655443
Q ss_pred H
Q 015454 225 T 225 (406)
Q Consensus 225 ~ 225 (406)
.
T Consensus 312 ~ 312 (665)
T PRK14873 312 E 312 (665)
T ss_pred h
Confidence 3
No 159
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.57 E-value=8.2e-12 Score=113.04 Aligned_cols=289 Identities=16% Similarity=0.198 Sum_probs=198.6
Q ss_pred CCceeEEEEcCcHHHHHHHHHHHHHhccCc-cee--------EE----------EEECCcchHHhHHHH-----------
Q 015454 99 SREVQALILSPTRELATQTEKVILAIGDFI-NIQ--------AH----------ACVGGKSVGEDIRKL----------- 148 (406)
Q Consensus 99 ~~~~~~lil~P~~~l~~q~~~~~~~~~~~~-~~~--------~~----------~~~~~~~~~~~~~~~----------- 148 (406)
-..+++||++|++..|-++.+.+.++.... ... .. .-........++...
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 346789999999999999999887765431 100 00 000001111122222
Q ss_pred --------------hcCCCEEEechHHHHHHHHc------cCCCcCCcceeecchhhHHhccCcH--HHHHHHHHhCCCC
Q 015454 149 --------------EHGVHVVSGTPGRVCDMIKR------KTLRTRAIKLLVLDESDEMLSRGFK--DQIYDVYRYLPPD 206 (406)
Q Consensus 149 --------------~~~~~iii~T~~~l~~~l~~------~~~~~~~~~~vV~DE~h~~~~~~~~--~~~~~~~~~~~~~ 206 (406)
...+||||++|=-|...+.. ..-.++++.++|+|.+|.+.-.+|. ..+...++..|.+
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCC
Confidence 13378999999988877764 2334688999999999988755543 2233334444421
Q ss_pred ---------------------ceEEEEEecCChHHHHHHHhcCCCCeEE---EecCC-----ccccCCceEEEEEecccc
Q 015454 207 ---------------------LQVVLISATLPHEILEMTTKFMTDPVKI---LVKRD-----ELTLEGIKQFFVAVEREE 257 (406)
Q Consensus 207 ---------------------~~~i~lSAT~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~ 257 (406)
.|.+++|+...+++.......+.+.... ..... ......+.+.+...+...
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 5999999999999888888766554222 11111 112234455555433221
Q ss_pred ------cHHH-----HHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEE
Q 015454 258 ------WKFD-----TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVL 326 (406)
Q Consensus 258 ------~~~~-----~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 326 (406)
...+ .+..+.+....+.+|||++|.-.--++.++|++.++....+|...+..+-.+.-..|..|+.++|
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iL 354 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPIL 354 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEE
Confidence 1222 22223324444789999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcc--cCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCC------ceeEEEEeccCcHHHHHHH
Q 015454 327 ITTDVW--ARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR------KGVAINFVKNDDIKILRDI 387 (406)
Q Consensus 327 i~t~~~--~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~------~~~~~~~~~~~~~~~~~~~ 387 (406)
+.|.-+ -+-..+.++++||++++|..+.-|...+.-.+.... ...|.++++.-|.-.++.+
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 999753 355678899999999999999998888866655443 5788999998887776665
No 160
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.57 E-value=2.2e-13 Score=129.13 Aligned_cols=116 Identities=18% Similarity=0.219 Sum_probs=96.3
Q ss_pred HHHHHHHHhhc--CCcceEEEecchhhHHHHHHHHhcC----------------------CceEEEeecCCCHHHHHHHH
Q 015454 260 FDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGY----------------------NFTVSSMHGDMPQKERDAIM 315 (406)
Q Consensus 260 ~~~l~~~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~~~~r~~~~ 315 (406)
+-.|..+++.. -+.|.|||.++......+..+|... |.....+.|......|....
T Consensus 1128 miLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~ 1207 (1567)
T KOG1015|consen 1128 MILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWA 1207 (1567)
T ss_pred eehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHH
Confidence 33445555433 2369999999999888888877521 45577889999999999999
Q ss_pred HHHhcCCC----cEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEE
Q 015454 316 GEFRSGTT----RVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 375 (406)
Q Consensus 316 ~~f~~~~~----~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~ 375 (406)
+.|++-.. ..||.|.+.+-|+|+-.++.||+++..|+++--.|.+=|+.|.|+..+|++|
T Consensus 1208 ~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1208 EEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99986432 4789999999999999999999999999999999999999999999988876
No 161
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=3.4e-13 Score=131.07 Aligned_cols=119 Identities=18% Similarity=0.287 Sum_probs=91.4
Q ss_pred HHHHHHHH-Hhhc-CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCC-CcEEEEcCcccCC
Q 015454 259 KFDTLCDL-YDTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT-TRVLITTDVWARG 335 (406)
Q Consensus 259 ~~~~l~~~-~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~vli~t~~~~~G 335 (406)
|...+..- .+.+ .+.++||-+.|++..+.+++.|...|++..++++.....+...+-+ .|. ..|-|||+++++|
T Consensus 613 K~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNMAGRG 689 (1112)
T PRK12901 613 KYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNMAGRG 689 (1112)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccCcCCC
Confidence 44444433 3333 3358999999999999999999999999888888754333333322 344 3688999999999
Q ss_pred CCCC--------CCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCc
Q 015454 336 LDVQ--------QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDD 380 (406)
Q Consensus 336 ~d~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 380 (406)
-|+. +--+||-...+.|...-.|..||+||.|.+|.+..|++-+|
T Consensus 690 TDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 690 TDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred cCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 9985 33478888889999999999999999999999888887554
No 162
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.53 E-value=2.2e-12 Score=132.62 Aligned_cols=317 Identities=18% Similarity=0.195 Sum_probs=201.2
Q ss_pred CCChHHHHHhHHhhhc-----CCcEEEECCCCCChhhHhHHHHHhhhccCCC-ceeEEEEcCcHHHHHHHHHHHHHhccC
Q 015454 54 EKPSAIQQRAVMPIIK-----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSR-EVQALILSPTRELATQTEKVILAIGDF 127 (406)
Q Consensus 54 ~~l~~~Q~~~~~~i~~-----~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~-~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (406)
..++++|.+.++.+.. +.+.++...+|.|||+..+..+......... .+.++++|| .++..+|.+++.++...
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p-~s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVP-ASLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEec-HHHHHHHHHHHhhhCcc
Confidence 4689999999887552 5778999999999997766655543322222 356999999 66678888888887655
Q ss_pred cceeEEEEECCcch----HHhHHHHhcC-----CCEEEechHHHHHHH-HccCCCcCCcceeecchhhHHhccCcHHHHH
Q 015454 128 INIQAHACVGGKSV----GEDIRKLEHG-----VHVVSGTPGRVCDMI-KRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (406)
Q Consensus 128 ~~~~~~~~~~~~~~----~~~~~~~~~~-----~~iii~T~~~l~~~l-~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~ 197 (406)
... +...+|.... .+........ .+++++|++.+.... ....+....++.+|+||+|.+.+.... ...
T Consensus 416 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~-~~~ 493 (866)
T COG0553 416 LRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSS-EGK 493 (866)
T ss_pred ccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhH-HHH
Confidence 443 4455555431 2333333222 689999999988742 123344566889999999997665421 112
Q ss_pred HHHHhCCCCceEEEEEecCChH-HH--------------------------------------------------HHHHh
Q 015454 198 DVYRYLPPDLQVVLISATLPHE-IL--------------------------------------------------EMTTK 226 (406)
Q Consensus 198 ~~~~~~~~~~~~i~lSAT~~~~-~~--------------------------------------------------~~~~~ 226 (406)
++. .+.... .+.+|+||-.. +. ..+..
T Consensus 494 ~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 571 (866)
T COG0553 494 ALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSP 571 (866)
T ss_pred HHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Confidence 222 222111 25555554100 00 00000
Q ss_pred cC-CCC-eE--EE------------ecC------------C-------------ccccC-------C------------c
Q 015454 227 FM-TDP-VK--IL------------VKR------------D-------------ELTLE-------G------------I 246 (406)
Q Consensus 227 ~~-~~~-~~--~~------------~~~------------~-------------~~~~~-------~------------~ 246 (406)
+. ... .. +. +.. . ..... . +
T Consensus 572 f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~ 651 (866)
T COG0553 572 FILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQI 651 (866)
T ss_pred HhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHh
Confidence 00 000 00 00 000 0 00000 0 0
Q ss_pred eE----EEEE----ec--------------------ccc-cHHHHHHHHH-h--hcCCc--ceEEEecchhhHHHHHHHH
Q 015454 247 KQ----FFVA----VE--------------------REE-WKFDTLCDLY-D--TLTIT--QAVIFCNTKRKVDWLTEKM 292 (406)
Q Consensus 247 ~~----~~~~----~~--------------------~~~-~~~~~l~~~~-~--~~~~~--k~lif~~~~~~~~~l~~~l 292 (406)
.. +... .. ... .+...+..++ . ..... ++++|++.......+...+
T Consensus 652 ~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l 731 (866)
T COG0553 652 CNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYL 731 (866)
T ss_pred ccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHH
Confidence 00 0000 00 000 3555665666 2 22224 8999999999999999999
Q ss_pred hcCCceEEEeecCCCHHHHHHHHHHHhcC--CCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCce
Q 015454 293 RGYNFTVSSMHGDMPQKERDAIMGEFRSG--TTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG 370 (406)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~ 370 (406)
...++....++|.++..+|...+++|.++ ...+++.+.+.+.|+|+..+++|+++++.|++....|+..|+.|.|++.
T Consensus 732 ~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~ 811 (866)
T COG0553 732 KALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKR 811 (866)
T ss_pred HhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcc
Confidence 99998899999999999999999999986 3455667789999999999999999999999999999999999999886
Q ss_pred eEEEE
Q 015454 371 VAINF 375 (406)
Q Consensus 371 ~~~~~ 375 (406)
.+.++
T Consensus 812 ~v~v~ 816 (866)
T COG0553 812 PVKVY 816 (866)
T ss_pred eeEEE
Confidence 65554
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.49 E-value=1.2e-13 Score=103.85 Aligned_cols=135 Identities=16% Similarity=0.250 Sum_probs=82.6
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (406)
+|+-.++..++|+|||.-.+.-+...... ++.++|++.||+.++.++.+.++... +.+...... ...
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~--~~~rvLvL~PTRvva~em~~aL~~~~----~~~~t~~~~-------~~~ 69 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK--RRLRVLVLAPTRVVAEEMYEALKGLP----VRFHTNARM-------RTH 69 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH--TT--EEEEESSHHHHHHHHHHTTTSS----EEEESTTSS----------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH--ccCeEEEecccHHHHHHHHHHHhcCC----cccCceeee-------ccc
Confidence 45667899999999998766665554332 35679999999999999999886532 222110000 012
Q ss_pred hcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC--cHHHHHHHHHhCCCCceEEEEEecCChH
Q 015454 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYDVYRYLPPDLQVVLISATLPHE 219 (406)
Q Consensus 149 ~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~lSAT~~~~ 219 (406)
..+..|-++|+..+.+.+.+ .....++++||+||||-....+ +...+..... .....+|+|||||+..
T Consensus 70 ~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~--~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE--SGEAKVIFMTATPPGS 139 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH--TTS-EEEEEESS-TT-
T ss_pred cCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhh--ccCeeEEEEeCCCCCC
Confidence 34567889999999888766 5557889999999999754433 1122222221 1335799999998763
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.45 E-value=7.7e-13 Score=118.40 Aligned_cols=155 Identities=19% Similarity=0.144 Sum_probs=92.7
Q ss_pred HHHHhHHhhh-------------cCCcEEEECCCCCChhhHhHHHHHhhhccCCC--ceeEEEEcCcHHHHHHHHHHHHH
Q 015454 59 IQQRAVMPII-------------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILA 123 (406)
Q Consensus 59 ~Q~~~~~~i~-------------~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~--~~~~lil~P~~~l~~q~~~~~~~ 123 (406)
||.+++..++ ..+.+++...+|+|||...+..+......... ...+||+||. .+..||..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 6777777653 23568999999999997777655433222221 2259999998 888999999999
Q ss_pred hccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHH---ccCCCcCCcceeecchhhHHhccCcHHHHHHHH
Q 015454 124 IGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK---RKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 200 (406)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~---~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~ 200 (406)
+.......+....+...............+++|+|++.+..... ...+....+++||+||+|.+.+.. ......+
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~~~~~l 157 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SKRYKAL 157 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SHHHHHH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--ccccccc
Confidence 98655566666655552222222233558899999999981100 001112348999999999985443 2333334
Q ss_pred HhCCCCceEEEEEecCC
Q 015454 201 RYLPPDLQVVLISATLP 217 (406)
Q Consensus 201 ~~~~~~~~~i~lSAT~~ 217 (406)
..+. ...++++||||-
T Consensus 158 ~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 158 RKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp HCCC-ECEEEEE-SS-S
T ss_pred cccc-cceEEeeccccc
Confidence 4454 566889999984
No 165
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.24 E-value=1.1e-10 Score=102.43 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=57.5
Q ss_pred CCCCCChHHHHHhHH----hhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCC---ceeEEEEcCcHHHHHHHHHHHHH
Q 015454 51 YGFEKPSAIQQRAVM----PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR---EVQALILSPTRELATQTEKVILA 123 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~----~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~---~~~~lil~P~~~l~~q~~~~~~~ 123 (406)
+.| .++|.|.+... .+..|+++++.+|||+|||++++.+++..+..... +.+++|.++|.++..|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 455 57999998544 45568899999999999999999999876544322 24799999999998888777765
Q ss_pred h
Q 015454 124 I 124 (406)
Q Consensus 124 ~ 124 (406)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.24 E-value=1.1e-10 Score=102.43 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=57.5
Q ss_pred CCCCCChHHHHHhHH----hhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCC---ceeEEEEcCcHHHHHHHHHHHHH
Q 015454 51 YGFEKPSAIQQRAVM----PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR---EVQALILSPTRELATQTEKVILA 123 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~----~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~---~~~~lil~P~~~l~~q~~~~~~~ 123 (406)
+.| .++|.|.+... .+..|+++++.+|||+|||++++.+++..+..... +.+++|.++|.++..|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 455 57999998544 45568899999999999999999999876544322 24799999999998888777765
Q ss_pred h
Q 015454 124 I 124 (406)
Q Consensus 124 ~ 124 (406)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 167
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=2.4e-09 Score=96.35 Aligned_cols=333 Identities=17% Similarity=0.184 Sum_probs=204.4
Q ss_pred CCChHHHHHhHHhhhcCCcEEEE-CCCCCCh--hhHhHHHHHhhhcc----------------------------CCCce
Q 015454 54 EKPSAIQQRAVMPIIKGRDVIAQ-AQSGTGK--TSMIALTVCQTVDT----------------------------SSREV 102 (406)
Q Consensus 54 ~~l~~~Q~~~~~~i~~~~~~il~-~~tGsGK--T~~~~~~i~~~~~~----------------------------~~~~~ 102 (406)
..+++.|.+.+......++++-. ...+.|+ +.+|++.+++++.. +-..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 46899999999988887876532 2223444 46777888877621 11246
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhccCcce---eE-------EEEEC---------------------Ccc--------hHH
Q 015454 103 QALILSPTRELATQTEKVILAIGDFINI---QA-------HACVG---------------------GKS--------VGE 143 (406)
Q Consensus 103 ~~lil~P~~~l~~q~~~~~~~~~~~~~~---~~-------~~~~~---------------------~~~--------~~~ 143 (406)
++|||||+++.|-.....+..+....+- .+ ....| ..+ ...
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 7999999999999998888776433221 00 00011 000 000
Q ss_pred hHHH---HhcCCCEEEechHHHHHHHHccC------CCcCCcceeecchhhHHhccCcHHHHH--HHHHhCCCC------
Q 015454 144 DIRK---LEHGVHVVSGTPGRVCDMIKRKT------LRTRAIKLLVLDESDEMLSRGFKDQIY--DVYRYLPPD------ 206 (406)
Q Consensus 144 ~~~~---~~~~~~iii~T~~~l~~~l~~~~------~~~~~~~~vV~DE~h~~~~~~~~~~~~--~~~~~~~~~------ 206 (406)
.... .....||+||+|=-|...+.+.. -.++++.++|+|.+|.+...+|..... .-++.+|..
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~~Df 454 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHDVDF 454 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccCCCh
Confidence 0001 12347999999988887776322 234778899999999988776653332 223333322
Q ss_pred ---------------ceEEEEEecCChHHHHHHHhcCCCCeEEEecCCc----------cccCCceEEEEEe---ccccc
Q 015454 207 ---------------LQVVLISATLPHEILEMTTKFMTDPVKILVKRDE----------LTLEGIKQFFVAV---EREEW 258 (406)
Q Consensus 207 ---------------~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~---~~~~~ 258 (406)
.|.+++|+--.+.........+.+-......... ....++-+....- ...+.
T Consensus 455 SRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~ 534 (698)
T KOG2340|consen 455 SRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDA 534 (698)
T ss_pred hheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchH
Confidence 2455555555555555444444332111111111 1111111111111 11122
Q ss_pred HHHHHHH-----HHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcc-
Q 015454 259 KFDTLCD-----LYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVW- 332 (406)
Q Consensus 259 ~~~~l~~-----~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~- 332 (406)
.+..... +.+.. ..-+|||.++.-.--++..++++.++....+|...+...-.+.-+-|-.|...||+.|.-+
T Consensus 535 RFkyFv~~ImPq~~k~t-~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~h 613 (698)
T KOG2340|consen 535 RFKYFVDKIMPQLIKRT-ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAH 613 (698)
T ss_pred HHHHHHHhhchhhcccc-cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhh
Confidence 2222221 11111 2357999999999999999999998888888888888888888889999999999999754
Q ss_pred -cCCCCCCCCCEEEEecCCCChhhh---HhhhhhccCCCC----ceeEEEEeccCcHHHHHHH
Q 015454 333 -ARGLDVQQVSLVINYDLPNNRELY---IHRIGRSGRFGR----KGVAINFVKNDDIKILRDI 387 (406)
Q Consensus 333 -~~G~d~~~~~~vi~~~~~~s~~~~---~Q~~GR~~R~~~----~~~~~~~~~~~~~~~~~~~ 387 (406)
-+-.++.+++.||++.+|.++.-| +.+.+|..-.|+ .-.|.++++.-|.-.++.+
T Consensus 614 ffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 614 FFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred hhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 356889999999999999888665 556666544442 2578888888776555544
No 168
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.16 E-value=3.9e-08 Score=97.15 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=58.9
Q ss_pred CCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCC-----CCc--e---eEEEEeccCcHHHHHHHHHHH
Q 015454 322 TTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRF-----GRK--G---VAINFVKNDDIKILRDIEQYY 391 (406)
Q Consensus 322 ~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-----~~~--~---~~~~~~~~~~~~~~~~~~~~~ 391 (406)
..+.+++.+++.+|||.|++-.++.+....|...-.|.+||+-|. |.. . ...++.+++..+....|.+.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 568999999999999999999999999889999999999999996 221 1 233555666777888888777
Q ss_pred ccc
Q 015454 392 STQ 394 (406)
Q Consensus 392 ~~~ 394 (406)
...
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 654
No 169
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.15 E-value=1.4e-09 Score=104.73 Aligned_cols=312 Identities=18% Similarity=0.245 Sum_probs=188.2
Q ss_pred hHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEE
Q 015454 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACV 136 (406)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 136 (406)
++|-.+.+-.+.-+..-+..+-||-|||+++.+|+.-....+ ..+.+++-.--|+.--++++..+....+++++...
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~g---kgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~ 156 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAG---KGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVIL 156 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCC---CCcEEeeehHHhhhhCHHHHHHHHHHcCCceeecc
Confidence 444444555555556689999999999999988876444443 34788888899999999999999999999999988
Q ss_pred CCcchHHhHHHHhcCCCEEEechHHHH-HHHHcc------CCCcCCcceeecchhhHHhcc----------------CcH
Q 015454 137 GGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRK------TLRTRAIKLLVLDESDEMLSR----------------GFK 193 (406)
Q Consensus 137 ~~~~~~~~~~~~~~~~~iii~T~~~l~-~~l~~~------~~~~~~~~~vV~DE~h~~~~~----------------~~~ 193 (406)
.+....++.... .+||..+|-..|- +++..+ ......+.+.|+||++.++=. ...
T Consensus 157 ~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~~Y 234 (822)
T COG0653 157 AGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSELY 234 (822)
T ss_pred CCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCchHH
Confidence 888766665554 3799999966552 222221 112345788999999975311 012
Q ss_pred HHHHHHHHhCCCC-------------------------------------------------------------------
Q 015454 194 DQIYDVYRYLPPD------------------------------------------------------------------- 206 (406)
Q Consensus 194 ~~~~~~~~~~~~~------------------------------------------------------------------- 206 (406)
..+..+...+...
T Consensus 235 ~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ev~ 314 (822)
T COG0653 235 KKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGEVV 314 (822)
T ss_pred HHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCeEE
Confidence 2222332222110
Q ss_pred --------------------------------------------------ceEEEEEecCChHHHHHHHhcCCCCeEEEe
Q 015454 207 --------------------------------------------------LQVVLISATLPHEILEMTTKFMTDPVKILV 236 (406)
Q Consensus 207 --------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 236 (406)
....+||+|...+..++..-+......+.
T Consensus 315 IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~iP- 393 (822)
T COG0653 315 IVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVIP- 393 (822)
T ss_pred EEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeecc-
Confidence 12233333332222222222111111111
Q ss_pred cCCccccCCceEEEEEecccccHHHHHHH-HHhhc-CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHH
Q 015454 237 KRDELTLEGIKQFFVAVEREEWKFDTLCD-LYDTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAI 314 (406)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~ 314 (406)
...+................|...+.. +...+ .+.++||-+.+++..+.+.+.|.+.|++..++++.....+-..+
T Consensus 394 --Tnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Ii 471 (822)
T COG0653 394 --TNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEII 471 (822)
T ss_pred --CCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHH
Confidence 111111111111222223334444443 33333 33589999999999999999999999998888877553332222
Q ss_pred HHHHhcCCC-cEEEEcCcccCCCCCCCCC-----------EEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccC
Q 015454 315 MGEFRSGTT-RVLITTDVWARGLDVQQVS-----------LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 315 ~~~f~~~~~-~vli~t~~~~~G~d~~~~~-----------~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
-. .|.. -|-|+|+++++|-|+.--. +||-.....|-.---|.-||+||.|-+|....|++-+
T Consensus 472 a~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSle 545 (822)
T COG0653 472 AQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 545 (822)
T ss_pred hh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhH
Confidence 22 3444 5779999999999974211 3444444445444559999999999888877776644
No 170
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.11 E-value=3.8e-08 Score=92.58 Aligned_cols=104 Identities=16% Similarity=0.261 Sum_probs=86.5
Q ss_pred ceEEEecchhhHHHHHHHHhcCC------------------ceEEEeecCCCHHHHHHHHHHHhcCC---CcEEEEcCcc
Q 015454 274 QAVIFCNTKRKVDWLTEKMRGYN------------------FTVSSMHGDMPQKERDAIMGEFRSGT---TRVLITTDVW 332 (406)
Q Consensus 274 k~lif~~~~~~~~~l~~~l~~~~------------------~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vli~t~~~ 332 (406)
++|||.++......+.+.|.... .....+.|..+..+|++++++|++.. .-+++.|...
T Consensus 721 kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag 800 (1387)
T KOG1016|consen 721 KILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAG 800 (1387)
T ss_pred eEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccc
Confidence 57888888888887888776542 23446678888899999999997643 2477889999
Q ss_pred cCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEec
Q 015454 333 ARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK 377 (406)
Q Consensus 333 ~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~ 377 (406)
.-|+|+-.++.+++++.-|++..-.|.+.|+-|+|+..+|++|-.
T Consensus 801 ~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 801 SLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred cccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 999999999999999999999999999999999999999988743
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.93 E-value=3.7e-08 Score=84.17 Aligned_cols=130 Identities=19% Similarity=0.303 Sum_probs=95.7
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|+ .|++.|.-+.-.+..| -++...||-|||+++.++....... |..+=+++.+..|+..-++++..+....++
T Consensus 74 ~g~-~p~~vQll~~l~L~~G--~laEm~TGEGKTli~~l~a~~~AL~---G~~V~vvT~NdyLA~RD~~~~~~~y~~LGl 147 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKG--RLAEMKTGEGKTLIAALPAALNALQ---GKGVHVVTSNDYLAKRDAEEMRPFYEFLGL 147 (266)
T ss_dssp TS-----HHHHHHHHHHHTT--SEEEESTTSHHHHHHHHHHHHHHTT---SS-EEEEESSHHHHHHHHHHHHHHHHHTT-
T ss_pred cCC-cccHHHHhhhhhcccc--eeEEecCCCCcHHHHHHHHHHHHHh---cCCcEEEeccHHHhhccHHHHHHHHHHhhh
Confidence 455 7888888888777655 4999999999999888777655544 445889999999999999999999999999
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHHHH-HHHccCC------CcCCcceeecchhhHHh
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRKTL------RTRAIKLLVLDESDEML 188 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~-~l~~~~~------~~~~~~~vV~DE~h~~~ 188 (406)
++.....+.+..++..... ++|+.+|...|.- ++.++.. ..+.++++|+||+|.+.
T Consensus 148 sv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999998887655544443 6899999988863 4444221 13678999999999875
No 172
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.91 E-value=2.4e-08 Score=85.46 Aligned_cols=170 Identities=20% Similarity=0.163 Sum_probs=110.9
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhc----------CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeE
Q 015454 35 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK----------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA 104 (406)
Q Consensus 35 ~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~----------~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~ 104 (406)
.-.+.|++.+... | .|+..|.+++-.... ...+++-..||.||--...-.++.....+. .+.
T Consensus 23 ~y~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr--~r~ 94 (303)
T PF13872_consen 23 TYRLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR--KRA 94 (303)
T ss_pred CcccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC--Cce
Confidence 3445677655442 3 479999988765542 245899999999999777776777666553 368
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccC---CC---------
Q 015454 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT---LR--------- 172 (406)
Q Consensus 105 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~---~~--------- 172 (406)
+|++.+..|.....+.++.++.. .+.+..+..-... .....+..|+++||..|...-.... ..
T Consensus 95 vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g 169 (303)
T PF13872_consen 95 VWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCG 169 (303)
T ss_pred EEEECChhhhhHHHHHHHHhCCC-cccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHh
Confidence 99999999999999999988744 2332222110000 0012346799999999876543211 10
Q ss_pred cCCcceeecchhhHHhccCc--------HHHHHHHHHhCCCCceEEEEEecCCh
Q 015454 173 TRAIKLLVLDESDEMLSRGF--------KDQIYDVYRYLPPDLQVVLISATLPH 218 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~--------~~~~~~~~~~~~~~~~~i~lSAT~~~ 218 (406)
...=.+|||||||...+... ...+..+.+.+| +.+++.+|||-..
T Consensus 170 ~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgas 222 (303)
T PF13872_consen 170 EDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGAS 222 (303)
T ss_pred cCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccC
Confidence 01124899999999876532 234555666674 5669999999654
No 173
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.87 E-value=3.7e-06 Score=78.83 Aligned_cols=112 Identities=13% Similarity=0.206 Sum_probs=76.6
Q ss_pred HHHHhhcCCcceEEEecchhhHHHHHHHHhcCCce-------EEEeecCCCHHHHHHHHHHHh----cCCCcEEEEc--C
Q 015454 264 CDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFT-------VSSMHGDMPQKERDAIMGEFR----SGTTRVLITT--D 330 (406)
Q Consensus 264 ~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~-------~~~~~~~~~~~~r~~~~~~f~----~~~~~vli~t--~ 330 (406)
..+....+ +.+++|++|.+....+.+.++..|+- -..+-..-+ -..+++.|. .|...+|++. .
T Consensus 622 ~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGG 697 (821)
T KOG1133|consen 622 SNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGG 697 (821)
T ss_pred HHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 33444445 78999999999999999998876542 111211211 345666664 4555677654 7
Q ss_pred cccCCCCCCC--CCEEEEecCCCCh--------------------------------hhhHhhhhhccCCCCceeEEEEe
Q 015454 331 VWARGLDVQQ--VSLVINYDLPNNR--------------------------------ELYIHRIGRSGRFGRKGVAINFV 376 (406)
Q Consensus 331 ~~~~G~d~~~--~~~vi~~~~~~s~--------------------------------~~~~Q~~GR~~R~~~~~~~~~~~ 376 (406)
.+++|+|+.+ .+.|+.++.|.+- ...-|.+|||-|..++--+++++
T Consensus 698 KlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~Ll 777 (821)
T KOG1133|consen 698 KLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLL 777 (821)
T ss_pred ccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEe
Confidence 8999999986 7789999887531 11349999999998887777777
Q ss_pred ccC
Q 015454 377 KND 379 (406)
Q Consensus 377 ~~~ 379 (406)
+.+
T Consensus 778 D~R 780 (821)
T KOG1133|consen 778 DKR 780 (821)
T ss_pred hhh
Confidence 654
No 174
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.87 E-value=1.6e-08 Score=97.47 Aligned_cols=101 Identities=20% Similarity=0.196 Sum_probs=89.7
Q ss_pred ceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCC-cEE-EEcCcccCCCCCCCCCEEEEecCCC
Q 015454 274 QAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTT-RVL-ITTDVWARGLDVQQVSLVINYDLPN 351 (406)
Q Consensus 274 k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~-~vl-i~t~~~~~G~d~~~~~~vi~~~~~~ 351 (406)
+++||++....+..+...|...++....+.|.++...|...+..|.++.. .|+ ++..+...|+|+..+.+|+..++.|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 89999999999998888888888889999999999999999999985543 344 4567889999999999999999999
Q ss_pred ChhhhHhhhhhccCCCCceeEEE
Q 015454 352 NRELYIHRIGRSGRFGRKGVAIN 374 (406)
Q Consensus 352 s~~~~~Q~~GR~~R~~~~~~~~~ 374 (406)
++....|.+.|+.|.|+..++.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999999877665
No 175
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.87 E-value=1.1e-08 Score=82.34 Aligned_cols=112 Identities=20% Similarity=0.311 Sum_probs=78.5
Q ss_pred HHHhhcCCcceEEEecchhhHHHHHHHHhcCCc--eEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcC--cccCCCCCCC
Q 015454 265 DLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNF--TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD--VWARGLDVQQ 340 (406)
Q Consensus 265 ~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~--~~~~G~d~~~ 340 (406)
.+++..+ +++|||++|.+..+.+.+.+..... ...++.. +..++..+++.|++++..||+++. .+.+|+|+|+
T Consensus 3 ~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 3444444 8999999999999999999987542 1123332 355788999999999999999998 9999999995
Q ss_pred --CCEEEEecCCCChh------------------------------hhHhhhhhccCCCCceeEEEEeccC
Q 015454 341 --VSLVINYDLPNNRE------------------------------LYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 341 --~~~vi~~~~~~s~~------------------------------~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
++.||+.+.|.... ...|.+||+-|..++.-++++++++
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 77899999885321 1359999999998887777777775
No 176
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.82 E-value=2.7e-08 Score=85.65 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=52.4
Q ss_pred CChHHHHHhHHhhhcCCc-EEEECCCCCChhhHhHHHHHhhh-----ccCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015454 55 KPSAIQQRAVMPIIKGRD-VIAQAQSGTGKTSMIALTVCQTV-----DTSSREVQALILSPTRELATQTEKVILA 123 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~-~il~~~tGsGKT~~~~~~i~~~~-----~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (406)
+|++.|.+|+..++.... +++.||+|+|||.+..-.+...+ .....+.++|+++|+..-+++..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 378999999999999888 99999999999966655444442 1245567899999999999999999877
No 177
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.82 E-value=3.3e-07 Score=87.57 Aligned_cols=73 Identities=12% Similarity=0.217 Sum_probs=58.4
Q ss_pred CCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCC--CCce-----------eEEEEeccCcHHHHHHH
Q 015454 321 GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRF--GRKG-----------VAINFVKNDDIKILRDI 387 (406)
Q Consensus 321 ~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~--~~~~-----------~~~~~~~~~~~~~~~~~ 387 (406)
...+.+++.+++-+|||=|++-.++-+....|..+=.|.+||+-|. ++.| ...++++.++.+.++.|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999996 2222 23456666677777777
Q ss_pred HHHHcc
Q 015454 388 EQYYST 393 (406)
Q Consensus 388 ~~~~~~ 393 (406)
.+.+..
T Consensus 562 qkEI~~ 567 (985)
T COG3587 562 QKEIND 567 (985)
T ss_pred HHHHHH
Confidence 665543
No 178
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.73 E-value=9.7e-06 Score=73.62 Aligned_cols=126 Identities=12% Similarity=0.118 Sum_probs=71.7
Q ss_pred cceEEEecchhhHHHHHHHHhcCCc-------eEEEeecCCCHHHHHHHHHHH----hcCCCcEEE--EcCcccCCCCCC
Q 015454 273 TQAVIFCNTKRKVDWLTEKMRGYNF-------TVSSMHGDMPQKERDAIMGEF----RSGTTRVLI--TTDVWARGLDVQ 339 (406)
Q Consensus 273 ~k~lif~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~~r~~~~~~f----~~~~~~vli--~t~~~~~G~d~~ 339 (406)
+.+++|+.+.-..+.+.......|+ +...+ +.-+..+-.-.++.+ .+|..-||. +-...++|+|+.
T Consensus 531 dG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fI-etpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~ 609 (755)
T KOG1131|consen 531 DGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFI-ETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFD 609 (755)
T ss_pred CceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEE-eCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccc
Confidence 4578899887777666665554443 22222 222222223334433 356666765 457789999997
Q ss_pred CCC--EEEEecCCCCh------------------------------hhhHhhhhhccCCCCceeEEEEeccCcH--HHHH
Q 015454 340 QVS--LVINYDLPNNR------------------------------ELYIHRIGRSGRFGRKGVAINFVKNDDI--KILR 385 (406)
Q Consensus 340 ~~~--~vi~~~~~~s~------------------------------~~~~Q~~GR~~R~~~~~~~~~~~~~~~~--~~~~ 385 (406)
+-. .|++++.|.-. ..-.|+.||+-|...+--..+|-+++-. +...
T Consensus 610 hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~K~dYg~mI~aDkRf~R~dKR~ 689 (755)
T KOG1131|consen 610 HHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRGKTDYGLMIFADKRFSRGDKRS 689 (755)
T ss_pred cccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhccccceeeEeeehhhccccchh
Confidence 644 89999988422 1134999999998655444455554311 2333
Q ss_pred HHHHHHccccccCC
Q 015454 386 DIEQYYSTQIDEMP 399 (406)
Q Consensus 386 ~~~~~~~~~~~~~~ 399 (406)
++.++.+..+.+..
T Consensus 690 klp~wi~~~l~~~~ 703 (755)
T KOG1131|consen 690 KLPKWIRNHLFDAK 703 (755)
T ss_pred hhhHHHHhhhhhhc
Confidence 44444444444443
No 179
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.60 E-value=9.1e-07 Score=84.94 Aligned_cols=304 Identities=16% Similarity=0.235 Sum_probs=170.5
Q ss_pred HHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCc--eeEEEEcCcHHHHHHHHHHHHH-----hccCcceeEE
Q 015454 61 QRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE--VQALILSPTRELATQTEKVILA-----IGDFINIQAH 133 (406)
Q Consensus 61 ~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~--~~~lil~P~~~l~~q~~~~~~~-----~~~~~~~~~~ 133 (406)
...+..+..+.-+++.+.||.|||.-+.-.++..+..+..+ ..+.+.-|++-.+.-+++++.. .+...+..+.
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vR 463 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVR 463 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccc
Confidence 34455666677789999999999999988899887665443 3466667777777666666532 2222222221
Q ss_pred EEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC-cHHHHHHHHHhCCCCceEEEE
Q 015454 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPPDLQVVLI 212 (406)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~l 212 (406)
. ....+. .-.-|.++|-+.+++.+++... ...++++||.|...-.+ |-..+.+=+.-..+..+++++
T Consensus 464 f-~Sa~pr--------pyg~i~fctvgvllr~~e~glr---g~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lm 531 (1282)
T KOG0921|consen 464 F-DSATPR--------PYGSIMFCTVGVLLRMMENGLR---GISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLM 531 (1282)
T ss_pred c-cccccc--------cccceeeeccchhhhhhhhccc---ccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhh
Confidence 1 011111 1135789999999888776543 46789999999864332 111111111111234445555
Q ss_pred EecCChHHHH--------------------HHHh-cCCCCeEEEecCC---------cccc-CC-----ceEEE------
Q 015454 213 SATLPHEILE--------------------MTTK-FMTDPVKILVKRD---------ELTL-EG-----IKQFF------ 250 (406)
Q Consensus 213 SAT~~~~~~~--------------------~~~~-~~~~~~~~~~~~~---------~~~~-~~-----~~~~~------ 250 (406)
|||++.+..- ++.. +......+..... +... .. .....
T Consensus 532 satIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~ 611 (1282)
T KOG0921|consen 532 SATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNE 611 (1282)
T ss_pred hcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcc
Confidence 6654332111 1111 1111111100000 0000 00 00000
Q ss_pred ------EEecccccHHHHHHHHHhh----cCCcceEEEecchhhHHHHHHHHhcC-------CceEEEeecCCCHHHHHH
Q 015454 251 ------VAVEREEWKFDTLCDLYDT----LTITQAVIFCNTKRKVDWLTEKMRGY-------NFTVSSMHGDMPQKERDA 313 (406)
Q Consensus 251 ------~~~~~~~~~~~~l~~~~~~----~~~~k~lif~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~ 313 (406)
......+.-...+..++.. .-++-+++|.+-....-.+...+... .+.+...|+.....+..+
T Consensus 612 ~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrk 691 (1282)
T KOG0921|consen 612 STRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRK 691 (1282)
T ss_pred hhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhh
Confidence 0000000011122222221 12246788888877776676666432 346778899888888888
Q ss_pred HHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecC------------------CCChhhhHhhhhhccCCCCceeEEEE
Q 015454 314 IMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL------------------PNNRELYIHRIGRSGRFGRKGVAINF 375 (406)
Q Consensus 314 ~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~~~~~~~~~~ 375 (406)
+.+....|..++++.|.+.+..+.+.++..|+.... ..+.....|+.||+||. ++|.|...
T Consensus 692 vf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~l 770 (1282)
T KOG0921|consen 692 VFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHL 770 (1282)
T ss_pred ccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccc
Confidence 888888899999999999999888877666654221 24566688999999998 56776655
Q ss_pred ec
Q 015454 376 VK 377 (406)
Q Consensus 376 ~~ 377 (406)
+.
T Consensus 771 cs 772 (1282)
T KOG0921|consen 771 CS 772 (1282)
T ss_pred cH
Confidence 54
No 180
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.59 E-value=2.6e-06 Score=84.39 Aligned_cols=69 Identities=12% Similarity=0.025 Sum_probs=59.8
Q ss_pred cCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCCh
Q 015454 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPH 218 (406)
Q Consensus 150 ~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~ 218 (406)
....|++.||..|..-+..+.+....+..|||||||++........+.++++..++.+-+.++|++|..
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 346899999999998888888999999999999999998777777777888887778889999999753
No 181
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.53 E-value=5.9e-07 Score=74.40 Aligned_cols=123 Identities=20% Similarity=0.263 Sum_probs=71.8
Q ss_pred CChHHHHHhHHhhhcCC--cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeE
Q 015454 55 KPSAIQQRAVMPIIKGR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~--~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (406)
+|++-|.+++..++.+. -.++.|+.|+|||.+.. .+...+... +.++++++||...+.+..+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~-~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~~~---------- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLK-ALAEALEAA--GKRVIGLAPTNKAAKELREKTG---------- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHH-HHHHHHHHT--T--EEEEESSHHHHHHHHHHHT----------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHH-HHHHHHHhC--CCeEEEECCcHHHHHHHHHhhC----------
Confidence 47899999999997643 47888999999997543 344444443 4689999999998888666531
Q ss_pred EEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccC----CCcCCcceeecchhhHHhccCcHHHHHHHHHhCCC-Cc
Q 015454 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT----LRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DL 207 (406)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~----~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~-~~ 207 (406)
+-..|-.+++....... ......+++|+||+-.+... .+..++...+. +.
T Consensus 68 ---------------------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~----~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 68 ---------------------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSR----QLARLLRLAKKSGA 122 (196)
T ss_dssp ---------------------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHH----HHHHHHHHS-T-T-
T ss_pred ---------------------cchhhHHHHHhcCCcccccccccCCcccEEEEecccccCHH----HHHHHHHHHHhcCC
Confidence 11123222221111110 01455689999999977543 45555555554 55
Q ss_pred eEEEEEec
Q 015454 208 QVVLISAT 215 (406)
Q Consensus 208 ~~i~lSAT 215 (406)
+++++.-+
T Consensus 123 klilvGD~ 130 (196)
T PF13604_consen 123 KLILVGDP 130 (196)
T ss_dssp EEEEEE-T
T ss_pred EEEEECCc
Confidence 66655544
No 182
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.52 E-value=1.9e-08 Score=97.73 Aligned_cols=132 Identities=15% Similarity=0.212 Sum_probs=100.7
Q ss_pred CChHHHHHhHHhhhc-CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEE
Q 015454 55 KPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~-~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (406)
...|.|.+.+..+.. ..++++-+|||+|||.++..++...+... ++.++.++.|.++|.....+.+.+.....++++.
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~-p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~i 1005 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY-PGSKVVYIAPDKALVKERSDDWSKRDELPGIKVI 1005 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC-CCccEEEEcCCchhhcccccchhhhcccCCceeE
Confidence 345667666665544 46789999999999999999888776554 4578999999999999988888776655588888
Q ss_pred EEECCcchHHhHHHHhcCCCEEEechHHHHHHHH--ccCCCcCCcceeecchhhHHhcc
Q 015454 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK--RKTLRTRAIKLLVLDESDEMLSR 190 (406)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~--~~~~~~~~~~~vV~DE~h~~~~~ 190 (406)
.+.|+...+.. . -...+++|+||++...... .....+++++.+|+||.|.+...
T Consensus 1006 e~tgd~~pd~~--~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1006 ELTGDVTPDVK--A-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred eccCccCCChh--h-eecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 88887765522 1 1347999999999876655 24456788999999999977544
No 183
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.50 E-value=7.3e-07 Score=73.16 Aligned_cols=144 Identities=15% Similarity=0.195 Sum_probs=71.5
Q ss_pred ChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHH-------HHHHHHhccCc
Q 015454 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT-------EKVILAIGDFI 128 (406)
Q Consensus 56 l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~-------~~~~~~~~~~~ 128 (406)
.+..|..++..+....-+++.||.|+|||+.++...+..+.. +.-.+++++-|..+..... .+.+..+....
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~ 83 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPI 83 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT----SS---------TTTHHH
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHH
Confidence 578999999999988889999999999999988888887766 4456788888866531111 11111000000
Q ss_pred ceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCce
Q 015454 129 NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (406)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~ 208 (406)
.-....+.+. .....+.....|-+.....+ +...+ + -.+||+|||+.+. ...+..++.++..+.+
T Consensus 84 ~d~l~~~~~~----~~~~~~~~~~~Ie~~~~~~i----RGrt~--~-~~~iIvDEaQN~t----~~~~k~ilTR~g~~sk 148 (205)
T PF02562_consen 84 YDALEELFGK----EKLEELIQNGKIEIEPLAFI----RGRTF--D-NAFIIVDEAQNLT----PEELKMILTRIGEGSK 148 (205)
T ss_dssp HHHHTTTS-T----TCHHHHHHTTSEEEEEGGGG----TT--B----SEEEEE-SGGG------HHHHHHHHTTB-TT-E
T ss_pred HHHHHHHhCh----HhHHHHhhcCeEEEEehhhh----cCccc--c-ceEEEEecccCCC----HHHHHHHHcccCCCcE
Confidence 0000000011 11122223345555554222 11222 1 2789999999764 4566777777777777
Q ss_pred EEEEEec
Q 015454 209 VVLISAT 215 (406)
Q Consensus 209 ~i~lSAT 215 (406)
++++.-.
T Consensus 149 ii~~GD~ 155 (205)
T PF02562_consen 149 IIITGDP 155 (205)
T ss_dssp EEEEE--
T ss_pred EEEecCc
Confidence 6655443
No 184
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.49 E-value=1.4e-06 Score=80.28 Aligned_cols=150 Identities=12% Similarity=0.146 Sum_probs=83.4
Q ss_pred EECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcc-eeEEEEECCcchH----HhHHHHh
Q 015454 75 AQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN-IQAHACVGGKSVG----EDIRKLE 149 (406)
Q Consensus 75 l~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~ 149 (406)
..++||||||++++..++.....+- ...|+.|........+...+..-..... ..-....++.... .......
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgy--r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGY--RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhch--hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccC
Confidence 5689999999988888887775543 3578888988887777655522110000 0000001111000 0001123
Q ss_pred cCCCEEEechHHHHHHHHccCC------CcCCcc-eeecchhhHHhccC-------------cHHHHHHHHHhCCCCceE
Q 015454 150 HGVHVVSGTPGRVCDMIKRKTL------RTRAIK-LLVLDESDEMLSRG-------------FKDQIYDVYRYLPPDLQV 209 (406)
Q Consensus 150 ~~~~iii~T~~~l~~~l~~~~~------~~~~~~-~vV~DE~h~~~~~~-------------~~~~~~~~~~~~~~~~~~ 209 (406)
.+..|+++|.+.|...+.+... ++.+.. +++-||+|++.... |...+....+. .++.-+
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~-nkd~~~ 158 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ-NKDNLL 158 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc-CCCcee
Confidence 4578999999999887765322 223333 46779999985431 33333333333 234446
Q ss_pred EEEEecCChHHHHHHHhcC
Q 015454 210 VLISATLPHEILEMTTKFM 228 (406)
Q Consensus 210 i~lSAT~~~~~~~~~~~~~ 228 (406)
+..|||.+. .......+-
T Consensus 159 lef~at~~k-~k~v~~ky~ 176 (812)
T COG3421 159 LEFSATIPK-EKSVEDKYE 176 (812)
T ss_pred ehhhhcCCc-cccHHHHhc
Confidence 788999873 344444443
No 185
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.48 E-value=2.3e-06 Score=70.83 Aligned_cols=129 Identities=19% Similarity=0.280 Sum_probs=86.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhc---CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcC
Q 015454 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK---GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (406)
Q Consensus 33 ~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~---~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P 109 (406)
.+|.....|+++.-+... ++ .+|+-|.+....+.+ |.+.+.+.-+|.|||.+.+..+...+..+ ..-+.+++|
T Consensus 3 ~~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg--~~LvrviVp 78 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADG--SRLVRVIVP 78 (229)
T ss_pred CCCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCC--CcEEEEEcC
Confidence 468888888999888754 55 689999999988876 57899999999999977765555544333 245778888
Q ss_pred cHHHHHHHHHHHHHh-ccCcceeEE--EEECCcchHH----hHH----HHhcCCCEEEechHHHHHHH
Q 015454 110 TRELATQTEKVILAI-GDFINIQAH--ACVGGKSVGE----DIR----KLEHGVHVVSGTPGRVCDMI 166 (406)
Q Consensus 110 ~~~l~~q~~~~~~~~-~~~~~~~~~--~~~~~~~~~~----~~~----~~~~~~~iii~T~~~l~~~l 166 (406)
++|..|....+..- +.-.+-.+. -+......+. ... .......|+++||+.+.++.
T Consensus 79 -k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 79 -KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHH
Confidence 88999998888653 222222222 2222222211 111 22345689999999887653
No 186
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.45 E-value=8e-07 Score=82.65 Aligned_cols=77 Identities=23% Similarity=0.216 Sum_probs=63.8
Q ss_pred HHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 47 GIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 47 ~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
.+...++..|+.-|..|+.+++...-.+++||+|+|||.+..-.+.+.... ....+|+++|+.--++|.++.+.+.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~tg 478 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKTG 478 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhcC
Confidence 445567889999999999999999999999999999998777655555444 34569999999999999999987654
No 187
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.33 E-value=8.5e-06 Score=78.69 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=87.0
Q ss_pred ChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhc-cCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEE
Q 015454 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVD-TSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (406)
Q Consensus 56 l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~-~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (406)
..++|+.|+...+.+.-++|.|++|+|||.+....+..... ...+..+++++.||..-+..+.+.+.......+..
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~--- 229 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT--- 229 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc---
Confidence 35899999999888888999999999999765443322222 12234578999999998988888776543222110
Q ss_pred EECCcchHHhHHHHhcCCCEEEechHHHHHHHHc------cCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCce
Q 015454 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (406)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~------~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~ 208 (406)
.... .....-..|-.+|+..... +....-.+++||+||+-.+. ...+..+++.+++..+
T Consensus 230 --------~~~~---~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~r 294 (615)
T PRK10875 230 --------DEQK---KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHAR 294 (615)
T ss_pred --------hhhh---hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCCE
Confidence 0000 0001112233333221100 11122346899999998663 3466677888888888
Q ss_pred EEEEEec
Q 015454 209 VVLISAT 215 (406)
Q Consensus 209 ~i~lSAT 215 (406)
+|++.-.
T Consensus 295 lIlvGD~ 301 (615)
T PRK10875 295 VIFLGDR 301 (615)
T ss_pred EEEecch
Confidence 8887665
No 188
>PF13245 AAA_19: Part of AAA domain
Probab=98.31 E-value=2.6e-06 Score=58.15 Aligned_cols=52 Identities=25% Similarity=0.419 Sum_probs=39.7
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhcc-CCCceeEEEEcCcHHHHHHHHHHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVI 121 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~-~~~~~~~lil~P~~~l~~q~~~~~ 121 (406)
+.-++|.+|+|||||...+-.+...+.. ...+.++++++|++..++++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3345669999999997777666666531 222668999999999999998888
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.30 E-value=4.1e-06 Score=76.34 Aligned_cols=108 Identities=13% Similarity=0.187 Sum_probs=69.3
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcC
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (406)
-++|.|.+|||||++++-.+.. +.....+.+++++++..+|.......+..... ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~-l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------------------~~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKE-LQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN----------------------PKL 59 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHH-hhccccCCceEEEEecchHHHHHHHHHhhhcc----------------------cch
Confidence 3789999999999776654433 32334456789999999999988888865320 001
Q ss_pred CCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC-------cHHHHHHHHHh
Q 015454 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-------FKDQIYDVYRY 202 (406)
Q Consensus 152 ~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~-------~~~~~~~~~~~ 202 (406)
....+..+..+.............+++|||||||.+.... ....+..+++.
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1233445555544333223445678999999999997731 23555566555
No 190
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.28 E-value=1.1e-05 Score=80.04 Aligned_cols=128 Identities=22% Similarity=0.218 Sum_probs=80.4
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.++ .+++.|++|+..+..++-+++.|++|+|||.+.- .++..+....+...+++++||-.-+..+.+... .
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~-~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g-------~ 390 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITR-AIIELAEELGGLLPVGLAAPTGRAAKRLGEVTG-------L 390 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH-HHHHHHHHcCCCceEEEEeCchHHHHHHHHhcC-------C
Confidence 344 7999999999999888889999999999996543 344444333222568889999887765544321 1
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc-----cCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCC
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-----KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~-----~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~ 205 (406)
.. .|..+++..... ........++||+||++.+... .+..+++.++.
T Consensus 391 ~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~~----~~~~Ll~~~~~ 442 (720)
T TIGR01448 391 TA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDTW----LALSLLAALPD 442 (720)
T ss_pred cc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCHH----HHHHHHHhCCC
Confidence 00 111111111000 0011234689999999987433 45666677777
Q ss_pred CceEEEEEec
Q 015454 206 DLQVVLISAT 215 (406)
Q Consensus 206 ~~~~i~lSAT 215 (406)
..+++++.-.
T Consensus 443 ~~rlilvGD~ 452 (720)
T TIGR01448 443 HARLLLVGDT 452 (720)
T ss_pred CCEEEEECcc
Confidence 7887776655
No 191
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.24 E-value=1.6e-05 Score=76.66 Aligned_cols=141 Identities=17% Similarity=0.206 Sum_probs=85.3
Q ss_pred hHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhh--ccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEE
Q 015454 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV--DTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (406)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~--~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (406)
.++|+.|+...+.+.-+++.|++|+|||.+....+.... .....+.++++++||-.-+..+.+.+..........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~--- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA--- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc---
Confidence 379999999999999999999999999976544332221 111112579999999988888887775533221110
Q ss_pred EECCcchHHhHHHHhcCCCEEEechHHHHHHHHc------cCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCce
Q 015454 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (406)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~------~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~ 208 (406)
. .. .....+-..|-.+|+..... +......+++||+||+-.+.. ..+..+++.+++..+
T Consensus 224 ----~---~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~----~l~~~ll~al~~~~r 288 (586)
T TIGR01447 224 ----E---AL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL----PLMAKLLKALPPNTK 288 (586)
T ss_pred ----h---hh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH----HHHHHHHHhcCCCCE
Confidence 0 00 00011112333333322110 111223578999999986642 356677778888888
Q ss_pred EEEEEec
Q 015454 209 VVLISAT 215 (406)
Q Consensus 209 ~i~lSAT 215 (406)
+|++.-.
T Consensus 289 lIlvGD~ 295 (586)
T TIGR01447 289 LILLGDK 295 (586)
T ss_pred EEEECCh
Confidence 7776554
No 192
>PRK10536 hypothetical protein; Provisional
Probab=98.23 E-value=2.5e-05 Score=66.09 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=79.3
Q ss_pred CCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHH-----------HHHHHH
Q 015454 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA-----------TQTEKV 120 (406)
Q Consensus 52 ~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~-----------~q~~~~ 120 (406)
++.-.+..|...+..+.++..+++.||+|+|||+.+.......+..+ .-.++++.=|..... +.+..+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~ 134 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQADEDLGFLPGDIAEKFAPY 134 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCCchhhhCcCCCCHHHHHHHH
Confidence 44456789999999998888899999999999988877776655443 244566666654321 111111
Q ss_pred HHHhccCcceeEEEEECCcchHHhHHHH--hcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHH
Q 015454 121 ILAIGDFINIQAHACVGGKSVGEDIRKL--EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYD 198 (406)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~ 198 (406)
+..+.+.... +.+.. ..... .....|-|... .+++...+. -++||+||++.+.. .++..
T Consensus 135 ~~pi~D~L~~----~~~~~----~~~~~~~~~~~~Iei~~l----~ymRGrtl~---~~~vIvDEaqn~~~----~~~k~ 195 (262)
T PRK10536 135 FRPVYDVLVR----RLGAS----FMQYCLRPEIGKVEIAPF----AYMRGRTFE---NAVVILDEAQNVTA----AQMKM 195 (262)
T ss_pred HHHHHHHHHH----HhChH----HHHHHHHhccCcEEEecH----HHhcCCccc---CCEEEEechhcCCH----HHHHH
Confidence 2221111100 01111 11111 11233444443 333333332 37999999997643 56667
Q ss_pred HHHhCCCCceEEE
Q 015454 199 VYRYLPPDLQVVL 211 (406)
Q Consensus 199 ~~~~~~~~~~~i~ 211 (406)
++.++..+.++++
T Consensus 196 ~ltR~g~~sk~v~ 208 (262)
T PRK10536 196 FLTRLGENVTVIV 208 (262)
T ss_pred HHhhcCCCCEEEE
Confidence 7777777776554
No 193
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.13 E-value=1.4e-05 Score=74.09 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=54.7
Q ss_pred CChHHHHHhHHhhhcCC-cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHH
Q 015454 55 KPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~-~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 122 (406)
.+.+-|++|+......+ -.+++||+|+|||.+....+.+.+.. +.++|+..||..-+++..+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---CCeEEEEcCchHHHHHHHHHhc
Confidence 67889999999888774 47999999999999888877777754 3579999999999999988753
No 194
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=98.11 E-value=2.2e-05 Score=60.99 Aligned_cols=95 Identities=13% Similarity=0.203 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCCc---eEEEeecCCCHHHHHHHHHHHhcCCC---cEEEEcCc--ccCCCCCCC--CCEEEEecCCCCh-
Q 015454 285 VDWLTEKMRGYNF---TVSSMHGDMPQKERDAIMGEFRSGTT---RVLITTDV--WARGLDVQQ--VSLVINYDLPNNR- 353 (406)
Q Consensus 285 ~~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~--~~~G~d~~~--~~~vi~~~~~~s~- 353 (406)
.+.+.+.+...+. ...++....+..+...+++.|++..- .||+++.. +.+|+|+|+ ++.||+.+.|...
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 3445555554432 12233333333355788888876543 68888876 999999996 6789998887421
Q ss_pred ------------------------------hhhHhhhhhccCCCCceeEEEEeccC
Q 015454 354 ------------------------------ELYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 354 ------------------------------~~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
....|.+||+-|...+.-++++++++
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~R 139 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDKR 139 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEecc
Confidence 11459999999998776667776653
No 195
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.10 E-value=2.5e-05 Score=75.51 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=51.7
Q ss_pred CChHHHHHhHHhhhc----CCcEEEECCCCCChhhHhHHHHHhhhccC--------------------------------
Q 015454 55 KPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTS-------------------------------- 98 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~----~~~~il~~~tGsGKT~~~~~~i~~~~~~~-------------------------------- 98 (406)
+||+.|......++. +.+.++..|||+|||+..+-..+++...-
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 789999877776654 57899999999999987765555443100
Q ss_pred -C------CceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 99 -S------REVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 99 -~------~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
. ..++++|-+-|-.-..|+.+++++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 0 13457777778888888888887654
No 196
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.08 E-value=4.1e-05 Score=59.40 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=56.5
Q ss_pred EeecCCCHHHHHHHHHHHhcCC-CcEEEEcCcccCCCCCCC--CCEEEEecCCCC-h-----------------------
Q 015454 301 SMHGDMPQKERDAIMGEFRSGT-TRVLITTDVWARGLDVQQ--VSLVINYDLPNN-R----------------------- 353 (406)
Q Consensus 301 ~~~~~~~~~~r~~~~~~f~~~~-~~vli~t~~~~~G~d~~~--~~~vi~~~~~~s-~----------------------- 353 (406)
++....+..+...+++.|++.. ..||+++..+.+|+|+|+ ++.||+.+.|.. +
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDF 105 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhH
Confidence 3444455556788899998654 379999988999999996 678999887742 1
Q ss_pred -------hhhHhhhhhccCCCCceeEEEEecc
Q 015454 354 -------ELYIHRIGRSGRFGRKGVAINFVKN 378 (406)
Q Consensus 354 -------~~~~Q~~GR~~R~~~~~~~~~~~~~ 378 (406)
....|.+||+-|...+.-+++++++
T Consensus 106 ~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 106 VSLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 2245888999998777556666654
No 197
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.03 E-value=2.7e-05 Score=66.45 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=41.6
Q ss_pred CCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecC---ChHHHHHHHhcCCC
Q 015454 171 LRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL---PHEILEMTTKFMTD 230 (406)
Q Consensus 171 ~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~---~~~~~~~~~~~~~~ 230 (406)
...+.+++||+||||.+....+ ..+.+.++..+...++++++.-+ +..+...+..+...
T Consensus 125 ~~~~~fKiiIlDEcdsmtsdaq-~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk 186 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDAQ-AALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFK 186 (346)
T ss_pred CCCCcceEEEEechhhhhHHHH-HHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCC
Confidence 3446689999999999987654 46677777777788888888775 34445555555433
No 198
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.98 E-value=1.8e-05 Score=71.28 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=77.4
Q ss_pred ChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC-CCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEE
Q 015454 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (406)
Q Consensus 56 l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (406)
|++-|.+++.. ..++++|.|++|||||.+.+.-+...+... ....++|++++|+..+.++.+++..........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~--- 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQE--- 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC---
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccc---
Confidence 57889999987 668899999999999998887777766554 456689999999999999999998754221100
Q ss_pred EECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCc--CCcceeecchhh
Q 015454 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRT--RAIKLLVLDESD 185 (406)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~--~~~~~vV~DE~h 185 (406)
................+.|+|...+...+.+..... -.-.+-+.|+..
T Consensus 76 ---~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 ---SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ---CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ---ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 000001111222345788999888875443321111 123456666665
No 199
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.91 E-value=0.00015 Score=72.42 Aligned_cols=122 Identities=19% Similarity=0.159 Sum_probs=73.9
Q ss_pred CChHHHHHhHHhhhcC-CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEE
Q 015454 55 KPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~-~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (406)
.|++-|++|+..+..+ +-++|.|++|+|||.+.-. +...+.. .+.++++++||-.-+..+.+.. +..
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~-i~~~~~~--~g~~V~~~ApTg~Aa~~L~~~~-------g~~-- 419 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKA-AREAWEA--AGYRVIGAALSGKAAEGLQAES-------GIE-- 419 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHH-HHHHHHh--CCCeEEEEeCcHHHHHHHHhcc-------CCc--
Confidence 6899999999998874 5679999999999965443 4443333 2567999999877666554321 111
Q ss_pred EEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHH-hCCCCceEEEE
Q 015454 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR-YLPPDLQVVLI 212 (406)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~-~~~~~~~~i~l 212 (406)
-.|-.++...+..........++||+||+-.+....+. .++. ....+.++|++
T Consensus 420 ----------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~~~~----~Ll~~~~~~~~kliLV 473 (744)
T TIGR02768 420 ----------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSRQMA----RVLKEAEEAGAKVVLV 473 (744)
T ss_pred ----------------------eeeHHHHHhhhccCcccCCCCcEEEEECcccCCHHHHH----HHHHHHHhcCCEEEEE
Confidence 11222222111222223456789999999977544433 3333 22245666665
Q ss_pred Ee
Q 015454 213 SA 214 (406)
Q Consensus 213 SA 214 (406)
.-
T Consensus 474 GD 475 (744)
T TIGR02768 474 GD 475 (744)
T ss_pred CC
Confidence 53
No 200
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.84 E-value=0.00015 Score=73.51 Aligned_cols=126 Identities=20% Similarity=0.131 Sum_probs=76.5
Q ss_pred CCCCCChHHHHHhHHhhhcCC-cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcc
Q 015454 51 YGFEKPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~-~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (406)
.|+ .|++-|.+++..++.+. -+++.|+.|+|||.+ +-.+...+.. .+.+++.++||-.-+..+.+. .+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--~G~~V~~~ApTGkAA~~L~e~-------tG 411 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--AGYEVRGAALSGIAAENLEGG-------SG 411 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--cCCeEEEecCcHHHHHHHhhc-------cC
Confidence 344 69999999999999865 479999999999975 3334444332 256799999988766554321 11
Q ss_pred eeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhC-CCCce
Q 015454 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQ 208 (406)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~-~~~~~ 208 (406)
+. -.|-.+|..............++||+||+-.+.... +..+++.. +.+.+
T Consensus 412 i~------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~~----m~~LL~~a~~~gar 463 (988)
T PRK13889 412 IA------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTRQ----LERVLSHAADAGAK 463 (988)
T ss_pred cc------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCCHHH----HHHHHHhhhhCCCE
Confidence 11 112223322111222234557899999999765443 33444322 35666
Q ss_pred EEEEEec
Q 015454 209 VVLISAT 215 (406)
Q Consensus 209 ~i~lSAT 215 (406)
+|++.-+
T Consensus 464 vVLVGD~ 470 (988)
T PRK13889 464 VVLVGDP 470 (988)
T ss_pred EEEECCH
Confidence 7766655
No 201
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.75 E-value=8.5e-05 Score=57.29 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=23.2
Q ss_pred ceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecC
Q 015454 177 KLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (406)
Q Consensus 177 ~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 216 (406)
.+||+||+|.+. . ...+..+........-.+++++++
T Consensus 89 ~~lviDe~~~l~--~-~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--S-DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--T-HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--C-HHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999974 1 445555544444444446666664
No 202
>PRK08181 transposase; Validated
Probab=97.72 E-value=0.0007 Score=58.71 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=33.3
Q ss_pred hHHHHHhHH----hhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHH
Q 015454 57 SAIQQRAVM----PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (406)
Q Consensus 57 ~~~Q~~~~~----~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~ 117 (406)
...|..++. .+..+.++++.||+|+|||..+.......... +..++++ +...|..+.
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~---g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN---GWRVLFT-RTTDLVQKL 149 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc---CCceeee-eHHHHHHHH
Confidence 445554443 33467889999999999996555433333322 3345444 445555554
No 203
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.70 E-value=0.00013 Score=62.60 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=60.8
Q ss_pred HHHHHHhcCCCcEEEEcCcccCCCCCC--------CCCEEEEecCCCChhhhHhhhhhccCCCCc-eeEEEEeccCcHHH
Q 015454 313 AIMGEFRSGTTRVLITTDVWARGLDVQ--------QVSLVINYDLPNNRELYIHRIGRSGRFGRK-GVAINFVKNDDIKI 383 (406)
Q Consensus 313 ~~~~~f~~~~~~vli~t~~~~~G~d~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~-~~~~~~~~~~~~~~ 383 (406)
...+.|.+|+.+|+|.+.+.+.|+.+- .-++-|.+.+||+....+|..||++|.|+. .+.+.++..+ ...
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~-~~g 130 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTD-LPG 130 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecC-CHH
Confidence 556789999999999999999999874 234567899999999999999999999986 4445544443 333
Q ss_pred HHHHHHHHccccc
Q 015454 384 LRDIEQYYSTQID 396 (406)
Q Consensus 384 ~~~~~~~~~~~~~ 396 (406)
-+.+......+++
T Consensus 131 E~Rfas~va~rL~ 143 (278)
T PF13871_consen 131 ERRFASTVARRLE 143 (278)
T ss_pred HHHHHHHHHHHHh
Confidence 2344444443333
No 204
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.68 E-value=0.00058 Score=69.96 Aligned_cols=137 Identities=18% Similarity=0.167 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHhHHhhhc-CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHH
Q 015454 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (406)
Q Consensus 40 l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~-~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~ 118 (406)
.++....+....++ .|++-|.+++..+.. ++-.+|.|+.|+|||.+.-. +...+.. .+.+++.++||-.-+..+.
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~-~~~~~e~--~G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKA-AREAWEA--AGYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHH-HHHHHHH--cCCeEEEEcCcHHHHHHHH
Confidence 34444444434344 799999999998865 35589999999999965443 4443332 2567899999877665554
Q ss_pred HHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHH
Q 015454 119 KVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYD 198 (406)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~ 198 (406)
+.. ++. -.|-.++..........+..-++||+||+..+.... +..
T Consensus 443 e~~-------Gi~------------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~~~----m~~ 487 (1102)
T PRK13826 443 KEA-------GIQ------------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVASRQ----MAL 487 (1102)
T ss_pred Hhh-------CCC------------------------eeeHHHHHhhhccCccCCCCCcEEEEECcccCCHHH----HHH
Confidence 321 111 122222211111122234556799999999775443 333
Q ss_pred HHHhCC-CCceEEEEEec
Q 015454 199 VYRYLP-PDLQVVLISAT 215 (406)
Q Consensus 199 ~~~~~~-~~~~~i~lSAT 215 (406)
+++... .+.+++++.-+
T Consensus 488 Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 488 FVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHhcCCEEEEECCH
Confidence 444332 45667766655
No 205
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.59 E-value=0.0003 Score=70.91 Aligned_cols=145 Identities=15% Similarity=0.034 Sum_probs=88.7
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccC---------------CCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEE
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTS---------------SREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~---------------~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (406)
|+.++..-..|+|||...+...+...... ...+.+||+|| .++..||.+++.+..... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P-~aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP-NAILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECc-HHHHHHHHHHHHHhcccc-ceEEE
Confidence 46678889999999976654443332111 11234899999 889999999998876443 56666
Q ss_pred EECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCC--------------Cc------CCcceeecchhhHHhccCcHH
Q 015454 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL--------------RT------RAIKLLVLDESDEMLSRGFKD 194 (406)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~--------------~~------~~~~~vV~DE~h~~~~~~~~~ 194 (406)
..|-.+...........+||++|||+.|..-+..... .. -.+--|++||++.+-.. ..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess--sS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS--SS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--HH
Confidence 5553222111112224489999999998765543211 11 11235999999987552 23
Q ss_pred HHHHHHHhCCCCceEEEEEecCChH
Q 015454 195 QIYDVYRYLPPDLQVVLISATLPHE 219 (406)
Q Consensus 195 ~~~~~~~~~~~~~~~i~lSAT~~~~ 219 (406)
.......+++. ....++|+||-..
T Consensus 530 ~~a~M~~rL~~-in~W~VTGTPiq~ 553 (1394)
T KOG0298|consen 530 AAAEMVRRLHA-INRWCVTGTPIQK 553 (1394)
T ss_pred HHHHHHHHhhh-hceeeecCCchhh
Confidence 33444444433 3368899997544
No 206
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.59 E-value=0.00023 Score=69.79 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=55.0
Q ss_pred CCChHHHHHhHHhhhcC-CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015454 54 EKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (406)
Q Consensus 54 ~~l~~~Q~~~~~~i~~~-~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (406)
..+++.|.+|+..++.. ..++|.||+|+|||.+..-.+...+.. +.++|+++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEEcCcHHHHHHHHHHHHh
Confidence 35799999999998876 678999999999997776655555433 34799999999999999998876
No 207
>PRK06526 transposase; Provisional
Probab=97.59 E-value=0.00062 Score=58.67 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=21.5
Q ss_pred hhhcCCcEEEECCCCCChhhHhHHHHHhhh
Q 015454 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (406)
Q Consensus 66 ~i~~~~~~il~~~tGsGKT~~~~~~i~~~~ 95 (406)
.+..+.++++.||+|+|||..+........
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 344568999999999999976654433333
No 208
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.56 E-value=0.00045 Score=67.85 Aligned_cols=124 Identities=19% Similarity=0.234 Sum_probs=81.3
Q ss_pred CCChHHHHHhHHhhhcCCc-EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeE
Q 015454 54 EKPSAIQQRAVMPIIKGRD-VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (406)
Q Consensus 54 ~~l~~~Q~~~~~~i~~~~~-~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (406)
..|+.-|++|+..++..++ .++.|=+|+|||.+....+-..... +.++|+.+=|..-+++..-.++.+. +.+
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~---gkkVLLtsyThsAVDNILiKL~~~~----i~~ 740 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL---GKKVLLTSYTHSAVDNILIKLKGFG----IYI 740 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc---CCeEEEEehhhHHHHHHHHHHhccC----cce
Confidence 3689999999998887655 6899999999997766555444333 4568998888888888887776654 222
Q ss_pred EEEECCcchH-----------------HhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHh
Q 015454 133 HACVGGKSVG-----------------EDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (406)
Q Consensus 133 ~~~~~~~~~~-----------------~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~ 188 (406)
..+..+.... ...+...+...|+.+|.-.+.+. .+..+.|++.|+|||-.+.
T Consensus 741 lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p----lf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 741 LRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP----LFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred eecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch----hhhccccCEEEEccccccc
Confidence 2222221111 12223334567777775443332 2335668999999998864
No 209
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.56 E-value=0.0006 Score=59.90 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=48.1
Q ss_pred CCCCCChHHHHHhHHhhhcC--CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHH
Q 015454 51 YGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~--~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~ 114 (406)
+|+.-.+..|.-|+..++.. .=+.+.|+.|||||+.++.+.+......+.-.++++.=|+-.+.
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 46755567888888888874 34789999999999888877777766666666788877766543
No 210
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.54 E-value=0.00037 Score=69.97 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=58.4
Q ss_pred CCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc-CCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 54 ~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
..|++-|++++.+. ..+++|.|++|||||.+...-+...+.. +-+..++|+++-|+..+.++.+++.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 36899999999753 4679999999999999888777777653 3456689999999999999999998864
No 211
>PRK04296 thymidine kinase; Provisional
Probab=97.50 E-value=0.0002 Score=59.10 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=24.2
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcC
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P 109 (406)
-.++.||+|+|||..++-.+...... +.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 36889999999997666555444333 456777766
No 212
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.48 E-value=0.0004 Score=69.69 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=57.7
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc-CCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
.|++-|.+++.+. ..+++|.|++|||||.+...-+...+.. +-+..++|+++-|+..+.++.+++.++.
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 5899999999753 4679999999999998888777777643 4456689999999999999999998864
No 213
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.0014 Score=59.87 Aligned_cols=121 Identities=18% Similarity=0.153 Sum_probs=65.0
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccC-CCceeEE-EEcCc-HHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHH
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQAL-ILSPT-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~-~~~~~~l-il~P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (406)
..+++.||||+|||.+....+....... ..+.++. +-+.+ +.-+.+ ++..++...++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~-------------- 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVK-------------- 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceE--------------
Confidence 4588999999999987765443332221 1233344 43433 222222 24444444334321
Q ss_pred HhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC-cHHHHHHHHHhCCCC-ceEEEEEecCChH
Q 015454 148 LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPPD-LQVVLISATLPHE 219 (406)
Q Consensus 148 ~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~-~~~~~~~~~~~~~~~-~~~i~lSAT~~~~ 219 (406)
.+.+++.+...+.. ..+.++|++|++....... .-..+..++....+. -.++.+|||....
T Consensus 238 -------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 238 -------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred -------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 12244555544433 3468999999998764321 123444455544322 4579999998654
No 214
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.46 E-value=0.0016 Score=51.11 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=15.8
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
+..+++.||+|+|||..+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999995444
No 215
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.40 E-value=0.00047 Score=53.73 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=25.4
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l 113 (406)
+..+++.||+|+|||..... +...+.... ..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~~--~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPPG--GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCCC--CCEEEECCEEcc
Confidence 46789999999999965543 333332221 246777775543
No 216
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.39 E-value=0.00033 Score=69.43 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=57.4
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc-CCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
.|++-|.+++.+. ..+++|.|++|||||.+...-+...+.. +-+..++|+++-|+..+.++.+++....
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4789999999763 4678999999999999888877777753 4455689999999999999999998754
No 217
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.29 E-value=0.00085 Score=56.63 Aligned_cols=105 Identities=18% Similarity=0.317 Sum_probs=60.1
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcC
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (406)
.+++.||+|+|||- .+.++.+.+....++.+++++.. .+........+..
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~~~~~~~~v~y~~~-~~f~~~~~~~~~~---------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQKQHPGKRVVYLSA-EEFIREFADALRD---------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHHCTTS-EEEEEH-HHHHHHHHHHHHT----------------------------
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHHhccccccceeecH-HHHHHHHHHHHHc----------------------------
Confidence 48999999999996 34455555544444566777665 3444443333322
Q ss_pred CCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC-cHHHHHHHHHhCC-CCceEEEEEecCCh
Q 015454 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLP-PDLQVVLISATLPH 218 (406)
Q Consensus 152 ~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~-~~~~~~~~~~~~~-~~~~~i~lSAT~~~ 218 (406)
...+.+.+. ..+.+++++|++|.+.... +...+..+++.+. .+.++++.|..+|.
T Consensus 86 -----~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 86 -----GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPS 142 (219)
T ss_dssp -----TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TT
T ss_pred -----ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCc
Confidence 122333332 2357999999999986542 3445555555443 34566665555544
No 218
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.26 E-value=0.0012 Score=65.29 Aligned_cols=79 Identities=23% Similarity=0.236 Sum_probs=59.0
Q ss_pred CCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC-CCceeEEEEcCcHHHHHHHHHHHHHhccCcceeE
Q 015454 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (406)
Q Consensus 54 ~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (406)
..|++-|++++.. ...+++|.|+.|||||.+..--+...+... ..+.++|+++.++..+..+.+++.......++.+
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~~v~v 272 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTEDITA 272 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCCCcEE
Confidence 4699999999864 335689999999999988777666655432 3456899999999999999999876543333444
Q ss_pred EE
Q 015454 133 HA 134 (406)
Q Consensus 133 ~~ 134 (406)
.+
T Consensus 273 ~T 274 (684)
T PRK11054 273 RT 274 (684)
T ss_pred Ee
Confidence 33
No 219
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=97.22 E-value=0.0017 Score=64.91 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=56.5
Q ss_pred ChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc-CCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 56 l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
|++-|++++.+ ...+++|.|++|||||.+...-+...+.. +.+..++|+++.|+..+.++.+++.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 78999999875 34689999999999999888888777753 3355679999999999999999998754
No 220
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.22 E-value=0.0011 Score=63.81 Aligned_cols=156 Identities=23% Similarity=0.226 Sum_probs=95.7
Q ss_pred CCCChHHHHHhHHhhhc--------CC--cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHH
Q 015454 53 FEKPSAIQQRAVMPIIK--------GR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (406)
Q Consensus 53 ~~~l~~~Q~~~~~~i~~--------~~--~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 122 (406)
...+...|.+++-..+. |. .+++-.+.|.||-.+..-.|+.....+ .+++||+.-+..|--+..+.+.
T Consensus 262 sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG--RKrAlW~SVSsDLKfDAERDL~ 339 (1300)
T KOG1513|consen 262 SGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG--RKRALWFSVSSDLKFDAERDLR 339 (1300)
T ss_pred ccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc--cceeEEEEeccccccchhhchh
Confidence 34688999998865543 22 367777778777655554455555554 4579999999999888888887
Q ss_pred HhccCcceeEEEEE----CCcchHHhHHHHhcCCCEEEechHHHHHHHHcc------------CCCcCC-cceeecchhh
Q 015454 123 AIGDFINIQAHACV----GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK------------TLRTRA-IKLLVLDESD 185 (406)
Q Consensus 123 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~------------~~~~~~-~~~vV~DE~h 185 (406)
..+.. ++.+..+. +..+..+. -.-.-.++++||..|.---... .|.-.+ =++|||||||
T Consensus 340 DigA~-~I~V~alnK~KYakIss~en---~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECH 415 (1300)
T KOG1513|consen 340 DIGAT-GIAVHALNKFKYAKISSKEN---TNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECH 415 (1300)
T ss_pred hcCCC-Cccceehhhccccccccccc---CCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhh
Confidence 76632 24433321 11111010 0112479999997775221110 011111 2589999999
Q ss_pred HHhcc---------CcHHHHHHHHHhCCCCceEEEEEec
Q 015454 186 EMLSR---------GFKDQIYDVYRYLPPDLQVVLISAT 215 (406)
Q Consensus 186 ~~~~~---------~~~~~~~~~~~~~~~~~~~i~lSAT 215 (406)
...+. ..+..+..+.+.+| +.+++.-|||
T Consensus 416 kAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASAT 453 (1300)
T KOG1513|consen 416 KAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASAT 453 (1300)
T ss_pred hhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeecc
Confidence 87552 14566777777775 6779999999
No 221
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.22 E-value=0.002 Score=68.42 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=80.6
Q ss_pred ChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEE
Q 015454 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (406)
Q Consensus 56 l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (406)
+++-|.+++. ..+.+++|.|+.|||||.+..--++..+..+....++++++=|++.+.++.+++.+.....-.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~----- 74 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQ----- 74 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHh-----
Confidence 5889999997 468899999999999999888777777655544457999999999999999988764321100
Q ss_pred ECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcC--CcceeecchhhH
Q 015454 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTR--AIKLLVLDESDE 186 (406)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~--~~~~vV~DE~h~ 186 (406)
.........+.+..-...-|+|...|...+.+.....- +..+=|.||...
T Consensus 75 -~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 75 -QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred -cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00011111122223346678999998765544332221 123345887765
No 222
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.17 E-value=0.0034 Score=59.45 Aligned_cols=49 Identities=8% Similarity=0.213 Sum_probs=29.1
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHH
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (406)
..+++.||+|+|||..+.. +.+.+....++.+++++.. ..+..+....+
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~~~~~~v~yi~~-~~~~~~~~~~~ 197 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEKNPNAKVVYVTS-EKFTNDFVNAL 197 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 3589999999999965443 4444443333455666644 45554443333
No 223
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.14 E-value=2.7e-05 Score=74.78 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=54.2
Q ss_pred cceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhc---CCCcEEEEcCcccCC
Q 015454 273 TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS---GTTRVLITTDVWARG 335 (406)
Q Consensus 273 ~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---~~~~vli~t~~~~~G 335 (406)
.|++||.+-.+..+.+...+...+ ....+.|......|+..+.+|+. .+...|.+|.+.+.|
T Consensus 632 hrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 632 HRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 599999999999999999998888 88899999999999999999973 456788899887655
No 224
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.06 E-value=0.0039 Score=58.27 Aligned_cols=43 Identities=12% Similarity=0.282 Sum_probs=26.5
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHH
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q 116 (406)
.+++.||+|+|||.... ++.+.+....++.+++++.. ..+..+
T Consensus 138 ~l~l~G~~G~GKThL~~-ai~~~l~~~~~~~~v~yi~~-~~~~~~ 180 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLH-AIGNEILENNPNAKVVYVSS-EKFTND 180 (405)
T ss_pred eEEEECCCCCcHHHHHH-HHHHHHHHhCCCCcEEEEEH-HHHHHH
Confidence 47899999999996543 34444443333456777643 344333
No 225
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.04 E-value=0.035 Score=61.64 Aligned_cols=135 Identities=14% Similarity=0.186 Sum_probs=80.9
Q ss_pred CChHHHHHhHHhhhcC--CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeE
Q 015454 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~--~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (406)
.|++-|.+++..++.. +-.+|.|+.|+|||.+.- .+...+.. .+.+++.++|+..-+..+.+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~-~l~~~~~~--~G~~V~~lAPTgrAA~~L~e~~g~~A------- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQ-LLLHLASE--QGYEIQIITAGSLSAQELRQKIPRLA------- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH-HHHHHHHh--cCCeEEEEeCCHHHHHHHHHHhcchh-------
Confidence 5889999999998875 457999999999995543 34444333 25679999999987777766532211
Q ss_pred EEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhC-CCCceEEE
Q 015454 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVL 211 (406)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~ 211 (406)
............ ..-..|.+.|. +....+..-++|||||+-.+... .+..+++.. +.+.++|+
T Consensus 499 ------~Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~~----~~~~Ll~~a~~~garvVl 562 (1960)
T TIGR02760 499 ------STFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSNN----ELLKLIDKAEQHNSKLIL 562 (1960)
T ss_pred ------hhHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCCHH----HHHHHHHHHhhcCCEEEE
Confidence 000111111111 11122333332 22233456789999999976544 344444433 35778887
Q ss_pred EEec
Q 015454 212 ISAT 215 (406)
Q Consensus 212 lSAT 215 (406)
+.-+
T Consensus 563 vGD~ 566 (1960)
T TIGR02760 563 LNDS 566 (1960)
T ss_pred EcCh
Confidence 7766
No 226
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.02 E-value=0.005 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=17.7
Q ss_pred cCCcEEEECCCCCChhhHhHHHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTV 91 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i 91 (406)
.+.++++.||+|+|||..+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 35679999999999996655433
No 227
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.97 E-value=0.01 Score=48.81 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=33.4
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
+++.||+|+|||...+-.+...+.. +.+++|++. .+...++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 6899999999997666555554432 445777765 555677777666654
No 228
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.97 E-value=0.00069 Score=54.32 Aligned_cols=124 Identities=15% Similarity=0.192 Sum_probs=53.1
Q ss_pred EEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCC
Q 015454 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVH 153 (406)
Q Consensus 74 il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (406)
++.|+-|-|||.+.-+.+...+..+ ..++++.+|+.+-++...+.+.......+.+....... ............
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~--~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG--KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-----------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc--CceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccccccccce
Confidence 5789999999966555444444333 25799999999988887776655443333322000000 000001112356
Q ss_pred EEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCC
Q 015454 154 VVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 217 (406)
Q Consensus 154 iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 217 (406)
|-+..|+.+... ....+++|||||=.+- ...+..+.+. ...+++|.|..
T Consensus 76 i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~----~~~vv~stTi~ 124 (177)
T PF05127_consen 76 IEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRR----FPRVVFSTTIH 124 (177)
T ss_dssp --B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCC----SSEEEEEEEBS
T ss_pred EEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhh----CCEEEEEeecc
Confidence 667777666532 2235899999997542 3344555433 22567788863
No 229
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.97 E-value=0.0037 Score=63.04 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=57.9
Q ss_pred CCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc-CCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 54 ~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
..|++-|.+++.+. ..+++|.|+.|||||.+...-+...+.. +-...++|.++-|+..+.++.+++.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 35899999999753 4679999999999999888877777753 3345679999999999999999998764
No 230
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.96 E-value=0.0079 Score=56.55 Aligned_cols=45 Identities=11% Similarity=0.288 Sum_probs=27.7
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHH
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~ 117 (406)
..+++.||+|+|||..+. ++.+.+....++.+++++.. ..+..+.
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~-~~f~~~~ 175 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS-EKFLNDL 175 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH-HHHHHHH
Confidence 358999999999996544 34444444334456777754 3333333
No 231
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.96 E-value=0.0052 Score=57.85 Aligned_cols=108 Identities=10% Similarity=0.201 Sum_probs=59.4
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhc
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (406)
..+++.|++|+|||... .++.+.+....++.+++++.+ ..+..+....+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~~~~------------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDILQKTH------------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHHhh-------------------------
Confidence 34889999999999544 345555444444566777665 555555554442200
Q ss_pred CCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC-cHHHHHHHHHhCCCCceEEEEEecCCh
Q 015454 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPPDLQVVLISATLPH 218 (406)
Q Consensus 151 ~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~lSAT~~~ 218 (406)
...+.+... ..+.+++|+||+|.+.... ....+..+++.+......+++|+..++
T Consensus 195 ------~~~~~~~~~-------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 195 ------KEIEQFKNE-------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred ------hHHHHHHHH-------hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 011122221 2357899999999875432 234444554444332223555655444
No 232
>PRK05642 DNA replication initiation factor; Validated
Probab=96.92 E-value=0.0035 Score=53.57 Aligned_cols=44 Identities=16% Similarity=0.399 Sum_probs=29.4
Q ss_pred CcceeecchhhHHhcc-CcHHHHHHHHHhCCCCceEEEEEecCCh
Q 015454 175 AIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPH 218 (406)
Q Consensus 175 ~~~~vV~DE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT~~~ 218 (406)
+.+++++|++|.+... .+...+..+++.+....+.+++|++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4578999999987543 3445566777666554445677777554
No 233
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.011 Score=47.55 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=60.1
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcC
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (406)
=.++.+|++||||.-.+..+.+... .+.++++..|... ...+.....-..|.+.
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~---~g~~v~vfkp~iD-------------~R~~~~~V~Sr~G~~~---------- 59 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKE---AGMKVLVFKPAID-------------TRYGVGKVSSRIGLSS---------- 59 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHH---cCCeEEEEecccc-------------cccccceeeeccCCcc----------
Confidence 3588999999999766554444433 3456899999332 1212222222222221
Q ss_pred CCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHh
Q 015454 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 202 (406)
Q Consensus 152 ~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~ 202 (406)
..+.|-.+..+...+........ .++|.+|||+-+.. .....+..+...
T Consensus 60 ~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~~-~~v~~l~~lad~ 108 (201)
T COG1435 60 EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFDE-ELVYVLNELADR 108 (201)
T ss_pred cceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCCH-HHHHHHHHHHhh
Confidence 34566677777777665444332 78999999996543 334455555554
No 234
>PRK14974 cell division protein FtsY; Provisional
Probab=96.91 E-value=0.013 Score=52.56 Aligned_cols=129 Identities=20% Similarity=0.310 Sum_probs=69.4
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCc---HHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT---RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~---~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (406)
-+++.|++|+|||.+....+. .+.. .+.+++++... ..-..|+......+ ++.+.....+.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~-~l~~--~g~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g~--------- 205 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAY-YLKK--NGFSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYGA--------- 205 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HHHH--cCCeEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCCC---------
Confidence 378999999999976655443 3322 23355555442 34445554444333 23222111111
Q ss_pred hcCCCEEEechHH-HHHHHHccCCCcCCcceeecchhhHHhc-cCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHh
Q 015454 149 EHGVHVVSGTPGR-VCDMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTK 226 (406)
Q Consensus 149 ~~~~~iii~T~~~-l~~~l~~~~~~~~~~~~vV~DE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~ 226 (406)
.|.. +...+... .....++|++|.++.... ......+..+.+...+...++.++|+...+.......
T Consensus 206 ---------dp~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~ 274 (336)
T PRK14974 206 ---------DPAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE 274 (336)
T ss_pred ---------CHHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH
Confidence 1111 11211111 123468999999997753 2344555666666667777889999987665555544
Q ss_pred c
Q 015454 227 F 227 (406)
Q Consensus 227 ~ 227 (406)
+
T Consensus 275 f 275 (336)
T PRK14974 275 F 275 (336)
T ss_pred H
Confidence 4
No 235
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.90 E-value=0.012 Score=47.03 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=23.6
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
+++.|++|+|||..+...+..... .+..++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcc
Confidence 689999999999765544333322 2445666666444
No 236
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.88 E-value=0.011 Score=50.52 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=21.7
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEE
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil 107 (406)
..+++.|++|+|||..+.. +...+... +..++++
T Consensus 100 ~~~~l~G~~GtGKThLa~a-ia~~l~~~--g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA-ICNELLLR--GKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHhc--CCeEEEE
Confidence 4689999999999965554 33333332 3345555
No 237
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.0068 Score=54.43 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=28.8
Q ss_pred CChHHHHHhHHhhhcCC----cEEEECCCCCChhhHhHHH
Q 015454 55 KPSAIQQRAVMPIIKGR----DVIAQAQSGTGKTSMIALT 90 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~----~~il~~~tGsGKT~~~~~~ 90 (406)
.++|||...|..+...+ ..++.||.|.|||..+...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~ 42 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL 42 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH
Confidence 46899999999988643 3789999999999665543
No 238
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.84 E-value=0.0027 Score=60.52 Aligned_cols=147 Identities=14% Similarity=0.111 Sum_probs=81.4
Q ss_pred HHHHHhHHhhhc-----C----CcEEEECCCCCChhhHhHHHHHhhh-ccCCCceeEEEEcCcHHHHHHHHHHHHHhccC
Q 015454 58 AIQQRAVMPIIK-----G----RDVIAQAQSGTGKTSMIALTVCQTV-DTSSREVQALILSPTRELATQTEKVILAIGDF 127 (406)
Q Consensus 58 ~~Q~~~~~~i~~-----~----~~~il~~~tGsGKT~~~~~~i~~~~-~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (406)
|||+-.+..+.- | +.+++..|=|-|||.......+..+ ..+..+..++++++++.-+....+.+......
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 678877776652 2 3478899999999966665555444 44556778999999999999999888776533
Q ss_pred cceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc--cCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCC
Q 015454 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (406)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~--~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~ 205 (406)
........ . ..... .....|.....+.+...+.. ...+-.+.+++|+||+|...+......+..-.... +
T Consensus 81 ~~~l~~~~-~-----~~~~~-~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r-~ 152 (477)
T PF03354_consen 81 SPELRKRK-K-----PKIIK-SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGAR-P 152 (477)
T ss_pred Chhhccch-h-----hhhhh-hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccC-C
Confidence 21110000 0 00000 01122222221222211111 22333457899999999886644334444334332 3
Q ss_pred CceEEEE
Q 015454 206 DLQVVLI 212 (406)
Q Consensus 206 ~~~~i~l 212 (406)
+++++.+
T Consensus 153 ~pl~~~I 159 (477)
T PF03354_consen 153 NPLIIII 159 (477)
T ss_pred CceEEEE
Confidence 4544444
No 239
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.81 E-value=0.0037 Score=53.19 Aligned_cols=86 Identities=21% Similarity=0.304 Sum_probs=65.0
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCc-chHHhHHHHh-cCCCEEEechHHHHHHHHccCCCcCCcc
Q 015454 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGK-SVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (406)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~ 177 (406)
+.+.+|||+.+---+..+.+.++.+. ..+..+.-++... ...++...+. ...+|.||||+++..+++.+.+.++++.
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 35678999998888889988888764 1123333344333 5556666555 3589999999999999999999999999
Q ss_pred eeecchhhH
Q 015454 178 LLVLDESDE 186 (406)
Q Consensus 178 ~vV~DE~h~ 186 (406)
+||+|--|.
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999998763
No 240
>PRK08116 hypothetical protein; Validated
Probab=96.81 E-value=0.022 Score=49.74 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=25.6
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHH
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~ 118 (406)
.+++.|++|+|||..+.. +.+.+... +..++++ +...+...+.
T Consensus 116 gl~l~G~~GtGKThLa~a-ia~~l~~~--~~~v~~~-~~~~ll~~i~ 158 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAAC-IANELIEK--GVPVIFV-NFPQLLNRIK 158 (268)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHHc--CCeEEEE-EHHHHHHHHH
Confidence 499999999999966554 44444332 2334444 4455544433
No 241
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.79 E-value=0.0097 Score=49.19 Aligned_cols=128 Identities=18% Similarity=0.264 Sum_probs=64.7
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEc-Cc-HHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhc
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS-PT-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~-P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (406)
+++.||||+|||.+..-........ +.++.+++ .+ |.=+ .++++.+....++.+.......
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~~~~----------- 66 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGA---VEQLKTYAEILGVPFYVARTES----------- 66 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESSTTS-----------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccH---HHHHHHHHHHhccccchhhcch-----------
Confidence 6799999999998777655444433 33344444 32 2222 2333333333334432211111
Q ss_pred CCCEEEechHH-HHHHHHccCCCcCCcceeecchhhHHhc-cCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHh
Q 015454 151 GVHVVSGTPGR-VCDMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTK 226 (406)
Q Consensus 151 ~~~iii~T~~~-l~~~l~~~~~~~~~~~~vV~DE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~ 226 (406)
.|.. +...++. ...+++++|++|-+..... ......+..+.....+..-++.+|||...........
T Consensus 67 -------~~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~ 135 (196)
T PF00448_consen 67 -------DPAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA 135 (196)
T ss_dssp -------CHHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH
T ss_pred -------hhHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH
Confidence 1111 1122221 1123467888887754321 1223455566666666666899999987765554444
No 242
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.028 Score=51.11 Aligned_cols=127 Identities=14% Similarity=0.236 Sum_probs=64.9
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcC-c-H-HHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHH
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP-T-R-ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P-~-~-~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (406)
+.+.+.||+|+|||..+........ .. +.++.++.. + + +...|+.. +....+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-~~--GkkVglI~aDt~RiaAvEQLk~----yae~lg------------------ 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-GK--KKTVGFITTDHSRIGTVQQLQD----YVKTIG------------------ 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-Hc--CCcEEEEecCCcchHHHHHHHH----HhhhcC------------------
Confidence 4578999999999976665443332 22 333444433 2 2 23344333 222222
Q ss_pred HhcCCCEE-EechHHHHHHHHccCCCcCCcceeecchhhHHhccC-cHHHHHHHHHhCCCCceEEEEEecCCh-HHHHHH
Q 015454 148 LEHGVHVV-SGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPPDLQVVLISATLPH-EILEMT 224 (406)
Q Consensus 148 ~~~~~~ii-i~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~lSAT~~~-~~~~~~ 224 (406)
..++ ..+|+.+...+..... ..++++|++|-+-+..... .-..+..+++...+...++.+|||... ++....
T Consensus 297 ----ipv~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~ 371 (436)
T PRK11889 297 ----FEVIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 371 (436)
T ss_pred ----CcEEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHH
Confidence 2222 3466666655433111 1247899999886543221 123334444443344446778988654 445555
Q ss_pred Hhc
Q 015454 225 TKF 227 (406)
Q Consensus 225 ~~~ 227 (406)
..+
T Consensus 372 ~~F 374 (436)
T PRK11889 372 TNF 374 (436)
T ss_pred HHh
Confidence 443
No 243
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.76 E-value=0.016 Score=51.73 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=70.0
Q ss_pred CCChHHHHHhHHhhhc----C---CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhcc
Q 015454 54 EKPSAIQQRAVMPIIK----G---RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (406)
Q Consensus 54 ~~l~~~Q~~~~~~i~~----~---~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (406)
..++|||..++..+.. + +-.++.||.|.||+..+... ...+......... -|+.. .+-.-+.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~l-A~~LlC~~~~~~~--~c~~c--------~~~~~g~ 71 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALAL-AEHVLASGPDPAA--AQRTR--------QLIAAGT 71 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHH-HHHHhCCCCCCCC--cchHH--------HHHhcCC
Confidence 4689999999988764 2 23789999999999665543 3333322211100 11111 1112223
Q ss_pred CcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCC
Q 015454 127 FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 206 (406)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~ 206 (406)
..++.+.....+.... .....|.|-..-.+.+.+.... .....+++|+|++|.+.... ...+.+.++.-++.
T Consensus 72 HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~ 143 (319)
T PRK08769 72 HPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAINRAA-CNALLKTLEEPSPG 143 (319)
T ss_pred CCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCHHH-HHHHHHHhhCCCCC
Confidence 3344333111100000 0001222222222222222222 23457899999999985543 34444566665556
Q ss_pred ceEEEEEec
Q 015454 207 LQVVLISAT 215 (406)
Q Consensus 207 ~~~i~lSAT 215 (406)
..++++|..
T Consensus 144 ~~fiL~~~~ 152 (319)
T PRK08769 144 RYLWLISAQ 152 (319)
T ss_pred CeEEEEECC
Confidence 666666654
No 244
>PRK12377 putative replication protein; Provisional
Probab=96.75 E-value=0.017 Score=49.52 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=26.8
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHH
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~ 119 (406)
.++++.||+|+|||..+.. +.+.+... +..+ +.++..++..+...
T Consensus 102 ~~l~l~G~~GtGKThLa~A-Ia~~l~~~--g~~v-~~i~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAA-IGNRLLAK--GRSV-IVVTVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHc--CCCe-EEEEHHHHHHHHHH
Confidence 5789999999999965544 33333322 2334 33444566555443
No 245
>PRK06893 DNA replication initiation factor; Validated
Probab=96.74 E-value=0.0048 Score=52.62 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=28.5
Q ss_pred CCcceeecchhhHHhcc-CcHHHHHHHHHhCCC-CceEEEEEecCChH
Q 015454 174 RAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPP-DLQVVLISATLPHE 219 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~-~~~~~~~~~~~~~~~-~~~~i~lSAT~~~~ 219 (406)
.+.+++++||+|.+... .+...+..+++.... +.+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 35689999999987533 233345555544433 34566778876553
No 246
>PRK08727 hypothetical protein; Validated
Probab=96.74 E-value=0.0072 Score=51.63 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=21.4
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEc
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~ 108 (406)
..+++.||+|+|||...... ...+... +.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~-~~~~~~~--~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALAL-CAAAEQA--GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHH-HHHHHHc--CCcEEEEe
Confidence 34899999999999654432 2222222 34566654
No 247
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.73 E-value=0.014 Score=63.20 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=45.7
Q ss_pred CChHHHHHhHHhhhcC--CcEEEECCCCCChhhHhHHHHHhhhc--cCCCceeEEEEcCcHHHHHHHH
Q 015454 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVD--TSSREVQALILSPTRELATQTE 118 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~--~~~il~~~tGsGKT~~~~~~i~~~~~--~~~~~~~~lil~P~~~l~~q~~ 118 (406)
.|++.|++|+..++.+ +-++|.|..|+|||.+.- .+...+. ....+.+++.++||-.-+..+.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLPESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhhcccCceEEEECCcHHHHHHHH
Confidence 6899999999999875 458999999999996543 2333332 1223456888999887766544
No 248
>PHA02533 17 large terminase protein; Provisional
Probab=96.71 E-value=0.0087 Score=57.38 Aligned_cols=147 Identities=14% Similarity=0.170 Sum_probs=83.0
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcc-e-eE
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN-I-QA 132 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~-~-~~ 132 (406)
.|.|+|...+..+..++-.++..+=..|||.+....++..... .++..+++++|+..-+....+.++....... . ..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~ 137 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-NKDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQP 137 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhc
Confidence 6899999999887666667888999999998777544433322 2345899999999988888877765432211 0 00
Q ss_pred EEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCC--CceEE
Q 015454 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP--DLQVV 210 (406)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~--~~~~i 210 (406)
...... .....+.++..|.+.|.+. ....-.+.+++++||+|.+.+ ....+..+...+.. ..+++
T Consensus 138 ~i~~~~----~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~~r~i 204 (534)
T PHA02533 138 GIVEWN----KGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRSSKII 204 (534)
T ss_pred ceeecC----ccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCCceEE
Confidence 000000 0011123455665554321 112233467899999997643 22333334433332 23444
Q ss_pred EEEec
Q 015454 211 LISAT 215 (406)
Q Consensus 211 ~lSAT 215 (406)
..|..
T Consensus 205 iiSTp 209 (534)
T PHA02533 205 ITSTP 209 (534)
T ss_pred EEECC
Confidence 44444
No 249
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.69 E-value=0.0065 Score=54.13 Aligned_cols=63 Identities=22% Similarity=0.298 Sum_probs=41.4
Q ss_pred HHHCCCCCChHHHHHhHHhhh-cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHH
Q 015454 48 IYQYGFEKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (406)
Q Consensus 48 l~~~~~~~l~~~Q~~~~~~i~-~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l 113 (406)
+...|. +++.|.+.+..+. .+.+++++|+||||||.. +-+++..+....+..+++.+=...+|
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCCCCceEEEecCCccc
Confidence 334444 5678887766554 467899999999999954 45566655433344566766666665
No 250
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.67 E-value=0.011 Score=55.18 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=15.6
Q ss_pred EEEECCCCCChhhHhHHHH
Q 015454 73 VIAQAQSGTGKTSMIALTV 91 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i 91 (406)
.++.||.|+|||.++...+
T Consensus 43 ~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6999999999997666543
No 251
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.66 E-value=0.012 Score=47.16 Aligned_cols=43 Identities=16% Similarity=0.381 Sum_probs=29.7
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCC
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 217 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 217 (406)
...+++|+||+|.+.... ...+...++.-+....++++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECChH
Confidence 568999999999876554 4566667777666777666666543
No 252
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.65 E-value=0.0091 Score=63.66 Aligned_cols=63 Identities=25% Similarity=0.300 Sum_probs=45.4
Q ss_pred CChHHHHHhHHhhhcC--CcEEEECCCCCChhhHhHHHHHhhhc--cCCCceeEEEEcCcHHHHHHHH
Q 015454 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVD--TSSREVQALILSPTRELATQTE 118 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~--~~~il~~~tGsGKT~~~~~~i~~~~~--~~~~~~~~lil~P~~~l~~q~~ 118 (406)
.|++.|++++..++.+ +-++|.|..|+|||.++-. ++..+. ....+..++.++||-.-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~-i~~~~~~l~e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRA-VMSAVNMLPESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHH-HHHHHHHHhhccCceEEEEechHHHHHHHH
Confidence 6899999999999865 5689999999999976432 222211 1223457888999887776654
No 253
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.63 E-value=0.0096 Score=51.42 Aligned_cols=49 Identities=12% Similarity=0.318 Sum_probs=32.9
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (406)
.+.++++.||+|+|||..+.......+ . .+. ..++++..+++.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~--~g~-sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-K--AGI-SVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H--cCC-eEEEEEHHHHHHHHHHHH
Confidence 568999999999999976654443443 2 123 455566677777766655
No 254
>PRK06921 hypothetical protein; Provisional
Probab=96.63 E-value=0.037 Score=48.25 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=26.2
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q 116 (406)
+.++++.|++|+|||..+.. +...+... .+..++++.. .++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~a-ia~~l~~~-~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTA-AANELMRK-KGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHhhh-cCceEEEEEH-HHHHHH
Confidence 56799999999999965543 33333322 1344566553 444333
No 255
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.63 E-value=0.0068 Score=51.89 Aligned_cols=19 Identities=11% Similarity=0.333 Sum_probs=15.6
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
..+++.||+|+|||.....
T Consensus 46 ~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5789999999999965543
No 256
>PLN03025 replication factor C subunit; Provisional
Probab=96.62 E-value=0.029 Score=50.54 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=25.5
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecC
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 216 (406)
...+++|+||+|.+.... ...+...++..+...+++ ++++.
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~i-l~~n~ 138 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFA-LACNT 138 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEE-EEeCC
Confidence 347899999999986543 344555555555555544 44443
No 257
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.59 E-value=0.012 Score=56.67 Aligned_cols=104 Identities=17% Similarity=0.284 Sum_probs=56.6
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcC
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (406)
.++|.|++|+|||.... ++.+.+.....+.+++++.. ..+..++...+..
T Consensus 316 pL~LyG~sGsGKTHLL~-AIa~~a~~~~~g~~V~Yita-eef~~el~~al~~---------------------------- 365 (617)
T PRK14086 316 PLFIYGESGLGKTHLLH-AIGHYARRLYPGTRVRYVSS-EEFTNEFINSIRD---------------------------- 365 (617)
T ss_pred cEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHHh----------------------------
Confidence 48999999999995443 34444433333455666554 5555554433321
Q ss_pred CCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC-cHHHHHHHHHhCCC-CceEEEEEecCCh
Q 015454 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPP-DLQVVLISATLPH 218 (406)
Q Consensus 152 ~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~-~~~~~~~~~~~~~~-~~~~i~lSAT~~~ 218 (406)
...+.|.+. +.++++|++||+|.+.... ....+..+++.+.. +.++|+ |+..++
T Consensus 366 -----~~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~III-TSd~~P 421 (617)
T PRK14086 366 -----GKGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVL-SSDRPP 421 (617)
T ss_pred -----ccHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEE-ecCCCh
Confidence 011222222 2347899999999886533 23444455554433 345554 555443
No 258
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.58 E-value=0.01 Score=53.67 Aligned_cols=132 Identities=16% Similarity=0.242 Sum_probs=73.2
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHh
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (406)
++-+.+.||||.|||.+..-.........++....||.+.+=-.. -.++++.+++..++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~----------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG--AVEQLKTYADIMGVPL----------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh--HHHHHHHHHHHhCCce-----------------
Confidence 456899999999999777654444432233344466666643322 2334444544444433
Q ss_pred cCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHh-ccCcHHHHHHHHHhCCCCceEEEEEecCC-hHHHHHHHhc
Q 015454 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLP-HEILEMTTKF 227 (406)
Q Consensus 150 ~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~lSAT~~-~~~~~~~~~~ 227 (406)
.++-+|.-|...+.. +.++++|.+|=+-+-. +......+..+.+...+-...+.+|||.. .++...+..+
T Consensus 264 ----~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f 335 (407)
T COG1419 264 ----EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQF 335 (407)
T ss_pred ----EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHh
Confidence 344566665554432 4456778888665321 22233455555555444445788899974 3445555554
Q ss_pred C
Q 015454 228 M 228 (406)
Q Consensus 228 ~ 228 (406)
.
T Consensus 336 ~ 336 (407)
T COG1419 336 S 336 (407)
T ss_pred c
Confidence 3
No 259
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.58 E-value=0.021 Score=53.60 Aligned_cols=42 Identities=14% Similarity=0.266 Sum_probs=25.5
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHH
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q 116 (406)
..+++.||+|+|||.... ++.+.+... +.+++++.. ..+..+
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~--~~~v~yi~~-~~f~~~ 183 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES--GGKILYVRS-ELFTEH 183 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc--CCCEEEeeH-HHHHHH
Confidence 358999999999995444 344444322 345666654 444443
No 260
>PRK09183 transposase/IS protein; Provisional
Probab=96.58 E-value=0.036 Score=48.17 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=27.9
Q ss_pred hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHH
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q 116 (406)
+..+.++++.||+|+|||..+......... .+..++++. ...+..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~---~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR---AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEe-HHHHHHH
Confidence 456788999999999999655543333222 234455553 3444433
No 261
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.55 E-value=0.015 Score=51.17 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=33.4
Q ss_pred hhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015454 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (406)
Q Consensus 66 ~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (406)
-+..|.-+++.|++|+|||......+.+.... .+.+++|++- ..-..+...++..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS~-E~~~~~~~~r~~~ 80 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTISL-EEPVVRTARRLLG 80 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEEc-ccCHHHHHHHHHH
Confidence 34556778999999999996555444444322 1456777764 2234455555433
No 262
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.55 E-value=0.05 Score=50.81 Aligned_cols=123 Identities=17% Similarity=0.198 Sum_probs=61.8
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhh-ccCCCceeEEEEc-Cc-HHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTV-DTSSREVQALILS-PT-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~-~~~~~~~~~lil~-P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (406)
++.+++.||||+|||.+....+.... ... +.++.++. .+ +.-+ .+.+..++...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~--g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~-------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG--KKKVALITLDTYRIGA---VEQLKTYAKIMGIPV-------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEECCccHHHH---HHHHHHHHHHhCCce--------------
Confidence 34578999999999976665443332 222 23344443 32 2111 233333332222221
Q ss_pred HHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhcc-CcHHHHHHHHH-hCCCCceEEEEEecCChHHHH
Q 015454 147 KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYR-YLPPDLQVVLISATLPHEILE 222 (406)
Q Consensus 147 ~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~-~~~~~~~~~~~-~~~~~~~~i~lSAT~~~~~~~ 222 (406)
..+.++..+...+.. ..++++|++|.+-..... .....+..++. ...+...++.++||.......
T Consensus 282 -------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 282 -------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred -------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHH
Confidence 122344445544443 235799999988643221 11234444444 212334578899998754433
No 263
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.54 E-value=0.021 Score=53.20 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=22.3
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEE
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil 107 (406)
.++++.||+|+|||...-. ++..+.....+..++++
T Consensus 56 ~~~lI~G~~GtGKT~l~~~-v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKK-VFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHhcCCcEEEEE
Confidence 5699999999999965444 44443332223444554
No 264
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.48 E-value=0.013 Score=51.06 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=15.7
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
.++++.||+|+|||..+-.
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4689999999999966543
No 265
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.47 E-value=0.0075 Score=56.21 Aligned_cols=136 Identities=16% Similarity=0.216 Sum_probs=73.3
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH-HHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcC
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE-LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (406)
.++.|+.|||||.+....++..+....++.+++++-|+.. +...+...+.......++....-...... .+.....+
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i~~~~~g 81 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EIKILNTG 81 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EEEecCCC
Confidence 5789999999998888777776655434577898989876 55556666654433332221110111100 00000113
Q ss_pred CCEEEech-HHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCC--CCceEEEEEecCChH
Q 015454 152 VHVVSGTP-GRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP--PDLQVVLISATLPHE 219 (406)
Q Consensus 152 ~~iii~T~-~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~--~~~~~i~lSAT~~~~ 219 (406)
..|++..- +.-.++ . ....++++.+||+..+....+. .+...+. .....+.+|.+|...
T Consensus 82 ~~i~f~g~~d~~~~i-k----~~~~~~~~~idEa~~~~~~~~~----~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 82 KKFIFKGLNDKPNKL-K----SGAGIAIIWFEEASQLTFEDIK----ELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred eEEEeecccCChhHh-h----CcceeeeehhhhhhhcCHHHHH----HHHHHhhccCCccEEEEEcCcCCC
Confidence 44555443 222111 1 1223689999999987544333 3333332 222247889998653
No 266
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.44 E-value=0.041 Score=42.10 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.4
Q ss_pred cceeecchhhHHhccC
Q 015454 176 IKLLVLDESDEMLSRG 191 (406)
Q Consensus 176 ~~~vV~DE~h~~~~~~ 191 (406)
..++++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 5899999999987654
No 267
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.44 E-value=0.014 Score=51.72 Aligned_cols=57 Identities=21% Similarity=0.383 Sum_probs=37.8
Q ss_pred ChHHHHHhHHhhh-cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHH
Q 015454 56 PSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (406)
Q Consensus 56 l~~~Q~~~~~~i~-~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l 113 (406)
+.+-|.+.+..+. .+++++++|+||||||. ++.+++..+....+..+++.+=...++
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTT-LANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHhhccCCCceEEEECCchhh
Confidence 4555666655544 46789999999999995 444555655443334567777766665
No 268
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.43 E-value=0.031 Score=50.20 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=27.0
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~ 117 (406)
+.++++.||||+|||..+.. +...+... +..++++ +...+..+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~a-Ia~~l~~~--g~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNC-IAKELLDR--GKSVIYR-TADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHH-HHHHHHHC--CCeEEEE-EHHHHHHHH
Confidence 57899999999999975543 33333322 3345554 435554444
No 269
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.42 E-value=0.024 Score=55.69 Aligned_cols=39 Identities=18% Similarity=0.439 Sum_probs=24.4
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
..++++||||+|.+....+. .+.+.++.-+...++|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~N-ALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFN-AMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHHH-HHHHHHHhcCCCeEEEEEE
Confidence 45789999999998765443 3444555544455444444
No 270
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.42 E-value=0.012 Score=50.04 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=34.8
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
|.-+++.|++|+|||...+-.+.+.+... +.++++++- .+-..++.+.+..++
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~-ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSF-EEPPEELIENMKSFG 71 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEES-SS-HHHHHHHHHTTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEe-cCCHHHHHHHHHHcC
Confidence 45689999999999977666666665541 234677764 444577777776654
No 271
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.42 E-value=0.01 Score=52.96 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=42.0
Q ss_pred HHHHHCCCCCChHHHHHhHHhh-hcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHH
Q 015454 46 RGIYQYGFEKPSAIQQRAVMPI-IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (406)
Q Consensus 46 ~~l~~~~~~~l~~~Q~~~~~~i-~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l 113 (406)
..+...|. +++.|.+.+..+ ..+++++++|+|||||| .++.+++..+....+..+++.+-.+.++
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 33444454 567788877754 45788999999999999 4445555543222334567776666654
No 272
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.015 Score=56.38 Aligned_cols=39 Identities=13% Similarity=0.352 Sum_probs=24.3
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
...+++|+||+|.+....+ ..+...++..++...+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEEEE
Confidence 3578999999998865543 34444555544445455443
No 273
>CHL00181 cbbX CbbX; Provisional
Probab=96.38 E-value=0.022 Score=50.25 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=16.8
Q ss_pred CCcEEEECCCCCChhhHhHHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALT 90 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~ 90 (406)
+.++++.||+|+|||.++-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999766543
No 274
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.38 E-value=0.032 Score=50.79 Aligned_cols=39 Identities=8% Similarity=0.258 Sum_probs=24.4
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
...++||+||+|.+.... ...+..+++..+...++++.+
T Consensus 124 ~~~~vlilDe~~~l~~~~-~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALREDA-QQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHHH-HHHHHHHHHhccCCCeEEEEe
Confidence 456799999999875432 334555555555556555443
No 275
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.35 E-value=0.047 Score=46.49 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=34.1
Q ss_pred hcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
..|.-+++.+++|+|||......+...+.. +.++++++. .+-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~~~~yi~~-e~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN---GYSVSYVST-QLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEeC-CCCHHHHHHHHHHhC
Confidence 446678999999999997654444443322 355788874 444455555555443
No 276
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.35 E-value=0.031 Score=52.79 Aligned_cols=40 Identities=15% Similarity=0.386 Sum_probs=24.0
Q ss_pred cCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
....+++|+||+|.+....+. .+...++.-++...+++.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~N-aLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAFN-ALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHHHH-HHHHHHhCCCCCeEEEEEe
Confidence 356889999999988664433 3344444444444444433
No 277
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.34 E-value=0.025 Score=48.21 Aligned_cols=43 Identities=9% Similarity=0.274 Sum_probs=25.1
Q ss_pred CcceeecchhhHHhccCcHHHHHHHHHhCCCCce-EEEEEecCCh
Q 015454 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ-VVLISATLPH 218 (406)
Q Consensus 175 ~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~-~i~lSAT~~~ 218 (406)
..+++|+||+|.+.... ...+..+++....... +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 46789999999875433 3344445544333333 4666766543
No 278
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.027 Score=53.87 Aligned_cols=39 Identities=15% Similarity=0.366 Sum_probs=25.5
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
..++++|+||+|.+....+. .+...++..++...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~n-aLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFN-ALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHHH-HHHHHHhccCCCeEEEEEE
Confidence 45789999999988765443 3444555555555555544
No 279
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.026 Score=56.63 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=23.1
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEE
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~l 212 (406)
..++++||||+|.+....+ ..+.+.++.-+...++|+.
T Consensus 118 gk~KViIIDEAh~LT~eAq-NALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSF-NALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhccCCCeEEEEE
Confidence 4578999999999854432 3444445544444544443
No 280
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.29 E-value=0.067 Score=53.49 Aligned_cols=28 Identities=18% Similarity=0.674 Sum_probs=18.6
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHh
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRY 202 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~ 202 (406)
....+||+||+|.+.... ...+..+.+.
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHH
Confidence 346789999999987643 3445555443
No 281
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.26 E-value=0.062 Score=47.94 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=28.3
Q ss_pred CChHHHHHhHHhhhc----C---CcEEEECCCCCChhhHhHHHH
Q 015454 55 KPSAIQQRAVMPIIK----G---RDVIAQAQSGTGKTSMIALTV 91 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~----~---~~~il~~~tGsGKT~~~~~~i 91 (406)
.++|||...+..+.+ + +-.++.||.|.||+..+...+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a 46 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFS 46 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHH
Confidence 578999999887764 2 347999999999996555433
No 282
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.25 E-value=0.031 Score=54.16 Aligned_cols=41 Identities=15% Similarity=0.353 Sum_probs=24.9
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEec
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 215 (406)
..++++||||+|.+....+. .+.+.++.-+....+|+.|-.
T Consensus 123 gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEeCC
Confidence 45789999999998655433 333344443445555555543
No 283
>PTZ00293 thymidine kinase; Provisional
Probab=96.24 E-value=0.034 Score=46.05 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=25.5
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcH
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~ 111 (406)
.=.++.||++||||.-.+-.+.+.... +.+++++-|..
T Consensus 5 ~i~vi~GpMfSGKTteLLr~i~~y~~a---g~kv~~~kp~~ 42 (211)
T PTZ00293 5 TISVIIGPMFSGKTTELMRLVKRFTYS---EKKCVVIKYSK 42 (211)
T ss_pred EEEEEECCCCChHHHHHHHHHHHHHHc---CCceEEEEecc
Confidence 335789999999996555544443332 44688888844
No 284
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.23 E-value=0.05 Score=49.06 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=27.9
Q ss_pred ChHHHHHhHHhhhcC-----CcEEEECCCCCChhhHhHHHH
Q 015454 56 PSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTV 91 (406)
Q Consensus 56 l~~~Q~~~~~~i~~~-----~~~il~~~tGsGKT~~~~~~i 91 (406)
++|||...|..+..- +..++.||.|.||+..+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 479999999887752 347899999999997665433
No 285
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.23 E-value=0.044 Score=55.42 Aligned_cols=39 Identities=15% Similarity=0.405 Sum_probs=26.9
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
..++++||||+|.+.... ...+.++++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 567899999999987654 345555666655666666655
No 286
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.22 E-value=0.06 Score=46.57 Aligned_cols=70 Identities=11% Similarity=0.158 Sum_probs=41.2
Q ss_pred HcCCCCCCCCCcceeeccCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhH
Q 015454 9 RRGGGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~ 88 (406)
|.+++.+-........ .-+....+|+++++++-+.+.+.. ...=++|.||||||||.+..
T Consensus 84 RvN~f~qr~~~a~vlR--~Ip~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 84 RVNAFKQRGGYALVLR--LIPSKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred EeehhhhcCCcEEEEe--ccCccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHHHH
Confidence 3344444333333333 233667778888888766653321 11238999999999996544
Q ss_pred HHHHhhhccCC
Q 015454 89 LTVCQTVDTSS 99 (406)
Q Consensus 89 ~~i~~~~~~~~ 99 (406)
+++..+....
T Consensus 144 -amId~iN~~~ 153 (353)
T COG2805 144 -AMIDYINKHK 153 (353)
T ss_pred -HHHHHHhccC
Confidence 4666665543
No 287
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.22 E-value=0.028 Score=48.22 Aligned_cols=52 Identities=15% Similarity=0.216 Sum_probs=36.4
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
|..+++.||+|+|||..++-.+...+.. +.+++|++- .+-..+..+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 4668999999999997666555555432 456788874 556667777666654
No 288
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.19 E-value=0.0066 Score=61.73 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=82.6
Q ss_pred cceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCc-EEEEcCcccCCCCCCCCCEEEEecCCC
Q 015454 273 TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTR-VLITTDVWARGLDVQQVSLVINYDLPN 351 (406)
Q Consensus 273 ~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~-vli~t~~~~~G~d~~~~~~vi~~~~~~ 351 (406)
.++|+|.........+...+..+++......+ .++....+..|++ ++ +++-++..+.|+|+-.+.||+..++..
T Consensus 1222 ekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePiL 1296 (1394)
T KOG0298|consen 1222 EKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPIL 1296 (1394)
T ss_pred ceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheecccc
Confidence 68999999888888888888777776544433 2344556666665 54 456678889999999999999999999
Q ss_pred ChhhhHhhhhhccCCCCceeEEE--E-eccCcHHHHHHHHHH
Q 015454 352 NRELYIHRIGRSGRFGRKGVAIN--F-VKNDDIKILRDIEQY 390 (406)
Q Consensus 352 s~~~~~Q~~GR~~R~~~~~~~~~--~-~~~~~~~~~~~~~~~ 390 (406)
++..-.|.+||++|.|++.+..+ | ++++-++.+..+...
T Consensus 1297 N~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~ 1338 (1394)
T KOG0298|consen 1297 NPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITS 1338 (1394)
T ss_pred CchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhh
Confidence 99999999999999998865443 2 333333444444333
No 289
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.018 Score=52.28 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=61.8
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHh
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (406)
+..+++.||||+|||..+............ ..++.+++. ...-.--.+.++.++...++.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G-~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~---------------- 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFG-ASKVALLTT-DSYRIGGHEQLRIFGKILGVPVH---------------- 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEec-ccccccHHHHHHHHHHHcCCceE----------------
Confidence 456899999999999777655444332211 123444432 22211223344444433333322
Q ss_pred cCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC-cHHHHHHHHHhCCCCceEEEEEecCChHHHH
Q 015454 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPPDLQVVLISATLPHEILE 222 (406)
Q Consensus 150 ~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~ 222 (406)
.+.++..+...+.. +.+.++|++|.+-...... ....+..+.....+...++.+|||.......
T Consensus 199 -----~~~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 199 -----AVKDGGDLQLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred -----ecCCcccHHHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 22333333333322 3346889999986432111 1222222222222334588899998665433
No 290
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.12 E-value=0.018 Score=63.72 Aligned_cols=62 Identities=31% Similarity=0.408 Sum_probs=44.7
Q ss_pred CChHHHHHhHHhhhcC--CcEEEECCCCCChhhHhH---HHHHhhhccCCCceeEEEEcCcHHHHHHHH
Q 015454 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIA---LTVCQTVDTSSREVQALILSPTRELATQTE 118 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~--~~~il~~~tGsGKT~~~~---~~i~~~~~~~~~~~~~lil~P~~~l~~q~~ 118 (406)
.|++.|++|+..++.+ +-++|.|+.|+|||.... -++...+.. .+.+++.++||..-+.++.
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHHH
Confidence 6899999999998875 446889999999996552 223333222 3557888999877666654
No 291
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.049 Score=51.60 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=14.9
Q ss_pred EEEECCCCCChhhHhHHH
Q 015454 73 VIAQAQSGTGKTSMIALT 90 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~ 90 (406)
.++.||+|+|||..+...
T Consensus 39 ~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 39 YIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 699999999999766543
No 292
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.08 E-value=0.019 Score=55.31 Aligned_cols=132 Identities=14% Similarity=0.162 Sum_probs=79.3
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCc--ceeEEEEECCcchHHhHHHH
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI--NIQAHACVGGKSVGEDIRKL 148 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 148 (406)
+-.++..|--.|||.... +++..+.....+.+++|++|.+..++...+++....... ...+....| ... ....
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i~f 329 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SFSF 329 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EEEe
Confidence 458899999999997666 455544444457789999999999999999988765321 111111111 100 0011
Q ss_pred hcC--CCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecC
Q 015454 149 EHG--VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (406)
Q Consensus 149 ~~~--~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 216 (406)
.++ ..|.+.+. ...+...-..++++|+|||+.+....+...+ -.+.. .++++|.+|.|-
T Consensus 330 ~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~~--~n~k~I~ISS~N 390 (738)
T PHA03368 330 PDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQ--TNCKIIFVSSTN 390 (738)
T ss_pred cCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHhc--cCccEEEEecCC
Confidence 112 23444431 1223344567899999999988765544443 22222 367788898883
No 293
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.062 Score=48.26 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=27.4
Q ss_pred ChHHHHHhHHhhhcC-----CcEEEECCCCCChhhHhHHH
Q 015454 56 PSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALT 90 (406)
Q Consensus 56 l~~~Q~~~~~~i~~~-----~~~il~~~tGsGKT~~~~~~ 90 (406)
++|||...|..+... +..++.||.|.|||..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 479999999888742 34789999999999665543
No 294
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.05 E-value=0.044 Score=50.29 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=23.0
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
...+++|+||+|.+....+. .+...++..++...+++.|
T Consensus 118 ~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEEc
Confidence 45689999999988654332 2333444444444555543
No 295
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.05 E-value=0.017 Score=56.74 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=38.6
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCC
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 217 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 217 (406)
...-++|+|+.|.+.+......+..+++..|++.+.++.|-+-+
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 33468999999999999888999999999999999999988854
No 296
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.04 E-value=0.048 Score=51.28 Aligned_cols=147 Identities=14% Similarity=0.101 Sum_probs=84.3
Q ss_pred CChHHHHHhHHhhhc------C----CcEEEECCCCCChhhHhHHHHH-hhhccCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015454 55 KPSAIQQRAVMPIIK------G----RDVIAQAQSGTGKTSMIALTVC-QTVDTSSREVQALILSPTRELATQTEKVILA 123 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~------~----~~~il~~~tGsGKT~~~~~~i~-~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (406)
.+-|||+-++..+.- + +.+++..|-+-|||..+...++ ..+.....+..+.+++|+.+-+.+....++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 678999999998872 2 2378999999999966553333 3334445677899999999988888777765
Q ss_pred hccCcceeEEEEECCcchHHhHHHHhcCCC--EEEechHHHHHHHHc--cCCCcCCcceeecchhhHHhccCcHHHHHHH
Q 015454 124 IGDFINIQAHACVGGKSVGEDIRKLEHGVH--VVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 199 (406)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--iii~T~~~l~~~l~~--~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~ 199 (406)
...... +.... ... +... |.+.--....+.+.. ...+-.+..+.|+||.|.....+ ..+...
T Consensus 141 mv~~~~----------~l~~~-~~~-q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~ 206 (546)
T COG4626 141 MVKRDD----------DLRDL-CNV-QTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEA 206 (546)
T ss_pred HHHhCc----------chhhh-hcc-ccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHH
Confidence 432221 00000 000 1111 111111111222222 23445567899999999886653 333333
Q ss_pred HHhC--CCCceEEEEEec
Q 015454 200 YRYL--PPDLQVVLISAT 215 (406)
Q Consensus 200 ~~~~--~~~~~~i~lSAT 215 (406)
..-+ .++.+++..|-.
T Consensus 207 ~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 207 KGGLGARPEGLVVYITTS 224 (546)
T ss_pred HhhhccCcCceEEEEecC
Confidence 3322 345666666654
No 297
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.04 E-value=0.039 Score=49.34 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=27.0
Q ss_pred ChHHHHHhHHhhhc----C---CcEEEECCCCCChhhHhHHHH
Q 015454 56 PSAIQQRAVMPIIK----G---RDVIAQAQSGTGKTSMIALTV 91 (406)
Q Consensus 56 l~~~Q~~~~~~i~~----~---~~~il~~~tGsGKT~~~~~~i 91 (406)
++|||...|..+.. | +-.++.||.|.||+..+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A 45 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA 45 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH
Confidence 57899988887764 2 346799999999996655433
No 298
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.15 Score=46.67 Aligned_cols=104 Identities=22% Similarity=0.317 Sum_probs=53.4
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCce-eEEEEcCcHHHHHHHHHHHHH-hccCcceeEEEEECCcchHHhHHHH
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREV-QALILSPTRELATQTEKVILA-IGDFINIQAHACVGGKSVGEDIRKL 148 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~-~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (406)
.++++-|+||+|||.+.-. ++..+....... .+-|=|....-..|....+-. ++
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~----------------------- 98 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG----------------------- 98 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC-----------------------
Confidence 4699999999999966555 444444333323 233333333333333333222 11
Q ss_pred hcCCCEEEec---hHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCC
Q 015454 149 EHGVHVVSGT---PGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (406)
Q Consensus 149 ~~~~~iii~T---~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~ 204 (406)
+.+..-..+ .+.+++.+.. ....-+||+||++.+..... ..+..+.+...
T Consensus 99 -~~p~~g~~~~~~~~~l~~~~~~----~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~ 151 (366)
T COG1474 99 -KVPLTGDSSLEILKRLYDNLSK----KGKTVIVILDEVDALVDKDG-EVLYSLLRAPG 151 (366)
T ss_pred -CCCCCCCchHHHHHHHHHHHHh----cCCeEEEEEcchhhhccccc-hHHHHHHhhcc
Confidence 001111112 1223333332 34456899999999987754 55566655543
No 299
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.00 E-value=0.029 Score=50.57 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=27.9
Q ss_pred CChHHHHHhHHhhhc----C---CcEEEECCCCCChhhHhHHHH
Q 015454 55 KPSAIQQRAVMPIIK----G---RDVIAQAQSGTGKTSMIALTV 91 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~----~---~~~il~~~tGsGKT~~~~~~i 91 (406)
.++|||...|..+.. + +-.++.||.|.||+..+....
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A 45 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHH
Confidence 468999999887764 2 346899999999996655433
No 300
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.93 E-value=0.05 Score=48.01 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=15.9
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
+.++++.||+|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3479999999999997664
No 301
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.067 Score=49.52 Aligned_cols=126 Identities=15% Similarity=0.181 Sum_probs=59.4
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHh
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (406)
|.-+.+.||+|+|||..+.................++.+.+--. -..+.+..++...++.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri--galEQL~~~a~ilGvp~~---------------- 252 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI--GGHEQLRIYGKLLGVSVR---------------- 252 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch--hHHHHHHHHHHHcCCcee----------------
Confidence 34589999999999976654433322221112234555554222 222233333333333322
Q ss_pred cCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhcc-CcHHHHHHHHHhCCCCceEEEEEecCChHHHH
Q 015454 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILE 222 (406)
Q Consensus 150 ~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~ 222 (406)
.+.++..+...+.. +.+.+++++|.+-..... .....+..+.....+...++.++||.......
T Consensus 253 -----~v~~~~dl~~al~~----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~ 317 (420)
T PRK14721 253 -----SIKDIADLQLMLHE----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD 317 (420)
T ss_pred -----cCCCHHHHHHHHHH----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH
Confidence 12333333333222 445678888876322111 11222233322222334578899997655444
No 302
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.87 E-value=0.043 Score=49.43 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=26.3
Q ss_pred CcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEec
Q 015454 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (406)
Q Consensus 175 ~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 215 (406)
..++||+||+|.+........+..+++..+...++++ +++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Il-t~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFII-TAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEE-EcC
Confidence 4689999999988433344556666776666666555 444
No 303
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.87 E-value=0.029 Score=48.90 Aligned_cols=112 Identities=18% Similarity=0.296 Sum_probs=56.9
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccC----CCceeEEEEcCcHHHHHHHHHHHHH-hccCcceeEEEEECCcchHHhH
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQALILSPTRELATQTEKVILA-IGDFINIQAHACVGGKSVGEDI 145 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~----~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 145 (406)
.+.++.|++|-|||.+.--..-.+-... ..-+.+.+-+|...-....+..+-. ++......
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~-------------- 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR-------------- 127 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCC--------------
Confidence 5799999999999975433222221111 1123456667766666666555433 22111000
Q ss_pred HHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcH--HHHHHHHHhCCCCce
Q 015454 146 RKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK--DQIYDVYRYLPPDLQ 208 (406)
Q Consensus 146 ~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~--~~~~~~~~~~~~~~~ 208 (406)
.+...+..... ..+..-..+++|+||+|.++..... ..+.+.++.+.+..+
T Consensus 128 -----------~~~~~~~~~~~-~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 128 -----------DRVAKLEQQVL-RLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ 180 (302)
T ss_pred -----------CCHHHHHHHHH-HHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC
Confidence 01111111111 1122344789999999998765432 344455555554443
No 304
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.86 E-value=0.053 Score=52.84 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=23.1
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
..++++|+||+|.+....+. .+...++.-+....+|+.|
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEE
Confidence 45889999999998665433 2333333333344455444
No 305
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.85 E-value=0.089 Score=51.07 Aligned_cols=57 Identities=11% Similarity=0.162 Sum_probs=42.8
Q ss_pred hcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhcc
Q 015454 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (406)
.+.+-.++.+|-|-|||.+..+.+...+.. .+.+++|.+|...-+.+..+.+.....
T Consensus 185 fkq~~tV~taPRqrGKS~iVgi~l~~La~f--~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 185 YGKCYTAATVPRRCGKTTIMAIILAAMISF--LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred HhhcceEEEeccCCCcHHHHHHHHHHHHHh--cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 344668889999999997776555544432 246799999999999998888776654
No 306
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.074 Score=51.10 Aligned_cols=40 Identities=13% Similarity=0.240 Sum_probs=25.6
Q ss_pred cCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
....+++|+||+|.+.... ...+...++..++...+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3457899999999986543 334445555555555555555
No 307
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.83 E-value=0.08 Score=47.85 Aligned_cols=40 Identities=18% Similarity=0.424 Sum_probs=26.3
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEe
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 214 (406)
....+||+||++.+.... ...+...+..-+....+++.+-
T Consensus 108 ~~~kviiidead~mt~~A-~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTEDA-ANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHHH-HHHHHHHhccCCCCeEEEEEcC
Confidence 568999999999987643 4455555555555555555443
No 308
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.82 E-value=0.022 Score=51.18 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=15.6
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
.+.|+.||+|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 4689999999999965554
No 309
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.79 E-value=0.083 Score=45.05 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=31.3
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (406)
.|..+++.+++|+|||..+...+.+.+.. +..++++.- .....+..+....+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 35678999999999996655444444432 345666664 33344554444443
No 310
>PF13173 AAA_14: AAA domain
Probab=95.79 E-value=0.17 Score=38.64 Aligned_cols=42 Identities=12% Similarity=0.296 Sum_probs=27.5
Q ss_pred CcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHH
Q 015454 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEI 220 (406)
Q Consensus 175 ~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~ 220 (406)
.-.+|++||+|.+. ++...+..+.... ++.+ +.+|++....+
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~-ii~tgS~~~~l 102 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIK-IILTGSSSSLL 102 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCce-EEEEccchHHH
Confidence 45789999999984 4566777777754 3444 45566644433
No 311
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.79 E-value=0.13 Score=44.76 Aligned_cols=127 Identities=13% Similarity=0.246 Sum_probs=65.5
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEE-cCc--HHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHH
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL-SPT--RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil-~P~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (406)
..+.+.+++|+|||..+....... ... +.++.++ +.+ .+...|+...... .++
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l-~~~--~~~v~~i~~D~~ri~~~~ql~~~~~~----~~~----------------- 131 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQF-HGK--KKTVGFITTDHSRIGTVQQLQDYVKT----IGF----------------- 131 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH-HHc--CCeEEEEecCCCCHHHHHHHHHHhhh----cCc-----------------
Confidence 568999999999997665433332 221 2234333 322 2455555443322 112
Q ss_pred HhcCCCEEE-echHHHHHHHHccCCCcCCcceeecchhhHHhcc-CcHHHHHHHHHhCCCCceEEEEEecCCh-HHHHHH
Q 015454 148 LEHGVHVVS-GTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPH-EILEMT 224 (406)
Q Consensus 148 ~~~~~~iii-~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT~~~-~~~~~~ 224 (406)
.+.. .+++.+...+..- .....+++|++|-+-..... .....+..+.....+...++.+|||... +....+
T Consensus 132 -----~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~ 205 (270)
T PRK06731 132 -----EVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 205 (270)
T ss_pred -----eEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHH
Confidence 2222 3455554443321 11235789999988654321 1223334444444444457789998754 555555
Q ss_pred Hhc
Q 015454 225 TKF 227 (406)
Q Consensus 225 ~~~ 227 (406)
..+
T Consensus 206 ~~f 208 (270)
T PRK06731 206 TNF 208 (270)
T ss_pred HHh
Confidence 554
No 312
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.78 E-value=0.078 Score=51.45 Aligned_cols=39 Identities=15% Similarity=0.443 Sum_probs=25.6
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
...+++|+||+|.+....+ ..+...++..+....+|+.|
T Consensus 117 ~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe
Confidence 4678999999998866543 34445555555555555555
No 313
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.77 E-value=0.064 Score=52.53 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=24.1
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
...+++||||+|.+....+ ..+...++..+....+|+.|
T Consensus 118 gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 4578999999998764433 23444455444555555544
No 314
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.77 E-value=0.07 Score=49.15 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=17.7
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhh
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTV 95 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~ 95 (406)
.++++.||+|+|||.+.-. ++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~~~-~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKY-VMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHHHH-HHHHH
Confidence 5799999999999965543 44433
No 315
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.74 E-value=0.064 Score=50.55 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=18.0
Q ss_pred CcEEEECCCCCChhhHhHHHHHhh
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQT 94 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~ 94 (406)
+-+.+.||||+|||.+........
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHH
Confidence 347899999999998776644433
No 316
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.72 E-value=0.023 Score=52.77 Aligned_cols=41 Identities=17% Similarity=0.413 Sum_probs=29.7
Q ss_pred hHHHHHhHHhhhcCCc--EEEECCCCCChhhHhHHHHHhhhccC
Q 015454 57 SAIQQRAVMPIIKGRD--VIAQAQSGTGKTSMIALTVCQTVDTS 98 (406)
Q Consensus 57 ~~~Q~~~~~~i~~~~~--~il~~~tGsGKT~~~~~~i~~~~~~~ 98 (406)
.+.|...+..+++..+ +++.||||||||... +.++..+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL-Y~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL-YAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH-HHHHHHhcCC
Confidence 7788888888777544 689999999999654 4455555443
No 317
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.71 E-value=0.022 Score=55.16 Aligned_cols=125 Identities=15% Similarity=0.171 Sum_probs=75.6
Q ss_pred CChHHHHHhHHhhhcC--CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHH-HHHHHhccCccee
Q 015454 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE-KVILAIGDFINIQ 131 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~--~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~-~~~~~~~~~~~~~ 131 (406)
..+|||.+....+... +.+.+..++-+|||.+.+..+...+...+ ..++++.||...+..+. +.+..........
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P--~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l 93 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDP--GPMLYVQPTDDAAKDFSKERLDPMIRASPVL 93 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCC--CCEEEEEEcHHHHHHHHHHHHHHHHHhCHHH
Confidence 5789999999988764 57899999999999877766666654443 45899999999999986 4454433221110
Q ss_pred EEEEEC----CcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHh
Q 015454 132 AHACVG----GKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (406)
Q Consensus 132 ~~~~~~----~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~ 188 (406)
-..+.. ........+.+ .+..+.++...+-. .+....++++++||++.+-
T Consensus 94 ~~~~~~~~~~~~~~t~~~k~f-~gg~l~~~ga~S~~------~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 94 RRKLSPSKSRDSGNTILYKRF-PGGFLYLVGANSPS------NLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHhCchhhcccCCchhheec-CCCEEEEEeCCCCc------ccccCCcCEEEEechhhcc
Confidence 011111 01111111111 23444444322211 2334567899999999884
No 318
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.71 E-value=0.062 Score=49.87 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=26.5
Q ss_pred ChHHHHHhHHhhhcCCcEEEECCCCCChhhHhH
Q 015454 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 56 l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~ 88 (406)
+.......+..+..++++++.||+|+|||..+-
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 445556667777789999999999999997664
No 319
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.70 E-value=0.031 Score=52.80 Aligned_cols=87 Identities=22% Similarity=0.291 Sum_probs=57.1
Q ss_pred CCCCHHHH-HHHHHCCCCC-------ChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC---CCceeEEE
Q 015454 38 MGIKDDLL-RGIYQYGFEK-------PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALI 106 (406)
Q Consensus 38 ~~l~~~i~-~~l~~~~~~~-------l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~---~~~~~~li 106 (406)
.+..++++ ..|++.--.. ..+-|.+++.. -+++-.+|+|..|||||.+++--+...++.. -.+..+++
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlv 265 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLV 265 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEE
Confidence 33444443 5555543223 33455555542 3356689999999999988887666666432 22344999
Q ss_pred EcCcHHHHHHHHHHHHHhc
Q 015454 107 LSPTRELATQTEKVILAIG 125 (406)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~ 125 (406)
+.|.+-+..-....+-.++
T Consensus 266 l~PN~vFleYis~VLPeLG 284 (747)
T COG3973 266 LGPNRVFLEYISRVLPELG 284 (747)
T ss_pred EcCcHHHHHHHHHhchhhc
Confidence 9999999888887776665
No 320
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.69 E-value=0.12 Score=46.51 Aligned_cols=38 Identities=18% Similarity=0.388 Sum_probs=24.1
Q ss_pred CcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 175 ~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
..++|++||+|.+.... ...+...++..++...+++.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 46799999999875432 234555556555556555544
No 321
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.69 E-value=0.057 Score=50.91 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=33.9
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
|.-+++.+++|+|||...+..+..... .+.+++|+.- .+...|...+..+++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEc-cccHHHHHHHHHHcC
Confidence 345799999999999655544443331 2456888875 455667766666554
No 322
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.67 E-value=0.033 Score=54.46 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=23.4
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEE
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~l 212 (406)
..++++|+||+|.+....+. .+.+.++.-++...+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~N-ALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHHH-HHHHHHHcCCCCeEEEEe
Confidence 45789999999988665433 344455554444444444
No 323
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.62 E-value=0.12 Score=46.13 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=16.5
Q ss_pred CCcEEEECCCCCChhhHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~ 89 (406)
++++++.||+|+|||..+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45799999999999976554
No 324
>PRK04195 replication factor C large subunit; Provisional
Probab=95.59 E-value=0.075 Score=50.88 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=16.1
Q ss_pred CCcEEEECCCCCChhhHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~ 89 (406)
.+.+++.||+|+|||..+..
T Consensus 39 ~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999965543
No 325
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.59 E-value=0.083 Score=52.87 Aligned_cols=76 Identities=22% Similarity=0.314 Sum_probs=63.9
Q ss_pred CcceEEEecchhhHHHHHHHHhc----CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-ccCCCCCCCCCEEEE
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-WARGLDVQQVSLVIN 346 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~~~G~d~~~~~~vi~ 346 (406)
+.++++.+|+..-+...++.+++ .++.+..++|+++..+|..+++...+|+.+|+|+|.. +...+.+.++.+||+
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 35899999999988877776654 4789999999999999999999999999999999974 555677888888775
Q ss_pred e
Q 015454 347 Y 347 (406)
Q Consensus 347 ~ 347 (406)
-
T Consensus 390 D 390 (681)
T PRK10917 390 D 390 (681)
T ss_pred e
Confidence 3
No 326
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.59 E-value=0.08 Score=51.06 Aligned_cols=40 Identities=15% Similarity=0.348 Sum_probs=24.9
Q ss_pred cCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
....+++|+||+|.+....+. .+...++..++...+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~n-aLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFN-AMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHHH-HHHHHHhCCCCCEEEEEEe
Confidence 355789999999988654432 3344444444455566555
No 327
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.59 E-value=0.18 Score=50.14 Aligned_cols=121 Identities=13% Similarity=0.111 Sum_probs=58.8
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcC
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (406)
-+.+.||||+|||.++........... ++.++.++.--..- .-..+.++.+....++.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~-G~kkV~lit~Dt~R-igA~eQL~~~a~~~gvpv------------------- 245 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVARE-GADQLALLTTDSFR-IGALEQLRIYGRILGVPV------------------- 245 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHc-CCCeEEEecCcccc-hHHHHHHHHHHHhCCCCc-------------------
Confidence 368999999999977665443332222 12244444332211 011233333333332222
Q ss_pred CCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhcc-CcHHHHHHHHHhCCCCceEEEEEecCChH
Q 015454 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHE 219 (406)
Q Consensus 152 ~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT~~~~ 219 (406)
..+.+|+.+.+.+.. ..+.++|+||=+-..... .....+..+.....+...++.++||....
T Consensus 246 --~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~ 308 (767)
T PRK14723 246 --HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD 308 (767)
T ss_pred --cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH
Confidence 123356666555543 234577888876643221 12223333333333445578888887544
No 328
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.59 E-value=0.13 Score=48.15 Aligned_cols=50 Identities=12% Similarity=0.296 Sum_probs=28.7
Q ss_pred ceeecchhhHHhc-cCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHh
Q 015454 177 KLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTK 226 (406)
Q Consensus 177 ~~vV~DE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~ 226 (406)
++||+|.+-.... ...-..+..+.....+..-++.++|+...+.......
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 7888888854322 1222334444444445556777888876655555444
No 329
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.59 E-value=0.16 Score=48.57 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=16.4
Q ss_pred CcEEEECCCCCChhhHhHHH
Q 015454 71 RDVIAQAQSGTGKTSMIALT 90 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~ 90 (406)
+..+++||.|+|||.++...
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999766653
No 330
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.58 E-value=0.091 Score=48.51 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=58.5
Q ss_pred HHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHH
Q 015454 43 DLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (406)
Q Consensus 43 ~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 122 (406)
.++..+++ ++..+...|.++.-..-.|.. .+.|-.|||||...+.- .+.+...++..++++.+-|+.|+.++.+.+.
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~K-aa~lh~knPd~~I~~Tfftk~L~s~~r~lv~ 227 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHK-AAELHSKNPDSRIAFTFFTKILASTMRTLVP 227 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHH-HHHHhcCCCCceEEEEeehHHHHHHHHHHHH
Confidence 44555544 344567788888766666766 67899999999655432 3445556677889999999999999988887
Q ss_pred Hhc
Q 015454 123 AIG 125 (406)
Q Consensus 123 ~~~ 125 (406)
+++
T Consensus 228 ~F~ 230 (660)
T COG3972 228 EFF 230 (660)
T ss_pred HHH
Confidence 765
No 331
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.55 E-value=0.1 Score=50.90 Aligned_cols=40 Identities=15% Similarity=0.424 Sum_probs=25.3
Q ss_pred cCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
+...+++|+||+|.+....+ ..+...++..++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~-naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAF-NALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHHH-HHHHHHHHhCCCCeEEEEEe
Confidence 45678999999998865433 33444455545555556554
No 332
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.55 E-value=0.046 Score=48.32 Aligned_cols=59 Identities=15% Similarity=0.230 Sum_probs=40.7
Q ss_pred CCCCChHHHHHhHHhhhcC-CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHH
Q 015454 52 GFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (406)
Q Consensus 52 ~~~~l~~~Q~~~~~~i~~~-~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~ 114 (406)
.|..+++-|...+..+... .+++++|+||||||.. +-++...+. ...+++.+=.+.+|.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~---~~eRvItiEDtaELq 213 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFID---SDERVITIEDTAELQ 213 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCC---CcccEEEEeehhhhc
Confidence 4556889898888877765 4999999999999942 333333332 233677777766653
No 333
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.18 Score=48.03 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=45.8
Q ss_pred CCcceeecchhhHHhccC-------cHHHHHHHHHhC---CCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCcccc
Q 015454 174 RAIKLLVLDESDEMLSRG-------FKDQIYDVYRYL---PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTL 243 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~-------~~~~~~~~~~~~---~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (406)
+...+|.|||++.+.... ....+..++-.+ .....+..+.||-.|++.+-. ++ .+-
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpA--iL------------RPG 668 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPA--IL------------RPG 668 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchh--hc------------CCC
Confidence 346789999999986431 122333333222 233457888899665432211 00 011
Q ss_pred CCceEEEEEecccccHHHHHHHHHhh
Q 015454 244 EGIKQFFVAVEREEWKFDTLCDLYDT 269 (406)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (406)
.--...|+..+..+.+.+.|..+.+.
T Consensus 669 RlDk~LyV~lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 669 RLDKLLYVGLPNAEERVAILKTITKN 694 (802)
T ss_pred ccCceeeecCCCHHHHHHHHHHHhcc
Confidence 11234666777777788888877775
No 334
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.54 E-value=0.15 Score=50.35 Aligned_cols=148 Identities=15% Similarity=0.219 Sum_probs=82.2
Q ss_pred HHHCCCCCChHHHHHhHHhhhcCC--cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 48 IYQYGFEKPSAIQQRAVMPIIKGR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 48 l~~~~~~~l~~~Q~~~~~~i~~~~--~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
+..........-|.+.+..+.+.+ -+++.|.-|-|||.+.=+++....... ....+++..|+.+-++...+.+.+-.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~-~~~~iiVTAP~~~nv~~Lf~fa~~~l 285 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA-GSVRIIVTAPTPANVQTLFEFAGKGL 285 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHHHHhH
Confidence 333333344555556666666643 479999999999966655553222222 14579999999998888877766544
Q ss_pred cCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCC
Q 015454 126 DFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (406)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~ 205 (406)
...+.+............. .......|=..+|.... .. -+++|+|||=.+ --..+..+...+
T Consensus 286 ~~lg~~~~v~~d~~g~~~~--~~~~~~~i~y~~P~~a~---------~~-~DllvVDEAAaI----plplL~~l~~~~-- 347 (758)
T COG1444 286 EFLGYKRKVAPDALGEIRE--VSGDGFRIEYVPPDDAQ---------EE-ADLLVVDEAAAI----PLPLLHKLLRRF-- 347 (758)
T ss_pred HHhCCccccccccccceee--ecCCceeEEeeCcchhc---------cc-CCEEEEehhhcC----ChHHHHHHHhhc--
Confidence 4433322111111000000 00011223344554322 11 589999999755 234555555543
Q ss_pred CceEEEEEecC
Q 015454 206 DLQVVLISATL 216 (406)
Q Consensus 206 ~~~~i~lSAT~ 216 (406)
+.+++|.|+
T Consensus 348 --~rv~~sTTI 356 (758)
T COG1444 348 --PRVLFSTTI 356 (758)
T ss_pred --CceEEEeee
Confidence 368889997
No 335
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.53 E-value=0.17 Score=41.55 Aligned_cols=40 Identities=13% Similarity=0.405 Sum_probs=23.9
Q ss_pred cCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
.....++|+||+|.+.... ...+...++..++...+++++
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 3567899999999986543 233444445444444444443
No 336
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.46 E-value=0.13 Score=47.26 Aligned_cols=106 Identities=15% Similarity=0.290 Sum_probs=58.7
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhc
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (406)
.-+++.||+|+|||-..- ++.+......+..+++++.... ........+..
T Consensus 114 nplfi~G~~GlGKTHLl~-Aign~~~~~~~~a~v~y~~se~-f~~~~v~a~~~--------------------------- 164 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQ-AIGNEALANGPNARVVYLTSED-FTNDFVKALRD--------------------------- 164 (408)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHHHhhCCCceEEeccHHH-HHHHHHHHHHh---------------------------
Confidence 458999999999995433 2344444444555666665521 11111111111
Q ss_pred CCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhcc-CcHHHHHHHHHhCCCC-ceEEEEEecCChH
Q 015454 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPD-LQVVLISATLPHE 219 (406)
Q Consensus 151 ~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~-~~~~~~~~~~~~~~~~-~~~i~lSAT~~~~ 219 (406)
.+.+.|.+. . +++++++|+++.+... .....+..+++.+... .|+++.|..+|..
T Consensus 165 ------~~~~~Fk~~-------y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 165 ------NEMEKFKEK-------Y-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred ------hhHHHHHHh-------h-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 122222222 2 5789999999988765 3445555556655443 3666666555543
No 337
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.46 E-value=0.14 Score=43.89 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=33.9
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
|.-+++.|++|+|||......+...+. .+.+++|+.-. +-..+..+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 355899999999999666554444443 24567777664 34456666666654
No 338
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.45 E-value=0.13 Score=51.36 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=63.9
Q ss_pred CcceEEEecchhhHHHHHHHHhc-CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRG-YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL 349 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 349 (406)
+.++||.++++..+..+.+.|++ .+..+..+||+++..+|.+.+....+|+.+|+|+|.... -+.+.++..+|+-+.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEECC
Confidence 36899999999999999999876 477899999999999999999999999999999997432 245667777776553
No 339
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.45 E-value=0.12 Score=54.08 Aligned_cols=45 Identities=22% Similarity=0.345 Sum_probs=35.2
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCCh
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPH 218 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~ 218 (406)
..--+||+|++|.+.+......+..+++..+++..+|+.|-+.++
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 334689999999987666667888888888888888888877443
No 340
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.45 E-value=0.065 Score=52.33 Aligned_cols=40 Identities=13% Similarity=0.360 Sum_probs=24.9
Q ss_pred cCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
....+++|+||+|.+.... ...+...++.-++...+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 3567899999999886543 334445555544455555444
No 341
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.44 E-value=0.042 Score=50.18 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=23.9
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEE
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil 107 (406)
.+..++++||||||||... ..++..+....+..+++.+
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~~~~~~~~Ivti 185 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCGETYPDRKIVTY 185 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHHhcCCCceEEEE
Confidence 3456899999999999544 4455555433333344444
No 342
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.40 E-value=0.028 Score=45.74 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=27.4
Q ss_pred hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHH
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~ 117 (406)
+.+++++++.||+|+|||..+...+...+.. +..++++ +..+|....
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~---g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK---GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEE-EHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC---CcceeEe-ecCceeccc
Confidence 3457889999999999997766544444432 3445554 445555543
No 343
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.39 E-value=0.093 Score=50.21 Aligned_cols=39 Identities=15% Similarity=0.394 Sum_probs=25.6
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
...+++|+||+|.+....+ ..+...++..++...+++.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A~-NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAF-NALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHHH-HHHHHHHhhcCCceEEEEEE
Confidence 4678999999998865443 34455555555556566555
No 344
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.39 E-value=0.1 Score=49.84 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=16.5
Q ss_pred EEEECCCCCChhhHhHHHHHhhh
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTV 95 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~ 95 (406)
.++.||+|+|||.++.. +...+
T Consensus 39 ~Lf~GppGtGKTTlA~~-lA~~l 60 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL-IAMAV 60 (504)
T ss_pred EEEECCCCCCHHHHHHH-HHHHH
Confidence 49999999999977654 34444
No 345
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.39 E-value=0.061 Score=54.00 Aligned_cols=73 Identities=26% Similarity=0.403 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcC----C-ceEEE-eecCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 015454 259 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY----N-FTVSS-MHGDMPQKERDAIMGEFRSGTTRVLITTDV 331 (406)
Q Consensus 259 ~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~----~-~~~~~-~~~~~~~~~r~~~~~~f~~~~~~vli~t~~ 331 (406)
.+-.+..++-...++++++.+||..-+...++.|+.. + ..+.. ||+.++..+++.++++|.+|+.+|||+|+.
T Consensus 112 Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 112 TFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 3445555555555589999999998888888877653 2 33333 999999999999999999999999999964
No 346
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.37 E-value=0.13 Score=48.87 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=18.0
Q ss_pred cCCcEEEECCCCCChhhHhHHHHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVC 92 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~ 92 (406)
.|+.+.+.||+|+|||..+.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356788999999999976654333
No 347
>PF05729 NACHT: NACHT domain
Probab=95.37 E-value=0.14 Score=40.81 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=15.9
Q ss_pred EEEECCCCCChhhHhHHHHHhh
Q 015454 73 VIAQAQSGTGKTSMIALTVCQT 94 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~ 94 (406)
++|.|++|+|||......+...
T Consensus 3 l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6899999999996555433333
No 348
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.34 E-value=0.11 Score=45.41 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=23.3
Q ss_pred ChHHHHHhHHhhh----cCC-cEEEECCCCCChhhHhHH
Q 015454 56 PSAIQQRAVMPII----KGR-DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 56 l~~~Q~~~~~~i~----~~~-~~il~~~tGsGKT~~~~~ 89 (406)
+++.+.+++..+. .+. .+++.||+|+|||..+-.
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 4566666666543 223 588999999999965543
No 349
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.33 E-value=0.12 Score=47.25 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=32.5
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
|.-+++.|++|+|||...+..+..... .+.+++|+.-. +...|...+..+++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~---~g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAK---RGGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEECC-cCHHHHHHHHHHcC
Confidence 345799999999999655544433322 23468888653 44566665555543
No 350
>PRK05973 replicative DNA helicase; Provisional
Probab=95.31 E-value=0.056 Score=45.93 Aligned_cols=85 Identities=15% Similarity=0.215 Sum_probs=51.9
Q ss_pred ccCCCCHHHHHHHHHCCCCC----------ChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEE
Q 015454 36 DAMGIKDDLLRGIYQYGFEK----------PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (406)
Q Consensus 36 ~~~~l~~~i~~~l~~~~~~~----------l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~l 105 (406)
++.++++.+.+.....||.. .+|. .+..--+..|.-++|.|++|+|||...+-.+.+.... +.+++
T Consensus 21 ~~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~-~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vl 96 (237)
T PRK05973 21 QNIPLHEALDRIAAEEGFSSWSLLAAKAAATTPA-EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGV 96 (237)
T ss_pred cCCcHHHHHHHHHHHhccchHHHHHHhccCCCCH-HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEE
Confidence 45566666766666667642 2331 1222233445668999999999997666555555433 44577
Q ss_pred EEcCcHHHHHHHHHHHHHhc
Q 015454 106 ILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 106 il~P~~~l~~q~~~~~~~~~ 125 (406)
|++- .+-..|..+++..++
T Consensus 97 yfSl-Ees~~~i~~R~~s~g 115 (237)
T PRK05973 97 FFTL-EYTEQDVRDRLRALG 115 (237)
T ss_pred EEEE-eCCHHHHHHHHHHcC
Confidence 7765 444677777777664
No 351
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.31 E-value=0.16 Score=47.27 Aligned_cols=40 Identities=13% Similarity=0.298 Sum_probs=23.2
Q ss_pred cCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
+...+++|+||+|.+...... .+...++..++...+++.+
T Consensus 125 ~~~~kvvIIdea~~l~~~~~~-~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAAFN-AFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred cCCeEEEEEeChhhCCHHHHH-HHHHHHhcCCCCeEEEEEe
Confidence 456789999999988654322 3333444433444444433
No 352
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.31 E-value=0.07 Score=48.48 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=27.4
Q ss_pred cCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEec
Q 015454 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 215 (406)
....+++|+||+|.+..... ..+...++..+....++++|..
T Consensus 139 ~g~~rVviIDeAd~l~~~aa-naLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAA-NAILKTLEEPPARALFILISHS 180 (351)
T ss_pred cCCceEEEEEchhhcCHHHH-HHHHHHHhcCCCCceEEEEECC
Confidence 35678999999998865443 3455555555555666666544
No 353
>PHA00012 I assembly protein
Probab=95.30 E-value=0.3 Score=43.11 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=21.5
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccC
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTS 98 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~ 98 (406)
.++.|-+|+|||+.+...+...+.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 47899999999998888777777554
No 354
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.30 E-value=0.095 Score=50.91 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=16.7
Q ss_pred CcEEEECCCCCChhhHhHHHH
Q 015454 71 RDVIAQAQSGTGKTSMIALTV 91 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i 91 (406)
...++.||.|+|||.++....
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 347899999999997776544
No 355
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.27 E-value=0.056 Score=47.65 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=17.8
Q ss_pred CcEEEECCCCCChhhHhHHHHHhh
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQT 94 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~ 94 (406)
+.+++.||||+|||......+...
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999997766544433
No 356
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=0.056 Score=52.38 Aligned_cols=146 Identities=18% Similarity=0.233 Sum_probs=71.8
Q ss_pred hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHH-hccCcce-----eEEEEECCcc
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINI-----QAHACVGGKS 140 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~-----~~~~~~~~~~ 140 (406)
+..|+.+.+.||.|+|||.++. ++..++....|...+==+|-+++-..+.+.--. .++..-+ .....+|-.+
T Consensus 491 i~pGe~vALVGPSGsGKSTias--LL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~ 568 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIAS--LLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDN 568 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHH--HHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCC
Confidence 3457889999999999997665 444444444444223234555555554442111 1111100 0001111111
Q ss_pred -hHHh-------------HHHHhcCCCEEEechHHHHHHHHcc-----CCCcCCcceeecchhhHHhccCcHHHHHHHHH
Q 015454 141 -VGED-------------IRKLEHGVHVVSGTPGRVCDMIKRK-----TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 201 (406)
Q Consensus 141 -~~~~-------------~~~~~~~~~iii~T~~~l~~~l~~~-----~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~ 201 (406)
..++ +..+.++++-.|+.-+..++-=++. .-..++..++|+|||-..++......+...+.
T Consensus 569 ~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~ 648 (716)
T KOG0058|consen 569 ATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALD 648 (716)
T ss_pred CCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHH
Confidence 1111 1222333333444332222111110 11236688999999999888777777777776
Q ss_pred hCCCCceEEEEEec
Q 015454 202 YLPPDLQVVLISAT 215 (406)
Q Consensus 202 ~~~~~~~~i~lSAT 215 (406)
.+..+ +.+++=|-
T Consensus 649 ~~~~~-rTVlvIAH 661 (716)
T KOG0058|consen 649 RLMQG-RTVLVIAH 661 (716)
T ss_pred HhhcC-CeEEEEeh
Confidence 66555 34444443
No 357
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.16 E-value=0.21 Score=45.77 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=27.0
Q ss_pred cCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecC
Q 015454 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 216 (406)
....+++|+||+|.+.... ...+...++.-+....++++|..+
T Consensus 139 ~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECCc
Confidence 3567899999999875443 334445555544455566655554
No 358
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.15 E-value=0.45 Score=37.64 Aligned_cols=52 Identities=29% Similarity=0.548 Sum_probs=37.0
Q ss_pred cCCcceeecchhhHHhccCc--HHHHHHHHHhCCCCceEEEEEecCChHHHHHH
Q 015454 173 TRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMT 224 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~ 224 (406)
...++++|+||+-...+.++ .+.+..+++..|+..-+|+.+-.+++++.+..
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 45689999999998866653 45666777777777766766666676655543
No 359
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.15 E-value=0.14 Score=50.92 Aligned_cols=77 Identities=17% Similarity=0.292 Sum_probs=63.6
Q ss_pred CcceEEEecchhhHHHHHHHHhc----CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-ccCCCCCCCCCEEEE
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-WARGLDVQQVSLVIN 346 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~~~G~d~~~~~~vi~ 346 (406)
+.++++.+|+..-+...++.+++ .++++..++|+++..++...++...+|+.+|+|+|.. +...+++.++..||+
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 35899999999988877766654 4789999999999999999999999999999999975 445677777887775
Q ss_pred ec
Q 015454 347 YD 348 (406)
Q Consensus 347 ~~ 348 (406)
-.
T Consensus 364 DE 365 (630)
T TIGR00643 364 DE 365 (630)
T ss_pred ec
Confidence 43
No 360
>PHA00729 NTP-binding motif containing protein
Probab=95.13 E-value=0.29 Score=41.13 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=36.9
Q ss_pred CCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC-cH----HHHHHHHHhCCCCceEEEEEecCChHHHHHHHh
Q 015454 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FK----DQIYDVYRYLPPDLQVVLISATLPHEILEMTTK 226 (406)
Q Consensus 152 ~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~-~~----~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~ 226 (406)
...++.+.+.+...+....-.....+++|+||+-.-.... |. .....+...+.+..+++.+...-+.++...+..
T Consensus 59 ~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 3455556666655554321112345789999943322211 11 112223333333445666666656666666555
No 361
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.11 E-value=0.67 Score=37.46 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=15.3
Q ss_pred EEEECCCCCChhhHhHHHHH
Q 015454 73 VIAQAQSGTGKTSMIALTVC 92 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~ 92 (406)
+++.|++|+|||......+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999976654443
No 362
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.10 E-value=0.15 Score=43.86 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=26.8
Q ss_pred hcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcC
Q 015454 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P 109 (406)
..|.-++|.|++|+|||...+-.+.+..... +.+++|++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeC
Confidence 3455689999999999966555444444331 345788875
No 363
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.09 E-value=0.096 Score=50.64 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=22.8
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
...+++|+||+|.+.... ...+...++..++...++++|
T Consensus 118 ~~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEEEEC
Confidence 346899999999875433 234444445444444444444
No 364
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.07 E-value=0.16 Score=48.68 Aligned_cols=76 Identities=13% Similarity=0.195 Sum_probs=62.5
Q ss_pred CcceEEEecchhhHHHHHHHHhc-CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEec
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRG-YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYD 348 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 348 (406)
++++|+.++++..+..+.+.|++ .+..+..+||+++..+|.....+..+|+.+|+|+|...- =..++++..||+-+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCCCEEEEEC
Confidence 35899999999999999988876 467889999999999999999999999999999997532 24566777777654
No 365
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.06 E-value=0.69 Score=37.73 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=71.1
Q ss_pred hcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHH-HHHHHHHHHhccCcceeEEEEECCcchHHhHH
Q 015454 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA-TQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~-~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (406)
.....+.+..++|.|||.+++-..+.++..+. +++++-=.+.-. .--...+.++ .++.......+.....
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~---~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~~g~~~~~~~--- 90 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGK---KVGVVQFIKGAWSTGERNLLEFG---GGVEFHVMGTGFTWET--- 90 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCC---eEEEEEEecCCCccCHHHHHhcC---CCcEEEECCCCCcccC---
Confidence 34578999999999999888877777765543 344442222110 0111122221 1222222111101000
Q ss_pred HHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCc--HHHHHHHHHhCCCCceEEEEEecCChHHHHH
Q 015454 147 KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEM 223 (406)
Q Consensus 147 ~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~ 223 (406)
....--.......+..... .+....+++||+||+-...+.++ .+.+..+++..|+..-+|+..-.+++++.+.
T Consensus 91 ---~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ 165 (191)
T PRK05986 91 ---QDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEA 165 (191)
T ss_pred ---CCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 0000000111112222111 22345689999999998887764 3566667777666665554444455555544
No 366
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.98 E-value=0.049 Score=45.19 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=25.2
Q ss_pred cCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEE
Q 015454 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~l 212 (406)
....+.||+|||+.+... ....+++.++...+..++.+.
T Consensus 111 ~grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFala 149 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALA 149 (333)
T ss_pred CCceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhh
Confidence 355678999999987643 344556666665555555443
No 367
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.97 E-value=0.053 Score=48.97 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=28.9
Q ss_pred hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHH
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l 113 (406)
+..+++++++||||||||. ++.+++..+.. ..+++.+=++.++
T Consensus 159 v~~~~nilI~G~tGSGKTT-ll~aLl~~i~~---~~rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTT-MSKTLISAIPP---QERLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHH-HHHHHHcccCC---CCCEEEECCCccc
Confidence 4457899999999999994 44445555433 3356666666654
No 368
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=94.96 E-value=0.47 Score=43.72 Aligned_cols=146 Identities=18% Similarity=0.182 Sum_probs=64.0
Q ss_pred EEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHH---HHHHHHHhccC-cceeEEEEECCcchHHhHHHHh
Q 015454 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ---TEKVILAIGDF-INIQAHACVGGKSVGEDIRKLE 149 (406)
Q Consensus 74 il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 149 (406)
++.++.|+|||......++......+....++++.....+... ....+...... ............-. +.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 74 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKII------LP 74 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEE------ET
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEE------ec
Confidence 4788999999988777777666554443556666334444444 33334443333 12222111111110 03
Q ss_pred cCCCEEEechHHH--HHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecC--ChHHHHHHH
Q 015454 150 HGVHVVSGTPGRV--CDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL--PHEILEMTT 225 (406)
Q Consensus 150 ~~~~iii~T~~~l--~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~--~~~~~~~~~ 225 (406)
++..|.+.+.+.= ...+. -..++++++||+-......+...+........... .+..|.|+ .........
T Consensus 75 nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~p~~~~~~~~~~~~ 148 (384)
T PF03237_consen 75 NGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSI-RMYISTPPNPGGWFYEIFQ 148 (384)
T ss_dssp TS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHHHHHHH
T ss_pred CceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccCcc-eEEeecCCCCCCceeeeee
Confidence 4555666663321 11111 14578999999887655544444444444333222 22444443 344455555
Q ss_pred hcCCCC
Q 015454 226 KFMTDP 231 (406)
Q Consensus 226 ~~~~~~ 231 (406)
......
T Consensus 149 ~~~~~~ 154 (384)
T PF03237_consen 149 RNLDDD 154 (384)
T ss_dssp HHHCTS
T ss_pred hhhcCC
Confidence 444443
No 369
>PRK06620 hypothetical protein; Validated
Probab=94.94 E-value=0.053 Score=45.60 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=14.5
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
..+++.||+|+|||....
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999996443
No 370
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.93 E-value=0.063 Score=51.08 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=27.1
Q ss_pred hHHHHHhHHhhhcCC--cEEEECCCCCChhhHhHHHHHhhhc
Q 015454 57 SAIQQRAVMPIIKGR--DVIAQAQSGTGKTSMIALTVCQTVD 96 (406)
Q Consensus 57 ~~~Q~~~~~~i~~~~--~~il~~~tGsGKT~~~~~~i~~~~~ 96 (406)
.+.|.+.+..+.... -++++||||||||.... .++..+.
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~-a~L~~l~ 267 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTLY-AALSRLN 267 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH-HHHhccC
Confidence 667777777766543 36899999999996543 3455543
No 371
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.93 E-value=0.058 Score=49.13 Aligned_cols=27 Identities=15% Similarity=0.398 Sum_probs=19.9
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhc
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~ 96 (406)
.+..++++||||||||... ..++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4567999999999999544 44555553
No 372
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.08 Score=47.43 Aligned_cols=80 Identities=20% Similarity=0.290 Sum_probs=43.4
Q ss_pred cccccccCCCCHHHHHHHHHC----CCC-C------Ch---HHHHHh------HHhhhcC-----CcEEEECCCCCChhh
Q 015454 31 AITSFDAMGIKDDLLRGIYQY----GFE-K------PS---AIQQRA------VMPIIKG-----RDVIAQAQSGTGKTS 85 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~----~~~-~------l~---~~Q~~~------~~~i~~~-----~~~il~~~tGsGKT~ 85 (406)
....|...+....+.++|+.- ... + +. ..=++| +|.+.+| +.+++.||+|+|||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 456678888888888887641 110 0 11 111122 1222333 569999999999994
Q ss_pred HhHHHHHhhhccCCCceeEEEEcCcHHHHHHH
Q 015454 86 MIALTVCQTVDTSSREVQALILSPTRELATQT 117 (406)
Q Consensus 86 ~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~ 117 (406)
++.......+ .+++-+.+..|...|
T Consensus 261 ------LAKAvATEc~-tTFFNVSsstltSKw 285 (491)
T KOG0738|consen 261 ------LAKAVATECG-TTFFNVSSSTLTSKW 285 (491)
T ss_pred ------HHHHHHHhhc-CeEEEechhhhhhhh
Confidence 2222122222 466666656555444
No 373
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=94.89 E-value=0.081 Score=45.87 Aligned_cols=41 Identities=10% Similarity=0.274 Sum_probs=26.7
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHH
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~ 114 (406)
.+|-||||+||+- ++-.++..-.-.+....+++++|.+..+
T Consensus 90 ~~VYGPTG~GKSq-LlRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-LLRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHH-HHHHhhhcCcccCCCCceEEECCCCCCC
Confidence 6899999999994 2222222222234456799999987543
No 374
>PRK04328 hypothetical protein; Provisional
Probab=94.88 E-value=0.24 Score=42.84 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=34.6
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
.|..+++.|++|+|||...+..+.+.+.. +.+++|++ +.+-..+..+.+..++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~---ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 34568999999999997666555554433 34466666 4445556666666554
No 375
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.84 E-value=0.15 Score=49.69 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=15.8
Q ss_pred cEEEECCCCCChhhHhHHHH
Q 015454 72 DVIAQAQSGTGKTSMIALTV 91 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i 91 (406)
..+++||.|+|||.++-...
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999997665543
No 376
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.83 E-value=0.33 Score=44.19 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=17.8
Q ss_pred CCcEEEECCCCCChhhHhHHHHHh
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQ 93 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~ 93 (406)
++-+++.||+|+|||..+......
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999766654433
No 377
>PRK10436 hypothetical protein; Provisional
Probab=94.81 E-value=0.085 Score=49.72 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=26.5
Q ss_pred hHHHHHhHHhhhc--CCcEEEECCCCCChhhHhHHHHHhhhc
Q 015454 57 SAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVD 96 (406)
Q Consensus 57 ~~~Q~~~~~~i~~--~~~~il~~~tGsGKT~~~~~~i~~~~~ 96 (406)
.+.|.+.+..+.. +.-++++||||||||.... .++..+.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~-a~l~~~~ 243 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLY-SALQTLN 243 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHH-HHHHhhC
Confidence 5566666666554 3558999999999996553 4455543
No 378
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=94.78 E-value=0.89 Score=36.49 Aligned_cols=140 Identities=17% Similarity=0.256 Sum_probs=62.1
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCC
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGV 152 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (406)
+.+-...|-|||.+++-.++.++.. +.+++++-=.+. ....-+...+....++....+..+-........ .
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~---G~rV~ivQFlKg--~~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~----~ 76 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH---GMRVLIVQFLKG--GRYSGELKALKKLPNVEIERFGKGFVWRMNEEE----E 76 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT---T--EEEEESS----SS--HHHHHHGGGT--EEEE--TT----GGGHH----H
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC---CCEEEEEEEecC--CCCcCHHHHHHhCCeEEEEEcCCcccccCCCcH----H
Confidence 5667788999999888877777754 445766654444 111122222222222333222111100000000 0
Q ss_pred CEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCc--HHHHHHHHHhCCCCceEEEEEecCChHHHHHH
Q 015454 153 HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMT 224 (406)
Q Consensus 153 ~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~ 224 (406)
+ ....+..++... .......+++||+||+-...+.++ ...+..+++..|+..-+|+....+++++.+..
T Consensus 77 ~--~~~~~~~~~~a~-~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 77 D--RAAAREGLEEAK-EAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp H--HHHHHHHHHHHH-HHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred H--HHHHHHHHHHHH-HHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 1 011112222221 123346689999999998887764 35666777766666665555555555555443
No 379
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.76 E-value=0.18 Score=49.91 Aligned_cols=95 Identities=17% Similarity=0.182 Sum_probs=71.5
Q ss_pred EecccccHHHHHHHHHhhc--CCcceEEEecchhhHHHHHHHHhc-CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEE
Q 015454 252 AVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRG-YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLIT 328 (406)
Q Consensus 252 ~~~~~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~ 328 (406)
.-.+.+.|.+....+++.. .++.+||.++.+.....+.+.|+. .|.++..+|+++++.+|.....+..+|+.+|+|+
T Consensus 223 ~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIG 302 (730)
T COG1198 223 DGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIG 302 (730)
T ss_pred eCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEE
Confidence 3334444666666555433 225899999999888878777765 4789999999999999999999999999999999
Q ss_pred cCcccCCCCCCCCCEEEEe
Q 015454 329 TDVWARGLDVQQVSLVINY 347 (406)
Q Consensus 329 t~~~~~G~d~~~~~~vi~~ 347 (406)
|.++ .=..++++..+|..
T Consensus 303 tRSA-lF~Pf~~LGLIIvD 320 (730)
T COG1198 303 TRSA-LFLPFKNLGLIIVD 320 (730)
T ss_pred echh-hcCchhhccEEEEe
Confidence 9753 23455666766653
No 380
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.70 E-value=0.012 Score=50.34 Aligned_cols=16 Identities=25% Similarity=0.713 Sum_probs=12.9
Q ss_pred EEEECCCCCChhhHhH
Q 015454 73 VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~ 88 (406)
+++.|++|+|||..+.
T Consensus 1 ~vv~G~pGsGKSt~i~ 16 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIK 16 (234)
T ss_pred CEEEcCCCCCHHHHHH
Confidence 4789999999996443
No 381
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.69 E-value=0.63 Score=43.31 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=21.4
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcC
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P 109 (406)
+.++|++|+|||.+..-.... +.. .+.++++++.
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~-l~~--~G~kV~lV~~ 136 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYY-YQR--KGFKPCLVCA 136 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHH--CCCCEEEEcC
Confidence 689999999999766644433 222 2345555544
No 382
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.69 E-value=0.38 Score=42.13 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=21.6
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEc
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~ 108 (406)
-+.+.+|+|+|||.+......... . .+.+++++.
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~-~--~g~~V~li~ 107 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLK-K--QGKSVLLAA 107 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-h--cCCEEEEEe
Confidence 467889999999977665444332 2 234555554
No 383
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.63 E-value=0.05 Score=52.92 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=17.1
Q ss_pred hhcCCcEEEECCCCCChhhHh
Q 015454 67 IIKGRDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~ 87 (406)
+.+|+-+.+.||+|||||..+
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl 378 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLL 378 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 345788999999999999533
No 384
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.61 E-value=0.28 Score=48.13 Aligned_cols=40 Identities=10% Similarity=0.252 Sum_probs=23.8
Q ss_pred cCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
+...+++|+||+|.+.... ...+...++.-++...+|+.+
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999886543 233444444444444445544
No 385
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.59 E-value=0.53 Score=43.57 Aligned_cols=43 Identities=19% Similarity=0.395 Sum_probs=25.3
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCCh
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPH 218 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~ 218 (406)
...+++|+||+|.+..... ..+...++.-++... +++++|-+.
T Consensus 116 ~~~kViiIDead~m~~~aa-naLLk~LEep~~~~~-fIL~a~~~~ 158 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAA-NALLKAVEEPPPRTV-WLLCAPSPE 158 (394)
T ss_pred CCcEEEEEechhhcCHHHH-HHHHHHhhcCCCCCe-EEEEECChH
Confidence 4678999999999865432 334444554444444 444444333
No 386
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.59 E-value=0.091 Score=48.25 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=42.5
Q ss_pred CChHHHHHhHHhh------hcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHH
Q 015454 55 KPSAIQQRAVMPI------IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (406)
Q Consensus 55 ~l~~~Q~~~~~~i------~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~ 117 (406)
+|++-|++++..+ .++.++++.|+-|+|||+.+-. +...+.. .+..+++++||-.-+...
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~-i~~~~~~--~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKA-IIDYLRS--RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHH-HHHHhcc--ccceEEEecchHHHHHhc
Confidence 3678899998888 5678899999999999965443 3333322 345688888876654443
No 387
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.58 E-value=0.087 Score=43.27 Aligned_cols=40 Identities=15% Similarity=0.318 Sum_probs=28.6
Q ss_pred CChHHHHHhHHhhh-cCCcEEEECCCCCChhhHhHHHHHhhh
Q 015454 55 KPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTV 95 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~-~~~~~il~~~tGsGKT~~~~~~i~~~~ 95 (406)
.+.+.|.+.+.... .+..+++.||||||||..+ ..++..+
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i 49 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFI 49 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhc
Confidence 36777887777554 4788999999999999543 3344444
No 388
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.56 E-value=0.23 Score=45.57 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=14.5
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
..++.||+|+|||..+..
T Consensus 38 ~~Ll~G~~G~GKt~~a~~ 55 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARI 55 (355)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999965543
No 389
>PRK10867 signal recognition particle protein; Provisional
Probab=94.48 E-value=0.26 Score=45.99 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=17.0
Q ss_pred EEEECCCCCChhhHhHHHHHhh
Q 015454 73 VIAQAQSGTGKTSMIALTVCQT 94 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~ 94 (406)
+++++++|+|||.+..-.+...
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999997766544433
No 390
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.47 E-value=0.51 Score=43.62 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=17.1
Q ss_pred EEEECCCCCChhhHhHHHHHhh
Q 015454 73 VIAQAQSGTGKTSMIALTVCQT 94 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~ 94 (406)
+++.||+|+|||......+...
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7799999999997776655433
No 391
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.47 E-value=0.18 Score=46.15 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=22.1
Q ss_pred hhcCCcEEEECCCCCChhhHhHHHHHhhhccC
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS 98 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~ 98 (406)
+-.|+.+++.||+|+|||.... .+.+.+..+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~-~i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQ-KIAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHH-HHHHhhccc
Confidence 4458889999999999996433 355555443
No 392
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=94.44 E-value=0.098 Score=52.37 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=57.7
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC-CCceeEEEEcCcHHHHHHHHHHHHHhcc
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGD 126 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (406)
.|++-|.+++.+. ....+|.|+.|||||.+..--+.+.+... -....++.++=|+..+.++.+++.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999999876 56799999999999998888777777553 3445688888899999999999988764
No 393
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.44 E-value=0.11 Score=50.54 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=26.9
Q ss_pred hHHHHHhHHhhhc--CCcEEEECCCCCChhhHhHHHHHhhhc
Q 015454 57 SAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVD 96 (406)
Q Consensus 57 ~~~Q~~~~~~i~~--~~~~il~~~tGsGKT~~~~~~i~~~~~ 96 (406)
.+.|.+.+..+.. +.-++++||||||||... ..++..+.
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 5666667766554 345789999999999664 44555553
No 394
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.37 E-value=0.2 Score=49.13 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=15.7
Q ss_pred cEEEECCCCCChhhHhHHHH
Q 015454 72 DVIAQAQSGTGKTSMIALTV 91 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i 91 (406)
..++.||.|+|||.++...+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35899999999997665543
No 395
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.37 E-value=0.38 Score=38.58 Aligned_cols=52 Identities=21% Similarity=0.463 Sum_probs=35.6
Q ss_pred cCCcceeecchhhHHhccCc--HHHHHHHHHhCCCCceEEEEEecCChHHHHHH
Q 015454 173 TRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMT 224 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~ 224 (406)
...+++||+||+-...+.++ .+.+..+++..|+..-+|+..-.+++++.+..
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 45689999999998877763 34666777777766666655555566555543
No 396
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.37 E-value=0.29 Score=47.56 Aligned_cols=19 Identities=32% Similarity=0.274 Sum_probs=15.4
Q ss_pred cEEEECCCCCChhhHhHHH
Q 015454 72 DVIAQAQSGTGKTSMIALT 90 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~ 90 (406)
..++.||.|.|||.++...
T Consensus 40 ayLf~Gp~G~GKTt~Ar~l 58 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAF 58 (563)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999766543
No 397
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.35 E-value=0.36 Score=47.82 Aligned_cols=91 Identities=19% Similarity=0.131 Sum_probs=71.1
Q ss_pred cHHHHHHHHHhhc--CCcceEEEecchhhHHHHHHHHhcC-C-ceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCccc
Q 015454 258 WKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGY-N-FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWA 333 (406)
Q Consensus 258 ~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~ 333 (406)
.|.+....+++.. .++++||.++.+.....+.+.|+.. + ..+..+|++++..+|.+.+....+|+.+|+|+|.++
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA- 250 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA- 250 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee-
Confidence 4666665555433 2357999999999999999999764 3 579999999999999999999999999999999753
Q ss_pred CCCCCCCCCEEEEecC
Q 015454 334 RGLDVQQVSLVINYDL 349 (406)
Q Consensus 334 ~G~d~~~~~~vi~~~~ 349 (406)
.=..+++...||..+-
T Consensus 251 vFaP~~~LgLIIvdEE 266 (665)
T PRK14873 251 VFAPVEDLGLVAIWDD 266 (665)
T ss_pred EEeccCCCCEEEEEcC
Confidence 3345667777776543
No 398
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.30 E-value=1.2 Score=44.42 Aligned_cols=106 Identities=17% Similarity=0.138 Sum_probs=64.8
Q ss_pred cceEEEecchhhHHHHHHHHhcCC-------ceEEEeecCCCHHHHHHHHHHHhcC--------CCcEEEEcCcccCCCC
Q 015454 273 TQAVIFCNTKRKVDWLTEKMRGYN-------FTVSSMHGDMPQKERDAIMGEFRSG--------TTRVLITTDVWARGLD 337 (406)
Q Consensus 273 ~k~lif~~~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~~--------~~~vli~t~~~~~G~d 337 (406)
..+|||+++....+++....+..+ .+- ++..=-+..+-.+++.+|.++ -.-+.||-...++|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 459999999988777755554321 111 111111333444555555332 2234456678999999
Q ss_pred CCC--CCEEEEecCCCCh--------------------------------------hhhHhhhhhccCCCCceeEEEEec
Q 015454 338 VQQ--VSLVINYDLPNNR--------------------------------------ELYIHRIGRSGRFGRKGVAINFVK 377 (406)
Q Consensus 338 ~~~--~~~vi~~~~~~s~--------------------------------------~~~~Q~~GR~~R~~~~~~~~~~~~ 377 (406)
+.+ .+.||..+.|... ...-|.+||+-|..++=-.+++++
T Consensus 641 FsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D 720 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCD 720 (945)
T ss_pred ccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEee
Confidence 974 6789998887321 114599999999977744555666
Q ss_pred cC
Q 015454 378 ND 379 (406)
Q Consensus 378 ~~ 379 (406)
.+
T Consensus 721 ~R 722 (945)
T KOG1132|consen 721 DR 722 (945)
T ss_pred ch
Confidence 43
No 399
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.27 E-value=0.04 Score=44.25 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=16.3
Q ss_pred CCcceeecchhhHHh--ccCcHHHHHHHHH
Q 015454 174 RAIKLLVLDESDEML--SRGFKDQIYDVYR 201 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~--~~~~~~~~~~~~~ 201 (406)
...+++|+||+-.+- ...|...+..+++
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 456899999998764 3346666666665
No 400
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.23 E-value=0.31 Score=50.28 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=63.3
Q ss_pred CcceEEEecchhhHHHHHHHHhc----CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-ccCCCCCCCCCEEEE
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-WARGLDVQQVSLVIN 346 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~~~G~d~~~~~~vi~ 346 (406)
..+++|.+|+..-+...++.+++ .++++..++|..+..++..+++.+.+|+.+|+|+|.. +...+.+.++..+|+
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 36899999999999888777654 4678889999999999999999999999999999974 445677888888776
Q ss_pred e
Q 015454 347 Y 347 (406)
Q Consensus 347 ~ 347 (406)
-
T Consensus 580 D 580 (926)
T TIGR00580 580 D 580 (926)
T ss_pred e
Confidence 3
No 401
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.20 E-value=0.12 Score=50.69 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=17.3
Q ss_pred hhcCCcEEEECCCCCChhhHhH
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~ 88 (406)
+..|+.+.+.||+|||||...-
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~ 373 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIK 373 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4567788899999999985443
No 402
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.19 E-value=0.32 Score=45.59 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=15.3
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
.++++.||+|+|||..+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3689999999999965543
No 403
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.19 E-value=0.21 Score=49.95 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=15.4
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
.++++.||+|+|||..+..
T Consensus 53 ~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARI 71 (725)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4789999999999965543
No 404
>PRK06904 replicative DNA helicase; Validated
Probab=94.14 E-value=0.52 Score=44.82 Aligned_cols=116 Identities=17% Similarity=0.137 Sum_probs=58.4
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECC-cchHHhHH-
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGG-KSVGEDIR- 146 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 146 (406)
.|.=+++.|-||.|||..++-.+.+.... .+..++|++. .--..|+..++........ ...+..+ .-..+.+.
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~--~g~~Vl~fSl-EMs~~ql~~Rlla~~s~v~--~~~i~~g~~l~~~e~~~ 294 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMA--SEKPVLVFSL-EMPAEQIMMRMLASLSRVD--QTKIRTGQNLDQQDWAK 294 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEec-cCCHHHHHHHHHHhhCCCC--HHHhccCCCCCHHHHHH
Confidence 34557899999999996544333333222 1345777655 4446666666544322221 1122122 11122221
Q ss_pred ------HHhcCCCEEEe-----chHHHHHHHHccCCCcCCcceeecchhhHHhc
Q 015454 147 ------KLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (406)
Q Consensus 147 ------~~~~~~~iii~-----T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~ 189 (406)
.+....++.|. |+..+.............+++||||=.|.+..
T Consensus 295 ~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 295 ISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 22223446663 45555433332111123578999999987753
No 405
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.13 E-value=0.44 Score=45.51 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=14.1
Q ss_pred EEEECCCCCChhhHhHH
Q 015454 73 VIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~ 89 (406)
.++.||.|+|||.++..
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999966654
No 406
>PHA00350 putative assembly protein
Probab=94.11 E-value=0.27 Score=45.08 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=18.8
Q ss_pred EEEECCCCCChhhHhHH-HHHhhhccC
Q 015454 73 VIAQAQSGTGKTSMIAL-TVCQTVDTS 98 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~-~i~~~~~~~ 98 (406)
.++.|.+|||||+.++. .++.++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCC
Confidence 47899999999987775 355555433
No 407
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.02 E-value=0.71 Score=42.16 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=15.2
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
.+.+-+.|+.|.|||+..-
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd 80 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMD 80 (362)
T ss_pred CceEEEECCCCCchhHHHH
Confidence 3568999999999996433
No 408
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=93.97 E-value=0.29 Score=41.85 Aligned_cols=94 Identities=11% Similarity=0.186 Sum_probs=64.4
Q ss_pred HHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCC----CcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhh
Q 015454 287 WLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT----TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGR 362 (406)
Q Consensus 287 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~----~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR 362 (406)
.+.+.+.. ++.+..++++.+... -+|.++. ..|+|+-+.+++|+.++++...++.+.+....++.||.=-
T Consensus 102 ~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRw 175 (239)
T PF10593_consen 102 ELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRW 175 (239)
T ss_pred HHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhc
Confidence 34444444 677777876654432 3344443 6788999999999999999999999999988888887633
Q ss_pred cc-CCCCceeEEEEeccCcHHHHHH
Q 015454 363 SG-RFGRKGVAINFVKNDDIKILRD 386 (406)
Q Consensus 363 ~~-R~~~~~~~~~~~~~~~~~~~~~ 386 (406)
.| |.|-...|-+++++.-.+.+..
T Consensus 176 FGYR~gY~dl~Ri~~~~~l~~~f~~ 200 (239)
T PF10593_consen 176 FGYRPGYEDLCRIYMPEELYDWFRH 200 (239)
T ss_pred ccCCcccccceEEecCHHHHHHHHH
Confidence 33 3343567888887764444333
No 409
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.95 E-value=0.44 Score=45.47 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.2
Q ss_pred CCcEEEECCCCCChhhHh
Q 015454 70 GRDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~ 87 (406)
.+.+++.||+|+|||..+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 467999999999999643
No 410
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.95 E-value=0.14 Score=44.69 Aligned_cols=38 Identities=11% Similarity=0.253 Sum_probs=25.9
Q ss_pred hHHHHHhHHhhhc--CCcEEEECCCCCChhhHhHHHHHhhh
Q 015454 57 SAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTV 95 (406)
Q Consensus 57 ~~~Q~~~~~~i~~--~~~~il~~~tGsGKT~~~~~~i~~~~ 95 (406)
.+.|.+.+..++. +..+++.||||||||... ..++..+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 5567777766554 345899999999999544 3344444
No 411
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.90 E-value=0.64 Score=43.46 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=16.8
Q ss_pred EEEECCCCCChhhHhHHHHHh
Q 015454 73 VIAQAQSGTGKTSMIALTVCQ 93 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~ 93 (406)
+++++++|+|||.++.-.+..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999776654444
No 412
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.84 E-value=0.095 Score=47.25 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=27.0
Q ss_pred hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
+..+++++++|+||||||. ++-+++..+.. ..+++.+=.+.+
T Consensus 157 v~~~~nili~G~tgSGKTT-ll~aL~~~ip~---~~ri~tiEd~~E 198 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTT-FTNAALREIPA---IERLITVEDARE 198 (332)
T ss_pred HHcCCcEEEECCCCCCHHH-HHHHHHhhCCC---CCeEEEecCCCc
Confidence 3457899999999999994 44555555533 334555433333
No 413
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.80 E-value=0.33 Score=43.85 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=33.3
Q ss_pred hhhhHcCCCCCCCCCcceeeccCCcccccccccCCCCHHHHHHHHHCCCCC
Q 015454 5 TAMRRRGGGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEK 55 (406)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 55 (406)
+++.+..+-.+........+..............++++...+.|.+.||.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~kL~~~g~~t 54 (344)
T PLN03187 4 SAQADEGAQLQLVEAEEVDEEEDLFESIDKLISQGINAGDVKKLQDAGIYT 54 (344)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccCHHHHhhCCCCHHHHHHHHHcCCCc
Confidence 344444444444444333333444666777888899999999999999864
No 414
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.77 E-value=0.96 Score=36.47 Aligned_cols=140 Identities=16% Similarity=0.248 Sum_probs=69.3
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHH-HHHHHHhccCcceeEEEEECCcchHHhHHHHhcC
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT-EKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (406)
+++..+.|-|||.+++-.++..+.++. +++|+-=.+--...- ...+..+. ..+....+..+-........
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~---rv~vvQFiKg~~~~GE~~~~~~~~--~~v~~~~~~~g~tw~~~~~~---- 101 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGL---RVGVVQFIKGGWKYGEEAALEKFG--LGVEFHGMGEGFTWETQDRE---- 101 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCC---EEEEEEEeecCcchhHHHHHHhhc--cceeEEecCCceeCCCcCcH----
Confidence 778888999999999888888876543 455442211111111 11122221 11221111111111100000
Q ss_pred CCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCc--HHHHHHHHHhCCCCceEEEEEecCChHHHHHH
Q 015454 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMT 224 (406)
Q Consensus 152 ~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~ 224 (406)
.++ ......+..... .+.-..+++||+||.-.....++ .+.+..+++..|+...+|+..-..++.+.+..
T Consensus 102 ~d~--~aa~~~w~~a~~-~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~A 173 (198)
T COG2109 102 ADI--AAAKAGWEHAKE-ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELA 173 (198)
T ss_pred HHH--HHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHH
Confidence 011 222222222111 22234689999999998877664 35566667766666655554444566655543
No 415
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.69 E-value=0.56 Score=44.98 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=41.9
Q ss_pred HhHHhhhc-----CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 62 RAVMPIIK-----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 62 ~~~~~i~~-----~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
..+..++. |.-+++.+|+|+|||...+..+.+.+.. +.+++|++ ..+-..|...++..++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~---ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN---KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 34455554 3458999999999997666655555433 44678876 5777888888887765
No 416
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.67 E-value=0.87 Score=45.97 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=16.2
Q ss_pred CCcEEEECCCCCChhhHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~ 89 (406)
..+.++.||+|+|||..+-.
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 46899999999999965443
No 417
>PRK13764 ATPase; Provisional
Probab=93.66 E-value=0.14 Score=49.64 Aligned_cols=27 Identities=11% Similarity=0.366 Sum_probs=20.1
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhc
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~ 96 (406)
.+++++++||||||||... .+++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3578999999999999543 45555554
No 418
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.63 E-value=0.15 Score=45.63 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=14.8
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
.++++.||+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999995443
No 419
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.57 E-value=0.65 Score=41.60 Aligned_cols=59 Identities=12% Similarity=0.232 Sum_probs=33.8
Q ss_pred EEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEec
Q 015454 154 VVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (406)
Q Consensus 154 iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 215 (406)
|-|-....+.+.+..... ....+++|+|++|.+.... ...+...++.-+ ...++++|..
T Consensus 104 I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred CcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECC
Confidence 333343444444444333 3568999999999885543 334445555544 5556655544
No 420
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=93.55 E-value=0.12 Score=54.81 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=46.7
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccC--CCceeEEEEcCcHHHHHHHHHHHHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTS--SREVQALILSPTRELATQTEKVILA 123 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~--~~~~~~lil~P~~~l~~q~~~~~~~ 123 (406)
.+++++|.|..|||||++...-++..+... -.-..+|+++-|++-+.++..++..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHH
Confidence 357899999999999999988888887763 3556799999999999999888764
No 421
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.52 E-value=0.99 Score=40.84 Aligned_cols=41 Identities=10% Similarity=0.267 Sum_probs=25.9
Q ss_pred cCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEe
Q 015454 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 214 (406)
....+++|+||+|.+.... ...+...++.-++...+++.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 4567899999999886543 3345555555455555555444
No 422
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.51 E-value=0.35 Score=47.58 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=16.4
Q ss_pred CcEEEECCCCCChhhHhHHHH
Q 015454 71 RDVIAQAQSGTGKTSMIALTV 91 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i 91 (406)
...++.||.|+|||..+...+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 457999999999997665533
No 423
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.48 E-value=1.4 Score=39.03 Aligned_cols=56 Identities=14% Similarity=0.320 Sum_probs=32.7
Q ss_pred HHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCC---CCceEEEEEecC
Q 015454 161 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP---PDLQVVLISATL 216 (406)
Q Consensus 161 ~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~---~~~~~i~lSAT~ 216 (406)
.++..+..+....+.--++|+||+|..........+.+++.... .+.-++++|..+
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 44444444333333335688999998877766666666655443 233456666554
No 424
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.046 Score=47.56 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=32.0
Q ss_pred cccccCCCCHHHHHHHHHCCCC----------CChHHHHHhHHhh------hcCCcEEEECCCCCChhhHhH
Q 015454 33 TSFDAMGIKDDLLRGIYQYGFE----------KPSAIQQRAVMPI------IKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 33 ~~~~~~~l~~~i~~~l~~~~~~----------~l~~~Q~~~~~~i------~~~~~~il~~~tGsGKT~~~~ 88 (406)
.+...++-|..+..-|...=+. ..+.|=++.-..- +...|+++.+|||||||+.+.
T Consensus 44 ~~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 44 KELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred hhhccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHH
Confidence 4455677777887777652111 1122222221110 223579999999999996554
No 425
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.23 Score=43.52 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=38.0
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhc--cC-CCceeEEEEcCcH-----------HHHHHHHHHHHHhccCcceeEEEEEC
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVD--TS-SREVQALILSPTR-----------ELATQTEKVILAIGDFINIQAHACVG 137 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~--~~-~~~~~~lil~P~~-----------~l~~q~~~~~~~~~~~~~~~~~~~~~ 137 (406)
-++++||+|+||| ....++.+++. .. ......++=...- .|+.++...+..+....+.-+..+..
T Consensus 179 liLlhGPPGTGKT-SLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLID 257 (423)
T KOG0744|consen 179 LILLHGPPGTGKT-SLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLID 257 (423)
T ss_pred EEEEeCCCCCChh-HHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeH
Confidence 3789999999999 45555665551 11 1122234444444 44555556666666666666666554
Q ss_pred C
Q 015454 138 G 138 (406)
Q Consensus 138 ~ 138 (406)
.
T Consensus 258 E 258 (423)
T KOG0744|consen 258 E 258 (423)
T ss_pred H
Confidence 3
No 426
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.37 E-value=0.66 Score=45.04 Aligned_cols=85 Identities=20% Similarity=0.286 Sum_probs=67.3
Q ss_pred HHHHHHhhcCCcceEEEecch----hhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-ccCCC
Q 015454 262 TLCDLYDTLTITQAVIFCNTK----RKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-WARGL 336 (406)
Q Consensus 262 ~l~~~~~~~~~~k~lif~~~~----~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~~~G~ 336 (406)
.+..+..-..+.++.+.+||. .+.+.+.+.|...|+.+.++.|.+..+.|.++++...+|+++++|.|-+ +...+
T Consensus 301 ~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V 380 (677)
T COG1200 301 LLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKV 380 (677)
T ss_pred HHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcce
Confidence 333333333445889999985 4456677777788999999999999999999999999999999999975 55678
Q ss_pred CCCCCCEEEE
Q 015454 337 DVQQVSLVIN 346 (406)
Q Consensus 337 d~~~~~~vi~ 346 (406)
++.++-.||+
T Consensus 381 ~F~~LgLVIi 390 (677)
T COG1200 381 EFHNLGLVII 390 (677)
T ss_pred eecceeEEEE
Confidence 8887777775
No 427
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=93.35 E-value=0.27 Score=44.50 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=38.7
Q ss_pred HHHHHCCCCCChHHHHHhHHhhhc-CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHH
Q 015454 46 RGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (406)
Q Consensus 46 ~~l~~~~~~~l~~~Q~~~~~~i~~-~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l 113 (406)
..+...|+ +.+.+.+.+..+.+ +.++++.++||||||..+ ..++..+.. ..+++.+-.+.++
T Consensus 155 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~~---~~riv~iEd~~El 217 (340)
T TIGR03819 155 DELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVAP---DERIVLVEDAAEL 217 (340)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCCC---CCcEEEECCccee
Confidence 34444454 56677777766554 579999999999999533 334444432 3345666555554
No 428
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=2.3 Score=37.11 Aligned_cols=123 Identities=12% Similarity=0.182 Sum_probs=66.3
Q ss_pred HHhhhcCC-----cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECC
Q 015454 64 VMPIIKGR-----DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGG 138 (406)
Q Consensus 64 ~~~i~~~~-----~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 138 (406)
+|++..|+ .+++-+|+|+||+..+-... .+ .+ .+++-+.+..|+..|.-+-.++
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVA-----TE-An-STFFSvSSSDLvSKWmGESEkL-------------- 213 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVA-----TE-AN-STFFSVSSSDLVSKWMGESEKL-------------- 213 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHHHHHHH-----hh-cC-CceEEeehHHHHHHHhccHHHH--------------
Confidence 34555554 48999999999995332111 11 12 3678888888877765443332
Q ss_pred cchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCc---HHHHH----HHHHhCC----CCc
Q 015454 139 KSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF---KDQIY----DVYRYLP----PDL 207 (406)
Q Consensus 139 ~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~---~~~~~----~~~~~~~----~~~ 207 (406)
.+.+.. ....+..+.|.+||++.+..... ....+ .++-.+. ..-
T Consensus 214 ------------------------VknLFe-mARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 214 ------------------------VKNLFE-MARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred ------------------------HHHHHH-HHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCC
Confidence 221111 01123467899999998764321 11111 2222221 234
Q ss_pred eEEEEEecCChHHHHH-HHhcCCCCe
Q 015454 208 QVVLISATLPHEILEM-TTKFMTDPV 232 (406)
Q Consensus 208 ~~i~lSAT~~~~~~~~-~~~~~~~~~ 232 (406)
-++.+.||-.|+..+- +.+-+...+
T Consensus 269 gvLVLgATNiPw~LDsAIRRRFekRI 294 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRRRFEKRI 294 (439)
T ss_pred ceEEEecCCCchhHHHHHHHHhhcce
Confidence 5788999977765553 333333333
No 429
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.19 E-value=0.13 Score=45.20 Aligned_cols=49 Identities=10% Similarity=0.293 Sum_probs=30.2
Q ss_pred HHhHHh-hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 61 QRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 61 ~~~~~~-i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
.+.+.. +..+.+++++|+||||||... ..++..+... ..+++.+=...+
T Consensus 117 ~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i~~~--~~~iv~iEd~~E 166 (270)
T PF00437_consen 117 AEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEIPPE--DERIVTIEDPPE 166 (270)
T ss_dssp HHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHCHTT--TSEEEEEESSS-
T ss_pred HHHHhhccccceEEEEECCCccccchHH-HHHhhhcccc--ccceEEeccccc
Confidence 334433 344678999999999999554 4455555443 245666665555
No 430
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.19 E-value=0.54 Score=42.04 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=25.9
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHH
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (406)
.+.|+.+|+|+|||..+-+.+.... ....+.+=+..+.+-.++..+.+
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk---~~SyrfvelSAt~a~t~dvR~if 210 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSK---KHSYRFVELSATNAKTNDVRDIF 210 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcC---CCceEEEEEeccccchHHHHHHH
Confidence 3589999999999964443222211 11223444444555444444444
No 431
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.18 E-value=0.063 Score=43.57 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=28.9
Q ss_pred HHHhcCCCEEEechHHHHHHHHccCC--CcCCcceeecchhhHHhcc
Q 015454 146 RKLEHGVHVVSGTPGRVCDMIKRKTL--RTRAIKLLVLDESDEMLSR 190 (406)
Q Consensus 146 ~~~~~~~~iii~T~~~l~~~l~~~~~--~~~~~~~vV~DE~h~~~~~ 190 (406)
+.....++|+|+++..|.+-.....+ ...+-.+|||||||.+.+.
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 44455689999999988754333222 2234578999999987543
No 432
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.14 E-value=0.67 Score=43.61 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=57.0
Q ss_pred hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHH
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (406)
+..|.-+++.|+||+|||..++-.+.+.... .+..++|++. ..-..|+..++...... +....+..+.-...++.
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~--~g~~v~~fSl-Em~~~~l~~Rl~~~~~~--v~~~~~~~~~l~~~~~~ 265 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALR--EGKPVLFFSL-EMSAEQLGERLLASKSG--INTGNIRTGRFNDSDFN 265 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEEC-CCCHHHHHHHHHHHHcC--CCHHHHhcCCCCHHHHH
Confidence 3345568999999999996555444343322 2345777763 33455555554332211 22111111111111121
Q ss_pred HH------hcCCCEEEe-----chHHHHHHHHccCCCcCCcceeecchhhHHhc
Q 015454 147 KL------EHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (406)
Q Consensus 147 ~~------~~~~~iii~-----T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~ 189 (406)
.+ ....++.|. |.+.+.............+++||+|=.|.+..
T Consensus 266 ~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 266 RLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 11 122345553 33444433332111122588999999988753
No 433
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.11 E-value=0.96 Score=42.86 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=23.1
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
...+++|+||+|.+.... ...+...++.-+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
Confidence 457899999999886443 233444444444444444443
No 434
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.11 E-value=0.19 Score=44.88 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=28.1
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~ 115 (406)
|.-+.+.+|+|+|||..++..+...... +.+++|+..-..+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~---g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEcccchhHH
Confidence 3457899999999997666555544432 455777765444444
No 435
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.09 E-value=0.24 Score=42.58 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=21.4
Q ss_pred hhhcCCcEEEECCCCCChhhHhHHHHHhhhc
Q 015454 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (406)
Q Consensus 66 ~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~ 96 (406)
.+-+|+.+++.+|.|+|||.. +-.+.+.+.
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTL-lr~I~n~l~ 41 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTL-LQSIANAIT 41 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHH-HHHHHhccc
Confidence 345689999999999999953 333444443
No 436
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.99 E-value=1.2 Score=45.32 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=16.1
Q ss_pred CCcEEEECCCCCChhhHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~ 89 (406)
..+.++.||+|+|||..+-.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 35899999999999965443
No 437
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=92.97 E-value=0.33 Score=46.52 Aligned_cols=124 Identities=11% Similarity=0.136 Sum_probs=74.1
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHH----hccCcceeEEEEECCcchHHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA----IGDFINIQAHACVGGKSVGEDIR 146 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 146 (406)
+-.+...|-.-|||+ ++.|++..+..+-.+-++.|++..+-.++-+.+++.. +...... ...
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~v--i~~----------- 268 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHT--IEN----------- 268 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccce--eee-----------
Confidence 447888899999995 5566777776666788899999988777776666543 2211111 000
Q ss_pred HHhcCCCEEEechH-----HHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhC-CCCceEEEEEec
Q 015454 147 KLEHGVHVVSGTPG-----RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISAT 215 (406)
Q Consensus 147 ~~~~~~~iii~T~~-----~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~lSAT 215 (406)
.+..|.+.-|+ .+....+.+...-++++++++||||-+... .+..++..+ ..+.++|.+|.|
T Consensus 269 ---k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~~----a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 269 ---KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKKD----AFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ---cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCHH----HHHHhhhhhcccCceEEEEeCC
Confidence 11123332221 112222334555678999999999966433 333333333 246678888877
No 438
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.92 E-value=0.73 Score=48.83 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=61.7
Q ss_pred CCcceEEEecchhhHHHHHHHHhc----CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-ccCCCCCCCCCEEE
Q 015454 271 TITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-WARGLDVQQVSLVI 345 (406)
Q Consensus 271 ~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~~~G~d~~~~~~vi 345 (406)
.+.+++|.+|++..+..+++.+++ .++.+..+++..+..++..+++...+|..+|+|+|+. +...+++.++..+|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 346899999999999888887764 3567888999999999999999999999999999974 44456666777776
Q ss_pred E
Q 015454 346 N 346 (406)
Q Consensus 346 ~ 346 (406)
+
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 5
No 439
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.89 E-value=0.75 Score=47.37 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=15.8
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
.+.++.||+|+|||..+-.
T Consensus 200 ~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 5899999999999965543
No 440
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=92.88 E-value=0.2 Score=48.83 Aligned_cols=68 Identities=22% Similarity=0.082 Sum_probs=53.9
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC---CCceeEEEEcCcHHHHHHHHHHHH
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTRELATQTEKVIL 122 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~---~~~~~~lil~P~~~l~~q~~~~~~ 122 (406)
.+..-|..|+...+..+-.++++|+|+|||++-+.++-..+... .....++++|-|..-++|....+.
T Consensus 378 ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred eecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHH
Confidence 45667999998888888899999999999998887766665433 224569999999999999877664
No 441
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.87 E-value=0.13 Score=43.75 Aligned_cols=16 Identities=31% Similarity=0.634 Sum_probs=14.0
Q ss_pred CcEEEECCCCCChhhH
Q 015454 71 RDVIAQAQSGTGKTSM 86 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~ 86 (406)
..++|.||.|+|||..
T Consensus 21 ~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSL 36 (234)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred cEEEEEcCCcCCHHHH
Confidence 6789999999999964
No 442
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.82 E-value=0.24 Score=52.95 Aligned_cols=99 Identities=17% Similarity=0.164 Sum_probs=65.0
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeE--------EEEECCcc-
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA--------HACVGGKS- 140 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~--------~~~~~~~~- 140 (406)
..+++|.|+.|||||.+..--++..+..+....++++++-|+.-+.++.+++........... ....+...
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L~~~~~~~~~~l~~~l~~~~~~~~~ 89 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRLGEWAVLDDAELRARLEALEGKRPD 89 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Confidence 467999999999999888877777776665667899999999999999888765442210000 00001000
Q ss_pred ---hH----HhHHHHhcCCCEEEechHHHHHHHHc
Q 015454 141 ---VG----EDIRKLEHGVHVVSGTPGRVCDMIKR 168 (406)
Q Consensus 141 ---~~----~~~~~~~~~~~iii~T~~~l~~~l~~ 168 (406)
.. .....+.+...+-|.|-+.|...+.+
T Consensus 90 ~~~l~~ar~l~~~~l~~~~~l~I~Ti~sf~~~l~r 124 (1141)
T TIGR02784 90 AAKLAEARRLFARALETPGGLKIQTIHAFCESLLH 124 (1141)
T ss_pred hHHHHHHHHHHHHHHhCCCCceEeeHHHHHHHHHH
Confidence 00 01123345567889999999876654
No 443
>PRK08506 replicative DNA helicase; Provisional
Probab=92.80 E-value=0.74 Score=43.91 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=57.8
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH-
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL- 148 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 148 (406)
|.-+++.|.||.|||..++-.+.+... .+..+++++. ..-..|+..++...... +....+..+.-....+..+
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~---~g~~V~~fSl-EMs~~ql~~Rlla~~s~--v~~~~i~~~~l~~~e~~~~~ 265 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALN---QDKGVAFFSL-EMPAEQLMLRMLSAKTS--IPLQNLRTGDLDDDEWERLS 265 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHh---cCCcEEEEeC-cCCHHHHHHHHHHHhcC--CCHHHHhcCCCCHHHHHHHH
Confidence 455799999999999665554444432 2445777755 44466666665442222 2111111111111222111
Q ss_pred -----hcCCCEEEe-----chHHHHHHHHccCCCcCCcceeecchhhHHhc
Q 015454 149 -----EHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (406)
Q Consensus 149 -----~~~~~iii~-----T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~ 189 (406)
.....+.|- |++.+...++........+++||+|=.+.+..
T Consensus 266 ~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 266 DACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 122345443 44444443332111123578999999997753
No 444
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.76 E-value=0.34 Score=44.21 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=30.5
Q ss_pred hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (406)
+-+|+..++.||.|+|||.. +..+.+.+....... .+|++-..+-..+..+..+.
T Consensus 166 IGkGQR~lIvgppGvGKTTL-aK~Ian~I~~nhFDv-~~~VvLIgER~~EVtdiqrs 220 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVL-LQNIANSITTNHPEV-HLIVLLIDERPEEVTDMQRS 220 (416)
T ss_pred cccCceEEEeCCCCCChhHH-HHHHHHHHHhhcCCe-EEEEEEeCCchhHHHHHHHH
Confidence 33588999999999999953 334555554432233 23333333333344443333
No 445
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.73 E-value=0.62 Score=44.11 Aligned_cols=52 Identities=21% Similarity=0.424 Sum_probs=33.7
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
|.-+++.|++|+|||...+..+...... +.+++|+.. .+...|...+..+++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~-EEs~~qi~~ra~rlg 145 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSG-EESLQQIKMRAIRLG 145 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEEC-cCCHHHHHHHHHHcC
Confidence 3458999999999996655544433322 346888876 445667666665543
No 446
>PRK08840 replicative DNA helicase; Provisional
Probab=92.73 E-value=1.1 Score=42.50 Aligned_cols=117 Identities=19% Similarity=0.153 Sum_probs=57.1
Q ss_pred hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHH
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (406)
+..|.=+++.|.||.|||..++-.+.+.... .+..++|++. .--..|+..++...... +....+..+.-..+++.
T Consensus 214 ~~~g~LiviaarPg~GKTafalnia~~~a~~--~~~~v~~fSl-EMs~~ql~~Rlla~~s~--v~~~~i~~~~l~~~e~~ 288 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMD--QDKPVLIFSL-EMPAEQLMMRMLASLSR--VDQTKIRTGQLDDEDWA 288 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHHHHHHHHHh--CCCeEEEEec-cCCHHHHHHHHHHhhCC--CCHHHHhcCCCCHHHHH
Confidence 3445568899999999996554333333222 1345666655 34456666555433222 11111112211122222
Q ss_pred H-------HhcCCCEEEe-----chHHHHHHHHccCCCcCCcceeecchhhHHh
Q 015454 147 K-------LEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (406)
Q Consensus 147 ~-------~~~~~~iii~-----T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~ 188 (406)
. +.....+.|. |...+.............+++||+|=.|.+.
T Consensus 289 ~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 289 RISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 2 2123345553 3334433222211112347899999999874
No 447
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.71 E-value=0.48 Score=38.16 Aligned_cols=47 Identities=11% Similarity=0.172 Sum_probs=29.6
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (406)
.+++.|++|||||..+...+. .. +..++++......-.++.+++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~-~~-----~~~~~~iat~~~~~~e~~~ri~~h 49 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAA-QS-----GLQVLYIATAQPFDDEMAARIAHH 49 (170)
T ss_pred EEEEECCCCccHHHHHHHHHH-Hc-----CCCcEeCcCCCCChHHHHHHHHHH
Confidence 478999999999965544332 21 223566666566666666666543
No 448
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.67 E-value=0.21 Score=43.60 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=37.6
Q ss_pred hcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
-.|..+++.|++|+|||...+-.+.+.+.. +.+++|++- .+...+..+.+..++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~---ge~vlyvs~-~e~~~~l~~~~~~~g 74 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE---GEPVLYVST-EESPEELLENARSFG 74 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc---CCcEEEEEe-cCCHHHHHHHHHHcC
Confidence 345779999999999997666666665544 445777765 555666666666554
No 449
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.64 E-value=0.16 Score=39.70 Aligned_cols=114 Identities=14% Similarity=0.212 Sum_probs=58.4
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhc
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (406)
..+++.+++|+|||..... +...+....-. -.=+++| +++.-+...++.+..+..+....-....
T Consensus 6 mki~ITG~PGvGKtTl~~k-i~e~L~~~g~k-vgGf~t~----------EVR~gGkR~GF~Ivdl~tg~~~~la~~~--- 70 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLK-IAEKLREKGYK-VGGFITP----------EVREGGKRIGFKIVDLATGEEGILARVG--- 70 (179)
T ss_pred eEEEEeCCCCccHHHHHHH-HHHHHHhcCce-eeeEEee----------eeecCCeEeeeEEEEccCCceEEEEEcC---
Confidence 4589999999999965443 55555443222 2345555 3444555666766665533221100000
Q ss_pred CCCEEEech----HHHH----HHHHccCCCcCCcceeecchhhHHh--ccCcHHHHHHHHHh
Q 015454 151 GVHVVSGTP----GRVC----DMIKRKTLRTRAIKLLVLDESDEML--SRGFKDQIYDVYRY 202 (406)
Q Consensus 151 ~~~iii~T~----~~l~----~~l~~~~~~~~~~~~vV~DE~h~~~--~~~~~~~~~~~~~~ 202 (406)
....-|+-| +.|. ..+++. +..-+++|+||+--+. +..|...+..+++.
T Consensus 71 ~~~~rvGkY~V~v~~le~i~~~al~rA---~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 71 FSRPRVGKYGVNVEGLEEIAIPALRRA---LEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred CCCcccceEEeeHHHHHHHhHHHHHHH---hhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 011122222 2222 122221 2235899999998654 34466666666654
No 450
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.64 E-value=1 Score=46.57 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=15.8
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
.+.++.||+|.|||..+-.
T Consensus 195 ~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 6799999999999965543
No 451
>PRK07004 replicative DNA helicase; Provisional
Probab=92.59 E-value=0.62 Score=44.25 Aligned_cols=116 Identities=17% Similarity=0.162 Sum_probs=56.3
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (406)
.|.-+++.|.||+|||..++-.+.+.... .+..+++++. .--..|+..++-.... ++....+..+.-..+++..+
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~--~~~~v~~fSl-EM~~~ql~~R~la~~~--~v~~~~i~~g~l~~~e~~~~ 286 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVE--YGLPVAVFSM-EMPGTQLAMRMLGSVG--RLDQHRMRTGRLTDEDWPKL 286 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHH--cCCeEEEEeC-CCCHHHHHHHHHHhhc--CCCHHHHhcCCCCHHHHHHH
Confidence 34558999999999996555433333222 1334666654 4445565555532211 11111121222222222211
Q ss_pred ------hcCCCEEEe-----chHHHHHHHHccCCCcCCcceeecchhhHHhc
Q 015454 149 ------EHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (406)
Q Consensus 149 ------~~~~~iii~-----T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~ 189 (406)
.....+.|. |+..+.....+.......+++||+|=.|.+..
T Consensus 287 ~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 287 THAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 123456553 34444333222111123478999999998853
No 452
>PRK08006 replicative DNA helicase; Provisional
Probab=92.57 E-value=1.3 Score=42.07 Aligned_cols=115 Identities=19% Similarity=0.142 Sum_probs=57.9
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHH-
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK- 147 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 147 (406)
.|.=++|.|-||.|||..++-.+.+.... .+..++|++. .--..|+..++...... +....+..+.-..+++..
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~--~g~~V~~fSl-EM~~~ql~~Rlla~~~~--v~~~~i~~~~l~~~e~~~~ 297 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAML--QDKPVLIFSL-EMPGEQIMMRMLASLSR--VDQTRIRTGQLDDEDWARI 297 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCeEEEEec-cCCHHHHHHHHHHHhcC--CCHHHhhcCCCCHHHHHHH
Confidence 34557899999999996555434343322 2345666655 34456666665443222 222222222212222221
Q ss_pred ------HhcCCCEEEe-----chHHHHHHHHccCCCcCCcceeecchhhHHh
Q 015454 148 ------LEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (406)
Q Consensus 148 ------~~~~~~iii~-----T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~ 188 (406)
+.....+.|. |+..+.............+++||||=.|.+.
T Consensus 298 ~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 298 SGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 1123455553 3444443332211112358999999999875
No 453
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.55 E-value=0.19 Score=44.94 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=29.4
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q 116 (406)
|.-+.+.+|+|+|||..++..+.+... .+..++|+..-..+-.+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~---~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK---LGGTVAFIDAEHALDPV 98 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEECccccHHHH
Confidence 345789999999999666655544432 24567888775555543
No 454
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=92.55 E-value=0.15 Score=48.34 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=24.6
Q ss_pred cCCcceeecchhhHHhccCcHHHHHHHHHhCC-CCceEEEEEec
Q 015454 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVVLISAT 215 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~lSAT 215 (406)
..++++.|+||+|.++...|... ++.+- +...++++=||
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNAL----LKTLEEPP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNAL----LKTLEEPPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHH----hcccccCccCeEEEEec
Confidence 46689999999999876655443 33332 22345555555
No 455
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.54 E-value=0.54 Score=47.73 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=15.7
Q ss_pred cCCcEEEECCCCCChhhHh
Q 015454 69 KGRDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~ 87 (406)
.++.+++.||+|+|||..+
T Consensus 211 ~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCceEEEECCCCCChHHHH
Confidence 3577999999999999543
No 456
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.52 E-value=0.23 Score=44.39 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=35.6
Q ss_pred CChHHHHH-hHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 55 KPSAIQQR-AVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 55 ~l~~~Q~~-~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
.+.+.|.. .|..+..+++++++++|||||| .++.+++..+.. ..+++.+=.+.+
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKT-t~lnall~~Ip~---~~rivtIEdt~E 181 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKT-TLLNALLDFIPP---EERIVTIEDTPE 181 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHH-HHHHHHHHhCCc---hhcEEEEecccc
Confidence 45666654 4555667899999999999999 445556555533 334555555444
No 457
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.49 E-value=0.74 Score=37.03 Aligned_cols=46 Identities=7% Similarity=0.121 Sum_probs=32.0
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (406)
+++.|++|||||..+...+.. .+.+++|+.-...+-.++.+.+.+.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~em~~rI~~H 47 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDEMAERIARH 47 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHHHHHHHHHH
Confidence 578999999999655543322 2346788877777777777776553
No 458
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.49 E-value=4.6 Score=33.44 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=52.0
Q ss_pred CCcceEEEecchhhHHHHHHHHhcC----CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-----ccC-CCCCCC
Q 015454 271 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----WAR-GLDVQQ 340 (406)
Q Consensus 271 ~~~k~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~~~-G~d~~~ 340 (406)
...+++|.+++...+....+.+... +..+..++|+.+..+..... .+..+|+|+|+. +.. -.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL----KRGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCCChhh
Confidence 3458999999999888777666543 67788899988776544333 267789999952 222 256777
Q ss_pred CCEEEEecC
Q 015454 341 VSLVINYDL 349 (406)
Q Consensus 341 ~~~vi~~~~ 349 (406)
++.+|+-+.
T Consensus 144 l~~lIvDE~ 152 (203)
T cd00268 144 VKYLVLDEA 152 (203)
T ss_pred CCEEEEeCh
Confidence 888776443
No 459
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=0.86 Score=42.89 Aligned_cols=45 Identities=20% Similarity=0.407 Sum_probs=26.1
Q ss_pred cCCcceeecchhhHHhccC-----cHH----HHHHHHHhCCCCceEEEEEecCC
Q 015454 173 TRAIKLLVLDESDEMLSRG-----FKD----QIYDVYRYLPPDLQVVLISATLP 217 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~-----~~~----~~~~~~~~~~~~~~~i~lSAT~~ 217 (406)
.+.+++||+|+...+.++. |.. .+.-+++..|++.+.+++=+|-+
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS 649 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTS 649 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEeccc
Confidence 3457899999999988763 222 22233444455544455555533
No 460
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.44 E-value=0.21 Score=41.50 Aligned_cols=35 Identities=14% Similarity=0.387 Sum_probs=21.1
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcC
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P 109 (406)
++++||||||||... ..++..+.... +.+++.+-.
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~~-~~~i~t~e~ 38 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKNK-THHILTIED 38 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhcC-CcEEEEEcC
Confidence 689999999999654 33444443322 234444443
No 461
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.43 E-value=0.066 Score=56.95 Aligned_cols=93 Identities=23% Similarity=0.351 Sum_probs=73.7
Q ss_pred ceEEEecchhhHHHHHHHHhcCCc-eEEEeecCCCH-----------HHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCC
Q 015454 274 QAVIFCNTKRKVDWLTEKMRGYNF-TVSSMHGDMPQ-----------KERDAIMGEFRSGTTRVLITTDVWARGLDVQQV 341 (406)
Q Consensus 274 k~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~-----------~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 341 (406)
-.++|++.+..+....+.++.... .+..+.|.+.+ ..+.+++..|....+.+|++|.++++|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 468999998888888777765421 22223333211 134678899999999999999999999999999
Q ss_pred CEEEEecCCCChhhhHhhhhhccCC
Q 015454 342 SLVINYDLPNNRELYIHRIGRSGRF 366 (406)
Q Consensus 342 ~~vi~~~~~~s~~~~~Q~~GR~~R~ 366 (406)
+.++.++.|.....|+|..||+-+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999999554
No 462
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=92.41 E-value=0.96 Score=36.41 Aligned_cols=140 Identities=14% Similarity=0.151 Sum_probs=69.3
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHH-HHHHhccCcceeEEEEECCcchHHhHHHHhc
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK-VILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (406)
-+.+-.+.|-|||.+++-..+.++..+ .+++++-=.+.-...-.. .+..+ .++.+..+..+...... .
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~G---~rV~iiQFlKg~~~~GE~~~l~~~---~~v~~~~~g~~~~~~~~-----~ 91 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQG---TPVLIVQFLKGGIQQGPDRPIQLG---QNLDWVRCDLPRCLDTP-----H 91 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcCC---CEEEEEEEecCCCcchHHHHHHhC---CCcEEEECCCCCeeeCC-----C
Confidence 366778899999999988887777554 345554322221111111 12221 12333222111000000 0
Q ss_pred CCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCc--HHHHHHHHHhCCCCceEEEEEecCChHHHHH
Q 015454 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEM 223 (406)
Q Consensus 151 ~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~ 223 (406)
....-.......+..... ......+++||+||+-...+.++ ...+..+++..|+..-+|+..-.+++++.+.
T Consensus 92 ~~~~~~~~~~~~~~~a~~-~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~ 165 (178)
T PRK07414 92 LDESEKKALQELWQYTQA-VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAI 165 (178)
T ss_pred cCHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 000000011122222111 22245689999999998887764 3566677777776666665555566655554
No 463
>PF12846 AAA_10: AAA-like domain
Probab=92.39 E-value=0.17 Score=45.01 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=27.2
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
+.|+++.|+||+|||..+...+...+..+ ..++++=|..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g---~~~~i~D~~g~ 40 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG---PRVVIFDPKGD 40 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC---CCEEEEcCCch
Confidence 36799999999999977775544444333 44666655433
No 464
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.30 E-value=2.6 Score=36.82 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=14.0
Q ss_pred CcEEEECCCCCChhhH
Q 015454 71 RDVIAQAQSGTGKTSM 86 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~ 86 (406)
+++++.+|+|+|||..
T Consensus 112 ~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL 127 (270)
T ss_pred eEEEEEcCCCCCHHHH
Confidence 5789999999999953
No 465
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.13 E-value=0.43 Score=41.54 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=57.5
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (406)
.|.=+++.|.||.|||..++-.+.+..... +..++|++.-.. ..++..++-....... ...+..+.-...++...
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~--~~~vly~SlEm~-~~~l~~R~la~~s~v~--~~~i~~g~l~~~e~~~~ 92 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG--GYPVLYFSLEMS-EEELAARLLARLSGVP--YNKIRSGDLSDEEFERL 92 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT--SSEEEEEESSS--HHHHHHHHHHHHHTST--HHHHHCCGCHHHHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc--CCeEEEEcCCCC-HHHHHHHHHHHhhcch--hhhhhccccCHHHHHHH
Confidence 345589999999999966665555554433 356888877322 3333333322211111 11111111111111111
Q ss_pred ------hcCCCEEE-e----chHHHHHHHHccCCCcCCcceeecchhhHHhcc
Q 015454 149 ------EHGVHVVS-G----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (406)
Q Consensus 149 ------~~~~~iii-~----T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~ 190 (406)
.....++| . |++.+...+.........+++||+|=.|.+...
T Consensus 93 ~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 93 QAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 11223443 2 344555444432222256889999999988663
No 466
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.10 E-value=0.43 Score=48.45 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=15.2
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
.+.+++.||+|+|||..+-
T Consensus 487 ~~giLL~GppGtGKT~lak 505 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAK 505 (733)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3568999999999996443
No 467
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=92.09 E-value=0.78 Score=47.08 Aligned_cols=151 Identities=17% Similarity=0.196 Sum_probs=81.9
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCC-CCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEE
Q 015454 27 EGVEAITSFDAMGIKDDLLRGIYQYGF-EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (406)
Q Consensus 27 ~~~~~~~~~~~~~l~~~i~~~l~~~~~-~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~l 105 (406)
........|++.|.-+.++..|+..-+ .-++|-+.+-+ .+..-+.+++++|+|+|||+.+-....+.. .+ ..++.
T Consensus 256 ~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~araLa~~~s-~~--~~kis 331 (1080)
T KOG0732|consen 256 LSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMARALAAACS-RG--NRKIS 331 (1080)
T ss_pred hhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHHHhhhhhhc-cc--ccccc
Confidence 344556778888877778777776422 22344333322 233346699999999999965433222211 11 11111
Q ss_pred EEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhh
Q 015454 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESD 185 (406)
Q Consensus 106 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h 185 (406)
+. +++ + ... -.--|+..++=+.++... ........+.+||++
T Consensus 332 ff-------------mrk-g------------aD~-----------lskwvgEaERqlrllFee-A~k~qPSIIffdeId 373 (1080)
T KOG0732|consen 332 FF-------------MRK-G------------ADC-----------LSKWVGEAERQLRLLFEE-AQKTQPSIIFFDEID 373 (1080)
T ss_pred hh-------------hhc-C------------chh-----------hccccCcHHHHHHHHHHH-HhccCceEEeccccc
Confidence 10 000 0 000 011245555555554432 122346789999999
Q ss_pred HHhccC----------cHHHHHHHHHhCCCCceEEEEEecCChH
Q 015454 186 EMLSRG----------FKDQIYDVYRYLPPDLQVVLISATLPHE 219 (406)
Q Consensus 186 ~~~~~~----------~~~~~~~~~~~~~~~~~~i~lSAT~~~~ 219 (406)
.+.... ....+..++.-+....|+++++||..++
T Consensus 374 GlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 374 GLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPD 417 (1080)
T ss_pred cccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcc
Confidence 653221 2344455666667788999999997554
No 468
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.06 E-value=0.23 Score=42.21 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=23.7
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcC
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P 109 (406)
-+.++.|++|||||. ++..++..+... -..+++++|
T Consensus 14 fr~viIG~sGSGKT~-li~~lL~~~~~~--f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTT-LIKSLLYYLRHK--FDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHH-HHHHHHHhhccc--CCEEEEEec
Confidence 368999999999994 444455444332 245666677
No 469
>PRK09354 recA recombinase A; Provisional
Probab=92.01 E-value=0.28 Score=44.20 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=29.2
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHH
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~ 115 (406)
.-+.+.+|+|+|||...+..+.+.... +..++|+..-..+-.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~---G~~~~yId~E~s~~~ 102 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDP 102 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEECCccchHH
Confidence 457899999999997776655555432 456777777555554
No 470
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.00 E-value=0.83 Score=40.48 Aligned_cols=131 Identities=18% Similarity=0.300 Sum_probs=63.7
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCC
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGV 152 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (406)
+++.|..|+|||....-........ +.++++.+--. ...--.++++.++...+..+..-..|..
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~---g~~VllaA~DT-FRAaAiEQL~~w~er~gv~vI~~~~G~D------------ 205 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQ---GKSVLLAAGDT-FRAAAIEQLEVWGERLGVPVISGKEGAD------------ 205 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHC---CCeEEEEecch-HHHHHHHHHHHHHHHhCCeEEccCCCCC------------
Confidence 6899999999998776544333322 34455555421 1111223333344444455443221211
Q ss_pred CEEEechHHH-HHHHHccCCCcCCcceeecchhhHHhcc-CcHHHHHHHHHhCCCCc------eEEEEEecCChHHHHHH
Q 015454 153 HVVSGTPGRV-CDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDL------QVVLISATLPHEILEMT 224 (406)
Q Consensus 153 ~iii~T~~~l-~~~l~~~~~~~~~~~~vV~DE~h~~~~~-~~~~~~~~~~~~~~~~~------~~i~lSAT~~~~~~~~~ 224 (406)
|..+ .+.++. -..+++++|++|=|-++-+. +....+..+.+...+.. -++.+-||.........
T Consensus 206 ------pAaVafDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA 277 (340)
T COG0552 206 ------PAAVAFDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA 277 (340)
T ss_pred ------cHHHHHHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH
Confidence 1111 111111 11244667777777666543 23445555554443322 35555888877655554
Q ss_pred Hhc
Q 015454 225 TKF 227 (406)
Q Consensus 225 ~~~ 227 (406)
+.+
T Consensus 278 k~F 280 (340)
T COG0552 278 KIF 280 (340)
T ss_pred HHH
Confidence 443
No 471
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.97 E-value=2.8 Score=40.16 Aligned_cols=77 Identities=6% Similarity=0.205 Sum_probs=62.4
Q ss_pred cceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-ccCC------C-CCCCCCEE
Q 015454 273 TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-WARG------L-DVQQVSLV 344 (406)
Q Consensus 273 ~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~~~G------~-d~~~~~~v 344 (406)
+.+||.+|+++.+....+.|...|+.+..+++..+..++..++.....++.+++++|+- +... + ....+..+
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~i 131 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLI 131 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEE
Confidence 57899999999999899999999999999999999999999999999999999999973 2222 1 34566776
Q ss_pred EEecC
Q 015454 345 INYDL 349 (406)
Q Consensus 345 i~~~~ 349 (406)
|+-+.
T Consensus 132 ViDEa 136 (470)
T TIGR00614 132 AVDEA 136 (470)
T ss_pred EEeCC
Confidence 65443
No 472
>PRK09087 hypothetical protein; Validated
Probab=91.96 E-value=0.42 Score=40.55 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=14.5
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
..+++.||+|+|||....
T Consensus 45 ~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 448999999999995433
No 473
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.96 E-value=1.4 Score=40.67 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=15.2
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
+..++.||+|+|||..+..
T Consensus 40 ~~~L~~G~~G~GKt~~a~~ 58 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARI 58 (367)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588999999999965554
No 474
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=91.93 E-value=0.26 Score=41.22 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=24.0
Q ss_pred hhcCCcEEEECCCCCChhhHhHHHHHhhhcc-CCCceeEEEEcCcH
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTR 111 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~-~~~~~~~lil~P~~ 111 (406)
+....|+++.|+||||||......+...+.. ...... ++++..+
T Consensus 35 l~~~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~-l~iiD~k 79 (205)
T PF01580_consen 35 LKKNPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQ-LYIIDPK 79 (205)
T ss_dssp GGGS-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEE-EEEE-TT
T ss_pred cCCCceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccE-EEEEcCC
Confidence 3445689999999999997666555555442 223333 4444433
No 475
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.88 E-value=0.17 Score=46.92 Aligned_cols=48 Identities=21% Similarity=0.160 Sum_probs=35.7
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (406)
|+++.||||||||..+++|-+... +..++++=|--++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----CCCEEEEccchhHHHHHHHHHHHc
Confidence 578999999999988876655432 235788888888887777666554
No 476
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.87 E-value=0.49 Score=44.43 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.1
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
+.+++-+|+|+|||+.+-
T Consensus 257 KGiLLyGPPGTGKTLiAR 274 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIAR 274 (744)
T ss_pred eeEEEECCCCCChhHHHH
Confidence 568999999999996543
No 477
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.86 E-value=1.3 Score=45.88 Aligned_cols=77 Identities=16% Similarity=0.308 Sum_probs=63.6
Q ss_pred cCCcceEEEecchhhHH----HHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcC-cccCCCCCCCCCEE
Q 015454 270 LTITQAVIFCNTKRKVD----WLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VWARGLDVQQVSLV 344 (406)
Q Consensus 270 ~~~~k~lif~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~v 344 (406)
..+++|.|.+||.=-|+ .+.+.++...+++..++.-.+.++...+++...+|+++|+|+|- .++.++-+.++..+
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLl 720 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLL 720 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeE
Confidence 33468999999976554 45555556688899999999999999999999999999999995 67788888888888
Q ss_pred EE
Q 015454 345 IN 346 (406)
Q Consensus 345 i~ 346 (406)
|+
T Consensus 721 II 722 (1139)
T COG1197 721 II 722 (1139)
T ss_pred EE
Confidence 86
No 478
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.84 E-value=1 Score=41.65 Aligned_cols=79 Identities=19% Similarity=0.187 Sum_probs=43.3
Q ss_pred cceeecchhhHHhccC--------cHHHHHHHH----HhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCcccc
Q 015454 176 IKLLVLDESDEMLSRG--------FKDQIYDVY----RYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTL 243 (406)
Q Consensus 176 ~~~vV~DE~h~~~~~~--------~~~~~~~~~----~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (406)
+.++++||+|.+.... .+.....++ ....++.+++++.||=.++..+....-
T Consensus 246 PsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R---------------- 309 (428)
T KOG0740|consen 246 PSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR---------------- 309 (428)
T ss_pred CeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH----------------
Confidence 6788899999886432 111222222 222345689999999655433332211
Q ss_pred CCceEEEEEecccccHHHHHHHHHhhc
Q 015454 244 EGIKQFFVAVEREEWKFDTLCDLYDTL 270 (406)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (406)
......|...+..+.....+..++..+
T Consensus 310 rf~kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 310 RFVKRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred HhhceeeecCCCHHHHHHHHHHHHHhC
Confidence 111233445555555667777777776
No 479
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=0.97 Score=41.23 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=58.6
Q ss_pred hHHhhhcC-----CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEEC
Q 015454 63 AVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVG 137 (406)
Q Consensus 63 ~~~~i~~~-----~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 137 (406)
-+..++-| .-+++-+.+|.|||...+- +...+... + ++||++- .+...|+.-+..+++-..
T Consensus 81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQ-va~~lA~~--~-~vLYVsG-EES~~QiklRA~RL~~~~--------- 146 (456)
T COG1066 81 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQ-VAARLAKR--G-KVLYVSG-EESLQQIKLRADRLGLPT--------- 146 (456)
T ss_pred HHHhhhcCCcccccEEEEccCCCCCHHHHHHH-HHHHHHhc--C-cEEEEeC-CcCHHHHHHHHHHhCCCc---------
Confidence 34455543 4478999999999955444 44444332 2 6899887 677888888888875221
Q ss_pred CcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhcc
Q 015454 138 GKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (406)
Q Consensus 138 ~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~ 190 (406)
.++.+...-.+.+.+.. ....+.+++|+|-++.+...
T Consensus 147 --------------~~l~l~aEt~~e~I~~~--l~~~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 147 --------------NNLYLLAETNLEDIIAE--LEQEKPDLVVIDSIQTLYSE 183 (456)
T ss_pred --------------cceEEehhcCHHHHHHH--HHhcCCCEEEEeccceeecc
Confidence 23333332222222211 11245688999999887544
No 480
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.71 E-value=0.18 Score=44.01 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=21.3
Q ss_pred HhHHhhhcCCcEEEECCCCCChhhHhHH
Q 015454 62 RAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 62 ~~~~~i~~~~~~il~~~tGsGKT~~~~~ 89 (406)
++...+..+.++++.||+|+|||..+..
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 3444555688999999999999966543
No 481
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.67 E-value=0.42 Score=39.38 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=34.6
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhcc-------CCCceeEEEEcCcHHHHHHHHHHHHHhcc
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDT-------SSREVQALILSPTRELATQTEKVILAIGD 126 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~-------~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (406)
.|.-+++.||+|+|||...+-.+...... ...+.+++|+..-.. ..++.+++.....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 46668999999999996665544444421 114567888876444 6677777776553
No 482
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.63 E-value=0.16 Score=32.83 Aligned_cols=18 Identities=22% Similarity=0.613 Sum_probs=14.7
Q ss_pred CCcEEEECCCCCChhhHh
Q 015454 70 GRDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~ 87 (406)
|..+++.+++|||||..+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346999999999999543
No 483
>PRK14701 reverse gyrase; Provisional
Probab=91.63 E-value=1.6 Score=47.95 Aligned_cols=61 Identities=20% Similarity=0.306 Sum_probs=52.7
Q ss_pred CCcceEEEecchhhHHHHHHHHhc------CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 015454 271 TITQAVIFCNTKRKVDWLTEKMRG------YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV 331 (406)
Q Consensus 271 ~~~k~lif~~~~~~~~~l~~~l~~------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~ 331 (406)
...+++|.+|+++-+..+.+.|+. .+..+..+||+++..++...++.+.+|+.+|||+|+.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 335899999999999888888876 2467788999999999999999999999999999974
No 484
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.60 E-value=0.39 Score=43.02 Aligned_cols=28 Identities=21% Similarity=0.550 Sum_probs=20.1
Q ss_pred hhcCCcEEEECCCCCChhhHhHHHHHhhh
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~~~i~~~~ 95 (406)
+..+.++++.||||||||... -.++..+
T Consensus 141 v~~~~~ili~G~tGsGKTTll-~al~~~~ 168 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFL-KSLVDEI 168 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHH-HHHHccC
Confidence 345789999999999999543 3344443
No 485
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.55 E-value=0.9 Score=45.21 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=14.9
Q ss_pred EEEECCCCCChhhHhHHH
Q 015454 73 VIAQAQSGTGKTSMIALT 90 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~ 90 (406)
.++.||.|+|||.++...
T Consensus 43 YLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 689999999999766543
No 486
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=91.53 E-value=0.28 Score=44.62 Aligned_cols=41 Identities=10% Similarity=0.272 Sum_probs=25.3
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
+..++++||||||||... ..++..+... .+.+++.+-...+
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~-~~~~i~tiEdp~E 162 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKN-AAGHIITIEDPIE 162 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcC-CCCEEEEEcCChh
Confidence 567899999999999654 3444444332 2334555544344
No 487
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.47 E-value=5 Score=39.06 Aligned_cols=184 Identities=17% Similarity=0.213 Sum_probs=93.6
Q ss_pred CcccccccccCCCCHHHHHHHHHC---CCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeE
Q 015454 28 GVEAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA 104 (406)
Q Consensus 28 ~~~~~~~~~~~~l~~~i~~~l~~~---~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~ 104 (406)
-.-+..+|++.|=-+++++.|+.. ....|-.|.+-. +..-+.+++.+|+|+|||+.+-. +.+. . + .-
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lAka-lAne----~-~-~n 495 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLAKA-LANE----A-G-MN 495 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHHHH-Hhhh----h-c-CC
Confidence 344556788888777888877642 222232222222 12346799999999999964332 2111 1 1 13
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchh
Q 015454 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (406)
Q Consensus 105 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~ 184 (406)
++-++.-+|..-|. +-.++....+.+.-- .-...++.|||+
T Consensus 496 FlsvkgpEL~sk~v--------------------------------------GeSEr~ir~iF~kAR-~~aP~IiFfDEi 536 (693)
T KOG0730|consen 496 FLSVKGPELFSKYV--------------------------------------GESERAIREVFRKAR-QVAPCIIFFDEI 536 (693)
T ss_pred eeeccCHHHHHHhc--------------------------------------CchHHHHHHHHHHHh-hcCCeEEehhhH
Confidence 45555555433322 222333332222111 111378999999
Q ss_pred hHHhccC-------cHHHHHHHHHhCC---CCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEec
Q 015454 185 DEMLSRG-------FKDQIYDVYRYLP---PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE 254 (406)
Q Consensus 185 h~~~~~~-------~~~~~~~~~~~~~---~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (406)
+.+.... ....+..++..+. ....++.+-||=.++..+.. +..|- --....|...+
T Consensus 537 Dsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A---LlRPG-----------RlD~iiyVplP 602 (693)
T KOG0730|consen 537 DALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA---LLRPG-----------RLDRIIYVPLP 602 (693)
T ss_pred HhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH---HcCCc-----------ccceeEeecCc
Confidence 9886432 1223333333332 23457888888555322221 11111 11133455566
Q ss_pred ccccHHHHHHHHHhhcCCcc
Q 015454 255 REEWKFDTLCDLYDTLTITQ 274 (406)
Q Consensus 255 ~~~~~~~~l~~~~~~~~~~k 274 (406)
......+.+....++.+..+
T Consensus 603 D~~aR~~Ilk~~~kkmp~~~ 622 (693)
T KOG0730|consen 603 DLEARLEILKQCAKKMPFSE 622 (693)
T ss_pred cHHHHHHHHHHHHhcCCCCc
Confidence 66667777777776665443
No 488
>PRK09165 replicative DNA helicase; Provisional
Probab=91.46 E-value=0.66 Score=44.54 Aligned_cols=115 Identities=18% Similarity=0.138 Sum_probs=57.8
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccC------------CCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEEC
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTS------------SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVG 137 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~------------~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 137 (406)
|.-+++.|.||.|||..++-.+.+..... ..+..++|++. ..-..|+..++........ ...+..
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s~v~--~~~i~~ 293 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQSEIS--SSKIRR 293 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhcCCC--HHHHhc
Confidence 34579999999999965554343332211 12455777654 4446677666644322221 111222
Q ss_pred CcchHHhHHHH------hcCCCEEEe-----chHHHHHHHHccCCCcCCcceeecchhhHHh
Q 015454 138 GKSVGEDIRKL------EHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (406)
Q Consensus 138 ~~~~~~~~~~~------~~~~~iii~-----T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~ 188 (406)
+.-..+++..+ .....+.|- |.+.+...+..... ...+++||||=.|.+.
T Consensus 294 ~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 294 GKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 22122222211 122345543 34455443332111 2347899999999875
No 489
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.33 E-value=1.4 Score=43.45 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=25.1
Q ss_pred cCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEec
Q 015454 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 215 (406)
+...+++|+||+|.+.... ...+...++..+....+| +.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifI-L~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFI-LATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEE-EEeC
Confidence 4568899999999886543 334455555544444444 4444
No 490
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.32 E-value=1.2 Score=34.72 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=21.8
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhC
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~ 203 (406)
.+.+++++||.-.-.+......+...++.+
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 456899999998777666666666666655
No 491
>PRK08760 replicative DNA helicase; Provisional
Probab=91.25 E-value=1.5 Score=41.93 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=56.9
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH-
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL- 148 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 148 (406)
|.=++|.|.||.|||..++-.+.+..... +..+++++. ..-..|+..++.......... .+..+.-..+++..+
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~--~i~~g~l~~~e~~~~~ 303 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFSM-EMSASQLAMRLISSNGRINAQ--RLRTGALEDEDWARVT 303 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEec-cCCHHHHHHHHHHhhCCCcHH--HHhcCCCCHHHHHHHH
Confidence 44578999999999965554444433222 334666655 344566666665443222211 111222122222111
Q ss_pred -----hcCCCEEEe-----chHHHHHHHHccCCCcCCcceeecchhhHHh
Q 015454 149 -----EHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (406)
Q Consensus 149 -----~~~~~iii~-----T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~ 188 (406)
-....++|. |++.+........ ....+++||+|=.+.+.
T Consensus 304 ~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 304 GAIKMLKETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcC
Confidence 122345444 3445443332211 12347899999999774
No 492
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=91.23 E-value=0.27 Score=48.37 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=25.6
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEec
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 215 (406)
.+.+++++||+-.-.+......+.+.+....++.-++.+|=.
T Consensus 486 ~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~ 527 (571)
T TIGR02203 486 KDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHR 527 (571)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehh
Confidence 446788888888777666666565555554444445555443
No 493
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.17 E-value=0.24 Score=47.38 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=38.0
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
.|+++.||||||||..+++|.+-.. +..+++.=|--++...+...+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~-----~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY-----PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc-----cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 4799999999999998887765332 1147888888888888777776654
No 494
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.14 E-value=1.1 Score=36.32 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=26.8
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEe
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 214 (406)
.+.+++++||.-.-.+......+..++..+..+..+++.|-
T Consensus 115 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh 155 (178)
T cd03247 115 QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITH 155 (178)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 55789999999877776656666666655544444444443
No 495
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=91.12 E-value=1.3 Score=33.35 Aligned_cols=51 Identities=12% Similarity=0.079 Sum_probs=31.5
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccCCCceeEEE-----EcCcHHHHHHHHHHHHH
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI-----LSPTRELATQTEKVILA 123 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~li-----l~P~~~l~~q~~~~~~~ 123 (406)
.-+.|+||+|||++.-+.+-+....+.+...+-. -.|....+.+..++++.
T Consensus 56 lSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~ 111 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKS 111 (127)
T ss_pred EEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHH
Confidence 3489999999999888766555544444333333 33455555555555544
No 496
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=91.12 E-value=2.1 Score=40.46 Aligned_cols=112 Identities=19% Similarity=0.131 Sum_probs=55.5
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhH----
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI---- 145 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 145 (406)
|.-+++.|+||+|||...+-.+.+..... +..+++++. ..-..+...++........ ...+..+.-...++
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~Sl-Em~~~~i~~R~~~~~~~v~--~~~~~~g~l~~~~~~~~~ 269 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSL-EMSAEQLAMRMLSSESRVD--SQKLRTGKLSDEDWEKLT 269 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeC-cCCHHHHHHHHHHHhcCCC--HHHhccCCCCHHHHHHHH
Confidence 45579999999999965554444433221 345677765 3345555555544322221 11111121111112
Q ss_pred ---HHHhcCCCEEEe-----chHHHHHHHHccCCCcCCcceeecchhhHHh
Q 015454 146 ---RKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (406)
Q Consensus 146 ---~~~~~~~~iii~-----T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~ 188 (406)
..+. ...+.|. |.+.+...+..... ...+++||+|=.+.+.
T Consensus 270 ~a~~~l~-~~~l~i~d~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 270 SAAGKLS-EAPLYIDDTPGLTITELRAKARRLKR-EHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 1222 2345542 34444443332111 1247899999998874
No 497
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.11 E-value=4.8 Score=38.42 Aligned_cols=102 Identities=19% Similarity=0.173 Sum_probs=73.5
Q ss_pred EECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHH---H-hc
Q 015454 75 AQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---L-EH 150 (406)
Q Consensus 75 l~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~ 150 (406)
-+.-.+.||+..-++++.+.+..+- .+.+||.+-+.+-+.|+++.+. ...++.+...+++....++... + ..
T Consensus 362 ~QelvF~gse~~K~lA~rq~v~~g~-~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g 437 (593)
T KOG0344|consen 362 DQELVFCGSEKGKLLALRQLVASGF-KPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIG 437 (593)
T ss_pred hhhheeeecchhHHHHHHHHHhccC-CCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhcc
Confidence 3344577888888887777776654 4558999999999999999887 3456778888887665444322 2 24
Q ss_pred CCCEEEechHHHHHHHHccCCCcCCcceeecchhhH
Q 015454 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (406)
Q Consensus 151 ~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~ 186 (406)
...++||| .++.+ ..++.++.+||-+++..
T Consensus 438 ~IwvLicT-----dll~R-GiDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 438 KIWVLICT-----DLLAR-GIDFKGVNLVINYDFPQ 467 (593)
T ss_pred CeeEEEeh-----hhhhc-cccccCcceEEecCCCc
Confidence 47889999 55554 48888999999987753
No 498
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=91.11 E-value=0.44 Score=48.13 Aligned_cols=69 Identities=20% Similarity=0.252 Sum_probs=55.6
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (406)
..++-|.+++..-..-+.+.+.+|+|+|||-.+.- ++.-++++.+..+++|++.+..-.+|..+.+.+.
T Consensus 738 ~ft~~qveai~sg~qpgltmvvgppgtgktd~avq-il~~lyhn~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 738 KFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQ-ILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred ccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhh-hhhhhhhcCCCcceEEEEecccchhHHHHHHHhc
Confidence 45788988887766668899999999999966554 5555666777888999999999999988877654
No 499
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=91.07 E-value=0.17 Score=49.57 Aligned_cols=64 Identities=22% Similarity=0.320 Sum_probs=51.5
Q ss_pred HHHHhcCCCcEEEEcCcccCCCCCCCCCE--------EEEecCCCChhhhHhhhhhccCCCCc-eeEEEEecc
Q 015454 315 MGEFRSGTTRVLITTDVWARGLDVQQVSL--------VINYDLPNNRELYIHRIGRSGRFGRK-GVAINFVKN 378 (406)
Q Consensus 315 ~~~f~~~~~~vli~t~~~~~G~d~~~~~~--------vi~~~~~~s~~~~~Q~~GR~~R~~~~-~~~~~~~~~ 378 (406)
-++|-+|+-.|-|.+.+++-|+.+..-+. =|.+.+|||...-+|..||.+|-++- ++-++|+..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIs 922 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLIS 922 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEeh
Confidence 46788999999999999999999864443 35688999999999999999998765 555555554
No 500
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.06 E-value=0.24 Score=42.13 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=14.5
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
.-+++.|+|||||+....
T Consensus 128 GLviiVGaTGSGKSTtmA 145 (375)
T COG5008 128 GLVIIVGATGSGKSTTMA 145 (375)
T ss_pred ceEEEECCCCCCchhhHH
Confidence 347999999999996544
Done!