Query 015454
Match_columns 406
No_of_seqs 181 out of 1956
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 12:54:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2.7E-62 9.1E-67 457.7 45.6 384 20-405 43-434 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 8.2E-63 2.8E-67 460.3 42.0 392 15-406 19-410 (410)
3 3eiq_A Eukaryotic initiation f 100.0 2E-60 6.9E-65 444.9 38.8 381 26-406 33-414 (414)
4 2i4i_A ATP-dependent RNA helic 100.0 1.7E-59 6E-64 438.9 41.3 379 26-405 8-409 (417)
5 1s2m_A Putative ATP-dependent 100.0 4.7E-59 1.6E-63 433.6 42.8 373 30-404 18-390 (400)
6 1xti_A Probable ATP-dependent 100.0 2.5E-57 8.4E-62 420.8 43.0 370 33-403 8-382 (391)
7 1fuu_A Yeast initiation factor 100.0 1.3E-59 4.4E-64 436.7 23.1 377 29-406 17-393 (394)
8 3fht_A ATP-dependent RNA helic 100.0 1.6E-56 5.5E-61 418.3 40.6 374 26-402 18-403 (412)
9 3pey_A ATP-dependent RNA helic 100.0 2.1E-56 7.2E-61 415.2 41.1 366 31-400 3-379 (395)
10 1hv8_A Putative ATP-dependent 100.0 2.9E-55 1E-59 403.5 42.8 360 32-399 5-365 (367)
11 3fmp_B ATP-dependent RNA helic 100.0 5.2E-56 1.8E-60 421.8 22.5 369 31-402 90-470 (479)
12 3sqw_A ATP-dependent RNA helic 100.0 7.8E-54 2.7E-58 415.0 37.1 375 23-397 7-416 (579)
13 2z0m_A 337AA long hypothetical 100.0 2.2E-52 7.5E-57 379.8 37.9 336 40-393 1-336 (337)
14 3i5x_A ATP-dependent RNA helic 100.0 1.4E-52 4.8E-57 406.3 37.5 358 40-397 79-467 (563)
15 3fho_A ATP-dependent RNA helic 100.0 2E-54 7E-59 411.8 23.5 369 30-402 116-494 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 8.3E-51 2.8E-55 390.2 34.0 339 36-387 24-382 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 4.4E-50 1.5E-54 381.7 32.6 339 33-388 2-352 (523)
18 3oiy_A Reverse gyrase helicase 100.0 6.6E-49 2.3E-53 366.4 25.7 332 43-398 9-384 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 7.6E-46 2.6E-50 368.0 33.1 354 33-402 8-430 (715)
20 2zj8_A DNA helicase, putative 100.0 2.2E-46 7.4E-51 371.6 28.4 352 34-401 2-407 (720)
21 2ykg_A Probable ATP-dependent 100.0 3.9E-47 1.3E-51 377.3 21.2 354 45-400 3-541 (696)
22 4a2p_A RIG-I, retinoic acid in 100.0 2.6E-45 8.8E-50 355.6 29.5 329 53-383 5-512 (556)
23 3tbk_A RIG-I helicase domain; 100.0 2.2E-45 7.7E-50 356.0 29.0 331 55-387 4-515 (555)
24 2p6r_A Afuhel308 helicase; pro 100.0 3.3E-46 1.1E-50 369.3 23.5 336 34-381 2-390 (702)
25 3l9o_A ATP-dependent RNA helic 100.0 1.6E-45 5.3E-50 374.9 26.8 350 32-399 161-615 (1108)
26 1wp9_A ATP-dependent RNA helic 100.0 2.8E-44 9.4E-49 343.1 30.6 324 55-383 9-479 (494)
27 4a2q_A RIG-I, retinoic acid in 100.0 2.2E-44 7.5E-49 360.6 30.0 331 51-383 244-753 (797)
28 2xgj_A ATP-dependent RNA helic 100.0 1.5E-43 5.1E-48 357.4 35.1 329 50-398 82-516 (1010)
29 4a2w_A RIG-I, retinoic acid in 100.0 2.2E-43 7.6E-48 356.6 30.0 330 51-382 244-752 (936)
30 4ddu_A Reverse gyrase; topoiso 100.0 9.7E-44 3.3E-48 361.6 27.1 320 51-392 75-503 (1104)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 4.4E-44 1.5E-48 364.5 20.9 320 50-393 53-468 (1054)
32 4a4z_A Antiviral helicase SKI2 100.0 6.4E-42 2.2E-46 345.6 30.6 311 51-377 36-490 (997)
33 4gl2_A Interferon-induced heli 100.0 3E-43 1E-47 349.6 18.3 322 55-379 7-519 (699)
34 1gm5_A RECG; helicase, replica 100.0 5.5E-42 1.9E-46 335.7 21.4 326 42-387 356-705 (780)
35 2eyq_A TRCF, transcription-rep 100.0 6.2E-40 2.1E-44 335.9 34.7 323 38-379 586-922 (1151)
36 4f92_B U5 small nuclear ribonu 100.0 4.9E-40 1.7E-44 345.6 34.2 341 40-387 911-1316(1724)
37 2oca_A DAR protein, ATP-depend 100.0 3.2E-41 1.1E-45 322.8 21.4 309 55-377 113-453 (510)
38 4f92_B U5 small nuclear ribonu 100.0 1.2E-40 4.2E-45 350.1 26.3 330 52-387 76-481 (1724)
39 1tf5_A Preprotein translocase 100.0 3.8E-39 1.3E-43 309.7 30.1 322 50-381 79-547 (844)
40 2fwr_A DNA repair protein RAD2 100.0 5.5E-40 1.9E-44 311.2 19.4 293 55-379 93-454 (472)
41 2whx_A Serine protease/ntpase/ 100.0 3E-40 1E-44 318.0 13.2 323 38-400 155-502 (618)
42 2xau_A PRE-mRNA-splicing facto 100.0 1.1E-38 3.6E-43 314.7 21.8 336 30-381 69-445 (773)
43 1yks_A Genome polyprotein [con 100.0 3E-40 1E-44 307.8 7.6 288 66-401 4-324 (440)
44 2jlq_A Serine protease subunit 100.0 1.2E-38 4.2E-43 298.3 18.3 287 52-378 1-310 (451)
45 2fsf_A Preprotein translocase 100.0 1.7E-37 6E-42 297.4 23.9 321 51-381 71-585 (853)
46 2wv9_A Flavivirin protease NS2 100.0 1.3E-38 4.3E-43 308.4 15.4 306 55-399 215-556 (673)
47 1nkt_A Preprotein translocase 100.0 5E-36 1.7E-40 287.7 32.0 321 51-381 108-619 (922)
48 3h1t_A Type I site-specific re 100.0 6.8E-38 2.3E-42 304.5 17.3 309 55-378 178-557 (590)
49 3o8b_A HCV NS3 protease/helica 100.0 2.3E-38 7.9E-43 301.8 12.8 292 56-397 218-536 (666)
50 3fe2_A Probable ATP-dependent 100.0 5.7E-36 1.9E-40 257.8 25.3 217 23-239 19-240 (242)
51 2v6i_A RNA helicase; membrane, 100.0 1.3E-36 4.3E-41 282.8 21.3 269 69-376 1-288 (431)
52 2z83_A Helicase/nucleoside tri 100.0 2.2E-37 7.5E-42 290.2 15.4 275 62-379 13-313 (459)
53 3dmq_A RNA polymerase-associat 100.0 9.1E-37 3.1E-41 308.8 20.9 332 55-391 153-625 (968)
54 1vec_A ATP-dependent RNA helic 100.0 6.4E-35 2.2E-39 245.4 25.9 202 33-234 3-205 (206)
55 3bor_A Human initiation factor 100.0 1.6E-35 5.6E-40 254.0 21.6 211 26-236 23-234 (237)
56 3ber_A Probable ATP-dependent 100.0 4.6E-35 1.6E-39 252.6 23.9 209 28-236 38-247 (249)
57 1z63_A Helicase of the SNF2/RA 100.0 4.9E-35 1.7E-39 279.3 26.3 310 55-380 37-454 (500)
58 1qde_A EIF4A, translation init 100.0 6.3E-35 2.2E-39 248.7 24.0 211 28-239 9-219 (224)
59 1wrb_A DJVLGB; RNA helicase, D 100.0 3.2E-35 1.1E-39 255.1 22.3 218 30-247 20-250 (253)
60 3iuy_A Probable ATP-dependent 100.0 6.5E-35 2.2E-39 249.1 23.0 210 25-235 11-227 (228)
61 1q0u_A Bstdead; DEAD protein, 100.0 3.5E-35 1.2E-39 249.1 21.0 205 33-237 4-212 (219)
62 2oxc_A Probable ATP-dependent 100.0 1.8E-34 6.1E-39 246.5 24.9 208 27-235 18-227 (230)
63 2gxq_A Heat resistant RNA depe 100.0 1.4E-33 4.8E-38 237.4 25.0 201 34-236 2-205 (207)
64 3rc3_A ATP-dependent RNA helic 100.0 2.2E-34 7.5E-39 277.9 22.2 287 65-391 150-456 (677)
65 2pl3_A Probable ATP-dependent 100.0 1.8E-33 6.3E-38 241.5 25.7 207 29-236 21-232 (236)
66 1t6n_A Probable ATP-dependent 100.0 1.3E-33 4.5E-38 239.8 23.9 203 32-234 13-218 (220)
67 3fmo_B ATP-dependent RNA helic 100.0 1.4E-33 4.7E-38 249.6 23.8 206 29-237 88-298 (300)
68 1z3i_X Similar to RAD54-like; 100.0 2.5E-32 8.5E-37 266.1 32.5 313 55-379 55-528 (644)
69 3mwy_W Chromo domain-containin 100.0 2.9E-33 9.8E-38 279.4 25.4 330 55-392 236-699 (800)
70 3ly5_A ATP-dependent RNA helic 100.0 3.4E-33 1.2E-37 242.8 22.6 201 31-231 50-257 (262)
71 3dkp_A Probable ATP-dependent 100.0 1.9E-32 6.4E-37 236.6 21.3 215 24-238 16-242 (245)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 4.1E-32 1.4E-36 272.6 25.5 309 55-377 271-707 (1038)
73 3jux_A Protein translocase sub 100.0 1.4E-29 4.9E-34 238.0 35.1 317 51-380 72-588 (822)
74 1fuk_A Eukaryotic initiation f 100.0 1.2E-28 4.1E-33 198.7 19.2 162 245-406 3-164 (165)
75 2hjv_A ATP-dependent RNA helic 100.0 1.1E-27 3.7E-32 192.6 20.1 158 241-399 5-162 (163)
76 2p6n_A ATP-dependent RNA helic 100.0 3.3E-28 1.1E-32 200.1 16.5 178 226-405 10-188 (191)
77 2rb4_A ATP-dependent RNA helic 100.0 8.6E-28 2.9E-32 195.7 18.8 162 241-402 3-170 (175)
78 1t5i_A C_terminal domain of A 100.0 7.3E-28 2.5E-32 195.1 17.6 159 244-403 4-163 (172)
79 2jgn_A DBX, DDX3, ATP-dependen 100.0 5.7E-28 2E-32 197.9 15.7 165 240-405 14-179 (185)
80 1c4o_A DNA nucleotide excision 100.0 2.1E-26 7.3E-31 224.0 25.7 116 271-387 438-558 (664)
81 2ipc_A Preprotein translocase 99.9 6.9E-25 2.3E-29 210.3 32.5 130 51-188 76-215 (997)
82 2d7d_A Uvrabc system protein B 99.9 1.2E-25 4.1E-30 218.6 24.8 130 271-401 444-587 (661)
83 3eaq_A Heat resistant RNA depe 99.9 6.1E-26 2.1E-30 190.2 18.8 145 256-400 15-159 (212)
84 3i32_A Heat resistant RNA depe 99.9 4E-25 1.4E-29 193.6 19.1 154 246-400 3-156 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 3.2E-27 1.1E-31 191.2 0.0 155 245-399 3-157 (170)
86 3b6e_A Interferon-induced heli 99.9 9E-25 3.1E-29 184.8 11.9 164 51-215 29-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 1.1E-23 3.8E-28 201.1 17.2 111 262-379 375-521 (540)
88 3crv_A XPD/RAD3 related DNA he 99.9 3.1E-21 1.1E-25 184.9 31.2 308 55-380 3-532 (551)
89 1rif_A DAR protein, DNA helica 99.9 1.5E-22 5.2E-27 177.9 10.1 153 55-219 113-265 (282)
90 3llm_A ATP-dependent RNA helic 99.8 2E-20 6.7E-25 159.7 15.5 157 55-220 61-222 (235)
91 4a15_A XPD helicase, ATP-depen 99.8 3.1E-19 1E-23 172.3 23.6 112 263-379 440-584 (620)
92 2fz4_A DNA repair protein RAD2 99.8 6.9E-20 2.4E-24 156.0 14.2 138 55-219 93-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 7.2E-19 2.5E-23 152.2 11.5 124 256-379 94-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 8.1E-09 2.8E-13 99.7 8.5 146 57-215 151-298 (608)
95 3lfu_A DNA helicase II; SF1 he 98.5 7.1E-06 2.4E-10 80.4 20.5 70 54-125 8-78 (647)
96 4b3f_X DNA-binding protein smu 98.5 1.4E-07 4.7E-12 92.2 7.9 68 55-125 189-257 (646)
97 2gk6_A Regulator of nonsense t 98.5 1.1E-06 3.7E-11 85.3 13.9 69 54-124 179-247 (624)
98 2xzl_A ATP-dependent helicase 98.5 1.1E-06 3.7E-11 87.3 13.6 70 54-125 359-428 (802)
99 3e1s_A Exodeoxyribonuclease V, 98.5 9E-07 3.1E-11 84.6 11.6 123 55-215 189-315 (574)
100 3upu_A ATP-dependent DNA helic 98.5 8.1E-07 2.8E-11 83.0 10.8 71 49-121 19-94 (459)
101 2wjy_A Regulator of nonsense t 98.4 2.1E-06 7.2E-11 85.1 13.4 69 54-124 355-423 (800)
102 3hgt_A HDA1 complex subunit 3; 98.2 1.9E-05 6.6E-10 68.4 13.1 123 256-383 107-241 (328)
103 2o0j_A Terminase, DNA packagin 97.6 0.00077 2.6E-08 60.6 12.5 70 55-125 163-232 (385)
104 3vkw_A Replicase large subunit 97.5 0.00034 1.2E-08 63.7 8.4 106 73-215 164-269 (446)
105 1uaa_A REP helicase, protein ( 97.4 0.0002 6.8E-09 70.3 6.7 69 55-125 2-71 (673)
106 3cpe_A Terminase, DNA packagin 97.4 0.0016 5.6E-08 62.6 12.3 146 55-218 163-315 (592)
107 1pjr_A PCRA; DNA repair, DNA r 97.2 0.00058 2E-08 67.5 8.0 69 54-124 10-79 (724)
108 3u4q_A ATP-dependent helicase/ 97.1 0.00084 2.9E-08 70.3 7.9 106 55-168 10-118 (1232)
109 1a5t_A Delta prime, HOLB; zinc 97.1 0.0012 4.2E-08 58.7 7.8 35 56-90 3-44 (334)
110 3ec2_A DNA replication protein 97.1 0.0015 5.2E-08 52.2 7.7 20 69-88 37-56 (180)
111 2kjq_A DNAA-related protein; s 97.0 0.00042 1.4E-08 53.6 3.1 21 69-89 35-55 (149)
112 2b8t_A Thymidine kinase; deoxy 96.9 0.0035 1.2E-07 51.8 8.7 113 70-215 12-124 (223)
113 2orw_A Thymidine kinase; TMTK, 96.9 0.0011 3.8E-08 53.2 5.3 39 70-111 3-41 (184)
114 1l8q_A Chromosomal replication 96.8 0.0054 1.9E-07 54.2 9.7 36 70-108 37-72 (324)
115 3te6_A Regulatory protein SIR3 96.8 0.0046 1.6E-07 54.1 8.3 25 70-95 45-69 (318)
116 2chg_A Replication factor C sm 96.7 0.012 4.1E-07 48.4 10.7 40 174-214 101-140 (226)
117 2z4s_A Chromosomal replication 96.7 0.0053 1.8E-07 56.7 9.1 38 71-109 131-168 (440)
118 1xx6_A Thymidine kinase; NESG, 96.7 0.0018 6.2E-08 52.2 5.2 39 70-111 8-46 (191)
119 2j9r_A Thymidine kinase; TK1, 96.7 0.0031 1.1E-07 51.4 6.3 39 71-112 29-67 (214)
120 2v1u_A Cell division control p 96.6 0.013 4.4E-07 53.0 10.8 20 70-89 44-63 (387)
121 2orv_A Thymidine kinase; TP4A 96.5 0.007 2.4E-07 49.8 7.1 40 70-112 19-58 (234)
122 1w4r_A Thymidine kinase; type 96.4 0.0074 2.5E-07 48.3 6.5 38 70-110 20-57 (195)
123 2qby_B CDC6 homolog 3, cell di 96.3 0.0079 2.7E-07 54.5 7.5 36 178-214 136-172 (384)
124 3co5_A Putative two-component 96.3 0.0042 1.4E-07 47.5 4.8 19 68-86 25-43 (143)
125 2zpa_A Uncharacterized protein 96.2 0.012 4.1E-07 56.5 8.2 112 55-216 175-288 (671)
126 2w58_A DNAI, primosome compone 96.2 0.026 8.9E-07 45.8 9.2 24 71-95 55-78 (202)
127 3bos_A Putative DNA replicatio 96.1 0.0092 3.2E-07 49.9 6.5 20 69-88 51-70 (242)
128 1d2n_A N-ethylmaleimide-sensit 96.1 0.041 1.4E-06 47.1 10.6 18 71-88 65-82 (272)
129 3e2i_A Thymidine kinase; Zn-bi 96.1 0.0063 2.2E-07 49.4 4.8 40 70-112 28-67 (219)
130 2qby_A CDC6 homolog 1, cell di 96.1 0.029 9.8E-07 50.6 9.9 19 70-88 45-63 (386)
131 1fnn_A CDC6P, cell division co 96.0 0.0098 3.4E-07 53.9 6.1 17 72-88 46-62 (389)
132 1iqp_A RFCS; clamp loader, ext 95.9 0.021 7.1E-07 50.3 8.0 39 174-213 109-147 (327)
133 3h4m_A Proteasome-activating n 95.9 0.05 1.7E-06 46.8 10.2 55 32-88 13-69 (285)
134 1sxj_E Activator 1 40 kDa subu 95.9 0.075 2.6E-06 47.3 11.4 42 174-216 133-174 (354)
135 3syl_A Protein CBBX; photosynt 95.8 0.0072 2.5E-07 52.9 4.4 18 71-88 68-85 (309)
136 2p65_A Hypothetical protein PF 95.7 0.04 1.4E-06 43.8 8.1 20 70-89 43-62 (187)
137 3u61_B DNA polymerase accessor 95.5 0.017 5.9E-07 50.9 5.8 41 174-215 104-144 (324)
138 1sxj_C Activator 1 40 kDa subu 95.5 0.052 1.8E-06 48.2 8.7 39 174-213 109-147 (340)
139 1g5t_A COB(I)alamin adenosyltr 95.4 0.093 3.2E-06 42.0 9.1 140 70-223 28-170 (196)
140 1sxj_D Activator 1 41 kDa subu 95.4 0.027 9.3E-07 50.2 6.7 40 174-214 132-171 (353)
141 2gno_A DNA polymerase III, gam 95.2 0.05 1.7E-06 47.4 7.5 40 173-213 80-119 (305)
142 1sxj_B Activator 1 37 kDa subu 95.1 0.039 1.4E-06 48.4 6.7 38 175-213 107-144 (323)
143 1njg_A DNA polymerase III subu 95.0 0.19 6.4E-06 41.7 10.5 17 72-88 47-63 (250)
144 3kl4_A SRP54, signal recogniti 94.7 0.088 3E-06 48.1 7.9 51 174-224 178-231 (433)
145 1gm5_A RECG; helicase, replica 94.7 0.083 2.9E-06 52.3 8.2 79 272-350 417-500 (780)
146 2dr3_A UPF0273 protein PH0284; 94.5 0.098 3.3E-06 43.8 7.3 53 68-124 21-73 (247)
147 3pfi_A Holliday junction ATP-d 94.0 0.085 2.9E-06 46.7 6.3 18 71-88 56-73 (338)
148 1w5s_A Origin recognition comp 93.9 0.093 3.2E-06 47.8 6.4 19 71-89 51-71 (412)
149 3oiy_A Reverse gyrase helicase 93.7 0.25 8.6E-06 45.0 9.0 79 271-349 63-148 (414)
150 2chq_A Replication factor C sm 93.5 0.047 1.6E-06 47.8 3.5 17 72-88 40-56 (319)
151 1jr3_A DNA polymerase III subu 93.3 0.23 7.8E-06 44.5 7.9 40 173-213 117-156 (373)
152 3pvs_A Replication-associated 92.6 0.23 7.9E-06 45.7 6.8 18 71-88 51-68 (447)
153 2q6t_A DNAB replication FORK h 92.4 0.18 6.1E-06 46.6 5.9 49 70-121 200-248 (444)
154 2r6a_A DNAB helicase, replicat 92.4 0.22 7.5E-06 46.1 6.5 50 69-121 202-251 (454)
155 3dm5_A SRP54, signal recogniti 92.4 1 3.5E-05 41.2 10.6 34 72-108 102-135 (443)
156 3io5_A Recombination and repai 92.4 0.067 2.3E-06 46.4 2.7 90 72-188 30-124 (333)
157 2l82_A Designed protein OR32; 92.3 1.6 5.5E-05 30.2 9.0 115 275-395 5-129 (162)
158 3hu3_A Transitional endoplasmi 92.3 0.29 9.8E-06 45.7 7.1 43 176-218 298-350 (489)
159 3u4q_B ATP-dependent helicase/ 92.0 0.24 8.2E-06 51.8 6.9 48 73-121 4-51 (1166)
160 2ehv_A Hypothetical protein PH 91.9 0.14 4.7E-06 42.9 4.3 23 67-89 27-49 (251)
161 4b4t_M 26S protease regulatory 91.9 0.064 2.2E-06 48.9 2.1 56 29-87 174-232 (434)
162 3n70_A Transport activator; si 91.6 0.16 5.6E-06 38.5 4.0 20 69-88 23-42 (145)
163 1t6n_A Probable ATP-dependent 91.0 0.65 2.2E-05 37.9 7.3 74 273-349 83-167 (220)
164 3ber_A Probable ATP-dependent 91.0 1.5 5.2E-05 36.6 9.7 75 271-349 110-195 (249)
165 2fna_A Conserved hypothetical 90.9 6.8 0.00023 34.2 14.6 53 159-216 124-179 (357)
166 2eyq_A TRCF, transcription-rep 90.6 1.2 4.1E-05 46.3 10.3 98 249-346 627-731 (1151)
167 4ddu_A Reverse gyrase; topoiso 90.3 0.52 1.8E-05 48.7 7.3 79 271-349 120-205 (1104)
168 2oap_1 GSPE-2, type II secreti 90.0 0.7 2.4E-05 43.3 7.3 46 47-95 238-284 (511)
169 1p9r_A General secretion pathw 89.9 0.47 1.6E-05 43.2 5.9 37 58-95 153-191 (418)
170 1oyw_A RECQ helicase, ATP-depe 89.5 0.78 2.7E-05 43.3 7.3 59 272-330 65-123 (523)
171 3b85_A Phosphate starvation-in 89.4 0.33 1.1E-05 39.4 4.2 32 57-88 9-40 (208)
172 4b4t_J 26S protease regulatory 89.3 0.2 6.7E-06 45.1 2.9 55 30-87 142-199 (405)
173 1w36_B RECB, exodeoxyribonucle 89.3 0.59 2E-05 48.9 6.9 54 71-124 17-79 (1180)
174 4b4t_L 26S protease subunit RP 89.0 0.29 1E-05 44.7 3.9 56 30-88 175-233 (437)
175 4b4t_H 26S protease regulatory 89.0 0.17 5.9E-06 46.3 2.3 55 30-87 203-260 (467)
176 3cf2_A TER ATPase, transitiona 88.7 0.56 1.9E-05 46.4 5.8 17 71-87 239-255 (806)
177 1qvr_A CLPB protein; coiled co 88.3 0.47 1.6E-05 47.8 5.2 19 71-89 192-210 (854)
178 2ius_A DNA translocase FTSK; n 88.2 0.58 2E-05 43.7 5.3 30 67-96 164-193 (512)
179 2v1x_A ATP-dependent DNA helic 88.2 0.86 2.9E-05 43.7 6.7 59 272-330 84-144 (591)
180 2qgz_A Helicase loader, putati 88.2 0.96 3.3E-05 39.3 6.5 20 70-89 152-171 (308)
181 4b4t_K 26S protease regulatory 88.2 0.19 6.3E-06 45.9 2.0 56 30-88 166-224 (428)
182 3cf0_A Transitional endoplasmi 87.7 0.19 6.6E-06 43.6 1.8 55 31-88 10-67 (301)
183 1vec_A ATP-dependent RNA helic 87.5 2.8 9.5E-05 33.5 8.7 73 273-349 72-155 (206)
184 2hjv_A ATP-dependent RNA helic 87.5 2.3 7.9E-05 32.7 7.8 74 101-184 35-112 (163)
185 3cmu_A Protein RECA, recombina 87.0 0.41 1.4E-05 52.0 4.0 40 70-112 1427-1466(2050)
186 3hws_A ATP-dependent CLP prote 86.5 0.99 3.4E-05 40.2 5.8 19 70-88 51-69 (363)
187 3nbx_X ATPase RAVA; AAA+ ATPas 86.3 0.91 3.1E-05 42.3 5.5 31 58-88 29-59 (500)
188 2l8b_A Protein TRAI, DNA helic 86.2 0.4 1.4E-05 37.6 2.5 121 57-215 36-158 (189)
189 4b4t_I 26S protease regulatory 86.1 0.25 8.6E-06 44.7 1.6 56 29-87 175-233 (437)
190 1fuk_A Eukaryotic initiation f 86.1 3.6 0.00012 31.6 8.2 73 101-183 30-106 (165)
191 1ofh_A ATP-dependent HSL prote 86.0 1.5 5.3E-05 37.7 6.7 19 70-88 50-68 (310)
192 1jbk_A CLPB protein; beta barr 86.0 0.65 2.2E-05 36.6 3.9 18 71-88 44-61 (195)
193 3hjh_A Transcription-repair-co 85.9 1.2 4E-05 41.4 6.0 76 260-348 371-446 (483)
194 2oxc_A Probable ATP-dependent 85.6 1.7 5.8E-05 35.7 6.4 72 272-348 92-174 (230)
195 2eyu_A Twitching motility prot 85.6 0.39 1.4E-05 40.6 2.5 22 67-88 22-43 (261)
196 3lda_A DNA repair protein RAD5 85.4 2.3 8E-05 38.3 7.6 28 27-54 78-105 (400)
197 2pt7_A CAG-ALFA; ATPase, prote 85.3 0.67 2.3E-05 40.7 4.0 19 67-85 168-186 (330)
198 2gxq_A Heat resistant RNA depe 85.3 9 0.00031 30.4 10.6 74 272-349 72-153 (207)
199 2x8a_A Nuclear valosin-contain 85.3 0.2 6.9E-06 42.8 0.5 54 31-87 5-61 (274)
200 1ls1_A Signal recognition part 85.3 6 0.0002 33.9 9.9 19 71-89 99-117 (295)
201 1xwi_A SKD1 protein; VPS4B, AA 85.3 1.3 4.4E-05 38.7 5.8 55 31-88 7-63 (322)
202 2rb4_A ATP-dependent RNA helic 85.1 4.4 0.00015 31.5 8.3 72 100-181 33-108 (175)
203 3jvv_A Twitching mobility prot 85.0 0.57 2E-05 41.6 3.4 26 69-95 122-147 (356)
204 2i1q_A DNA repair and recombin 85.0 0.98 3.3E-05 39.5 4.9 54 71-124 99-166 (322)
205 2r2a_A Uncharacterized protein 84.9 0.7 2.4E-05 37.2 3.5 23 72-94 7-29 (199)
206 2w0m_A SSO2452; RECA, SSPF, un 84.8 0.89 3E-05 37.3 4.3 39 68-109 21-59 (235)
207 2iut_A DNA translocase FTSK; n 84.7 1.1 3.9E-05 42.2 5.3 42 69-110 213-255 (574)
208 1kgd_A CASK, peripheral plasma 84.6 0.6 2E-05 36.8 3.0 20 69-88 4-23 (180)
209 3vaa_A Shikimate kinase, SK; s 84.4 0.6 2.1E-05 37.5 3.0 22 68-89 23-44 (199)
210 2gza_A Type IV secretion syste 84.4 0.6 2E-05 41.6 3.2 22 66-87 171-192 (361)
211 1e9r_A Conjugal transfer prote 84.3 0.72 2.5E-05 42.3 3.9 44 69-115 52-95 (437)
212 3eaq_A Heat resistant RNA depe 84.3 3.4 0.00012 33.4 7.6 71 101-181 31-105 (212)
213 2cvh_A DNA repair and recombin 84.2 0.57 2E-05 38.1 2.9 35 69-109 19-53 (220)
214 3fe2_A Probable ATP-dependent 84.2 3.7 0.00013 33.9 7.9 73 272-348 102-184 (242)
215 2r44_A Uncharacterized protein 84.1 0.43 1.5E-05 41.9 2.2 25 64-88 40-64 (331)
216 2zts_A Putative uncharacterize 84.0 0.63 2.1E-05 38.8 3.1 52 70-124 30-81 (251)
217 2qor_A Guanylate kinase; phosp 84.0 0.62 2.1E-05 37.6 2.9 23 66-88 8-30 (204)
218 3eie_A Vacuolar protein sortin 83.8 0.31 1.1E-05 42.7 1.1 55 31-88 13-69 (322)
219 2z43_A DNA repair and recombin 83.8 1.4 4.9E-05 38.5 5.4 55 70-124 107-165 (324)
220 1ixz_A ATP-dependent metallopr 83.7 1 3.4E-05 37.8 4.2 57 29-88 9-67 (254)
221 1c9k_A COBU, adenosylcobinamid 83.7 0.63 2.2E-05 36.7 2.7 45 73-124 2-46 (180)
222 2p6n_A ATP-dependent RNA helic 83.7 7.5 0.00025 30.8 9.2 72 102-183 55-130 (191)
223 3trf_A Shikimate kinase, SK; a 83.7 0.53 1.8E-05 37.2 2.3 20 70-89 5-24 (185)
224 2qmh_A HPR kinase/phosphorylas 83.6 0.57 2E-05 37.5 2.4 19 70-88 34-52 (205)
225 3iij_A Coilin-interacting nucl 83.4 0.52 1.8E-05 37.1 2.2 22 68-89 9-30 (180)
226 2bjv_A PSP operon transcriptio 83.4 0.94 3.2E-05 38.2 3.9 20 69-88 28-47 (265)
227 1lvg_A Guanylate kinase, GMP k 83.3 0.71 2.4E-05 37.1 3.0 20 69-88 3-22 (198)
228 3vkg_A Dynein heavy chain, cyt 83.3 3.2 0.00011 47.5 8.9 68 41-110 874-946 (3245)
229 1qhx_A CPT, protein (chloramph 83.3 0.54 1.9E-05 36.8 2.2 19 70-88 3-21 (178)
230 3lw7_A Adenylate kinase relate 83.1 0.53 1.8E-05 36.6 2.1 18 72-89 3-20 (179)
231 3tau_A Guanylate kinase, GMP k 83.0 0.74 2.5E-05 37.3 3.0 20 69-88 7-26 (208)
232 4akg_A Glutathione S-transfera 83.0 2.3 7.8E-05 48.0 7.5 48 41-89 891-942 (2695)
233 1n0w_A DNA repair protein RAD5 82.8 1.9 6.5E-05 35.6 5.6 24 69-92 23-46 (243)
234 3bh0_A DNAB-like replicative h 82.8 1.2 3.9E-05 38.9 4.3 51 69-123 67-117 (315)
235 1zp6_A Hypothetical protein AT 82.8 0.39 1.3E-05 38.2 1.2 21 68-88 7-27 (191)
236 3bor_A Human initiation factor 82.4 2.8 9.5E-05 34.6 6.4 74 272-348 98-181 (237)
237 1xti_A Probable ATP-dependent 82.4 5.1 0.00017 35.7 8.7 73 273-348 77-160 (391)
238 2j41_A Guanylate kinase; GMP, 82.4 0.76 2.6E-05 37.0 2.8 21 68-88 4-24 (207)
239 1y63_A LMAJ004144AAA protein; 82.3 0.66 2.2E-05 36.7 2.4 20 69-88 9-28 (184)
240 3a8t_A Adenylate isopentenyltr 82.2 0.73 2.5E-05 40.3 2.8 19 71-89 41-59 (339)
241 4ag6_A VIRB4 ATPase, type IV s 82.2 1.6 5.3E-05 39.4 5.1 41 69-112 34-74 (392)
242 1kag_A SKI, shikimate kinase I 82.0 0.72 2.5E-05 35.9 2.5 19 70-88 4-22 (173)
243 1tue_A Replication protein E1; 81.9 0.78 2.7E-05 37.0 2.6 43 43-87 29-75 (212)
244 2qz4_A Paraplegin; AAA+, SPG7, 81.8 0.65 2.2E-05 39.0 2.3 19 70-88 39-57 (262)
245 1qde_A EIF4A, translation init 81.8 2.1 7.2E-05 34.8 5.4 73 271-348 81-163 (224)
246 3exa_A TRNA delta(2)-isopenten 81.7 0.78 2.7E-05 39.7 2.7 19 71-89 4-22 (322)
247 3b9p_A CG5977-PA, isoform A; A 81.6 0.64 2.2E-05 40.0 2.2 55 31-88 16-72 (297)
248 1v5w_A DMC1, meiotic recombina 81.4 1.3 4.6E-05 39.0 4.2 53 72-124 124-180 (343)
249 3foz_A TRNA delta(2)-isopenten 81.3 0.82 2.8E-05 39.5 2.7 18 72-89 12-29 (316)
250 3nwn_A Kinesin-like protein KI 81.3 1 3.4E-05 40.0 3.3 25 64-88 97-123 (359)
251 1um8_A ATP-dependent CLP prote 81.2 2.7 9.3E-05 37.5 6.3 19 70-88 72-90 (376)
252 3tr0_A Guanylate kinase, GMP k 81.2 0.88 3E-05 36.5 2.8 20 69-88 6-25 (205)
253 1kht_A Adenylate kinase; phosp 81.1 0.74 2.5E-05 36.5 2.3 19 70-88 3-21 (192)
254 1ly1_A Polynucleotide kinase; 81.0 0.71 2.4E-05 36.2 2.1 17 72-88 4-20 (181)
255 1u0j_A DNA replication protein 81.0 1.5 5E-05 37.0 4.1 44 42-88 73-122 (267)
256 1lv7_A FTSH; alpha/beta domain 80.9 0.69 2.4E-05 38.9 2.1 55 31-88 7-63 (257)
257 3kb2_A SPBC2 prophage-derived 80.7 0.73 2.5E-05 35.8 2.1 18 72-89 3-20 (173)
258 2ewv_A Twitching motility prot 80.7 0.73 2.5E-05 41.3 2.3 21 68-88 134-154 (372)
259 2ze6_A Isopentenyl transferase 80.6 0.9 3.1E-05 38.1 2.7 16 73-88 4-19 (253)
260 4gp7_A Metallophosphoesterase; 80.6 0.56 1.9E-05 36.6 1.4 20 69-88 8-27 (171)
261 1t5i_A C_terminal domain of A 80.3 6.1 0.00021 30.6 7.4 74 101-184 31-108 (172)
262 4f4c_A Multidrug resistance pr 80.3 0.87 3E-05 48.1 3.1 21 68-88 1103-1123(1321)
263 3i5x_A ATP-dependent RNA helic 80.3 11 0.00039 35.5 10.7 89 88-183 326-418 (563)
264 1bg2_A Kinesin; motor protein, 80.3 1.3 4.3E-05 38.7 3.6 25 64-88 70-96 (325)
265 3ney_A 55 kDa erythrocyte memb 80.2 1.1 3.8E-05 35.9 3.0 20 69-88 18-37 (197)
266 3iuy_A Probable ATP-dependent 80.2 4.6 0.00016 32.9 7.0 73 272-348 94-175 (228)
267 1z6g_A Guanylate kinase; struc 80.0 1.2 4.1E-05 36.3 3.3 22 67-88 20-41 (218)
268 3t15_A Ribulose bisphosphate c 79.9 0.68 2.3E-05 39.9 1.8 18 71-88 37-54 (293)
269 3bgw_A DNAB-like replicative h 79.5 1.4 4.9E-05 40.4 3.9 50 69-122 196-245 (444)
270 3b5x_A Lipid A export ATP-bind 79.3 3.1 0.0001 39.8 6.3 39 174-212 497-535 (582)
271 2px0_A Flagellar biosynthesis 79.3 1.2 4E-05 38.5 3.1 22 70-91 105-126 (296)
272 4eun_A Thermoresistant glucoki 79.2 0.96 3.3E-05 36.3 2.4 20 69-88 28-47 (200)
273 2i4i_A ATP-dependent RNA helic 79.2 10 0.00035 34.1 9.6 73 99-181 274-350 (417)
274 1wp9_A ATP-dependent RNA helic 79.2 21 0.00072 32.5 12.0 117 271-392 51-181 (494)
275 4f4c_A Multidrug resistance pr 79.1 0.28 9.7E-06 51.8 -1.1 34 174-207 571-604 (1321)
276 1goj_A Kinesin, kinesin heavy 78.9 1.4 4.9E-05 38.9 3.5 24 65-88 74-99 (355)
277 2h58_A Kinesin-like protein KI 78.8 1.5 5.2E-05 38.3 3.6 26 63-88 72-99 (330)
278 3dc4_A Kinesin-like protein NO 78.8 1.4 4.8E-05 38.8 3.4 23 65-87 88-112 (344)
279 3a00_A Guanylate kinase, GMP k 78.7 1.4 4.7E-05 34.9 3.1 18 71-88 2-19 (186)
280 2vvg_A Kinesin-2; motor protei 78.6 1.5 5.2E-05 38.6 3.6 24 65-88 83-108 (350)
281 1knq_A Gluconate kinase; ALFA/ 78.6 0.85 2.9E-05 35.6 1.8 19 70-88 8-26 (175)
282 2zfi_A Kinesin-like protein KI 78.5 1.5 5.3E-05 38.9 3.6 25 64-88 82-108 (366)
283 2jgn_A DBX, DDX3, ATP-dependen 78.4 8.1 0.00028 30.3 7.6 72 100-181 45-120 (185)
284 3cm0_A Adenylate kinase; ATP-b 78.3 0.72 2.5E-05 36.4 1.4 20 70-89 4-23 (186)
285 3lre_A Kinesin-like protein KI 78.3 1.5 5.1E-05 38.8 3.5 24 65-88 99-124 (355)
286 2y65_A Kinesin, kinesin heavy 78.2 1.6 5.4E-05 38.8 3.6 25 64-88 77-103 (365)
287 1nlf_A Regulatory protein REPA 78.2 2.6 8.9E-05 35.8 5.0 26 66-91 26-51 (279)
288 2qp9_X Vacuolar protein sortin 78.0 1.1 3.7E-05 39.9 2.5 18 71-88 85-102 (355)
289 1f9v_A Kinesin-like protein KA 78.0 1.6 5.4E-05 38.5 3.6 26 63-88 76-103 (347)
290 1s96_A Guanylate kinase, GMP k 78.0 1.4 4.7E-05 36.1 3.0 22 67-88 13-34 (219)
291 1t5c_A CENP-E protein, centrom 78.0 1.5 5.1E-05 38.7 3.3 25 64-88 70-96 (349)
292 3b6u_A Kinesin-like protein KI 77.9 1.5 5E-05 39.0 3.3 25 64-88 94-120 (372)
293 3uk6_A RUVB-like 2; hexameric 77.9 1.1 3.8E-05 39.9 2.6 24 71-95 71-94 (368)
294 1zuh_A Shikimate kinase; alpha 77.9 1 3.6E-05 34.8 2.2 19 71-89 8-26 (168)
295 1ojl_A Transcriptional regulat 77.9 1.7 5.6E-05 37.7 3.6 19 70-88 25-43 (304)
296 4a14_A Kinesin, kinesin-like p 77.8 1.7 5.9E-05 38.3 3.7 24 64-87 76-101 (344)
297 1iy2_A ATP-dependent metallopr 77.8 0.82 2.8E-05 39.0 1.7 55 31-88 35-91 (278)
298 1nij_A Hypothetical protein YJ 77.7 1.5 5E-05 38.3 3.3 15 73-87 7-21 (318)
299 3gbj_A KIF13B protein; kinesin 77.7 1.5 5.1E-05 38.8 3.3 25 64-88 85-111 (354)
300 3t0q_A AGR253WP; kinesin, alph 77.7 1.7 5.7E-05 38.4 3.6 26 63-88 77-104 (349)
301 3lnc_A Guanylate kinase, GMP k 77.7 0.81 2.8E-05 37.7 1.5 23 66-88 23-45 (231)
302 1cr0_A DNA primase/helicase; R 77.7 1.8 6.2E-05 37.2 3.8 41 67-109 32-72 (296)
303 1znw_A Guanylate kinase, GMP k 77.6 1.4 5E-05 35.5 3.0 22 66-87 16-37 (207)
304 4etp_A Kinesin-like protein KA 77.6 1.7 5.7E-05 39.2 3.7 26 63-88 132-159 (403)
305 1ex7_A Guanylate kinase; subst 77.6 1.3 4.3E-05 35.2 2.5 16 71-86 2-17 (186)
306 2nr8_A Kinesin-like protein KI 77.5 1.5 5.3E-05 38.7 3.3 25 64-88 96-122 (358)
307 3sqw_A ATP-dependent RNA helic 77.5 15 0.00052 34.9 10.6 87 91-184 278-368 (579)
308 1wrb_A DJVLGB; RNA helicase, D 77.5 20 0.00069 29.5 10.3 72 273-348 101-182 (253)
309 3crm_A TRNA delta(2)-isopenten 77.5 1.3 4.3E-05 38.6 2.7 18 72-89 7-24 (323)
310 3fmo_B ATP-dependent RNA helic 77.3 2.8 9.5E-05 36.1 4.9 70 273-349 163-244 (300)
311 4a1f_A DNAB helicase, replicat 77.2 2 6.7E-05 37.8 3.9 49 69-121 45-93 (338)
312 1v8k_A Kinesin-like protein KI 77.2 1.6 5.4E-05 39.4 3.3 25 64-88 147-173 (410)
313 2zr9_A Protein RECA, recombina 77.1 1.9 6.5E-05 38.1 3.9 39 69-110 60-98 (349)
314 1u94_A RECA protein, recombina 77.1 2.1 7.2E-05 37.9 4.1 38 70-110 63-100 (356)
315 1x88_A Kinesin-like protein KI 77.0 1.5 5.1E-05 38.9 3.1 25 64-88 81-107 (359)
316 2c9o_A RUVB-like 1; hexameric 77.0 1.1 3.7E-05 41.5 2.3 19 70-88 63-81 (456)
317 2wbe_C Bipolar kinesin KRP-130 76.9 1.6 5.5E-05 38.9 3.3 23 66-88 95-119 (373)
318 3d3q_A TRNA delta(2)-isopenten 76.7 1.6 5.3E-05 38.4 3.1 17 72-88 9-25 (340)
319 3t61_A Gluconokinase; PSI-biol 76.5 1.2 4E-05 35.8 2.1 18 71-88 19-36 (202)
320 1tev_A UMP-CMP kinase; ploop, 76.3 1 3.6E-05 35.7 1.8 18 71-88 4-21 (196)
321 3tqc_A Pantothenate kinase; bi 76.3 4.3 0.00015 35.3 5.8 15 73-87 95-109 (321)
322 2r62_A Cell division protease 76.3 0.69 2.4E-05 39.1 0.7 19 70-88 44-62 (268)
323 2c95_A Adenylate kinase 1; tra 76.1 1.2 4.2E-05 35.3 2.2 21 69-89 8-28 (196)
324 2owm_A Nckin3-434, related to 76.1 1.9 6.6E-05 39.3 3.6 23 66-88 131-155 (443)
325 2bdt_A BH3686; alpha-beta prot 76.0 1.2 4.2E-05 35.2 2.2 18 72-89 4-21 (189)
326 3bfn_A Kinesin-like protein KI 76.0 1.7 5.8E-05 38.9 3.2 33 56-88 75-117 (388)
327 2pl3_A Probable ATP-dependent 76.0 4 0.00014 33.4 5.4 72 272-348 97-179 (236)
328 1gvn_B Zeta; postsegregational 75.8 1.2 4.1E-05 38.2 2.1 18 71-88 34-51 (287)
329 1via_A Shikimate kinase; struc 75.7 1.4 4.8E-05 34.4 2.4 18 72-89 6-23 (175)
330 1f2t_A RAD50 ABC-ATPase; DNA d 75.7 1.3 4.5E-05 33.6 2.1 16 72-87 25-40 (149)
331 2r8r_A Sensor protein; KDPD, P 75.7 3 0.0001 34.1 4.3 25 72-96 8-32 (228)
332 3u06_A Protein claret segregat 75.6 1.9 6.6E-05 38.9 3.5 26 63-88 130-157 (412)
333 3fb4_A Adenylate kinase; psych 75.6 1.3 4.3E-05 36.0 2.2 18 72-89 2-19 (216)
334 2heh_A KIF2C protein; kinesin, 75.6 2 6.7E-05 38.4 3.5 26 64-89 127-154 (387)
335 3ice_A Transcription terminati 75.5 2 6.8E-05 38.4 3.4 28 61-88 162-192 (422)
336 2rhm_A Putative kinase; P-loop 75.5 1.2 4E-05 35.4 1.9 20 70-89 5-24 (193)
337 3hr8_A Protein RECA; alpha and 75.4 1.8 6E-05 38.4 3.1 41 70-113 61-101 (356)
338 2v54_A DTMP kinase, thymidylat 75.4 1.4 4.9E-05 35.2 2.4 21 69-89 3-23 (204)
339 1xjc_A MOBB protein homolog; s 75.3 2.8 9.6E-05 32.6 3.9 23 72-95 6-28 (169)
340 3cob_A Kinesin heavy chain-lik 75.2 1.6 5.3E-05 38.9 2.7 26 63-88 71-98 (369)
341 2iyv_A Shikimate kinase, SK; t 75.2 1.6 5.4E-05 34.3 2.6 19 71-89 3-21 (184)
342 4fcw_A Chaperone protein CLPB; 75.2 1.2 4.1E-05 38.6 2.0 18 71-88 48-65 (311)
343 1aky_A Adenylate kinase; ATP:A 75.1 1.5 5E-05 35.8 2.4 20 70-89 4-23 (220)
344 3d8b_A Fidgetin-like protein 1 75.0 1.3 4.6E-05 39.3 2.3 19 70-88 117-135 (357)
345 1np6_A Molybdopterin-guanine d 74.7 3.9 0.00013 31.9 4.6 23 72-95 8-30 (174)
346 3dl0_A Adenylate kinase; phosp 74.7 1.4 4.7E-05 35.8 2.2 18 72-89 2-19 (216)
347 2rep_A Kinesin-like protein KI 74.6 2.1 7.2E-05 38.1 3.4 25 64-88 108-134 (376)
348 1e6c_A Shikimate kinase; phosp 74.4 1.6 5.5E-05 33.8 2.4 19 71-89 3-21 (173)
349 1ye8_A Protein THEP1, hypothet 74.4 1.9 6.4E-05 33.9 2.8 16 72-87 2-17 (178)
350 3nwj_A ATSK2; P loop, shikimat 74.4 2.4 8.1E-05 35.5 3.5 20 69-88 47-66 (250)
351 1m7g_A Adenylylsulfate kinase; 74.2 1.8 6E-05 35.1 2.7 31 57-88 13-43 (211)
352 2bwj_A Adenylate kinase 5; pho 74.1 1.7 5.7E-05 34.6 2.5 20 69-88 11-30 (199)
353 2j37_W Signal recognition part 74.0 12 0.0004 34.9 8.4 35 72-109 103-137 (504)
354 2qt1_A Nicotinamide riboside k 74.0 0.93 3.2E-05 36.6 0.9 24 65-88 16-39 (207)
355 1in4_A RUVB, holliday junction 74.0 1.9 6.6E-05 37.8 3.0 18 71-88 52-69 (334)
356 1hqc_A RUVB; extended AAA-ATPa 73.9 1.3 4.6E-05 38.5 2.0 18 71-88 39-56 (324)
357 1nks_A Adenylate kinase; therm 73.7 1.3 4.6E-05 34.9 1.8 18 72-89 3-20 (194)
358 3ly5_A ATP-dependent RNA helic 73.7 15 0.0005 30.7 8.4 73 272-348 126-209 (262)
359 2cdn_A Adenylate kinase; phosp 73.6 1.7 5.8E-05 34.8 2.4 19 71-89 21-39 (201)
360 3eph_A TRNA isopentenyltransfe 73.6 1.6 5.5E-05 39.2 2.4 17 73-89 5-21 (409)
361 3cf2_A TER ATPase, transitiona 73.6 1.4 4.9E-05 43.5 2.3 54 31-87 472-528 (806)
362 3vfd_A Spastin; ATPase, microt 73.5 1.5 5.2E-05 39.4 2.3 19 70-88 148-166 (389)
363 3sr0_A Adenylate kinase; phosp 73.4 2 6.8E-05 34.7 2.8 18 72-89 2-19 (206)
364 3c8u_A Fructokinase; YP_612366 73.4 1.4 4.8E-05 35.6 1.9 18 70-87 22-39 (208)
365 3uie_A Adenylyl-sulfate kinase 73.3 1.8 6.2E-05 34.6 2.5 21 68-88 23-43 (200)
366 1g8p_A Magnesium-chelatase 38 73.2 1.2 4E-05 39.4 1.4 19 70-88 45-63 (350)
367 1zd8_A GTP:AMP phosphotransfer 73.0 1.5 5.2E-05 35.9 2.0 19 70-88 7-25 (227)
368 2v9p_A Replication protein E1; 72.9 2 6.7E-05 37.1 2.8 21 68-88 124-144 (305)
369 2zan_A Vacuolar protein sortin 72.8 1.5 5.2E-05 40.3 2.1 56 30-88 128-185 (444)
370 1zak_A Adenylate kinase; ATP:A 72.7 1.6 5.6E-05 35.6 2.2 20 70-89 5-24 (222)
371 1xp8_A RECA protein, recombina 72.7 2.9 9.8E-05 37.2 3.9 39 70-111 74-112 (366)
372 3tif_A Uncharacterized ABC tra 72.7 1.6 5.3E-05 36.2 2.0 18 68-85 29-46 (235)
373 2plr_A DTMP kinase, probable t 72.6 1.4 4.8E-05 35.5 1.7 20 70-89 4-23 (213)
374 1qf9_A UMP/CMP kinase, protein 72.6 1.5 5.2E-05 34.6 1.9 18 72-89 8-25 (194)
375 2pez_A Bifunctional 3'-phospho 72.3 1.6 5.4E-05 34.2 1.9 19 70-88 5-23 (179)
376 3cmw_A Protein RECA, recombina 72.3 2.5 8.7E-05 45.4 3.9 89 71-189 1432-1523(1706)
377 1jjv_A Dephospho-COA kinase; P 72.3 1.7 5.8E-05 34.9 2.1 16 73-88 5-20 (206)
378 2vli_A Antibiotic resistance p 72.0 1.5 5.3E-05 34.3 1.8 20 70-89 5-24 (183)
379 3tlx_A Adenylate kinase 2; str 72.0 2.5 8.6E-05 35.1 3.2 20 70-89 29-48 (243)
380 1ukz_A Uridylate kinase; trans 72.0 1.8 6.1E-05 34.7 2.2 17 72-88 17-33 (203)
381 3i32_A Heat resistant RNA depe 71.9 12 0.0004 32.2 7.4 73 101-183 28-104 (300)
382 3umf_A Adenylate kinase; rossm 71.9 2.3 7.8E-05 34.7 2.8 21 69-89 28-48 (217)
383 2pt5_A Shikimate kinase, SK; a 71.8 1.8 6.2E-05 33.3 2.1 17 72-88 2-18 (168)
384 1pzn_A RAD51, DNA repair and r 71.5 2.4 8.3E-05 37.5 3.1 19 72-90 133-151 (349)
385 3f9v_A Minichromosome maintena 71.4 2.1 7.3E-05 40.9 2.9 14 72-85 329-342 (595)
386 3pxg_A Negative regulator of g 71.4 2.5 8.4E-05 39.2 3.2 25 70-95 201-225 (468)
387 4a74_A DNA repair and recombin 71.4 1.6 5.4E-05 35.7 1.7 22 68-89 23-44 (231)
388 1sxj_A Activator 1 95 kDa subu 71.2 3.7 0.00013 38.5 4.5 41 174-216 147-189 (516)
389 2wwf_A Thymidilate kinase, put 71.1 1.8 6.3E-05 34.8 2.1 21 69-89 9-29 (212)
390 2pbr_A DTMP kinase, thymidylat 71.0 1.9 6.5E-05 34.1 2.1 17 73-89 3-19 (195)
391 2i3b_A HCR-ntpase, human cance 71.0 2.9 9.9E-05 33.2 3.1 41 173-216 103-145 (189)
392 2yvu_A Probable adenylyl-sulfa 70.9 1.8 6E-05 34.2 1.9 21 69-89 12-32 (186)
393 2jaq_A Deoxyguanosine kinase; 70.8 1.9 6.6E-05 34.4 2.1 17 72-88 2-18 (205)
394 3a4m_A L-seryl-tRNA(SEC) kinas 70.7 1.9 6.5E-05 36.3 2.1 19 71-89 5-23 (260)
395 3asz_A Uridine kinase; cytidin 70.5 1.6 5.6E-05 35.2 1.6 19 70-88 6-24 (211)
396 2z0h_A DTMP kinase, thymidylat 70.5 2 6.9E-05 34.1 2.2 17 73-89 3-19 (197)
397 1cke_A CK, MSSA, protein (cyti 70.4 2.5 8.4E-05 34.5 2.7 19 71-89 6-24 (227)
398 2cbz_A Multidrug resistance-as 70.4 1.9 6.5E-05 35.7 2.0 18 68-85 29-46 (237)
399 3be4_A Adenylate kinase; malar 70.4 1.9 6.7E-05 35.0 2.1 20 70-89 5-24 (217)
400 3qf7_A RAD50; ABC-ATPase, ATPa 70.4 3 0.0001 37.1 3.5 17 72-88 25-41 (365)
401 1sgw_A Putative ABC transporte 70.4 2 7E-05 34.9 2.2 19 68-86 33-51 (214)
402 1g41_A Heat shock protein HSLU 70.3 2.1 7.1E-05 39.1 2.4 19 70-88 50-68 (444)
403 3kta_A Chromosome segregation 70.2 1.8 6.3E-05 33.8 1.9 17 72-88 28-44 (182)
404 1nn5_A Similar to deoxythymidy 70.2 2 6.9E-05 34.6 2.1 21 69-89 8-28 (215)
405 1ak2_A Adenylate kinase isoenz 70.1 2.8 9.5E-05 34.5 3.0 20 70-89 16-35 (233)
406 1s2m_A Putative ATP-dependent 69.9 32 0.0011 30.5 10.3 74 272-349 89-172 (400)
407 2if2_A Dephospho-COA kinase; a 69.6 1.9 6.5E-05 34.5 1.9 17 72-88 3-19 (204)
408 3pey_A ATP-dependent RNA helic 69.5 22 0.00074 31.4 9.1 76 100-185 242-321 (395)
409 2xb4_A Adenylate kinase; ATP-b 69.0 2.2 7.5E-05 34.9 2.1 18 72-89 2-19 (223)
410 1vma_A Cell division protein F 68.9 4.9 0.00017 34.7 4.4 18 72-89 106-123 (306)
411 2bbw_A Adenylate kinase 4, AK4 68.8 2.2 7.6E-05 35.4 2.1 19 70-88 27-45 (246)
412 1e4v_A Adenylate kinase; trans 68.4 2.6 9E-05 34.1 2.5 18 72-89 2-19 (214)
413 2ce7_A Cell division protein F 68.4 2.2 7.4E-05 39.5 2.1 53 31-88 11-67 (476)
414 3k1j_A LON protease, ATP-depen 68.2 3.6 0.00012 39.5 3.7 24 65-88 55-78 (604)
415 1htw_A HI0065; nucleotide-bind 68.1 2.1 7E-05 32.9 1.6 18 68-85 31-48 (158)
416 1ry6_A Internal kinesin; kines 68.0 3.5 0.00012 36.5 3.3 19 70-88 83-103 (360)
417 2ff7_A Alpha-hemolysin translo 67.9 2.2 7.6E-05 35.5 2.0 19 68-86 33-51 (247)
418 3foj_A Uncharacterized protein 67.9 4.3 0.00015 28.1 3.2 34 272-305 56-89 (100)
419 2pze_A Cystic fibrosis transme 67.9 2.2 7.7E-05 35.1 1.9 19 68-86 32-50 (229)
420 1q0u_A Bstdead; DEAD protein, 67.9 3.3 0.00011 33.5 3.0 73 272-348 72-158 (219)
421 3gfo_A Cobalt import ATP-bindi 67.8 2.2 7.4E-05 36.3 1.9 18 68-85 32-49 (275)
422 3gk5_A Uncharacterized rhodane 67.5 4 0.00014 28.8 3.0 35 272-306 55-89 (108)
423 3auy_A DNA double-strand break 67.5 2.1 7.3E-05 38.2 1.9 16 72-87 27-42 (371)
424 2ghi_A Transport protein; mult 67.5 2.3 8E-05 35.7 2.0 19 68-86 44-62 (260)
425 2grj_A Dephospho-COA kinase; T 67.4 2.6 8.9E-05 33.6 2.2 38 73-119 15-52 (192)
426 2lci_A Protein OR36; structura 67.1 25 0.00087 23.5 10.3 79 251-329 30-108 (134)
427 4g1u_C Hemin import ATP-bindin 66.9 2.4 8E-05 35.9 1.9 18 68-85 35-52 (266)
428 2p5t_B PEZT; postsegregational 66.7 1.8 6.3E-05 36.2 1.2 18 71-88 33-50 (253)
429 1rj9_A FTSY, signal recognitio 66.6 6.6 0.00022 33.9 4.7 19 70-88 102-120 (304)
430 3aez_A Pantothenate kinase; tr 66.6 5.1 0.00017 34.7 4.0 18 70-87 90-107 (312)
431 1g6h_A High-affinity branched- 66.6 2.5 8.4E-05 35.5 2.0 18 68-85 31-48 (257)
432 2vhj_A Ntpase P4, P4; non- hyd 66.4 2.6 8.9E-05 36.6 2.1 23 69-91 122-144 (331)
433 2pcj_A ABC transporter, lipopr 66.4 2.2 7.6E-05 34.9 1.6 17 69-85 29-45 (224)
434 1ji0_A ABC transporter; ATP bi 66.4 2.5 8.6E-05 35.0 2.0 19 68-86 30-48 (240)
435 3qks_A DNA double-strand break 66.0 2.8 9.6E-05 33.7 2.1 17 72-88 25-41 (203)
436 2q5c_A NTRC family transcripti 65.9 48 0.0016 26.2 10.2 114 273-397 5-122 (196)
437 3m6a_A ATP-dependent protease 65.8 2.8 9.4E-05 39.7 2.3 20 69-88 107-126 (543)
438 3eme_A Rhodanese-like domain p 65.8 4.5 0.00015 28.2 2.9 34 272-305 56-89 (103)
439 1b0u_A Histidine permease; ABC 65.7 2.6 9E-05 35.5 2.0 18 68-85 30-47 (262)
440 1mv5_A LMRA, multidrug resista 65.7 2.2 7.5E-05 35.5 1.5 19 68-86 26-44 (243)
441 4e22_A Cytidylate kinase; P-lo 65.6 3.8 0.00013 34.2 3.0 20 69-88 26-45 (252)
442 2qi9_C Vitamin B12 import ATP- 65.6 2.6 9E-05 35.2 1.9 18 68-85 24-41 (249)
443 2db3_A ATP-dependent RNA helic 65.3 30 0.001 31.3 9.3 68 104-181 303-374 (434)
444 1vpl_A ABC transporter, ATP-bi 65.2 2.8 9.4E-05 35.2 2.0 17 69-85 40-56 (256)
445 3b9q_A Chloroplast SRP recepto 65.1 5.9 0.0002 34.1 4.1 19 71-89 101-119 (302)
446 2olj_A Amino acid ABC transpor 64.9 2.8 9.6E-05 35.3 2.0 18 69-86 49-66 (263)
447 1vht_A Dephospho-COA kinase; s 64.8 3 0.0001 33.8 2.1 18 71-88 5-22 (218)
448 2ixe_A Antigen peptide transpo 64.7 2.9 9.8E-05 35.5 2.0 18 68-85 43-60 (271)
449 2yz2_A Putative ABC transporte 64.6 2.9 9.8E-05 35.3 2.0 18 68-85 31-48 (266)
450 1zu4_A FTSY; GTPase, signal re 64.6 6.8 0.00023 34.1 4.4 18 72-89 107-124 (320)
451 2nq2_C Hypothetical ABC transp 64.5 2.8 9.5E-05 35.1 1.9 18 68-85 29-46 (253)
452 4a2p_A RIG-I, retinoic acid in 64.5 8 0.00027 36.3 5.4 74 272-349 55-139 (556)
453 3tbk_A RIG-I helicase domain; 64.4 6.4 0.00022 37.0 4.7 73 272-348 52-135 (555)
454 1hv8_A Putative ATP-dependent 64.3 39 0.0013 29.3 9.6 73 271-348 73-155 (367)
455 4a2q_A RIG-I, retinoic acid in 64.3 10 0.00035 37.7 6.2 73 272-348 296-379 (797)
456 3fht_A ATP-dependent RNA helic 64.2 18 0.00062 32.2 7.5 71 101-181 266-340 (412)
457 1uf9_A TT1252 protein; P-loop, 64.0 3.6 0.00012 32.7 2.4 17 72-88 10-26 (203)
458 2ihy_A ABC transporter, ATP-bi 63.7 3 0.0001 35.5 1.9 18 68-85 45-62 (279)
459 1fuu_A Yeast initiation factor 63.7 19 0.00065 31.8 7.5 73 271-348 88-170 (394)
460 1q57_A DNA primase/helicase; d 62.9 4.1 0.00014 38.1 2.9 50 69-121 241-290 (503)
461 3tqf_A HPR(Ser) kinase; transf 62.9 3.6 0.00012 32.1 2.1 22 70-91 16-37 (181)
462 2jeo_A Uridine-cytidine kinase 62.8 2.9 9.9E-05 34.7 1.7 20 69-88 24-43 (245)
463 2zu0_C Probable ATP-dependent 62.8 4 0.00014 34.4 2.6 19 68-86 44-62 (267)
464 3pxi_A Negative regulator of g 62.8 4.4 0.00015 40.1 3.2 19 70-88 201-219 (758)
465 2d2e_A SUFC protein; ABC-ATPas 62.7 4 0.00014 34.0 2.6 19 68-86 27-45 (250)
466 1ltq_A Polynucleotide kinase; 62.7 3.3 0.00011 35.5 2.1 17 72-88 4-20 (301)
467 3l0o_A Transcription terminati 62.6 5 0.00017 35.8 3.2 29 59-87 161-192 (427)
468 4akg_A Glutathione S-transfera 62.5 3.3 0.00011 46.8 2.4 21 67-87 1264-1284(2695)
469 1gku_B Reverse gyrase, TOP-RG; 62.3 11 0.00038 38.8 6.2 75 272-348 99-183 (1054)
470 2fsf_A Preprotein translocase 62.3 27 0.00091 34.7 8.4 57 269-331 112-172 (853)
471 3bs4_A Uncharacterized protein 62.3 4.9 0.00017 33.7 3.0 52 70-125 21-72 (260)
472 1tf5_A Preprotein translocase 62.2 25 0.00086 34.8 8.2 73 268-346 120-209 (844)
473 1uj2_A Uridine-cytidine kinase 62.1 3.6 0.00012 34.3 2.2 17 72-88 24-40 (252)
474 3iwh_A Rhodanese-like domain p 61.6 6 0.00021 27.6 2.9 34 272-305 56-89 (103)
475 1rz3_A Hypothetical protein rb 61.5 4.3 0.00015 32.4 2.5 18 71-88 23-40 (201)
476 2v6i_A RNA helicase; membrane, 61.5 15 0.00051 33.4 6.3 55 101-159 171-225 (431)
477 3qkt_A DNA double-strand break 61.5 3.6 0.00012 36.2 2.1 16 73-88 26-41 (339)
478 3nh6_A ATP-binding cassette SU 61.3 2.5 8.5E-05 36.6 1.0 19 68-86 78-96 (306)
479 2dhr_A FTSH; AAA+ protein, hex 61.2 3.5 0.00012 38.4 2.1 55 31-88 26-82 (499)
480 3zyw_A Glutaredoxin-3; metal b 60.3 35 0.0012 24.0 6.9 64 261-327 7-76 (111)
481 2d7d_A Uvrabc system protein B 60.3 25 0.00085 34.1 8.0 78 100-187 444-525 (661)
482 2f1r_A Molybdopterin-guanine d 60.2 2.3 7.7E-05 33.2 0.5 18 72-89 4-21 (171)
483 1svm_A Large T antigen; AAA+ f 60.0 5.1 0.00018 35.7 2.9 20 69-88 168-187 (377)
484 1wv9_A Rhodanese homolog TT165 59.9 5.7 0.0002 27.0 2.6 34 273-306 54-87 (94)
485 2f6r_A COA synthase, bifunctio 59.7 3.7 0.00013 35.0 1.8 18 72-89 77-94 (281)
486 2bbs_A Cystic fibrosis transme 59.7 3.6 0.00012 35.3 1.7 18 69-86 63-80 (290)
487 2og2_A Putative signal recogni 59.7 8.1 0.00028 34.2 4.1 18 72-89 159-176 (359)
488 1odf_A YGR205W, hypothetical 3 59.5 5.2 0.00018 34.2 2.7 17 72-88 33-49 (290)
489 3e70_C DPA, signal recognition 59.5 8.4 0.00029 33.6 4.1 51 176-226 212-263 (328)
490 3ake_A Cytidylate kinase; CMP 59.2 4.4 0.00015 32.3 2.2 18 72-89 4-21 (208)
491 2j0s_A ATP-dependent RNA helic 59.2 25 0.00085 31.4 7.5 72 101-182 276-351 (410)
492 3dkp_A Probable ATP-dependent 58.8 10 0.00035 31.2 4.4 73 273-348 99-183 (245)
493 3r20_A Cytidylate kinase; stru 58.8 4.5 0.00016 33.3 2.1 18 71-88 10-27 (233)
494 4tmk_A Protein (thymidylate ki 58.8 16 0.00054 29.5 5.4 26 69-95 2-27 (213)
495 2v3c_C SRP54, signal recogniti 58.7 7.3 0.00025 35.5 3.7 34 72-108 101-134 (432)
496 3p32_A Probable GTPase RV1496/ 58.6 75 0.0026 27.8 10.3 18 72-89 81-98 (355)
497 1ypw_A Transitional endoplasmi 58.4 3.5 0.00012 41.1 1.7 20 69-88 237-256 (806)
498 4eaq_A DTMP kinase, thymidylat 58.4 5.2 0.00018 32.8 2.5 21 69-89 25-45 (229)
499 1nkt_A Preprotein translocase 58.3 33 0.0011 34.3 8.3 74 267-346 147-237 (922)
500 1tf7_A KAIC; homohexamer, hexa 58.1 7.3 0.00025 36.6 3.7 51 67-121 278-328 (525)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.7e-62 Score=457.68 Aligned_cols=384 Identities=29% Similarity=0.485 Sum_probs=345.3
Q ss_pred cceeeccCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC-
Q 015454 20 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS- 98 (406)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~- 98 (406)
.+.......+.+..+|+++++++.+.+++...||..|+++|.++++.+++|+++++++|||||||++|++|++..+...
T Consensus 43 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 122 (434)
T 2db3_A 43 PVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP 122 (434)
T ss_dssp CEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC
T ss_pred eeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcc
Confidence 3444455667788899999999999999999999999999999999999999999999999999999999999887543
Q ss_pred ----CCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcC
Q 015454 99 ----SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTR 174 (406)
Q Consensus 99 ----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~ 174 (406)
..+.++||++|+++|+.|+++.+.+++...++.+..++|+.....+......+++|+|+||++|.+++.+....+.
T Consensus 123 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~ 202 (434)
T 2db3_A 123 HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFE 202 (434)
T ss_dssp CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCT
T ss_pred cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccc
Confidence 2356899999999999999999999998888888899999988888777888899999999999999988888889
Q ss_pred CcceeecchhhHHhccCcHHHHHHHHHhC--CCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEE
Q 015454 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYL--PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA 252 (406)
Q Consensus 175 ~~~~vV~DE~h~~~~~~~~~~~~~~~~~~--~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (406)
+++++|+||||.+.+.++...+..+...+ ++..|++++|||+++........++.++..+...........+.+.+..
T Consensus 203 ~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~ 282 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYE 282 (434)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEE
T ss_pred cCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEE
Confidence 99999999999999999999999998874 5678999999999999999999999888888776666566667777666
Q ss_pred ecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcc
Q 015454 253 VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVW 332 (406)
Q Consensus 253 ~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~ 332 (406)
+.... +...+..++..... ++||||++++.++.+++.|.+.++.+..+||++++.+|..++++|++|+.+|||||+++
T Consensus 283 ~~~~~-k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~ 360 (434)
T 2db3_A 283 VNKYA-KRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVA 360 (434)
T ss_dssp CCGGG-HHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGG
T ss_pred eCcHH-HHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhh
Confidence 65544 77888888887664 59999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEec-cCcHHHHHHHHHHHccccccCCcccccc
Q 015454 333 ARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK-NDDIKILRDIEQYYSTQIDEMPMNVADL 405 (406)
Q Consensus 333 ~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (406)
++|+|+|++++||+++.|.+...|+||+||+||.|+.|.+++|++ .++......+.+.++...+.+|+||.++
T Consensus 361 ~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 361 SRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp TSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred hCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 999999999999999999999999999999999999999999998 5578889999999999999999999763
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=8.2e-63 Score=460.28 Aligned_cols=392 Identities=80% Similarity=1.243 Sum_probs=360.0
Q ss_pred CCCCCcceeeccCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhh
Q 015454 15 GMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQT 94 (406)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~ 94 (406)
..+......+....++...+|+++++++.+.+++...||..|+++|.++++.+++++++++.+|||+|||++++++++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~ 98 (410)
T 2j0s_A 19 EEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 98 (410)
T ss_dssp -CCSSSCCCCCCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred cccCcccccCCCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHH
Confidence 33444444555666677889999999999999999999999999999999999999999999999999999999999988
Q ss_pred hccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcC
Q 015454 95 VDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTR 174 (406)
Q Consensus 95 ~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~ 174 (406)
+.....+.++||++|+++|+.|+.+.+.+++...++.+..+.++.....+......+++|+|+||++|...+........
T Consensus 99 l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~ 178 (410)
T 2j0s_A 99 LDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTR 178 (410)
T ss_dssp CCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred HhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHh
Confidence 86656677899999999999999999999998888999999999988888777778899999999999999988888888
Q ss_pred CcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEec
Q 015454 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE 254 (406)
Q Consensus 175 ~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (406)
.+++||+||+|.+.+.++...+..+...+++..|++++|||+++........++.++..+...........+.+.+....
T Consensus 179 ~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (410)
T 2j0s_A 179 AIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVE 258 (410)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEES
T ss_pred heeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeC
Confidence 99999999999999999999999999999889999999999999888888888888888777666677778888888888
Q ss_pred ccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccC
Q 015454 255 REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWAR 334 (406)
Q Consensus 255 ~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~ 334 (406)
....+...+..++.....+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||+|+++++
T Consensus 259 ~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 338 (410)
T 2j0s_A 259 REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 338 (410)
T ss_dssp STTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSS
T ss_pred cHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhC
Confidence 77778999999998888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccccC
Q 015454 335 GLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 406 (406)
Q Consensus 335 G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (406)
|+|+|++++||+++.|++...|.||+||+||.|++|.+++++.+.+...++.++++++..++++|.++.+++
T Consensus 339 Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (410)
T 2j0s_A 339 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 410 (410)
T ss_dssp SCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCTTTC
T ss_pred cCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccchhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988764
No 3
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2e-60 Score=444.95 Aligned_cols=381 Identities=65% Similarity=1.075 Sum_probs=334.1
Q ss_pred cCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEE
Q 015454 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (406)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~l 105 (406)
....+....|+++++++.+.+.+...|+..|+++|.++++.+++++++++.+|||+|||++++++++..+.....+.+++
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~l 112 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQAL 112 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEE
Confidence 33445567899999999999999999999999999999999999999999999999999999999998887666677899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHh-cCCCEEEechHHHHHHHHccCCCcCCcceeecchh
Q 015454 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (406)
Q Consensus 106 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~ 184 (406)
|++|+++|+.|+.+.+.+++...+..+....++........... .+++|+|+||++|.+.+.........+++||+|||
T Consensus 113 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEa 192 (414)
T 3eiq_A 113 VLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEA 192 (414)
T ss_dssp EECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSH
T ss_pred EEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECH
Confidence 99999999999999999998888888888888888777666554 66899999999999999888888888999999999
Q ss_pred hHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHH
Q 015454 185 DEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLC 264 (406)
Q Consensus 185 h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 264 (406)
|.+.+.++...+..++..+++..|++++|||+++........++.++..+...........+.+.+........+...+.
T Consensus 193 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 272 (414)
T 3eiq_A 193 DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLC 272 (414)
T ss_dssp HHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHH
T ss_pred HHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999888888877777778888888888888888999999
Q ss_pred HHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEE
Q 015454 265 DLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLV 344 (406)
Q Consensus 265 ~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~v 344 (406)
.++.....+++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++|
T Consensus 273 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~V 352 (414)
T 3eiq_A 273 DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352 (414)
T ss_dssp HHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCE
T ss_pred HHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEE
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccccC
Q 015454 345 INYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 406 (406)
Q Consensus 345 i~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (406)
|+++.|++...|.||+||+||.|++|.+++++.+.+...++.++++++..++++|.++.+||
T Consensus 353 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 414 (414)
T 3eiq_A 353 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 414 (414)
T ss_dssp EESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC------
T ss_pred EEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999886
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-59 Score=438.95 Aligned_cols=379 Identities=33% Similarity=0.535 Sum_probs=333.8
Q ss_pred cCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCC------
Q 015454 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS------ 99 (406)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~------ 99 (406)
...+.+..+|+++++++.+.++|...||..|+++|.++++.++.++++++.+|||+|||++|+++++..+....
T Consensus 8 ~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~ 87 (417)
T 2i4i_A 8 NNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALR 87 (417)
T ss_dssp TTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred CcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhh
Confidence 34456678899999999999999999999999999999999999999999999999999999999988764322
Q ss_pred ------------CceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHH
Q 015454 100 ------------REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK 167 (406)
Q Consensus 100 ------------~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~ 167 (406)
.+.+++|++|+++|+.|+++.+.++....++.+..+.|+.........+..+++|+|+||++|.+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~ 167 (417)
T 2i4i_A 88 AMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME 167 (417)
T ss_dssp HHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHH
T ss_pred ccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHH
Confidence 23579999999999999999999998888889999999988888888888889999999999999998
Q ss_pred ccCCCcCCcceeecchhhHHhccCcHHHHHHHHHh--CCC--CceEEEEEecCChHHHHHHHhcCCCCeEEEecCCcccc
Q 015454 168 RKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY--LPP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTL 243 (406)
Q Consensus 168 ~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~--~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (406)
...+.+..+++||+||+|.+.+.++...+..+... ++. ..|++++|||+++........++.++..+.........
T Consensus 168 ~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (417)
T 2i4i_A 168 RGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTS 247 (417)
T ss_dssp TTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CC
T ss_pred cCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 88788889999999999999999998888888774 222 57899999999998888888888888777666555556
Q ss_pred CCceEEEEEecccccHHHHHHHHHhhc-CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCC
Q 015454 244 EGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT 322 (406)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 322 (406)
..+.+.+...... .+...+..+++.. ..+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+
T Consensus 248 ~~i~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (417)
T 2i4i_A 248 ENITQKVVWVEES-DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 326 (417)
T ss_dssp SSEEEEEEECCGG-GHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred cCceEEEEEeccH-hHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC
Confidence 6666666655544 4778888888876 4568999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccc
Q 015454 323 TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNV 402 (406)
Q Consensus 323 ~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (406)
.+|||||+++++|+|+|++++||+++.|.+...|.||+||+||.|+.|.+++++++.+...++.+.+.+.....++|.++
T Consensus 327 ~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 406 (417)
T 2i4i_A 327 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWL 406 (417)
T ss_dssp SCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHH
T ss_pred CCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccc
Q 015454 403 ADL 405 (406)
Q Consensus 403 ~~~ 405 (406)
.++
T Consensus 407 ~~~ 409 (417)
T 2i4i_A 407 ENM 409 (417)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.7e-59 Score=433.58 Aligned_cols=373 Identities=40% Similarity=0.701 Sum_probs=334.9
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcC
Q 015454 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (406)
Q Consensus 30 ~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P 109 (406)
....+|+++++++.+.+++...||..|+++|.++++.+++++++++.+|||+|||++++++++..+.....+.+++|++|
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 97 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVP 97 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcC
Confidence 34568999999999999999999999999999999999999999999999999999999999988876656778999999
Q ss_pred cHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhc
Q 015454 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (406)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~ 189 (406)
+++|+.|+.+.+.++....++.+....++............+++|+|+||++|.+.+......+.++++||+||+|.+.+
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~ 177 (400)
T 1s2m_A 98 TRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLS 177 (400)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSS
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhh
Confidence 99999999999999988888888888898887777777777899999999999999888777888999999999999988
Q ss_pred cCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhh
Q 015454 190 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 269 (406)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (406)
.++...+..+...+++..+++++|||++......+...+..+..+... .......+..++..... ..+...+..+++.
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~k~~~l~~~~~~ 255 (400)
T 1s2m_A 178 RDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM-EELTLKGITQYYAFVEE-RQKLHCLNTLFSK 255 (400)
T ss_dssp HHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCC-SSCBCTTEEEEEEECCG-GGHHHHHHHHHHH
T ss_pred hchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEec-cccccCCceeEEEEech-hhHHHHHHHHHhh
Confidence 888888888888888889999999999999888888888777655433 23444555556555544 3478888888888
Q ss_pred cCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecC
Q 015454 270 LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL 349 (406)
Q Consensus 270 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 349 (406)
...+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.
T Consensus 256 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~ 335 (400)
T 1s2m_A 256 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF 335 (400)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC
T ss_pred cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCC
Confidence 87789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccc
Q 015454 350 PNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVAD 404 (406)
Q Consensus 350 ~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (406)
|++...|.||+||+||.|++|.+++++++.|...++.+++.+...++++|.++.+
T Consensus 336 p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 336 PKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp CSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred CCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccccc
Confidence 9999999999999999999999999999999999999999999999999988765
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.5e-57 Score=420.84 Aligned_cols=370 Identities=36% Similarity=0.657 Sum_probs=326.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 33 ~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
..|+++++++.+.++|...|+..|+++|.++++.+++++++++.+|||+|||++++++++..+.....+.++||++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 56999999999999999999999999999999999999999999999999999999999988776666778999999999
Q ss_pred HHHHHHHHHHHhccCc-ceeEEEEECCcchHHhHHHHhc-CCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhcc
Q 015454 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (406)
Q Consensus 113 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~ 190 (406)
|+.|+.+.+.++.... ++.+..+.|+.........+.. .++|+|+||++|...+......+.++++||+||||.+.++
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 9999999999987655 7888888888876665554443 4799999999999998888778889999999999999874
Q ss_pred -CcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCc-cccCCceEEEEEecccccHHHHHHHHHh
Q 015454 191 -GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE-LTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (406)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 268 (406)
++...+..+....++..|++++|||+++........++..+..+...... .........+..... ..+...+..+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~ 246 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD-NEKNRKLFDLLD 246 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCG-GGHHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCc-hhHHHHHHHHHH
Confidence 66777888888888889999999999999888888888888776655443 233445555555444 447888888888
Q ss_pred hcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEec
Q 015454 269 TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYD 348 (406)
Q Consensus 269 ~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 348 (406)
....+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++
T Consensus 247 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 326 (391)
T 1xti_A 247 VLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 326 (391)
T ss_dssp HSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESS
T ss_pred hcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhHhhhhhccCCCCceeEEEEeccC-cHHHHHHHHHHHccccccCCcccc
Q 015454 349 LPNNRELYIHRIGRSGRFGRKGVAINFVKND-DIKILRDIEQYYSTQIDEMPMNVA 403 (406)
Q Consensus 349 ~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 403 (406)
.|++...|.||+||+||.|++|.+++++.+. +.+.++.+++.++..++++|.+++
T Consensus 327 ~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (391)
T 1xti_A 327 MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID 382 (391)
T ss_dssp CCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCCC
T ss_pred CCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcccc
Confidence 9999999999999999999999999999876 557789999999999999997753
No 7
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.3e-59 Score=436.68 Aligned_cols=377 Identities=60% Similarity=1.014 Sum_probs=188.6
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEc
Q 015454 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (406)
Q Consensus 29 ~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~ 108 (406)
.+....|+++++++.+.+++...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 96 (394)
T 1fuu_A 17 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 96 (394)
T ss_dssp CCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEc
Confidence 34457799999999999999999999999999999999999999999999999999999999998887766677899999
Q ss_pred CcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHh
Q 015454 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (406)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~ 188 (406)
|+++|+.|+.+.+.++....++.+..+.|+........... +++|+|+||++|...+........++++||+||+|.+.
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 175 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhh
Confidence 99999999999999998888888988998887766555443 57999999999999988877778899999999999999
Q ss_pred ccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHh
Q 015454 189 SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (406)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 268 (406)
+.++...+..+...+++..|++++|||+++........++..+..+...........+...+........+...+..+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (394)
T 1fuu_A 176 SSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYD 255 (394)
T ss_dssp HTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------------
T ss_pred CCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHh
Confidence 98899999999999989999999999999998888888888888887776666666666666666666557777888887
Q ss_pred hcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEec
Q 015454 269 TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYD 348 (406)
Q Consensus 269 ~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 348 (406)
....+++||||++++.++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++
T Consensus 256 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~ 335 (394)
T 1fuu_A 256 SISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYD 335 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeC
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccccC
Q 015454 349 LPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 406 (406)
Q Consensus 349 ~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (406)
.|++...|.||+||+||.|++|.+++++.+++.+.++.++++++..++++|.++.+++
T Consensus 336 ~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 393 (394)
T 1fuu_A 336 LPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 393 (394)
T ss_dssp ----------------------------------------------------------
T ss_pred CCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhhc
Confidence 9999999999999999999999999999999999999999999999999999887653
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.6e-56 Score=418.31 Aligned_cols=374 Identities=39% Similarity=0.698 Sum_probs=329.4
Q ss_pred cCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcC--CcEEEECCCCCChhhHhHHHHHhhhccCCCcee
Q 015454 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQ 103 (406)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~--~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~ 103 (406)
..+.....+|+++++++.+.+++...|+..|+++|.++++.++.+ +++++.+|||+|||++|+++++..+.....+.+
T Consensus 18 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~ 97 (412)
T 3fht_A 18 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ 97 (412)
T ss_dssp TSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCC
T ss_pred CCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCC
Confidence 444456778999999999999999999999999999999999987 899999999999999999999998877777778
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCc-ceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc-cCCCcCCcceeec
Q 015454 104 ALILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVL 181 (406)
Q Consensus 104 ~lil~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~-~~~~~~~~~~vV~ 181 (406)
++|++|+++|+.|+.+.+.++.... +..+....++...... .....+|+|+||+++...+.+ ....+.++++||+
T Consensus 98 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 98 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEE
Confidence 9999999999999999999987653 5667666666554322 134579999999999998865 4566788999999
Q ss_pred chhhHHhc-cCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHH
Q 015454 182 DESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF 260 (406)
Q Consensus 182 DE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (406)
||||.+.. .++...+..+...+++..|++++|||+++.........+..+..+...........+.+.+........+.
T Consensus 175 DEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (412)
T 3fht_A 175 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKF 254 (412)
T ss_dssp ETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHH
T ss_pred eCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHH
Confidence 99999986 57777888888888889999999999999998999999888887777766677778888888888877889
Q ss_pred HHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCC
Q 015454 261 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340 (406)
Q Consensus 261 ~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 340 (406)
..+..++.....+++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|+
T Consensus 255 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 334 (412)
T 3fht_A 255 QALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQ 334 (412)
T ss_dssp HHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTT
T ss_pred HHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccC
Confidence 99999999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCC------ChhhhHhhhhhccCCCCceeEEEEeccCc-HHHHHHHHHHHccccccCCccc
Q 015454 341 VSLVINYDLPN------NRELYIHRIGRSGRFGRKGVAINFVKNDD-IKILRDIEQYYSTQIDEMPMNV 402 (406)
Q Consensus 341 ~~~vi~~~~~~------s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 402 (406)
+++||+++.|+ +...|.||+||+||.|+.|.+++++++.+ ...++.+++.+...++.++.+-
T Consensus 335 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 403 (412)
T 3fht_A 335 VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 403 (412)
T ss_dssp EEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC----
T ss_pred CCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCcc
Confidence 99999999994 66899999999999999999999998764 7889999999999999888544
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.1e-56 Score=415.20 Aligned_cols=366 Identities=41% Similarity=0.725 Sum_probs=327.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcC--CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEc
Q 015454 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~--~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~ 108 (406)
...+|+++++++.+.+++...|+..|+++|.++++.++.+ +++++++|||+|||++++++++..+.....+.+++|++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 3578999999999999999999999999999999999998 89999999999999999999999887766777899999
Q ss_pred CcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHh
Q 015454 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (406)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~ 188 (406)
|+++|+.|+.+.+.+++...++......++...... ..+++|+|+||++|...+......+.++++||+||||.+.
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 158 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNML 158 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhc
Confidence 999999999999999988777877777766543222 3458999999999999998888888999999999999998
Q ss_pred c-cCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHH
Q 015454 189 S-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267 (406)
Q Consensus 189 ~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 267 (406)
+ .++...+..+...+++..|++++|||+++.........+..+..+...............+........+...+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (395)
T 3pey_A 159 DQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELY 238 (395)
T ss_dssp HSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHH
Confidence 7 567788888888888899999999999999888888888888877776667777777888888877777888999999
Q ss_pred hhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEe
Q 015454 268 DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINY 347 (406)
Q Consensus 268 ~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~ 347 (406)
.....+++||||++++.++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++
T Consensus 239 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~ 318 (395)
T 3pey_A 239 GLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNY 318 (395)
T ss_dssp TTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEES
T ss_pred HhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEc
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC------ChhhhHhhhhhccCCCCceeEEEEeccC-cHHHHHHHHHHHc-cccccCCc
Q 015454 348 DLPN------NRELYIHRIGRSGRFGRKGVAINFVKND-DIKILRDIEQYYS-TQIDEMPM 400 (406)
Q Consensus 348 ~~~~------s~~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~ 400 (406)
+.|+ +...|.||+||+||.|++|.+++++.+. +...++.+++++. ..+..++.
T Consensus 319 ~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 379 (395)
T 3pey_A 319 DLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPT 379 (395)
T ss_dssp SCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCS
T ss_pred CCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCCh
Confidence 9998 9999999999999999999999999864 5577888888887 67776664
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.9e-55 Score=403.47 Aligned_cols=360 Identities=36% Similarity=0.644 Sum_probs=318.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcC-CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCc
Q 015454 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (406)
Q Consensus 32 ~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~-~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~ 110 (406)
..+|+++++++.+.++|.+.|+..|+++|.++++.++++ +++++.+|||+|||++++.+++..+... ++.+++|++|+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~ 83 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPT 83 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCC
Confidence 457999999999999999999999999999999999988 6999999999999999999988876543 45679999999
Q ss_pred HHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhcc
Q 015454 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (406)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~ 190 (406)
++|+.|+.+.+.++....++.+....++........... .++|+|+||++|.+.+......+.++++||+||+|.+.+.
T Consensus 84 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~ 162 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM 162 (367)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhh
Confidence 999999999999988777888888888887766555544 6899999999999999888778889999999999999999
Q ss_pred CcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhc
Q 015454 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (406)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (406)
++...+..+...+++..+++++|||+++........++..+..+..... ..+...+..... ..+...+..+++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~l~~~l~~- 236 (367)
T 1hv8_A 163 GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVNE-NERFEALCRLLKN- 236 (367)
T ss_dssp TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS----SSSEEEEEECCG-GGHHHHHHHHHCS-
T ss_pred chHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC----CCceEEEEEeCh-HHHHHHHHHHHhc-
Confidence 9888899999888889999999999999888888887776554443221 244444444443 4477788877773
Q ss_pred CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCC
Q 015454 271 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP 350 (406)
Q Consensus 271 ~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 350 (406)
...++||||++++.++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~ 316 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLP 316 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCC
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCC
Q 015454 351 NNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMP 399 (406)
Q Consensus 351 ~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (406)
++...|.||+||+||.|++|.+++++++.+...++.+++.++..+++++
T Consensus 317 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 317 QNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp SCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred CCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 9999999999999999999999999999999999999999999988775
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=5.2e-56 Score=421.80 Aligned_cols=369 Identities=40% Similarity=0.709 Sum_probs=175.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcC--CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEc
Q 015454 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~--~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~ 108 (406)
...+|+++++++.+.+++...||..|+++|.++++.++.+ +++++++|||||||++|+++++..+.....+.++||++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~ 169 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEEC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEe
Confidence 4568999999999999999999999999999999999987 89999999999999999999999987777777899999
Q ss_pred CcHHHHHHHHHHHHHhccCc-ceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc-cCCCcCCcceeecchhhH
Q 015454 109 PTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDE 186 (406)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~-~~~~~~~~~~vV~DE~h~ 186 (406)
|+++|+.|+.+.+.++.... ++.+....++...... .....+|+|+||++|..++.+ ..+.+.++++||+||+|.
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~ 246 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH
Confidence 99999999999998887643 5666666665543222 123468999999999998865 456678999999999999
Q ss_pred Hhc-cCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHH
Q 015454 187 MLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 265 (406)
Q Consensus 187 ~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 265 (406)
+.. .++...+..+...+++..|++++|||++..........+..+..+...........+.+.+........+...+..
T Consensus 247 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 326 (479)
T 3fmp_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 326 (479)
T ss_dssp HHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------
T ss_pred HhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHH
Confidence 986 5777788888888888999999999999998888888888888877777666667777777777766668888888
Q ss_pred HHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEE
Q 015454 266 LYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVI 345 (406)
Q Consensus 266 ~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 345 (406)
++.....+++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 327 ~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI 406 (479)
T 3fmp_B 327 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI 406 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEE
Confidence 88877778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCC------ChhhhHhhhhhccCCCCceeEEEEeccCc-HHHHHHHHHHHccccccCCccc
Q 015454 346 NYDLPN------NRELYIHRIGRSGRFGRKGVAINFVKNDD-IKILRDIEQYYSTQIDEMPMNV 402 (406)
Q Consensus 346 ~~~~~~------s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 402 (406)
+++.|. +...|+||+||+||.|+.|.+++++++.+ ...++.+++++...+..++.+-
T Consensus 407 ~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 470 (479)
T 3fmp_B 407 NFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 470 (479)
T ss_dssp ----------------------------------------------------------------
T ss_pred EecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCcc
Confidence 999994 56899999999999999999999998664 7889999999998888887543
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=7.8e-54 Score=415.05 Aligned_cols=375 Identities=26% Similarity=0.452 Sum_probs=305.3
Q ss_pred eeccCCcccccccccCC----CCHHHHHHHHHCCCCCChHHHHHhHHhhh--cCCcEEEECCCCCChhhHhHHHHHhhhc
Q 015454 23 FETTEGVEAITSFDAMG----IKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (406)
Q Consensus 23 ~~~~~~~~~~~~~~~~~----l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~--~~~~~il~~~tGsGKT~~~~~~i~~~~~ 96 (406)
..+........+|+++. +++++.+++...||..|+|+|.++++.++ .++++++.+|||+|||++|++|++..+.
T Consensus 7 ~~~~~~~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~ 86 (579)
T 3sqw_A 7 HVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLI 86 (579)
T ss_dssp EECCCSSCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ecCccCCCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHH
Confidence 33444445555666554 99999999999999999999999999999 6789999999999999999999998775
Q ss_pred cC----CCceeEEEEcCcHHHHHHHHHHHHHhcc----CcceeEEEEECCcchHHhHHHH-hcCCCEEEechHHHHHHHH
Q 015454 97 TS----SREVQALILSPTRELATQTEKVILAIGD----FINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIK 167 (406)
Q Consensus 97 ~~----~~~~~~lil~P~~~l~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~l~ 167 (406)
.. ..+.++||++|+++|+.|+.+.+.++.. .....+....++.........+ ..+++|+|+||++|..++.
T Consensus 87 ~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~ 166 (579)
T 3sqw_A 87 NTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLE 166 (579)
T ss_dssp HTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred hccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHH
Confidence 43 2346899999999999999999998752 2345677778887776666555 3478999999999998876
Q ss_pred cc-CCCcCCcceeecchhhHHhccCcHHHHHHHHHhCC-------CCceEEEEEecCChHHHHHHHhcCCCCeEEEecCC
Q 015454 168 RK-TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-------PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 239 (406)
Q Consensus 168 ~~-~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~-------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~ 239 (406)
.. ...+..+++||+||||.+.+++|...+..+...++ +..|++++|||+++........++..+..+.....
T Consensus 167 ~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~ 246 (579)
T 3sqw_A 167 KYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTV 246 (579)
T ss_dssp HHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESS
T ss_pred hccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeec
Confidence 64 34567799999999999999998888877765542 36789999999999888888888887766654332
Q ss_pred c----cccCCceEEEEEecccccH----HHHHHHHHhh-cCCcceEEEecchhhHHHHHHHHhcC---CceEEEeecCCC
Q 015454 240 E----LTLEGIKQFFVAVEREEWK----FDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRGY---NFTVSSMHGDMP 307 (406)
Q Consensus 240 ~----~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~-~~~~k~lif~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~ 307 (406)
. .....+.+.+......... ...+...+.. ....++||||++++.++.+++.|... ++.+..+||+++
T Consensus 247 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~ 326 (579)
T 3sqw_A 247 DKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKIT 326 (579)
T ss_dssp CSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSC
T ss_pred CccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 1 2223344444444433222 2233333333 44569999999999999999999876 889999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHH
Q 015454 308 QKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDI 387 (406)
Q Consensus 308 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 387 (406)
+.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.++..|+||+||+||.|+.|.+++++.+.+...++.+
T Consensus 327 ~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l 406 (579)
T 3sqw_A 327 QNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVREL 406 (579)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccccc
Q 015454 388 EQYYSTQIDE 397 (406)
Q Consensus 388 ~~~~~~~~~~ 397 (406)
++.....+..
T Consensus 407 ~~~~~~~~~~ 416 (579)
T 3sqw_A 407 EDAKNIVIAK 416 (579)
T ss_dssp HHHHCCCCCE
T ss_pred HHHhCCCccc
Confidence 9887665543
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.2e-52 Score=379.80 Aligned_cols=336 Identities=29% Similarity=0.531 Sum_probs=288.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHH
Q 015454 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (406)
Q Consensus 40 l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~ 119 (406)
+++.+.+++...|+..|+++|.++++.+.+++++++.+|||+|||++++.+++.. +.+++|++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999988764 4579999999999999999
Q ss_pred HHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHH
Q 015454 120 VILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 199 (406)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~ 199 (406)
.+.++....+..+..+.++........... .++|+|+||++|.+.+......+.++++||+||+|.+.++++...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 999998888888888888887766655544 4899999999999998887777888999999999999999998899999
Q ss_pred HHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEe
Q 015454 200 YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFC 279 (406)
Q Consensus 200 ~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~ 279 (406)
....+...+++++|||+++.....+..++.++..+... .........+....... ......+.....+++||||
T Consensus 154 ~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lvf~ 227 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW---RSKVQALRENKDKGVIVFV 227 (337)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS---HHHHHHHHTCCCSSEEEEC
T ss_pred HhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH---HHHHHHHHhCCCCcEEEEE
Confidence 99988889999999999999888888888776655322 23344444444444332 2223555566678999999
Q ss_pred cchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhh
Q 015454 280 NTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR 359 (406)
Q Consensus 280 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~ 359 (406)
++++.++.+++.|. .+..+||+++..+|..++++|++|+.+|||+|+++++|+|+|++++||+++.|++...|.||
T Consensus 228 ~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~ 303 (337)
T 2z0m_A 228 RTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHR 303 (337)
T ss_dssp SCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHH
T ss_pred cCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHh
Confidence 99999999998887 57889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCceeEEEEeccCcHHHHHHHHHHHcc
Q 015454 360 IGRSGRFGRKGVAINFVKNDDIKILRDIEQYYST 393 (406)
Q Consensus 360 ~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
+||+||.|++|.+++++. .+...++.+++.++.
T Consensus 304 ~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 304 IGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp HTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred cCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 999999999999999999 888888888777653
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.4e-52 Score=406.31 Aligned_cols=358 Identities=27% Similarity=0.470 Sum_probs=294.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHhHHhhh--cCCcEEEECCCCCChhhHhHHHHHhhhccCC----CceeEEEEcCcHHH
Q 015454 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----REVQALILSPTREL 113 (406)
Q Consensus 40 l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~--~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~----~~~~~lil~P~~~l 113 (406)
+++.+.+++...|+..|+++|.++++.++ .++++++++|||+|||++|++|++..+.... .+.++||++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 6789999999999999999999998875443 24579999999999
Q ss_pred HHHHHHHHHHhcc----CcceeEEEEECCcchHHhHHHH-hcCCCEEEechHHHHHHHHcc-CCCcCCcceeecchhhHH
Q 015454 114 ATQTEKVILAIGD----FINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEM 187 (406)
Q Consensus 114 ~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~l~~~-~~~~~~~~~vV~DE~h~~ 187 (406)
+.|+.+.+.++.. .....+..+.++.........+ ..+++|+|+||++|...+.+. ...+..+++||+||||.+
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 9999999988643 2235567778887766665554 457899999999999887654 334677999999999999
Q ss_pred hccCcHHHHHHHHHhC-------CCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCc----cccCCceEEEEEeccc
Q 015454 188 LSRGFKDQIYDVYRYL-------PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE----LTLEGIKQFFVAVERE 256 (406)
Q Consensus 188 ~~~~~~~~~~~~~~~~-------~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 256 (406)
.++++...+..+...+ .+..|++++|||+++........++..+..+...... .....+.+.+......
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 9999888877776554 2367899999999998888888888777665543322 2223344444444433
Q ss_pred ccH----HHHHHHHHhh-cCCcceEEEecchhhHHHHHHHHhcC---CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEE
Q 015454 257 EWK----FDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRGY---NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLIT 328 (406)
Q Consensus 257 ~~~----~~~l~~~~~~-~~~~k~lif~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~ 328 (406)
... ...+...+.. ....++||||++++.++.+++.|... ++.+..+||++++.+|..+++.|++|+.+||||
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 222 2223333332 44569999999999999999999876 889999999999999999999999999999999
Q ss_pred cCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHcccccc
Q 015454 329 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDE 397 (406)
Q Consensus 329 t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
|+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.+++++.+.+...++.+++.....+..
T Consensus 399 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 467 (563)
T 3i5x_A 399 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 467 (563)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred cchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999887765543
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-54 Score=411.80 Aligned_cols=369 Identities=37% Similarity=0.638 Sum_probs=272.3
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcC--CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEE
Q 015454 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (406)
Q Consensus 30 ~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~--~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil 107 (406)
.....+...++++.+.+.+...|+..|+++|.++++.+.++ +++++.+|||||||++++++++..+.....+.++||+
T Consensus 116 ~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl 195 (508)
T 3fho_A 116 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICL 195 (508)
T ss_dssp -----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEE
T ss_pred cccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 34445667778899999999999999999999999999998 8999999999999999999999988777767789999
Q ss_pred cCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHH
Q 015454 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (406)
Q Consensus 108 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~ 187 (406)
+|+++|+.|+.+.+.++............++..... ...+++|+|+||+++...+......+.++++||+||||.+
T Consensus 196 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~ 271 (508)
T 3fho_A 196 APSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNM 271 (508)
T ss_dssp CSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHH
T ss_pred ECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhh
Confidence 999999999999999988766665554444433221 2346899999999999999888888899999999999999
Q ss_pred hc-cCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHH
Q 015454 188 LS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 266 (406)
Q Consensus 188 ~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (406)
.+ .++...+..+...+++..|++++|||+++........+...+..+...........+...+........+...+..+
T Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l 351 (508)
T 3fho_A 272 LDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVEL 351 (508)
T ss_dssp TTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHH
Confidence 87 56788888899999889999999999999888888888888877776666666677777777777777788889999
Q ss_pred HhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEE
Q 015454 267 YDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN 346 (406)
Q Consensus 267 ~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~ 346 (406)
++....+++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+
T Consensus 352 l~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~ 431 (508)
T 3fho_A 352 YGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN 431 (508)
T ss_dssp HC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC
T ss_pred HHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE
Confidence 98888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC------CChhhhHhhhhhccCCCCceeEEEEec-cCcHHHHHHHHHHHccccccCCccc
Q 015454 347 YDLP------NNRELYIHRIGRSGRFGRKGVAINFVK-NDDIKILRDIEQYYSTQIDEMPMNV 402 (406)
Q Consensus 347 ~~~~------~s~~~~~Q~~GR~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (406)
++.| .+...|.||+||+||.|++|.+++++. +.+...++.++++++..+++++.+-
T Consensus 432 ~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~ 494 (508)
T 3fho_A 432 YDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDD 494 (508)
T ss_dssp ----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC------
T ss_pred ECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCcc
Confidence 9999 789999999999999999999999988 4567889999999999999988654
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=8.3e-51 Score=390.23 Aligned_cols=339 Identities=15% Similarity=0.248 Sum_probs=271.6
Q ss_pred ccCCCCHHHHHHHHH-CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHH
Q 015454 36 DAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (406)
Q Consensus 36 ~~~~l~~~i~~~l~~-~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~ 114 (406)
.++++++.+.+.|.. +|+..|+|+|.++++.++.|+++++.+|||+|||++|++|++.. ..++||++|+++|+
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVisP~~~L~ 97 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------DGFTLVICPLISLM 97 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------SSEEEEECSCHHHH
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------CCcEEEEeCHHHHH
Confidence 458899999999998 69999999999999999999999999999999999999998753 34799999999999
Q ss_pred HHHHHHHHHhccCcceeEEEEECCcchHHhHHH------HhcCCCEEEechHHHH------HHHHccCCCcCCcceeecc
Q 015454 115 TQTEKVILAIGDFINIQAHACVGGKSVGEDIRK------LEHGVHVVSGTPGRVC------DMIKRKTLRTRAIKLLVLD 182 (406)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~iii~T~~~l~------~~l~~~~~~~~~~~~vV~D 182 (406)
.|+.+.+.++ ++.+..+.++....+.... .....+|+|+||++|. +.+.. .....++++||+|
T Consensus 98 ~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iViD 172 (591)
T 2v1x_A 98 EDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAVD 172 (591)
T ss_dssp HHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEEE
T ss_pred HHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEEE
Confidence 9999999887 4667777777665543322 2356899999999874 22222 2335678999999
Q ss_pred hhhHHhccC--cHHHHH---HHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecc-c
Q 015454 183 ESDEMLSRG--FKDQIY---DVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER-E 256 (406)
Q Consensus 183 E~h~~~~~~--~~~~~~---~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 256 (406)
|||.+..++ |...+. .+...+ +..+++++|||+++.....+...+..+....... ....+++...+..... .
T Consensus 173 EAH~is~~g~dfr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~~ 250 (591)
T 2v1x_A 173 EVHCCSQWGHDFRPDYKALGILKRQF-PNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQKPSNT 250 (591)
T ss_dssp TGGGGSTTCTTCCGGGGGGGHHHHHC-TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEECCSSH
T ss_pred CcccccccccccHHHHHHHHHHHHhC-CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeCCCcH
Confidence 999998876 544433 233443 5688999999999988887777766543333222 2233343333222221 2
Q ss_pred ccHHHHHHHHHhh-cCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCC
Q 015454 257 EWKFDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARG 335 (406)
Q Consensus 257 ~~~~~~l~~~~~~-~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 335 (406)
..+...+..++.. ...+++||||++++.++.+++.|...|+.+..+||+++..+|..++++|.+|+.+|||||+++++|
T Consensus 251 ~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~G 330 (591)
T 2v1x_A 251 EDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMG 330 (591)
T ss_dssp HHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTT
T ss_pred HHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcC
Confidence 3355666677754 355799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHH
Q 015454 336 LDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDI 387 (406)
Q Consensus 336 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 387 (406)
+|+|++++||+++.|.|...|.|++||+||.|++|.|++++.+.|...+..+
T Consensus 331 ID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 331 IDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp CCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998776655443
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.4e-50 Score=381.71 Aligned_cols=339 Identities=18% Similarity=0.316 Sum_probs=272.6
Q ss_pred cccccCCCCHHHHHHHHH-CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcH
Q 015454 33 TSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (406)
Q Consensus 33 ~~~~~~~l~~~i~~~l~~-~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~ 111 (406)
..|+++++++.+.+.|.+ +|+..|+++|.++++.+++|+++++.+|||+|||++|++|++.. ..+++|++|++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~ 75 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLI 75 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChH
Confidence 468999999999999998 89999999999999999999999999999999999999988754 24689999999
Q ss_pred HHHHHHHHHHHHhccCcceeEEEEECCcchHHhHH----HHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHH
Q 015454 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR----KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (406)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~ 187 (406)
+|+.|+.+.+..++ +.+..+.++....+... ......+|+++||++|........+...++++||+||||.+
T Consensus 76 aL~~q~~~~l~~~g----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i 151 (523)
T 1oyw_A 76 SLMKDQVDQLQANG----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI 151 (523)
T ss_dssp HHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGG
T ss_pred HHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcccc
Confidence 99999999998863 56666777665443322 22355899999999986322222233467899999999999
Q ss_pred hccC--cHHHHH---HHHHhCCCCceEEEEEecCChHHHHHHHhcC--CCCeEEEecCCccccCCceEEEEEecccccHH
Q 015454 188 LSRG--FKDQIY---DVYRYLPPDLQVVLISATLPHEILEMTTKFM--TDPVKILVKRDELTLEGIKQFFVAVEREEWKF 260 (406)
Q Consensus 188 ~~~~--~~~~~~---~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (406)
.+++ +...+. .+...+ +..+++++|||+++.....+...+ .++.... . ....+++... ... ...+.
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~--~~~r~~l~~~--v~~-~~~~~ 224 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-S--SFDRPNIRYM--LME-KFKPL 224 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-C--CCCCTTEEEE--EEE-CSSHH
T ss_pred CcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-C--CCCCCceEEE--EEe-CCCHH
Confidence 8776 444433 344455 457799999999987766555443 2333222 1 1223333322 222 23467
Q ss_pred HHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCC
Q 015454 261 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340 (406)
Q Consensus 261 ~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 340 (406)
..+..++.....+++||||++++.++.+++.|...++.+..+||+++..+|..+++.|.+|+.+|||||+++++|+|+|+
T Consensus 225 ~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~ 304 (523)
T 1oyw_A 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPN 304 (523)
T ss_dssp HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTT
T ss_pred HHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccC
Confidence 77888888777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHH
Q 015454 341 VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 388 (406)
Q Consensus 341 ~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~ 388 (406)
+++||+++.|.|...|.|++||+||.|++|.+++++.+.|...++.+.
T Consensus 305 v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp CCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred ccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887776555443
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.6e-49 Score=366.37 Aligned_cols=332 Identities=20% Similarity=0.310 Sum_probs=260.2
Q ss_pred HHHHHHHH-CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHH
Q 015454 43 DLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (406)
Q Consensus 43 ~i~~~l~~-~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (406)
.+.+.+.. .++ .|+++|.++++.+++|+++++++|||+|||++++++++... ..+.+++|++|+++|+.|+.+.+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHH
Confidence 33444444 356 79999999999999999999999999999999988887765 34567999999999999999999
Q ss_pred HHhccCcceeEEEEECCcch---HHhHHHHhcC-CCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhc--------
Q 015454 122 LAIGDFINIQAHACVGGKSV---GEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-------- 189 (406)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~-------- 189 (406)
.+++. .++.+..++|+... ......+..+ ++|+|+||++|.+.+.. ....++++||+||||.+..
T Consensus 85 ~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~ 161 (414)
T 3oiy_A 85 QKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTL 161 (414)
T ss_dssp HHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHH
T ss_pred HHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhH
Confidence 99887 78899999999887 4444555555 89999999999877664 5556899999999998764
Q ss_pred ---cCcHHH-HHHHHHhCC-----------CCceEEEEEecC-ChHHH-HHHHhcCCCCeEEEecCCccccCCceEEEEE
Q 015454 190 ---RGFKDQ-IYDVYRYLP-----------PDLQVVLISATL-PHEIL-EMTTKFMTDPVKILVKRDELTLEGIKQFFVA 252 (406)
Q Consensus 190 ---~~~~~~-~~~~~~~~~-----------~~~~~i~lSAT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (406)
.++... +..+...++ +..|++++|||+ +.... ........ +...........+.+.+..
T Consensus 162 l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~ 237 (414)
T 3oiy_A 162 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRIS 237 (414)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEES
T ss_pred HhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeec
Confidence 445555 666666655 778999999994 43322 12222221 1111222333444544443
Q ss_pred ecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEE-EeecCCCHHHHHHHHHHHhcCCCcEEEE---
Q 015454 253 VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVS-SMHGDMPQKERDAIMGEFRSGTTRVLIT--- 328 (406)
Q Consensus 253 ~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vli~--- 328 (406)
. .+...+..+++... +++||||++++.++.+++.|...++.+. .+||. +|. ++.|++|+.+||||
T Consensus 238 ~----~~~~~l~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s 306 (414)
T 3oiy_A 238 S----RSKEKLVELLEIFR-DGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQA 306 (414)
T ss_dssp S----CCHHHHHHHHHHHC-SSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECC
T ss_pred c----CHHHHHHHHHHHcC-CCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecC
Confidence 3 25556677776643 7999999999999999999999999998 89985 444 99999999999999
Q ss_pred -cCcccCCCCCCC-CCEEEEecCC--CChhhhHhhhhhccCCC----CceeEEEEeccCcHHHHHHHHHHHc--cccccC
Q 015454 329 -TDVWARGLDVQQ-VSLVINYDLP--NNRELYIHRIGRSGRFG----RKGVAINFVKNDDIKILRDIEQYYS--TQIDEM 398 (406)
Q Consensus 329 -t~~~~~G~d~~~-~~~vi~~~~~--~s~~~~~Q~~GR~~R~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 398 (406)
|+++++|+|+|+ +++||+++.| .+...|+||+||+||.| +.|.+++++ .+...++.+++.+. ..++..
T Consensus 307 ~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~~~~ 384 (414)
T 3oiy_A 307 YYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEII 384 (414)
T ss_dssp TTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCCCEE
T ss_pred cCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhccccccccc
Confidence 999999999999 9999999999 99999999999999987 478898888 67778888888887 554433
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.6e-46 Score=367.95 Aligned_cols=354 Identities=16% Similarity=0.241 Sum_probs=267.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHhHHh-hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcH
Q 015454 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (406)
Q Consensus 33 ~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~-i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~ 111 (406)
.+|+++++++++.+.+...||..|+++|.++++. +.+++++++++|||||||+++.++++..+... +.+++|++|++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r 85 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLR 85 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcH
Confidence 5699999999999999999999999999999999 78899999999999999999999998876532 45899999999
Q ss_pred HHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC
Q 015454 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (406)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~ 191 (406)
+|+.|+++.++.+. ..++.+....|+....... ....+|+|+||+++...+.+....+.++++||+||+|.+.+..
T Consensus 86 ~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 86 ALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp HHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT
T ss_pred HHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc
Confidence 99999999996554 3477888888876544331 2368999999999999888876667889999999999998777
Q ss_pred cHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEE------------EEEec-----
Q 015454 192 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQF------------FVAVE----- 254 (406)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~----- 254 (406)
++..+..+...++ ..|++++|||+++. ..+..++..+. +....... ..... ....+
T Consensus 162 ~~~~l~~i~~~~~-~~~ii~lSATl~n~--~~~~~~l~~~~-~~~~~r~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (715)
T 2va8_A 162 RGPVVESVTIRAK-RRNLLALSATISNY--KQIAKWLGAEP-VATNWRPV---PLIEGVIYPERKKKEYNVIFKDNTTKK 234 (715)
T ss_dssp THHHHHHHHHHHH-TSEEEEEESCCTTH--HHHHHHHTCEE-EECCCCSS---CEEEEEEEECSSTTEEEEEETTSCEEE
T ss_pred cchHHHHHHHhcc-cCcEEEEcCCCCCH--HHHHHHhCCCc-cCCCCCCC---CceEEEEecCCcccceeeecCcchhhh
Confidence 7777777776665 78999999999752 33333333221 11111111 11110 00111
Q ss_pred --ccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCC------------------------------------
Q 015454 255 --REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYN------------------------------------ 296 (406)
Q Consensus 255 --~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~------------------------------------ 296 (406)
........+...+. ..+++||||++++.++.+++.|.+..
T Consensus 235 ~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 312 (715)
T 2va8_A 235 VHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLIS 312 (715)
T ss_dssp EESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHh
Confidence 11334455555554 34799999999999999999987642
Q ss_pred ceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEE----ec-------CCCChhhhHhhhhhccC
Q 015454 297 FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----YD-------LPNNRELYIHRIGRSGR 365 (406)
Q Consensus 297 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~-------~~~s~~~~~Q~~GR~~R 365 (406)
..+..+||+++..+|..+++.|++|.++|||||+++++|+|+|++++||. ++ .|.|..+|.||+||+||
T Consensus 313 ~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR 392 (715)
T 2va8_A 313 KGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGR 392 (715)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCC
T ss_pred cCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCC
Confidence 24889999999999999999999999999999999999999999999998 77 78999999999999999
Q ss_pred CCC--ceeEEEEeccCcHHHHHHHHHHHccccccCCccc
Q 015454 366 FGR--KGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNV 402 (406)
Q Consensus 366 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (406)
.|. .|.|++++.+.+. ....+.+++....+.+...+
T Consensus 393 ~g~~~~G~~~~l~~~~~~-~~~~~~~~l~~~~e~~~s~l 430 (715)
T 2va8_A 393 PGFDQIGESIVVVRDKED-VDRVFKKYVLSDVEPIESKL 430 (715)
T ss_dssp TTTCSCEEEEEECSCGGG-HHHHHHHTTSSCCCCCCCSC
T ss_pred CCCCCCceEEEEeCCchH-HHHHHHHHHcCCCCCceecC
Confidence 984 6889999877653 11223344444444444433
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.2e-46 Score=371.63 Aligned_cols=352 Identities=17% Similarity=0.232 Sum_probs=272.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHhHHh-hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 34 ~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~-i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
+|+++++++.+.+.+...|+..|+++|.++++. +.+++++++++|||||||+++.++++..+... +.+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHH
Confidence 588999999999999999999999999999998 88899999999999999999999998776532 458999999999
Q ss_pred HHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCc
Q 015454 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (406)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~ 192 (406)
|+.|+++.+.++. ..++.+..++|+....... ....+|+|+||+++...+.+....+.++++||+||+|.+.+..+
T Consensus 80 La~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (720)
T 2zj8_A 80 LAEEKFQEFQDWE-KIGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDR 155 (720)
T ss_dssp GHHHHHHHTGGGG-GGTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHHHHHHHHH-hcCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcc
Confidence 9999999997654 3477888888876543321 23589999999999998887666678899999999999988777
Q ss_pred HHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEE------EEec----ccccHHHH
Q 015454 193 KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFF------VAVE----REEWKFDT 262 (406)
Q Consensus 193 ~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----~~~~~~~~ 262 (406)
+..+..++..++...|++++|||+++. ..+..++.... +..... +......+ .... ........
T Consensus 156 ~~~~~~ll~~l~~~~~ii~lSATl~n~--~~~~~~l~~~~-~~~~~r---p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T 2zj8_A 156 GATLEVILAHMLGKAQIIGLSATIGNP--EELAEWLNAEL-IVSDWR---PVKLRRGVFYQGFVTWEDGSIDRFSSWEEL 229 (720)
T ss_dssp HHHHHHHHHHHBTTBEEEEEECCCSCH--HHHHHHTTEEE-EECCCC---SSEEEEEEEETTEEEETTSCEEECSSTTHH
T ss_pred cHHHHHHHHHhhcCCeEEEEcCCcCCH--HHHHHHhCCcc-cCCCCC---CCcceEEEEeCCeeeccccchhhhhHHHHH
Confidence 888888887776689999999999752 33444443211 111101 11111111 1111 02234455
Q ss_pred HHHHHhhcCCcceEEEecchhhHHHHHHHHhcC---------------------------------CceEEEeecCCCHH
Q 015454 263 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY---------------------------------NFTVSSMHGDMPQK 309 (406)
Q Consensus 263 l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~---------------------------------~~~~~~~~~~~~~~ 309 (406)
+...+.. .+++||||++++.++.++..|.+. ...+..+||+++..
T Consensus 230 ~~~~~~~--~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~ 307 (720)
T 2zj8_A 230 VYDAIRK--KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRD 307 (720)
T ss_dssp HHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred HHHHHhC--CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHH
Confidence 5555543 479999999999999998888642 12489999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEE----ec----CCCChhhhHhhhhhccCCCC--ceeEEEEeccC
Q 015454 310 ERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----YD----LPNNRELYIHRIGRSGRFGR--KGVAINFVKND 379 (406)
Q Consensus 310 ~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~----~~~s~~~~~Q~~GR~~R~~~--~~~~~~~~~~~ 379 (406)
+|..+++.|++|.++|||||+++++|+|+|++++||. ++ .|.+..+|.||+||+||.|. .|.|++++.+.
T Consensus 308 ~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 387 (720)
T 2zj8_A 308 ERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSD 387 (720)
T ss_dssp HHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSS
T ss_pred HHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCc
Confidence 9999999999999999999999999999999999997 44 58899999999999999984 68899999887
Q ss_pred cHHHHHHHHHHHccccccCCcc
Q 015454 380 DIKILRDIEQYYSTQIDEMPMN 401 (406)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~ 401 (406)
+... .+++++......+...
T Consensus 388 ~~~~--~~~~~~~~~~~~i~s~ 407 (720)
T 2zj8_A 388 DPRE--VMNHYIFGKPEKLFSQ 407 (720)
T ss_dssp CHHH--HHHHHTTSCCCCCCCC
T ss_pred cHHH--HHHHHhcCCCCCcEee
Confidence 7332 3345555555554433
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.9e-47 Score=377.30 Aligned_cols=354 Identities=21% Similarity=0.290 Sum_probs=232.3
Q ss_pred HHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCC--CceeEEEEcCcHHHHHHHHHHHH
Q 015454 45 LRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS--REVQALILSPTRELATQTEKVIL 122 (406)
Q Consensus 45 ~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~--~~~~~lil~P~~~l~~q~~~~~~ 122 (406)
..++...|+..|+++|.++++.++.|+++++++|||+|||++++++++..+.... .+.++||++|+++|+.|+.+.+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 3556778999999999999999999999999999999999999999988775443 23679999999999999999999
Q ss_pred HhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCC-CcCCcceeecchhhHHhccCcH-HHHHHHH
Q 015454 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRGFK-DQIYDVY 200 (406)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~-~~~~~~~vV~DE~h~~~~~~~~-~~~~~~~ 200 (406)
++....++.+..+.|+............+.+|+|+||++|.+.+..... .+.++++||+||||.+.+.... ..+...+
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l 162 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL 162 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHH
Confidence 9987778899999998776555555556799999999999999887766 6888999999999998755422 2222222
Q ss_pred Hh-----CCCCceEEEEEecCC-------hHHHHHHHhc----------------------CCCCeEEEecCCcccc---
Q 015454 201 RY-----LPPDLQVVLISATLP-------HEILEMTTKF----------------------MTDPVKILVKRDELTL--- 243 (406)
Q Consensus 201 ~~-----~~~~~~~i~lSAT~~-------~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~--- 243 (406)
.. .++.+++++||||+. ......+... ...|............
T Consensus 163 ~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~f 242 (696)
T 2ykg_A 163 DQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF 242 (696)
T ss_dssp HHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHH
T ss_pred HHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChH
Confidence 22 246789999999997 2222222111 1111111000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015454 244 -------------------------------------------------------------------------------- 243 (406)
Q Consensus 244 -------------------------------------------------------------------------------- 243 (406)
T Consensus 243 s~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 322 (696)
T 2ykg_A 243 KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 322 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHH
Confidence
Q ss_pred ----------------------------CCceEEEE---------------EecccccHHHHHHHHHhhc----CCcceE
Q 015454 244 ----------------------------EGIKQFFV---------------AVEREEWKFDTLCDLYDTL----TITQAV 276 (406)
Q Consensus 244 ----------------------------~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~----~~~k~l 276 (406)
..+.+.+. .......+...+..++... ..+++|
T Consensus 323 ~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~I 402 (696)
T 2ykg_A 323 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI 402 (696)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred HhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEE
Confidence 00000000 0001234666677777655 557999
Q ss_pred EEecchhhHHHHHHHHhcCC----ceEEEe--------ecCCCHHHHHHHHHHHhc-CCCcEEEEcCcccCCCCCCCCCE
Q 015454 277 IFCNTKRKVDWLTEKMRGYN----FTVSSM--------HGDMPQKERDAIMGEFRS-GTTRVLITTDVWARGLDVQQVSL 343 (406)
Q Consensus 277 if~~~~~~~~~l~~~l~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~ 343 (406)
|||++++.++.+++.|...+ +.+..+ ||+++..+|..++++|++ |+.+|||||+++++|+|+|++++
T Consensus 403 IF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~ 482 (696)
T 2ykg_A 403 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 482 (696)
T ss_dssp EECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSE
T ss_pred EEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCE
Confidence 99999999999999999887 788888 559999999999999998 99999999999999999999999
Q ss_pred EEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHH----HHHHccccccCCc
Q 015454 344 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDI----EQYYSTQIDEMPM 400 (406)
Q Consensus 344 vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 400 (406)
||++++|+++..|+||+|| ||. +.|.+++++...+....+.+ ++.+.....+++.
T Consensus 483 VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 541 (696)
T 2ykg_A 483 VILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQT 541 (696)
T ss_dssp EEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999 998 78999999998877665555 5556555555554
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.6e-45 Score=355.64 Aligned_cols=329 Identities=18% Similarity=0.222 Sum_probs=200.9
Q ss_pred CCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCC--ceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 53 ~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
...|+++|.++++.++.++++++.+|||+|||++++++++..+..... +.++||++|+++|+.|+.+.+.++....++
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 347999999999999999999999999999999999999888765432 567999999999999999999999877788
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCC-CcCCcceeecchhhHHhccCcHHHH-HHHHHh----CC
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRGFKDQI-YDVYRY----LP 204 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~-~~~~~~~vV~DE~h~~~~~~~~~~~-~~~~~~----~~ 204 (406)
.+..++|+......+.....+++|+|+||++|.+.+..... .+.++++||+||||.+.+.+....+ ..+... ..
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 164 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSAS 164 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC--
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcccC
Confidence 99999998877666666666789999999999999988766 7888999999999999876633322 222222 13
Q ss_pred CCceEEEEEecCChH-----------HHHHHHhc------------------CCCCeEEEecCCccccCC----------
Q 015454 205 PDLQVVLISATLPHE-----------ILEMTTKF------------------MTDPVKILVKRDELTLEG---------- 245 (406)
Q Consensus 205 ~~~~~i~lSAT~~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~---------- 245 (406)
+.++++++|||+... +......+ ...+..............
T Consensus 165 ~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (556)
T 4a2p_A 165 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMS 244 (556)
T ss_dssp -CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHH
T ss_pred CCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHH
Confidence 568899999999431 11111111 111111110000000000
Q ss_pred -----------ceEEE----------------------------------------------------------------
Q 015454 246 -----------IKQFF---------------------------------------------------------------- 250 (406)
Q Consensus 246 -----------~~~~~---------------------------------------------------------------- 250 (406)
.....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 324 (556)
T 4a2p_A 245 ETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARII 324 (556)
T ss_dssp HHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 00000
Q ss_pred ----------------------------------------EEecccccHHHHHHHHHhh----cCCcceEEEecchhhHH
Q 015454 251 ----------------------------------------VAVEREEWKFDTLCDLYDT----LTITQAVIFCNTKRKVD 286 (406)
Q Consensus 251 ----------------------------------------~~~~~~~~~~~~l~~~~~~----~~~~k~lif~~~~~~~~ 286 (406)
........+...+..++.. ....++||||+++..++
T Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~ 404 (556)
T 4a2p_A 325 DALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVS 404 (556)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHH
Confidence 0000012244555555543 34579999999999999
Q ss_pred HHHHHHhcC------------CceEEEeecCCCHHHHHHHHHHHhc-CCCcEEEEcCcccCCCCCCCCCEEEEecCCCCh
Q 015454 287 WLTEKMRGY------------NFTVSSMHGDMPQKERDAIMGEFRS-GTTRVLITTDVWARGLDVQQVSLVINYDLPNNR 353 (406)
Q Consensus 287 ~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~ 353 (406)
.+++.|... |.....+||+++..+|..++++|++ |+++|||||+++++|+|+|++++||++++|+|+
T Consensus 405 ~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~ 484 (556)
T 4a2p_A 405 ALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNV 484 (556)
T ss_dssp HHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCSCH
T ss_pred HHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCH
Confidence 999999875 4555667888999999999999999 999999999999999999999999999999999
Q ss_pred hhhHhhhhhccCCCCceeEEEEeccCcHHH
Q 015454 354 ELYIHRIGRSGRFGRKGVAINFVKNDDIKI 383 (406)
Q Consensus 354 ~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~ 383 (406)
..|+||+|| ||. ++|.+++++.+.+.+.
T Consensus 485 ~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 485 TKMIQVRGR-GRA-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp HHHHHC----------CCEEEEESCHHHHH
T ss_pred HHHHHhcCC-CCC-CCceEEEEEeCcchHH
Confidence 999999999 999 7899999998876543
No 23
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.2e-45 Score=356.05 Aligned_cols=331 Identities=18% Similarity=0.229 Sum_probs=230.6
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCC--ceeEEEEcCcHHHHHHHHHHHHHhccCcceeE
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFINIQA 132 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (406)
.|+++|.++++.++.++++++.+|||+|||++++++++..+..... +.++||++|+++|+.|+.+.+.++....++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 7999999999999999999999999999999999999988765432 56799999999999999999999988778999
Q ss_pred EEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCC-CcCCcceeecchhhHHhccCc-HHHHHHHHHhC-----CC
Q 015454 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRGF-KDQIYDVYRYL-----PP 205 (406)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~-~~~~~~~vV~DE~h~~~~~~~-~~~~~~~~~~~-----~~ 205 (406)
..++|+......+.....+++|+|+||++|...+..... .+.++++||+||||.+.+.+. ...+..+.... .+
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDP 163 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCC
Confidence 999999877766666666799999999999999888766 688899999999999977642 22232333321 24
Q ss_pred CceEEEEEecCChH----------HHHHHHhcCCCCeEEEecCCc----cccCCceEEEEEec-----------------
Q 015454 206 DLQVVLISATLPHE----------ILEMTTKFMTDPVKILVKRDE----LTLEGIKQFFVAVE----------------- 254 (406)
Q Consensus 206 ~~~~i~lSAT~~~~----------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------------- 254 (406)
.++++++|||+... ....+...+............ .........+....
T Consensus 164 ~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (555)
T 3tbk_A 164 LPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKE 243 (555)
T ss_dssp CCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHH
T ss_pred CCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHH
Confidence 57899999999541 111111222211111000000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015454 255 -------------------------------------------------------------------------------- 254 (406)
Q Consensus 255 -------------------------------------------------------------------------------- 254 (406)
T Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 323 (555)
T 3tbk_A 244 TEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMT 323 (555)
T ss_dssp HHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence
Q ss_pred --------------------------------------------ccccHHHHHHHHHhh----cCCcceEEEecchhhHH
Q 015454 255 --------------------------------------------REEWKFDTLCDLYDT----LTITQAVIFCNTKRKVD 286 (406)
Q Consensus 255 --------------------------------------------~~~~~~~~l~~~~~~----~~~~k~lif~~~~~~~~ 286 (406)
....+...+..++.. ....++||||+++..++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~ 403 (555)
T 3tbk_A 324 DALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVD 403 (555)
T ss_dssp HHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHH
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHH
Confidence 012344555555543 35579999999999999
Q ss_pred HHHHHHhcCC------------ceEEEeecCCCHHHHHHHHHHHhc-CCCcEEEEcCcccCCCCCCCCCEEEEecCCCCh
Q 015454 287 WLTEKMRGYN------------FTVSSMHGDMPQKERDAIMGEFRS-GTTRVLITTDVWARGLDVQQVSLVINYDLPNNR 353 (406)
Q Consensus 287 ~l~~~l~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~ 353 (406)
.+++.|...+ .....+||+++..+|..++++|++ |+++|||||+++++|+|+|++++||++++|+|+
T Consensus 404 ~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~ 483 (555)
T 3tbk_A 404 ALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNV 483 (555)
T ss_dssp HHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSC
T ss_pred HHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCH
Confidence 9999998763 344555679999999999999999 999999999999999999999999999999999
Q ss_pred hhhHhhhhhccCCCCceeEEEEeccCcHHHHHHH
Q 015454 354 ELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDI 387 (406)
Q Consensus 354 ~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 387 (406)
..|+||+|| ||. +.|.+++++.+.+......+
T Consensus 484 ~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 484 IKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999 898 88999999998877665555
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3.3e-46 Score=369.30 Aligned_cols=336 Identities=17% Similarity=0.228 Sum_probs=257.7
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcH
Q 015454 34 SFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (406)
Q Consensus 34 ~~~~~~--l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~ 111 (406)
+|++++ +++.+.+.+...||..|+++|.++++.+.+++++++++|||||||+++.++++..+.. +.+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcH
Confidence 477777 8999999999999999999999999999999999999999999999999999887653 45799999999
Q ss_pred HHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC
Q 015454 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (406)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~ 191 (406)
+|+.|+++.++.+. ..++.+....|+...... .....+|+|+||+++...+.+....++++++||+||+|.+.+.+
T Consensus 79 ~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 79 ALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC
Confidence 99999999996554 447888888887665432 12368999999999999888876667889999999999998877
Q ss_pred cHHHHHHHHHhC---CCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccC-----CceEEEEEec----ccccH
Q 015454 192 FKDQIYDVYRYL---PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLE-----GIKQFFVAVE----REEWK 259 (406)
Q Consensus 192 ~~~~~~~~~~~~---~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----~~~~~ 259 (406)
+...+..++..+ .+..|++++|||+++ ...+..++..+. +.......+.. .....+.... .....
T Consensus 155 r~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (702)
T 2p6r_A 155 RGATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEWLDADY-YVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKF 231 (702)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHHTTCEE-EECCCCSSCEEEEEECSSEEEEEETTEEEEEECCH
T ss_pred cccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHHhCCCc-ccCCCCCccceEEEeeCCeeeccCcchhhhhhhhH
Confidence 666665554443 568999999999986 334444544322 11111111100 0000011100 00114
Q ss_pred HHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcC------------------------------CceEEEeecCCCHH
Q 015454 260 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY------------------------------NFTVSSMHGDMPQK 309 (406)
Q Consensus 260 ~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~------------------------------~~~~~~~~~~~~~~ 309 (406)
...+...+. ..+++||||++++.++.+++.|.+. +..+..+||+++.+
T Consensus 232 ~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~ 309 (702)
T 2p6r_A 232 EELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNG 309 (702)
T ss_dssp HHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHH
T ss_pred HHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHH
Confidence 455555554 3478999999999999998888642 13477899999999
Q ss_pred HHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEE----ec---CCCChhhhHhhhhhccCCCC--ceeEEEEeccCc
Q 015454 310 ERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----YD---LPNNRELYIHRIGRSGRFGR--KGVAINFVKNDD 380 (406)
Q Consensus 310 ~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~---~~~s~~~~~Q~~GR~~R~~~--~~~~~~~~~~~~ 380 (406)
+|..+++.|++|.++|||||+++++|+|+|++++||. ++ .|.|..+|.||+||+||.|. .|.|++++.+.+
T Consensus 310 ~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 310 QRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp HHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 9999999999999999999999999999999999998 44 68999999999999999984 688999988876
Q ss_pred H
Q 015454 381 I 381 (406)
Q Consensus 381 ~ 381 (406)
.
T Consensus 390 ~ 390 (702)
T 2p6r_A 390 R 390 (702)
T ss_dssp H
T ss_pred H
Confidence 3
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-45 Score=374.92 Aligned_cols=350 Identities=19% Similarity=0.259 Sum_probs=267.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcH
Q 015454 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (406)
Q Consensus 32 ~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~ 111 (406)
...|...++++.+...+...++..|+++|.++++.+..|++++++||||||||++|.++++..+.. +.+++|++|++
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~Ptr 237 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIK 237 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSH
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcH
Confidence 345666777766666655555668999999999999999999999999999999999999988743 45799999999
Q ss_pred HHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC
Q 015454 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (406)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~ 191 (406)
+|+.|+++.+.+... .+..+.|+... ..+.+|+|+||++|.+.+......+.++++||+||||.+.+.+
T Consensus 238 aLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~ 306 (1108)
T 3l9o_A 238 ALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE 306 (1108)
T ss_dssp HHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHH
T ss_pred HHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccc
Confidence 999999999998764 45667777663 2458999999999999988877778889999999999999888
Q ss_pred cHHHHHHHHHhCCCCceEEEEEecCChH--HHHHHHhcCCCCeEEEecCCccccCCceEEEEEec---------cc----
Q 015454 192 FKDQIYDVYRYLPPDLQVVLISATLPHE--ILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE---------RE---- 256 (406)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---- 256 (406)
++..+..++..+++..|++++|||+++. +..++......+..+...... ......++.... ..
T Consensus 307 rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd~~~~~~ 384 (1108)
T 3l9o_A 307 RGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFR 384 (1108)
T ss_dssp HHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSSCCEEEEETTTEEC
T ss_pred hHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCcceeeeeccccchh
Confidence 8889999999999999999999998764 445666656555544433211 111111111100 00
Q ss_pred -----------------------------------------ccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcC
Q 015454 257 -----------------------------------------EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY 295 (406)
Q Consensus 257 -----------------------------------------~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~ 295 (406)
......+...+......++||||++++.++.++..|...
T Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~ 464 (1108)
T 3l9o_A 385 EENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL 464 (1108)
T ss_dssp HHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSH
T ss_pred hhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhc
Confidence 112233444444455579999999999999999998653
Q ss_pred Cce---------------------------------------EEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCC
Q 015454 296 NFT---------------------------------------VSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 336 (406)
Q Consensus 296 ~~~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 336 (406)
++. +..+||++++.+|..+++.|++|.++|||||+++++|+
T Consensus 465 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GI 544 (1108)
T 3l9o_A 465 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGL 544 (1108)
T ss_dssp HHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCC
T ss_pred cCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCC
Confidence 322 78999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecCC--------CChhhhHhhhhhccCCC--CceeEEEEeccCcHHHHHHHHHHHccccccCC
Q 015454 337 DVQQVSLVINYDLP--------NNRELYIHRIGRSGRFG--RKGVAINFVKNDDIKILRDIEQYYSTQIDEMP 399 (406)
Q Consensus 337 d~~~~~~vi~~~~~--------~s~~~~~Q~~GR~~R~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (406)
|+|++++||.+..+ .|+..|+||+||+||.| ..|.+++++.+.... ..+.+++......+.
T Consensus 545 DiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~--~~~~~l~~~~~~~L~ 615 (1108)
T 3l9o_A 545 NMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP--QVAKGMVKGQADRLD 615 (1108)
T ss_dssp CC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCH--HHHHHHHHCCCCCCC
T ss_pred CCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCH--HHHHHHhcCCCcccc
Confidence 99999999966543 46777999999999999 568888888765322 234444544444443
No 26
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.8e-44 Score=343.13 Aligned_cols=324 Identities=20% Similarity=0.267 Sum_probs=248.3
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEE
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (406)
.|++||.++++.+..+ ++++.+|||+|||++++.++...+. ..+.++||++|+++|+.||.+++.++.......+..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 6999999999999998 9999999999999999999887765 235579999999999999999999987555567778
Q ss_pred EECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEe
Q 015454 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (406)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 214 (406)
+.|+........ ....++|+|+||+.|...+....+...++++||+||||.+.+......+...+....+..+++++||
T Consensus 86 ~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTa 164 (494)
T 1wp9_A 86 LTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (494)
T ss_dssp ECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred eeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEec
Confidence 888776554332 3345899999999999988887778889999999999998765444444444444456788999999
Q ss_pred cCChH---HHHHHHhcCCCCeEEEecCCccc---cCCceEEEEEe-----------------------------------
Q 015454 215 TLPHE---ILEMTTKFMTDPVKILVKRDELT---LEGIKQFFVAV----------------------------------- 253 (406)
Q Consensus 215 T~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----------------------------------- 253 (406)
||... +...+..+............... .......+...
T Consensus 165 Tp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSP 244 (494)
T ss_dssp CSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT
T ss_pred CCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 99732 33333332221111110000000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015454 254 -------------------------------------------------------------------------------- 253 (406)
Q Consensus 254 -------------------------------------------------------------------------------- 253 (406)
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (494)
T 1wp9_A 245 DIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKR 324 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHH
T ss_pred CcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHH
Confidence
Q ss_pred --------------cccccHHHHHHHHHhh----cCCcceEEEecchhhHHHHHHHHhcCCceEEEeec--------CCC
Q 015454 254 --------------EREEWKFDTLCDLYDT----LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHG--------DMP 307 (406)
Q Consensus 254 --------------~~~~~~~~~l~~~~~~----~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~--------~~~ 307 (406)
.....+...+..++.. ....++||||++++.++.+++.|...++.+..+|| +++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~ 404 (494)
T 1wp9_A 325 MKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLS 404 (494)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCC
Confidence 0122345556666655 45679999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHH
Q 015454 308 QKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKI 383 (406)
Q Consensus 308 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~ 383 (406)
..+|..++++|++|+.+|||+|+++++|+|+|++++||++++|+++..|.||+||+||.|+ |.++.++.+.+.+.
T Consensus 405 ~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 405 QREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 99999998876544
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.2e-44 Score=360.57 Aligned_cols=331 Identities=18% Similarity=0.230 Sum_probs=209.0
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCC--ceeEEEEcCcHHHHHHHHHHHHHhccCc
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFI 128 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~~ 128 (406)
.|+..|+++|.++++.++.|+++++++|||+|||++++++++..+..... +.++||++|+++|+.|+.+.+.++....
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccC
Confidence 46779999999999999999999999999999999999999988765432 6689999999999999999999998777
Q ss_pred ceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCC-CcCCcceeecchhhHHhccCcHH-HHHHHHHh----
Q 015454 129 NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRGFKD-QIYDVYRY---- 202 (406)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~-~~~~~~~vV~DE~h~~~~~~~~~-~~~~~~~~---- 202 (406)
++.+..++|+............+++|+|+||++|.+.+....+ .+.++++||+||||.+.+.+... .+..+...
T Consensus 324 ~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~ 403 (797)
T 4a2q_A 324 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 403 (797)
T ss_dssp TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTT
T ss_pred CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhcc
Confidence 8999999999877776666777899999999999999887766 68889999999999987764322 22233322
Q ss_pred CCCCceEEEEEecCCh-----------HHHHHHHh------------------cCCCCeEEEecCCccccCC--------
Q 015454 203 LPPDLQVVLISATLPH-----------EILEMTTK------------------FMTDPVKILVKRDELTLEG-------- 245 (406)
Q Consensus 203 ~~~~~~~i~lSAT~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~-------- 245 (406)
..+.++++++|||+.. .+...... +...+..............
T Consensus 404 ~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 483 (797)
T 4a2q_A 404 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 483 (797)
T ss_dssp CCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHH
T ss_pred CCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHH
Confidence 1456889999999952 11111111 1111111100000000000
Q ss_pred ----------------ceEEEEE---------------------------------------------------------
Q 015454 246 ----------------IKQFFVA--------------------------------------------------------- 252 (406)
Q Consensus 246 ----------------~~~~~~~--------------------------------------------------------- 252 (406)
.......
T Consensus 484 ~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 563 (797)
T 4a2q_A 484 MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 563 (797)
T ss_dssp HHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 0000000
Q ss_pred --------------------------------------------ecccccHHHHHHHHHhh----cCCcceEEEecchhh
Q 015454 253 --------------------------------------------VEREEWKFDTLCDLYDT----LTITQAVIFCNTKRK 284 (406)
Q Consensus 253 --------------------------------------------~~~~~~~~~~l~~~~~~----~~~~k~lif~~~~~~ 284 (406)
......+...|..++.. ....++||||+++..
T Consensus 564 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~ 643 (797)
T 4a2q_A 564 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 643 (797)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHH
Confidence 00012244445555543 455799999999999
Q ss_pred HHHHHHHHhcC------------CceEEEeecCCCHHHHHHHHHHHhc-CCCcEEEEcCcccCCCCCCCCCEEEEecCCC
Q 015454 285 VDWLTEKMRGY------------NFTVSSMHGDMPQKERDAIMGEFRS-GTTRVLITTDVWARGLDVQQVSLVINYDLPN 351 (406)
Q Consensus 285 ~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~ 351 (406)
++.+++.|... |.....+||+++..+|..++++|++ |+++|||||+++++|+|+|++++||++++|+
T Consensus 644 ~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~ 723 (797)
T 4a2q_A 644 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG 723 (797)
T ss_dssp HHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESCCS
T ss_pred HHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCC
Confidence 99999999763 5566677899999999999999999 9999999999999999999999999999999
Q ss_pred ChhhhHhhhhhccCCCCceeEEEEeccCcHHH
Q 015454 352 NRELYIHRIGRSGRFGRKGVAINFVKNDDIKI 383 (406)
Q Consensus 352 s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~ 383 (406)
|+..|+||+|| ||. ++|.+++++.+.+...
T Consensus 724 s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 724 NVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp CHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred CHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 99999999999 999 8899999998866543
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-43 Score=357.45 Aligned_cols=329 Identities=20% Similarity=0.318 Sum_probs=257.1
Q ss_pred HCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcc
Q 015454 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (406)
Q Consensus 50 ~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (406)
..+| .|+++|.++++.+..++++++++|||+|||+++.+++...+.. +.+++|++|+++|+.|+++.+.+...
T Consensus 82 ~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 82 TYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp CCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC---
Confidence 4466 5999999999999999999999999999999999988877643 46899999999999999999988764
Q ss_pred eeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceE
Q 015454 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209 (406)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (406)
.+..+.|+.... ...+|+|+||++|.+.+.+....+.++++||+||+|.+.+.+++..+..++..+++..++
T Consensus 155 -~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~i 226 (1010)
T 2xgj_A 155 -DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRY 226 (1010)
T ss_dssp -CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEE
T ss_pred -CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeE
Confidence 566677776543 347999999999999888877778899999999999999888888888999999999999
Q ss_pred EEEEecCChHH--HHHHHhcCCCCeEEEecCCccccCCceEEEEEec---------cc----------------------
Q 015454 210 VLISATLPHEI--LEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE---------RE---------------------- 256 (406)
Q Consensus 210 i~lSAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---------------------- 256 (406)
+++|||+++.. ..++......+..+...... +....+++.... ..
T Consensus 227 l~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (1010)
T 2xgj_A 227 VFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDD 304 (1010)
T ss_dssp EEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------
T ss_pred EEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccc
Confidence 99999997642 24444333444444332211 112222221100 00
Q ss_pred -----------------------ccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCc----------------
Q 015454 257 -----------------------EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNF---------------- 297 (406)
Q Consensus 257 -----------------------~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~---------------- 297 (406)
......+...+......++||||+++..++.++..|...++
T Consensus 305 ~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~ 384 (1010)
T 2xgj_A 305 PNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNA 384 (1010)
T ss_dssp ------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 11233344444445556899999999999999999876443
Q ss_pred -----------------------eEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEE----ecC-
Q 015454 298 -----------------------TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----YDL- 349 (406)
Q Consensus 298 -----------------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~~- 349 (406)
.+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||. ++.
T Consensus 385 ~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~ 464 (1010)
T 2xgj_A 385 IALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQ 464 (1010)
T ss_dssp HTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSS
T ss_pred HHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCc
Confidence 2788999999999999999999999999999999999999999999998 887
Q ss_pred ---CCChhhhHhhhhhccCCCCc--eeEEEEeccC-cHHHHHHHHHHHccccccC
Q 015454 350 ---PNNRELYIHRIGRSGRFGRK--GVAINFVKND-DIKILRDIEQYYSTQIDEM 398 (406)
Q Consensus 350 ---~~s~~~~~Q~~GR~~R~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 398 (406)
|.++..|.||+||+||.|++ |.+++++.+. +...+. +.+....+.+
T Consensus 465 ~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~---~l~~~~~~~l 516 (1010)
T 2xgj_A 465 QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAK---GMVKGQADRL 516 (1010)
T ss_dssp CEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHH---HHHSCCCCCC
T ss_pred CCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHH---HHHhCCCccc
Confidence 88999999999999999974 9999998865 444443 3344444433
No 29
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.2e-43 Score=356.65 Aligned_cols=330 Identities=18% Similarity=0.236 Sum_probs=207.6
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCC--ceeEEEEcCcHHHHHHHHHHHHHhccCc
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFI 128 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~~ 128 (406)
.++..|+++|.++++.++.|+++++.+|||+|||++++++++..+..... +.++||++|+++|+.|+.+.+.++....
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 35678999999999999999999999999999999999999888765432 5679999999999999999999998777
Q ss_pred ceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCC-CcCCcceeecchhhHHhccCc-HHHHHHHHHh----
Q 015454 129 NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRGF-KDQIYDVYRY---- 202 (406)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~-~~~~~~~vV~DE~h~~~~~~~-~~~~~~~~~~---- 202 (406)
++.+..++|+............+++|+|+||++|.+.+....+ .+.++++||+||||.+.+.+. ...+..+...
T Consensus 324 ~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~ 403 (936)
T 4a2w_A 324 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 403 (936)
T ss_dssp TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTT
T ss_pred CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhcc
Confidence 8899999998876655555556689999999999999887666 678899999999999876642 2222233322
Q ss_pred CCCCceEEEEEecCCh-----------HHHHHHH------------------hcCCCCeEEEecCCccccCC--------
Q 015454 203 LPPDLQVVLISATLPH-----------EILEMTT------------------KFMTDPVKILVKRDELTLEG-------- 245 (406)
Q Consensus 203 ~~~~~~~i~lSAT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~-------- 245 (406)
..+.++++++|||+.. .+..... .+...+..............
T Consensus 404 ~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l 483 (936)
T 4a2w_A 404 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 483 (936)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred CCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHH
Confidence 1456889999999942 1111111 11111211111000000000
Q ss_pred ----------------ceEEEEE---------------------------------------------------------
Q 015454 246 ----------------IKQFFVA--------------------------------------------------------- 252 (406)
Q Consensus 246 ----------------~~~~~~~--------------------------------------------------------- 252 (406)
.......
T Consensus 484 ~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~ 563 (936)
T 4a2w_A 484 MSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 563 (936)
T ss_dssp HHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 0000000
Q ss_pred --------------------------------------------ecccccHHHHHHHHHhh----cCCcceEEEecchhh
Q 015454 253 --------------------------------------------VEREEWKFDTLCDLYDT----LTITQAVIFCNTKRK 284 (406)
Q Consensus 253 --------------------------------------------~~~~~~~~~~l~~~~~~----~~~~k~lif~~~~~~ 284 (406)
......+...+..++.. ....++||||+++..
T Consensus 564 ~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ 643 (936)
T 4a2w_A 564 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 643 (936)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHH
Confidence 00012244445555554 345799999999999
Q ss_pred HHHHHHHHhcC------------CceEEEeecCCCHHHHHHHHHHHhc-CCCcEEEEcCcccCCCCCCCCCEEEEecCCC
Q 015454 285 VDWLTEKMRGY------------NFTVSSMHGDMPQKERDAIMGEFRS-GTTRVLITTDVWARGLDVQQVSLVINYDLPN 351 (406)
Q Consensus 285 ~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~ 351 (406)
++.+.+.|... |.....+||+++..+|..++++|++ |+++|||+|+++++|+|+|++++||++++|+
T Consensus 644 ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~ 723 (936)
T 4a2w_A 644 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG 723 (936)
T ss_dssp HHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESCCS
T ss_pred HHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCC
Confidence 99999999876 5556677899999999999999999 9999999999999999999999999999999
Q ss_pred ChhhhHhhhhhccCCCCceeEEEEeccCcHH
Q 015454 352 NRELYIHRIGRSGRFGRKGVAINFVKNDDIK 382 (406)
Q Consensus 352 s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 382 (406)
|+..|+||+|| ||. ++|.+++++...+.+
T Consensus 724 s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 724 NVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp CSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 99999999999 999 789999998876554
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=9.7e-44 Score=361.65 Aligned_cols=320 Identities=19% Similarity=0.287 Sum_probs=254.2
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|| .|+++|.++++.++.|++++++||||||||++++++++..+ ..+.++||++|+++|+.|+.+.+.+++ ..++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i 149 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLA-DEKV 149 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTS-CTTS
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhh-CCCC
Confidence 577 79999999999999999999999999999998888877766 345679999999999999999999987 7788
Q ss_pred eEEEEECCcch---HHhHHHHhcC-CCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhc-----------cCcHHH
Q 015454 131 QAHACVGGKSV---GEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-----------RGFKDQ 195 (406)
Q Consensus 131 ~~~~~~~~~~~---~~~~~~~~~~-~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~-----------~~~~~~ 195 (406)
.+..++|+.+. ......+..+ ++|+|+||++|.+++.. +...++++||+||||.+.. .++...
T Consensus 150 ~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~ 227 (1104)
T 4ddu_A 150 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEE 227 (1104)
T ss_dssp CEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHH
T ss_pred eEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCHH
Confidence 99999999887 5555666655 99999999999887664 5567899999999987654 556666
Q ss_pred -HHHHHHhCC-----------CCceEEEEEecC-ChHHHH-HHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHH
Q 015454 196 -IYDVYRYLP-----------PDLQVVLISATL-PHEILE-MTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFD 261 (406)
Q Consensus 196 -~~~~~~~~~-----------~~~~~i~lSAT~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (406)
+..+++.++ ...|++++|||+ +..+.. .....+. +..........++.+.+... .+..
T Consensus 228 ~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~----~k~~ 299 (1104)
T 4ddu_A 228 IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS----RSKE 299 (1104)
T ss_dssp HHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC----CCHH
T ss_pred HHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec----CHHH
Confidence 677777665 788999999994 433221 2222222 12222333445555555444 2556
Q ss_pred HHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEE-EeecCCCHHHHHHHHHHHhcCCCcEEEE----cCcccCCC
Q 015454 262 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVS-SMHGDMPQKERDAIMGEFRSGTTRVLIT----TDVWARGL 336 (406)
Q Consensus 262 ~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vli~----t~~~~~G~ 336 (406)
.+..+++... +++||||++++.++.+++.|...|+.+. .+||. |.+ ++.|++|+.+|||| |+++++|+
T Consensus 300 ~L~~ll~~~~-~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGI 372 (1104)
T 4ddu_A 300 KLVELLEIFR-DGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGV 372 (1104)
T ss_dssp HHHHHHHHHC-SSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSC
T ss_pred HHHHHHHhcC-CCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecC
Confidence 6677776644 8999999999999999999999999998 99982 555 99999999999999 99999999
Q ss_pred CCCC-CCEEEEecCCC----------------------------------------------------------------
Q 015454 337 DVQQ-VSLVINYDLPN---------------------------------------------------------------- 351 (406)
Q Consensus 337 d~~~-~~~vi~~~~~~---------------------------------------------------------------- 351 (406)
|+|+ +++||+++.|.
T Consensus 373 Dip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~ 452 (1104)
T 4ddu_A 373 DLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKD 452 (1104)
T ss_dssp CCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEET
T ss_pred cCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecC
Confidence 9999 99999999998
Q ss_pred --------ChhhhHhhhhhccCCCCce--eEEEEeccCcHHHHHHHHHHHc
Q 015454 352 --------NRELYIHRIGRSGRFGRKG--VAINFVKNDDIKILRDIEQYYS 392 (406)
Q Consensus 352 --------s~~~~~Q~~GR~~R~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 392 (406)
++.+|+||.||+||.|..| .++.++..+|.+.++.+.+.++
T Consensus 453 ~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 453 EDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp TTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred CeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7779999999999975432 3444444477888888888775
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=4.4e-44 Score=364.54 Aligned_cols=320 Identities=18% Similarity=0.271 Sum_probs=250.6
Q ss_pred HCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcc
Q 015454 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (406)
Q Consensus 50 ~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (406)
..||. | ++|.++++.++.|+++++++|||||||+ +.++++..+.. .+.+++|++|+++|+.|+.+.+.+++...+
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l~~~~~ 127 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKYAEKAG 127 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 36998 9 9999999999999999999999999998 77777766543 356899999999999999999999988777
Q ss_pred e----eEEEEECCcchHHh---HHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHh
Q 015454 130 I----QAHACVGGKSVGED---IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 202 (406)
Q Consensus 130 ~----~~~~~~~~~~~~~~---~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~ 202 (406)
+ .+..++|+.+...+ ...+.. ++|+|+||++|.+++.+ +.++++||+||||.+.+ +...+..++..
T Consensus 128 i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~~i~~~ 200 (1054)
T 1gku_B 128 VGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVDKLLHL 200 (1054)
T ss_dssp CSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHHHHHHH
T ss_pred CCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHHHHHHH
Confidence 7 88889998877663 233344 89999999999987654 55899999999999987 45677777766
Q ss_pred CC-----------CCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcC
Q 015454 203 LP-----------PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 271 (406)
Q Consensus 203 ~~-----------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 271 (406)
+. ...|++++|||+++. ......++..+..+...........+.+.+. ...+...+..+++..
T Consensus 201 lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~----~~~k~~~L~~ll~~~- 274 (1054)
T 1gku_B 201 LGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV----NDESISTLSSILEKL- 274 (1054)
T ss_dssp TTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE----SCCCTTTTHHHHTTS-
T ss_pred hCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe----chhHHHHHHHHHhhc-
Confidence 63 457889999999875 3211111111112222223333444555444 133555666777765
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEE----cCcccCCCCCCCC-CEEEE
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLIT----TDVWARGLDVQQV-SLVIN 346 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~----t~~~~~G~d~~~~-~~vi~ 346 (406)
.+++||||++++.++.+++.|+.. +.+..+||++ ..+++.|++|+.+|||| |+++++|+|+|++ ++||+
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~ 348 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF 348 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEE
Confidence 378999999999999999999988 9999999997 47789999999999999 8999999999995 99999
Q ss_pred ecCC-----------------------------------------------------------------------CChhh
Q 015454 347 YDLP-----------------------------------------------------------------------NNREL 355 (406)
Q Consensus 347 ~~~~-----------------------------------------------------------------------~s~~~ 355 (406)
++.| .+..+
T Consensus 349 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 428 (1054)
T 1gku_B 349 VGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRT 428 (1054)
T ss_dssp ESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHH
T ss_pred eCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHH
Confidence 9999 78999
Q ss_pred hHhhhhhccCCCCce--eEEEEeccCcHHHHHHHHHHHcc
Q 015454 356 YIHRIGRSGRFGRKG--VAINFVKNDDIKILRDIEQYYST 393 (406)
Q Consensus 356 ~~Q~~GR~~R~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
|+||+||+||.|+.| .++.++..++.+.++.+++.++.
T Consensus 429 yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 429 YIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 999999999987775 48888888888899999888874
No 32
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=6.4e-42 Score=345.62 Aligned_cols=311 Identities=18% Similarity=0.278 Sum_probs=243.2
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.+| .|+++|.++++.+.+|+++++.+|||||||+++++++...+.. +.+++|++|+++|+.|+++.+.+... ++
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~--~~ 109 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFD--DV 109 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC----C
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcC--CC
Confidence 455 6999999999999999999999999999999999888776533 45799999999999999999988643 46
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEE
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i 210 (406)
.+..++|+.... ...+|+|+||++|.+.+......+.++++||+||+|.+.+++++..+..++..+++..+++
T Consensus 110 ~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iI 182 (997)
T 4a4z_A 110 NIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFI 182 (997)
T ss_dssp CEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEE
T ss_pred eEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEE
Confidence 777788876543 3479999999999998888777788999999999999998888888899999999999999
Q ss_pred EEEecCChH--HHHHHHhcCCCCeEEEecCCccccCCceEEE--------------------------------------
Q 015454 211 LISATLPHE--ILEMTTKFMTDPVKILVKRDELTLEGIKQFF-------------------------------------- 250 (406)
Q Consensus 211 ~lSAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 250 (406)
++|||+++. ...++.........+...... .....+++
T Consensus 183 lLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r--~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 260 (997)
T 4a4z_A 183 LLSATVPNTYEFANWIGRTKQKNIYVISTPKR--PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPS 260 (997)
T ss_dssp EEECCCTTHHHHHHHHHHHHTCCEEEEECSSC--SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---------
T ss_pred EEcCCCCChHHHHHHHhcccCCceEEEecCCC--CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccc
Confidence 999998753 222332222122222211110 00011000
Q ss_pred ------------------------------------------------------EEecccccHHHHHHHHHhhcCCcceE
Q 015454 251 ------------------------------------------------------VAVEREEWKFDTLCDLYDTLTITQAV 276 (406)
Q Consensus 251 ------------------------------------------------------~~~~~~~~~~~~l~~~~~~~~~~k~l 276 (406)
............+...+......++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~I 340 (997)
T 4a4z_A 261 KTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMV 340 (997)
T ss_dssp --------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEE
Confidence 00011223455666777777778999
Q ss_pred EEecchhhHHHHHHHHhcCCc---------------------------------------eEEEeecCCCHHHHHHHHHH
Q 015454 277 IFCNTKRKVDWLTEKMRGYNF---------------------------------------TVSSMHGDMPQKERDAIMGE 317 (406)
Q Consensus 277 if~~~~~~~~~l~~~l~~~~~---------------------------------------~~~~~~~~~~~~~r~~~~~~ 317 (406)
|||++++.++.++..|...++ .+..+||++++.+|..+++.
T Consensus 341 VF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~ 420 (997)
T 4a4z_A 341 VFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEIL 420 (997)
T ss_dssp EECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHH
Confidence 999999999999999977655 47899999999999999999
Q ss_pred HhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCC---------ChhhhHhhhhhccCCCC--ceeEEEEec
Q 015454 318 FRSGTTRVLITTDVWARGLDVQQVSLVINYDLPN---------NRELYIHRIGRSGRFGR--KGVAINFVK 377 (406)
Q Consensus 318 f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~---------s~~~~~Q~~GR~~R~~~--~~~~~~~~~ 377 (406)
|.+|.++|||||+++++|+|+|+ ..||+.+.+. +...|.||+||+||.|. .|.+++++.
T Consensus 421 F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 421 FSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 99999999999999999999999 6677666555 99999999999999984 477777773
No 33
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=3e-43 Score=349.60 Aligned_cols=322 Identities=17% Similarity=0.264 Sum_probs=223.1
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC---CCceeEEEEcCcHHHHHHH-HHHHHHhccCcce
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTRELATQT-EKVILAIGDFINI 130 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~---~~~~~~lil~P~~~l~~q~-~~~~~~~~~~~~~ 130 (406)
.|+++|.++++.+++|+++++.+|||+|||+++++++...+... ..+.++||++|+++|+.|+ .+.+.++... ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 79999999999999999999999999999999999998876443 2236799999999999999 9999998754 47
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHH------HccCCCcCCcceeecchhhHHhccC-cHHHHHHHHHh-
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI------KRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRY- 202 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l------~~~~~~~~~~~~vV~DE~h~~~~~~-~~~~~~~~~~~- 202 (406)
.+..+.|+..............+|+|+||++|.+.+ ....+.+..+++||+||||.+.... +...+..+...
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 788888887766655666677999999999999887 4445677889999999999875433 22233222221
Q ss_pred ---C---------CCCceEEEEEecCChH-----------HHHHHHhcCCCCeEEEecC-Ccc--ccCCceEEEEEe---
Q 015454 203 ---L---------PPDLQVVLISATLPHE-----------ILEMTTKFMTDPVKILVKR-DEL--TLEGIKQFFVAV--- 253 (406)
Q Consensus 203 ---~---------~~~~~~i~lSAT~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~--- 253 (406)
. .+.++++++|||+... +......+........... ... ........+...
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~ 245 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT 245 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC--
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccc
Confidence 1 1567899999999862 1111111111000000000 000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015454 254 -------------------------------------------------------------------------------- 253 (406)
Q Consensus 254 -------------------------------------------------------------------------------- 253 (406)
T Consensus 246 ~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (699)
T 4gl2_A 246 REDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTH 325 (699)
T ss_dssp ---CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------cccccHHHHHHHHHhhcC-CcceEE
Q 015454 254 -------------------------------------------------------EREEWKFDTLCDLYDTLT-ITQAVI 277 (406)
Q Consensus 254 -------------------------------------------------------~~~~~~~~~l~~~~~~~~-~~k~li 277 (406)
.......+.+...+...+ .+++||
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IV 405 (699)
T 4gl2_A 326 LETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGII 405 (699)
T ss_dssp HHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEE
T ss_pred HHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 000001122222233223 579999
Q ss_pred EecchhhHHHHHHHHhcC------CceEEEeecC--------CCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCE
Q 015454 278 FCNTKRKVDWLTEKMRGY------NFTVSSMHGD--------MPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSL 343 (406)
Q Consensus 278 f~~~~~~~~~l~~~l~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~ 343 (406)
||++++.++.+++.|... |+.+..+||+ ++..+|..++++|++|+.+|||||+++++|+|+|++++
T Consensus 406 F~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~ 485 (699)
T 4gl2_A 406 FTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNI 485 (699)
T ss_dssp ECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCC
T ss_pred EECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCE
Confidence 999999999999999987 8999999999 99999999999999999999999999999999999999
Q ss_pred EEEecCCCChhhhHhhhhhccCCCCceeEEEEeccC
Q 015454 344 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 344 vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
||++++|+|+..|.||+||+||.| +.++++....
T Consensus 486 VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 486 VIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp CEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred EEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 999999999999999999986655 4444444433
No 34
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.5e-42 Score=335.66 Aligned_cols=326 Identities=19% Similarity=0.241 Sum_probs=238.6
Q ss_pred HHHHHHHHHCCCCCChHHHHHhHHhhhcC------CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHH
Q 015454 42 DDLLRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (406)
Q Consensus 42 ~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~------~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~ 115 (406)
+.+...+...+| .|+++|.++++.+.++ .++++++|||||||++++++++..+.. +.+++|++|+++|+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHH
Confidence 344455567888 8999999999998875 589999999999999999999988754 457999999999999
Q ss_pred HHHHHHHHhccCcceeEEEEECCcchHHhH---HHHhc-CCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC
Q 015454 116 QTEKVILAIGDFINIQAHACVGGKSVGEDI---RKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (406)
Q Consensus 116 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~ 191 (406)
|+++.+.++....++.+..++|+....+.. ..+.. .++|+|+||+.+.+ ...+.++++||+||+|.+....
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q 506 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH
Confidence 999999998887789999999987765533 23333 48999999987753 4567889999999999863222
Q ss_pred cHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhh-c
Q 015454 192 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT-L 270 (406)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 270 (406)
...+......+++++||||+.+......... .....+. .........+...+. ... ....+...+.. .
T Consensus 507 -----r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g-~~~~s~i-~~~p~~r~~i~~~~~---~~~-~~~~l~~~i~~~l 575 (780)
T 1gm5_A 507 -----REALMNKGKMVDTLVMSATPIPRSMALAFYG-DLDVTVI-DEMPPGRKEVQTMLV---PMD-RVNEVYEFVRQEV 575 (780)
T ss_dssp ------CCCCSSSSCCCEEEEESSCCCHHHHHHHTC-CSSCEEE-CCCCSSCCCCEECCC---CSS-THHHHHHHHHHHT
T ss_pred -----HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhC-Ccceeee-eccCCCCcceEEEEe---ccc-hHHHHHHHHHHHH
Confidence 1112222346889999999987655443321 1112222 111111112221111 111 22333333332 2
Q ss_pred -CCcceEEEecchh--------hHHHHHHHHhc---CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCC
Q 015454 271 -TITQAVIFCNTKR--------KVDWLTEKMRG---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDV 338 (406)
Q Consensus 271 -~~~k~lif~~~~~--------~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~ 338 (406)
...+++|||+.++ .++.+++.|.+ .++.+..+||+++..+|..++++|++|+.+|||||+++++|+|+
T Consensus 576 ~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDi 655 (780)
T 1gm5_A 576 MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDV 655 (780)
T ss_dssp TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCC
T ss_pred hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccC
Confidence 3468999999653 46788888887 46789999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCC-ChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHH
Q 015454 339 QQVSLVINYDLPN-NRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDI 387 (406)
Q Consensus 339 ~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 387 (406)
|++++||++++|. +...+.||+||+||.|++|.|++++.+.+....+.+
T Consensus 656 P~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 656 PRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp TTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred CCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHH
Confidence 9999999999985 688899999999999999999999885444443333
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=6.2e-40 Score=335.88 Aligned_cols=323 Identities=17% Similarity=0.195 Sum_probs=246.6
Q ss_pred CCCCHHHHHHHH-HCCCCCChHHHHHhHHhhhc----CC--cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCc
Q 015454 38 MGIKDDLLRGIY-QYGFEKPSAIQQRAVMPIIK----GR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (406)
Q Consensus 38 ~~l~~~i~~~l~-~~~~~~l~~~Q~~~~~~i~~----~~--~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~ 110 (406)
++.++...+.+. .++| .++++|.++++.+++ ++ ++++++|||+|||.+++.+++..... +.+++|++||
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt 661 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPT 661 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSS
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEech
Confidence 455666666664 4566 689999999999886 55 89999999999999998887766543 4589999999
Q ss_pred HHHHHHHHHHHHHhccCcceeEEEEECCcchHHh---HHHHhc-CCCEEEechHHHHHHHHccCCCcCCcceeecchhhH
Q 015454 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGED---IRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (406)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~ 186 (406)
++|+.|+++.+.+.....++.+..+.+.....+. +..+.. ..+|+|+||+.+. ....+.++++||+||+|.
T Consensus 662 ~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~ 736 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHR 736 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGG
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHh
Confidence 9999999999998777777888887776554333 233333 4899999997663 345678899999999998
Q ss_pred HhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHH
Q 015454 187 MLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 266 (406)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (406)
+ .......+..++...++++||||+.+....+....+.+...+ .........+..++....... ....+...
T Consensus 737 ~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i--~~~~~~r~~i~~~~~~~~~~~-i~~~il~~ 808 (1151)
T 2eyq_A 737 F-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII--ATPPARRLAVKTFVREYDSMV-VREAILRE 808 (1151)
T ss_dssp S-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEEC--CCCCCBCBCEEEEEEECCHHH-HHHHHHHH
T ss_pred c-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEE--ecCCCCccccEEEEecCCHHH-HHHHHHHH
Confidence 4 233344455555678999999999887666655544433222 111112223333333322211 22222222
Q ss_pred HhhcCCcceEEEecchhhHHHHHHHHhcC--CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEE
Q 015454 267 YDTLTITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLV 344 (406)
Q Consensus 267 ~~~~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~v 344 (406)
+. .+++++|||++++.++.+++.|++. +..+..+||+++..+|..++++|++|+.+|||||+++++|+|+|++++|
T Consensus 809 l~--~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~V 886 (1151)
T 2eyq_A 809 IL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 886 (1151)
T ss_dssp HT--TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEE
T ss_pred Hh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEE
Confidence 22 3478999999999999999999886 7899999999999999999999999999999999999999999999999
Q ss_pred EEecC-CCChhhhHhhhhhccCCCCceeEEEEeccC
Q 015454 345 INYDL-PNNRELYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 345 i~~~~-~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
|+++. +++...|.||+||+||.|+.|.|++++.+.
T Consensus 887 Ii~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 887 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred EEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99988 578899999999999999999999998764
No 36
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.9e-40 Score=345.60 Aligned_cols=341 Identities=14% Similarity=0.202 Sum_probs=251.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHhHHhhhc-CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHH
Q 015454 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (406)
Q Consensus 40 l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~-~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~ 118 (406)
+.+...+++...+|..++|+|.++++.++. +++++++||||||||+++.++++..+.... +.+++|++|+++|+.|.+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~kavyi~P~raLa~q~~ 989 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EGRCVYITPMEALAEQVY 989 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TCCEEEECSCHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CCEEEEEcChHHHHHHHH
Confidence 445667788878899999999999999976 578999999999999999999998886543 457999999999999999
Q ss_pred HHHHH-hccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccC--CCcCCcceeecchhhHHhccCcHHH
Q 015454 119 KVILA-IGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEMLSRGFKDQ 195 (406)
Q Consensus 119 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~--~~~~~~~~vV~DE~h~~~~~~~~~~ 195 (406)
+.+.+ ++...++.+..+.|+....... ..+++|+|+||+++..++.+.. ..++++++||+||+|.+.+. .+..
T Consensus 990 ~~~~~~f~~~~g~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~ 1065 (1724)
T 4f92_B 990 MDWYEKFQDRLNKKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPV 1065 (1724)
T ss_dssp HHHHHHHTTTSCCCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHH
T ss_pred HHHHHHhchhcCCEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCcc
Confidence 98865 6666788998888876644332 2347999999999977765432 23578999999999988764 3444
Q ss_pred HHHH-------HHhCCCCceEEEEEecCChHHHHHHHhcCC-CCeEEEecCCccccCCceEEEEEecccccH------HH
Q 015454 196 IYDV-------YRYLPPDLQVVLISATLPHEILEMTTKFMT-DPVKILVKRDELTLEGIKQFFVAVEREEWK------FD 261 (406)
Q Consensus 196 ~~~~-------~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 261 (406)
+..+ ....+++.|++++|||+++. ..+..|+. .............+.....+.......... ..
T Consensus 1066 le~il~rl~~i~~~~~~~~riI~lSATl~N~--~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~ 1143 (1724)
T 4f92_B 1066 LEVICSRMRYISSQIERPIRIVALSSSLSNA--KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAK 1143 (1724)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEEESCBTTH--HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHH
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCCCCH--HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcc
Confidence 4333 23456788999999999762 23333332 222222222233333344443333322211 11
Q ss_pred HHHHHHh-hcCCcceEEEecchhhHHHHHHHHhcC----------------------------------CceEEEeecCC
Q 015454 262 TLCDLYD-TLTITQAVIFCNTKRKVDWLTEKMRGY----------------------------------NFTVSSMHGDM 306 (406)
Q Consensus 262 ~l~~~~~-~~~~~k~lif~~~~~~~~~l~~~l~~~----------------------------------~~~~~~~~~~~ 306 (406)
.+...+. ....+++||||++++.++.++..|... ..++..+|+++
T Consensus 1144 ~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL 1223 (1724)
T 4f92_B 1144 PVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGL 1223 (1724)
T ss_dssp HHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTS
T ss_pred hHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCC
Confidence 2222333 334468999999999998877665321 13488999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEE----e------cCCCChhhhHhhhhhccCCCC--ceeEEE
Q 015454 307 PQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----Y------DLPNNRELYIHRIGRSGRFGR--KGVAIN 374 (406)
Q Consensus 307 ~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~------~~~~s~~~~~Q~~GR~~R~~~--~~~~~~ 374 (406)
++.+|..+++.|++|.++|||||++++.|+|+|..++||. + ..|.++.+|.||+||+||.|. .|.+++
T Consensus 1224 ~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avl 1303 (1724)
T 4f92_B 1224 SPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVI 1303 (1724)
T ss_dssp CHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEE
T ss_pred CHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEE
Confidence 9999999999999999999999999999999999888873 2 235789999999999999987 489999
Q ss_pred EeccCcHHHHHHH
Q 015454 375 FVKNDDIKILRDI 387 (406)
Q Consensus 375 ~~~~~~~~~~~~~ 387 (406)
++.+.+.+.++.+
T Consensus 1304 l~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1304 MCQGSKKDFFKKF 1316 (1724)
T ss_dssp EEEGGGHHHHHHH
T ss_pred EecchHHHHHHHH
Confidence 9988777665544
No 37
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=3.2e-41 Score=322.76 Aligned_cols=309 Identities=17% Similarity=0.175 Sum_probs=230.3
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEE
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (406)
.|+++|.++++.+++++++++++|||+|||++++.++...+... +.++||++|+++|+.|+.+.+.++....+..+..
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 79999999999999999999999999999999998888766533 3489999999999999999999987666677778
Q ss_pred EECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEe
Q 015454 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (406)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 214 (406)
+.++...... .....+|+|+||+.+... ....+.++++||+||+|.+.. ..+..++..+++..+++++||
T Consensus 191 ~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSA 260 (510)
T 2oca_A 191 IGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (510)
T ss_dssp CGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEES
T ss_pred EecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEe
Confidence 8777665443 345689999999976542 234567799999999998765 345667777777889999999
Q ss_pred cCChHHHHHH--HhcCCCCeEEEecCC------ccccCCceEEEEEeccc--------------------ccHHHHHHHH
Q 015454 215 TLPHEILEMT--TKFMTDPVKILVKRD------ELTLEGIKQFFVAVERE--------------------EWKFDTLCDL 266 (406)
Q Consensus 215 T~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~ 266 (406)
||++...... ...+. +........ ......+.......+.. ..+...+..+
T Consensus 261 Tp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (510)
T 2oca_A 261 SLRDGKANIMQYVGMFG-EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKL 339 (510)
T ss_dssp CGGGCSSCHHHHHHHHC-SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCcccHHHhHHhhC-CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHH
Confidence 9965422211 11111 111111110 00011111111111100 1123334444
Q ss_pred Hhhc---CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEc-CcccCCCCCCCCC
Q 015454 267 YDTL---TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT-DVWARGLDVQQVS 342 (406)
Q Consensus 267 ~~~~---~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t-~~~~~G~d~~~~~ 342 (406)
+... ...+++||++ .+.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+||||| +++++|+|+|+++
T Consensus 340 l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~ 418 (510)
T 2oca_A 340 AIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLH 418 (510)
T ss_dssp HHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEE
T ss_pred HHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCc
Confidence 4443 3345666666 888999999999988899999999999999999999999999999999 9999999999999
Q ss_pred EEEEecCCCChhhhHhhhhhccCCCCceeEEEEec
Q 015454 343 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK 377 (406)
Q Consensus 343 ~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~ 377 (406)
+||++++|++...|.|++||+||.|+.+..+++++
T Consensus 419 ~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 419 HVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999998874444444
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.2e-40 Score=350.09 Aligned_cols=330 Identities=16% Similarity=0.283 Sum_probs=243.9
Q ss_pred CCCCChHHHHHhHHhhhc-CCcEEEECCCCCChhhHhHHHHHhhhccC--------CCceeEEEEcCcHHHHHHHHHHHH
Q 015454 52 GFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTS--------SREVQALILSPTRELATQTEKVIL 122 (406)
Q Consensus 52 ~~~~l~~~Q~~~~~~i~~-~~~~il~~~tGsGKT~~~~~~i~~~~~~~--------~~~~~~lil~P~~~l~~q~~~~~~ 122 (406)
||..|+++|.++++.++. ++|++++||||||||+++.++++..+... ..+.+++|++|+++|+.|..+.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 788999999999998775 78999999999999999999999887532 346789999999999999999998
Q ss_pred HhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCC--CcCCcceeecchhhHHhccCcHHHHHHHH
Q 015454 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL--RTRAIKLLVLDESDEMLSRGFKDQIYDVY 200 (406)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~--~~~~~~~vV~DE~h~~~~~~~~~~~~~~~ 200 (406)
+.....++.+..++|+....... ..+++|+|+||+++..++.+... .++.+++||+||+|.+.+ ..+..+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 88778889999999987654321 24589999999998666544321 257799999999998765 4444444332
Q ss_pred -------HhCCCCceEEEEEecCChHHHHHHHhcCCCC--eEEEecCCccccCCceEEEEEecccc--cHH----HHHHH
Q 015454 201 -------RYLPPDLQVVLISATLPHEILEMTTKFMTDP--VKILVKRDELTLEGIKQFFVAVEREE--WKF----DTLCD 265 (406)
Q Consensus 201 -------~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~l~~ 265 (406)
...++..|++++|||+++ .+.+..|+... ...........+....+.+....... ... ..+..
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N--~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN--YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT--HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC--HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 334678899999999986 33444555421 11112222222333333333322221 111 12222
Q ss_pred HHhh-cCCcceEEEecchhhHHHHHHHHhcC-------------------------------------CceEEEeecCCC
Q 015454 266 LYDT-LTITQAVIFCNTKRKVDWLTEKMRGY-------------------------------------NFTVSSMHGDMP 307 (406)
Q Consensus 266 ~~~~-~~~~k~lif~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~~~ 307 (406)
.+.. ...+++||||++++.++.+++.|.+. ...+..+||+++
T Consensus 310 ~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~ 389 (1724)
T 4f92_B 310 KIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT 389 (1724)
T ss_dssp HHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC
T ss_pred HHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC
Confidence 2322 23468999999999888887776421 134889999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEE----ec------CCCChhhhHhhhhhccCCCC--ceeEEEE
Q 015454 308 QKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----YD------LPNNRELYIHRIGRSGRFGR--KGVAINF 375 (406)
Q Consensus 308 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~------~~~s~~~~~Q~~GR~~R~~~--~~~~~~~ 375 (406)
+.+|..+++.|++|.++|||||++++.|+|+|..++||. ++ .|.++.+|.||+|||||.|. .|.++++
T Consensus 390 ~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 390 RVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp THHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEE
Confidence 999999999999999999999999999999999998884 33 35689999999999999875 4899999
Q ss_pred eccCcHHHHHHH
Q 015454 376 VKNDDIKILRDI 387 (406)
Q Consensus 376 ~~~~~~~~~~~~ 387 (406)
+.+.+...+..+
T Consensus 470 ~~~~~~~~~~~l 481 (1724)
T 4f92_B 470 TSHGELQYYLSL 481 (1724)
T ss_dssp EESTTCCHHHHH
T ss_pred ecchhHHHHHHH
Confidence 888877665554
No 39
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.8e-39 Score=309.68 Aligned_cols=322 Identities=18% Similarity=0.208 Sum_probs=242.4
Q ss_pred HCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcc
Q 015454 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (406)
Q Consensus 50 ~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (406)
..|+ .|++.|..+++.++.|+ +..++||+|||++|.+|++..... +..++|++||++|+.|.++++..++...+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---GKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 3689 99999999999999998 999999999999999999843332 34699999999999999999999998899
Q ss_pred eeEEEEECCcchHHhHHHHhcCCCEEEechHHH-HHHHHcc------CCCcCCcceeecchhhHHh-ccC----------
Q 015454 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML-SRG---------- 191 (406)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~------~~~~~~~~~vV~DE~h~~~-~~~---------- 191 (406)
+++..+.||.+...+.. ..+++|+|+||+.| .+++..+ ....+.+.++|+||||.++ +..
T Consensus 153 l~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp CCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred CeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 99999999987654433 34689999999999 6666554 2456789999999999987 442
Q ss_pred -----cHHHHHHHHHhCCC---------CceEE-----------------EEEecCChH---HHHHHH--hcCC-CCeEE
Q 015454 192 -----FKDQIYDVYRYLPP---------DLQVV-----------------LISATLPHE---ILEMTT--KFMT-DPVKI 234 (406)
Q Consensus 192 -----~~~~~~~~~~~~~~---------~~~~i-----------------~lSAT~~~~---~~~~~~--~~~~-~~~~~ 234 (406)
+...+..+...+++ ..|++ ++|||.+.. +...+. .++. +...+
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 55677888888863 45665 778886532 221111 1111 11111
Q ss_pred E-------ec----------------------------------------------------------------------
Q 015454 235 L-------VK---------------------------------------------------------------------- 237 (406)
Q Consensus 235 ~-------~~---------------------------------------------------------------------- 237 (406)
. ++
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 0 00
Q ss_pred -----CCccccCCceEEEEEecccccHHHHHHHHHhhc--CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHH
Q 015454 238 -----RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKE 310 (406)
Q Consensus 238 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 310 (406)
+...+................|...+...+... ...++||||+|++.++.+++.|...|+++..+||++...+
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rE 470 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE 470 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHH
Confidence 000000000000011223445777777766542 3458999999999999999999999999999999988777
Q ss_pred HHHHHHHHhcCCCcEEEEcCcccCCCCCC--------CCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcH
Q 015454 311 RDAIMGEFRSGTTRVLITTDVWARGLDVQ--------QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 381 (406)
Q Consensus 311 r~~~~~~f~~~~~~vli~t~~~~~G~d~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 381 (406)
+..+...++.| .|+|||+++++|+|++ ++.+||.++.|.+...|.||+||+||.|.+|.++.|++.+|.
T Consensus 471 r~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 471 AQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 76665555444 6999999999999999 788999999999999999999999999999999999987653
No 40
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=5.5e-40 Score=311.20 Aligned_cols=293 Identities=17% Similarity=0.214 Sum_probs=219.8
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCccee-EE
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ-AH 133 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~-~~ 133 (406)
.|+++|.++++.+..++++++++|||+|||++++.++... +.++||++|+++|+.||.+.+.++ +.. +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcceE
Confidence 6899999999999999999999999999999998887764 457999999999999999999885 355 66
Q ss_pred EEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
.+.++... ..+|+|+||+.+...+..- ..++++||+||+|.+.+..+.. +...+ +..+++++|
T Consensus 163 ~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lS 225 (472)
T 2fwr_A 163 EFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLT 225 (472)
T ss_dssp EBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEE
T ss_pred EECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEe
Confidence 66666542 4789999999988765421 2458999999999998877654 34444 467899999
Q ss_pred ecCCh-------------------HHHHHHHhcCCCCeE--EEecCCcc------------------------ccCCceE
Q 015454 214 ATLPH-------------------EILEMTTKFMTDPVK--ILVKRDEL------------------------TLEGIKQ 248 (406)
Q Consensus 214 AT~~~-------------------~~~~~~~~~~~~~~~--~~~~~~~~------------------------~~~~~~~ 248 (406)
|||.. ........++..+.. +....... .......
T Consensus 226 ATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 305 (472)
T 2fwr_A 226 ATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNK 305 (472)
T ss_dssp SCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTT
T ss_pred cCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHH
Confidence 99962 122221122222111 11100000 0000000
Q ss_pred EEE--------------------EecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCH
Q 015454 249 FFV--------------------AVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ 308 (406)
Q Consensus 249 ~~~--------------------~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 308 (406)
++. .......+...+..++.....+++||||++.+.++.+++.|. +..+||+++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~ 380 (472)
T 2fwr_A 306 IVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSR 380 (472)
T ss_dssp TTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCS
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCH
Confidence 000 001123366778888888777899999999999999999984 5578999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCc-eeE--EEEeccC
Q 015454 309 KERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK-GVA--INFVKND 379 (406)
Q Consensus 309 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~-~~~--~~~~~~~ 379 (406)
.+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|+++..|.|++||+||.|+. +.+ +.++...
T Consensus 381 ~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 381 EEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp HHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred HHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999855 344 4445544
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3e-40 Score=317.98 Aligned_cols=323 Identities=16% Similarity=0.120 Sum_probs=230.0
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHH
Q 015454 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (406)
Q Consensus 38 ~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~ 117 (406)
+++++.+.+++... ...++|.|..+++.+.+++++++.+|||||||++|+++++..+.. .+.++||++|+++|+.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHH
Confidence 44555555544332 356788877789999999999999999999999999999877654 356899999999999999
Q ss_pred HHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHH
Q 015454 118 EKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (406)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~ 197 (406)
.+.+... .+. ..... .. .....+..+.++|.+.+.+.+... ..+.++++||+||||.+ +.++...+.
T Consensus 232 ~~~l~~~------~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~ 298 (618)
T 2whx_A 232 EEALRGL------PIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARG 298 (618)
T ss_dssp HHHTTTS------CEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHH
T ss_pred HHHhcCC------cee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHH
Confidence 9887632 222 11111 00 001123456778888887665544 45788999999999987 444555555
Q ss_pred HHHHhCC-CCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcCCcceE
Q 015454 198 DVYRYLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAV 276 (406)
Q Consensus 198 ~~~~~~~-~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~l 276 (406)
.+...++ +..|++++|||++.....+.. .++..+..... . +.. ....+...+... .+++|
T Consensus 299 ~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-~------------~~~--~~~~ll~~l~~~-~~~~L 359 (618)
T 2whx_A 299 YISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-I------------PER--SWNTGFDWITDY-QGKTV 359 (618)
T ss_dssp HHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-C------------CSS--CCSSSCHHHHHC-CSCEE
T ss_pred HHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-C------------CHH--HHHHHHHHHHhC-CCCEE
Confidence 5555553 578999999999775321111 12222221111 0 000 001111222222 47999
Q ss_pred EEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEE------------
Q 015454 277 IFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLV------------ 344 (406)
Q Consensus 277 if~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~v------------ 344 (406)
|||++++.++.+++.|+..++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 360 VF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~ 434 (618)
T 2whx_A 360 WFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVIL 434 (618)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEE
T ss_pred EEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceec
Confidence 99999999999999999999999999985 688899999999999999999999999997 8888
Q ss_pred --------EEecCCCChhhhHhhhhhccCCCC-ceeEEEEec---cCcHHHHHHHHHHHccccccCCc
Q 015454 345 --------INYDLPNNRELYIHRIGRSGRFGR-KGVAINFVK---NDDIKILRDIEQYYSTQIDEMPM 400 (406)
Q Consensus 345 --------i~~~~~~s~~~~~Q~~GR~~R~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 400 (406)
+.++.|.+..+|+||+||+||.|. +|.+++++. ++|...+..+++.+......++.
T Consensus 435 ~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 435 TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred ccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 666778999999999999999965 899999997 77888888888877655445543
No 42
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.1e-38 Score=314.68 Aligned_cols=336 Identities=16% Similarity=0.227 Sum_probs=242.9
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhc-CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEc
Q 015454 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (406)
Q Consensus 30 ~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~-~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~ 108 (406)
.+...|+++++++.+.+.+...+ ..|.+.|++++..++. +++++++||||||||+.+-..+.........+.++++++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~ 147 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ 147 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecC
Confidence 44667999999999999998877 5789999999887765 567999999999999833322222222222245799999
Q ss_pred CcHHHHHHHHHHHHHhc-cCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhH-
Q 015454 109 PTRELATQTEKVILAIG-DFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE- 186 (406)
Q Consensus 109 P~~~l~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~- 186 (406)
|+++|+.|+.+.+.... ...+..+......... .....+|+++||+++.+.+... ..+.++++||+||+|.
T Consensus 148 P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R 220 (773)
T 2xau_A 148 PRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHER 220 (773)
T ss_dssp SCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGC
T ss_pred chHHHHHHHHHHHHHHhCCchhheecceeccccc------cCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCcccc
Confidence 99999999998775533 2222222221111110 1235789999999999877664 4478899999999996
Q ss_pred HhccC-cHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccH---HHH
Q 015454 187 MLSRG-FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK---FDT 262 (406)
Q Consensus 187 ~~~~~-~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 262 (406)
..+.. ....+..+.... +..+++++|||++.. .+..++.....+...... ..+..++......+.. ...
T Consensus 221 ~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~~ 293 (773)
T 2xau_A 221 TLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAIRT 293 (773)
T ss_dssp CHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH---HHHHHTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhC-CCceEEEEeccccHH---HHHHHhcCCCcccccCcc---cceEEEEecCCchhHHHHHHHH
Confidence 33322 223344444443 578999999999753 333444443333333222 1233333333322222 233
Q ss_pred HHHHHhhcCCcceEEEecchhhHHHHHHHHhc-----------CCceEEEeecCCCHHHHHHHHHHHh-----cCCCcEE
Q 015454 263 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRG-----------YNFTVSSMHGDMPQKERDAIMGEFR-----SGTTRVL 326 (406)
Q Consensus 263 l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~~~~~vl 326 (406)
+..+......+++||||++++.++.+++.|.+ .++.+..+||+++..+|..+++.|. +|..+||
T Consensus 294 l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVl 373 (773)
T 2xau_A 294 VLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVV 373 (773)
T ss_dssp HHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEE
T ss_pred HHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEE
Confidence 44444444568999999999999999999875 5788999999999999999999999 9999999
Q ss_pred EEcCcccCCCCCCCCCEEEEecC------------------CCChhhhHhhhhhccCCCCceeEEEEeccCcH
Q 015454 327 ITTDVWARGLDVQQVSLVINYDL------------------PNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 381 (406)
Q Consensus 327 i~t~~~~~G~d~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 381 (406)
|||+++++|+|+|++++||.++. |.|...|.||+||+||. ++|.|+.++.+.+.
T Consensus 374 VAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 374 ISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999999999877 88999999999999999 78999999986554
No 43
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=3e-40 Score=307.76 Aligned_cols=288 Identities=15% Similarity=0.156 Sum_probs=196.0
Q ss_pred hhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhH
Q 015454 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI 145 (406)
Q Consensus 66 ~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (406)
.+.+|+++++++|||||||++|+++++..+... +.+++|++||++|+.|+++.+..+. +....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~~------v~~~~~~~~----- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGLD------VKFHTQAFS----- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTSC------EEEESSCCC-----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcCC------eEEecccce-----
Confidence 467789999999999999999999998866543 4579999999999999999887542 211111100
Q ss_pred HHHhcCCCEEEechH---------HHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhC-CCCceEEEEEec
Q 015454 146 RKLEHGVHVVSGTPG---------RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISAT 215 (406)
Q Consensus 146 ~~~~~~~~iii~T~~---------~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~lSAT 215 (406)
.++||+ .+...+. ....+.++++||+||+|.+ +..+...+..+.... +..+|+++||||
T Consensus 71 ---------~v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT 139 (440)
T 1yks_A 71 ---------AHGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTAT 139 (440)
T ss_dssp ---------CCCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSS
T ss_pred ---------eccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCC
Confidence 244443 3332222 2344788999999999987 222222222222222 357899999999
Q ss_pred CChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcC
Q 015454 216 LPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY 295 (406)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~ 295 (406)
+++....+... ..+..... ...+... ....+ ..+... .+++||||++++.++.+++.|+..
T Consensus 140 ~~~~~~~~~~~--~~~~~~~~--------------~~~~~~~-~~~~~-~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~ 200 (440)
T 1yks_A 140 PPGTSDEFPHS--NGEIEDVQ--------------TDIPSEP-WNTGH-DWILAD-KRPTAWFLPSIRAANVMAASLRKA 200 (440)
T ss_dssp CTTCCCSSCCC--SSCEEEEE--------------CCCCSSC-CSSSC-HHHHHC-CSCEEEECSCHHHHHHHHHHHHHT
T ss_pred CCchhhhhhhc--CCCeeEee--------------eccChHH-HHHHH-HHHHhc-CCCEEEEeCCHHHHHHHHHHHHHc
Confidence 97753211111 01111100 0011110 11111 122222 479999999999999999999999
Q ss_pred CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEE-------------------ecCCCChhhh
Q 015454 296 NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN-------------------YDLPNNRELY 356 (406)
Q Consensus 296 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~-------------------~~~~~s~~~~ 356 (406)
++.+..+|| ++|..+++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|
T Consensus 201 ~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~ 275 (440)
T 1yks_A 201 GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSA 275 (440)
T ss_dssp TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHH
T ss_pred CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHH
Confidence 999999999 4688999999999999999999999999999 999986 7889999999
Q ss_pred HhhhhhccCC-CCceeEEEEe---ccCcHHHHHHHHHHHccccccCCcc
Q 015454 357 IHRIGRSGRF-GRKGVAINFV---KNDDIKILRDIEQYYSTQIDEMPMN 401 (406)
Q Consensus 357 ~Q~~GR~~R~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (406)
.||+||+||. |++|.|++++ ++.+...+..++..+.....+++..
T Consensus 276 ~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~ 324 (440)
T 1yks_A 276 AQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGG 324 (440)
T ss_dssp HHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGG
T ss_pred HHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccccc
Confidence 9999999998 6889999996 6778788888888776555555543
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.2e-38 Score=298.28 Aligned_cols=287 Identities=17% Similarity=0.150 Sum_probs=207.8
Q ss_pred CCCCChHHHHHhHHhhhcCCcE-EEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 52 GFEKPSAIQQRAVMPIIKGRDV-IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 52 ~~~~l~~~Q~~~~~~i~~~~~~-il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
|+.+++|.|. +++.++++++. ++++|||||||++++++++..+.. .+.+++|++|+++|+.|+.+.+..+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~g~------ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--RRLRTLILAPTRVVAAEMEEALRGL------ 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTTS------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHhcCc------
Confidence 5678899985 79999998876 999999999999999998876544 2467999999999999999987532
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHH-HhCCCCceE
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY-RYLPPDLQV 209 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~-~~~~~~~~~ 209 (406)
.+......... ....+..+.++|++.+.+.+.+. ..+.++++||+||+|.+ +..+......+. ...+++.|+
T Consensus 72 ~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (451)
T 2jlq_A 72 PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAA 144 (451)
T ss_dssp CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceE
Confidence 22211111100 11234578899999998777654 45778999999999976 222222222221 223457899
Q ss_pred EEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHH
Q 015454 210 VLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLT 289 (406)
Q Consensus 210 i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~ 289 (406)
+++|||+++..... ....+..+.... ..+... + . .+...+... .+++||||++++.++.++
T Consensus 145 i~~SAT~~~~~~~~---~~~~~~~~~~~~-~~p~~~---~-------~----~~~~~l~~~-~~~~lVF~~s~~~a~~l~ 205 (451)
T 2jlq_A 145 IFMTATPPGSTDPF---PQSNSPIEDIER-EIPERS---W-------N----TGFDWITDY-QGKTVWFVPSIKAGNDIA 205 (451)
T ss_dssp EEECSSCTTCCCSS---CCCSSCEEEEEC-CCCSSC---C-------S----SSCHHHHHC-CSCEEEECSSHHHHHHHH
T ss_pred EEEccCCCccchhh---hcCCCceEecCc-cCCchh---h-------H----HHHHHHHhC-CCCEEEEcCCHHHHHHHH
Confidence 99999997632221 122222222211 110000 0 0 011223332 469999999999999999
Q ss_pred HHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEec--------------------C
Q 015454 290 EKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYD--------------------L 349 (406)
Q Consensus 290 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~--------------------~ 349 (406)
+.|+..++.+..+|+++. ..+++.|++|+.+|||||+++++|+|+|+ ++||.++ .
T Consensus 206 ~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~ 280 (451)
T 2jlq_A 206 NCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPI 280 (451)
T ss_dssp HHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEE
T ss_pred HHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccc
Confidence 999999999999999753 57899999999999999999999999999 9999988 8
Q ss_pred CCChhhhHhhhhhccCCCC-ceeEEEEecc
Q 015454 350 PNNRELYIHRIGRSGRFGR-KGVAINFVKN 378 (406)
Q Consensus 350 ~~s~~~~~Q~~GR~~R~~~-~~~~~~~~~~ 378 (406)
|.+..+|.||+||+||.|+ .|.++++...
T Consensus 281 p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 281 PVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 9999999999999999998 7888888754
No 45
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.7e-37 Score=297.36 Aligned_cols=321 Identities=17% Similarity=0.191 Sum_probs=223.4
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|. .|++.|..+++.++.|+ +..++||+|||++|.+|++..... +..++|++||++|+.|.++++..++...++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~~~lgl 144 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEFLGL 144 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 465 89999999999999987 999999999999999999854433 446999999999999999999999998999
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHH-HHHHHccC------CCcCCcceeecchhhHHh-ccC-----------
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT------LRTRAIKLLVLDESDEML-SRG----------- 191 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~~------~~~~~~~~vV~DE~h~~~-~~~----------- 191 (406)
++..+.||.+...+ ....+++|+|+||+.| .+++..+. ...+.+.++|+||+|.++ +.+
T Consensus 145 ~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 145 TVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp CEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred eEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 99999999875433 3344689999999999 67777653 456889999999999988 332
Q ss_pred ----cHHHHHHHHHhCCC--------------------CceEE------------------------EEEecCChH---H
Q 015454 192 ----FKDQIYDVYRYLPP--------------------DLQVV------------------------LISATLPHE---I 220 (406)
Q Consensus 192 ----~~~~~~~~~~~~~~--------------------~~~~i------------------------~lSAT~~~~---~ 220 (406)
+...+..++..+++ ..|+. ++|||.++. +
T Consensus 223 ~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i 302 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHV 302 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHH
Confidence 34455666666653 23332 678875431 1
Q ss_pred HHHHH--hcCC--------C-----------------------------CeEEEecCCccccCCce--------------
Q 015454 221 LEMTT--KFMT--------D-----------------------------PVKILVKRDELTLEGIK-------------- 247 (406)
Q Consensus 221 ~~~~~--~~~~--------~-----------------------------~~~~~~~~~~~~~~~~~-------------- 247 (406)
...+. .++. + +..+.+.........+.
T Consensus 303 ~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~Gm 382 (853)
T 2fsf_A 303 TAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGM 382 (853)
T ss_dssp ------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcC
Confidence 10000 0000 0 00111111111111000
Q ss_pred --------------------------------EEEEEecccccHHHHHHHHHhh-c-CCcceEEEecchhhHHHHHHHHh
Q 015454 248 --------------------------------QFFVAVEREEWKFDTLCDLYDT-L-TITQAVIFCNTKRKVDWLTEKMR 293 (406)
Q Consensus 248 --------------------------------~~~~~~~~~~~~~~~l~~~~~~-~-~~~k~lif~~~~~~~~~l~~~l~ 293 (406)
+..........|...+...+.. + ...++||||+|++.++.+++.|.
T Consensus 383 TGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~ 462 (853)
T 2fsf_A 383 TGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELT 462 (853)
T ss_dssp ECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 0001122344577777777754 2 34589999999999999999999
Q ss_pred cCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCC--------------------------------
Q 015454 294 GYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQV-------------------------------- 341 (406)
Q Consensus 294 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~-------------------------------- 341 (406)
..|+++..+||+....++..+.+.|+.| .|+|||+++++|+|++..
T Consensus 463 ~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 540 (853)
T 2fsf_A 463 KAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAV 540 (853)
T ss_dssp HTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHH
Confidence 9999999999998888887788888877 699999999999999864
Q ss_pred -----CEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcH
Q 015454 342 -----SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 381 (406)
Q Consensus 342 -----~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 381 (406)
.+||.++.|.|...|.|+.||+||.|.+|.++.|++.+|.
T Consensus 541 ~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 541 LEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999987663
No 46
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.3e-38 Score=308.43 Aligned_cols=306 Identities=17% Similarity=0.154 Sum_probs=212.0
Q ss_pred CChHHHH-----HhHHhhh------cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015454 55 KPSAIQQ-----RAVMPII------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (406)
Q Consensus 55 ~l~~~Q~-----~~~~~i~------~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (406)
.|++.|. ++++.++ +++++++++|||||||++|+++++..+... +.+++|++|+++|+.|+++.+..
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccHHHHHHHHHHHHhc
Confidence 7899999 9999888 899999999999999999999998776543 46799999999999999998875
Q ss_pred hccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhC
Q 015454 124 IGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (406)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~ 203 (406)
+. +. ...+.... ....+.-+-+.+...+.+.+... ..+.++++||+||+|.+ +..+...+..+....
T Consensus 293 ~~----i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~ 359 (673)
T 2wv9_A 293 LP----VR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGYIATRV 359 (673)
T ss_dssp SC----CE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHH
T ss_pred CC----ee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHHHHHhc
Confidence 42 11 10000000 00111234445555565544443 56788999999999987 211112222222222
Q ss_pred -CCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecch
Q 015454 204 -PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 282 (406)
Q Consensus 204 -~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~ 282 (406)
+...|+++||||+++....+... ..+..... ...+.. .....+. .+.. ..+++||||+++
T Consensus 360 ~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~--------------~~~~~~-~~~~~l~-~l~~-~~~~~lVF~~s~ 420 (673)
T 2wv9_A 360 EAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVS--------------SEIPDR-AWSSGFE-WITD-YAGKTVWFVASV 420 (673)
T ss_dssp HTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEE--------------CCCCSS-CCSSCCH-HHHS-CCSCEEEECSSH
T ss_pred cccCCcEEEEcCCCChhhhhhccc--CCceEEEe--------------eecCHH-HHHHHHH-HHHh-CCCCEEEEECCH
Confidence 25789999999998642211110 01111100 000100 0111112 2222 357999999999
Q ss_pred hhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEE----------------
Q 015454 283 RKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN---------------- 346 (406)
Q Consensus 283 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~---------------- 346 (406)
+.++.+++.|+..++.+..+||+ +|..+++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 421 ~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r 495 (673)
T 2wv9_A 421 KMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGR 495 (673)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCE
T ss_pred HHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeeccccc
Confidence 99999999999999999999994 789999999999999999999999999999 999997
Q ss_pred ----ecCCCChhhhHhhhhhccCC-CCceeEEEEe---ccCcHHHHHHHHHHHccccccCC
Q 015454 347 ----YDLPNNRELYIHRIGRSGRF-GRKGVAINFV---KNDDIKILRDIEQYYSTQIDEMP 399 (406)
Q Consensus 347 ----~~~~~s~~~~~Q~~GR~~R~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 399 (406)
++.|.+..+|.||+||+||. |+.|.+++|+ ++.+...+..++..+.....+.+
T Consensus 496 ~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~ 556 (673)
T 2wv9_A 496 VILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLP 556 (673)
T ss_dssp EEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCBT
T ss_pred ceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhccCC
Confidence 45788999999999999999 7889999996 56677777777776644333333
No 47
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=5e-36 Score=287.67 Aligned_cols=321 Identities=18% Similarity=0.212 Sum_probs=244.2
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|+ +|++.|..+++.+..|+ +..++||+|||++|.+|++..... +..++|++|++.|+.|.++++..+....++
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---g~~v~VvTpTreLA~Qdae~m~~l~~~lGL 181 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---GNGVHIVTVNDYLAKRDSEWMGRVHRFLGL 181 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---TSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 588 89999999999999987 999999999999999999643333 346999999999999999999999999999
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHH-HHHHHcc------CCCcCCcceeecchhhHHhc-c------------
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEMLS-R------------ 190 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~------~~~~~~~~~vV~DE~h~~~~-~------------ 190 (406)
++..+.||.+...+.. ..+++|+++||+.| .+++..+ ....+.+.++|+||||.++. .
T Consensus 182 sv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~ 259 (922)
T 1nkt_A 182 QVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPAD 259 (922)
T ss_dssp CEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECC
T ss_pred eEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCC
Confidence 9999999887544333 34589999999999 6777664 24567899999999999983 2
Q ss_pred ---CcHHHHHHHHHhCC---------CCceEE-----------------EEEecCChH---HHHHHHh--cCC-CC----
Q 015454 191 ---GFKDQIYDVYRYLP---------PDLQVV-----------------LISATLPHE---ILEMTTK--FMT-DP---- 231 (406)
Q Consensus 191 ---~~~~~~~~~~~~~~---------~~~~~i-----------------~lSAT~~~~---~~~~~~~--~~~-~~---- 231 (406)
++...+..+...++ +..|+. ++|||.++. +...+.. ++. +.
T Consensus 260 ~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV 339 (922)
T 1nkt_A 260 GASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIV 339 (922)
T ss_dssp CCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEE
T ss_pred cchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceee
Confidence 35678888888887 567777 788987542 2221111 111 11
Q ss_pred ---eEEEecC-----------------------------CccccC-----------------------------------
Q 015454 232 ---VKILVKR-----------------------------DELTLE----------------------------------- 244 (406)
Q Consensus 232 ---~~~~~~~-----------------------------~~~~~~----------------------------------- 244 (406)
..+.++. +.....
T Consensus 340 ~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 419 (922)
T 1nkt_A 340 RDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLG 419 (922)
T ss_dssp CSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCE
T ss_pred ecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCC
Confidence 1111110 000000
Q ss_pred -----------CceEEEEEecccccHHHHHHHHHhhc--CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHH
Q 015454 245 -----------GIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKER 311 (406)
Q Consensus 245 -----------~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r 311 (406)
..............|...+...+... ...++||||+|++.++.+++.|...|+++..+||+....++
T Consensus 420 vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa 499 (922)
T 1nkt_A 420 VVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEA 499 (922)
T ss_dssp EEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHH
T ss_pred eEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHH
Confidence 00000011223344777777766542 34589999999999999999999999999999999877777
Q ss_pred HHHHHHHhcCCCcEEEEcCcccCCCCCCCC--------------------------------------------------
Q 015454 312 DAIMGEFRSGTTRVLITTDVWARGLDVQQV-------------------------------------------------- 341 (406)
Q Consensus 312 ~~~~~~f~~~~~~vli~t~~~~~G~d~~~~-------------------------------------------------- 341 (406)
..+.+.|+.| .|+|||+++++|+|++..
T Consensus 500 ~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 577 (922)
T 1nkt_A 500 TIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEA 577 (922)
T ss_dssp HHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhc
Confidence 7777777766 699999999999999965
Q ss_pred --CEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcH
Q 015454 342 --SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 381 (406)
Q Consensus 342 --~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 381 (406)
.+||.++.|.|...|.|+.||+||.|.+|.+..|++.+|.
T Consensus 578 GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 578 GGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp TSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred CCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999987764
No 48
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=6.8e-38 Score=304.47 Aligned_cols=309 Identities=18% Similarity=0.259 Sum_probs=190.8
Q ss_pred CChHHHHHhHHhhhc----C-CcEEEECCCCCChhhHhHHHHHhhhccC------CCceeEEEEcCcHHHHHHHH-HHHH
Q 015454 55 KPSAIQQRAVMPIIK----G-RDVIAQAQSGTGKTSMIALTVCQTVDTS------SREVQALILSPTRELATQTE-KVIL 122 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~----~-~~~il~~~tGsGKT~~~~~~i~~~~~~~------~~~~~~lil~P~~~l~~q~~-~~~~ 122 (406)
.|+++|.++++.+.+ + +++++++|||+|||++++..+...+... ..+.++||++|+++|+.|+. +.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999998876 4 5689999999999999766554444322 15678999999999999999 7776
Q ss_pred HhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc----cCCCcCCcceeecchhhHHhccCcHHHHHH
Q 015454 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR----KTLRTRAIKLLVLDESDEMLSRGFKDQIYD 198 (406)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~----~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~ 198 (406)
.++.. ...+.++ ....+.+|+|+||++|...... ..+....+++||+||||++.... ...+..
T Consensus 258 ~~~~~----~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~ 324 (590)
T 3h1t_A 258 PFGDA----RHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWRE 324 (590)
T ss_dssp TTCSS----EEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHH
T ss_pred hcchh----hhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHH
Confidence 65532 2222221 1234579999999999876542 23445678999999999987542 234455
Q ss_pred HHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccc---cCCceEEEEE-----------------------
Q 015454 199 VYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELT---LEGIKQFFVA----------------------- 252 (406)
Q Consensus 199 ~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----------------------- 252 (406)
++..++ ..+++++||||..........++..+........... ..........
T Consensus 325 il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 666664 4679999999875333333333333322211000000 0000000000
Q ss_pred -----eccc----------ccHHHHHHHHHhhc-CCcceEEEecchhhHHHHHHHHhcCCc--------eEEEeecCCCH
Q 015454 253 -----VERE----------EWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMRGYNF--------TVSSMHGDMPQ 308 (406)
Q Consensus 253 -----~~~~----------~~~~~~l~~~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~--------~~~~~~~~~~~ 308 (406)
.... ......+...++.. ..+++||||+++++++.+++.|.+.+. .+..+||.++.
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~ 483 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK 483 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH
Confidence 0000 00112233334433 346999999999999999999976543 27788888753
Q ss_pred HHHHHHHHHHhcCCCc---EEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCC--ceeEEEEecc
Q 015454 309 KERDAIMGEFRSGTTR---VLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR--KGVAINFVKN 378 (406)
Q Consensus 309 ~~r~~~~~~f~~~~~~---vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~--~~~~~~~~~~ 378 (406)
+|..++++|++|+.+ ||++|+++++|+|+|++++||++++++|...|.||+||++|.+. .+..+++++.
T Consensus 484 -~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~ 557 (590)
T 3h1t_A 484 -IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDY 557 (590)
T ss_dssp -HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEEC
T ss_pred -HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEec
Confidence 799999999998765 88889999999999999999999999999999999999999875 3333344443
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.3e-38 Score=301.84 Aligned_cols=292 Identities=19% Similarity=0.246 Sum_probs=213.4
Q ss_pred ChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEE
Q 015454 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (406)
Q Consensus 56 l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (406)
++++|.++++.+..+++++++||||||||.++.++++.. +.+++|++|+++|+.|+++.+.+.. +..+...
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~ 288 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNIR 288 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEEE
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeEE
Confidence 566777777777788999999999999999999887752 4579999999999999998876543 2334445
Q ss_pred ECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCce--EEEEE
Q 015454 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ--VVLIS 213 (406)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~--~i~lS 213 (406)
.++.. ...+.+|+|+||++| +.+..+...++++||+||+|.+ +.++...+..+.+.++...+ ++++|
T Consensus 289 vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~llil~S 357 (666)
T 3o8b_A 289 TGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGARLVVLAT 357 (666)
T ss_dssp CSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred ECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCceEEEEC
Confidence 55543 245689999999998 3556677888999999999865 44566667778888776555 78889
Q ss_pred ecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHh
Q 015454 214 ATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR 293 (406)
Q Consensus 214 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~ 293 (406)
||+++... ...+........ ......++ .... . +.....+++||||++++.++.+++.|+
T Consensus 358 AT~~~~i~------~~~p~i~~v~~~---~~~~i~~~---~~~~-~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~ 417 (666)
T 3o8b_A 358 ATPPGSVT------VPHPNIEEVALS---NTGEIPFY---GKAI-P-------IEAIRGGRHLIFCHSKKKCDELAAKLS 417 (666)
T ss_dssp SSCTTCCC------CCCTTEEEEECB---SCSSEEET---TEEE-C-------GGGSSSSEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCcccc------cCCcceEEEeec---ccchhHHH---Hhhh-h-------hhhccCCcEEEEeCCHHHHHHHHHHHH
Confidence 99987311 111111111000 00111110 0000 0 223355799999999999999999999
Q ss_pred cCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEE----------ec-----------CCCC
Q 015454 294 GYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----------YD-----------LPNN 352 (406)
Q Consensus 294 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----------~~-----------~~~s 352 (406)
+.++.+..+||++++.+ |.++..+|||||+++++|+|+| +++||+ ++ .|.+
T Consensus 418 ~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s 489 (666)
T 3o8b_A 418 GLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQD 489 (666)
T ss_dssp TTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECB
T ss_pred hCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCC
Confidence 99999999999999875 4556679999999999999997 999995 44 7899
Q ss_pred hhhhHhhhhhccCCCCceeEEEEeccCcHHH--H--HHHHHHHcccccc
Q 015454 353 RELYIHRIGRSGRFGRKGVAINFVKNDDIKI--L--RDIEQYYSTQIDE 397 (406)
Q Consensus 353 ~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~ 397 (406)
..+|+||+||+|| |++|. +.|+.+.+... + ..+++.++....+
T Consensus 490 ~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~ 536 (666)
T 3o8b_A 490 AVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAW 536 (666)
T ss_dssp HHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCccc
Confidence 9999999999999 89999 88888765544 2 4555554444433
No 50
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=5.7e-36 Score=257.83 Aligned_cols=217 Identities=29% Similarity=0.459 Sum_probs=197.0
Q ss_pred eeccCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC----
Q 015454 23 FETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---- 98 (406)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~---- 98 (406)
......+++..+|+++++++.+.+++...||..|+++|.++++.++.|+++++++|||+|||++|+++++..+...
T Consensus 19 ~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~ 98 (242)
T 3fe2_A 19 VRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 98 (242)
T ss_dssp EESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCC
T ss_pred EeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccc
Confidence 3445567788999999999999999999999999999999999999999999999999999999999999877532
Q ss_pred -CCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcc
Q 015454 99 -SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (406)
Q Consensus 99 -~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~ 177 (406)
..+.+++|++|+++|+.|+.+.+.++....++.+..+.|+.........+..+++|+|+||++|.+.+......+.+++
T Consensus 99 ~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 178 (242)
T 3fe2_A 99 RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTT 178 (242)
T ss_dssp TTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCC
T ss_pred cCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCccccc
Confidence 3467899999999999999999999988888899999999988888888888899999999999999988888889999
Q ss_pred eeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCC
Q 015454 178 LLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 239 (406)
Q Consensus 178 ~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~ 239 (406)
++|+||||.+.+.++...+..+.+.+++..|++++|||+++........++.++..+.....
T Consensus 179 ~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 179 YLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp EEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999988876544
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.3e-36 Score=282.77 Aligned_cols=269 Identities=13% Similarity=0.106 Sum_probs=186.5
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (406)
+|+++++++|||||||++|+++++..+... +.+++|++|+++|+.|+.+.+. +..+....++... ..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-----ER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----cC
Confidence 368899999999999999988888554432 4579999999999999998775 2333333332111 11
Q ss_pred hcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHh-CCCCceEEEEEecCChHHHHHHHhc
Q 015454 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY-LPPDLQVVLISATLPHEILEMTTKF 227 (406)
Q Consensus 149 ~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~lSAT~~~~~~~~~~~~ 227 (406)
..+..+.+.|.+.+.+.+.. ...+.++++||+||+|.+ +..+......+... .++.++++++|||+++....+...
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~- 144 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPS- 144 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCC-
T ss_pred CCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCC-
Confidence 12355677888888766655 455788999999999987 32222233333322 246789999999998732111000
Q ss_pred CCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCC
Q 015454 228 MTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMP 307 (406)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 307 (406)
..+..... ...+. .....+..++... .++++|||++++.++.+++.|+..++.+..+||+
T Consensus 145 -~~~i~~~~--------------~~~~~--~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~-- 204 (431)
T 2v6i_A 145 -NSPIIDEE--------------TRIPD--KAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK-- 204 (431)
T ss_dssp -SSCCEEEE--------------CCCCS--SCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT--
T ss_pred -CCceeecc--------------ccCCH--HHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc--
Confidence 01111000 00000 0111122333333 4689999999999999999999999999999997
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCE-----------------EEEecCCCChhhhHhhhhhccCCCCce
Q 015454 308 QKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSL-----------------VINYDLPNNRELYIHRIGRSGRFGRKG 370 (406)
Q Consensus 308 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~-----------------vi~~~~~~s~~~~~Q~~GR~~R~~~~~ 370 (406)
+|..+++.|++|+.+|||||+++++|+|+| +.+ ++.++.|.+..+|.||+||+||.|+.+
T Consensus 205 --~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 281 (431)
T 2v6i_A 205 --TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKL 281 (431)
T ss_dssp --THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred --cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCC
Confidence 578899999999999999999999999999 655 567788899999999999999998654
Q ss_pred -eEEEEe
Q 015454 371 -VAINFV 376 (406)
Q Consensus 371 -~~~~~~ 376 (406)
.++++.
T Consensus 282 ~~~~~~~ 288 (431)
T 2v6i_A 282 GDIYAYS 288 (431)
T ss_dssp CCEEEEC
T ss_pred CeEEEEc
Confidence 445554
No 52
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.2e-37 Score=290.24 Aligned_cols=275 Identities=17% Similarity=0.186 Sum_probs=191.7
Q ss_pred HhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcch
Q 015454 62 RAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSV 141 (406)
Q Consensus 62 ~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (406)
..-..+.+++++++++|||||||++|+++++..+... +.+++|++|+++|+.|+.+.+..+ .+....+....
T Consensus 13 ~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~~~~~~~ 84 (459)
T 2z83_A 13 GSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALRGL------PVRYQTSAVQR 84 (459)
T ss_dssp --CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTTTS------CEEECC-----
T ss_pred HHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhcCc------eEeEEeccccc
Confidence 3344566688999999999999999999998776532 467999999999999999988622 22111111000
Q ss_pred HHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHH-----hccCcHHHHHHHHHhCCCCceEEEEEecC
Q 015454 142 GEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM-----LSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (406)
Q Consensus 142 ~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~-----~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 216 (406)
....+..+.++|.+.+...+... ..+.++++||+||||.. ...++.. ... .++..|++++|||+
T Consensus 85 -----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~---~~~--~~~~~~~il~SAT~ 153 (459)
T 2z83_A 85 -----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIA---TKV--ELGEAAAIFMTATP 153 (459)
T ss_dssp --------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHH---HHH--HTTSCEEEEECSSC
T ss_pred -----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHH---HHh--ccCCccEEEEEcCC
Confidence 01233457788888887666554 45778999999999973 2222211 111 13578999999999
Q ss_pred ChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCC
Q 015454 217 PHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYN 296 (406)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~ 296 (406)
+......... ..+..... ..... ....... .++... .+++||||++++.++.+++.|+..+
T Consensus 154 ~~~~~~~~~~--~~pi~~~~--~~~~~----------~~~~~~~----~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g 214 (459)
T 2z83_A 154 PGTTDPFPDS--NAPIHDLQ--DEIPD----------RAWSSGY----EWITEY-AGKTVWFVASVKMGNEIAMCLQRAG 214 (459)
T ss_dssp TTCCCSSCCC--SSCEEEEE--CCCCS----------SCCSSCC----HHHHHC-CSCEEEECSCHHHHHHHHHHHHHTT
T ss_pred CcchhhhccC--CCCeEEec--ccCCc----------chhHHHH----HHHHhc-CCCEEEEeCChHHHHHHHHHHHhcC
Confidence 8642211110 11221111 00000 0001111 223333 4799999999999999999999999
Q ss_pred ceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEE--------------------ecCCCChhhh
Q 015454 297 FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN--------------------YDLPNNRELY 356 (406)
Q Consensus 297 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~--------------------~~~~~s~~~~ 356 (406)
+.+..+|++ +|..+++.|++|+.+|||||+++++|+|+|+ ++||. ++.|.+..+|
T Consensus 215 ~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~ 289 (459)
T 2z83_A 215 KKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASA 289 (459)
T ss_dssp CCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHH
T ss_pred CcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHH
Confidence 999999995 6778899999999999999999999999999 99998 5689999999
Q ss_pred HhhhhhccCCCC-ceeEEEEeccC
Q 015454 357 IHRIGRSGRFGR-KGVAINFVKND 379 (406)
Q Consensus 357 ~Q~~GR~~R~~~-~~~~~~~~~~~ 379 (406)
.||+||+||.|+ +|.+++++.+.
T Consensus 290 ~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 290 AQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHhccccCCCCCCCCeEEEEEccc
Confidence 999999999997 89999998875
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=9.1e-37 Score=308.76 Aligned_cols=332 Identities=17% Similarity=0.166 Sum_probs=226.4
Q ss_pred CChHHHHHhHHhhhcC--CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeE
Q 015454 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~--~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (406)
.|+|||.+++..++.. .++++.++||+|||++++..+...+..+ ...++||+||+ +|+.||..++.+.. ++.+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~v 227 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAERVLIIVPE-TLQHQWLVEMLRRF---NLRF 227 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEECCT-TTHHHHHHHHHHHS---CCCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEeCH-HHHHHHHHHHHHHh---CCCE
Confidence 7999999999988764 5799999999999999888776665443 34569999999 99999999996654 3444
Q ss_pred EEEECCcchHHhHH--HHhcCCCEEEechHHHHHHHHc-cCCCcCCcceeecchhhHHhccCcH--HHHHHHHHhCCCCc
Q 015454 133 HACVGGKSVGEDIR--KLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFK--DQIYDVYRYLPPDL 207 (406)
Q Consensus 133 ~~~~~~~~~~~~~~--~~~~~~~iii~T~~~l~~~l~~-~~~~~~~~~~vV~DE~h~~~~~~~~--~~~~~~~~~~~~~~ 207 (406)
..+.++........ ......+|+|+|++.+.+.... ..+....+++||+||||++.+.... .....+.......+
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~ 307 (968)
T 3dmq_A 228 ALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVP 307 (968)
T ss_dssp EECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCS
T ss_pred EEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCC
Confidence 44433322111100 1123468999999988642111 1123456899999999999765422 11222222222455
Q ss_pred eEEEEEecCCh----HHHHH----------------------------HHhcCCC-------------------------
Q 015454 208 QVVLISATLPH----EILEM----------------------------TTKFMTD------------------------- 230 (406)
Q Consensus 208 ~~i~lSAT~~~----~~~~~----------------------------~~~~~~~------------------------- 230 (406)
+++++||||.+ ++... .......
T Consensus 308 ~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~ 387 (968)
T 3dmq_A 308 GVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQ 387 (968)
T ss_dssp SEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGG
T ss_pred cEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHh
Confidence 69999999842 00000 0000000
Q ss_pred ---------------------------CeEEEecC---CccccCCceEEEE-----------------------------
Q 015454 231 ---------------------------PVKILVKR---DELTLEGIKQFFV----------------------------- 251 (406)
Q Consensus 231 ---------------------------~~~~~~~~---~~~~~~~~~~~~~----------------------------- 251 (406)
...+.... ...+.........
T Consensus 388 ~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (968)
T 3dmq_A 388 AANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDM 467 (968)
T ss_dssp GTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhh
Confidence 00000000 0000000000000
Q ss_pred ---------------EecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhc-CCceEEEeecCCCHHHHHHHH
Q 015454 252 ---------------AVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRG-YNFTVSSMHGDMPQKERDAIM 315 (406)
Q Consensus 252 ---------------~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~ 315 (406)
.......+...+..++.....+++||||+++..++.+++.|.. .|+.+..+||+++..+|..++
T Consensus 468 l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l 547 (968)
T 3dmq_A 468 LYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAA 547 (968)
T ss_dssp HCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHH
T ss_pred cChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH
Confidence 0112234678888888887778999999999999999999994 699999999999999999999
Q ss_pred HHHhcCC--CcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHH
Q 015454 316 GEFRSGT--TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYY 391 (406)
Q Consensus 316 ~~f~~~~--~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
++|++|+ ++|||+|+++++|+|+|++++||++++|+++..|.|++||+||.|+.+.++++....+....+.+.+.+
T Consensus 548 ~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 548 AWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp HHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred HHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 9999998 999999999999999999999999999999999999999999999998766664433322333444444
No 54
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.4e-35 Score=245.38 Aligned_cols=202 Identities=34% Similarity=0.640 Sum_probs=184.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 33 ~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
.+|+++++++.+.+++...|+..|+++|.++++.+++++++++.+|||+|||++++++++..+.....+.+++|++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 56999999999999999999999999999999999999999999999999999999999988876666778999999999
Q ss_pred HHHHHHHHHHHhccCc-ceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccC
Q 015454 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (406)
Q Consensus 113 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~ 191 (406)
|+.|+.+.+.++.... +..+....|+............+++|+|+||+++.+.+......+.+++++|+||||.+.+.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 9999999999987765 788888889888877777777889999999999999998887788899999999999999988
Q ss_pred cHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEE
Q 015454 192 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKI 234 (406)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~ 234 (406)
+...+..+...+++..|++++|||+++.....+..++.+|..+
T Consensus 163 ~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999998899999999999999999999998887653
No 55
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.6e-35 Score=254.03 Aligned_cols=211 Identities=57% Similarity=0.958 Sum_probs=178.2
Q ss_pred cCCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEE
Q 015454 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (406)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~l 105 (406)
+..+++..+|+++++++.+.+++...||..|+++|.++++.+++++++++.+|||+|||++|+++++..+.....+.+++
T Consensus 23 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~l 102 (237)
T 3bor_A 23 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQAL 102 (237)
T ss_dssp ----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEE
Confidence 34455678899999999999999999999999999999999999999999999999999999999999887665677899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcC-CCEEEechHHHHHHHHccCCCcCCcceeecchh
Q 015454 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (406)
Q Consensus 106 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~ 184 (406)
|++|+++|+.|+.+.+.+++...+..+..+.++.........+..+ ++|+|+||++|...+........++++||+|||
T Consensus 103 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 182 (237)
T 3bor_A 103 VLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEA 182 (237)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESH
T ss_pred EEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCc
Confidence 9999999999999999999887788888888887766665555444 899999999999999887778888999999999
Q ss_pred hHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEe
Q 015454 185 DEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILV 236 (406)
Q Consensus 185 h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 236 (406)
|.+.+.++...+..+.+.++...|++++|||+++........++.+|..+.+
T Consensus 183 h~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 183 DEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred hHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999889999999999999999999999988876644
No 56
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.6e-35 Score=252.62 Aligned_cols=209 Identities=33% Similarity=0.540 Sum_probs=189.5
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEE
Q 015454 28 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (406)
Q Consensus 28 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil 107 (406)
......+|+++++++.+.+++...|+..|+++|.++++.+++++++++.+|||+|||++|+++++..+.....+.+++|+
T Consensus 38 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil 117 (249)
T 3ber_A 38 EEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVL 117 (249)
T ss_dssp HHHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred cccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999888776667789999
Q ss_pred cCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc-cCCCcCCcceeecchhhH
Q 015454 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDE 186 (406)
Q Consensus 108 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~-~~~~~~~~~~vV~DE~h~ 186 (406)
+|+++|+.|+.+.+.++....++.+..+.|+............+++|+|+||++|.+.+.. ..+.+.++++||+||||.
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 197 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR 197 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHH
T ss_pred eCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhh
Confidence 9999999999999999988778888899998887777777778899999999999998876 456678899999999999
Q ss_pred HhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEe
Q 015454 187 MLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILV 236 (406)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 236 (406)
+.+.++...+..+...+++..|++++|||+++........++.+|..+..
T Consensus 198 l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 198 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999889999999999999999999999998877653
No 57
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4.9e-35 Score=279.29 Aligned_cols=310 Identities=14% Similarity=0.169 Sum_probs=211.8
Q ss_pred CChHHHHHhHHhhh----cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~----~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|+|||.++++.+. .+.++++.++||+|||++++..+.... ......++||+|| .+|+.||.+++.++... .
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~-~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~--~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAK-KENELTPSLVICP-LSVLKNWEEELSKFAPH--L 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHH-HTTCCSSEEEEEC-STTHHHHHHHHHHHCTT--S
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHH-hcCCCCCEEEEcc-HHHHHHHHHHHHHHCCC--c
Confidence 69999999998763 478899999999999988766554443 3334457999999 56899999999998753 4
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEE
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i 210 (406)
.+..+.++... ......+|+|+||+++..... +....+++||+||||.+.+... .....+..++ ..+++
T Consensus 113 ~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l~-~~~~l 181 (500)
T 1z63_A 113 RFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-SKYRI 181 (500)
T ss_dssp CEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-EEEEE
T ss_pred eEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHHHhhc-cCcEE
Confidence 44445554421 112347999999999875432 2334689999999999976542 3334444453 46789
Q ss_pred EEEecCChH----HHHH---------------------------------HHhcCCCCeEEEecCCc----cccCCceEE
Q 015454 211 LISATLPHE----ILEM---------------------------------TTKFMTDPVKILVKRDE----LTLEGIKQF 249 (406)
Q Consensus 211 ~lSAT~~~~----~~~~---------------------------------~~~~~~~~~~~~~~~~~----~~~~~~~~~ 249 (406)
++||||... +... +...+. +..+.....+ ...+.....
T Consensus 182 ~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~-~~~lrr~k~~~~~~~~lp~~~~~ 260 (500)
T 1z63_A 182 ALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS-PFILRRTKYDKAIINDLPDKIET 260 (500)
T ss_dssp EECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT-TTEECCCTTCHHHHTTSCSEEEE
T ss_pred EEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh-hHeeeecccccchhhcCCCCeEE
Confidence 999998432 1111 111111 1111100000 011111111
Q ss_pred EEEecc--------------------------------------------------------cccHHHHHHHHHhhc--C
Q 015454 250 FVAVER--------------------------------------------------------EEWKFDTLCDLYDTL--T 271 (406)
Q Consensus 250 ~~~~~~--------------------------------------------------------~~~~~~~l~~~~~~~--~ 271 (406)
...++. ...|...+..++... .
T Consensus 261 ~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~ 340 (500)
T 1z63_A 261 NVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDE 340 (500)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTT
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHcc
Confidence 111111 112344444555443 4
Q ss_pred CcceEEEecchhhHHHHHHHHhcC-CceEEEeecCCCHHHHHHHHHHHhcC-CCc-EEEEcCcccCCCCCCCCCEEEEec
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRGY-NFTVSSMHGDMPQKERDAIMGEFRSG-TTR-VLITTDVWARGLDVQQVSLVINYD 348 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vli~t~~~~~G~d~~~~~~vi~~~ 348 (406)
+.|+||||++...++.+.+.|... ++.+..+||+++..+|.+++++|+++ ..+ +|++|.++++|+|+|.+++||+++
T Consensus 341 ~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d 420 (500)
T 1z63_A 341 GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFD 420 (500)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESS
T ss_pred CCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeC
Confidence 469999999999999999999875 88999999999999999999999988 555 788999999999999999999999
Q ss_pred CCCChhhhHhhhhhccCCCCceeEEE--EeccCc
Q 015454 349 LPNNRELYIHRIGRSGRFGRKGVAIN--FVKNDD 380 (406)
Q Consensus 349 ~~~s~~~~~Q~~GR~~R~~~~~~~~~--~~~~~~ 380 (406)
+|+++..+.|++||++|.|+.+.+.+ ++....
T Consensus 421 ~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 421 RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp CCSCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred CCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 99999999999999999998876543 444443
No 58
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=6.3e-35 Score=248.68 Aligned_cols=211 Identities=55% Similarity=0.925 Sum_probs=180.7
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEE
Q 015454 28 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (406)
Q Consensus 28 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil 107 (406)
-++....|+++++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|+
T Consensus 9 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil 88 (224)
T 1qde_A 9 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALML 88 (224)
T ss_dssp CCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred cCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999988776677889999
Q ss_pred cCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHH
Q 015454 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (406)
Q Consensus 108 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~ 187 (406)
+|+++|+.|+.+.+.++....++.+..+.|+............ ++|+|+||++|...+........++++||+||||.+
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~ 167 (224)
T 1qde_A 89 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 167 (224)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH
T ss_pred ECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHH
Confidence 9999999999999999988888888888888776655544433 899999999999998888888889999999999999
Q ss_pred hccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEecCC
Q 015454 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 239 (406)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~ 239 (406)
.+.++...+..+...+++..|++++|||+++........++.+|..+....+
T Consensus 168 ~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 168 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred hhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999999999999999889999999999999999999999998877655433
No 59
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=3.2e-35 Score=255.06 Aligned_cols=218 Identities=30% Similarity=0.508 Sum_probs=186.5
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCC---------C
Q 015454 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---------R 100 (406)
Q Consensus 30 ~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~---------~ 100 (406)
++..+|+++++++.+.++|...|+..|+++|.++++.+++++++++++|||+|||++|+++++..+.... .
T Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 20 NVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp SCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred CccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 3677899999999999999999999999999999999999999999999999999999999998775432 3
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceee
Q 015454 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (406)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV 180 (406)
+.++||++|+++|+.|+.+.+.++....++.+..+.|+............+++|+|+||++|.+.+......+.+++++|
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 45899999999999999999999988888888889999888877777778899999999999999988877888999999
Q ss_pred cchhhHHhccCcHHHHHHHHHh--CCC--CceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCce
Q 015454 181 LDESDEMLSRGFKDQIYDVYRY--LPP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIK 247 (406)
Q Consensus 181 ~DE~h~~~~~~~~~~~~~~~~~--~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (406)
+||||.+.+.++...+..+... ++. ..|++++|||+++........++.++..+..........++.
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~ 250 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIK 250 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC----------
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCce
Confidence 9999999999999999998884 333 678999999999999999999999888877665544444443
No 60
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.5e-35 Score=249.15 Aligned_cols=210 Identities=30% Similarity=0.478 Sum_probs=182.8
Q ss_pred ccCCccccccccc-CCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC-----
Q 015454 25 TTEGVEAITSFDA-MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----- 98 (406)
Q Consensus 25 ~~~~~~~~~~~~~-~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~----- 98 (406)
....+++...|++ +++++.+.+++.+.|+..|+++|.++++.+++|+++++.+|||+|||++|+++++..+...
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 4456677788988 8999999999999999999999999999999999999999999999999999998876432
Q ss_pred -CCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcc
Q 015454 99 -SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (406)
Q Consensus 99 -~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~ 177 (406)
..+.+++|++|+++|+.|+.+.+.++. ..++.+..+.++............+++|+|+||+++.+.+......+.+++
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 256789999999999999999999986 456788888888887777777788899999999999999888888889999
Q ss_pred eeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEE
Q 015454 178 LLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKIL 235 (406)
Q Consensus 178 ~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 235 (406)
+||+||||.+.+.++...+..+...++++.|++++|||+++........++.+|..+.
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999998887654
No 61
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=3.5e-35 Score=249.09 Aligned_cols=205 Identities=35% Similarity=0.566 Sum_probs=183.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 33 ~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
.+|+++++++.+.+++...|+..|+++|.++++.+.+++++++++|||+|||++|+++++..+.....+.+++|++|+++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 56999999999999999999999999999999999999999999999999999999999998876666778999999999
Q ss_pred HHHHHHHHHHHhccCc----ceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHh
Q 015454 113 LATQTEKVILAIGDFI----NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (406)
Q Consensus 113 l~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~ 188 (406)
|+.|+.+.+.++.... +..+..+.|+............+++|+|+||+++.+.+......+.+++++|+||||.+.
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 163 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLML 163 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHh
Confidence 9999999999887655 677788888877655544445578999999999999998877888899999999999999
Q ss_pred ccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEec
Q 015454 189 SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVK 237 (406)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~ 237 (406)
+.++...+..+...+++..|++++|||+++++.+++..++.+|..+...
T Consensus 164 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 164 DMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp HTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred hhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 9999999999999998899999999999999999999999998776543
No 62
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.8e-34 Score=246.48 Aligned_cols=208 Identities=35% Similarity=0.568 Sum_probs=181.5
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEE
Q 015454 27 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (406)
Q Consensus 27 ~~~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~li 106 (406)
..+.+..+|+++++++.+.+.+...||..|+++|.++++.+.+|+++++.+|||+|||++|+++++..+.....+.+++|
T Consensus 18 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~li 97 (230)
T 2oxc_A 18 VLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILI 97 (230)
T ss_dssp ------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEE
T ss_pred CCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEE
Confidence 33455678999999999999999999999999999999999999999999999999999999999988766666778999
Q ss_pred EcCcHHHHHHHHHHHHHhccCc-ceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhh
Q 015454 107 LSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESD 185 (406)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h 185 (406)
++|+++|+.|+.+.+.++.... ++.+..+.|+.....+.... .+++|+|+||+++.+.+......+.+++++|+||||
T Consensus 98 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah 176 (230)
T 2oxc_A 98 LAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEAD 176 (230)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHH
T ss_pred EeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCch
Confidence 9999999999999999987654 78888888887766655544 468999999999999988877788899999999999
Q ss_pred HHhccC-cHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEE
Q 015454 186 EMLSRG-FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKIL 235 (406)
Q Consensus 186 ~~~~~~-~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 235 (406)
.+.+.+ +...+..+.+.++...|++++|||+++.....+..++.+|..+.
T Consensus 177 ~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 177 KLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp HHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred HhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 999886 88999999999988999999999999999999988888887653
No 63
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.4e-33 Score=237.39 Aligned_cols=201 Identities=35% Similarity=0.584 Sum_probs=180.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC---CCceeEEEEcCc
Q 015454 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPT 110 (406)
Q Consensus 34 ~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~---~~~~~~lil~P~ 110 (406)
+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+... ..+.+++|++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999998887542 346789999999
Q ss_pred HHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhcc
Q 015454 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (406)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~ 190 (406)
++|+.|+.+.+.++... +.+..+.++............+++|+|+||+++.+.+......+.+++++|+||||.+.+.
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 99999999999998755 5667788888777777777778999999999999998887788889999999999999999
Q ss_pred CcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEe
Q 015454 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILV 236 (406)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 236 (406)
++...+..+...+++..|++++|||+++........++.+|..+..
T Consensus 160 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 160 GFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred chHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999889999999999999999999999888876543
No 64
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.2e-34 Score=277.91 Aligned_cols=287 Identities=17% Similarity=0.215 Sum_probs=205.4
Q ss_pred HhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHh
Q 015454 65 MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED 144 (406)
Q Consensus 65 ~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (406)
...+++++++++||||||||..++..+.. .. ..+|++|+++|+.|+++.+.+. ++.+..+.|+......
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~al~~l~~----~~---~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~ 218 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYHAIQKYFS----AK---SGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ 218 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHHHHHHHHH----SS---SEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHHHHHHh----cC---CeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec
Confidence 34467889999999999999844433332 22 3489999999999999999886 4566677776553100
Q ss_pred HHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCC-CCceEEEEEecCChHHHHH
Q 015454 145 IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVVLISATLPHEILEM 223 (406)
Q Consensus 145 ~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~lSAT~~~~~~~~ 223 (406)
.-....+++++|++.+. ....++++|+||+|.+.+.+++..+..++..++ ...+++++|||. +. ...
T Consensus 219 --TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~-i~~ 286 (677)
T 3rc3_A 219 --PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DL-VME 286 (677)
T ss_dssp --TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HH-HHH
T ss_pred --CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HH-HHH
Confidence 00112678888886543 245679999999999988888888888888777 677899999994 22 333
Q ss_pred HHhcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEee
Q 015454 224 TTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMH 303 (406)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~ 303 (406)
+.........+....... . ... .... + ..+.... ...+|||++++.++.+++.|.+.++.+..+|
T Consensus 287 l~~~~~~~~~v~~~~r~~---~---l~~-~~~~------l-~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~v~~lH 351 (677)
T 3rc3_A 287 LMYTTGEEVEVRDYKRLT---P---ISV-LDHA------L-ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLESAVIY 351 (677)
T ss_dssp HHHHHTCCEEEEECCCSS---C---EEE-CSSC------C-CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCCCEEEC
T ss_pred HHHhcCCceEEEEeeecc---h---HHH-HHHH------H-HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCCeeeee
Confidence 333333333332211110 0 000 0000 0 0111222 4568899999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhc--CCCcEEEEcCcccCCCCCCCCCEEEEecC--------------CCChhhhHhhhhhccCCC
Q 015454 304 GDMPQKERDAIMGEFRS--GTTRVLITTDVWARGLDVQQVSLVINYDL--------------PNNRELYIHRIGRSGRFG 367 (406)
Q Consensus 304 ~~~~~~~r~~~~~~f~~--~~~~vli~t~~~~~G~d~~~~~~vi~~~~--------------~~s~~~~~Q~~GR~~R~~ 367 (406)
|++++.+|..+++.|++ |..+|||||+++++|+|+ ++++||+++. |.+..+|.||+||+||.|
T Consensus 352 G~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g 430 (677)
T 3rc3_A 352 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFS 430 (677)
T ss_dssp TTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTT
T ss_pred ccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCC
Confidence 99999999999999999 889999999999999999 8999999998 778999999999999999
Q ss_pred Cc---eeEEEEeccCcHHHHHHHHHHH
Q 015454 368 RK---GVAINFVKNDDIKILRDIEQYY 391 (406)
Q Consensus 368 ~~---~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
++ |.|+.++ +++...++.+.+..
T Consensus 431 ~~g~~G~v~~l~-~~d~~~~~~~~~~~ 456 (677)
T 3rc3_A 431 SRFKEGEVTTMN-HEDLSLLKEILKRP 456 (677)
T ss_dssp SSCSSEEEEESS-TTHHHHHHHHHHSC
T ss_pred CCCCCEEEEEEe-cchHHHHHHHHhcC
Confidence 65 5555443 44544444444433
No 65
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=241.46 Aligned_cols=207 Identities=28% Similarity=0.500 Sum_probs=181.3
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC----CCceeE
Q 015454 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQA 104 (406)
Q Consensus 29 ~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~----~~~~~~ 104 (406)
.++..+|+++++++.+.+.+...|+..|+++|.++++.++.++++++++|||+|||++|+++++..+... ..+.++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 100 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGV 100 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceE
Confidence 3456789999999999999999999999999999999999999999999999999999999998876431 235679
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHcc-CCCcCCcceeecch
Q 015454 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDE 183 (406)
Q Consensus 105 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~-~~~~~~~~~vV~DE 183 (406)
+|++|+++|+.|+.+.+..++...++.+..+.|+.......... .+++|+|+||+++...+... .+...+++++|+||
T Consensus 101 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 99999999999999999999888888888888888776655554 56899999999999887764 46678899999999
Q ss_pred hhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEe
Q 015454 184 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILV 236 (406)
Q Consensus 184 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 236 (406)
||.+.+.++...+..+...+++..|++++|||+++........++.+|..+..
T Consensus 180 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~ 232 (236)
T 2pl3_A 180 ADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232 (236)
T ss_dssp HHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEEC
T ss_pred hHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEe
Confidence 99999999999999999999989999999999999999999999988877654
No 66
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-33 Score=239.78 Aligned_cols=203 Identities=36% Similarity=0.605 Sum_probs=179.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcH
Q 015454 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (406)
Q Consensus 32 ~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~ 111 (406)
...|+++++++.+.+++...|+..|+++|.++++.+++++++++.+|||+|||++++++++..+.....+.+++|++|++
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 35699999999999999999999999999999999999999999999999999999999998887665566899999999
Q ss_pred HHHHHHHHHHHHhccCc-ceeEEEEECCcchHHhHHHHhc-CCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhc
Q 015454 112 ELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (406)
Q Consensus 112 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~ 189 (406)
+|+.|+.+.++++.... ++.+..+.|+.....+...+.. .++|+|+||+++...+......+.+++++|+||||.+.+
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 172 (220)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHS
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhc
Confidence 99999999999987665 7888888888876666555443 479999999999999888877888999999999999986
Q ss_pred -cCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEE
Q 015454 190 -RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKI 234 (406)
Q Consensus 190 -~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~ 234 (406)
.++...+..+.+.+++..|++++|||+++........++.+|..+
T Consensus 173 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 173 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp SHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEE
T ss_pred ccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEE
Confidence 467778888888888889999999999999999999999888765
No 67
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=249.56 Aligned_cols=206 Identities=37% Similarity=0.596 Sum_probs=181.4
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhcC--CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEE
Q 015454 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (406)
Q Consensus 29 ~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~--~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~li 106 (406)
.....+|+++++++.+.+++...||..|+++|.++++.++.+ +++++++|||||||++|+++++..+.....+.++||
T Consensus 88 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~li 167 (300)
T 3fmo_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLC 167 (300)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEE
T ss_pred cCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEE
Confidence 345678999999999999999999999999999999999987 899999999999999999999999877777778999
Q ss_pred EcCcHHHHHHHHHHHHHhccCc-ceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc-cCCCcCCcceeecchh
Q 015454 107 LSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDES 184 (406)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~-~~~~~~~~~~vV~DE~ 184 (406)
++|+++|+.|+.+.+..++... ++.+....++....... ..+++|+|+||++|..++.+ ..+.+.++++||+|||
T Consensus 168 l~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEa 244 (300)
T 3fmo_B 168 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244 (300)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTH
T ss_pred EcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCH
Confidence 9999999999999999988654 67777777776543321 35679999999999999866 5567889999999999
Q ss_pred hHHhc-cCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCCeEEEec
Q 015454 185 DEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVK 237 (406)
Q Consensus 185 h~~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~ 237 (406)
|.+.+ .++...+..+...+++..|++++|||+++....+...++.+|..+...
T Consensus 245 d~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 245 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 99987 678888999999999999999999999999999999999999877654
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.5e-32 Score=266.09 Aligned_cols=313 Identities=16% Similarity=0.154 Sum_probs=215.5
Q ss_pred CChHHHHHhHHhhh---------cCCcEEEECCCCCChhhHhHHHHHhhhccCC----CceeEEEEcCcHHHHHHHHHHH
Q 015454 55 KPSAIQQRAVMPII---------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----REVQALILSPTRELATQTEKVI 121 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~---------~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~----~~~~~lil~P~~~l~~q~~~~~ 121 (406)
.|+|||.+++..+. .+.++++..+||+|||+.++..+...+.... ...++|||+|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999998874 3467899999999999888777666553332 23469999995 8999999999
Q ss_pred HHhccCcceeEEEEECCcchHHh--HHHHh------cCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcH
Q 015454 122 LAIGDFINIQAHACVGGKSVGED--IRKLE------HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK 193 (406)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~ 193 (406)
.++... .+.+..+.++...... ..... ...+|+|+||+.+.... ..+....+++||+||+|.+.+.. .
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~-~ 209 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD-N 209 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC-H
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh-h
Confidence 998654 4445555555432211 11111 13789999999987643 33445678999999999987654 2
Q ss_pred HHHHHHHHhCCCCceEEEEEecCChHH-------H---------------------------------------------
Q 015454 194 DQIYDVYRYLPPDLQVVLISATLPHEI-------L--------------------------------------------- 221 (406)
Q Consensus 194 ~~~~~~~~~~~~~~~~i~lSAT~~~~~-------~--------------------------------------------- 221 (406)
..... +..+ ...+.+++||||-... .
T Consensus 210 ~~~~a-l~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L 287 (644)
T 1z3i_X 210 QTYLA-LNSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQEL 287 (644)
T ss_dssp HHHHH-HHHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHH
T ss_pred HHHHH-HHhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHH
Confidence 22222 3333 3456899999983210 0
Q ss_pred -HHHHhcCCCCeEEEecCCcc--ccCCceEEEEEe---------------------------------------------
Q 015454 222 -EMTTKFMTDPVKILVKRDEL--TLEGIKQFFVAV--------------------------------------------- 253 (406)
Q Consensus 222 -~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------------------------------------------- 253 (406)
..+..++ +....... ..+........+
T Consensus 288 ~~~l~~~~-----lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~h 362 (644)
T 1z3i_X 288 ISIVNRCL-----IRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNH 362 (644)
T ss_dssp HHHHHHHE-----ECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-----HHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCC
Confidence 0000000 00000000 000000000000
Q ss_pred --------------------------------cccccHHHHHHHHHhh---cCCcceEEEecchhhHHHHHHHHhcCCce
Q 015454 254 --------------------------------EREEWKFDTLCDLYDT---LTITQAVIFCNTKRKVDWLTEKMRGYNFT 298 (406)
Q Consensus 254 --------------------------------~~~~~~~~~l~~~~~~---~~~~k~lif~~~~~~~~~l~~~l~~~~~~ 298 (406)
.....|...+..++.. ....|+|||+++...++.+.+.|...|+.
T Consensus 363 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~ 442 (644)
T 1z3i_X 363 PALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYL 442 (644)
T ss_dssp THHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCC
Confidence 0112234444444443 34579999999999999999999999999
Q ss_pred EEEeecCCCHHHHHHHHHHHhcCCCc---EEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEE-
Q 015454 299 VSSMHGDMPQKERDAIMGEFRSGTTR---VLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIN- 374 (406)
Q Consensus 299 ~~~~~~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~- 374 (406)
+..+||+++..+|..++++|++++.. +|++|.++++|+|++++++||+++++|++..+.|++||++|.|+...+.+
T Consensus 443 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~ 522 (644)
T 1z3i_X 443 YVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIY 522 (644)
T ss_dssp EEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEE
Confidence 99999999999999999999998764 88999999999999999999999999999999999999999998865544
Q ss_pred -EeccC
Q 015454 375 -FVKND 379 (406)
Q Consensus 375 -~~~~~ 379 (406)
++...
T Consensus 523 ~lv~~~ 528 (644)
T 1z3i_X 523 RLLSTG 528 (644)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 44444
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-33 Score=279.40 Aligned_cols=330 Identities=17% Similarity=0.230 Sum_probs=229.1
Q ss_pred CChHHHHHhHHhhh----cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~----~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|++||.+++..+. .+.++++..+||+|||+.++..+...+........+||||| .+++.||.+++.++.. ++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--Cc
Confidence 68999999998766 67899999999999998887766655444444556999999 7889999999999864 35
Q ss_pred eEEEEECCcchHHhHHH------------HhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHH
Q 015454 131 QAHACVGGKSVGEDIRK------------LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYD 198 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~------------~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~ 198 (406)
.+....|+......... .....+|+|+||+++...... +....+++||+||||.+.+.. .....
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~ 388 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYE 388 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHH
Confidence 55566666554433332 123478999999999764322 222357899999999996644 23344
Q ss_pred HHHhCCCCceEEEEEecCC----hHHHHHHHhcCCC-----------------------------CeEEEecCCcc--cc
Q 015454 199 VYRYLPPDLQVVLISATLP----HEILEMTTKFMTD-----------------------------PVKILVKRDEL--TL 243 (406)
Q Consensus 199 ~~~~~~~~~~~i~lSAT~~----~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~--~~ 243 (406)
.+..++ ..+.+++||||- .++..++..+... +..+....... ..
T Consensus 389 ~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~L 467 (800)
T 3mwy_W 389 SLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSL 467 (800)
T ss_dssp HHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTS
T ss_pred HHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhcc
Confidence 444553 455799999982 1121111111110 11110000000 00
Q ss_pred CCceEEEEEecc--------------------------------------------------------------------
Q 015454 244 EGIKQFFVAVER-------------------------------------------------------------------- 255 (406)
Q Consensus 244 ~~~~~~~~~~~~-------------------------------------------------------------------- 255 (406)
+........+..
T Consensus 468 P~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~ 547 (800)
T 3mwy_W 468 PSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENV 547 (800)
T ss_dssp CCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHH
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHH
Confidence 111111111100
Q ss_pred ------cccHHHHHHHHHhhc--CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCC---c
Q 015454 256 ------EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTT---R 324 (406)
Q Consensus 256 ------~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~ 324 (406)
...|...+..++... .+.|+|||++....++.+.+.|...|+.+..+||+++..+|..+++.|++++. .
T Consensus 548 ~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v 627 (800)
T 3mwy_W 548 LRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFV 627 (800)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCC
T ss_pred HHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceE
Confidence 122455566666554 33599999999999999999999999999999999999999999999998655 4
Q ss_pred EEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEE--EeccC--cHHHHHHHHHHHc
Q 015454 325 VLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIN--FVKND--DIKILRDIEQYYS 392 (406)
Q Consensus 325 vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~--~~~~~--~~~~~~~~~~~~~ 392 (406)
+|++|.++++|+|++.+++||+++++||+..+.|++||++|.|++..+.+ ++... +...+....+.+.
T Consensus 628 ~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~ 699 (800)
T 3mwy_W 628 FLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMI 699 (800)
T ss_dssp EEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTT
T ss_pred EEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999998865544 45544 4455555555543
No 70
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=242.75 Aligned_cols=201 Identities=28% Similarity=0.503 Sum_probs=175.9
Q ss_pred cccccccCC--CCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC----CCceeE
Q 015454 31 AITSFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQA 104 (406)
Q Consensus 31 ~~~~~~~~~--l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~----~~~~~~ 104 (406)
....|++++ +++.+.+++...||..|+++|.++++.++.++++++++|||||||++|+++++..+... ..+.++
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 129 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGV 129 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred ccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceE
Confidence 334566666 99999999999999999999999999999999999999999999999999999876542 235679
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHcc-CCCcCCcceeecch
Q 015454 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDE 183 (406)
Q Consensus 105 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~-~~~~~~~~~vV~DE 183 (406)
+|++|+++|+.|+.+.+.++....+..+..+.|+.........+..+++|+|+||+++...+... ...+.++++||+||
T Consensus 130 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDE 209 (262)
T 3ly5_A 130 LILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDE 209 (262)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcC
Confidence 99999999999999999999888888888999998888877777778999999999999887764 36678899999999
Q ss_pred hhHHhccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHhcCCCC
Q 015454 184 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDP 231 (406)
Q Consensus 184 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~ 231 (406)
||.+.+.++...+..+...++...|++++|||+++....+....+.++
T Consensus 210 ah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 210 ADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred hHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999988888776543
No 71
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=236.57 Aligned_cols=215 Identities=24% Similarity=0.457 Sum_probs=178.1
Q ss_pred eccCCcccccccccC----CCCHHHHHHHHHCCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc-C
Q 015454 24 ETTEGVEAITSFDAM----GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-S 98 (406)
Q Consensus 24 ~~~~~~~~~~~~~~~----~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~-~ 98 (406)
.....+.+..+|+++ ++++.+.+++...|+..|+++|.++++.+++|+++++.+|||+|||++|+++++..+.. .
T Consensus 16 ~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~ 95 (245)
T 3dkp_A 16 QGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA 95 (245)
T ss_dssp ESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc
Confidence 344556677888876 89999999999999999999999999999999999999999999999999999988754 3
Q ss_pred CCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhH-HHHhcCCCEEEechHHHHHHHHcc--CCCcCC
Q 015454 99 SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI-RKLEHGVHVVSGTPGRVCDMIKRK--TLRTRA 175 (406)
Q Consensus 99 ~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iii~T~~~l~~~l~~~--~~~~~~ 175 (406)
..+.+++|++|+++|+.|+.+.+.++....+..+..+.++....... .....+++|+|+||+++...+... ...+.+
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 96 NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 34668999999999999999999999887777777666554332221 122356799999999999998876 466788
Q ss_pred cceeecchhhHHhc---cCcHHHHHHHHHhC-CCCceEEEEEecCChHHHHHHHhcCCCCeEEEecC
Q 015454 176 IKLLVLDESDEMLS---RGFKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKR 238 (406)
Q Consensus 176 ~~~vV~DE~h~~~~---~~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~ 238 (406)
++++|+||||.+.+ .++...+..++..+ +++.|++++|||++++...+...++.++..+....
T Consensus 176 ~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp CCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred CcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 99999999999987 45777777776665 45789999999999999999999999998877654
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=4.1e-32 Score=272.65 Aligned_cols=309 Identities=10% Similarity=0.078 Sum_probs=204.4
Q ss_pred CChHHHHHhHHhhhc--------------CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHH
Q 015454 55 KPSAIQQRAVMPIIK--------------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKV 120 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~--------------~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~ 120 (406)
.|+++|.+|++.+++ +++++++++||||||+++ +++...+.......++||++|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999998875 367999999999999997 44555554434446899999999999999999
Q ss_pred HHHhccCcceeEEEEECCcchHHhHHHH-hcCCCEEEechHHHHHHHHccC--CCcCCcceeecchhhHHhccCcHHHHH
Q 015454 121 ILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEMLSRGFKDQIY 197 (406)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~l~~~~--~~~~~~~~vV~DE~h~~~~~~~~~~~~ 197 (406)
+..+.... +.++.+.......+ ..+.+|+|+||++|...+.... ..+..+.+||+||||+.... ....
T Consensus 350 f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~---~~~~ 420 (1038)
T 2w00_A 350 YQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG---EAQK 420 (1038)
T ss_dssp HHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH---HHHH
T ss_pred HHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch---HHHH
Confidence 98876431 12333333333334 3468999999999998776532 23456889999999986532 3345
Q ss_pred HHHHhCCCCceEEEEEecCChH--------HHH-------------HHHhcCCCCeEEEecCCcccc-----C-C-----
Q 015454 198 DVYRYLPPDLQVVLISATLPHE--------ILE-------------MTTKFMTDPVKILVKRDELTL-----E-G----- 245 (406)
Q Consensus 198 ~~~~~~~~~~~~i~lSAT~~~~--------~~~-------------~~~~~~~~~~~~~~~~~~~~~-----~-~----- 245 (406)
.+...++ +.+++++||||... ... .+......|..+......... . .
T Consensus 421 ~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~ 499 (1038)
T 2w00_A 421 NLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLS 499 (1038)
T ss_dssp HHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHH
T ss_pred HHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHH
Confidence 5666665 47899999999642 111 111111112221111000000 0 0
Q ss_pred -ceEEEEEecccccHHHHHH-HHHhhc-----------CCcceEEEecchhhHHHHHHHHhcCC------------ceE-
Q 015454 246 -IKQFFVAVEREEWKFDTLC-DLYDTL-----------TITQAVIFCNTKRKVDWLTEKMRGYN------------FTV- 299 (406)
Q Consensus 246 -~~~~~~~~~~~~~~~~~l~-~~~~~~-----------~~~k~lif~~~~~~~~~l~~~l~~~~------------~~~- 299 (406)
.... .... .......+. .++..+ ...+++|||++++.|..+++.|.+.+ .++
T Consensus 500 ~i~~~-~~l~-~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~a 577 (1038)
T 2w00_A 500 AAENQ-QAFL-HPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIA 577 (1038)
T ss_dssp HTCST-TTTT-CHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEE
T ss_pred HHHHH-HHhc-CHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEE
Confidence 0000 0000 111122222 222211 23479999999999999999997653 444
Q ss_pred EEeecC----------C----------CH-----------------------------HHHHHHHHHHhcCCCcEEEEcC
Q 015454 300 SSMHGD----------M----------PQ-----------------------------KERDAIMGEFRSGTTRVLITTD 330 (406)
Q Consensus 300 ~~~~~~----------~----------~~-----------------------------~~r~~~~~~f~~~~~~vli~t~ 330 (406)
.++|+. + ++ ..|..++++|++|+++|||+|+
T Consensus 578 vv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd 657 (1038)
T 2w00_A 578 TIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVG 657 (1038)
T ss_dssp EECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESS
T ss_pred EEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcc
Confidence 455542 1 22 1377889999999999999999
Q ss_pred cccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCc----eeEEEEec
Q 015454 331 VWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK----GVAINFVK 377 (406)
Q Consensus 331 ~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~----~~~~~~~~ 377 (406)
++.+|+|+|.+ +++.++.|.+...|+|++||++|.+.. |.++.|..
T Consensus 658 ~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 658 MFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp TTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred hHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999999999 667788999999999999999998753 55555544
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.4e-29 Score=238.03 Aligned_cols=317 Identities=15% Similarity=0.186 Sum_probs=228.7
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|+ .|++.|.-..-.+..|+ |..+.||+|||+++.+|+.-.... |..+.+++|+..|+.|-++++..+....++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---G~~vhVvT~ndyLA~rdae~m~~l~~~Lgl 145 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---GKGVHLVTVNDYLARRDALWMGPVYLFLGL 145 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---CCceEEEeccHHHHHhHHHHHHHHHHHhCC
Confidence 466 68899988877777665 999999999999999998744333 445899999999999999999999999999
Q ss_pred eEEEEECC--------------------------------------------------cchHHhHHHHhcCCCEEEechH
Q 015454 131 QAHACVGG--------------------------------------------------KSVGEDIRKLEHGVHVVSGTPG 160 (406)
Q Consensus 131 ~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~iii~T~~ 160 (406)
++..+... .+..++... ..+||..+|..
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~a--Y~~DItYgTn~ 223 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEA--YLCDVTYGTNN 223 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHH--HHSSEEEEEHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHH--hcCCCEEccCc
Confidence 99988872 111122222 23799999988
Q ss_pred HHH-HHHHccC------CCcCCcceeecchhhHHhccC----------------cHHHHHHHHHhCC-------------
Q 015454 161 RVC-DMIKRKT------LRTRAIKLLVLDESDEMLSRG----------------FKDQIYDVYRYLP------------- 204 (406)
Q Consensus 161 ~l~-~~l~~~~------~~~~~~~~vV~DE~h~~~~~~----------------~~~~~~~~~~~~~------------- 204 (406)
-|- +++.++. .-...+.+.|+||++.++-.. ....+..+.+.+.
T Consensus 224 EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~ 303 (822)
T 3jux_A 224 EFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKART 303 (822)
T ss_dssp HHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSC
T ss_pred chhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCe
Confidence 774 4555432 123668899999999864110 0011111111110
Q ss_pred --------------------------------------------------------------------------------
Q 015454 205 -------------------------------------------------------------------------------- 204 (406)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (406)
T Consensus 304 v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiE 383 (822)
T 3jux_A 304 IILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIE 383 (822)
T ss_dssp EEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHH
T ss_pred EEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHH
Confidence
Q ss_pred ------------------------CCceEEEEEecCChHHHHHHHhcCCCCeEEEecCCccccCCceEEEEEecccccHH
Q 015454 205 ------------------------PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF 260 (406)
Q Consensus 205 ------------------------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (406)
--.++.+||+|...+..++...+... .+.+ +...+................+.
T Consensus 384 aKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~I-Ptnkp~~R~d~~d~vy~t~~eK~ 460 (822)
T 3jux_A 384 AKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVI-PTHKPMIRKDHDDLVFRTQKEKY 460 (822)
T ss_dssp HHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEEC-CCSSCCCCEECCCEEESSHHHHH
T ss_pred HHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEE-CCCCCcceeecCcEEEecHHHHH
Confidence 00479999999988766665554333 2222 22222222222122233445577
Q ss_pred HHHHHHHhhc--CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCC
Q 015454 261 DTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDV 338 (406)
Q Consensus 261 ~~l~~~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~ 338 (406)
..+...+... ...++||||+|++.++.+++.|.+.|+++..+||+....++..+...++.| .|+|||+++++|+|+
T Consensus 461 ~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI 538 (822)
T 3jux_A 461 EKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDI 538 (822)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCC
T ss_pred HHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCc
Confidence 7777776643 346899999999999999999999999999999995555555455555544 699999999999999
Q ss_pred C--------CCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCc
Q 015454 339 Q--------QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDD 380 (406)
Q Consensus 339 ~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 380 (406)
+ +..+||.++.|.+...|.||+||+||.|.+|.++.|++.+|
T Consensus 539 ~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 539 KLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp CCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred cCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 8 56699999999999999999999999999999999998876
No 74
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=1.2e-28 Score=198.70 Aligned_cols=162 Identities=65% Similarity=1.110 Sum_probs=147.9
Q ss_pred CceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCc
Q 015454 245 GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTR 324 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 324 (406)
++.+++..++....|...|..+++....+++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 56777777777666999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccc
Q 015454 325 VLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVAD 404 (406)
Q Consensus 325 vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (406)
|||+|+++++|+|+|++++||+++.|++...|.||+||+||.|++|.+++++.+.+...+..++++++..++++|.++.+
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 162 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCTT
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cC
Q 015454 405 LI 406 (406)
Q Consensus 405 ~~ 406 (406)
++
T Consensus 163 ~~ 164 (165)
T 1fuk_A 163 LL 164 (165)
T ss_dssp TT
T ss_pred hc
Confidence 64
No 75
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=1.1e-27 Score=192.61 Aligned_cols=158 Identities=42% Similarity=0.702 Sum_probs=146.5
Q ss_pred cccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhc
Q 015454 241 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS 320 (406)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 320 (406)
....++.+++..++.. .|...|..+++....+++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~~~-~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREE-NKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCGG-GHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECChH-HHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 3455677777777654 499999999998888899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCC
Q 015454 321 GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMP 399 (406)
Q Consensus 321 ~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (406)
|+.+|||+|+++++|+|+|++++||+++.|+++..|.||+||+||.|++|.+++++.+.+...++.+++.++..+++++
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988877654
No 76
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=200.08 Aligned_cols=178 Identities=28% Similarity=0.416 Sum_probs=145.7
Q ss_pred hcCCCCeEEEecCCccccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecC
Q 015454 226 KFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGD 305 (406)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~ 305 (406)
.++.+|..+..........++.+.+..++.. .|...|..++.... +++||||++++.++.+++.|...++.+..+||+
T Consensus 10 ~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~-~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 10 GVDLGTENLYFQSMGAASLDVIQEVEYVKEE-AKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp ------------------CCSEEEEEECCGG-GHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred cccCCCEEEEECCCCCCCcCceEEEEEcChH-HHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 3455666666655566667888888777655 58899999988754 689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccC-cHHHH
Q 015454 306 MPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKND-DIKIL 384 (406)
Q Consensus 306 ~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~ 384 (406)
+++.+|..+++.|++|+.+|||+|+++++|+|+|++++||++++|+++..|.||+||+||.|++|.+++|+.+. +...+
T Consensus 88 ~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~ 167 (191)
T 2p6n_A 88 KDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVL 167 (191)
T ss_dssp SCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875 78899
Q ss_pred HHHHHHHccccccCCcccccc
Q 015454 385 RDIEQYYSTQIDEMPMNVADL 405 (406)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~ 405 (406)
+.+++.+......+|++|.++
T Consensus 168 ~~l~~~l~~~~~~~p~~l~~~ 188 (191)
T 2p6n_A 168 MDLKALLLEAKQKVPPVLQVL 188 (191)
T ss_dssp HHHHHHHHHTTCCCCHHHHST
T ss_pred HHHHHHHHHccCcCCHHHHhh
Confidence 999999999999999988764
No 77
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=8.6e-28 Score=195.68 Aligned_cols=162 Identities=43% Similarity=0.829 Sum_probs=148.6
Q ss_pred cccCCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhc
Q 015454 241 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS 320 (406)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 320 (406)
....++.+++..++....|...|..+++....+++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34567888888888877799999999998888899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCcccCCCCCCCCCEEEEecCC------CChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccc
Q 015454 321 GTTRVLITTDVWARGLDVQQVSLVINYDLP------NNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQ 394 (406)
Q Consensus 321 ~~~~vli~t~~~~~G~d~~~~~~vi~~~~~------~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
|+.+|||+|+++++|+|+|++++||+++.| .+...|+||+||+||.|+.|.+++++.+.+...+..+++.++..
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cccCCccc
Q 015454 395 IDEMPMNV 402 (406)
Q Consensus 395 ~~~~~~~~ 402 (406)
+++++..-
T Consensus 163 ~~~~~~~~ 170 (175)
T 2rb4_A 163 IKQLNAED 170 (175)
T ss_dssp CEEECSSC
T ss_pred ccccCCch
Confidence 98888654
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=7.3e-28 Score=195.06 Aligned_cols=159 Identities=35% Similarity=0.705 Sum_probs=144.8
Q ss_pred CCceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCC
Q 015454 244 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTT 323 (406)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 323 (406)
..+.+++..++.. .|...|..+++....+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.
T Consensus 4 ~~i~q~~~~~~~~-~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDN-EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGG-GHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChH-HHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 4667777777654 499999999998888899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccC-cHHHHHHHHHHHccccccCCccc
Q 015454 324 RVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKND-DIKILRDIEQYYSTQIDEMPMNV 402 (406)
Q Consensus 324 ~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 402 (406)
+|||+|+++++|+|+|++++||+++.|+++..|.||+||+||.|+.|.+++++.+. +...++.+++.+...++++|.++
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999875 56889999999999999999876
Q ss_pred c
Q 015454 403 A 403 (406)
Q Consensus 403 ~ 403 (406)
+
T Consensus 163 ~ 163 (172)
T 1t5i_A 163 D 163 (172)
T ss_dssp -
T ss_pred c
Confidence 4
No 79
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=5.7e-28 Score=197.85 Aligned_cols=165 Identities=36% Similarity=0.573 Sum_probs=137.9
Q ss_pred ccccCCceEEEEEecccccHHHHHHHHHhhc-CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHH
Q 015454 240 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEF 318 (406)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 318 (406)
....+++.+.+..++.. .|...|..+++.. ..+++||||++++.++.+++.|...|+.+..+||+++..+|..+++.|
T Consensus 14 ~~~~~~i~q~~~~v~~~-~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 14 GSTSENITQKVVWVEES-DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp --CCTTEEEEEEECCGG-GHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCCCceEEEEEeCcH-HHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 34456788888877755 4888999999877 457999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccC
Q 015454 319 RSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEM 398 (406)
Q Consensus 319 ~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (406)
++|+.+|||+|+++++|+|+|++++||++++|+++..|.||+||+||.|++|.+++++.+.+...++.+.+.++...+++
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 172 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV 172 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccccc
Q 015454 399 PMNVADL 405 (406)
Q Consensus 399 ~~~~~~~ 405 (406)
|+++.++
T Consensus 173 ~~~l~~~ 179 (185)
T 2jgn_A 173 PSWLENM 179 (185)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9988653
No 80
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=2.1e-26 Score=224.02 Aligned_cols=116 Identities=22% Similarity=0.315 Sum_probs=106.8
Q ss_pred CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecC-
Q 015454 271 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL- 349 (406)
Q Consensus 271 ~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~- 349 (406)
.+.++||||+++..++.+++.|.+.|+.+..+||+++..+|..+++.|+.|+++|||+|+.+++|+|+|++++||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHH
Q 015454 350 ----PNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDI 387 (406)
Q Consensus 350 ----~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~ 387 (406)
|.+...|+||+||+||.+ .|.+++++++.+....+.+
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i 558 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAI 558 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHH
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHH
Confidence 889999999999999995 8999999988765444333
No 81
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=6.9e-25 Score=210.25 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=110.5
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.|+ .|++.|..+++.++.|+ +..+.||+|||+++.+|++..... +..++|++||+.|+.|.++++..+....++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~lGL 149 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRGLGL 149 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 688 89999999999999987 999999999999999999543332 346999999999999999999999999999
Q ss_pred eEEEEECCcchHHhHHHHhcCCCEEEechHHH-HHHHHccC------CCcC---CcceeecchhhHHh
Q 015454 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT------LRTR---AIKLLVLDESDEML 188 (406)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~l~~~~------~~~~---~~~~vV~DE~h~~~ 188 (406)
++..+.|+.+...+ ....+++|+|+||..| .+++..+. ..++ .+.++|+||+|.++
T Consensus 150 sv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 150 SVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred eEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999998875433 3334689999999999 77777653 4456 89999999999976
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=1.2e-25 Score=218.64 Aligned_cols=130 Identities=22% Similarity=0.340 Sum_probs=113.7
Q ss_pred CCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCCCCCEEEEecC-
Q 015454 271 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL- 349 (406)
Q Consensus 271 ~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~- 349 (406)
.+.++||||+++..++.+++.|.+.|+.+..+||++++.+|..+++.|++|+++|||+|+.+++|+|+|++++||+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHH---------HHHHHHccccccCCcc
Q 015454 350 ----PNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILR---------DIEQYYSTQIDEMPMN 401 (406)
Q Consensus 350 ----~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 401 (406)
|.+...|+||+||+||. ..|.+++++++.+....+ .+++.+.......|..
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~~~r~i~~~~~~~~~~~p~~ 587 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKT 587 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Confidence 89999999999999998 789999999887654433 3444455554444443
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=6.1e-26 Score=190.19 Aligned_cols=145 Identities=32% Similarity=0.573 Sum_probs=136.7
Q ss_pred cccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCC
Q 015454 256 EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARG 335 (406)
Q Consensus 256 ~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 335 (406)
...+.+.+..++.....+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 34599999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCc
Q 015454 336 LDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPM 400 (406)
Q Consensus 336 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (406)
+|+|++++||+++.|++...|.||+||+||.|++|.+++++.+.+...++.+++.++..++.++.
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 159 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 159 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCC
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCC
Confidence 99999999999999999999999999999999999999999999999999999999988887764
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=4e-25 Score=193.62 Aligned_cols=154 Identities=32% Similarity=0.542 Sum_probs=138.8
Q ss_pred ceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcE
Q 015454 246 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRV 325 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 325 (406)
+.+++..++. ..|.+.+..+++....+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|
T Consensus 3 v~~~~i~~~~-~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPV-RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCS-SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCH-HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 3455555555 449999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCc
Q 015454 326 LITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPM 400 (406)
Q Consensus 326 li~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (406)
||||+++++|+|+|++++||+++.|++...|.||+||+||.|++|.+++++.+.+...++.+++.++..++.++.
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~ 156 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 156 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988887764
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=3.2e-27 Score=191.22 Aligned_cols=155 Identities=32% Similarity=0.549 Sum_probs=141.4
Q ss_pred CceEEEEEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCc
Q 015454 245 GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTR 324 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 324 (406)
++.+.+..++....+...|..+++....+++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 34555555655456888888888887778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCcccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHccccccCC
Q 015454 325 VLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMP 399 (406)
Q Consensus 325 vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (406)
|||+|+++++|+|+|++++||+++.|++...|.||+||+||.|+.|.+++++.+.+...+..+++.++..++..+
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 157 (170)
Confidence 999999999999999999999999999999999999999999999999999999999999999999888876554
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=9e-25 Score=184.80 Aligned_cols=164 Identities=14% Similarity=0.157 Sum_probs=118.0
Q ss_pred CCCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccC---CCceeEEEEcCcHHHHHH-HHHHHHHhcc
Q 015454 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTRELATQ-TEKVILAIGD 126 (406)
Q Consensus 51 ~~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~---~~~~~~lil~P~~~l~~q-~~~~~~~~~~ 126 (406)
.....|+++|.++++.+.+++++++.+|||+|||++++.++...+... ..+.+++|++|+++|+.| +.+.+..+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 344589999999999999999999999999999999999888765432 235679999999999999 7788888764
Q ss_pred CcceeEEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccC------CCcCCcceeecchhhHHhccCcHHHH-HHH
Q 015454 127 FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT------LRTRAIKLLVLDESDEMLSRGFKDQI-YDV 199 (406)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~------~~~~~~~~vV~DE~h~~~~~~~~~~~-~~~ 199 (406)
. ++.+..+.++............+++|+|+||++|...+.... ..+.++++||+||||.+...++...+ ..+
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHH
Confidence 4 566777777665554444444568999999999998887643 55678999999999999766543333 333
Q ss_pred HHhC-------------CCCceEEEEEec
Q 015454 200 YRYL-------------PPDLQVVLISAT 215 (406)
Q Consensus 200 ~~~~-------------~~~~~~i~lSAT 215 (406)
.... .+.++++++|||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 2211 156889999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.91 E-value=1.1e-23 Score=201.06 Aligned_cols=111 Identities=13% Similarity=0.245 Sum_probs=71.8
Q ss_pred HHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEE--EcCcccCCCCCC
Q 015454 262 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLI--TTDVWARGLDVQ 339 (406)
Q Consensus 262 ~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli--~t~~~~~G~d~~ 339 (406)
.+..++.. ..+++|||++|...++.+.+.+.. .. ...++.. .++..+++.|+++. .|++ +|..+.+|+|+|
T Consensus 375 ~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~ 447 (540)
T 2vl7_A 375 LLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFR 447 (540)
T ss_dssp HHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-----------
T ss_pred HHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecC
Confidence 34444443 347899999999999999988865 23 3344443 46888999998864 6777 789999999999
Q ss_pred C----CCEEEEecCCCChh------------------------------hhHhhhhhccCCCCceeEEEEeccC
Q 015454 340 Q----VSLVINYDLPNNRE------------------------------LYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 340 ~----~~~vi~~~~~~s~~------------------------------~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
+ +++||+.+.|.... .+.|.+||+.|...+.-++++++++
T Consensus 448 ~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 448 EKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp ----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred CCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 7 78999999884322 2569999999997775566677654
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.90 E-value=3.1e-21 Score=184.91 Aligned_cols=308 Identities=16% Similarity=0.141 Sum_probs=197.3
Q ss_pred CChHHHHHhHHh----hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcce
Q 015454 55 KPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (406)
Q Consensus 55 ~l~~~Q~~~~~~----i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (406)
.+|++|.+.+.. +..|+++++.+|||+|||++|++|++. .+.+++|++||++|+.|+.+++..+....++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 689999987664 456899999999999999999999987 2468999999999999999999888766667
Q ss_pred eEEEEECCcch---------------------------------HHh------------------HHHHhcCCCEEEech
Q 015454 131 QAHACVGGKSV---------------------------------GED------------------IRKLEHGVHVVSGTP 159 (406)
Q Consensus 131 ~~~~~~~~~~~---------------------------------~~~------------------~~~~~~~~~iii~T~ 159 (406)
++..+.|..+. ... .+.....++|+|+||
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 76666553221 000 122234689999999
Q ss_pred HHHHHHHHccCCCc-CCcceeecchhhHHhccCc----------------------------------------------
Q 015454 160 GRVCDMIKRKTLRT-RAIKLLVLDESDEMLSRGF---------------------------------------------- 192 (406)
Q Consensus 160 ~~l~~~l~~~~~~~-~~~~~vV~DE~h~~~~~~~---------------------------------------------- 192 (406)
..|........+.. ....++|+||||.+.+ ..
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~ 235 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYI 235 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCE
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99987654443322 4677899999998755 10
Q ss_pred ---------HHHH----------------------------HHHHH----------------------------hCCCC-
Q 015454 193 ---------KDQI----------------------------YDVYR----------------------------YLPPD- 206 (406)
Q Consensus 193 ---------~~~~----------------------------~~~~~----------------------------~~~~~- 206 (406)
...+ ..++. .+...
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~ 315 (551)
T 3crv_A 236 KVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNE 315 (551)
T ss_dssp ECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTT
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccC
Confidence 0000 00000 01122
Q ss_pred ceEEEEEecCChHHHHHHHhcCCCC--eEE----EecCCccccCCceEEEEEeccc-------c----cHHHHHHHHHhh
Q 015454 207 LQVVLISATLPHEILEMTTKFMTDP--VKI----LVKRDELTLEGIKQFFVAVERE-------E----WKFDTLCDLYDT 269 (406)
Q Consensus 207 ~~~i~lSAT~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~l~~~~~~ 269 (406)
..+|++|||+.+ .......++-+ ... ....... ..-...+...... . ...+.+..+++.
T Consensus 316 ~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~ 391 (551)
T 3crv_A 316 LSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ 391 (551)
T ss_dssp CEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh
Confidence 578999999987 34333333322 210 0111112 1212222221111 1 112233334433
Q ss_pred cCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEc--CcccCCCCCC-----CCC
Q 015454 270 LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT--DVWARGLDVQ-----QVS 342 (406)
Q Consensus 270 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t--~~~~~G~d~~-----~~~ 342 (406)
.+++++||++|....+.+.+. .+..+..-..+++ +...++.|+.+...||+++ ..+.+|+|+| .++
T Consensus 392 -~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~ 464 (551)
T 3crv_A 392 -AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLIS 464 (551)
T ss_dssp -CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEE
T ss_pred -CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCccee
Confidence 347899999999999888863 3444444333444 4557778854445899998 6999999999 378
Q ss_pred EEEEecCCCCh------------------------------hhhHhhhhhccCCCCceeEEEEeccCc
Q 015454 343 LVINYDLPNNR------------------------------ELYIHRIGRSGRFGRKGVAINFVKNDD 380 (406)
Q Consensus 343 ~vi~~~~~~s~------------------------------~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 380 (406)
.||+.+.|... ....|.+||+-|...+.-++++++++=
T Consensus 465 ~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~ 532 (551)
T 3crv_A 465 DVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRF 532 (551)
T ss_dssp EEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGGG
T ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehhc
Confidence 89998876421 113499999999988877777777653
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=1.5e-22 Score=177.94 Aligned_cols=153 Identities=22% Similarity=0.204 Sum_probs=121.6
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEE
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (406)
.|+++|.++++.++++.+.++++|||+|||.+++.++...+... ..++||++|+++|+.|+.+++.+++......+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 79999999999999888899999999999999988777665432 3379999999999999999999987666667777
Q ss_pred EECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEe
Q 015454 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (406)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 214 (406)
+.++..... ......+|+|+||+++.+. .......+++||+||||.+.+ ..+..++..+....+++++||
T Consensus 191 ~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 191 IGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECS
T ss_pred EeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeC
Confidence 766654422 1224579999999887543 223456789999999999864 366677777767899999999
Q ss_pred cCChH
Q 015454 215 TLPHE 219 (406)
Q Consensus 215 T~~~~ 219 (406)
|+++.
T Consensus 261 Tp~~~ 265 (282)
T 1rif_A 261 SLRDG 265 (282)
T ss_dssp SCCTT
T ss_pred CCCCc
Confidence 99754
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.85 E-value=2e-20 Score=159.73 Aligned_cols=157 Identities=19% Similarity=0.237 Sum_probs=116.1
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCC--ceeEEEEcCcHHHHHHHHHHHHHhcc-Cccee
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGD-FINIQ 131 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~-~~~~~ 131 (406)
.++++|.++++.+.+|+++++.||||||||..+..+++........ +.+++++.|+++++.|..+.+..... ..+..
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 4799999999999999999999999999998888887776543332 45799999999999999988865432 22333
Q ss_pred EEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHH-hccCcH-HHHHHHHHhCCCCceE
Q 015454 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM-LSRGFK-DQIYDVYRYLPPDLQV 209 (406)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~-~~~~~~-~~~~~~~~~~~~~~~~ 209 (406)
+......... ....+.+|+|+||++|.+.+.. .+.++++||+||+|.. .+.++. ..+..+.... ++.|+
T Consensus 141 ~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~ 211 (235)
T 3llm_A 141 CGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRI 211 (235)
T ss_dssp EEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEE
T ss_pred EEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeE
Confidence 3322211110 0013478999999999998876 3778999999999984 444444 3555566554 47899
Q ss_pred EEEEecCChHH
Q 015454 210 VLISATLPHEI 220 (406)
Q Consensus 210 i~lSAT~~~~~ 220 (406)
+++|||++.+.
T Consensus 212 il~SAT~~~~~ 222 (235)
T 3llm_A 212 VLMSATIDTSM 222 (235)
T ss_dssp EEEECSSCCHH
T ss_pred EEEecCCCHHH
Confidence 99999998865
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.84 E-value=3.1e-19 Score=172.28 Aligned_cols=112 Identities=15% Similarity=0.220 Sum_probs=77.7
Q ss_pred HHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEc--CcccCCCCCCC
Q 015454 263 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT--DVWARGLDVQQ 340 (406)
Q Consensus 263 l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t--~~~~~G~d~~~ 340 (406)
+..+++..+ ++++||++|....+.+++.++..+.+ ...+++..++..++++|+ ++..||+++ ..+.+|+|+|+
T Consensus 440 i~~l~~~~~-g~~lvlF~Sy~~l~~v~~~l~~~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g 514 (620)
T 4a15_A 440 IEDIILKVK-KNTIVYFPSYSLMDRVENRVSFEHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPG 514 (620)
T ss_dssp HHHHHHHHC-SCEEEEESCHHHHHHHTSSCCSCCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------
T ss_pred HHHHHHhCC-CCEEEEeCCHHHHHHHHHHHHhcchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCC
Confidence 444444443 67999999999999999888732222 444555668899999999 888999997 49999999985
Q ss_pred --CCEEEEecCCCCh-----------------------------hhhHhhhhhccCCCCceeEEEEeccC
Q 015454 341 --VSLVINYDLPNNR-----------------------------ELYIHRIGRSGRFGRKGVAINFVKND 379 (406)
Q Consensus 341 --~~~vi~~~~~~s~-----------------------------~~~~Q~~GR~~R~~~~~~~~~~~~~~ 379 (406)
++.||+.+.|... ....|.+||+-|...+.-++++++++
T Consensus 515 ~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 515 NELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred CceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 7899999987532 11369999999998776677777654
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.83 E-value=6.9e-20 Score=156.01 Aligned_cols=138 Identities=16% Similarity=0.150 Sum_probs=107.9
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCccee-EE
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ-AH 133 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~-~~ 133 (406)
.|+++|.+++..+.+++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.+.++ +.. +.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~ 162 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEE
Confidence 6899999999999999899999999999999988776553 356999999999999999999884 345 55
Q ss_pred EEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
.+.++.. ...+|+|+|++.+....... ...+++||+||+|.+.+..+. .+...++ ..+++++|
T Consensus 163 ~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l~LS 225 (237)
T 2fz4_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGLT 225 (237)
T ss_dssp EESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEEEEE
T ss_pred EEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhcc-CCEEEEEe
Confidence 6665543 24799999999987655421 245899999999998766543 3444444 57789999
Q ss_pred ecCChH
Q 015454 214 ATLPHE 219 (406)
Q Consensus 214 AT~~~~ 219 (406)
|||...
T Consensus 226 ATp~r~ 231 (237)
T 2fz4_A 226 ATFERE 231 (237)
T ss_dssp ESCC--
T ss_pred cCCCCC
Confidence 998753
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.78 E-value=7.2e-19 Score=152.18 Aligned_cols=124 Identities=16% Similarity=0.238 Sum_probs=96.8
Q ss_pred cccHHHHHHHHHhhc--CCcceEEEecchhhHHHHHHHHhcC-CceEEEeecCCCHHHHHHHHHHHhcC-CCc-EEEEcC
Q 015454 256 EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGY-NFTVSSMHGDMPQKERDAIMGEFRSG-TTR-VLITTD 330 (406)
Q Consensus 256 ~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vli~t~ 330 (406)
...|...+..++... .+.|+||||++...++.+...|... |+.+..+||+++..+|..++++|+++ ..+ +|++|.
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 445888888888776 5679999999999999999999874 89999999999999999999999998 677 688999
Q ss_pred cccCCCCCCCCCEEEEecCCCChhhhHhhhhhccCCCCceeE--EEEeccC
Q 015454 331 VWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA--INFVKND 379 (406)
Q Consensus 331 ~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~--~~~~~~~ 379 (406)
++++|+|++.+++||++++||++..+.|++||++|.|+.+.+ +.++...
T Consensus 174 ~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 174 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 999999999999999999999999999999999999988765 3445544
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.81 E-value=8.1e-09 Score=99.68 Aligned_cols=146 Identities=16% Similarity=0.211 Sum_probs=87.1
Q ss_pred hHHHHHhHHhhhcCCcEEEECCCCCChhh--HhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEE
Q 015454 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTS--MIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (406)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~il~~~tGsGKT~--~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (406)
.++|+.+++.++.++.+++.|++|+|||. .++++.+..+.. ..+.++++++||...+.++.+.+.......++....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHH
Confidence 68999999999999999999999999994 444444443322 235679999999999999988876544332221000
Q ss_pred EECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEe
Q 015454 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (406)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 214 (406)
. .+.. .....+ ..++-.+|... . +.........++++|+||++.+. ...+..++..++...|++++.-
T Consensus 230 ~-~~~~--~~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml~----~~~~~~Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 230 K-KRIP--EDASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMID----LPMMSRLIDALPDHARVIFLGD 297 (608)
T ss_dssp C-CSCS--CCCBTT---TSCC-------------CTTSCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTCEEEEEEC
T ss_pred H-hccc--hhhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechhhCC----HHHHHHHHHhCCCCCEEEEEcc
Confidence 0 0000 000000 11121222211 0 11111222368999999999543 3466778888888888888765
Q ss_pred c
Q 015454 215 T 215 (406)
Q Consensus 215 T 215 (406)
.
T Consensus 298 ~ 298 (608)
T 1w36_D 298 R 298 (608)
T ss_dssp T
T ss_pred h
Confidence 5
No 95
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.54 E-value=7.1e-06 Score=80.39 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=57.3
Q ss_pred CCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc-CCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 54 ~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
..|++-|.+++.. .+..++|.|++|||||.+..--+...+.. +.+..++|++++|+..+.++.+++.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 3689999999983 35679999999999998887767666654 3345689999999999999999998763
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.53 E-value=1.4e-07 Score=92.18 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=55.9
Q ss_pred CChHHHHHhHHhhhcCC-cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 55 KPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~-~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
.|++.|.+|+..++..+ -.+|+||+|+|||.+..-.+.+.+.. +.++|+++||..-++++.+.+....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhcC
Confidence 57899999999988655 47999999999998877666665543 4579999999999999999886543
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.52 E-value=1.1e-06 Score=85.31 Aligned_cols=69 Identities=22% Similarity=0.185 Sum_probs=55.6
Q ss_pred CCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015454 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (406)
Q Consensus 54 ~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (406)
..+++.|.+|+..++.+...++.||+|+|||.+....+...... .+.++++++||...+.++.+.+.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 46899999999998887788999999999998766544433321 3557999999999999999988764
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.1e-06 Score=87.28 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=56.1
Q ss_pred CCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 54 ~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
..|++.|.+|+..++.+.-.+|.||+|+|||.+....+...+.. .+.++++++||...+.++.+.+.+.+
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 35789999999999887778999999999997766544433321 24579999999999999999987753
No 99
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.47 E-value=9e-07 Score=84.60 Aligned_cols=123 Identities=22% Similarity=0.286 Sum_probs=80.4
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEE
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (406)
.+++.|.+++..+..++.+++.||+|+|||.+... +...+.. .+.++++++||...+..+.+.+.. ..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~-l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e~~~~-------~a-- 256 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKA-VADLAES--LGLEVGLCAPTGKAARRLGEVTGR-------TA-- 256 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHH-HHHHHHH--TTCCEEEEESSHHHHHHHHHHHTS-------CE--
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHH-HHHHHHh--cCCeEEEecCcHHHHHHhHhhhcc-------cH--
Confidence 68999999999999888999999999999966443 3333332 245799999999988877665421 00
Q ss_pred EECCcchHHhHHHHhcCCCEEEechHHHHHH----HHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEE
Q 015454 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDM----IKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (406)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~----l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i 210 (406)
.|..++... +.........+++||+||++.+.. ..+..+++.++...+++
T Consensus 257 ----------------------~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~~----~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 257 ----------------------STVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGD----ALMLSLLAAVPPGARVL 310 (574)
T ss_dssp ----------------------EEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCCH----HHHHHHHTTSCTTCEEE
T ss_pred ----------------------HHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCCH----HHHHHHHHhCcCCCEEE
Confidence 111111100 001112233578999999997643 35666777777777766
Q ss_pred EEEec
Q 015454 211 LISAT 215 (406)
Q Consensus 211 ~lSAT 215 (406)
++.-.
T Consensus 311 lvGD~ 315 (574)
T 3e1s_A 311 LVGDT 315 (574)
T ss_dssp EEECT
T ss_pred EEecc
Confidence 65444
No 100
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.45 E-value=8.1e-07 Score=83.04 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=51.6
Q ss_pred HHCCCCCChHHHHHhHHhhhcC-----CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHH
Q 015454 49 YQYGFEKPSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (406)
Q Consensus 49 ~~~~~~~l~~~Q~~~~~~i~~~-----~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (406)
....|..|++-|++++..++.. ..++|.|++|+|||.++.. +...+.... ...+++++||...+..+.+.+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~-~~~~l~~~~-~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKF-IIEALISTG-ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHH-HHHHHHHTT-CCCEEEEESSHHHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHH-HHHHHHhcC-CceEEEecCcHHHHHHHHhhh
Confidence 4457888999999999977542 3899999999999966544 444443322 236899999999888777655
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.43 E-value=2.1e-06 Score=85.11 Aligned_cols=69 Identities=22% Similarity=0.186 Sum_probs=55.2
Q ss_pred CCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015454 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (406)
Q Consensus 54 ~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (406)
..+++.|.+|+..++.+.-.++.||+|+|||.+..-.+...+ .. .+.++++++||...+.++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~-~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLA-RQ-GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHH-TT-CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHH-Hc-CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 357899999999988877889999999999977655443333 21 3557999999999999999988764
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.23 E-value=1.9e-05 Score=68.42 Aligned_cols=123 Identities=19% Similarity=0.210 Sum_probs=87.6
Q ss_pred cccHHHHHHHHHhhcC--CcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCccc
Q 015454 256 EEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWA 333 (406)
Q Consensus 256 ~~~~~~~l~~~~~~~~--~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~ 333 (406)
...|+..|..++.... +.+++||++..+..+.+.+.+...++++..+.|.....++ + -.++...+.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-A----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-h----cccCCceEEEEECCCC
Confidence 4458888888876554 3599999999999999999999999999999998544321 1 1234555555566666
Q ss_pred CCCC-----CCCCCEEEEecCCCChhhh-HhhhhhccCC--C--CceeEEEEeccCcHHH
Q 015454 334 RGLD-----VQQVSLVINYDLPNNRELY-IHRIGRSGRF--G--RKGVAINFVKNDDIKI 383 (406)
Q Consensus 334 ~G~d-----~~~~~~vi~~~~~~s~~~~-~Q~~GR~~R~--~--~~~~~~~~~~~~~~~~ 383 (406)
-|+| +..++.||.+++.|++..= +|++-|+.|. | ++-.++.++.....++
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 6675 6789999999999999885 9999999997 3 3456777777655444
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.59 E-value=0.00077 Score=60.61 Aligned_cols=70 Identities=13% Similarity=0.112 Sum_probs=54.3
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
.|+|||...+..+...+.+++..+-+.|||.+....++..+.. .++..++++.|+..-+..+.+.+..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 6899999999877555668999999999998776666554333 245679999999999888777766543
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.46 E-value=0.00034 Score=63.71 Aligned_cols=106 Identities=20% Similarity=0.094 Sum_probs=63.8
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCC
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGV 152 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (406)
.++.|+.|+|||..+.-.+ .. ...++++|+++++.++.+.+.+.+.. ...
T Consensus 164 ~~I~G~aGsGKTt~I~~~~----~~----~~~lVlTpT~~aa~~l~~kl~~~~~~----------------------~~~ 213 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRV----NF----EEDLILVPGRQAAEMIRRRANASGII----------------------VAT 213 (446)
T ss_dssp EEEEECTTSCHHHHHHHHC----CT----TTCEEEESCHHHHHHHHHHHTTTSCC----------------------CCC
T ss_pred EEEEcCCCCCHHHHHHHHh----cc----CCeEEEeCCHHHHHHHHHHhhhcCcc----------------------ccc
Confidence 6899999999997543322 11 24699999999999999888542100 112
Q ss_pred CEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEec
Q 015454 153 HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (406)
Q Consensus 153 ~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 215 (406)
..-+.|.++++. ..........+++|+||+-.+ .. ..+..+....+. .+++++.-+
T Consensus 214 ~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~~---~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 214 KDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-HT---GCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp TTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-CH---HHHHHHHHHTTC-SEEEEEECT
T ss_pred cceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-CH---HHHHHHHHhCCC-CEEEEecCc
Confidence 334678777653 122222234789999999854 22 233344444443 555555444
No 105
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.40 E-value=0.0002 Score=70.34 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=56.8
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc-CCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
.|++-|.+++... +.+++|.|+.|||||.+..--+...+.. +....++|+++.|+..+.++.+++.+..
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 5789999999863 5789999999999998887766666644 3345679999999999999999998764
No 106
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.35 E-value=0.0016 Score=62.64 Aligned_cols=146 Identities=12% Similarity=0.178 Sum_probs=86.3
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcc--eeE
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN--IQA 132 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~--~~~ 132 (406)
.|++||...+..+...+..++..+-|+|||.+....++..+... ++..++++.|+...+..+.+.++....... +..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~ 241 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQP 241 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhcc
Confidence 58999999998875567789999999999987765555444333 355799999999999998887776543321 110
Q ss_pred EEE-ECCcchHHhHHHHhcCCCEEEec--hHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCC--CCc
Q 015454 133 HAC-VGGKSVGEDIRKLEHGVHVVSGT--PGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP--PDL 207 (406)
Q Consensus 133 ~~~-~~~~~~~~~~~~~~~~~~iii~T--~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~--~~~ 207 (406)
... ...... .+.++..|.+.+ |..+.. .+.+++|+||+|...+. ...+..+...+. ..+
T Consensus 242 ~~~~~~~~~i-----~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~~~~~ 305 (592)
T 3cpe_A 242 GIVEWNKGSI-----ELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNF--HDSWLAIQPVISSGRRS 305 (592)
T ss_dssp CEEEECSSEE-----EETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTTH--HHHHHHHHHHHSSSSCC
T ss_pred ccccCCccEE-----EecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCch--hHHHHHHHHHhccCCCc
Confidence 000 011000 012344444433 333321 13678999999986442 233334433332 234
Q ss_pred eEEEEEecCCh
Q 015454 208 QVVLISATLPH 218 (406)
Q Consensus 208 ~~i~lSAT~~~ 218 (406)
+ +++..|+..
T Consensus 306 ~-ii~isTP~~ 315 (592)
T 3cpe_A 306 K-IIITTTPNG 315 (592)
T ss_dssp E-EEEEECCCT
T ss_pred e-EEEEeCCCC
Confidence 4 444556543
No 107
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.24 E-value=0.00058 Score=67.49 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=56.9
Q ss_pred CCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc-CCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015454 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAI 124 (406)
Q Consensus 54 ~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~-~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (406)
..|++-|++++.+ ....++|.|+.|||||.+...-+.+.+.. +....++|+++.|+..+.++.+++.+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 3689999999986 35689999999999998887777766653 334567999999999999999998775
No 108
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.11 E-value=0.00084 Score=70.35 Aligned_cols=106 Identities=17% Similarity=0.162 Sum_probs=72.4
Q ss_pred CChHHHHHhHHhhhcCCcEEEECCCCCChhhHhHHHHHhhhccCC---CceeEEEEcCcHHHHHHHHHHHHHhccCccee
Q 015454 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---REVQALILSPTRELATQTEKVILAIGDFINIQ 131 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (406)
.+++-|.+++..- +++++|.|+.|||||.+.+--+...+..+. ...+++++++|++.+.++.+++.......-..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~~ 87 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELVQ 87 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHhhc
Confidence 6899999999854 789999999999999988877777776543 45689999999999999999987633110000
Q ss_pred EEEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHc
Q 015454 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR 168 (406)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~ 168 (406)
.............-..+-|+|...|...+..
T Consensus 88 ------~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~ 118 (1232)
T 3u4q_A 88 ------RPGSLHIRRQLSLLNRASISTLHSFCLQVLK 118 (1232)
T ss_dssp ------STTCHHHHHHHHHTTTSEEECHHHHHHHHHH
T ss_pred ------CcchHHHHHHHhccCCCeEEeHHHHHHHHHH
Confidence 0000111111122245678998888654433
No 109
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.09 E-value=0.0012 Score=58.66 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=26.3
Q ss_pred ChHHHHHhHHhhhc----CC---cEEEECCCCCChhhHhHHH
Q 015454 56 PSAIQQRAVMPIIK----GR---DVIAQAQSGTGKTSMIALT 90 (406)
Q Consensus 56 l~~~Q~~~~~~i~~----~~---~~il~~~tGsGKT~~~~~~ 90 (406)
++|||.+++..+.. |+ ..++.||+|+|||..+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHH
Confidence 57899988876643 32 3899999999999665543
No 110
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.08 E-value=0.0015 Score=52.23 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=16.5
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.|+.+++.||+|+|||..+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36789999999999996544
No 111
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.96 E-value=0.00042 Score=53.57 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=17.2
Q ss_pred cCCcEEEECCCCCChhhHhHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~ 89 (406)
.+..+++.||+|+|||..+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 678899999999999965443
No 112
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.94 E-value=0.0035 Score=51.78 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=60.7
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHh
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (406)
|.-.++.|++|+|||..++-.+...... +.+++++.|...-. . ...+....++..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~---g~kVli~~~~~d~r---~--~~~i~srlG~~~----------------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA---DVKYLVFKPKIDTR---S--IRNIQSRTGTSL----------------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCCGG---G--CSSCCCCCCCSS-----------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEEeccCch---H--HHHHHHhcCCCc-----------------
Confidence 4457889999999997766555544433 44688887754210 0 001111111100
Q ss_pred cCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEec
Q 015454 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (406)
Q Consensus 150 ~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 215 (406)
..+-+.+.+.++..+.... ....+++||+||++.+... ....+..+.+. +.+ +++++-
T Consensus 67 --~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~~~-~ve~l~~L~~~---gi~-Vil~Gl 124 (223)
T 2b8t_A 67 --PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFDDR-ICEVANILAEN---GFV-VIISGL 124 (223)
T ss_dssp --CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSCTH-HHHHHHHHHHT---TCE-EEEECC
T ss_pred --cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCcHH-HHHHHHHHHhC---CCe-EEEEec
Confidence 1233566667776665432 2345799999999975332 22334343332 444 445554
No 113
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.91 E-value=0.0011 Score=53.22 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=26.5
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~ 111 (406)
|.-.++.||+|+|||..++-.+...... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG---KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT---TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeecc
Confidence 4557899999999997765544443322 34688888864
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.84 E-value=0.0054 Score=54.18 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=22.2
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEc
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~ 108 (406)
+..+++.||+|+|||..+-. +...+... +..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~~~~--~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEAKKR--GYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHHHHT--TCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHC--CCEEEEEE
Confidence 35799999999999965443 33333222 23355554
No 115
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0046 Score=54.06 Aligned_cols=25 Identities=8% Similarity=0.084 Sum_probs=18.6
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhh
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTV 95 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~ 95 (406)
+.++++.||+|+|||.+.-. ++..+
T Consensus 45 ~~~lli~GpPGTGKT~~v~~-v~~~L 69 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVND-VMDEL 69 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHH-HHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHH
Confidence 46799999999999965554 44444
No 116
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.74 E-value=0.012 Score=48.42 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=24.8
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEe
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 214 (406)
....+|++||+|.+.... ...+..++...+....+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTADA-QAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHHH-HHHHHHHHHhcCCCCeEEEEeC
Confidence 456799999999875432 3345555555555555555443
No 117
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.73 E-value=0.0053 Score=56.74 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=23.1
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcC
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P 109 (406)
..+++.||+|+|||..+-. +...+....++..++++..
T Consensus 131 ~~lll~Gp~G~GKTtLa~a-ia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQS-IGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp CCEEEECSSSSSHHHHHHH-HHHHHHHHCCSSCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHhCCCCeEEEeeH
Confidence 5799999999999965443 4443332222344555543
No 118
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.73 E-value=0.0018 Score=52.16 Aligned_cols=39 Identities=10% Similarity=0.109 Sum_probs=27.3
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~ 111 (406)
|+=.++.||+|+|||..++-.+.+... .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~---~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKI---AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEecc
Confidence 444688999999999776655554432 245689998864
No 119
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.69 E-value=0.0031 Score=51.38 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=27.1
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
+=.++.|++|+|||..++-.+.+.... +.+++++.|...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEeccC
Confidence 335789999999997776665555433 456899998664
No 120
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.61 E-value=0.013 Score=53.01 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.1
Q ss_pred CCcEEEECCCCCChhhHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~ 89 (406)
+..+++.||+|+|||..+-.
T Consensus 44 ~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 46799999999999965443
No 121
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.48 E-value=0.007 Score=49.79 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=28.8
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
|+=.++.|++|+|||..++-.+.+... .+.+++++-|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~---~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT---TTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH---CCCeEEEEeecCC
Confidence 445688999999999777666555543 3456899988653
No 122
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.38 E-value=0.0074 Score=48.31 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=27.4
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCc
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~ 110 (406)
++=.++.||+|+|||.-.+-.+-+.... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEccc
Confidence 4557899999999996655555554433 3568999885
No 123
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.34 E-value=0.0079 Score=54.48 Aligned_cols=36 Identities=31% Similarity=0.539 Sum_probs=22.1
Q ss_pred eeecchhhHHhccCcHHH-HHHHHHhCCCCceEEEEEe
Q 015454 178 LLVLDESDEMLSRGFKDQ-IYDVYRYLPPDLQVVLISA 214 (406)
Q Consensus 178 ~vV~DE~h~~~~~~~~~~-~~~~~~~~~~~~~~i~lSA 214 (406)
+||+||+|.+........ +..+.+.. ....+++.|.
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~ 172 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISN 172 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEEC
Confidence 999999999876542344 55555544 3444444433
No 124
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.33 E-value=0.0042 Score=47.48 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=15.8
Q ss_pred hcCCcEEEECCCCCChhhH
Q 015454 68 IKGRDVIAQAQSGTGKTSM 86 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~ 86 (406)
..+.++++.||+|+|||..
T Consensus 25 ~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp TCSSCEEEEEETTCCHHHH
T ss_pred CCCCcEEEECCCCccHHHH
Confidence 3457899999999999953
No 125
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.22 E-value=0.012 Score=56.54 Aligned_cols=112 Identities=15% Similarity=0.245 Sum_probs=72.0
Q ss_pred CChHHHHHhHHhhhc--CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeE
Q 015454 55 KPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (406)
Q Consensus 55 ~l~~~Q~~~~~~i~~--~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (406)
.++.-|.+++..+.. ....++.|+-|.|||.+.-+.+.. +.. .+++.+|+.+-+....+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~~-----~~~vtAP~~~a~~~l~~~~~~--------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IAG-----RAIVTAPAKASTDVLAQFAGE--------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SSS-----CEEEECSSCCSCHHHHHHHGG---------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HHh-----CcEEECCCHHHHHHHHHHhhC---------
Confidence 678999999998876 345799999999999554444333 321 369999988766654443211
Q ss_pred EEEECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEE
Q 015454 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (406)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~l 212 (406)
.+-+..|+.+... ....+++|||||=.+ -...+..+...++ .+++
T Consensus 240 --------------------~i~~~~Pd~~~~~-------~~~~dlliVDEAAaI----p~pll~~ll~~~~----~v~~ 284 (671)
T 2zpa_A 240 --------------------KFRFIAPDALLAS-------DEQADWLVVDEAAAI----PAPLLHQLVSRFP----RTLL 284 (671)
T ss_dssp --------------------GCCBCCHHHHHHS-------CCCCSEEEEETGGGS----CHHHHHHHHTTSS----EEEE
T ss_pred --------------------CeEEeCchhhhhC-------cccCCEEEEEchhcC----CHHHHHHHHhhCC----eEEE
Confidence 1233466654321 234799999999765 2345555555332 5778
Q ss_pred EecC
Q 015454 213 SATL 216 (406)
Q Consensus 213 SAT~ 216 (406)
|.|.
T Consensus 285 ~tTv 288 (671)
T 2zpa_A 285 TTTV 288 (671)
T ss_dssp EEEB
T ss_pred EecC
Confidence 8886
No 126
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.18 E-value=0.026 Score=45.82 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=17.8
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhh
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTV 95 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~ 95 (406)
.++++.||+|+|||..+.. +...+
T Consensus 55 ~~~~l~G~~GtGKT~la~~-i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA-IANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH-HHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHH
Confidence 6799999999999965443 44433
No 127
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.15 E-value=0.0092 Score=49.92 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=16.4
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.+..+++.||+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999996544
No 128
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.12 E-value=0.041 Score=47.07 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=15.2
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
.++++.||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999996554
No 129
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.08 E-value=0.0063 Score=49.45 Aligned_cols=40 Identities=10% Similarity=0.167 Sum_probs=26.4
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
|.=.++.||+|+|||..++-.+.+.... +.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~---g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYA---KQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc---CCceEEEEeccC
Confidence 3446889999999997666554443322 356899998654
No 130
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.08 E-value=0.029 Score=50.64 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=15.7
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
+..+++.||+|+|||..+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999996544
No 131
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.96 E-value=0.0098 Score=53.90 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=14.6
Q ss_pred cEEEECCCCCChhhHhH
Q 015454 72 DVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~ 88 (406)
.+++.||+|+|||..+-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999996554
No 132
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.92 E-value=0.021 Score=50.29 Aligned_cols=39 Identities=15% Similarity=0.404 Sum_probs=24.5
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
....++|+||+|.+.... ...+...++..+....+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEEe
Confidence 457899999999875433 334455555555555555543
No 133
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.91 E-value=0.05 Score=46.83 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=32.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhh--hcCCcEEEECCCCCChhhHhH
Q 015454 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPI--IKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 32 ~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i--~~~~~~il~~~tGsGKT~~~~ 88 (406)
...|+++.-.+..++.+...-. ......+.+..+ ....++++.||+|+|||..+-
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE--LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH--HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH--HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 4567887777777777764211 001111222222 345679999999999996543
No 134
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.85 E-value=0.075 Score=47.34 Aligned_cols=42 Identities=5% Similarity=0.349 Sum_probs=27.5
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEecC
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 216 (406)
...+++|+||+|.+ +......+...++..++...+++.|-.+
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 45789999999984 4434455666666666666666665544
No 135
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.81 E-value=0.0072 Score=52.93 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.3
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
.++++.||+|+|||..+-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999996554
No 136
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.69 E-value=0.04 Score=43.78 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.1
Q ss_pred CCcEEEECCCCCChhhHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~ 89 (406)
..++++.||+|+|||..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 45799999999999965543
No 137
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.52 E-value=0.017 Score=50.90 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=24.7
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEec
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 215 (406)
...+++++||+|.+........+..+++..+...++++ +++
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~-~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIII-TAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEE-EES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEE-EeC
Confidence 35789999999988622233445555555444555555 444
No 138
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.45 E-value=0.052 Score=48.19 Aligned_cols=39 Identities=21% Similarity=0.449 Sum_probs=25.6
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
...+++|+||+|.+.... ...+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 347899999999875432 345556666666566555443
No 139
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.45 E-value=0.093 Score=42.02 Aligned_cols=140 Identities=16% Similarity=0.196 Sum_probs=69.0
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH-HHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE-LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (406)
...+++..++|.|||.+++-..+..+..+ .+++++-=.+. ....-...+..+ .+.+.....+-.........
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G---~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG---KNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT---CCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcHH
Confidence 35799999999999998888777777554 45777732221 000111122222 12222211110000000000
Q ss_pred hcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCc--HHHHHHHHHhCCCCceEEEEEecCChHHHHH
Q 015454 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEM 223 (406)
Q Consensus 149 ~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~ 223 (406)
+. ......+..... .+....+++||+||+-.....++ .+.+..++...+....+|+.+-.+++++.+.
T Consensus 101 ----~~--~~a~~~l~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 101 ----DT--AACMAVWQHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp ----HH--HHHHHHHHHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred ----HH--HHHHHHHHHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 00 000111222222 23346689999999987655442 3456667776666655555444455554443
No 140
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.38 E-value=0.027 Score=50.19 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=25.2
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEe
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 214 (406)
....++++||+|.+.... ...+...++..+...++++.+.
T Consensus 132 ~~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEeC
Confidence 346799999999875433 3445555666555555665443
No 141
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.19 E-value=0.05 Score=47.36 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=25.4
Q ss_pred cCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
....+++|+||+|.+.... ...+...++.-++...+++.|
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 3457899999999885443 334555566545555555554
No 142
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.08 E-value=0.039 Score=48.38 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=23.4
Q ss_pred CcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 175 ~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
...+||+||+|.+.... ...+...++..+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 47899999999875432 233444555555555555544
No 143
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.03 E-value=0.19 Score=41.68 Aligned_cols=17 Identities=29% Similarity=0.428 Sum_probs=14.3
Q ss_pred cEEEECCCCCChhhHhH
Q 015454 72 DVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~ 88 (406)
.+++.||+|+|||..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999996544
No 144
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.71 E-value=0.088 Score=48.07 Aligned_cols=51 Identities=14% Similarity=0.409 Sum_probs=31.8
Q ss_pred CCcceeecchhhHHh---ccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHH
Q 015454 174 RAIKLLVLDESDEML---SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMT 224 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~---~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~ 224 (406)
..++++|+|++.... +......+..+.....+..-++.++|+.........
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a 231 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA 231 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH
Confidence 457899999997543 222344555555555566667888888765444433
No 145
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.65 E-value=0.083 Score=52.27 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=64.7
Q ss_pred CcceEEEecchhhHHHHHHHHh----cCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-ccCCCCCCCCCEEEE
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMR----GYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-WARGLDVQQVSLVIN 346 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~~~G~d~~~~~~vi~ 346 (406)
+.++++.++++.-+...++.+. ..++.+..++|+++..++...++.+.+|+.+|+|+|.. +...+++.++..||+
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 3689999999988877766654 44789999999999999999999999999999999974 445677888888876
Q ss_pred ecCC
Q 015454 347 YDLP 350 (406)
Q Consensus 347 ~~~~ 350 (406)
-...
T Consensus 497 DEaH 500 (780)
T 1gm5_A 497 DEQH 500 (780)
T ss_dssp ESCC
T ss_pred cccc
Confidence 5443
No 146
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.48 E-value=0.098 Score=43.76 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=32.2
Q ss_pred hcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015454 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (406)
..|.-+++.||+|+|||..+...+...... +.+++++.-.. ...+..+.+..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~-~~~~~~~~~~~~ 73 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEE-HPVQVRQNMAQF 73 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSS-CHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccC-CHHHHHHHHHHc
Confidence 345678999999999996655444443322 33567766432 345555555543
No 147
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.01 E-value=0.085 Score=46.66 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=15.3
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
.++++.||+|+|||..+-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 579999999999996544
No 148
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.88 E-value=0.093 Score=47.79 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=14.6
Q ss_pred CcEEE--ECCCCCChhhHhHH
Q 015454 71 RDVIA--QAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il--~~~tGsGKT~~~~~ 89 (406)
..+++ .||+|+|||..+..
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~ 71 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKF 71 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHH
Confidence 35778 89999999965443
No 149
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.72 E-value=0.25 Score=44.98 Aligned_cols=79 Identities=13% Similarity=0.215 Sum_probs=64.4
Q ss_pred CCcceEEEecchhhHHHHHHHHhc---CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCccc----CCCCCCCCCE
Q 015454 271 TITQAVIFCNTKRKVDWLTEKMRG---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWA----RGLDVQQVSL 343 (406)
Q Consensus 271 ~~~k~lif~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~----~G~d~~~~~~ 343 (406)
...++||.+|++.-+..+++.++. .++.+..++|+.+..++....+.+..++.+|+|+|+..- .-++...+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 446899999999999999998887 578999999999999988888899999999999996321 1245567788
Q ss_pred EEEecC
Q 015454 344 VINYDL 349 (406)
Q Consensus 344 vi~~~~ 349 (406)
+|+-+.
T Consensus 143 iViDEa 148 (414)
T 3oiy_A 143 VFVDDV 148 (414)
T ss_dssp EEESCH
T ss_pred EEEeCh
Confidence 876544
No 150
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.48 E-value=0.047 Score=47.81 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.5
Q ss_pred cEEEECCCCCChhhHhH
Q 015454 72 DVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~ 88 (406)
++++.||+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999996544
No 151
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.33 E-value=0.23 Score=44.48 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=23.2
Q ss_pred cCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEE
Q 015454 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 213 (406)
.....++|+||+|.+.... ...+...++..+....+++.|
T Consensus 117 ~~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEE
T ss_pred cCCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 3456799999999875433 234444555544444444443
No 152
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.58 E-value=0.23 Score=45.74 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.0
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
.++++.||+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 468999999999996544
No 153
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.43 E-value=0.18 Score=46.57 Aligned_cols=49 Identities=22% Similarity=0.093 Sum_probs=29.2
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (406)
|.-+++.|++|+|||..++-.+.+..... +.+++|+..- .-..|+..++
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE-~~~~~l~~R~ 248 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLE-MPAAQLTLRM 248 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESS-SCHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECC-CCHHHHHHHH
Confidence 45589999999999965554444433221 3457777653 2234555544
No 154
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.40 E-value=0.22 Score=46.09 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=29.4
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (406)
.|.-+++.|++|+|||..++-.+....... +.+++|+..-.. ..++..++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~s-~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEMS-AQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSSC-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCCC-HHHHHHHH
Confidence 355689999999999965554444333222 335777765322 24444443
No 155
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.37 E-value=1 Score=41.17 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=21.7
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEc
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~ 108 (406)
-+++.+++|+|||....-.+.. +.. .+.+++++.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~-l~~--~G~kVllv~ 135 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARY-FQK--RGYKVGVVC 135 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH-HHT--TTCCEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHHH-HHH--CCCeEEEEe
Confidence 3789999999999766654433 322 234555555
No 156
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.35 E-value=0.067 Score=46.36 Aligned_cols=90 Identities=9% Similarity=0.094 Sum_probs=50.9
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcC
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (406)
-+.+.+|+|+|||...+-.+.+.... ..+.+++|+..-.++... .+++++-..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~~~~---ra~~lGvd~----------------------- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGITPA---YLRSMGVDP----------------------- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCCCHH---HHHHTTCCG-----------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchhhHH---HHHHhCCCH-----------------------
Confidence 57899999999997666555444432 224568888775554332 244443221
Q ss_pred CCEEEechHHHHHH----HHc-cCCCcCCcceeecchhhHHh
Q 015454 152 VHVVSGTPGRVCDM----IKR-KTLRTRAIKLLVLDESDEML 188 (406)
Q Consensus 152 ~~iii~T~~~l~~~----l~~-~~~~~~~~~~vV~DE~h~~~ 188 (406)
.++++..|..+... +.. .......+++||+|-+..+.
T Consensus 83 d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 13444443332222 111 11233468999999998775
No 157
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=92.32 E-value=1.6 Score=30.20 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=73.7
Q ss_pred eEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcc--cCCC-----CCCCCCEEEEe
Q 015454 275 AVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVW--ARGL-----DVQQVSLVINY 347 (406)
Q Consensus 275 ~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~--~~G~-----d~~~~~~vi~~ 347 (406)
.++|.+..+....+...++..|..+..++++.+.+.|.+-++.|.....++--.-+.- .+.+ -.|.++.|++.
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvviv 84 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIV 84 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 3567777788888999999999999999999999999999999976665553322210 0111 14777877776
Q ss_pred cCCCC--hhhhHhh-hhhccCCCCceeEEEEeccCcHHHHHHHHHHHcccc
Q 015454 348 DLPNN--RELYIHR-IGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQI 395 (406)
Q Consensus 348 ~~~~s--~~~~~Q~-~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
..... ..+|+.- .-|. -.+++++++.|-+..+...+.+..+.
T Consensus 85 ttddkewikdfieeakerg------vevfvvynnkdddrrkeaqqefrsdg 129 (162)
T 2l82_A 85 TTDDKEWIKDFIEEAKERG------VEVFVVYNNKDDDRRKEAQQEFRSDG 129 (162)
T ss_dssp ECCCHHHHHHHHHHHHHTT------CEEEEEEECSCHHHHHHHHHHHCCSS
T ss_pred ecCcHHHHHHHHHHHHhcC------cEEEEEecCCCchhHHHHHHHhhhcC
Confidence 53311 1222222 1221 35667777777777677776665544
No 158
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.25 E-value=0.29 Score=45.66 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=26.1
Q ss_pred cceeecchhhHHhccC----------cHHHHHHHHHhCCCCceEEEEEecCCh
Q 015454 176 IKLLVLDESDEMLSRG----------FKDQIYDVYRYLPPDLQVVLISATLPH 218 (406)
Q Consensus 176 ~~~vV~DE~h~~~~~~----------~~~~~~~~~~~~~~~~~~i~lSAT~~~ 218 (406)
..+|++||+|.+.... ....+..++........++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 4689999999886532 112334445544455567777777444
No 159
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=91.99 E-value=0.24 Score=51.81 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=35.1
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHH
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (406)
-+|.|+.|||||.+.+--+...+..+..+.++|++||...-- ++.+++
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TF-t~~~rl 51 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTF-LMEYEL 51 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHH-HHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccH-HHHHHH
Confidence 378999999999988887777776655567899999965432 244444
No 160
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.94 E-value=0.14 Score=42.95 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=17.9
Q ss_pred hhcCCcEEEECCCCCChhhHhHH
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~~ 89 (406)
+..|.-+.+.||+|+|||..+..
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHH
Confidence 44567799999999999965543
No 161
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.86 E-value=0.064 Score=48.95 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=36.7
Q ss_pred cccccccccCCCCHHHHHHHHHC---CCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHh
Q 015454 29 VEAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 29 ~~~~~~~~~~~l~~~i~~~l~~~---~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~ 87 (406)
..+..+|++.+-.+..++.+... .+..|..|+..- +...+.+++.||+|+|||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHHH
Confidence 45677899999888888887652 111222222221 122467999999999999644
No 162
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.64 E-value=0.16 Score=38.51 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=16.7
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.+.++++.||+|+|||..+-
T Consensus 23 ~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 45789999999999996554
No 163
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.99 E-value=0.65 Score=37.90 Aligned_cols=74 Identities=12% Similarity=0.326 Sum_probs=54.4
Q ss_pred cceEEEecchhhHHHHHHHHhcC-----CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-c-----cCCCCCCCC
Q 015454 273 TQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-W-----ARGLDVQQV 341 (406)
Q Consensus 273 ~k~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~-----~~G~d~~~~ 341 (406)
.++||.+++++.+..+.+.++.. +..+..++|+.+...... .+..+..+|+|+|+. + ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999988888777653 678999999987665443 344567899999952 1 234677788
Q ss_pred CEEEEecC
Q 015454 342 SLVINYDL 349 (406)
Q Consensus 342 ~~vi~~~~ 349 (406)
+++|+-+.
T Consensus 160 ~~lViDEa 167 (220)
T 1t6n_A 160 KHFILDEC 167 (220)
T ss_dssp CEEEEESH
T ss_pred CEEEEcCH
Confidence 88886543
No 164
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.97 E-value=1.5 Score=36.59 Aligned_cols=75 Identities=9% Similarity=0.224 Sum_probs=53.7
Q ss_pred CCcceEEEecchhhHHHHHHHHhcC----CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-----c--cCCCCCC
Q 015454 271 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----W--ARGLDVQ 339 (406)
Q Consensus 271 ~~~k~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~--~~G~d~~ 339 (406)
...++||.++++..+..+++.++.. ++.+..++|+.+.......+ .+..+|+|+|+- + ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3457999999999888887776553 77888999988766544332 357899999952 1 1456778
Q ss_pred CCCEEEEecC
Q 015454 340 QVSLVINYDL 349 (406)
Q Consensus 340 ~~~~vi~~~~ 349 (406)
.++++|+-+.
T Consensus 186 ~~~~lViDEa 195 (249)
T 3ber_A 186 ALKYLVMDEA 195 (249)
T ss_dssp TCCEEEECSH
T ss_pred ccCEEEEcCh
Confidence 8888886443
No 165
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.92 E-value=6.8 Score=34.24 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=29.4
Q ss_pred hHHHHHHHHccCCCcCCcceeecchhhHHhc---cCcHHHHHHHHHhCCCCceEEEEEecC
Q 015454 159 PGRVCDMIKRKTLRTRAIKLLVLDESDEMLS---RGFKDQIYDVYRYLPPDLQVVLISATL 216 (406)
Q Consensus 159 ~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~---~~~~~~~~~~~~~~~~~~~~i~lSAT~ 216 (406)
...+...+..... ..-+||+||+|.+.. ..+...+..+.... ++.. ++++++.
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~i~~g~~ 179 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIK-FIMSGSE 179 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEE-EEEEESS
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeE-EEEEcCc
Confidence 4445555543211 245899999999864 34555565555543 2343 4455553
No 166
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.60 E-value=1.2 Score=46.32 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=70.7
Q ss_pred EEEEecccccHHHHHH-HHH-hhcCCcceEEEecchhhHHHHHHHHhc----CCceEEEeecCCCHHHHHHHHHHHhcCC
Q 015454 249 FFVAVEREEWKFDTLC-DLY-DTLTITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGT 322 (406)
Q Consensus 249 ~~~~~~~~~~~~~~l~-~~~-~~~~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 322 (406)
.....+....|..... ..+ ....+.+++|.+++...+...++.+.+ .++.+..+++..+..++...++.+..|+
T Consensus 627 ~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~ 706 (1151)
T 2eyq_A 627 RLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK 706 (1151)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 4444455555553322 121 222346899999999888777777653 4678999999999999999999999999
Q ss_pred CcEEEEcC-cccCCCCCCCCCEEEE
Q 015454 323 TRVLITTD-VWARGLDVQQVSLVIN 346 (406)
Q Consensus 323 ~~vli~t~-~~~~G~d~~~~~~vi~ 346 (406)
.+|+|+|. .+...+.+.++..||+
T Consensus 707 ~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 707 IDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCEEEECHHHHhCCccccccceEEE
Confidence 99999996 4445577777777775
No 167
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.34 E-value=0.52 Score=48.72 Aligned_cols=79 Identities=13% Similarity=0.203 Sum_probs=64.5
Q ss_pred CCcceEEEecchhhHHHHHHHHhc---CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-ccC---CCCCCCCCE
Q 015454 271 TITQAVIFCNTKRKVDWLTEKMRG---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-WAR---GLDVQQVSL 343 (406)
Q Consensus 271 ~~~k~lif~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~~~---G~d~~~~~~ 343 (406)
...++||.+|+++-+..+++.++. .++.+..+||+.+..++....+.+..|+.+|+|+|+- +.. -+++.++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 346899999999999999999988 5678999999999988888899999999999999963 211 145567888
Q ss_pred EEEecC
Q 015454 344 VINYDL 349 (406)
Q Consensus 344 vi~~~~ 349 (406)
+|+-+.
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 887544
No 168
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.03 E-value=0.7 Score=43.31 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=28.2
Q ss_pred HHHHCCCCCChHHHHHhHH-hhhcCCcEEEECCCCCChhhHhHHHHHhhh
Q 015454 47 GIYQYGFEKPSAIQQRAVM-PIIKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (406)
Q Consensus 47 ~l~~~~~~~l~~~Q~~~~~-~i~~~~~~il~~~tGsGKT~~~~~~i~~~~ 95 (406)
.+...|. +.+.+.+.+. .+..|..+++.||||||||... ..++..+
T Consensus 238 ~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i 284 (511)
T 2oap_1 238 DLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFI 284 (511)
T ss_dssp HHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGS
T ss_pred hHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 3444453 3444444443 3556888999999999999543 3344444
No 169
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.86 E-value=0.47 Score=43.18 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=23.4
Q ss_pred HHHHHhHHhhhc--CCcEEEECCCCCChhhHhHHHHHhhh
Q 015454 58 AIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTV 95 (406)
Q Consensus 58 ~~Q~~~~~~i~~--~~~~il~~~tGsGKT~~~~~~i~~~~ 95 (406)
+-+..++..+.. +.-+++.||||||||.... .++..+
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~-allg~l 191 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLY-AGLQEL 191 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHH-HHHhhc
Confidence 344555555443 4457999999999995433 344444
No 170
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.49 E-value=0.78 Score=43.26 Aligned_cols=59 Identities=10% Similarity=0.182 Sum_probs=54.8
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD 330 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~ 330 (406)
.+++||.++++.-+....+.|...++.+..+++..+..++..+...+..|..+++++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 36899999999999999999999999999999999999999999999999999999996
No 171
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.42 E-value=0.33 Score=39.43 Aligned_cols=32 Identities=25% Similarity=0.213 Sum_probs=26.3
Q ss_pred hHHHHHhHHhhhcCCcEEEECCCCCChhhHhH
Q 015454 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~ 88 (406)
+..|..++..+..|.-+.+.||.|+|||..+-
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 45577888888889999999999999995443
No 172
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.34 E-value=0.2 Score=45.12 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=34.4
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHH-HhHHh--hhcCCcEEEECCCCCChhhHh
Q 015454 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQ-RAVMP--IIKGRDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 30 ~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~-~~~~~--i~~~~~~il~~~tGsGKT~~~ 87 (406)
.|..+|++.+=-+..++.+...= ..|... +.+.. +...+.+++.||+|+|||+.+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v---~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVI---ELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHT---HHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHH---HHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 35578999886677777776531 122221 22222 222467999999999999644
No 173
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=89.33 E-value=0.59 Score=48.88 Aligned_cols=54 Identities=20% Similarity=0.143 Sum_probs=43.7
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccC---------CCceeEEEEcCcHHHHHHHHHHHHHh
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTS---------SREVQALILSPTRELATQTEKVILAI 124 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~---------~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (406)
...+|.|+.|||||.+...-++..+... -...++|+|+=|++-+.++.+++.+.
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 3459999999999998888788777532 23457999999999999999988754
No 174
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.04 E-value=0.29 Score=44.66 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=33.8
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHH-HHhHHh--hhcCCcEEEECCCCCChhhHhH
Q 015454 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQ-QRAVMP--IIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 30 ~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q-~~~~~~--i~~~~~~il~~~tGsGKT~~~~ 88 (406)
.+..+|++.+=-+..++.+...=. .|.. -+.+.. +...+.+++.||+|+|||+.+-
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~---~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIE---LPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHH---HHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHH
Confidence 456778888866777777654210 1111 122222 1224679999999999996543
No 175
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.01 E-value=0.17 Score=46.29 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=35.4
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHH-HHhHHhh--hcCCcEEEECCCCCChhhHh
Q 015454 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQ-QRAVMPI--IKGRDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 30 ~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q-~~~~~~i--~~~~~~il~~~tGsGKT~~~ 87 (406)
.+..+|++.+=-+..++.+...=. .|.. -+.+..+ ...+.+++.||+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 456789998877888888865311 1111 1233322 23477999999999999644
No 176
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.70 E-value=0.56 Score=46.41 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=14.6
Q ss_pred CcEEEECCCCCChhhHh
Q 015454 71 RDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~ 87 (406)
+.+++.||+|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999543
No 177
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.28 E-value=0.47 Score=47.78 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=15.5
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
.++++.||+|+|||..+-.
T Consensus 192 ~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CCCEEEECTTSCHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 5799999999999965443
No 178
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=88.23 E-value=0.58 Score=43.67 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=21.3
Q ss_pred hhcCCcEEEECCCCCChhhHhHHHHHhhhc
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~~~i~~~~~ 96 (406)
+.++.++++.|+||||||.+.-..+...+.
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344678999999999999665544444343
No 179
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=88.21 E-value=0.86 Score=43.65 Aligned_cols=59 Identities=5% Similarity=0.141 Sum_probs=53.7
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHH--hcCCCcEEEEcC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEF--RSGTTRVLITTD 330 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f--~~~~~~vli~t~ 330 (406)
.+++||.+|++.-++...+.|...|+.+..++|+.+..++..+...+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 46899999999999999999999999999999999999998888888 578899999997
No 180
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.21 E-value=0.96 Score=39.27 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=16.7
Q ss_pred CCcEEEECCCCCChhhHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~ 89 (406)
+.++++.||+|+|||..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999966543
No 181
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.20 E-value=0.19 Score=45.86 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=33.5
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHH-HHhHHh--hhcCCcEEEECCCCCChhhHhH
Q 015454 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQ-QRAVMP--IIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 30 ~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q-~~~~~~--i~~~~~~il~~~tGsGKT~~~~ 88 (406)
.+..+|++.+=-+..++.+...=. .|.. .+.+.. +...+.+++.||+|+|||+.+-
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~---~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVE---LPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHH---HHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHH
Confidence 455788888866777777654210 1111 122222 1234679999999999996443
No 182
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.75 E-value=0.19 Score=43.57 Aligned_cols=55 Identities=15% Similarity=0.282 Sum_probs=32.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHH-HHhHHh--hhcCCcEEEECCCCCChhhHhH
Q 015454 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQ-QRAVMP--IIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q-~~~~~~--i~~~~~~il~~~tGsGKT~~~~ 88 (406)
+...|+++.-.+...+.+...-. ++.. .+.+.. +..++.+++.||+|+|||..+-
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 34568887767777777654210 1111 011111 2345679999999999996544
No 183
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=87.54 E-value=2.8 Score=33.51 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=50.8
Q ss_pred cceEEEecchhhHHHHHHHHhcC-----CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-----ccC-CCCCCCC
Q 015454 273 TQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----WAR-GLDVQQV 341 (406)
Q Consensus 273 ~k~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~~~-G~d~~~~ 341 (406)
.++||.++++..+..+.+.+... +..+..++|+.+..+.... + .+..+|+|+|+. +.. .+++.++
T Consensus 72 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 147 (206)
T 1vec_A 72 IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDHV 147 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred eeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcccC
Confidence 57999999999888887777542 5678888988776543322 2 356789999962 222 3466778
Q ss_pred CEEEEecC
Q 015454 342 SLVINYDL 349 (406)
Q Consensus 342 ~~vi~~~~ 349 (406)
+.+|+-+.
T Consensus 148 ~~lViDEa 155 (206)
T 1vec_A 148 QMIVLDEA 155 (206)
T ss_dssp CEEEEETH
T ss_pred CEEEEECh
Confidence 88776443
No 184
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=87.47 E-value=2.3 Score=32.69 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=52.1
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHH---H-hcCCCEEEechHHHHHHHHccCCCcCCc
Q 015454 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---L-EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (406)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~iii~T~~~l~~~l~~~~~~~~~~ 176 (406)
+.++||+|+++..+....+.+... +..+..++++.+..++... + .....|+|+|. . ....+++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-~-----~~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-V-----AARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-G-----GTTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-h-----hhcCCchhcC
Confidence 457999999999999999988775 3677788888765554332 2 24478999993 2 2345677778
Q ss_pred ceeecchh
Q 015454 177 KLLVLDES 184 (406)
Q Consensus 177 ~~vV~DE~ 184 (406)
++||.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88776443
No 185
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.02 E-value=0.41 Score=52.04 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=28.4
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
+..+++.+|+|+|||..+...+.+... .+.+++|+.....
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccc
Confidence 578999999999999776655554443 3456777776433
No 186
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=86.47 E-value=0.99 Score=40.22 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=16.0
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
..++++.||+|+|||..+-
T Consensus 51 ~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999996554
No 187
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=86.29 E-value=0.91 Score=42.35 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=22.5
Q ss_pred HHHHHhHHhhhcCCcEEEECCCCCChhhHhH
Q 015454 58 AIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 58 ~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~ 88 (406)
..=..+...+..+.++++.||+|+|||..+-
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHHHH
Confidence 3334445556678999999999999995443
No 188
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=86.22 E-value=0.4 Score=37.62 Aligned_cols=121 Identities=11% Similarity=0.082 Sum_probs=71.9
Q ss_pred hHHHHHhHHhhhcC--CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEE
Q 015454 57 SAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (406)
Q Consensus 57 ~~~Q~~~~~~i~~~--~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (406)
.+-|..++..+... .-.++.++-|++|+...+-.+.....+ .|.++.+++|+..-.....+....-+
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~--~Gr~V~vLAp~~~s~~~l~~~~~l~~--------- 104 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE--QGREVQIIAADRRSQMNMKQDERLSG--------- 104 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH--TTCCEEEECSTTHHHHHHSCTTTCSS---------
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh--cCeEEEEEcCchHHHHHHHhhcCcCc---------
Confidence 46788888887653 457889999999997754444444333 35679999998876655444332111
Q ss_pred EECCcchHHhHHHHhcCCCEEEechHHHHHHHHccCCCcCCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEEEe
Q 015454 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (406)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 214 (406)
.+ ++. ..+......+..-+.+||||+..++.......+..... .+.|+|++--
T Consensus 105 ------------------~t-~t~-----~~ll~~~~~~tp~s~lIVD~AekLS~kE~~~Lld~A~~---~naqvvll~~ 157 (189)
T 2l8b_A 105 ------------------EL-ITG-----RRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAAR---HNVQVLITDS 157 (189)
T ss_dssp ------------------CS-SST-----TTTTTTSCCCCCCCEEEEEESSSHHHHHHHHHHHHHHH---TTCCEEEEES
T ss_pred ------------------ce-eeh-----hhhhcCCCCCCCCCEEEEechhhcCHHHHHHHHHHHHh---cCCEEEEeCC
Confidence 00 011 11222233234456899999998865543333333332 4577777765
Q ss_pred c
Q 015454 215 T 215 (406)
Q Consensus 215 T 215 (406)
+
T Consensus 158 ~ 158 (189)
T 2l8b_A 158 G 158 (189)
T ss_dssp S
T ss_pred c
Confidence 5
No 189
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.10 E-value=0.25 Score=44.73 Aligned_cols=56 Identities=20% Similarity=0.311 Sum_probs=34.6
Q ss_pred cccccccccCCCCHHHHHHHHHC---CCCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHh
Q 015454 29 VEAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 29 ~~~~~~~~~~~l~~~i~~~l~~~---~~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~ 87 (406)
..+..+|++.+=-+..++.+... .+..|--|+..-+ ...+.+++.||+|+|||+.+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 45667899988666777776542 1112222222211 22467999999999999644
No 190
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=86.08 E-value=3.6 Score=31.63 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=51.1
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH----hcCCCEEEechHHHHHHHHccCCCcCCc
Q 015454 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (406)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~l~~~~~~~~~~ 176 (406)
+.++||+++++.-+....+.+... +..+..++++.+..++...+ .....|+|+|. . ....+++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~-----~~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-L-----LARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-G-----GTTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-h-----hhcCCCcccC
Confidence 457999999999999999988774 35677888887655543322 24578999993 1 2345667777
Q ss_pred ceeecch
Q 015454 177 KLLVLDE 183 (406)
Q Consensus 177 ~~vV~DE 183 (406)
++||.-+
T Consensus 100 ~~Vi~~~ 106 (165)
T 1fuk_A 100 SLVINYD 106 (165)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 7776544
No 191
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=85.97 E-value=1.5 Score=37.71 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=15.9
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
..++++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999996544
No 192
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.97 E-value=0.65 Score=36.61 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=15.3
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
.++++.||+|+|||..+.
T Consensus 44 ~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CceEEECCCCCCHHHHHH
Confidence 679999999999996544
No 193
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=85.87 E-value=1.2 Score=41.41 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=54.7
Q ss_pred HHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcccCCCCCC
Q 015454 260 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ 339 (406)
Q Consensus 260 ~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 339 (406)
.+.+..+++.. +.++++.|.+...++.+.+.|.+.++........ . .+ ....|.|+...+..|+-+|
T Consensus 371 ~~~L~~~~~~~-~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~--~~g~v~i~~g~L~~GF~~p 437 (483)
T 3hjh_A 371 LDALRKFLETF-DGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EA--SDRGRYLMIGAAEHGFVDT 437 (483)
T ss_dssp THHHHHHHHHC-CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GC--CTTCEEEEESCCCSCEEET
T ss_pred HHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hc--CCCcEEEEEcccccCcccC
Confidence 45666666432 3689999999999999999999988765433221 0 11 2335777788899999999
Q ss_pred CCCEEEEec
Q 015454 340 QVSLVINYD 348 (406)
Q Consensus 340 ~~~~vi~~~ 348 (406)
..+.+++.+
T Consensus 438 ~~klaVITE 446 (483)
T 3hjh_A 438 VRNLALICE 446 (483)
T ss_dssp TTTEEEEEH
T ss_pred CCCEEEEEc
Confidence 988888764
No 194
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=85.57 E-value=1.7 Score=35.68 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=52.2
Q ss_pred CcceEEEecchhhHHHHHHHHhcC-----CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-c-----cCCCCCCC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-W-----ARGLDVQQ 340 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~-----~~G~d~~~ 340 (406)
..++||.+++++.+..+.+.++.. ++.+..++|+.+..++...+ ...+|+|+|+- + ...+++..
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 468999999999998888887653 67888999998876554432 35789999963 1 13456667
Q ss_pred CCEEEEec
Q 015454 341 VSLVINYD 348 (406)
Q Consensus 341 ~~~vi~~~ 348 (406)
++++|+-+
T Consensus 167 ~~~lViDE 174 (230)
T 2oxc_A 167 IRLFILDE 174 (230)
T ss_dssp CCEEEESS
T ss_pred CCEEEeCC
Confidence 77777643
No 195
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.56 E-value=0.39 Score=40.59 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=17.4
Q ss_pred hhcCCcEEEECCCCCChhhHhH
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~ 88 (406)
+..|.-+.+.||+|||||..+-
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHH
Confidence 4566778999999999995443
No 196
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=85.42 E-value=2.3 Score=38.32 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=22.5
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCC
Q 015454 27 EGVEAITSFDAMGIKDDLLRGIYQYGFE 54 (406)
Q Consensus 27 ~~~~~~~~~~~~~l~~~i~~~l~~~~~~ 54 (406)
..+.+...+...++++..++.|...||.
T Consensus 78 ~~~~~~~~l~~~gi~~~~~~~L~~ag~~ 105 (400)
T 3lda_A 78 GSFVPIEKLQVNGITMADVKKLRESGLH 105 (400)
T ss_dssp CCSCBGGGGCCTTCCHHHHHHHHHTTCC
T ss_pred cCccCHHHHHhCCCCHHHHHHHHHcCCC
Confidence 3345566778888999999999999986
No 197
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.34 E-value=0.67 Score=40.70 Aligned_cols=19 Identities=42% Similarity=0.712 Sum_probs=16.6
Q ss_pred hhcCCcEEEECCCCCChhh
Q 015454 67 IIKGRDVIAQAQSGTGKTS 85 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~ 85 (406)
+..|+.+.+.||||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 4468899999999999995
No 198
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=85.33 E-value=9 Score=30.41 Aligned_cols=74 Identities=11% Similarity=0.146 Sum_probs=51.8
Q ss_pred CcceEEEecchhhHHHHHHHHhcC--CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-----cc-CCCCCCCCCE
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----WA-RGLDVQQVSL 343 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~~-~G~d~~~~~~ 343 (406)
..+++|.++++..+..+.+.++.. +..+..++|+.+.......+. ...+|+|+|+. +. ..+++..++.
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 458999999999999898888765 357788888876554433332 35789999952 12 2466778888
Q ss_pred EEEecC
Q 015454 344 VINYDL 349 (406)
Q Consensus 344 vi~~~~ 349 (406)
+|+-+.
T Consensus 148 iViDEa 153 (207)
T 2gxq_A 148 AVLDEA 153 (207)
T ss_dssp EEEESH
T ss_pred EEEECh
Confidence 886443
No 199
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.32 E-value=0.2 Score=42.78 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=28.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHH-HHhHHhhh--cCCcEEEECCCCCChhhHh
Q 015454 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQ-QRAVMPII--KGRDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q-~~~~~~i~--~~~~~il~~~tGsGKT~~~ 87 (406)
+...|++.+-.+.+++.+...- ..|+. .+++..+- -.+.+++.||+|+|||..+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 3467888887778877776421 12222 23343322 1245999999999999543
No 200
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.30 E-value=6 Score=33.94 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=14.4
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
+-+.+.++.|+|||.....
T Consensus 99 ~~i~i~g~~G~GKTT~~~~ 117 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAK 117 (295)
T ss_dssp EEEEEECCTTTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3467789999999965544
No 201
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=85.29 E-value=1.3 Score=38.72 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=31.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHH-HhHHh-hhcCCcEEEECCCCCChhhHhH
Q 015454 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQ-RAVMP-IIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~-~~~~~-i~~~~~~il~~~tGsGKT~~~~ 88 (406)
+...|++++=.+..++.+...-. .|.+. +.+.. ....+.+++.||+|+|||..+-
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHhCHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 34678888877777777754210 11111 01111 1123679999999999996544
No 202
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=85.11 E-value=4.4 Score=31.50 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=51.5
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH----hcCCCEEEechHHHHHHHHccCCCcCC
Q 015454 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (406)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~l~~~~~~~~~ 175 (406)
.+.++||+|+++..+....+.+... +..+..++++.+..++...+ ....+|+|+|. . ....+++..
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~-~~~Gid~~~ 102 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----V-CARGIDVKQ 102 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----S-CCTTTCCTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----c-hhcCCCccc
Confidence 3557999999999999999888764 46777888887765544322 24578999993 1 234567777
Q ss_pred cceeec
Q 015454 176 IKLLVL 181 (406)
Q Consensus 176 ~~~vV~ 181 (406)
+++||.
T Consensus 103 ~~~Vi~ 108 (175)
T 2rb4_A 103 VTIVVN 108 (175)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888774
No 203
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.03 E-value=0.57 Score=41.60 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=18.1
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhh
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTV 95 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~ 95 (406)
.+..+++.||||||||...- .++..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~-~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLA-AMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHH-HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH-HHHhcc
Confidence 34568999999999995433 344444
No 204
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=84.99 E-value=0.98 Score=39.47 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=31.3
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccC---------CCc----eeEEEEcCcHHH-HHHHHHHHHHh
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTS---------SRE----VQALILSPTREL-ATQTEKVILAI 124 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~---------~~~----~~~lil~P~~~l-~~q~~~~~~~~ 124 (406)
.-+++.|++|+|||..++-.+.+..... ..+ .+++|+.-...+ ..+..+.+.++
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 4479999999999966554444322111 112 577887764432 44444444444
No 205
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=84.87 E-value=0.7 Score=37.21 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=17.0
Q ss_pred cEEEECCCCCChhhHhHHHHHhh
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQT 94 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~ 94 (406)
-.++.|++|||||..+...+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 36899999999998665544443
No 206
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=84.80 E-value=0.89 Score=37.30 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=23.6
Q ss_pred hcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcC
Q 015454 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P 109 (406)
..|.-+++.||+|+|||..+...+...... +.+++++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~ 59 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTT 59 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEES
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEc
Confidence 345678999999999996544433232222 234566543
No 207
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=84.73 E-value=1.1 Score=42.18 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=27.2
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCC-CceeEEEEcCc
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPT 110 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~-~~~~~lil~P~ 110 (406)
+..++++.|.||||||.+.-..++..+.... ...+++++=|.
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 3478999999999999766655555544332 33445555443
No 208
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=84.58 E-value=0.6 Score=36.82 Aligned_cols=20 Identities=10% Similarity=0.303 Sum_probs=15.9
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.|+-+++.||+|+|||..+-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45668999999999996443
No 209
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.36 E-value=0.6 Score=37.49 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=17.1
Q ss_pred hcCCcEEEECCCCCChhhHhHH
Q 015454 68 IKGRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~~~~ 89 (406)
..++.+++.|++|||||...-.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHH
Confidence 3567899999999999965543
No 210
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.36 E-value=0.6 Score=41.64 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=17.9
Q ss_pred hhhcCCcEEEECCCCCChhhHh
Q 015454 66 PIIKGRDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 66 ~i~~~~~~il~~~tGsGKT~~~ 87 (406)
.+..|..+++.||||||||..+
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHHH
Confidence 3456889999999999999543
No 211
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.32 E-value=0.72 Score=42.32 Aligned_cols=44 Identities=16% Similarity=0.353 Sum_probs=29.3
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~ 115 (406)
...|+++.|+||||||..+...+.+.+.. +..++++=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~---g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLR---GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHT---TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEeCCCchhH
Confidence 35789999999999997653333333322 345777778766653
No 212
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=84.31 E-value=3.4 Score=33.40 Aligned_cols=71 Identities=24% Similarity=0.308 Sum_probs=51.2
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH----hcCCCEEEechHHHHHHHHccCCCcCCc
Q 015454 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (406)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~l~~~~~~~~~~ 176 (406)
+.++||.|+++.-+....+.+... ++.+..++|+.+..++...+ ....+|+|+|. . ....++...+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~-~~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----V-AARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----T-TTCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----h-hhcCCCCccC
Confidence 457999999999999999988775 36777888887765544322 24478999993 2 2345677778
Q ss_pred ceeec
Q 015454 177 KLLVL 181 (406)
Q Consensus 177 ~~vV~ 181 (406)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 87774
No 213
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=84.23 E-value=0.57 Score=38.13 Aligned_cols=35 Identities=14% Similarity=0.031 Sum_probs=22.9
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcC
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P 109 (406)
.|.-+++.||+|+|||..+...+. . .+.+++++.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~---~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---L---SGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---H---HCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---H---cCCcEEEEEC
Confidence 456689999999999965554333 1 2335666653
No 214
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=84.16 E-value=3.7 Score=33.91 Aligned_cols=73 Identities=7% Similarity=0.107 Sum_probs=53.0
Q ss_pred CcceEEEecchhhHHHHHHHHhc----CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-----cc-CCCCCCCC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----WA-RGLDVQQV 341 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~~-~G~d~~~~ 341 (406)
..++||.+++++.+..+.+.++. .++.+..++|+.+.......+. ...+|+|+|+- +. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCCcccc
Confidence 35799999999988877776654 4788999999988776554443 25789999952 22 24577788
Q ss_pred CEEEEec
Q 015454 342 SLVINYD 348 (406)
Q Consensus 342 ~~vi~~~ 348 (406)
+++|+-+
T Consensus 178 ~~lViDE 184 (242)
T 3fe2_A 178 TYLVLDE 184 (242)
T ss_dssp CEEEETT
T ss_pred cEEEEeC
Confidence 8887644
No 215
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=84.06 E-value=0.43 Score=41.92 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=19.4
Q ss_pred HHhhhcCCcEEEECCCCCChhhHhH
Q 015454 64 VMPIIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 64 ~~~i~~~~~~il~~~tGsGKT~~~~ 88 (406)
...+..+.++++.||+|+|||..+-
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHHH
Confidence 3345567899999999999996543
No 216
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=83.98 E-value=0.63 Score=38.76 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=30.3
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (406)
|.-+++.|++|+|||..++-.+.+..... +..++|++-. .-..+..+.+...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeeccc-CCHHHHHHHHHHc
Confidence 45689999999999965554444433222 2346666542 3345555555443
No 217
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=83.95 E-value=0.62 Score=37.61 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=17.7
Q ss_pred hhhcCCcEEEECCCCCChhhHhH
Q 015454 66 PIIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 66 ~i~~~~~~il~~~tGsGKT~~~~ 88 (406)
++..+.-+++.||+|||||...-
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHH
Confidence 34557779999999999996444
No 218
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=83.80 E-value=0.31 Score=42.72 Aligned_cols=55 Identities=7% Similarity=0.064 Sum_probs=32.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHH-hHHh-hhcCCcEEEECCCCCChhhHhH
Q 015454 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQR-AVMP-IIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~-~~~~-i~~~~~~il~~~tGsGKT~~~~ 88 (406)
+...|+++.-.+..++.+...-. .+.... .+.. ....+++++.||+|+|||..+-
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34568888777788777765211 111110 0111 1113569999999999996544
No 219
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.76 E-value=1.4 Score=38.49 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=31.1
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhcc---CCCceeEEEEcCcHHH-HHHHHHHHHHh
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDT---SSREVQALILSPTREL-ATQTEKVILAI 124 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~---~~~~~~~lil~P~~~l-~~q~~~~~~~~ 124 (406)
|.-+++.||+|+|||..++..+...... +..+.+++|+.-...+ ..+..+.+.++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3558999999999996655444433221 1113467777654332 34444444443
No 220
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.72 E-value=1 Score=37.76 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=32.9
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhhc--CCcEEEECCCCCChhhHhH
Q 015454 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 29 ~~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~~--~~~~il~~~tGsGKT~~~~ 88 (406)
..+..+|+++.-.+.....+...-. .. .....+..+.- .+.+++.||+|+|||..+-
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~--~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVE--FL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHH--HH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHH--HH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 3445678887777777776654211 01 01123333211 2459999999999995443
No 221
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=83.71 E-value=0.63 Score=36.67 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=24.2
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (406)
+++.|++|||||..+.- +.. . +.+++|+......-.++.+++...
T Consensus 2 ilV~Gg~~SGKS~~A~~-la~---~---~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-LIG---D---APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHH-HHC---S---CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHH-HHh---c---CCCeEEEecCCCCCHHHHHHHHHH
Confidence 68999999999954332 221 1 234677777555555555555543
No 222
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=83.69 E-value=7.5 Score=30.77 Aligned_cols=72 Identities=24% Similarity=0.287 Sum_probs=51.0
Q ss_pred eeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH----hcCCCEEEechHHHHHHHHccCCCcCCcc
Q 015454 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (406)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~l~~~~~~~~~~~ 177 (406)
.++||+|+++.-+..+.+.+...+ +.+..++++.+..++...+ .....|+|+|. .+ ...+++..++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~g----~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~-~~Gldi~~v~ 124 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLKG----VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VA-SKGLDFPAIQ 124 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HH-HTTCCCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----ch-hcCCCcccCC
Confidence 469999999999999999887753 6677888887655443322 24578999992 22 2356677788
Q ss_pred eeecch
Q 015454 178 LLVLDE 183 (406)
Q Consensus 178 ~vV~DE 183 (406)
+||.-+
T Consensus 125 ~VI~~d 130 (191)
T 2p6n_A 125 HVINYD 130 (191)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 777633
No 223
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=83.66 E-value=0.53 Score=37.19 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=16.2
Q ss_pred CCcEEEECCCCCChhhHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~ 89 (406)
.+.+++.|++|||||.+.-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45789999999999965553
No 224
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.56 E-value=0.57 Score=37.51 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=15.2
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
++.+++.||||+|||..++
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4568999999999995443
No 225
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=83.42 E-value=0.52 Score=37.08 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=17.3
Q ss_pred hcCCcEEEECCCCCChhhHhHH
Q 015454 68 IKGRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~~~~ 89 (406)
..+..+++.|++|||||...-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHH
Confidence 3456799999999999965543
No 226
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.35 E-value=0.94 Score=38.22 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=16.4
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.+.++++.||+|+|||..+-
T Consensus 28 ~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 35789999999999996543
No 227
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=83.34 E-value=0.71 Score=37.08 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=15.2
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.|+-+.+.||+|+|||...-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46678999999999996444
No 228
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=83.32 E-value=3.2 Score=47.48 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=39.7
Q ss_pred CHHHHHHHHHCCCCCChHHHHH-h---HHhhhcCCcEEEECCCCCChhhHhHHHHHhhhcc-CCCceeEEEEcCc
Q 015454 41 KDDLLRGIYQYGFEKPSAIQQR-A---VMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPT 110 (406)
Q Consensus 41 ~~~i~~~l~~~~~~~l~~~Q~~-~---~~~i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~-~~~~~~~lil~P~ 110 (406)
.+.+.+.+...|+ ++.+.+.. + ++.+.-.+.+++.||||+|||.++-.... .+.. .+......++-|-
T Consensus 874 ~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~-al~~l~~~~~~~~~iNPK 946 (3245)
T 3vkg_A 874 RKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLE-AIEQVDNIKSEAHVMDPK 946 (3245)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHH-HHTTTTTCEEEEEEECTT
T ss_pred HHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHH-HHHHhhCCCceEEEECCC
Confidence 3455566666777 56666543 2 22333456789999999999977664332 2222 1223345566663
No 229
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=83.27 E-value=0.54 Score=36.82 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=15.2
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
+.-+++.|++|||||.+.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3558999999999996544
No 230
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=83.13 E-value=0.53 Score=36.64 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=14.4
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
-+++.|++|||||..+-.
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999965443
No 231
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=82.98 E-value=0.74 Score=37.30 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=15.8
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.|.-+++.||+|+|||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 35668999999999996544
No 232
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=82.97 E-value=2.3 Score=48.04 Aligned_cols=48 Identities=19% Similarity=0.082 Sum_probs=32.0
Q ss_pred CHHHHHHHHHCCCCCChHHHH----HhHHhhhcCCcEEEECCCCCChhhHhHH
Q 015454 41 KDDLLRGIYQYGFEKPSAIQQ----RAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 41 ~~~i~~~l~~~~~~~l~~~Q~----~~~~~i~~~~~~il~~~tGsGKT~~~~~ 89 (406)
.+.+.+.+...++ .+.+.+. +.+..+...+.+++.||||+|||.++-.
T Consensus 891 ~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 891 VQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 3455666666677 4566553 2233344467799999999999976654
No 233
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=82.83 E-value=1.9 Score=35.58 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=18.4
Q ss_pred cCCcEEEECCCCCChhhHhHHHHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVC 92 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~ 92 (406)
.|.-+.+.||+|+|||..+...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456789999999999966555444
No 234
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=82.82 E-value=1.2 Score=38.91 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=31.2
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (406)
.|.-+++.|++|+|||..++-.+.+.... +.+++|++-- .-..|+..++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTT---TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEECC-CCHHHHHHHHHH
Confidence 34568999999999996555444443332 2467777653 334555555443
No 235
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=82.80 E-value=0.39 Score=38.21 Aligned_cols=21 Identities=19% Similarity=0.526 Sum_probs=16.5
Q ss_pred hcCCcEEEECCCCCChhhHhH
Q 015454 68 IKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~~~ 88 (406)
..|.-+++.||+|||||..+-
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 456678999999999996433
No 236
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=82.42 E-value=2.8 Score=34.56 Aligned_cols=74 Identities=14% Similarity=0.211 Sum_probs=45.0
Q ss_pred CcceEEEecchhhHHHHHHHHhcC----CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcC-----cccC-CCCCCCC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-----VWAR-GLDVQQV 341 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-----~~~~-G~d~~~~ 341 (406)
..++||.++++..+..+.+.++.. +..+..++|+.+... ....+..+..+|+|+|+ .+.. .+++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 358999999999998888887653 566777777654332 23344567789999994 2223 3567778
Q ss_pred CEEEEec
Q 015454 342 SLVINYD 348 (406)
Q Consensus 342 ~~vi~~~ 348 (406)
+.+|+-+
T Consensus 175 ~~lViDE 181 (237)
T 3bor_A 175 KMFVLDE 181 (237)
T ss_dssp CEEEEES
T ss_pred cEEEECC
Confidence 8877643
No 237
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=82.40 E-value=5.1 Score=35.66 Aligned_cols=73 Identities=12% Similarity=0.360 Sum_probs=54.0
Q ss_pred cceEEEecchhhHHHHHHHHhcC-----CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-c-----cCCCCCCCC
Q 015454 273 TQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-W-----ARGLDVQQV 341 (406)
Q Consensus 273 ~k~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~-----~~G~d~~~~ 341 (406)
.++||.++++..+..+.+.+.+. +..+..++|+.+....... +..+..+|+|+|+. + ...+++..+
T Consensus 77 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 153 (391)
T 1xti_A 77 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHI 153 (391)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred eeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCcccccc
Confidence 58999999999988888777653 6889999999887655443 34577899999952 2 234567778
Q ss_pred CEEEEec
Q 015454 342 SLVINYD 348 (406)
Q Consensus 342 ~~vi~~~ 348 (406)
+.||+-+
T Consensus 154 ~~vViDE 160 (391)
T 1xti_A 154 KHFILDE 160 (391)
T ss_dssp SEEEECS
T ss_pred CEEEEeC
Confidence 8887644
No 238
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=82.39 E-value=0.76 Score=36.98 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=16.8
Q ss_pred hcCCcEEEECCCCCChhhHhH
Q 015454 68 IKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~~~ 88 (406)
..|.-+.+.||+|||||..+-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 356778999999999996544
No 239
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=82.33 E-value=0.66 Score=36.73 Aligned_cols=20 Identities=45% Similarity=0.712 Sum_probs=16.3
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.+..+++.|++|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35679999999999996554
No 240
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=82.22 E-value=0.73 Score=40.35 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.2
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
+-++|.||||+|||.....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999965443
No 241
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.22 E-value=1.6 Score=39.41 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=28.2
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~ 112 (406)
.+.++++.|+||+|||...-..+..... .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~---~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM---QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH---CCCEEEEEeCCcC
Confidence 5678999999999999665544433332 2456777777654
No 242
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=82.02 E-value=0.72 Score=35.88 Aligned_cols=19 Identities=21% Similarity=0.414 Sum_probs=15.4
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
+..+++.||+|||||...-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4568999999999996543
No 243
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=81.86 E-value=0.78 Score=36.97 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=24.6
Q ss_pred HHHHHHHHCCCCCChHHHHHhHHhhhcC----CcEEEECCCCCChhhHh
Q 015454 43 DLLRGIYQYGFEKPSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 43 ~i~~~l~~~~~~~l~~~Q~~~~~~i~~~----~~~il~~~tGsGKT~~~ 87 (406)
.|.+-|.=.++ .+-.+ ...+..+.++ ..+++.||+|+|||..+
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 44444432232 23333 3444444443 35899999999999654
No 244
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=81.83 E-value=0.65 Score=39.03 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=15.6
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
...+++.||+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4669999999999996544
No 245
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=81.75 E-value=2.1 Score=34.82 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=45.5
Q ss_pred CCcceEEEecchhhHHHHHHHHhc----CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcc------cCCCCCCC
Q 015454 271 TITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVW------ARGLDVQQ 340 (406)
Q Consensus 271 ~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~------~~G~d~~~ 340 (406)
...++||.++++..+..+.+.+.. .+..+..++|+.+..+.... + .+.+|+|+|+.. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCCEEEECHHHHHHHHHhCCcchhh
Confidence 335899999999998888877754 36778888888665443322 2 237899999531 23466777
Q ss_pred CCEEEEec
Q 015454 341 VSLVINYD 348 (406)
Q Consensus 341 ~~~vi~~~ 348 (406)
++.+|+-+
T Consensus 156 ~~~iViDE 163 (224)
T 1qde_A 156 IKMFILDE 163 (224)
T ss_dssp CCEEEEET
T ss_pred CcEEEEcC
Confidence 88887644
No 246
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=81.70 E-value=0.78 Score=39.69 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=14.6
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
.-++|.||||+|||..+..
T Consensus 4 ~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHH
Confidence 3478999999999965443
No 247
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=81.63 E-value=0.64 Score=40.05 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=30.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHH-HHhHHhhh-cCCcEEEECCCCCChhhHhH
Q 015454 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQ-QRAVMPII-KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q-~~~~~~i~-~~~~~il~~~tGsGKT~~~~ 88 (406)
+...|+++.=.+...+.+...-. .+.. .+.+..+. ..+.+++.||+|+|||..+-
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 34567777666677666654210 1100 01111121 24679999999999996544
No 248
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=81.35 E-value=1.3 Score=39.03 Aligned_cols=53 Identities=9% Similarity=0.022 Sum_probs=29.7
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccC---CCceeEEEEcCcHHH-HHHHHHHHHHh
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTREL-ATQTEKVILAI 124 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~---~~~~~~lil~P~~~l-~~q~~~~~~~~ 124 (406)
-+++.||+|+|||..++..+....... ..+.+++|+.-...+ ..+....+.++
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 479999999999966554444332211 124467777654431 23344444443
No 249
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=81.35 E-value=0.82 Score=39.48 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=14.2
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
-++|.||||+|||..+..
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 378999999999965443
No 250
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=81.29 E-value=1 Score=39.96 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=18.7
Q ss_pred HHhhhcCCc--EEEECCCCCChhhHhH
Q 015454 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 64 ~~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
+..+++|.| ++.-|.||||||++..
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 344566776 6788999999997754
No 251
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=81.25 E-value=2.7 Score=37.51 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=15.8
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999996554
No 252
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=81.22 E-value=0.88 Score=36.54 Aligned_cols=20 Identities=45% Similarity=0.582 Sum_probs=16.1
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.|.-+.+.||+|||||..+-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 46678899999999996443
No 253
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=81.09 E-value=0.74 Score=36.46 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.5
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
+..+++.|++|||||...-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999996544
No 254
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=81.02 E-value=0.71 Score=36.15 Aligned_cols=17 Identities=18% Similarity=0.351 Sum_probs=13.9
Q ss_pred cEEEECCCCCChhhHhH
Q 015454 72 DVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~ 88 (406)
-+++.|++|||||..+-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 37899999999996544
No 255
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=81.00 E-value=1.5 Score=37.02 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=29.1
Q ss_pred HHHHHHHHHCCCCCChHHHH-HhHHhhhcCC-----cEEEECCCCCChhhHhH
Q 015454 42 DDLLRGIYQYGFEKPSAIQQ-RAVMPIIKGR-----DVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 42 ~~i~~~l~~~~~~~l~~~Q~-~~~~~i~~~~-----~~il~~~tGsGKT~~~~ 88 (406)
..+.+-|.-.|+ .+.+- .++..+++++ .+++.||+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~---~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGY---DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTC---CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 366677766676 34443 3344555543 48999999999996655
No 256
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=80.86 E-value=0.69 Score=38.85 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=29.6
Q ss_pred cccccccCCCCHHHHHHHHHCC--CCCChHHHHHhHHhhhcCCcEEEECCCCCChhhHhH
Q 015454 31 AITSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~--~~~l~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~ 88 (406)
+...|+++.-.+...+.+...- +..+..++.- .....+.+++.||+|+|||..+-
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHHH
Confidence 3456777776777776664310 0000000000 01113569999999999996543
No 257
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=80.74 E-value=0.73 Score=35.75 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=14.4
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
.+++.|++|||||...-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999965543
No 258
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=80.68 E-value=0.73 Score=41.27 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=16.7
Q ss_pred hcCCcEEEECCCCCChhhHhH
Q 015454 68 IKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~~~ 88 (406)
..|..+++.||||||||...-
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 456678999999999995443
No 259
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=80.61 E-value=0.9 Score=38.14 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.4
Q ss_pred EEEECCCCCChhhHhH
Q 015454 73 VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~ 88 (406)
+++.||+|||||..+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6899999999996544
No 260
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=80.59 E-value=0.56 Score=36.64 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=15.7
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
+|.-+.+.||+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45668899999999996443
No 261
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=80.33 E-value=6.1 Score=30.60 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=51.9
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH----hcCCCEEEechHHHHHHHHccCCCcCCc
Q 015454 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (406)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~l~~~~~~~~~~ 176 (406)
+.++||+|+++.-+..+++.+... ++.+..++++.+..++...+ .....|+|+|. . ....+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-~-----~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-L-----FGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-C-----CSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-c-----hhcCcchhhC
Confidence 457999999999999999998775 36677888887655543322 24578999994 1 2345667777
Q ss_pred ceeecchh
Q 015454 177 KLLVLDES 184 (406)
Q Consensus 177 ~~vV~DE~ 184 (406)
++||.-+.
T Consensus 101 ~~Vi~~d~ 108 (172)
T 1t5i_A 101 NIAFNYDM 108 (172)
T ss_dssp SEEEESSC
T ss_pred CEEEEECC
Confidence 77775443
No 262
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=80.33 E-value=0.87 Score=48.14 Aligned_cols=21 Identities=29% Similarity=0.503 Sum_probs=17.1
Q ss_pred hcCCcEEEECCCCCChhhHhH
Q 015454 68 IKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~~~ 88 (406)
..|+.+.++|+||||||....
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~ 1123 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVA 1123 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHH
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 457889999999999996443
No 263
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=80.32 E-value=11 Score=35.51 Aligned_cols=89 Identities=7% Similarity=0.085 Sum_probs=60.2
Q ss_pred HHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH----hcCCCEEEechHHHH
Q 015454 88 ALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVC 163 (406)
Q Consensus 88 ~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~ 163 (406)
+..+...+.....+.++||+|+++.-+..+++.+..... .+..+..++++....++.... ....+|+|+|.
T Consensus 326 ~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~---- 400 (563)
T 3i5x_A 326 VEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD---- 400 (563)
T ss_dssp HHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG----
T ss_pred HHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc----
Confidence 333334444434567899999999999999999987532 246677888887765543322 24578999994
Q ss_pred HHHHccCCCcCCcceeecch
Q 015454 164 DMIKRKTLRTRAIKLLVLDE 183 (406)
Q Consensus 164 ~~l~~~~~~~~~~~~vV~DE 183 (406)
.....+++.++++||.-.
T Consensus 401 --~~~~GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 401 --VGARGMDFPNVHEVLQIG 418 (563)
T ss_dssp --GGTSSCCCTTCCEEEEES
T ss_pred --hhhcCCCcccCCEEEEEC
Confidence 223567788888877544
No 264
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=80.29 E-value=1.3 Score=38.72 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=18.8
Q ss_pred HHhhhcCCc--EEEECCCCCChhhHhH
Q 015454 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 64 ~~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
+..+++|.+ ++.-|.||||||.+..
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEec
Confidence 344566776 6788999999997754
No 265
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=80.23 E-value=1.1 Score=35.88 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=16.1
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.|+-+++.||+|+|||...-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHH
Confidence 46678999999999996443
No 266
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=80.20 E-value=4.6 Score=32.86 Aligned_cols=73 Identities=7% Similarity=0.099 Sum_probs=48.1
Q ss_pred CcceEEEecchhhHHHHHHHHhc---CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc------ccCCCCCCCCC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRG---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV------WARGLDVQQVS 342 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~------~~~G~d~~~~~ 342 (406)
..++||.+++++.+..+.+.++. .+..+..++|+.+...+...+ ....+|+|+|+- ....+++.+++
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI----SKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH----HSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 45799999999999888888876 367788888876654433222 245789999952 12356777888
Q ss_pred EEEEec
Q 015454 343 LVINYD 348 (406)
Q Consensus 343 ~vi~~~ 348 (406)
++|+-+
T Consensus 170 ~lViDE 175 (228)
T 3iuy_A 170 YLVIDE 175 (228)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 887644
No 267
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=79.96 E-value=1.2 Score=36.34 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=16.5
Q ss_pred hhcCCcEEEECCCCCChhhHhH
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~ 88 (406)
+..|+-+.+.||+|+|||..+-
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 3457789999999999995443
No 268
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=79.88 E-value=0.68 Score=39.88 Aligned_cols=18 Identities=17% Similarity=0.010 Sum_probs=14.5
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
..+++.||+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999996544
No 269
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=79.46 E-value=1.4 Score=40.39 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=31.1
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 122 (406)
.|.-+++.|++|+|||..++-.+.+.... +.+++|++-- .-..|+..++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlE-ms~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE-MGKKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSS-SCTTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECC-CCHHHHHHHHH
Confidence 34568999999999996655544444433 4467887653 33444444443
No 270
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=79.32 E-value=3.1 Score=39.78 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=24.4
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCceEEEE
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~l 212 (406)
.+.+++++||.-.-.+......+...+..+..+..++..
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 535 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVI 535 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456789999988777666566666665555444333333
No 271
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=79.27 E-value=1.2 Score=38.47 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=16.6
Q ss_pred CCcEEEECCCCCChhhHhHHHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTV 91 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i 91 (406)
++-+.+.|++|+|||..+....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3457899999999997655433
No 272
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=79.18 E-value=0.96 Score=36.30 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=16.0
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.+.-+++.||+|||||..+-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678999999999996544
No 273
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=79.16 E-value=10 Score=34.07 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=52.5
Q ss_pred CCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH----hcCCCEEEechHHHHHHHHccCCCcC
Q 015454 99 SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTR 174 (406)
Q Consensus 99 ~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~l~~~~~~~~ 174 (406)
..+.++||+++++.-+...++.+.+. +..+..++++....++.... ....+|+|+|. .+ ...+++.
T Consensus 274 ~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidip 343 (417)
T 2i4i_A 274 GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLDIS 343 (417)
T ss_dssp CTTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HH-HTTSCCC
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hh-hcCCCcc
Confidence 34668999999999999999988775 36677888887755543322 24578999994 22 3467777
Q ss_pred Ccceeec
Q 015454 175 AIKLLVL 181 (406)
Q Consensus 175 ~~~~vV~ 181 (406)
++++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 7887775
No 274
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=79.16 E-value=21 Score=32.48 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=71.1
Q ss_pred CCcceEEEecchhhHHHHHHHHhcC-Cc---eEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-cc-----CCCCCCC
Q 015454 271 TITQAVIFCNTKRKVDWLTEKMRGY-NF---TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-WA-----RGLDVQQ 340 (406)
Q Consensus 271 ~~~k~lif~~~~~~~~~l~~~l~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~~-----~G~d~~~ 340 (406)
...++||.|+++..+..+.+.+.+. +. .+..++|+....++..... ..+|+|+|.- +. ..+....
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 4579999999999888888888764 44 8999999988876655443 4679999952 21 2356667
Q ss_pred CCEEEEecCCC--ChhhhHhhhhhccCCCCceeEEEEec--cCcHHHHHHHHHHHc
Q 015454 341 VSLVINYDLPN--NRELYIHRIGRSGRFGRKGVAINFVK--NDDIKILRDIEQYYS 392 (406)
Q Consensus 341 ~~~vi~~~~~~--s~~~~~Q~~GR~~R~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 392 (406)
.+.||+-.... +...+.+...+..+..+....+.+.. ..+...+..+...+.
T Consensus 126 ~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~ 181 (494)
T 1wp9_A 126 VSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLG 181 (494)
T ss_dssp CSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHHHTT
T ss_pred ceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCCCCcHHHHHHHHhcC
Confidence 88887654432 12234333333322222233444332 234556666666654
No 275
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=79.07 E-value=0.28 Score=51.80 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=22.6
Q ss_pred CCcceeecchhhHHhccCcHHHHHHHHHhCCCCc
Q 015454 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDL 207 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~~~~~~~~~~~~~~~~ 207 (406)
.+.+++++||+=...+......+...+..+.++.
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~ 604 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGR 604 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTS
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 5578999999987777665555555555443333
No 276
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=78.90 E-value=1.4 Score=38.94 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=18.2
Q ss_pred HhhhcCCc--EEEECCCCCChhhHhH
Q 015454 65 MPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 65 ~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
..++.|.+ ++.-|.||||||++..
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhCCCcceEEEECCCCCCcceEee
Confidence 34566766 5788999999997654
No 277
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=78.78 E-value=1.5 Score=38.31 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=20.2
Q ss_pred hHHhhhcCCc--EEEECCCCCChhhHhH
Q 015454 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 63 ~~~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
.+..+++|.+ ++.-|.||||||++..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 4556677877 5789999999997654
No 278
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=78.77 E-value=1.4 Score=38.77 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=17.5
Q ss_pred HhhhcCCc--EEEECCCCCChhhHh
Q 015454 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (406)
Q Consensus 65 ~~i~~~~~--~il~~~tGsGKT~~~ 87 (406)
..+++|.+ ++.-|.||||||++.
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 34456766 578899999999875
No 279
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=78.74 E-value=1.4 Score=34.90 Aligned_cols=18 Identities=33% Similarity=0.726 Sum_probs=14.1
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
+-+.+.||+|+|||...-
T Consensus 2 ~ii~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEESSSSSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 347899999999996443
No 280
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=78.61 E-value=1.5 Score=38.62 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=18.0
Q ss_pred HhhhcCCc--EEEECCCCCChhhHhH
Q 015454 65 MPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 65 ~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
..+++|.+ ++.-|.||||||++..
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMG 108 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhCCCceeEEeecCCCCCCCEEee
Confidence 34456766 5788999999997653
No 281
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=78.55 E-value=0.85 Score=35.60 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=15.3
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
+..+++.|++|||||..+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568999999999996544
No 282
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=78.46 E-value=1.5 Score=38.91 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=18.6
Q ss_pred HHhhhcCCc--EEEECCCCCChhhHhH
Q 015454 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 64 ~~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
+..+++|.+ ++.-|.||||||++..
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 344567776 5788999999997653
No 283
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=78.42 E-value=8.1 Score=30.33 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=42.4
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhH---HHH-hcCCCEEEechHHHHHHHHccCCCcCC
Q 015454 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI---RKL-EHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (406)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iii~T~~~l~~~l~~~~~~~~~ 175 (406)
++.++||+|+++.-+....+.+... ++.+..++|+.+..++. ..+ .....|+|+|. .+ ...+++..
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VA-----ARGLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-hh-----hcCCCccc
Confidence 4567999999999999999988775 35677777765543322 122 34578999993 22 23456667
Q ss_pred cceeec
Q 015454 176 IKLLVL 181 (406)
Q Consensus 176 ~~~vV~ 181 (406)
+++||.
T Consensus 115 ~~~VI~ 120 (185)
T 2jgn_A 115 VKHVIN 120 (185)
T ss_dssp BSEEEE
T ss_pred CCEEEE
Confidence 777765
No 284
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=78.32 E-value=0.72 Score=36.41 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=15.8
Q ss_pred CCcEEEECCCCCChhhHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~ 89 (406)
|..+++.|++|||||...-.
T Consensus 4 g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999965543
No 285
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=78.27 E-value=1.5 Score=38.79 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=17.9
Q ss_pred HhhhcCCc--EEEECCCCCChhhHhH
Q 015454 65 MPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 65 ~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
..+++|.+ ++.-|.||||||++..
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred HHHhCCCceEEEEeCCCCCCceeeec
Confidence 34456766 5788999999997653
No 286
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=78.23 E-value=1.6 Score=38.78 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=18.6
Q ss_pred HHhhhcCCc--EEEECCCCCChhhHhH
Q 015454 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 64 ~~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
+..++.|.+ ++.-|.||||||++..
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCCceEEEeecCCCCCCceEEe
Confidence 334556776 5788999999998753
No 287
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=78.18 E-value=2.6 Score=35.80 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=19.8
Q ss_pred hhhcCCcEEEECCCCCChhhHhHHHH
Q 015454 66 PIIKGRDVIAQAQSGTGKTSMIALTV 91 (406)
Q Consensus 66 ~i~~~~~~il~~~tGsGKT~~~~~~i 91 (406)
-+..|.-+++.||+|+|||..+...+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 45567789999999999996555433
No 288
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=78.04 E-value=1.1 Score=39.87 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=15.3
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
+++++.||+|+|||..+-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 579999999999996554
No 289
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=78.04 E-value=1.6 Score=38.51 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=19.8
Q ss_pred hHHhhhcCCc--EEEECCCCCChhhHhH
Q 015454 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 63 ~~~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
.+..+++|.+ ++.-|.||||||+++.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 4555667876 5788999999998764
No 290
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=77.98 E-value=1.4 Score=36.07 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=16.3
Q ss_pred hhcCCcEEEECCCCCChhhHhH
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~ 88 (406)
...|.-+++.||.|+|||..+-
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 4556778999999999996433
No 291
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=77.97 E-value=1.5 Score=38.72 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=18.5
Q ss_pred HHhhhcCCc--EEEECCCCCChhhHhH
Q 015454 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 64 ~~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
+..++.|.+ ++.-|.||||||+++.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHcCCccceeeecCCCCCCCeEEe
Confidence 344556766 5788999999997653
No 292
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=77.94 E-value=1.5 Score=39.05 Aligned_cols=25 Identities=36% Similarity=0.596 Sum_probs=18.5
Q ss_pred HHhhhcCCc--EEEECCCCCChhhHhH
Q 015454 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 64 ~~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
+..++.|.+ ++.-|.||||||++..
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 334566776 5788999999997653
No 293
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=77.94 E-value=1.1 Score=39.87 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=17.7
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhh
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTV 95 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~ 95 (406)
+.+++.||+|+|||..+-. +...+
T Consensus 71 ~~vLl~GppGtGKT~la~~-la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMG-MAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHH-HHHHH
T ss_pred CEEEEECCCCCCHHHHHHH-HHHHh
Confidence 5799999999999965443 44443
No 294
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=77.93 E-value=1 Score=34.79 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.8
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
+++++.|+.|||||.+.-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5689999999999976554
No 295
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=77.86 E-value=1.7 Score=37.68 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=15.9
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
..++++.||+|+|||..+-
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TSCEEEESCTTSCHHHHHH
T ss_pred CCcEEEECCCCchHHHHHH
Confidence 5689999999999996543
No 296
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=77.82 E-value=1.7 Score=38.26 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=18.1
Q ss_pred HHhhhcCCc--EEEECCCCCChhhHh
Q 015454 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (406)
Q Consensus 64 ~~~i~~~~~--~il~~~tGsGKT~~~ 87 (406)
+..+++|.+ ++.-|.||||||++.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 334556776 578899999999775
No 297
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=77.78 E-value=0.82 Score=38.96 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=32.8
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhh--cCCcEEEECCCCCChhhHhH
Q 015454 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~--~~~~~il~~~tGsGKT~~~~ 88 (406)
+..+|+++.-.+.....+...-. ... ....+..+. -.+.+++.||+|+|||..+-
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~--~~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVE--FLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHH--HHH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH--HHH-CHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 55778888777777777764211 000 112333221 12459999999999995443
No 298
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=77.73 E-value=1.5 Score=38.29 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.7
Q ss_pred EEEECCCCCChhhHh
Q 015454 73 VIAQAQSGTGKTSMI 87 (406)
Q Consensus 73 ~il~~~tGsGKT~~~ 87 (406)
+++.|+.|||||...
T Consensus 7 ~~i~G~~GaGKTTll 21 (318)
T 1nij_A 7 TLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEESSSSSCHHHH
T ss_pred EEEEecCCCCHHHHH
Confidence 689999999999543
No 299
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=77.70 E-value=1.5 Score=38.78 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=18.7
Q ss_pred HHhhhcCCc--EEEECCCCCChhhHhH
Q 015454 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 64 ~~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
+..+++|.+ ++.-|.||||||.++.
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 445567776 5778999999997653
No 300
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=77.69 E-value=1.7 Score=38.41 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=20.1
Q ss_pred hHHhhhcCCc--EEEECCCCCChhhHhH
Q 015454 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 63 ~~~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
.+..+++|.+ ++.-|.||||||++..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 4556677876 5778999999998764
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=77.66 E-value=0.81 Score=37.72 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=13.8
Q ss_pred hhhcCCcEEEECCCCCChhhHhH
Q 015454 66 PIIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 66 ~i~~~~~~il~~~tGsGKT~~~~ 88 (406)
.+..|.-+.+.||+|+|||..+-
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp CEECCCEEEEECSCC----CHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHH
Confidence 34557778999999999996543
No 302
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=77.66 E-value=1.8 Score=37.18 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=24.5
Q ss_pred hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcC
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P 109 (406)
+..|.-+++.||+|+|||..+...+...... .+..++++..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~ 72 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAML 72 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeC
Confidence 3456778999999999996544333322222 1324666543
No 303
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=77.64 E-value=1.4 Score=35.46 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=16.4
Q ss_pred hhhcCCcEEEECCCCCChhhHh
Q 015454 66 PIIKGRDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 66 ~i~~~~~~il~~~tGsGKT~~~ 87 (406)
.+..|.-+.+.||+|+|||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5677888999999999999543
No 304
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=77.63 E-value=1.7 Score=39.24 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=20.1
Q ss_pred hHHhhhcCCc--EEEECCCCCChhhHhH
Q 015454 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 63 ~~~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
.+..++.|.+ ++.-|.||||||+++.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4556677877 5778999999998764
No 305
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=77.56 E-value=1.3 Score=35.21 Aligned_cols=16 Identities=38% Similarity=0.767 Sum_probs=13.5
Q ss_pred CcEEEECCCCCChhhH
Q 015454 71 RDVIAQAQSGTGKTSM 86 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~ 86 (406)
+-++|+||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999953
No 306
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=77.50 E-value=1.5 Score=38.72 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=18.5
Q ss_pred HHhhhcCCc--EEEECCCCCChhhHhH
Q 015454 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 64 ~~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
+..+++|.+ ++.-|.||||||.+..
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHhCCCceEEEEECCCCCCCceEec
Confidence 444566776 5778999999997653
No 307
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=77.50 E-value=15 Score=34.87 Aligned_cols=87 Identities=7% Similarity=0.094 Sum_probs=59.3
Q ss_pred HHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH----hcCCCEEEechHHHHHHH
Q 015454 91 VCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMI 166 (406)
Q Consensus 91 i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~l 166 (406)
+...+.....+.++||+|+++.-+..+++.+.+... .+..+..++++....++.... ....+|+|+|. .
T Consensus 278 l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~------~ 350 (579)
T 3sqw_A 278 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------V 350 (579)
T ss_dssp HHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------G
T ss_pred HHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc------h
Confidence 333333334566899999999999999999987532 246677888887665543322 24578999994 2
Q ss_pred HccCCCcCCcceeecchh
Q 015454 167 KRKTLRTRAIKLLVLDES 184 (406)
Q Consensus 167 ~~~~~~~~~~~~vV~DE~ 184 (406)
....+++.++++||.-..
T Consensus 351 ~~~GiDip~v~~VI~~~~ 368 (579)
T 3sqw_A 351 GARGMDFPNVHEVLQIGV 368 (579)
T ss_dssp GTSSCCCTTCCEEEEESC
T ss_pred hhcCCCcccCCEEEEcCC
Confidence 235677888888876553
No 308
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=77.50 E-value=20 Score=29.49 Aligned_cols=72 Identities=7% Similarity=0.075 Sum_probs=50.0
Q ss_pred cceEEEecchhhHHHHHHHHhc----CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-----cc-CCCCCCCCC
Q 015454 273 TQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----WA-RGLDVQQVS 342 (406)
Q Consensus 273 ~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~~-~G~d~~~~~ 342 (406)
.++||.+++++.+..+.+.++. .+..+..++|+.+.......+ ....+|+|+|+. +. ..+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 5899999999988888777654 356778888887655433222 356789999952 11 235677888
Q ss_pred EEEEec
Q 015454 343 LVINYD 348 (406)
Q Consensus 343 ~vi~~~ 348 (406)
.+|+-+
T Consensus 177 ~lViDE 182 (253)
T 1wrb_A 177 YIVLDE 182 (253)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 887644
No 309
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=77.46 E-value=1.3 Score=38.63 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=14.6
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
.+++.||||||||.....
T Consensus 7 ~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999965443
No 310
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=77.29 E-value=2.8 Score=36.13 Aligned_cols=70 Identities=7% Similarity=0.027 Sum_probs=47.5
Q ss_pred cceEEEecchhhHHHHHHHHhcC-----CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCcc------c-CCCCCCC
Q 015454 273 TQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVW------A-RGLDVQQ 340 (406)
Q Consensus 273 ~k~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~------~-~G~d~~~ 340 (406)
.++||.+++++.+..+.+.+... +..+....++...... .....+|+|+|+-. . ..+++..
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 47999999999998887777643 4566667666443211 13566899999632 1 3567778
Q ss_pred CCEEEEecC
Q 015454 341 VSLVINYDL 349 (406)
Q Consensus 341 ~~~vi~~~~ 349 (406)
++++|+-..
T Consensus 236 l~~lVlDEa 244 (300)
T 3fmo_B 236 IKVFVLDEA 244 (300)
T ss_dssp CSEEEETTH
T ss_pred ceEEEEeCH
Confidence 888886443
No 311
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=77.25 E-value=2 Score=37.79 Aligned_cols=49 Identities=27% Similarity=0.243 Sum_probs=30.6
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (406)
.|.-+++.|++|+|||..++-.+..... .+..++|++.- .-..|+..++
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC-CCHHHHHHHH
Confidence 3456899999999999655544444333 34567777653 3345555554
No 312
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=77.17 E-value=1.6 Score=39.36 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=18.6
Q ss_pred HHhhhcCCc--EEEECCCCCChhhHhH
Q 015454 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 64 ~~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
+..++.|.+ ++.-|.||||||++..
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEee
Confidence 344566766 5778999999998754
No 313
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=77.14 E-value=1.9 Score=38.13 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=25.5
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCc
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~ 110 (406)
.|.-+++.||+|+|||..++..+...... +.+++|+.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 34568999999999996655544443322 3457777653
No 314
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=77.12 E-value=2.1 Score=37.93 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=25.5
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCc
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~ 110 (406)
|.-+++.+++|+|||..++..+...... +.+++|+..-
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E 100 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAE 100 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCC
Confidence 4568999999999997665544444332 3357777663
No 315
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=76.99 E-value=1.5 Score=38.89 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=18.8
Q ss_pred HHhhhcCCc--EEEECCCCCChhhHhH
Q 015454 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 64 ~~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
+..++.|.+ ++.-|.||||||+++.
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 444566776 5788999999997654
No 316
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=76.99 E-value=1.1 Score=41.46 Aligned_cols=19 Identities=42% Similarity=0.699 Sum_probs=15.9
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
++++++.||+|+|||..+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4679999999999996554
No 317
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=76.88 E-value=1.6 Score=38.86 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=17.7
Q ss_pred hhhcCCc--EEEECCCCCChhhHhH
Q 015454 66 PIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 66 ~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
.+++|.+ ++.-|.||||||++..
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhCCceEEEEeecCCCCCcceecc
Confidence 4456766 6788999999997654
No 318
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=76.66 E-value=1.6 Score=38.36 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=14.1
Q ss_pred cEEEECCCCCChhhHhH
Q 015454 72 DVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~ 88 (406)
-++|.||||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47899999999996554
No 319
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=76.51 E-value=1.2 Score=35.81 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.0
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
.-+++.|++|||||..+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999996544
No 320
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=76.32 E-value=1 Score=35.67 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=14.8
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
..+++.|++|||||..+-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999996554
No 321
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=76.30 E-value=4.3 Score=35.32 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=13.0
Q ss_pred EEEECCCCCChhhHh
Q 015454 73 VIAQAQSGTGKTSMI 87 (406)
Q Consensus 73 ~il~~~tGsGKT~~~ 87 (406)
+.+.||+|||||..+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999654
No 322
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=76.30 E-value=0.69 Score=39.12 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=15.5
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3569999999999996554
No 323
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=76.11 E-value=1.2 Score=35.34 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=16.7
Q ss_pred cCCcEEEECCCCCChhhHhHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~ 89 (406)
.+..+++.|++|||||...-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456789999999999965543
No 324
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=76.06 E-value=1.9 Score=39.33 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=17.7
Q ss_pred hhhcCCc--EEEECCCCCChhhHhH
Q 015454 66 PIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 66 ~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
.++.|.+ ++.-|.||||||+++.
T Consensus 131 ~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 131 HNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HhhcCCceEEEEeCCCCCCCCEEee
Confidence 4456776 5788999999997754
No 325
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=76.03 E-value=1.2 Score=35.17 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.1
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
-+++.||+|+|||..+-.
T Consensus 4 ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 468999999999965443
No 326
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=75.99 E-value=1.7 Score=38.86 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=23.0
Q ss_pred ChHHHHHhHH--------hhhcCCc--EEEECCCCCChhhHhH
Q 015454 56 PSAIQQRAVM--------PIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 56 l~~~Q~~~~~--------~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
+..-|.+.+. .++.|.+ ++.-|.||||||++..
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 4455666655 3456766 5778999999997653
No 327
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=75.96 E-value=4 Score=33.45 Aligned_cols=72 Identities=13% Similarity=0.168 Sum_probs=49.0
Q ss_pred CcceEEEecchhhHHHHHHHHhcC----CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-c----cC--CCCCCC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-W----AR--GLDVQQ 340 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~----~~--G~d~~~ 340 (406)
..++||.++++..+..+.+.++.. ++.+..++|+.+.......+ +..+|+|+|+- + .. .+++.+
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 357999999999998888877653 47788888886654433322 46789999952 1 12 366677
Q ss_pred CCEEEEec
Q 015454 341 VSLVINYD 348 (406)
Q Consensus 341 ~~~vi~~~ 348 (406)
++++|+-+
T Consensus 172 ~~~lViDE 179 (236)
T 2pl3_A 172 LQMLVLDE 179 (236)
T ss_dssp CCEEEETT
T ss_pred ccEEEEeC
Confidence 88877643
No 328
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=75.78 E-value=1.2 Score=38.21 Aligned_cols=18 Identities=33% Similarity=0.518 Sum_probs=14.5
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
.-+++.||+|||||..+-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 348999999999996544
No 329
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=75.74 E-value=1.4 Score=34.36 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=14.8
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
.+++.+++|||||..+-.
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 589999999999965543
No 330
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=75.73 E-value=1.3 Score=33.60 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=13.2
Q ss_pred cEEEECCCCCChhhHh
Q 015454 72 DVIAQAQSGTGKTSMI 87 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~ 87 (406)
-.++.||+|+|||..+
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3689999999999543
No 331
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=75.67 E-value=3 Score=34.14 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=18.7
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhc
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVD 96 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~ 96 (406)
++++.++.|+|||..++-.......
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5899999999999776654444443
No 332
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=75.60 E-value=1.9 Score=38.92 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=20.0
Q ss_pred hHHhhhcCCc--EEEECCCCCChhhHhH
Q 015454 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 63 ~~~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
.+..++.|.+ ++.-|.||||||++..
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 157 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTMD 157 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEec
Confidence 4556677876 5788999999997753
No 333
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=75.57 E-value=1.3 Score=35.98 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=14.6
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
.+++.||+|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999975543
No 334
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=75.56 E-value=2 Score=38.43 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=18.8
Q ss_pred HHhhhcCCc--EEEECCCCCChhhHhHH
Q 015454 64 VMPIIKGRD--VIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 64 ~~~i~~~~~--~il~~~tGsGKT~~~~~ 89 (406)
+..+++|.+ ++.-|.||||||++..-
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEecc
Confidence 344566766 57889999999987643
No 335
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=75.52 E-value=2 Score=38.41 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=20.9
Q ss_pred HHhHHh---hhcCCcEEEECCCCCChhhHhH
Q 015454 61 QRAVMP---IIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 61 ~~~~~~---i~~~~~~il~~~tGsGKT~~~~ 88 (406)
.+++.. +-+|+.+.+.+|+|+|||....
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 344443 4458999999999999996554
No 336
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=75.49 E-value=1.2 Score=35.35 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=15.5
Q ss_pred CCcEEEECCCCCChhhHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~ 89 (406)
+.-+++.|++|||||...-.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34589999999999965543
No 337
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=75.39 E-value=1.8 Score=38.39 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=25.4
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l 113 (406)
|.-++|.+|+|+|||..++..+..... .+.+++|+..-..+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEeccccc
Confidence 445899999999999654443333222 23457777664433
No 338
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=75.36 E-value=1.4 Score=35.21 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=16.5
Q ss_pred cCCcEEEECCCCCChhhHhHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~ 89 (406)
.+..+++.|+.|||||...-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 356689999999999965543
No 339
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=75.26 E-value=2.8 Score=32.57 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=15.9
Q ss_pred cEEEECCCCCChhhHhHHHHHhhh
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTV 95 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~ 95 (406)
-+.+.|+.|||||.... .++..+
T Consensus 6 ~i~i~G~sGsGKTTl~~-~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLME-KWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHhh
Confidence 36789999999996443 344444
No 340
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=75.24 E-value=1.6 Score=38.86 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=19.7
Q ss_pred hHHhhhcCCc--EEEECCCCCChhhHhH
Q 015454 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 63 ~~~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
.+..++.|.+ ++.-|.||||||++..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 4556677876 5778999999997653
No 341
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=75.23 E-value=1.6 Score=34.34 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=15.2
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
..+++.|++|||||.++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3588999999999965543
No 342
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=75.18 E-value=1.2 Score=38.55 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=15.0
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999996554
No 343
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=75.10 E-value=1.5 Score=35.80 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=15.9
Q ss_pred CCcEEEECCCCCChhhHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~ 89 (406)
+..+++.|++|||||...-.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45689999999999965543
No 344
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=75.01 E-value=1.3 Score=39.27 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.7
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
.+.+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999996554
No 345
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=74.66 E-value=3.9 Score=31.94 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=15.8
Q ss_pred cEEEECCCCCChhhHhHHHHHhhh
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTV 95 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~ 95 (406)
-+++.|+.|+|||.... .++..+
T Consensus 8 ~i~i~G~sGsGKTTl~~-~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLK-KLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHHHH-HHHHHH
T ss_pred EEEEEeCCCCCHHHHHH-HHHHhc
Confidence 47899999999995433 344333
No 346
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=74.65 E-value=1.4 Score=35.77 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=14.6
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
.+++.||+|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999975543
No 347
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=74.60 E-value=2.1 Score=38.13 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=18.5
Q ss_pred HHhhhcCCc--EEEECCCCCChhhHhH
Q 015454 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 64 ~~~i~~~~~--~il~~~tGsGKT~~~~ 88 (406)
+..+++|.+ ++.-|.||||||+++.
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEee
Confidence 344556766 5778999999997654
No 348
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=74.42 E-value=1.6 Score=33.79 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=15.1
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
+.+++.|++|||||.+.-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3588999999999965543
No 349
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=74.37 E-value=1.9 Score=33.91 Aligned_cols=16 Identities=31% Similarity=0.744 Sum_probs=13.2
Q ss_pred cEEEECCCCCChhhHh
Q 015454 72 DVIAQAQSGTGKTSMI 87 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~ 87 (406)
.+.+.||+|+|||..+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4689999999999543
No 350
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=74.35 E-value=2.4 Score=35.47 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=17.1
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.|..+++.|++|+|||...-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 38899999999999996544
No 351
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=74.23 E-value=1.8 Score=35.07 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=20.8
Q ss_pred hHHHHHhHHhhhcCCcEEEECCCCCChhhHhH
Q 015454 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~il~~~tGsGKT~~~~ 88 (406)
++.++.. ..+..+.-+++.|++|||||..+-
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 3344444 234456678999999999996544
No 352
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=74.09 E-value=1.7 Score=34.63 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=16.2
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.+.-+++.|++|||||...-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678999999999996554
No 353
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=74.05 E-value=12 Score=34.93 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=21.9
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcC
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P 109 (406)
.+++.+++|+|||..+...+.... .. +.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~-~~--G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQ-RK--GWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH-HT--TCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-hC--CCeEEEEec
Confidence 377899999999976654433332 21 345666654
No 354
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=74.03 E-value=0.93 Score=36.56 Aligned_cols=24 Identities=17% Similarity=0.021 Sum_probs=17.6
Q ss_pred HhhhcCCcEEEECCCCCChhhHhH
Q 015454 65 MPIIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 65 ~~i~~~~~~il~~~tGsGKT~~~~ 88 (406)
+.+..+.-+.+.|++|||||..+-
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHH
Confidence 344445668899999999996443
No 355
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=73.98 E-value=1.9 Score=37.82 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=15.1
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
.++++.||+|+|||..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 679999999999996444
No 356
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=73.87 E-value=1.3 Score=38.45 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=15.3
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
..+++.||+|+|||..+-
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 679999999999996544
No 357
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=73.70 E-value=1.3 Score=34.92 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=14.3
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
.+++.|++|||||...-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999965543
No 358
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=73.68 E-value=15 Score=30.69 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=51.2
Q ss_pred CcceEEEecchhhHHHHHHHHhc----CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-----c--cCCCCCCC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----W--ARGLDVQQ 340 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~--~~G~d~~~ 340 (406)
..++||.++++.-+..+.+.+++ .+..+..+.|+.+.......+ ..+ .+|+|+|+- + ..++++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 35799999999998888777765 466778888887765544333 233 889999941 1 23467778
Q ss_pred CCEEEEec
Q 015454 341 VSLVINYD 348 (406)
Q Consensus 341 ~~~vi~~~ 348 (406)
++.+|+-+
T Consensus 202 l~~lViDE 209 (262)
T 3ly5_A 202 LQCLVIDE 209 (262)
T ss_dssp CCEEEECS
T ss_pred CCEEEEcC
Confidence 88887643
No 359
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=73.65 E-value=1.7 Score=34.79 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=15.2
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
..+++.|++|||||..+-.
T Consensus 21 ~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4589999999999965543
No 360
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=73.60 E-value=1.6 Score=39.22 Aligned_cols=17 Identities=18% Similarity=0.470 Sum_probs=13.8
Q ss_pred EEEECCCCCChhhHhHH
Q 015454 73 VIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~ 89 (406)
++|.||||+|||..+..
T Consensus 5 i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEECSSSSHHHHHHH
T ss_pred EEEECcchhhHHHHHHH
Confidence 68999999999965443
No 361
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=73.60 E-value=1.4 Score=43.54 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=33.2
Q ss_pred cccccccCCCCHHHHHHHHHCC-CCCChHHHHHhHHh--hhcCCcEEEECCCCCChhhHh
Q 015454 31 AITSFDAMGIKDDLLRGIYQYG-FEKPSAIQQRAVMP--IIKGRDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~-~~~l~~~Q~~~~~~--i~~~~~~il~~~tGsGKT~~~ 87 (406)
+...|++.+.-+...+.|...- +...+| +.+.. +...+.+++.||+|+|||+.+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p---~~f~~~g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHP---DKFLKFGMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCS---GGGSSSCCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCH---HHHHhcCCCCCceEEEecCCCCCchHHH
Confidence 4467888888888888886531 111111 11111 122367999999999999543
No 362
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=73.48 E-value=1.5 Score=39.45 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=15.8
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
..++++.||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3679999999999996544
No 363
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=73.44 E-value=2 Score=34.70 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=14.4
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
.+++.||+||||+..+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999965554
No 364
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=73.43 E-value=1.4 Score=35.59 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=14.5
Q ss_pred CCcEEEECCCCCChhhHh
Q 015454 70 GRDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~ 87 (406)
|.-+.|.||+|||||..+
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456789999999999543
No 365
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=73.31 E-value=1.8 Score=34.62 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=16.5
Q ss_pred hcCCcEEEECCCCCChhhHhH
Q 015454 68 IKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~~~ 88 (406)
..|.-+.+.||+|||||..+-
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 345678899999999996544
No 366
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=73.20 E-value=1.2 Score=39.37 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.7
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
..++++.||+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999996544
No 367
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=73.02 E-value=1.5 Score=35.91 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=15.5
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
...+++.|++|||||..+-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999996544
No 368
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=72.94 E-value=2 Score=37.13 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=16.7
Q ss_pred hcCCcEEEECCCCCChhhHhH
Q 015454 68 IKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~~~ 88 (406)
..|.-+.|.||+|+|||..+-
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~ 144 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCN 144 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 357778999999999995433
No 369
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=72.83 E-value=1.5 Score=40.28 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=30.1
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCChHHHH-HhHHh-hhcCCcEEEECCCCCChhhHhH
Q 015454 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQ-RAVMP-IIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 30 ~~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~-~~~~~-i~~~~~~il~~~tGsGKT~~~~ 88 (406)
.+...|+++.-.+...+.+...-. .|.+. +.+.. ....+.+++.||+|+|||..+-
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 344567776655666666543210 11100 00111 1223679999999999996544
No 370
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=72.74 E-value=1.6 Score=35.55 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=15.9
Q ss_pred CCcEEEECCCCCChhhHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~ 89 (406)
...+++.|++|||||...-.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35689999999999965543
No 371
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=72.74 E-value=2.9 Score=37.22 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=25.1
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~ 111 (406)
|.-++|.+++|+|||..++-.+...... +.+++|+..-.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCC
Confidence 3558999999999996555444443322 33577776543
No 372
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=72.71 E-value=1.6 Score=36.19 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.2
Q ss_pred hcCCcEEEECCCCCChhh
Q 015454 68 IKGRDVIAQAQSGTGKTS 85 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~ 85 (406)
..|.-+.+.||.|||||.
T Consensus 29 ~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 346778999999999995
No 373
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=72.63 E-value=1.4 Score=35.46 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=15.8
Q ss_pred CCcEEEECCCCCChhhHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~ 89 (406)
+.-+++.|++|||||...-.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~ 23 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 45689999999999965543
No 374
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=72.60 E-value=1.5 Score=34.61 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=14.6
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
.+++.|++|||||...-.
T Consensus 8 ~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999975543
No 375
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=72.32 E-value=1.6 Score=34.19 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=15.2
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
|..+++.|+.|||||...-
T Consensus 5 g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567899999999996544
No 376
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=72.32 E-value=2.5 Score=45.41 Aligned_cols=89 Identities=15% Similarity=0.206 Sum_probs=53.4
Q ss_pred CcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhc
Q 015454 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (406)
.-+.+.+|.|||||..++..+.+.... +..++++.+-.+|.... +++++-..
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~---g~~~~~i~~e~~~~~~~---~~~~Gv~~---------------------- 1483 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY---ARKLGVDI---------------------- 1483 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHHH---HHHTTCCG----------------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEecCCCCCHHH---HHHcCCCH----------------------
Confidence 448999999999998777665544332 45678888866665554 44444222
Q ss_pred CCCEEEechHHH---HHHHHccCCCcCCcceeecchhhHHhc
Q 015454 151 GVHVVSGTPGRV---CDMIKRKTLRTRAIKLLVLDESDEMLS 189 (406)
Q Consensus 151 ~~~iii~T~~~l---~~~l~~~~~~~~~~~~vV~DE~h~~~~ 189 (406)
.++++..|+.- +..... ......+++||+|.+-.+..
T Consensus 1484 -~~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1484 -DNLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp -GGCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCC
T ss_pred -HHeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCc
Confidence 12455555332 222111 12234478999999887654
No 377
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=72.29 E-value=1.7 Score=34.90 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.4
Q ss_pred EEEECCCCCChhhHhH
Q 015454 73 VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~ 88 (406)
+.+.||.|||||.+.-
T Consensus 5 i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6799999999996544
No 378
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=71.99 E-value=1.5 Score=34.29 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=11.9
Q ss_pred CCcEEEECCCCCChhhHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~ 89 (406)
+..+++.|++|||||..+-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999975543
No 379
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=71.98 E-value=2.5 Score=35.08 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=16.1
Q ss_pred CCcEEEECCCCCChhhHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~ 89 (406)
...+++.||+|||||..+-.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45689999999999965543
No 380
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=71.95 E-value=1.8 Score=34.68 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=14.1
Q ss_pred cEEEECCCCCChhhHhH
Q 015454 72 DVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~ 88 (406)
.+++.|++|||||...-
T Consensus 17 ~I~l~G~~GsGKsT~~~ 33 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCE 33 (203)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996543
No 381
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=71.94 E-value=12 Score=32.21 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=51.7
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH----hcCCCEEEechHHHHHHHHccCCCcCCc
Q 015454 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (406)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~l~~~~~~~~~~ 176 (406)
+.++||.|+++.-+....+.+... ++.+..++|+.+..++...+ ....+|+|+|. . -...+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----v-a~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----V-AARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----T-TTCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----h-hhcCccccce
Confidence 457999999999999888888664 46778888887665544322 34578999993 2 2346677788
Q ss_pred ceeecch
Q 015454 177 KLLVLDE 183 (406)
Q Consensus 177 ~~vV~DE 183 (406)
++||.=+
T Consensus 98 ~~VI~~d 104 (300)
T 3i32_A 98 DLVVHYR 104 (300)
T ss_dssp SEEEESS
T ss_pred eEEEEcC
Confidence 8777433
No 382
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=71.93 E-value=2.3 Score=34.68 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=15.8
Q ss_pred cCCcEEEECCCCCChhhHhHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~ 89 (406)
+.+-+++.||+||||+..+-.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 334578899999999965544
No 383
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=71.84 E-value=1.8 Score=33.30 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=14.0
Q ss_pred cEEEECCCCCChhhHhH
Q 015454 72 DVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~ 88 (406)
.+++.|++|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999996554
No 384
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=71.50 E-value=2.4 Score=37.46 Aligned_cols=19 Identities=21% Similarity=0.171 Sum_probs=14.8
Q ss_pred cEEEECCCCCChhhHhHHH
Q 015454 72 DVIAQAQSGTGKTSMIALT 90 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~ 90 (406)
-+.+.||+|+|||......
T Consensus 133 i~~I~G~~GsGKTTL~~~l 151 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTL 151 (349)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999655443
No 385
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=71.42 E-value=2.1 Score=40.94 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=13.3
Q ss_pred cEEEECCCCCChhh
Q 015454 72 DVIAQAQSGTGKTS 85 (406)
Q Consensus 72 ~~il~~~tGsGKT~ 85 (406)
++++.||+|+|||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999995
No 386
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=71.39 E-value=2.5 Score=39.16 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=18.1
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhh
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTV 95 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~ 95 (406)
..++++.||+|+|||..+-. +...+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~-la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG-LAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH-HHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH-HHHHH
Confidence 46799999999999965543 33333
No 387
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=71.38 E-value=1.6 Score=35.72 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=16.9
Q ss_pred hcCCcEEEECCCCCChhhHhHH
Q 015454 68 IKGRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~~~~ 89 (406)
..|.-+.+.||+|+|||..+..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3456689999999999965544
No 388
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.20 E-value=3.7 Score=38.49 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=25.6
Q ss_pred CCcceeecchhhHHhccCc--HHHHHHHHHhCCCCceEEEEEecC
Q 015454 174 RAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATL 216 (406)
Q Consensus 174 ~~~~~vV~DE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~ 216 (406)
....+|++||+|.+..... ...+..+++. ....+++++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 4467899999998865432 2344444444 244577777764
No 389
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=71.09 E-value=1.8 Score=34.80 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=16.6
Q ss_pred cCCcEEEECCCCCChhhHhHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~ 89 (406)
.+.-+++.|+.|||||...-.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~ 29 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKL 29 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHH
Confidence 356689999999999965543
No 390
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=70.98 E-value=1.9 Score=34.06 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=13.9
Q ss_pred EEEECCCCCChhhHhHH
Q 015454 73 VIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~ 89 (406)
+++.|++|||||...-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999965543
No 391
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=70.97 E-value=2.9 Score=33.20 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=24.1
Q ss_pred cCCcceeecchhhHH--hccCcHHHHHHHHHhCCCCceEEEEEecC
Q 015454 173 TRAIKLLVLDESDEM--LSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (406)
Q Consensus 173 ~~~~~~vV~DE~h~~--~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 216 (406)
....+++|+||+..+ .+..+...+..++.. ...+++-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 466789999997554 233345555555553 22255546664
No 392
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=70.95 E-value=1.8 Score=34.16 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=16.3
Q ss_pred cCCcEEEECCCCCChhhHhHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~ 89 (406)
.+..+++.|++|||||...-.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 345689999999999965543
No 393
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=70.77 E-value=1.9 Score=34.39 Aligned_cols=17 Identities=24% Similarity=0.433 Sum_probs=13.9
Q ss_pred cEEEECCCCCChhhHhH
Q 015454 72 DVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~ 88 (406)
.+++.|++|||||...-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 37899999999996544
No 394
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=70.72 E-value=1.9 Score=36.27 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.0
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
.-+++.|++|||||..+-.
T Consensus 5 ~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHH
Confidence 3588999999999965543
No 395
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=70.53 E-value=1.6 Score=35.17 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=14.7
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
+.-+.+.||+|||||..+-
T Consensus 6 ~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 4457899999999996443
No 396
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=70.51 E-value=2 Score=34.06 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=14.0
Q ss_pred EEEECCCCCChhhHhHH
Q 015454 73 VIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~ 89 (406)
+++.|+.|||||...-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999965553
No 397
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=70.44 E-value=2.5 Score=34.50 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=15.1
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
..+.+.||+|||||..+-.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588999999999965543
No 398
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=70.42 E-value=1.9 Score=35.74 Aligned_cols=18 Identities=39% Similarity=0.438 Sum_probs=15.3
Q ss_pred hcCCcEEEECCCCCChhh
Q 015454 68 IKGRDVIAQAQSGTGKTS 85 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~ 85 (406)
..|.-+.+.||.|||||.
T Consensus 29 ~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 356778999999999995
No 399
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=70.40 E-value=1.9 Score=34.99 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=15.8
Q ss_pred CCcEEEECCCCCChhhHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~ 89 (406)
+..+++.|++|||||...-.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 35689999999999965543
No 400
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=70.39 E-value=3 Score=37.11 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=13.9
Q ss_pred cEEEECCCCCChhhHhH
Q 015454 72 DVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~ 88 (406)
-++|.||+|+|||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46799999999996553
No 401
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=70.36 E-value=2 Score=34.89 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=15.8
Q ss_pred hcCCcEEEECCCCCChhhH
Q 015454 68 IKGRDVIAQAQSGTGKTSM 86 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~ 86 (406)
..|.-+.+.||.|+|||..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577789999999999953
No 402
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=70.29 E-value=2.1 Score=39.14 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=15.7
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
.+++++.||+|+|||..+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3679999999999996543
No 403
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=70.19 E-value=1.8 Score=33.85 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=13.6
Q ss_pred cEEEECCCCCChhhHhH
Q 015454 72 DVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~ 88 (406)
-.++.||+|+|||..+-
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 46899999999995433
No 404
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=70.19 E-value=2 Score=34.62 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=16.6
Q ss_pred cCCcEEEECCCCCChhhHhHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~ 89 (406)
.+.-+++.|+.|||||...-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356689999999999965543
No 405
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=70.14 E-value=2.8 Score=34.49 Aligned_cols=20 Identities=20% Similarity=0.322 Sum_probs=16.1
Q ss_pred CCcEEEECCCCCChhhHhHH
Q 015454 70 GRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~ 89 (406)
+..+++.|++|||||..+-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45699999999999965543
No 406
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=69.91 E-value=32 Score=30.52 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=51.1
Q ss_pred CcceEEEecchhhHHHHHHHHhc----CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-----ccC-CCCCCCC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----WAR-GLDVQQV 341 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~~~-G~d~~~~ 341 (406)
..++||.++++..+..+.+.++. .+..+..++|+......... ..+..+|+|+|+- +.. ..++.++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCcccccC
Confidence 35899999999988877777654 36788888888765543221 2467789999952 222 3567778
Q ss_pred CEEEEecC
Q 015454 342 SLVINYDL 349 (406)
Q Consensus 342 ~~vi~~~~ 349 (406)
+++|+-+.
T Consensus 165 ~~vIiDEa 172 (400)
T 1s2m_A 165 SLFIMDEA 172 (400)
T ss_dssp CEEEEESH
T ss_pred CEEEEeCc
Confidence 88876543
No 407
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=69.64 E-value=1.9 Score=34.53 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=13.8
Q ss_pred cEEEECCCCCChhhHhH
Q 015454 72 DVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~ 88 (406)
.+.+.|++|||||...-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47899999999996543
No 408
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=69.53 E-value=22 Score=31.41 Aligned_cols=76 Identities=14% Similarity=0.113 Sum_probs=53.9
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHH---H-hcCCCEEEechHHHHHHHHccCCCcCC
Q 015454 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---L-EHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (406)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~iii~T~~~l~~~l~~~~~~~~~ 175 (406)
.+.++||+++++.-+..+++.+...+ ..+..++++.+..++... + ....+|+|+|. .....+++.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEG----HEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTT----CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcC----CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCccc
Confidence 45679999999999999999887753 566778887665544332 2 24478999994 2245677888
Q ss_pred cceeecchhh
Q 015454 176 IKLLVLDESD 185 (406)
Q Consensus 176 ~~~vV~DE~h 185 (406)
+++||.-+..
T Consensus 312 ~~~Vi~~~~p 321 (395)
T 3pey_A 312 VSMVVNYDLP 321 (395)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEcCCC
Confidence 8888865443
No 409
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=69.05 E-value=2.2 Score=34.88 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=14.4
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
.+++.|++|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999965543
No 410
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=68.88 E-value=4.9 Score=34.69 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=14.4
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
-+.+.+++|+|||.....
T Consensus 106 vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHH
Confidence 367999999999965554
No 411
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=68.76 E-value=2.2 Score=35.43 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=15.3
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
+..+++.||+|||||..+-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999996443
No 412
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=68.41 E-value=2.6 Score=34.05 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=14.5
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
.+++.|++|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999965543
No 413
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=68.35 E-value=2.2 Score=39.52 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=30.4
Q ss_pred cccccccCCCCHHHHHHHHHCC--CCCChHHHHHhHHhhh--cCCcEEEECCCCCChhhHhH
Q 015454 31 AITSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~--~~~l~~~Q~~~~~~i~--~~~~~il~~~tGsGKT~~~~ 88 (406)
+..+|+++.=.+..++.+...- +..+ ..+..+- -.+.+++.||+|+|||..+-
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~-----~~~~~~g~~~p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDP-----SKFNRIGARMPKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCT-----HHHHTTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhCh-----HHHhhcCCCCCCeEEEECCCCCCHHHHHH
Confidence 3456777776666666665420 1011 1222221 13569999999999996543
No 414
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=68.21 E-value=3.6 Score=39.53 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=19.2
Q ss_pred HhhhcCCcEEEECCCCCChhhHhH
Q 015454 65 MPIIKGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 65 ~~i~~~~~~il~~~tGsGKT~~~~ 88 (406)
..+..+..+++.||+|+|||..+-
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHH
Confidence 345568899999999999996544
No 415
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=68.08 E-value=2.1 Score=32.92 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=14.9
Q ss_pred hcCCcEEEECCCCCChhh
Q 015454 68 IKGRDVIAQAQSGTGKTS 85 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~ 85 (406)
..|.-+.+.||.|+|||.
T Consensus 31 ~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 445668899999999994
No 416
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=67.97 E-value=3.5 Score=36.47 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=15.6
Q ss_pred CCc--EEEECCCCCChhhHhH
Q 015454 70 GRD--VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~--~il~~~tGsGKT~~~~ 88 (406)
|.+ ++.-|.||||||+++.
T Consensus 83 G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 83 GCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp CCEEEEEEECCTTSSHHHHHH
T ss_pred CceeEEEeeCCCCCCCCEEEe
Confidence 666 5889999999997654
No 417
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=67.91 E-value=2.2 Score=35.55 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=15.7
Q ss_pred hcCCcEEEECCCCCChhhH
Q 015454 68 IKGRDVIAQAQSGTGKTSM 86 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~ 86 (406)
..|.-+.+.||.|+|||..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567789999999999953
No 418
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=67.89 E-value=4.3 Score=28.09 Aligned_cols=34 Identities=9% Similarity=0.200 Sum_probs=30.2
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCceEEEeecC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGD 305 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~ 305 (406)
..++++||.+-..+...+..|...|+++..+.|+
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG 89 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGG 89 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEeccc
Confidence 4689999999888999999999999988888887
No 419
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=67.87 E-value=2.2 Score=35.06 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=15.7
Q ss_pred hcCCcEEEECCCCCChhhH
Q 015454 68 IKGRDVIAQAQSGTGKTSM 86 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~ 86 (406)
.+|.-+.+.||.|+|||..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567789999999999953
No 420
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=67.86 E-value=3.3 Score=33.51 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=47.8
Q ss_pred CcceEEEecchhhHHHHHHHHhcC--------CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-----ccC-CCC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRGY--------NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----WAR-GLD 337 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~~~-G~d 337 (406)
..++||.++++..+..+.+.+++. +..+..++|+.+...... . ..+..+|+|+|+. +.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~-~~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---K-LNVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---C-CSSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---H-cCCCCCEEEeCHHHHHHHHHcCCCC
Confidence 358999999999888887776542 567888888865432211 1 1246789999952 222 356
Q ss_pred CCCCCEEEEec
Q 015454 338 VQQVSLVINYD 348 (406)
Q Consensus 338 ~~~~~~vi~~~ 348 (406)
+..++.+|+-+
T Consensus 148 ~~~~~~lViDE 158 (219)
T 1q0u_A 148 VHTAHILVVDE 158 (219)
T ss_dssp GGGCCEEEECS
T ss_pred cCcceEEEEcC
Confidence 66778777643
No 421
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=67.83 E-value=2.2 Score=36.29 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=15.1
Q ss_pred hcCCcEEEECCCCCChhh
Q 015454 68 IKGRDVIAQAQSGTGKTS 85 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~ 85 (406)
.+|.-+.+.||.|||||.
T Consensus 32 ~~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKST 49 (275)
T ss_dssp ETTSEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 346778999999999995
No 422
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=67.52 E-value=4 Score=28.77 Aligned_cols=35 Identities=9% Similarity=0.241 Sum_probs=30.8
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCceEEEeecCC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDM 306 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 306 (406)
..++++||.+-..+...+..|...|+++..+.|++
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~ 89 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGI 89 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcH
Confidence 35899999998889999999999999888888873
No 423
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=67.50 E-value=2.1 Score=38.20 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=13.3
Q ss_pred cEEEECCCCCChhhHh
Q 015454 72 DVIAQAQSGTGKTSMI 87 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~ 87 (406)
-.++.|+||+|||..+
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3689999999999543
No 424
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=67.46 E-value=2.3 Score=35.74 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=15.8
Q ss_pred hcCCcEEEECCCCCChhhH
Q 015454 68 IKGRDVIAQAQSGTGKTSM 86 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~ 86 (406)
..|.-+.+.||.|+|||..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567789999999999953
No 425
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=67.43 E-value=2.6 Score=33.58 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=23.0
Q ss_pred EEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHH
Q 015454 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~ 119 (406)
+.+.|++|||||.+.-... ..+ + +-+...-.++.+...
T Consensus 15 IgltG~~GSGKSTva~~L~-~~l-----g---~~vid~D~~~~~~~~ 52 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILK-NKY-----G---AHVVNVDRIGHEVLE 52 (192)
T ss_dssp EEEECSTTSSHHHHHHHHH-HHH-----C---CEEEEHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH-Hhc-----C---CEEEECcHHHHHHHH
Confidence 6899999999997654322 211 1 334455666555543
No 426
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=67.11 E-value=25 Score=23.48 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=57.1
Q ss_pred EEecccccHHHHHHHHHhhcCCcceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEc
Q 015454 251 VAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT 329 (406)
Q Consensus 251 ~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t 329 (406)
..+...+........+.......+++|..+.......+.+.+...|+++..+-.+.+..+-.+.-+...+....|--.|
T Consensus 30 rdvndsdelkkemkklaeeknfekiliisndkqllkemlelisklgykvflllqdqdeneleefkrkiesqgyevrkvt 108 (134)
T 2lci_A 30 RDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVT 108 (134)
T ss_dssp EEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEEC
T ss_pred eecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecC
Confidence 3444444455556666666667899999999998888999999999999999888887776665555555555554444
No 427
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=66.92 E-value=2.4 Score=35.88 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.2
Q ss_pred hcCCcEEEECCCCCChhh
Q 015454 68 IKGRDVIAQAQSGTGKTS 85 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~ 85 (406)
..|.-+.+.||.|+|||.
T Consensus 35 ~~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKST 52 (266)
T ss_dssp ETTCEEEEECCTTSCHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 346778999999999995
No 428
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=66.73 E-value=1.8 Score=36.16 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=14.6
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
..+++.|++|||||..+-
T Consensus 33 ~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEEESCGGGTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999996544
No 429
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=66.62 E-value=6.6 Score=33.86 Aligned_cols=19 Identities=47% Similarity=0.690 Sum_probs=14.9
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
+.-+.+.||+|+|||...-
T Consensus 102 g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3457899999999996544
No 430
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=66.60 E-value=5.1 Score=34.73 Aligned_cols=18 Identities=11% Similarity=0.030 Sum_probs=14.3
Q ss_pred CCcEEEECCCCCChhhHh
Q 015454 70 GRDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~ 87 (406)
|.-+.|.||+|||||..+
T Consensus 90 g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCchHHHHH
Confidence 445789999999999544
No 431
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=66.57 E-value=2.5 Score=35.54 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.2
Q ss_pred hcCCcEEEECCCCCChhh
Q 015454 68 IKGRDVIAQAQSGTGKTS 85 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~ 85 (406)
..|.-+.+.||.|+|||.
T Consensus 31 ~~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKST 48 (257)
T ss_dssp ETTCEEEEECSTTSSHHH
T ss_pred eCCCEEEEECCCCCCHHH
Confidence 346778899999999995
No 432
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=66.44 E-value=2.6 Score=36.61 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=17.0
Q ss_pred cCCcEEEECCCCCChhhHhHHHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTV 91 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i 91 (406)
.+..+++.||+|+|||..+...+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA 144 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALG 144 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 34557999999999996555433
No 433
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=66.39 E-value=2.2 Score=34.94 Aligned_cols=17 Identities=41% Similarity=0.550 Sum_probs=14.7
Q ss_pred cCCcEEEECCCCCChhh
Q 015454 69 KGRDVIAQAQSGTGKTS 85 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~ 85 (406)
.|.-+.+.||.|+|||.
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46678899999999995
No 434
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=66.35 E-value=2.5 Score=35.05 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=15.5
Q ss_pred hcCCcEEEECCCCCChhhH
Q 015454 68 IKGRDVIAQAQSGTGKTSM 86 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~ 86 (406)
..|.-+.+.||.|+|||..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3467788999999999953
No 435
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=65.97 E-value=2.8 Score=33.68 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=13.6
Q ss_pred cEEEECCCCCChhhHhH
Q 015454 72 DVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~ 88 (406)
-.++.||+|+|||.++-
T Consensus 25 ~~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLD 41 (203)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 46899999999995543
No 436
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=65.91 E-value=48 Score=26.21 Aligned_cols=114 Identities=12% Similarity=0.173 Sum_probs=72.7
Q ss_pred cceEEEecchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEc----CcccCCCCCCCCCEEEEec
Q 015454 273 TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT----DVWARGLDVQQVSLVINYD 348 (406)
Q Consensus 273 ~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t----~~~~~G~d~~~~~~vi~~~ 348 (406)
.+++++++..+..+.+.+.+.+.+..+..+.+.+.. -....+.. ....+|+|+- ..+..-+++| ...
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~--~v~~a~~~-~~~~dVIISRGgta~~lr~~~~iP------VV~ 75 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKNFIPITKTASLTR--ASKIAFGL-QDEVDAIISRGATSDYIKKSVSIP------SIS 75 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHH--HHHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSC------EEE
T ss_pred CcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHH--HHHHHHHh-cCCCeEEEECChHHHHHHHhCCCC------EEE
Confidence 578888888887776666666666677777777533 33444445 6778899985 2344556655 234
Q ss_pred CCCChhhhHhhhhhccCCCCceeEEEEeccCcHHHHHHHHHHHcccccc
Q 015454 349 LPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDE 397 (406)
Q Consensus 349 ~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
.+.|..++++.+-++.+.+. +.-++-.++-...+..+.+.+..++.-
T Consensus 76 I~~s~~Dil~al~~a~~~~~--kIavvg~~~~~~~~~~~~~ll~~~i~~ 122 (196)
T 2q5c_A 76 IKVTRFDTMRAVYNAKRFGN--ELALIAYKHSIVDKHEIEAMLGVKIKE 122 (196)
T ss_dssp ECCCHHHHHHHHHHHGGGCS--EEEEEEESSCSSCHHHHHHHHTCEEEE
T ss_pred EcCCHhHHHHHHHHHHhhCC--cEEEEeCcchhhHHHHHHHHhCCceEE
Confidence 46888899999988877654 333333333344556677777665543
No 437
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=65.82 E-value=2.8 Score=39.67 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=16.3
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.+..+++.||+|+|||..+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36779999999999996443
No 438
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=65.77 E-value=4.5 Score=28.15 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=30.1
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCceEEEeecC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGD 305 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~ 305 (406)
..++++||.+-..+...+..|...|+++..+.|+
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG 89 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGG 89 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCC
Confidence 4689999999888999999999999988888887
No 439
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=65.68 E-value=2.6 Score=35.46 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.0
Q ss_pred hcCCcEEEECCCCCChhh
Q 015454 68 IKGRDVIAQAQSGTGKTS 85 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~ 85 (406)
..|.-+.+.||.|+|||.
T Consensus 30 ~~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKST 47 (262)
T ss_dssp CTTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 346678899999999995
No 440
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=65.67 E-value=2.2 Score=35.48 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=15.4
Q ss_pred hcCCcEEEECCCCCChhhH
Q 015454 68 IKGRDVIAQAQSGTGKTSM 86 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~ 86 (406)
..|.-+.+.||.|+|||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3466789999999999953
No 441
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=65.62 E-value=3.8 Score=34.21 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=15.9
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.+..+.|.||+|||||..+-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35668999999999996544
No 442
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=65.61 E-value=2.6 Score=35.17 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.3
Q ss_pred hcCCcEEEECCCCCChhh
Q 015454 68 IKGRDVIAQAQSGTGKTS 85 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~ 85 (406)
..|.-+.+.||.|+|||.
T Consensus 24 ~~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKST 41 (249)
T ss_dssp ETTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 356778999999999995
No 443
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=65.29 E-value=30 Score=31.30 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=50.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH----hcCCCEEEechHHHHHHHHccCCCcCCccee
Q 015454 104 ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (406)
Q Consensus 104 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~l~~~~~~~~~~~~v 179 (406)
+||+|+++.-+..+.+.+... +..+..++|+....++...+ .....|+|+|. +-...+++.++++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCEE
Confidence 999999999999999988775 36677888887765544332 24578999994 23456778888887
Q ss_pred ec
Q 015454 180 VL 181 (406)
Q Consensus 180 V~ 181 (406)
|.
T Consensus 373 I~ 374 (434)
T 2db3_A 373 IN 374 (434)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 444
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=65.16 E-value=2.8 Score=35.21 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=14.7
Q ss_pred cCCcEEEECCCCCChhh
Q 015454 69 KGRDVIAQAQSGTGKTS 85 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~ 85 (406)
.|.-+.+.||.|+|||.
T Consensus 40 ~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 46678999999999995
No 445
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=65.15 E-value=5.9 Score=34.14 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=14.7
Q ss_pred CcEEEECCCCCChhhHhHH
Q 015454 71 RDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~~ 89 (406)
.-+.+.||+|+|||...-.
T Consensus 101 ~vi~lvG~nGsGKTTll~~ 119 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGK 119 (302)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHH
Confidence 3478999999999965443
No 446
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=64.88 E-value=2.8 Score=35.32 Aligned_cols=18 Identities=33% Similarity=0.649 Sum_probs=15.1
Q ss_pred cCCcEEEECCCCCChhhH
Q 015454 69 KGRDVIAQAQSGTGKTSM 86 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~ 86 (406)
+|.-+.+.||.|+|||..
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 466788999999999953
No 447
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=64.83 E-value=3 Score=33.81 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=14.4
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
.-+.+.|+.|||||.+.-
T Consensus 5 ~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347899999999996544
No 448
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=64.65 E-value=2.9 Score=35.46 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=15.3
Q ss_pred hcCCcEEEECCCCCChhh
Q 015454 68 IKGRDVIAQAQSGTGKTS 85 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~ 85 (406)
..|.-+.|.||.|+|||.
T Consensus 43 ~~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKST 60 (271)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 356778999999999995
No 449
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=64.62 E-value=2.9 Score=35.33 Aligned_cols=18 Identities=22% Similarity=0.562 Sum_probs=15.1
Q ss_pred hcCCcEEEECCCCCChhh
Q 015454 68 IKGRDVIAQAQSGTGKTS 85 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~ 85 (406)
..|.-+.+.||.|+|||.
T Consensus 31 ~~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKST 48 (266)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 346778899999999995
No 450
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=64.55 E-value=6.8 Score=34.07 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=14.3
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
-+.+.+++|+|||.....
T Consensus 107 vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367889999999966554
No 451
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=64.53 E-value=2.8 Score=35.13 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.2
Q ss_pred hcCCcEEEECCCCCChhh
Q 015454 68 IKGRDVIAQAQSGTGKTS 85 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~ 85 (406)
..|.-+.+.||.|+|||.
T Consensus 29 ~~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKST 46 (253)
T ss_dssp ETTCEEEEECCSSSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 346778899999999995
No 452
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=64.46 E-value=8 Score=36.35 Aligned_cols=74 Identities=11% Similarity=0.177 Sum_probs=47.8
Q ss_pred CcceEEEecchhhHHHHHHHHhcC----CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-----ccCC-C-CCCC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----WARG-L-DVQQ 340 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~~~G-~-d~~~ 340 (406)
..++||.++++..+..+.+.+... ++.+..++|+.+...+...+. ...+|+|+|+- +..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 468999999998887777777654 889999999976554332221 24679999953 2223 3 5667
Q ss_pred CCEEEEecC
Q 015454 341 VSLVINYDL 349 (406)
Q Consensus 341 ~~~vi~~~~ 349 (406)
+++||+-..
T Consensus 131 ~~~vViDEa 139 (556)
T 4a2p_A 131 FTLMIFDEC 139 (556)
T ss_dssp CSEEEEETG
T ss_pred CCEEEEECC
Confidence 888876443
No 453
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=64.41 E-value=6.4 Score=36.96 Aligned_cols=73 Identities=14% Similarity=0.204 Sum_probs=49.2
Q ss_pred CcceEEEecchhhHHHHHHHHhc----CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-----ccCC-C-CCCC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----WARG-L-DVQQ 340 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~~~G-~-d~~~ 340 (406)
..++||+++++..+..+.+.+.. .++.+..++|+.+...+...+. +..+|+|+|+- +..+ + ++..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 56899999999888777776655 3889999999986554322221 24789999852 2222 3 4556
Q ss_pred CCEEEEec
Q 015454 341 VSLVINYD 348 (406)
Q Consensus 341 ~~~vi~~~ 348 (406)
+++||+-.
T Consensus 128 ~~~vViDE 135 (555)
T 3tbk_A 128 FTLMIFDE 135 (555)
T ss_dssp CSEEEETT
T ss_pred CCEEEEEC
Confidence 77777643
No 454
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=64.29 E-value=39 Score=29.32 Aligned_cols=73 Identities=12% Similarity=0.180 Sum_probs=50.2
Q ss_pred CCcceEEEecchhhHHHHHHHHhc----CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-----cc-CCCCCCC
Q 015454 271 TITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----WA-RGLDVQQ 340 (406)
Q Consensus 271 ~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~~-~G~d~~~ 340 (406)
...++||.++++..+..+.+.+.. .+..+..++|+.........+. ..+|+|+|+. +. ..+++..
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCccccc
Confidence 346899999999988888777765 4677888888877655433332 5789999952 11 2355677
Q ss_pred CCEEEEec
Q 015454 341 VSLVINYD 348 (406)
Q Consensus 341 ~~~vi~~~ 348 (406)
++++|+-+
T Consensus 148 ~~~iIiDE 155 (367)
T 1hv8_A 148 VKYFILDE 155 (367)
T ss_dssp CCEEEEET
T ss_pred CCEEEEeC
Confidence 77777643
No 455
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=64.27 E-value=10 Score=37.74 Aligned_cols=73 Identities=11% Similarity=0.186 Sum_probs=47.1
Q ss_pred CcceEEEecchhhHHHHHHHHhcC----CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-----ccCC-C-CCCC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----WARG-L-DVQQ 340 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~~~G-~-d~~~ 340 (406)
.+++||.++++..+..+.+.++.. ++.+..++|+.+...+...+. +..+|+|+|+- +..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 578999999998888777766554 889999999986554332221 35789999952 1222 3 4556
Q ss_pred CCEEEEec
Q 015454 341 VSLVINYD 348 (406)
Q Consensus 341 ~~~vi~~~ 348 (406)
+++||+-.
T Consensus 372 ~~~iViDE 379 (797)
T 4a2q_A 372 FTLMIFDE 379 (797)
T ss_dssp CSEEEETT
T ss_pred CCEEEEEC
Confidence 77777643
No 456
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=64.17 E-value=18 Score=32.24 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=51.6
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHH---H-hcCCCEEEechHHHHHHHHccCCCcCCc
Q 015454 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---L-EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (406)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~iii~T~~~l~~~l~~~~~~~~~~ 176 (406)
+.++||+|+++.-+...++.+...+ ..+..++++....++... + ....+|+|+|. .....+++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKEG----HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTT----CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCC----CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCC
Confidence 4579999999999999999998753 566778888765554332 2 24578999994 22456778888
Q ss_pred ceeec
Q 015454 177 KLLVL 181 (406)
Q Consensus 177 ~~vV~ 181 (406)
++||.
T Consensus 336 ~~Vi~ 340 (412)
T 3fht_A 336 SVVIN 340 (412)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88874
No 457
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=63.98 E-value=3.6 Score=32.72 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=14.0
Q ss_pred cEEEECCCCCChhhHhH
Q 015454 72 DVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~ 88 (406)
.+.|.|++|||||.+.-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996544
No 458
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=63.68 E-value=3 Score=35.54 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=15.2
Q ss_pred hcCCcEEEECCCCCChhh
Q 015454 68 IKGRDVIAQAQSGTGKTS 85 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~ 85 (406)
..|.-+.+.||.|+|||.
T Consensus 45 ~~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTT 62 (279)
T ss_dssp ETTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 346778999999999995
No 459
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=63.68 E-value=19 Score=31.82 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=51.1
Q ss_pred CCcceEEEecchhhHHHHHHHHhc----CCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-----c-cCCCCCCC
Q 015454 271 TITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----W-ARGLDVQQ 340 (406)
Q Consensus 271 ~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~-~~G~d~~~ 340 (406)
...++||.++++..+..+.+.+.. .+..+..++|+.+..+....+. ..+|+|+|+- + ...++...
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 345899999999988887777654 4678889999988766554443 4679999842 1 12355667
Q ss_pred CCEEEEec
Q 015454 341 VSLVINYD 348 (406)
Q Consensus 341 ~~~vi~~~ 348 (406)
+++||+-+
T Consensus 163 ~~~vIiDE 170 (394)
T 1fuu_A 163 IKMFILDE 170 (394)
T ss_dssp CCEEEEET
T ss_pred CcEEEEEC
Confidence 77777643
No 460
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=62.92 E-value=4.1 Score=38.10 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=30.5
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (406)
.|.-++|.|++|+|||..++-.+.+..... +.+++|+.-- .-..|+..++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEecc-CCHHHHHHHH
Confidence 345589999999999965555444443321 3457777653 2344555554
No 461
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=62.88 E-value=3.6 Score=32.07 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=17.2
Q ss_pred CCcEEEECCCCCChhhHhHHHH
Q 015454 70 GRDVIAQAQSGTGKTSMIALTV 91 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i 91 (406)
|..+++.|+.|+|||..++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 5678999999999996655433
No 462
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=62.83 E-value=2.9 Score=34.71 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=15.3
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.+.-+.+.||.|||||..+-
T Consensus 24 ~g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 34457899999999996544
No 463
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=62.80 E-value=4 Score=34.44 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=15.6
Q ss_pred hcCCcEEEECCCCCChhhH
Q 015454 68 IKGRDVIAQAQSGTGKTSM 86 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~ 86 (406)
..|.-+.+.||.|+|||..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3467789999999999953
No 464
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=62.75 E-value=4.4 Score=40.13 Aligned_cols=19 Identities=21% Similarity=0.421 Sum_probs=16.0
Q ss_pred CCcEEEECCCCCChhhHhH
Q 015454 70 GRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~ 88 (406)
..++++.||+|+|||.++-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999996554
No 465
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=62.73 E-value=4 Score=34.03 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=15.6
Q ss_pred hcCCcEEEECCCCCChhhH
Q 015454 68 IKGRDVIAQAQSGTGKTSM 86 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~ 86 (406)
..|.-+.+.||.|+|||..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3467788999999999954
No 466
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=62.72 E-value=3.3 Score=35.50 Aligned_cols=17 Identities=18% Similarity=0.351 Sum_probs=14.0
Q ss_pred cEEEECCCCCChhhHhH
Q 015454 72 DVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~ 88 (406)
-+++.|++|||||..+-
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999996544
No 467
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=62.62 E-value=5 Score=35.84 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=21.8
Q ss_pred HHHHhHHhh---hcCCcEEEECCCCCChhhHh
Q 015454 59 IQQRAVMPI---IKGRDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 59 ~Q~~~~~~i---~~~~~~il~~~tGsGKT~~~ 87 (406)
.-.+++..+ -+|+...+.++.|+|||..+
T Consensus 161 tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 161 YSTRLIDLFAPIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp HHHHHHHHHSCCBTTCEEEEEECTTCCHHHHH
T ss_pred ccchhhhhcccccCCceEEEecCCCCChhHHH
Confidence 334555544 45899999999999999655
No 468
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=62.46 E-value=3.3 Score=46.85 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.5
Q ss_pred hhcCCcEEEECCCCCChhhHh
Q 015454 67 IIKGRDVIAQAQSGTGKTSMI 87 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~ 87 (406)
+..++++++.||||+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 345789999999999999655
No 469
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=62.32 E-value=11 Score=38.83 Aligned_cols=75 Identities=19% Similarity=0.324 Sum_probs=55.5
Q ss_pred CcceEEEecchhhHHHHHHHHhc----CCc----eEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-ccCCCC-CCCC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRG----YNF----TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-WARGLD-VQQV 341 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~----~~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~~~G~d-~~~~ 341 (406)
..++||.++++..+..+.+.++. .++ .+..++|+.+...+....+.+.+ .+|+|+|+- +..-+. +..+
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l 176 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHF 176 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccC
Confidence 36899999999998888777754 356 78999999998888777777766 899999962 222121 5567
Q ss_pred CEEEEec
Q 015454 342 SLVINYD 348 (406)
Q Consensus 342 ~~vi~~~ 348 (406)
+++|+-+
T Consensus 177 ~~lViDE 183 (1054)
T 1gku_B 177 DFIFVDD 183 (1054)
T ss_dssp SEEEESC
T ss_pred CEEEEeC
Confidence 7777543
No 470
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=62.30 E-value=27 Score=34.68 Aligned_cols=57 Identities=16% Similarity=0.074 Sum_probs=42.7
Q ss_pred hcCCcceEEEecchhhHHHHHHHHh----cCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 015454 269 TLTITQAVIFCNTKRKVDWLTEKMR----GYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV 331 (406)
Q Consensus 269 ~~~~~k~lif~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~ 331 (406)
...+.+++|.++|+.-|...++.+. ..|+.+..+.|+++...+.... .++|+|+|+.
T Consensus 112 ~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 112 ALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp HTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred HHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 3344689999999998877666654 4689999999999876554332 3789999963
No 471
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=62.28 E-value=4.9 Score=33.71 Aligned_cols=52 Identities=6% Similarity=0.093 Sum_probs=31.4
Q ss_pred CCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015454 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (406)
Q Consensus 70 ~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (406)
|..+++.+++|+|||...+..+.+.+.. +.++++++= .+-..+..+.+..++
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~---Ge~~~~~~~-~e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKS---DNLVGMFSI-SYPLQLIIRILSRFG 72 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHT---TCEEEEEEC-SSCHHHHHHHHHHTT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHC---CCcEEEEEE-eCCHHHHHHHHHHcC
Confidence 3457888788888884444444455543 345666654 444566666666654
No 472
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=62.21 E-value=25 Score=34.84 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=51.8
Q ss_pred hhcCCcceEEEecchhhHHHHHHHHh----cCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-c-----c----
Q 015454 268 DTLTITQAVIFCNTKRKVDWLTEKMR----GYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-W-----A---- 333 (406)
Q Consensus 268 ~~~~~~k~lif~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~-----~---- 333 (406)
....+..++|.+++++-|...++.+. ..|+.+..+.|+++..++.... .++|+++|+. + .
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 33445689999999998887776654 4689999999999887655432 3689999962 2 1
Q ss_pred ---CCCCCCCCCEEEE
Q 015454 334 ---RGLDVQQVSLVIN 346 (406)
Q Consensus 334 ---~G~d~~~~~~vi~ 346 (406)
..+++..++++|.
T Consensus 194 ~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred cchhhhcccCCCEEEE
Confidence 1355667777765
No 473
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=62.10 E-value=3.6 Score=34.30 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.2
Q ss_pred cEEEECCCCCChhhHhH
Q 015454 72 DVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~ 88 (406)
-+.|.|++|||||.++-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996554
No 474
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=61.56 E-value=6 Score=27.63 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=29.3
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCceEEEeecC
Q 015454 272 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGD 305 (406)
Q Consensus 272 ~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~ 305 (406)
+.++++||.+-..+...+..|.+.|+....+.|+
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG 89 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGG 89 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecCh
Confidence 3589999999888888999999999988777776
No 475
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=61.53 E-value=4.3 Score=32.42 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=14.3
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
.-+.+.|+.|||||..+-
T Consensus 23 ~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347899999999996543
No 476
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=61.52 E-value=15 Score=33.44 Aligned_cols=55 Identities=5% Similarity=-0.099 Sum_probs=38.9
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHHhcCCCEEEech
Q 015454 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTP 159 (406)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~ 159 (406)
+.++||+||++.-+...++.+.+. +..+..++++........-.....+|+|+|.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 347999999999999999998876 4677778876322211122235589999994
No 477
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=61.49 E-value=3.6 Score=36.15 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=13.2
Q ss_pred EEEECCCCCChhhHhH
Q 015454 73 VIAQAQSGTGKTSMIA 88 (406)
Q Consensus 73 ~il~~~tGsGKT~~~~ 88 (406)
.++.||+|+|||..+-
T Consensus 26 ~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLD 41 (339)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5899999999996543
No 478
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=61.33 E-value=2.5 Score=36.55 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=15.8
Q ss_pred hcCCcEEEECCCCCChhhH
Q 015454 68 IKGRDVIAQAQSGTGKTSM 86 (406)
Q Consensus 68 ~~~~~~il~~~tGsGKT~~ 86 (406)
..|.-+.+.||+|+|||..
T Consensus 78 ~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 3467789999999999954
No 479
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=61.23 E-value=3.5 Score=38.38 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=30.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHhHHhhh--cCCcEEEECCCCCChhhHhH
Q 015454 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 31 ~~~~~~~~~l~~~i~~~l~~~~~~~l~~~Q~~~~~~i~--~~~~~il~~~tGsGKT~~~~ 88 (406)
+..+|+++.-.+.....+...-. .+. ....+..+- -.+.+++.||+|+|||..+-
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~--~~~~~~~lg~~ip~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLK--NPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHH--CGGGTTTTSCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-Hhh--chhhhhhccCCCCceEEEECCCCCCHHHHHH
Confidence 45678887766777666654210 000 001111111 12459999999999996443
No 480
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=60.32 E-value=35 Score=23.96 Aligned_cols=64 Identities=16% Similarity=0.029 Sum_probs=40.4
Q ss_pred HHHHHHHhhcCCcceEEEe------cchhhHHHHHHHHhcCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEE
Q 015454 261 DTLCDLYDTLTITQAVIFC------NTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLI 327 (406)
Q Consensus 261 ~~l~~~~~~~~~~k~lif~------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli 327 (406)
..+..+++. .+++||. ++...|....+.|.+.|+....+.=..+...+..+.+.........++
T Consensus 7 ~~v~~~i~~---~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~if 76 (111)
T 3zyw_A 7 LRLKKLTHA---APCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY 76 (111)
T ss_dssp HHHHHHHTS---SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHHhc---CCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEE
Confidence 344444444 5799998 467788999999999988766665444555555554433333344443
No 481
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=60.27 E-value=25 Score=34.06 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=56.2
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHH---H-hcCCCEEEechHHHHHHHHccCCCcCC
Q 015454 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---L-EHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (406)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~iii~T~~~l~~~l~~~~~~~~~ 175 (406)
.+.++||+|+++..+..+.+.+...+ +.+..++++....++... + ....+|+|+|. +....+++..
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~g----i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIG----IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcC----CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccCC
Confidence 35689999999999999999888753 566677877665544333 2 24578999984 1245677888
Q ss_pred cceeecchhhHH
Q 015454 176 IKLLVLDESDEM 187 (406)
Q Consensus 176 ~~~vV~DE~h~~ 187 (406)
+++||+-+++..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 898888887543
No 482
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=60.22 E-value=2.3 Score=33.20 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=13.9
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
-+.+.+++|||||..+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~ 21 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITR 21 (171)
T ss_dssp EEEEEESCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999965443
No 483
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=60.03 E-value=5.1 Score=35.75 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=15.9
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.+..+++.||+|+|||..+-
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~ 187 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAA 187 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35678999999999995443
No 484
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=59.90 E-value=5.7 Score=27.01 Aligned_cols=34 Identities=9% Similarity=0.218 Sum_probs=29.1
Q ss_pred cceEEEecchhhHHHHHHHHhcCCceEEEeecCC
Q 015454 273 TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDM 306 (406)
Q Consensus 273 ~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 306 (406)
.++++||.+-..+...+..|...|+.+..+.|++
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 87 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGL 87 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccH
Confidence 6799999998888889999999998877777774
No 485
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=59.72 E-value=3.7 Score=34.97 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=14.7
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
-+.+.|+.|||||.++-.
T Consensus 77 iI~I~G~~GSGKSTva~~ 94 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQR 94 (281)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 488999999999965543
No 486
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=59.70 E-value=3.6 Score=35.26 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=15.1
Q ss_pred cCCcEEEECCCCCChhhH
Q 015454 69 KGRDVIAQAQSGTGKTSM 86 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~ 86 (406)
.|.-+.+.||.|+|||..
T Consensus 63 ~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467789999999999953
No 487
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=59.68 E-value=8.1 Score=34.18 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=14.3
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
-+.+.||+|+|||...-.
T Consensus 159 vi~lvG~nGsGKTTll~~ 176 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGK 176 (359)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHH
Confidence 378999999999965443
No 488
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=59.53 E-value=5.2 Score=34.22 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=13.6
Q ss_pred cEEEECCCCCChhhHhH
Q 015454 72 DVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~ 88 (406)
-+.|.|++|||||..+-
T Consensus 33 ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36799999999996543
No 489
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=59.47 E-value=8.4 Score=33.61 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=26.4
Q ss_pred cceeecchhhHHh-ccCcHHHHHHHHHhCCCCceEEEEEecCChHHHHHHHh
Q 015454 176 IKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTK 226 (406)
Q Consensus 176 ~~~vV~DE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~ 226 (406)
.+++++|.+.... .......+..+.+.+.+...++.+.++...+.......
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~ 263 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQ 263 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHH
Confidence 4567778765432 12233344444444445555667777665554444433
No 490
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=59.18 E-value=4.4 Score=32.32 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.3
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
.+.+.|+.|||||.++-.
T Consensus 4 ~i~i~G~~GsGKst~~~~ 21 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARR 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999965543
No 491
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=59.18 E-value=25 Score=31.38 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=51.3
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhccCcceeEEEEECCcchHHhHHHH----hcCCCEEEechHHHHHHHHccCCCcCCc
Q 015454 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (406)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~l~~~~~~~~~~ 176 (406)
..++||+|+++.-+....+.+...+ ..+..++++....++.... .....|+|+|. .....+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREAN----FTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTT----CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhCC----CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccC
Confidence 3479999999999999998887753 5677788887655443322 24578999994 22456777888
Q ss_pred ceeecc
Q 015454 177 KLLVLD 182 (406)
Q Consensus 177 ~~vV~D 182 (406)
++||.-
T Consensus 346 ~~Vi~~ 351 (410)
T 2j0s_A 346 SLIINY 351 (410)
T ss_dssp EEEEES
T ss_pred CEEEEE
Confidence 887753
No 492
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=58.83 E-value=10 Score=31.18 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=47.7
Q ss_pred cceEEEecchhhHHHHHHHHhcC----CceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-----ccC---CCCCCC
Q 015454 273 TQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----WAR---GLDVQQ 340 (406)
Q Consensus 273 ~k~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~~~---G~d~~~ 340 (406)
.++||.+++++.+..+.+.+.+. +..+..++++.... ........+..+|+|+|+- +.. .+++.+
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 47999999999998888887653 56666666542111 1111223467789999942 112 477888
Q ss_pred CCEEEEec
Q 015454 341 VSLVINYD 348 (406)
Q Consensus 341 ~~~vi~~~ 348 (406)
++++|+-+
T Consensus 176 ~~~lViDE 183 (245)
T 3dkp_A 176 VEWLVVDE 183 (245)
T ss_dssp CCEEEESS
T ss_pred CcEEEEeC
Confidence 88888644
No 493
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=58.79 E-value=4.5 Score=33.30 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=14.8
Q ss_pred CcEEEECCCCCChhhHhH
Q 015454 71 RDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 71 ~~~il~~~tGsGKT~~~~ 88 (406)
..+.+.||+|||||..+-
T Consensus 10 ~~i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSR 27 (233)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999996554
No 494
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=58.77 E-value=16 Score=29.49 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=18.6
Q ss_pred cCCcEEEECCCCCChhhHhHHHHHhhh
Q 015454 69 KGRDVIAQAQSGTGKTSMIALTVCQTV 95 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~~i~~~~ 95 (406)
+|.-+++.|+.|+|||...-. +...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~-l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNV-VVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHH
Confidence 456688999999999966544 33444
No 495
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=58.74 E-value=7.3 Score=35.50 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=21.8
Q ss_pred cEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEc
Q 015454 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~ 108 (406)
.+++.+++|+|||..+.......... +.+++++.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~---G~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKR---GLKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHH---HCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 58899999999997665443333222 34566655
No 496
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=58.62 E-value=75 Score=27.78 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=14.7
Q ss_pred cEEEECCCCCChhhHhHH
Q 015454 72 DVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 72 ~~il~~~tGsGKT~~~~~ 89 (406)
.+.+.|++|+|||..+.-
T Consensus 81 ~I~i~G~~G~GKSTl~~~ 98 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEA 98 (355)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999965544
No 497
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=58.40 E-value=3.5 Score=41.08 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=16.1
Q ss_pred cCCcEEEECCCCCChhhHhH
Q 015454 69 KGRDVIAQAQSGTGKTSMIA 88 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~ 88 (406)
.+..+++.||+|+|||..+-
T Consensus 237 ~~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 35679999999999995443
No 498
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=58.40 E-value=5.2 Score=32.80 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=16.5
Q ss_pred cCCcEEEECCCCCChhhHhHH
Q 015454 69 KGRDVIAQAQSGTGKTSMIAL 89 (406)
Q Consensus 69 ~~~~~il~~~tGsGKT~~~~~ 89 (406)
.|.-+++.|+.|+|||...-.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~ 45 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINE 45 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHH
Confidence 456689999999999965443
No 499
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=58.31 E-value=33 Score=34.27 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=52.0
Q ss_pred HhhcCCcceEEEecchhhHHHHHHHHh----cCCceEEEeecCCCHHHHHHHHHHHhcCCCcEEEEcCc-c-----c---
Q 015454 267 YDTLTITQAVIFCNTKRKVDWLTEKMR----GYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-W-----A--- 333 (406)
Q Consensus 267 ~~~~~~~k~lif~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~-----~--- 333 (406)
+....+.+++|.++++.-|.+.++.+. ..|+.+..+.|+++..+|.... .++|+++|+. + .
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m 220 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNM 220 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTT
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhh
Confidence 333445689999999998876666654 4689999999999977665443 3689999963 2 1
Q ss_pred ----CCCCCCCCCEEEE
Q 015454 334 ----RGLDVQQVSLVIN 346 (406)
Q Consensus 334 ----~G~d~~~~~~vi~ 346 (406)
..+....+.++|.
T Consensus 221 ~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 221 AHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp CSSGGGCCCCCCCEEEE
T ss_pred hccHhhhccCCCCEEEE
Confidence 1355666777665
No 500
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=58.15 E-value=7.3 Score=36.59 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=29.6
Q ss_pred hhcCCcEEEECCCCCChhhHhHHHHHhhhccCCCceeEEEEcCcHHHHHHHHHHH
Q 015454 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (406)
Q Consensus 67 i~~~~~~il~~~tGsGKT~~~~~~i~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (406)
+..|.-+++.+|+|+|||......+.. ... .+.+++++++... ..+....+
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~-~~~--~G~~vi~~~~ee~-~~~l~~~~ 328 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVEN-ACA--NKERAILFAYEES-RAQLLRNA 328 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH-HHT--TTCCEEEEESSSC-HHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH-HHh--CCCCEEEEEEeCC-HHHHHHHH
Confidence 344667899999999999654433322 222 2445677766432 23444444
Done!