BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>015456
MAMSQMASTLASPLSFLLLRHSLSPYIPRQHSVSSPLSKHQHSHQILCAKKSSSSNNSKQ
QKPKAQTASSSLGPKAGVAIYKPKSYEVLAADAANSLAFALQDGKTRLEIDFPPLPSNIS
SYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGIT
IGSLDDVPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEKY
VVLFEEAYSPLCGKFLKTEKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFT
PVFYIRIREYSKTVPVAPFTINYSGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSE
TKEELLRVLGLQEEEGSSLQFLRRGYKNATWWEEDVDLELSSAWRS

High Scoring Gene Products

Symbol, full name Information P value
LPA3
AT1G73060 		protein from Arabidopsis thaliana 2.3e-131

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  015456
        (406 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2032662 - symbol:LPA3 "AT1G73060" species:3702...   669  2.3e-131  2


>TAIR|locus:2032662 [details] [associations]
            symbol:LPA3 "AT1G73060" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0009571 "proplastid stroma" evidence=IDA]
            [GO:0010207 "photosystem II assembly" evidence=IMP] [GO:0009073
            "aromatic amino acid family biosynthetic process" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0010207
            EMBL:BT002009 EMBL:BT008843 IPI:IPI00539608 RefSeq:NP_565054.1
            UniGene:At.11684 UniGene:At.67890 STRING:Q8H0W0 PaxDb:Q8H0W0
            PRIDE:Q8H0W0 ProMEX:Q8H0W0 EnsemblPlants:AT1G73060.1 GeneID:843637
            KEGG:ath:AT1G73060 TAIR:At1g73060 eggNOG:NOG329187
            HOGENOM:HOG000264419 InParanoid:Q8H0W0 OMA:PWQVMLK PhylomeDB:Q8H0W0
            ProtClustDB:CLSN2689174 ArrayExpress:Q8H0W0 Genevestigator:Q8H0W0
            GO:GO:0009571 InterPro:IPR018962 Pfam:PF09353 Uniprot:Q8H0W0
        Length = 358

 Score = 669 (240.6 bits), Expect = 2.3e-131, Sum P(2) = 2.3e-131
 Identities = 127/153 (83%), Positives = 139/153 (90%)

Query:   254 KFLKTEKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKT 313
             KF++T  FA STPALLFNLELDTLRADLG+LGFP KDLHYRFLSQF PVFYIR REYSKT
Sbjct:   208 KFVET--FASSTPALLFNLELDTLRADLGLLGFPPKDLHYRFLSQFIPVFYIRTREYSKT 265

Query:   314 VPVAPFTINYSGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSETKEELLRVLGLQE 373
             V VAPF +NY+GALFRQYPGPWQVMLKQ D S+ACVAES TRFTL ETKEELL+VLGLQE
Sbjct:   266 VAVAPFVLNYNGALFRQYPGPWQVMLKQTDGSFACVAESPTRFTLGETKEELLQVLGLQE 325

Query:   374 EEGSSLQFLRRGYKNATWWEEDVDLELSSAWRS 406
             E+GSSL+FLRRGYK+ATWWEEDV+LE SS WR+
Sbjct:   326 EKGSSLEFLRRGYKSATWWEEDVELEASSNWRN 358

 Score = 640 (230.4 bits), Expect = 2.3e-131, Sum P(2) = 2.3e-131
 Identities = 121/178 (67%), Positives = 143/178 (80%)

Query:    67 TASSSLGPKAGVAIYKPKSYEVXXXXXXXXXXXXXQDGKTRLEIDFPPLPSNISSYKGSS 126
             + SS+  P+ GV +YKPKSYEV             QD K+RLEIDFPPLPS+ISSYKGSS
Sbjct:    36 STSSNSDPRRGVPLYKPKSYEVLATDAANSLAFALQDSKSRLEIDFPPLPSSISSYKGSS 95

Query:   127 DEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGITIGSLDD 186
             D+FIDANIQLA+ VVRKLQE++ETRACIVFPDKPEK RAS+ FK A DS+DGI+IGSLDD
Sbjct:    96 DDFIDANIQLAVTVVRKLQEKIETRACIVFPDKPEKRRASQRFKAAFDSVDGISIGSLDD 155

Query:   187 VPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEKYVVLF 244
             +P  +V +FF SIR+TLDFDF+D+ EG W+  EPPTLY+FINCSTRELS IEK+V  F
Sbjct:   156 IPGTSVTNFFRSIRSTLDFDFEDENEGTWEPKEPPTLYIFINCSTRELSFIEKFVETF 213


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      406       378   0.00089  117 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  237 KB (2128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.78u 0.18s 28.96t   Elapsed:  00:00:01
  Total cpu time:  28.78u 0.18s 28.96t   Elapsed:  00:00:01
  Start:  Sat May 11 02:23:20 2013   End:  Sat May 11 02:23:21 2013

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