Query 015456
Match_columns 406
No_of_seqs 109 out of 174
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:29:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09353 DUF1995: Domain of un 100.0 1.3E-49 2.8E-54 372.7 23.0 206 82-362 1-208 (209)
2 PLN02842 nucleotide kinase 100.0 1.3E-49 2.9E-54 414.3 21.8 242 64-366 212-485 (505)
3 KOG0448 Mitofusin 1 GTPase, in 50.3 22 0.00049 40.0 4.7 45 219-279 231-276 (749)
4 cd02932 OYE_YqiM_FMN Old yello 35.4 1.7E+02 0.0037 29.5 8.2 62 87-152 150-222 (336)
5 PF12362 DUF3646: DNA polymera 35.3 2.7E+02 0.0059 24.5 8.3 71 82-161 2-77 (117)
6 PF13466 STAS_2: STAS domain 32.7 2.3E+02 0.005 21.8 8.1 64 89-165 11-74 (80)
7 PF05722 Ustilago_mating: Usti 23.7 74 0.0016 31.1 3.0 93 6-100 150-242 (286)
8 cd04735 OYE_like_4_FMN Old yel 23.6 3.4E+02 0.0074 27.7 8.0 58 87-149 140-209 (353)
9 cd02930 DCR_FMN 2,4-dienoyl-Co 23.4 3.7E+02 0.008 27.4 8.2 64 86-154 132-207 (353)
10 cd02803 OYE_like_FMN_family Ol 23.1 3.8E+02 0.0083 26.5 8.1 63 86-152 136-209 (327)
No 1
>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised.
Probab=100.00 E-value=1.3e-49 Score=372.72 Aligned_cols=206 Identities=39% Similarity=0.617 Sum_probs=176.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCce--EEEEcCCCCCCCCCCCCCchHHHHhhHHHHHHHHHHHHHhcCCceEEEccCh
Q 015456 82 KPKSYEVLAADAANSLAFALQDGKTR--LEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDK 159 (406)
Q Consensus 82 lP~s~~eav~qA~~Av~~AL~dG~~R--leVEFP~L~~~~d~~~g~~d~~~~~n~~La~~fa~~l~~~~G~rvrV~fPDa 159 (406)
||.|++|++.||++|+++||++|.+| +|++||+|.. .+++++++|++.| .+.|++++++|||+
T Consensus 1 lP~s~~ea~~qA~~Av~~Al~~g~~r~~ve~~fP~l~~--------------~~~~la~~~~~~l-~~~~~~~~~~~pd~ 65 (209)
T PF09353_consen 1 LPSSLEEAVEQAAEAVQAALEDGDSRQLVELEFPGLNP--------------SNMPLAREFARKL-AASGRRVRVVFPDA 65 (209)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEECCCcch--------------hHHHHHHHHHHHH-HhcCceEEEEcCCh
Confidence 79999999999999999999999988 5555998831 4589999999999 55789999999999
Q ss_pred hhHHHHHHHhhhcccCCCCeeeeeccCCCCCccccccccccccCCCCCcccccccCCCCCCCcEEEEEeccCCChHHHHH
Q 015456 160 PEKGRASRLFKRALDSIDGITIGSLDDVPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEK 239 (406)
Q Consensus 160 geaalAkr~w~~~~~~~~Gv~i~sLd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~VvV~Ps~~el~~vE~ 239 (406)
|++++|+++|++.. +++.+|+++... ... ...++++|||+|++.+++++|+
T Consensus 66 g~~alA~~~~~~~~-----~~~~~l~~~~~~---------------------~~~---~~~~~~~vvv~p~~~~l~~~e~ 116 (209)
T PF09353_consen 66 GEAALARRDWGDGS-----FKIASLDDWSSS---------------------EDE---SKFDDILVVVAPSPQELDDVEK 116 (209)
T ss_pred HHHHHHhccccCCC-----eEEeeccCcccc---------------------ccc---cccCCEEEEEECChhhHHHHHH
Confidence 99999999996664 456677664420 000 0115999999999999999999
Q ss_pred HHHHhhhhcCcccccchhhhhccCCccEEEEcCcchhhccccCCCCCchHHHHHHhhcCcceeEEeEeeccCCCcCCCCc
Q 015456 240 YVVLFEEAYSPLCGKFLKTEKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPF 319 (406)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~a~~rPvVllNp~Ld~lr~D~gviGf~~R~lr~~FLstFe~vYyLr~l~y~~t~~~~Pf 319 (406)
|| +..++||||||||+|++++++. ||+++|++|++|+++|++||||||+.|++
T Consensus 117 ~~------------------~~~~~rpvvl~Np~l~~~~~~g--~g~~~r~~~~~Fl~~fe~vY~l~~l~~~~------- 169 (209)
T PF09353_consen 117 LC------------------EAAGGRPVVLLNPQLEDVRSVG--FGFPGRKLRERFLSSFETVYYLRPLRISG------- 169 (209)
T ss_pred HH------------------HhcCCCeEEEEecccccCCccc--cccccHHHHHHHHhhceEEEEEEeeccCC-------
Confidence 99 4455699999999999776554 99999999999999999999999998765
Q ss_pred ccccceEEEeEeCCCcEEEEEccCCceEEeeecccCCCchHHH
Q 015456 320 TINYSGALFRQYPGPWQVMLKQADSSYACVAESETRFTLSETK 362 (406)
Q Consensus 320 i~n~~GaLfR~YPgpWQV~~~~~~g~Y~~Vae~~~RPs~~E~~ 362 (406)
.|+||||||||||||+++++|+|+||+++++|||++|+.
T Consensus 170 ----~gal~r~yP~~Wqv~~~~~~~~y~~v~~~~~rP~~~e~~ 208 (209)
T PF09353_consen 170 ----NGALFRCYPGPWQVFREDDDGEYECVAEFEERPTYEELE 208 (209)
T ss_pred ----cEEEEEeCCCCcEEEEEcCCCcEEEEEecccCCChHHhh
Confidence 599999999999999999889999999999999888764
No 2
>PLN02842 nucleotide kinase
Probab=100.00 E-value=1.3e-49 Score=414.33 Aligned_cols=242 Identities=17% Similarity=0.252 Sum_probs=207.3
Q ss_pred hhhhccccCCCCCCcCC---CCCCCHHH---HHHHHHHHHHHHHHcCCceEEEE--cCCCCCCCCCCCCCchHHHHhhHH
Q 015456 64 KAQTASSSLGPKAGVAI---YKPKSYEV---LAADAANSLAFALQDGKTRLEID--FPPLPSNISSYKGSSDEFIDANIQ 135 (406)
Q Consensus 64 ~~~~a~~~~~~~~g~~~---~lP~s~~e---av~qA~~Av~~AL~dG~~RleVE--FP~L~~~~d~~~g~~d~~~~~n~~ 135 (406)
|+.+|++.++.+.|.++ ..|++.+. .+++|.+||++|++||++|++|| ||+|++++|+|+.|+ + ++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~g~~r~~~~~~~pel~~~~~~~~~~~-----~-~~ 285 (505)
T PLN02842 212 KTKKASPVQDKWRGIPTRLNNIPHSREIRAYFYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGT-----L-ME 285 (505)
T ss_pred ccccccchhhhhccCchhhcCCCChHHHHHHHHHHHHHHHHHHHhCCcceEEEEEecCccccccccccchh-----H-HH
Confidence 44578889999999887 46999997 99999999999999999999997 999999999999998 5 89
Q ss_pred HHHHHHHHHHHhcCCceEEEccC-hhhHHH--------------HHHHhhhcccCCCCeeeeeccCCCCCcccccccccc
Q 015456 136 LALAVVRKLQERMETRACIVFPD-KPEKGR--------------ASRLFKRALDSIDGITIGSLDDVPTGAVRSFFSSIR 200 (406)
Q Consensus 136 La~~fa~~l~~~~G~rvrV~fPD-ageaal--------------Akr~w~~~~~~~~Gv~i~sLd~~~~~~~~~~~~~~~ 200 (406)
||++|+..| ++.|++||||||| +|++++ |+++|++.++.=+=|+++.+
T Consensus 286 l~~~~~~~~-~~~~~~~kv~~~~~~g~~~~~~~~~~~~~~~~~~~~~dw~~~~~~~~~~~~~~~---------------- 348 (505)
T PLN02842 286 LVRVLALSF-ADDGKRVKVCVQGSMGEGALAGMPLQLAGTRKILEFMDWGDYGAKGTFVKIGAI---------------- 348 (505)
T ss_pred HHHHHHHHH-hhcCCceEEEecCCcchhHhccCccccccchhhhhhcccccccccccceeeccc----------------
Confidence 999999999 8999999999999 899999 77777776542111122221
Q ss_pred ccCCCCCcccccccCCCCCCCcEEEEEeccC-C---ChHHHHHHHHHhhhhcCcccccchhhhhccCCccEEEEcCcchh
Q 015456 201 NTLDFDFDDQEEGRWQSDEPPTLYVFINCST-R---ELSVIEKYVVLFEEAYSPLCGKFLKTEKFAMSTPALLFNLELDT 276 (406)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~d~~VvV~Ps~-~---el~~vE~l~~~~~~~~~~~~~~~~~~~~~a~~rPvVllNp~Ld~ 276 (406)
.+..++ ++|++||+|+|++ + ++++||+|| +.+++|||||+||+|++
T Consensus 349 ----------~~~~~~--~~d~~~i~v~P~~~v~~~~~~~~e~~~------------------~~~~~rpvillnp~LeD 398 (505)
T PLN02842 349 ----------GAKEVD--EEDDMFILVAPQNAVGNCIIDDLQAMT------------------TAAGKRPVILVNPRLKD 398 (505)
T ss_pred ----------ccCCCC--CCCcEEEEEcCCccccccchHHHHHHH------------------HHhCCCeEEEECCcccc
Confidence 112334 7789999999999 4 999999999 78899999999999998
Q ss_pred hccccCCCC-CchHHHHHHhhcCcceeEEeEeeccCCCcCCCCcccccceEEEeEeCCCcEEEEEcc----CCceEEeee
Q 015456 277 LRADLGILG-FPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINYSGALFRQYPGPWQVMLKQA----DSSYACVAE 351 (406)
Q Consensus 277 lr~D~gviG-f~~R~lr~~FLstFe~vYyLr~l~y~~t~~~~Pfi~n~~GaLfR~YPgpWQV~~~~~----~g~Y~~Vae 351 (406)
+.+..| || +++|++|++|+++|++|||||||++.+|++ +++|||+|+||++||||++++ +++|+++++
T Consensus 399 ~~~~vG-ig~~~~R~~R~~f~~t~~~~Y~~~~l~~~~~~~------~~~gal~~~yp~~w~l~~~~~~~~~~~~y~~~~~ 471 (505)
T PLN02842 399 LPGSSG-IMQTMGREQRLEYAASFENCYSFRLLYYAGTQY------PIMGALRMSYPYRYELYKRVDEENGKEKYIILAT 471 (505)
T ss_pred cccccc-hhHHHHHHHHHHHHHHhhheeEEEecccccccc------ccceeeeecCCCCeeEEEecCccccCcceEEeee
Confidence 777777 67 999999999999999999999999777654 579999999999999998752 458999999
Q ss_pred cccCCCchHHHHHHH
Q 015456 352 SETRFTLSETKEELL 366 (406)
Q Consensus 352 ~~~RPs~~E~~~~Ll 366 (406)
+++|| .+|.++.+|
T Consensus 472 ~~~~P-~~e~i~~~~ 485 (505)
T PLN02842 472 FSERP-TPDEINDAF 485 (505)
T ss_pred cCCCC-CHHHHHHHh
Confidence 99999 778788777
No 3
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=50.26 E-value=22 Score=40.01 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=28.5
Q ss_pred CCCcEEEEEeccCCChHHHHHHHHHhhhhcCcccccchhhhhccCCcc-EEEEcCcchhhcc
Q 015456 219 EPPTLYVFINCSTRELSVIEKYVVLFEEAYSPLCGKFLKTEKFAMSTP-ALLFNLELDTLRA 279 (406)
Q Consensus 219 ~~~d~~VvV~Ps~~el~~vE~l~~~~~~~~~~~~~~~~~~~~~a~~rP-vVllNp~Ld~lr~ 279 (406)
.+.|+||+|...-+++..-|+=. +. .+...+| |-++|.+||..++
T Consensus 231 ldaDVfVlV~NaEntlt~sek~F-------------f~---~vs~~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 231 LDADVFVLVVNAENTLTLSEKQF-------------FH---KVSEEKPNIFILNNKWDASAS 276 (749)
T ss_pred hcCCeEEEEecCccHhHHHHHHH-------------HH---HhhccCCcEEEEechhhhhcc
Confidence 56689999988756555544422 11 2233377 7789999996444
No 4
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=35.43 E-value=1.7e+02 Score=29.50 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHhhHHHHHHHHHHHHHhcCCce
Q 015456 87 EVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRA 152 (406)
Q Consensus 87 ~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~~d~~~g~~d~~~~~n~~La~~fa~~l~~~~G~rv 152 (406)
++.+++-.+|++.|.+.|..-+||.. |..+.--|.|-|+- +-.+++++++++.+.+..|...
T Consensus 150 ~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl----~nr~rf~~eiv~aIR~~vG~d~ 222 (336)
T cd02932 150 AEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSL----ENRMRFLLEVVDAVRAVWPEDK 222 (336)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCH----HHHhHHHHHHHHHHHHHcCCCc
Confidence 45888999999999999999999985 66665666774443 2337889999999866666543
No 5
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=35.31 E-value=2.7e+02 Score=24.47 Aligned_cols=71 Identities=25% Similarity=0.292 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHH----HHHHHHHcCCceEEEEcCCCCCCCCCCCCCchHHHHhhHHHHHHHHHHHHHhcCCceEEEcc
Q 015456 82 KPKSYEVLAADAAN----SLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFP 157 (406)
Q Consensus 82 lP~s~~eav~qA~~----Av~~AL~dG~~RleVEFP~L~~~~d~~~g~~d~~~~~n~~La~~fa~~l~~~~G~rvrV~fP 157 (406)
-|.||+++++-+.. -+...|.+..+++..+=+-| ++.--++. --.|+.++.+.|...+|.|-.|-+.
T Consensus 2 ~~~sf~~lv~l~~~~rd~~L~~~le~~vrLV~f~pGri--e~~~~~~a-------p~dl~~~L~~~L~~wTG~rW~V~~s 72 (117)
T PF12362_consen 2 RPASFEDLVALAREKRDIKLKVELERYVRLVRFEPGRI--EFRPTPGA-------PKDLAQRLSRKLQEWTGQRWIVSLS 72 (117)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHHHHhCeeEEEecCCEE--EEEeCCCC-------CHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 37899987776543 35566888776655441111 11111111 1467999999999999999888766
Q ss_pred Ch-hh
Q 015456 158 DK-PE 161 (406)
Q Consensus 158 Da-ge 161 (406)
+. |+
T Consensus 73 ~~~g~ 77 (117)
T PF12362_consen 73 NEPGE 77 (117)
T ss_pred CCCCC
Confidence 65 44
No 6
>PF13466 STAS_2: STAS domain
Probab=32.72 E-value=2.3e+02 Score=21.78 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEcCCCCCCCCCCCCCchHHHHhhHHHHHHHHHHHHHhcCCceEEEccChhhHHHH
Q 015456 89 LAADAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRA 165 (406)
Q Consensus 89 av~qA~~Av~~AL~dG~~RleVEFP~L~~~~d~~~g~~d~~~~~n~~La~~fa~~l~~~~G~rvrV~fPDageaalA 165 (406)
.+.+..++...++++| ..+.|+|-.+. .+|+ +-+++-..+.+.. ...|.++.+.-+.+.-..+.
T Consensus 11 ~~~~l~~~l~~~~~~~-~~v~lDls~v~-~iDs----------agl~lL~~~~~~~-~~~g~~~~l~~~~~~~~~ll 74 (80)
T PF13466_consen 11 TAPELRQALQALLASG-RPVVLDLSGVE-FIDS----------AGLQLLLAAARRA-RARGRQLRLTGPSPALRRLL 74 (80)
T ss_pred HHHHHHHHHHHHHcCC-CeEEEECCCCC-eecH----------HHHHHHHHHHHHH-HHCCCeEEEEcCCHHHHHHH
Confidence 4567778888888888 99999999885 3332 2266666666666 55788888877766544443
No 7
>PF05722 Ustilago_mating: Ustilago B locus mating-type protein; InterPro: IPR008888 This domain consists of several Ustilago mating-type proteins. The b locus of the phytopathogenic fungus Ustilago maydis encodes a multiallelic recognition function that controls the ability of the fungus to form a dikaryon and complete the sexual stage of the life cycle. The b locus has at least 25 alleles and any combination of two different alleles, brought together by mating between haploid cells, allows the fungus to cause disease and undergo sexual development within the plant [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=23.71 E-value=74 Score=31.08 Aligned_cols=93 Identities=18% Similarity=0.084 Sum_probs=47.8
Q ss_pred hhHhhhchhHHhhhhccCCCccccccccCCCCccccccchheeccccccCCCccccCchhhhccccCCCCCCcCCCCCCC
Q 015456 6 MASTLASPLSFLLLRHSLSPYIPRQHSVSSPLSKHQHSHQILCAKKSSSSNNSKQQKPKAQTASSSLGPKAGVAIYKPKS 85 (406)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~~lP~s 85 (406)
|.||.-.-++-+-.-.|++-|-||||- ----|-.-|-+-.--+|+- -+-..|||-..+-+-+.+-...-|...+.|.+
T Consensus 150 ~cstadtsfssf~sn~sm~q~dpfq~~-dl~qsptl~arg~rkvkal-pkra~qq~p~e~~~~~n~esg~~~tc~pvpe~ 227 (286)
T PF05722_consen 150 MCSTADTSFSSFCSNLSMMQYDPFQQY-DLLQSPTLNARGNRKVKAL-PKRAAQQQPSEALYINNNESGSIDTCYPVPEE 227 (286)
T ss_pred hhcccccchhhhcccccccccCccchh-hhhhCCccccccCchhhhc-chhhhhcCCchhccccccccccccccccChhh
Confidence 455555555555556678888899882 1111111122211122221 13334433322233344444455666788999
Q ss_pred HHHHHHHHHHHHHHH
Q 015456 86 YEVLAADAANSLAFA 100 (406)
Q Consensus 86 ~~eav~qA~~Av~~A 100 (406)
+..+..-+.+|...|
T Consensus 228 ~k~~~sl~s~a~aqa 242 (286)
T PF05722_consen 228 RKTASSLASEAHAQA 242 (286)
T ss_pred hccchhhhHHHHHHh
Confidence 988877666666544
No 8
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.63 E-value=3.4e+02 Score=27.72 Aligned_cols=58 Identities=26% Similarity=0.352 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHhh-HHHHHHHHHHHHHhcC
Q 015456 87 EVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERME 149 (406)
Q Consensus 87 ~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~~d~~~g~~d~~~~~n-~~La~~fa~~l~~~~G 149 (406)
++.+++-.+|++.|.+.|-.-+||.. |-.|-=-|.|-|+. .| +.+++++++.+.+..|
T Consensus 140 ~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGsl-----enR~r~~~eii~~vr~~vg 209 (353)
T cd04735 140 EDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSL-----ENRMRFPLAVVKAVQEVID 209 (353)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcH-----HHHHHHHHHHHHHHHHHhc
Confidence 45888999999999999999999985 66664456676664 24 7889999998866555
No 9
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=23.39 E-value=3.7e+02 Score=27.37 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHhh-HHHHHHHHHHHHHhcCCceE
Q 015456 86 YEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMETRAC 153 (406)
Q Consensus 86 ~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~~d~~~g~~d~~~~~n-~~La~~fa~~l~~~~G~rvr 153 (406)
.++.+++-.+|++.|.+.|-.=+||-. |-.+---|.|-|+- .| +.+++++++.+.+..|..+.
T Consensus 132 I~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGsl-----enR~r~~~eiv~aIR~~vG~d~~ 206 (353)
T cd02930 132 IEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSF-----ENRMRFPVEIVRAVRAAVGEDFI 206 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCH-----HHHhHHHHHHHHHHHHHcCCCce
Confidence 445888999999999999999999974 44444455675543 33 78888999988666676543
Q ss_pred E
Q 015456 154 I 154 (406)
Q Consensus 154 V 154 (406)
|
T Consensus 207 v 207 (353)
T cd02930 207 I 207 (353)
T ss_pred E
Confidence 3
No 10
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.15 E-value=3.8e+02 Score=26.48 Aligned_cols=63 Identities=22% Similarity=0.251 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHhhHHHHHHHHHHHHHhcCCce
Q 015456 86 YEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRA 152 (406)
Q Consensus 86 ~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~~d~~~g~~d~~~~~n~~La~~fa~~l~~~~G~rv 152 (406)
.++.+++-.+|++.|.+.|..-+||.. |..+.--|.|-|+- +-..++.+++++.+.+..|..+
T Consensus 136 i~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~----enr~r~~~eii~avr~~~g~d~ 209 (327)
T cd02803 136 IEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSL----ENRARFLLEIVAAVREAVGPDF 209 (327)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCH----HHHHHHHHHHHHHHHHHcCCCc
Confidence 445888999999999999999999983 33344445565543 2226778888888866565443
Done!