Query 015456
Match_columns 406
No_of_seqs 109 out of 174
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 12:56:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015456.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015456hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rp4_A Transcription factor P5 30.6 23 0.00078 27.9 1.9 24 331-355 8-31 (76)
2 2hsa_B 12-oxophytodienoate red 30.5 1.2E+02 0.004 30.3 7.7 61 84-149 164-236 (402)
3 1icp_A OPR1, 12-oxophytodienoa 29.5 1.5E+02 0.0053 29.1 8.3 62 84-149 160-232 (376)
4 3kru_A NADH:flavin oxidoreduct 24.9 1.7E+02 0.006 28.4 7.6 60 87-151 139-210 (343)
5 3hgj_A Chromate reductase; TIM 23.0 3.9E+02 0.013 25.7 9.8 60 87-150 148-218 (349)
6 2r14_A Morphinone reductase; H 22.1 2E+02 0.0067 28.4 7.4 62 85-150 160-232 (377)
7 3l5l_A Xenobiotic reductase A; 21.3 2.5E+02 0.0085 27.3 8.0 59 87-150 154-224 (363)
8 1z41_A YQJM, probable NADH-dep 20.2 4.1E+02 0.014 25.3 9.2 60 86-149 139-209 (338)
9 1vyr_A Pentaerythritol tetrani 20.1 2.2E+02 0.0075 27.8 7.3 63 84-150 154-227 (364)
10 2l82_A Designed protein OR32; 19.3 1.7E+02 0.0059 24.9 5.4 104 135-276 13-116 (162)
No 1
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=30.61 E-value=23 Score=27.89 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=20.3
Q ss_pred eCCCcEEEEEccCCceEEeeecccC
Q 015456 331 YPGPWQVMLKQADSSYACVAESETR 355 (406)
Q Consensus 331 YPgpWQV~~~~~~g~Y~~Vae~~~R 355 (406)
-|..|||=+-. +|.|+++-+.+.+
T Consensus 8 ~p~dW~VsRt~-dGdYrL~itcpkK 31 (76)
T 2rp4_A 8 SAAEWNVSRTP-DGDYRLAITCPNK 31 (76)
T ss_dssp SSCCCEEECCT-TTBEEEEEEESCH
T ss_pred CCccceeeecc-CCceEEEEEeCcH
Confidence 48999999877 9999999887654
No 2
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Probab=30.54 E-value=1.2e+02 Score=30.29 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHhh-HHHHHHHHHHHHHhcC
Q 015456 84 KSYEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERME 149 (406)
Q Consensus 84 ~s~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~~d~~~g~~d~~~~~n-~~La~~fa~~l~~~~G 149 (406)
.+.++.+++-.+|++.|.+.|..-+||.. |..+---|.|-|+. .| +++++++++.+.+..|
T Consensus 164 ~eI~~ii~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGsl-----enR~rf~~Eiv~aVr~avg 236 (402)
T 2hsa_B 164 YEISQVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSL-----ANRCKFITQVVQAVVSAIG 236 (402)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSH-----HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcCh-----hhhhHHHHHHHHHHHHHhC
Confidence 35667888999999999999999999995 77765566775553 23 7788888888855555
No 3
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=29.50 E-value=1.5e+02 Score=29.08 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHhhHHHHHHHHHHHHHhcC
Q 015456 84 KSYEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERME 149 (406)
Q Consensus 84 ~s~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~~d~~~g~~d~~~~~n~~La~~fa~~l~~~~G 149 (406)
.+.++.+++-.+|++.|.+.|..-+||.. |..+.--|.|-|+. +-..++++++++.+.+..|
T Consensus 160 ~eI~~~i~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGsl----enR~r~~~eiv~aVr~avg 232 (376)
T 1icp_A 160 DEIPQIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSL----ENRCRFALEIVEAVANEIG 232 (376)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSH----HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccH----HHhHHHHHHHHHHHHHHhc
Confidence 46677888999999999999999999984 66664456675553 1226788888888855555
No 4
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=24.90 E-value=1.7e+02 Score=28.42 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEE---------c--CCCCCCCCCCCCCchHHHHhh-HHHHHHHHHHHHHhcCCc
Q 015456 87 EVLAADAANSLAFALQDGKTRLEID---------F--PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMETR 151 (406)
Q Consensus 87 ~eav~qA~~Av~~AL~dG~~RleVE---------F--P~L~~~~d~~~g~~d~~~~~n-~~La~~fa~~l~~~~G~r 151 (406)
++.+++=.+|++.|.+.|-.-+||. | |..+---|.|-|+- .| .++++++++.+.+..|..
T Consensus 139 ~~ii~~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGsl-----enR~rf~~eiv~aVr~avg~d 210 (343)
T 3kru_A 139 KSIVKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSI-----ENRARFLIEVIDEVRKNWPEN 210 (343)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSH-----HHHTHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccch-----HhHHHHHHHHHHHHHhcCCcc
Confidence 3478888999999999999999999 3 65554456676653 23 678899999986666643
No 5
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=23.05 E-value=3.9e+02 Score=25.65 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHhhHHHHHHHHHHHHHhcCC
Q 015456 87 EVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMET 150 (406)
Q Consensus 87 ~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~~d~~~g~~d~~~~~n~~La~~fa~~l~~~~G~ 150 (406)
++.+++=.+|++.|.+.|-.-+||.. |..+.--|.|-|+.+ -.+++++++++.+.+..|.
T Consensus 148 ~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGsle----nR~r~~~eiv~aVR~avG~ 218 (349)
T 3hgj_A 148 ERILQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLE----NRMRFPLQVAQAVREVVPR 218 (349)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHH----HHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHH----HHHHHHHHHHHHHHHHhcC
Confidence 34788999999999999999999983 666655567766532 2267888898888666664
No 6
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=22.06 E-value=2e+02 Score=28.38 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHhhHHHHHHHHHHHHHhcCC
Q 015456 85 SYEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMET 150 (406)
Q Consensus 85 s~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~~d~~~g~~d~~~~~n~~La~~fa~~l~~~~G~ 150 (406)
+.++.+++-.+|++.|.+.|..-+||.. |..+.--|.|-|+- +-..++++++++.+.+..|.
T Consensus 160 eI~~~i~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGsl----enR~r~~~eiv~aVr~avg~ 232 (377)
T 2r14_A 160 EIPGIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSI----ENRARFPLEVVDAVAEVFGP 232 (377)
T ss_dssp GHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSH----HHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcch----hhchHHHHHHHHHHHHHcCC
Confidence 4556888889999999999999999984 66664556675543 12267888888888555553
No 7
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=21.33 E-value=2.5e+02 Score=27.28 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHhh-HHHHHHHHHHHHHhcCC
Q 015456 87 EVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMET 150 (406)
Q Consensus 87 ~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~~d~~~g~~d~~~~~n-~~La~~fa~~l~~~~G~ 150 (406)
++.+++=.+|++.|.+.|-.-+||.. |..+---|.|-|+- .| +++++++++.+.+..|.
T Consensus 154 ~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGsl-----enR~r~~~eiv~aVr~avg~ 224 (363)
T 3l5l_A 154 ARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSF-----DNRSRFLLETLAAVREVWPE 224 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSH-----HHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCH-----HHHHHHHHHHHHHHHHHcCC
Confidence 34788999999999999999999983 55554456676654 34 67888999988655553
No 8
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=20.23 E-value=4.1e+02 Score=25.31 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHhhHHHHHHHHHHHHHhcC
Q 015456 86 YEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERME 149 (406)
Q Consensus 86 ~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~~d~~~g~~d~~~~~n~~La~~fa~~l~~~~G 149 (406)
.++.+++-.+|++.|.+.|..-+||.. |..+.--|.|-|+- +-..++++++++.+.+...
T Consensus 139 I~~~i~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGsl----enr~r~~~eiv~avr~~v~ 209 (338)
T 1z41_A 139 VKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSP----ENRYRFLREIIDEVKQVWD 209 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSH----HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcch----hhhHHHHHHHHHHHHHHcC
Confidence 345788889999999999999999994 66654456665543 1226788888888854433
No 9
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=20.14 E-value=2.2e+02 Score=27.80 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHhhHHHHHHHHHHHHHhcCC
Q 015456 84 KSYEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMET 150 (406)
Q Consensus 84 ~s~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~~d~~~g~~d~~~~~n~~La~~fa~~l~~~~G~ 150 (406)
....+.+++-.+|++.|.+.|..-+||.. |..+.--|.|-|+. +-..++++++++.+.+..|.
T Consensus 154 ~eI~~~i~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGsl----enr~r~~~eiv~avr~~vg~ 227 (364)
T 1vyr_A 154 DEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSV----ENRARLVLEVVDAVCNEWSA 227 (364)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSH----HHHTHHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcch----hcChhhHHHHHHHHHHhcCC
Confidence 35566888889999999999999999963 66654456675553 12267888888888655553
No 10
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=19.30 E-value=1.7e+02 Score=24.90 Aligned_cols=104 Identities=18% Similarity=0.351 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCCceEEEccChhhHHHHHHHhhhcccCCCCeeeeeccCCCCCccccccccccccCCCCCccccccc
Q 015456 135 QLALAVVRKLQERMETRACIVFPDKPEKGRASRLFKRALDSIDGITIGSLDDVPTGAVRSFFSSIRNTLDFDFDDQEEGR 214 (406)
Q Consensus 135 ~La~~fa~~l~~~~G~rvrV~fPDageaalAkr~w~~~~~~~~Gv~i~sLd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (406)
++..++.+.+ ++.|-++-+++.|..+...-.+. ..+...||.+-++.+.. + |...+..-
T Consensus 13 eilkeivrei-krqgvrvvllysdqdekrrrerl---eefekqgvdvrtvedke--d---------------frenirei 71 (162)
T 2l82_A 13 EILKEIVREI-KRQGVRVVLLYSDQDEKRRRERL---EEFEKQGVDVRTVEDKE--D---------------FRENIREI 71 (162)
T ss_dssp HHHHHHHHHH-HHTTCEEEEEECCSCHHHHHHHH---HHHHTTTCEEEECCSHH--H---------------HHHHHHHH
T ss_pred HHHHHHHHHH-HhCCeEEEEEecCchHHHHHHHH---HHHHHcCCceeeeccHH--H---------------HHHHHHHH
Confidence 5667778888 78899999999999888655442 11233466666654311 1 11111111
Q ss_pred CCCCCCCcEEEEEeccCCChHHHHHHHHHhhhhcCcccccchhhhhccCCccEEEEcCcchh
Q 015456 215 WQSDEPPTLYVFINCSTRELSVIEKYVVLFEEAYSPLCGKFLKTEKFAMSTPALLFNLELDT 276 (406)
Q Consensus 215 ~~~~~~~d~~VvV~Ps~~el~~vE~l~~~~~~~~~~~~~~~~~~~~~a~~rPvVllNp~Ld~ 276 (406)
|.--+.-|+.|+|.-. +-+-+..+. ++++..+-...|+.|.+=++
T Consensus 72 werypqldvvvivttd--dkewikdfi---------------eeakergvevfvvynnkddd 116 (162)
T 2l82_A 72 WERYPQLDVVVIVTTD--DKEWIKDFI---------------EEAKERGVEVFVVYNNKDDD 116 (162)
T ss_dssp HHHCTTCCEEEEEECC--CHHHHHHHH---------------HHHHHTTCEEEEEEECSCHH
T ss_pred HHhCCCCcEEEEEecC--cHHHHHHHH---------------HHHHhcCcEEEEEecCCCch
Confidence 2111344677777664 333444444 22344455678889988774
Done!