Query 015456
Match_columns 406
No_of_seqs 109 out of 174
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 12:56:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015456.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015456hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w25a3 d.58.29.2 (A:294-455) 19.5 44 0.0032 25.6 3.9 25 84-108 132-156 (162)
2 d1vhua_ c.50.1.2 (A:) Hypothet 18.1 1.4E+02 0.01 24.0 7.1 74 90-171 116-190 (192)
3 d1djqa1 c.1.4.1 (A:1-340) Trim 17.5 1.8E+02 0.013 25.5 8.3 61 86-151 144-216 (340)
4 d1z1ba1 d.10.1.4 (A:11-59) lam 14.3 31 0.0023 23.4 1.4 27 73-99 18-44 (49)
5 d1wxaa1 d.15.1.5 (A:8-110) Afa 13.3 82 0.006 23.2 3.8 43 325-373 2-44 (103)
6 d1icpa_ c.1.4.1 (A:) 12-oxophy 12.8 3.6E+02 0.026 23.8 9.0 62 84-150 151-224 (364)
7 d1z41a1 c.1.4.1 (A:2-338) NADP 12.2 4.1E+02 0.03 23.1 9.2 62 86-152 138-211 (337)
8 d1ps9a1 c.1.4.1 (A:1-330) 2,4- 11.9 3.9E+02 0.029 23.1 8.9 62 86-152 136-209 (330)
9 d2zdpa1 d.58.4.5 (A:0-108) Hyp 11.8 14 0.001 28.5 -1.3 57 346-405 3-68 (109)
10 d1q45a_ c.1.4.1 (A:) 12-oxophy 11.8 2.8E+02 0.021 24.5 8.0 61 85-150 153-225 (380)
No 1
>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]}
Probab=19.47 E-value=44 Score=25.56 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceE
Q 015456 84 KSYEVLAADAANSLAFALQDGKTRL 108 (406)
Q Consensus 84 ~s~~eav~qA~~Av~~AL~dG~~Rl 108 (406)
.+.++++.+|-.|+..|-+.|++|+
T Consensus 132 ~~~~~ll~~A~~AL~~AK~~G~n~v 156 (162)
T d1w25a3 132 DTPEALLKRADEGVYQAKASGRNAV 156 (162)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeE
Confidence 6799999999999999999999886
No 2
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=18.08 E-value=1.4e+02 Score=23.97 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=39.8
Q ss_pred HHHH-HHHHHHHHHcCCceEEEEcCCCCCCCCCCCCCchHHHHhhHHHHHHHHHHHHHhcCCceEEEccChhhHHHHHHH
Q 015456 90 AADA-ANSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGRASRL 168 (406)
Q Consensus 90 v~qA-~~Av~~AL~dG~~RleVEFP~L~~~~d~~~g~~d~~~~~n~~La~~fa~~l~~~~G~rvrV~fPDageaalAkr~ 168 (406)
+.+| ..+++.|.+.|.+ .|=||.+.++.-.++- +. . .+.+++-++.|....-++|+++.-|...+..-++.
T Consensus 116 L~~~~~~~L~~A~~~~~~--SIA~P~lgtG~~g~p~--~~---~-a~~~~~ai~~f~~~~l~~V~~v~~~~~~~~~~~~~ 187 (192)
T d1vhua_ 116 LYKAFLGPLEKAEEMGVE--SIAFPAVSAGIYGCDL--EK---V-VETFLEAVKNFKGSAVKEVALVIYDRKSAEVALKV 187 (192)
T ss_dssp HHHHHHHHHHHHHHHTCC--EEEECCTTSSTTCCCH--HH---H-HHHHHHHHHHCCCSSCCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCc--EEEecCccCCCCCCCH--HH---H-HHHHHHHHHHhccCCcCEEEEEECCHHHHHHHHHH
Confidence 3444 3344555555654 6779999755432222 11 1 22233333334222336888888888777777766
Q ss_pred hhh
Q 015456 169 FKR 171 (406)
Q Consensus 169 w~~ 171 (406)
|+.
T Consensus 188 ~~~ 190 (192)
T d1vhua_ 188 FER 190 (192)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 3
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Probab=17.52 E-value=1.8e+02 Score=25.49 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHhh-HHHHHHHHHHHHHhcCCc
Q 015456 86 YEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMETR 151 (406)
Q Consensus 86 ~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~~d~~~g~~d~~~~~n-~~La~~fa~~l~~~~G~r 151 (406)
.++.+++-.+|++.|.+.|-.=+||-. |-.|---|.|-|+. -| +.+.+++++.+.+..|..
T Consensus 144 I~~ii~~f~~aA~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~-----enR~Rf~~EIi~aIr~~vg~~ 216 (340)
T d1djqa1 144 IAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSL-----ENRARFWLETLEKVKHAVGSD 216 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSH-----HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhccceeeeeccccchhhhhhhhccccccccccccH-----HhhhHHHHHHHHHHHHHHhhh
Confidence 344888999999999999999999982 56665567785443 35 788999999886666654
No 4
>d1z1ba1 d.10.1.4 (A:11-59) lambda integrase N-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=14.35 E-value=31 Score=23.42 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=21.6
Q ss_pred CCCCCcCCCCCCCHHHHHHHHHHHHHH
Q 015456 73 GPKAGVAIYKPKSYEVLAADAANSLAF 99 (406)
Q Consensus 73 ~~~~g~~~~lP~s~~eav~qA~~Av~~ 99 (406)
+|..|.-..|=.|..+|+.||.+|=..
T Consensus 18 ~P~tGk~~~LG~d~~~A~~~AieAN~~ 44 (49)
T d1z1ba1 18 DPRTGKEFGLGRDRRIAITEAIQANIE 44 (49)
T ss_dssp CTTTCCEEEEESCHHHHHHHHHHHHHH
T ss_pred cCCCCceecCCccHHHHHHHHHHHHHH
Confidence 567777777778999999999998543
No 5
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.26 E-value=82 Score=23.19 Aligned_cols=43 Identities=30% Similarity=0.403 Sum_probs=31.2
Q ss_pred eEEEeEeCCCcEEEEEccCCceEEeeecccCCCchHHHHHHHHhcCCCc
Q 015456 325 GALFRQYPGPWQVMLKQADSSYACVAESETRFTLSETKEELLRVLGLQE 373 (406)
Q Consensus 325 GaLfR~YPgpWQV~~~~~~g~Y~~Vae~~~RPs~~E~~~~Ll~a~gl~e 373 (406)
|=+.|.|||. +.. +-.|+.|.-..+= |..|++.++|+.+|+..
T Consensus 2 gG~lkVy~~~----l~~-~~~yk~l~vs~~t-Ta~eVI~~~L~k~~l~~ 44 (103)
T d1wxaa1 2 GGTLRIYADS----LKP-NIPYKTILLSTTD-TADFAVAESLEKYGLEK 44 (103)
T ss_dssp CCEEEECCTT----TCS-SSCCEEEECCSSC-CHHHHHHHHHHHHTCSS
T ss_pred CcEEEEEcCc----cCC-CCCeEEEEECCCC-cHHHHHHHHHHHhCCCC
Confidence 4467999983 223 4479988655544 49999999999988863
No 6
>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}
Probab=12.77 E-value=3.6e+02 Score=23.78 Aligned_cols=62 Identities=19% Similarity=0.315 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEE---------c--CCCCCCCCCCCCCchHHHHhh-HHHHHHHHHHHHHhcCC
Q 015456 84 KSYEVLAADAANSLAFALQDGKTRLEID---------F--PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMET 150 (406)
Q Consensus 84 ~s~~eav~qA~~Av~~AL~dG~~RleVE---------F--P~L~~~~d~~~g~~d~~~~~n-~~La~~fa~~l~~~~G~ 150 (406)
.+.++.+++=.+|++.|.+.|-.-+||. | |..|.--|.|-|+- -| +.+.+++++.+.+..|.
T Consensus 151 ~eI~~ii~~f~~aA~rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsl-----eNR~Rf~~Eii~aIr~~~g~ 224 (364)
T d1icpa_ 151 DEIPQIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSL-----ENRCRFALEIVEAVANEIGS 224 (364)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSH-----HHHHHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCeEEEeccCcchhhceehhhcCCcCccccchh-----hhhhhHHHHHhhhhhcccCC
Confidence 4688899999999999999999999997 2 56665567786654 35 78889999888655553
No 7
>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}
Probab=12.24 E-value=4.1e+02 Score=23.08 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHhh-HHHHHHHHHHHHHhcCCce
Q 015456 86 YEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMETRA 152 (406)
Q Consensus 86 ~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~~d~~~g~~d~~~~~n-~~La~~fa~~l~~~~G~rv 152 (406)
.++.+++=.+|+..|.+.|..-+||.. |-.|.--|.|-|+. -| +++++++++.+.+.-+..+
T Consensus 138 I~~ii~~f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~-----enR~Rf~~Eiv~air~~~~~~~ 211 (337)
T d1z41a1 138 VKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSP-----ENRYRFLREIIDEVKQVWDGPL 211 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSH-----HHHHHHHHHHHHHHHHHCCSCE
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchh-----hhhhhHHHHHHHHHhhhhcccc
Confidence 445888999999999999999999982 55565556776664 34 7888899988855444443
No 8
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.86 E-value=3.9e+02 Score=23.11 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHhh-HHHHHHHHHHHHHhcCCce
Q 015456 86 YEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMETRA 152 (406)
Q Consensus 86 ~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~~d~~~g~~d~~~~~n-~~La~~fa~~l~~~~G~rv 152 (406)
.++.+++=.+|++.|.+.|-.-+||-. |-.|-=-|.|=|+. -| +++.+++++.+.+..|...
T Consensus 136 I~~ii~~f~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~-----enR~Rf~~Eii~air~~vg~d~ 209 (330)
T d1ps9a1 136 ILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDY-----RNRMRFAVEVVRAVRERVGNDF 209 (330)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSH-----HHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccH-----hhhhHHHHHHHHHHHHHcCCCc
Confidence 334778999999999999999999982 56665556675654 34 7889999998866666543
No 9
>d2zdpa1 d.58.4.5 (A:0-108) Hypothetical protein PG130 (SAV0165) {Staphylococcus aureus [TaxId: 1280]}
Probab=11.82 E-value=14 Score=28.50 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=34.1
Q ss_pred eEEeeecccCCCchHHHHHHHHh-cCCCccccch-HHHHhc----c---cccccccccccchhhhhccc
Q 015456 346 YACVAESETRFTLSETKEELLRV-LGLQEEEGSS-LQFLRR----G---YKNATWWEEDVDLELSSAWR 405 (406)
Q Consensus 346 Y~~Vae~~~RPs~~E~~~~Ll~a-~gl~e~~gs~-~~Flr~----g---~k~~twwe~~~~~e~s~~wr 405 (406)
|+++..+.-+|.-.+..++.+.. -+|.+.+|=. .+.||. | |-+-|+||+. |+..+||
T Consensus 3 ~vv~n~~~V~~g~~~~fe~~f~~~~~l~~~pGF~~~~llr~~~~~d~~~y~v~t~Wese---eaf~aW~ 68 (109)
T d2zdpa1 3 FMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESE---DSFNNWL 68 (109)
T ss_dssp EEEEEEEEECTTCHHHHHHTTSSCCSGGGSTTEEEEEEEEECSCCSSEEEEEEEEESCH---HHHHHHH
T ss_pred EEEEEEEEeCCCcHHHHHHHHhcccchhcCCCcceEEEEecCCCCCCeEEEEEEEECCH---HHHHHHH
Confidence 56667777777666655555542 2344444433 334442 3 8999999864 5666776
No 10
>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}
Probab=11.81 E-value=2.8e+02 Score=24.50 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEEEE---------c--CCCCCCCCCCCCCchHHHHhh-HHHHHHHHHHHHHhcCC
Q 015456 85 SYEVLAADAANSLAFALQDGKTRLEID---------F--PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMET 150 (406)
Q Consensus 85 s~~eav~qA~~Av~~AL~dG~~RleVE---------F--P~L~~~~d~~~g~~d~~~~~n-~~La~~fa~~l~~~~G~ 150 (406)
..++.+++=.+|++.|.+.|..-+||. | |-.|.=-|.|-|+. -| .++.+++++.+.+..|.
T Consensus 153 eI~~ii~~f~~aA~~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~-----enR~Rf~lEii~aIr~~vg~ 225 (380)
T d1q45a_ 153 EIPRVVEDYCLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSI-----ANRCRFLKQVVEGVVSAIGA 225 (380)
T ss_dssp GHHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSH-----HHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHHHhCcceeeeccchhhhHhhhhccccccCccccCccc-----cchhhhHHHHHHHHHHHccc
Confidence 455689999999999999999999997 2 56665567788776 34 78899999988665564
Done!